Estefani Gaytan Nunez

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Showing 55 changed files with 19770 additions and 4072 deletions
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v1
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v1 --S1
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v1 --S2
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v1 --S1 --S2
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v1 --S3
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v1 --S1 --S3
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v1 --S2 --S3
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v1 --S1 --S2 --S3
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v9 > ../outputs/Run1_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v9 --S1 > ../outputs/Run2_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v9 --S2 > ../outputs/Run3_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v9 --S1 --S2 > ../outputs/Run4_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v9 --S3 > ../outputs/Run5_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v9 --S1 --S3 > ../outputs/Run6_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v9 --S2 --S3 > ../outputs/Run7_v1.txt
python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v9 --S1 --S2 --S3 > ../outputs/Run8_v1.txt
......
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v2 > ../outputs/Run1_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v2 --S1 > ../outputs/Run2_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v2 --S2 > ../outputs/Run3_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v2 --S1 --S2 > ../outputs/Run4_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v2 --S3 > ../outputs/Run5_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v2 --S1 --S3 > ../outputs/Run6_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v2 --S2 --S3 > ../outputs/Run7_v2.txt
python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v2 --S1 --S2 --S3 > ../outputs/Run8_v2.txt
# -*- coding: UTF-8 -*-
import os
from itertools import chain
from optparse import OptionParser
from time import time
from collections import Counter
import re
import nltk
import sklearn
import scipy.stats
import sys
from sklearn.externals import joblib
from sklearn.metrics import make_scorer
from sklearn.cross_validation import cross_val_score
from sklearn.grid_search import RandomizedSearchCV
import sklearn_crfsuite
from sklearn_crfsuite import scorers
from sklearn_crfsuite import metrics
from pandas import DataFrame as DF
from nltk.corpus import stopwords
# Objective
# Training and evaluation of CRFs with sklearn-crfsuite.
#
# Input parameters
# --inputPath=PATH Path of training and test data set
# --trainingFile File with training data set
# --testFile File with test data set
# --outputPath=PATH Output path to place output files
# --nameGrid Number of run
# --version Version Report
# Output
# 1) Best model
# 2) Report
# Examples
# python training_validation_v10.py
# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
# --trainingFile training-data-set-70.txt
# --testFile test-data-set-30.txt
# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/
# --version _v1
# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3
##################################################################
# FEATURES #
##################################################################
#================== COMPLETE WORD FEATURES ======================#
def isGreek(word):
## Complete word are greek letters
alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω',
'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω']
if word in alphabet:
return True
else:
return False
#================ INNER OF THE WORD FEATURES ====================#
def hNumber(word):
## Al leats has one greek letter
for l in word:
if l.isdigit():
return True
return False
def symb(word):
n=0
## At least a not alphanumeric character
for l in word:
if l.isdigit(): n = n+1
if l.isalpha(): n = n+1
#Exclude Greek letters
if isGreek(l): n = n+1
if n<len(word): return True
else: return False
def hUpper(word):
## At least an upper letter
for l in word:
if l.isupper(): return True
return False
def hLower(word):
## At least a lower letter
for l in word:
if l.islower(): return True
return False
def hGreek(word):
## At least a greek letter
for l in word:
if isGreek(l): return True
return False
#============================FEATURES===========================#
def word2features(sent, i, S1, S2, S3):
## Getting word features
## Saving CoreNLP annotations
listElem = sent[i].split('|')
word = listElem[0]
lemma = listElem[1]
postag = listElem[2]
#ner = listElem[4]
#=========================== G =============================#
## NAME LEVEL G
## FUTURE TYPE General features
features = {
## basal features
'lemma': lemma,
'postag': postag
}
## more tha one word in sentence
if i > 0:
## Anterior word
listElem = sent[i - 1].split('|')
## Saving CoreNLP annotations
lemma0 = listElem[1]
postag0 = listElem[2]
features.update({
#LemaG anterior
'-1:lemma': lemma0,
#Postag anterior
'-1:postag': postag0,
})
## is not the last word
if i < len(sent) - 1:
## Posterior word
listElem = sent[i + 1].split('|')
## Saving CoreNLP annotations
lemma2 = listElem[1]
postag2 = listElem[2]
features.update({
#LemaG posterior
'+1:lemma': lemma2,
#Postag posterior
'+1:postag': postag2,
})
#=========================== S1 =============================#
## NAME LEVEL S1
## FEATURE TYPE Inner word features
if S1:
#Add features
features['hUpper']= hUpper(word)
features['hLower']= hUpper(word)
features['hGreek']= hGreek(word)
features['symb']= symb(word)
#word firstChar
features['word[:1]']= word[:1]
#word secondChar
if len(word)>1:
features['word[:2]']= word[:2]
'''
#lemma and postag firstChar
features['lemma[:1]']= lemma[:1]
features['postag[:1]']= postag[:1]
#lemma and postag secondChar
if len(lemma)>1:
features['lemma[:2]']= lemma[:2]
if len(postag)>1:
features['postag[:2]']= postag[:2]
'''
#=========================== S2 =============================#
## NAME LEVEL S2
## FEATURE TYPE Complete word features
if S2:
#Add features
features['word']= word
features['isUpper']= word.isupper()
features['isLower']= word.islower()
features['isGreek']= isGreek(word)
features['isNumber']= word.isdigit()
## more tha one word in sentence
if i > 0:
## Anterior word
listElem = sent[i - 1].split('|')
## Saving CoreNLP annotations
word0 = listElem[0]
features['-1:word']= word0
## is not the last word
if i < len(sent)-1:
listElem = sent[i + 1].split('|')
## Saving CoreNLP annotations
word2 = listElem[0]
## Posterior word
features['+1:word']= word2
#=========================== S3 =============================#
## NAME LEVEL S3
## FEATURE TYPE Extended context features
if S3:
## more tha two words in sentence
if i > 1:
## two anterior lemma and postag
listElem = sent[i - 2].split('|')
## Saving CoreNLP annotations
lemma01 = listElem[1]
postag01 = listElem[2]
features['-2:lemma']= lemma01
features['-2:postag']= postag01
## is not the penultimate word
if i < len(sent) - 2:
listElem = sent[i + 2].split('|')
## Saving CoreNLP annotations
lemma02 = listElem[1]
postag02 = listElem[2]
## two posterior lemma and postag
features['+2:lemma']= lemma02
features['+2:postag']= postag02
return features
def sent2features(sent, S1, S2, S3):
## Itering in sentence for each word and saving its features
return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))]
def sent2labels(sent):
## 3rd position by word is the label
return [elem.split('|')[3] for elem in sent]
def sent2tokens(sent):
return [token for token, postag, label in sent]
def print_transitions(trans_features, f):
for (label_from, label_to), weight in trans_features:
f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight))
def print_state_features(state_features, f):
for (attr, label), weight in state_features:
f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8")))
__author__ = 'egaytan'
##################################################################
# MAIN PROGRAM #
##################################################################
if __name__ == "__main__":
## Defining parameters
parser = OptionParser()
parser.add_option("--inputPath", dest="inputPath", help="Path of training data set", metavar="PATH")
parser.add_option("--outputPath", dest="outputPath", help="Output path to place output files", metavar="PATH")
parser.add_option("--trainingFile", dest="trainingFile", help="File with training data set", metavar="FILE")
parser.add_option("--testFile", dest="testFile", help="File with test data set", metavar="FILE")
parser.add_option("--Gridname", dest="Gridname", help="Report number run", metavar="FILE")
parser.add_option("--version", dest="version", help="Report file", metavar="FILE")
parser.add_option("--S1", dest="S1", help="Future Type", action="store_true", default=False)
parser.add_option("--S2", dest="S2", help="Future Type", action="store_true", default=False)
parser.add_option("--S3", dest="S3", help="Future Type", action="store_true", default=False)
parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words", action="store_true", default=False)
parser.add_option("--excludeSymbols", dest="excludeSymbols", help="Exclude punctuation marks", action="store_true", default=False)
(options, args) = parser.parse_args()
if len(args) > 0:
parser.error("Any parameter given.")
sys.exit(1)
print('-------------------------------- PARAMETERS --------------------------------')
print("Path of training data set: " + options.inputPath)
print("File with training data set: " + str(options.trainingFile))
print("Path of test data set: " + options.inputPath)
print("File with test data set: " + str(options.testFile))
print("Exclude stop words: " + str(options.excludeStopWords))
print("Levels: " + str(options.S1) + " " + str(options.S2))
print("Report file: " + str(options.version))
symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{',
'}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...']
print("Exclude symbols: " + str(options.excludeSymbols))
print('-------------------------------- PROCESSING --------------------------------')
print('Reading corpus...')
t0 = time()
sentencesTrainingData = []
sentencesTestData = []
stopwords = [word for word in stopwords.words('english')]
with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile:
for line in iFile.readlines():
listLine = []
line = line.strip('\n')
for token in line.split():
if options.excludeStopWords:
listToken = token.split('|')
lemma = listToken[1]
if lemma in stopwords:
continue
if options.excludeSymbols:
listToken = token.split('|')
lemma = listToken[1]
if lemma in symbols:
continue
listLine.append(token)
sentencesTrainingData.append(listLine)
print(" Sentences training data: " + str(len(sentencesTrainingData)))
with open(os.path.join(options.inputPath, options.testFile), "r") as iFile:
for line in iFile.readlines():
listLine = []
line = line.strip('\n')
for token in line.split():
if options.excludeStopWords:
listToken = token.split('|')
lemma = listToken[1]
if lemma in stopwords:
continue
if options.excludeSymbols:
listToken = token.split('|')
lemma = listToken[1]
if lemma in symbols:
continue
listLine.append(token)
sentencesTestData.append(listLine)
print(" Sentences test data: " + str(len(sentencesTestData)))
print("Reading corpus done in: %fs" % (time() - t0))
print('-------------------------------- FEATURES --------------------------------')
Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2]
Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2]
print('--------------------------Features Training ---------------------------')
print(DF(list(Dtraning.items())))
print('--------------------------- FeaturesTest -----------------------------')
print(DF(list(Dtest.items())))
t0 = time()
X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData]
y_train = [sent2labels(s) for s in sentencesTrainingData]
X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData]
# print X_test
y_test = [sent2labels(s) for s in sentencesTestData]
# Fixed parameters
# crf = sklearn_crfsuite.CRF(
# algorithm='lbfgs',
# c1=0.1,
# c2=0.1,
# max_iterations=100,
# all_pgossible_transitions=True
# )
# Hyperparameter Optimization
crf = sklearn_crfsuite.CRF(
algorithm='lbfgs',
max_iterations=100,
all_possible_transitions=True
)
params_space = {
'c1': scipy.stats.expon(scale=0.5),
'c2': scipy.stats.expon(scale=0.05),
}
# Original: labels = list(crf.classes_)
# Original: labels.remove('O')
labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH'])
# use the same metric for evaluation
f1_scorer = make_scorer(metrics.flat_f1_score,
average='weighted', labels=labels)
# search
rs = RandomizedSearchCV(crf, params_space,
cv=10,
verbose=3,
n_jobs=-1,
n_iter=20,
# n_iter=50,
scoring=f1_scorer)
rs.fit(X_train, y_train)
# Fixed parameters
# crf.fit(X_train, y_train)
# Best hiperparameters
# crf = rs.best_estimator_
nameReport = str(options.Gridname) + str(options.version) + '.txt'
with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile:
oFile.write("********** TRAINING AND TESTING REPORT **********\n")
oFile.write("Training file: " + options.trainingFile + '\n')
oFile.write('\n')
oFile.write('best params:' + str(rs.best_params_) + '\n')
oFile.write('best CV score:' + str(rs.best_score_) + '\n')
oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000))
print("Training done in: %fs" % (time() - t0))
t0 = time()
# Update best crf
crf = rs.best_estimator_
# Saving model
print(" Saving training model...")
t1 = time()
nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '.mod'
joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel))
print(" Saving training model done in: %fs" % (time() - t1))
# Evaluation against test data
y_pred = crf.predict(X_test)
print("*********************************")
print("Prediction done in: %fs" % (time() - t0))
# labels = list(crf.classes_)
# labels.remove('O')
with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile:
oFile.write('\n')
oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels)))
oFile.write('\n')
# labels = list(crf.classes_)
sorted_labels = sorted(
labels,
key=lambda name: (name[1:], name[0])
)
oFile.write(metrics.flat_classification_report(
y_test, y_pred, labels=sorted_labels, digits=3
))
oFile.write('\n')
oFile.write("\nTop likely transitions:\n")
print_transitions(Counter(crf.transition_features_).most_common(50), oFile)
oFile.write('\n')
oFile.write("\nTop unlikely transitions:\n")
print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile)
oFile.write('\n')
oFile.write("\nTop positive:\n")
print_state_features(Counter(crf.state_features_).most_common(200), oFile)
oFile.write('\n')
oFile.write("\nTop negative:\n")
print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile)
oFile.write('\n')
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-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False False
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003760s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.905489 - 1.1s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.577889 - 0.9s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.679766 - 1.1s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
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[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.838429 - 1.2s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.857493 - 1.0s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.938387 - 1.1s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.848001 - 1.0s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.660012 - 1.0s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.721334 - 1.2s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.669962 - 0.8s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.703150 - 1.2s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.724515 - 1.2s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.708877 - 1.2s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.679766 - 1.2s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.597458 - 1.0s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.720311 - 1.2s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.661884 - 1.0s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.761418 - 1.2s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.586182 - 0.9s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.848001 - 1.2s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.596949 - 1.0s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.586182 - 1.1s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.905489 - 1.1s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.920970 - 1.0s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.866790 - 1.1s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.756561 - 1.2s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.741434 - 1.1s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.857493 - 1.1s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.687300 - 1.1s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.628354 - 1.1s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.921915 - 1.2s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.906853 - 1.2s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.674776 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.609849 - 1.0s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.547996 - 0.9s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.848001 - 1.2s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.773430 - 1.2s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.538621 - 0.9s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.848001 - 1.3s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.679766 - 0.9s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.906853 - 1.1s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.921915 - 1.1s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.776203 - 1.1s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.872249 - 1.2s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
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[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
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[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.687750 - 1.1s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
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[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.627348 - 1.0s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.761418 - 1.0s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.740663 - 1.4s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.730083 - 1.2s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.583681 - 0.9s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.899703 - 1.2s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.781163 - 0.9s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.871555 - 1.2s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.881356 - 1.3s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.855614 - 1.1s
[CV] c1=0.24819385946875622, c2=0.052655886800089084 .................
[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.740663 - 1.2s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.908205 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.710539 - 1.1s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.903565 - 1.0s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.928170 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.624124 - 1.1s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.710369 - 1.1s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.735607 - 1.2s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.632439 - 1.0s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.920970 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.698982 - 1.0s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.841822 - 1.1s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.848001 - 1.2s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.741527 - 1.0s
[CV] c1=0.5713116669674538, c2=0.01054418037901807 ...................
[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.883954 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.659056 - 1.1s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.704237 - 1.1s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.838429 - 1.2s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.697912 - 1.1s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
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[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.788630 - 1.1s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.694090 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.761818 - 1.0s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.818617 - 1.2s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.899703 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.526041 - 1.0s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
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[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.870763 - 1.1s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.816469 - 1.2s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.866790 - 1.2s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.843581 - 1.1s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.838429 - 1.5s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.899703 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.570419 - 0.9s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
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[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.674776 - 1.0s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.721334 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.753693 - 1.1s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.860755 - 1.2s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
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[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
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[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.716266 - 0.9s
[CV] c1=0.22716579831507944, c2=0.007171535474090697 .................
[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.674776 - 1.3s
[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................
[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.924594 - 1.4s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.847745 - 1.1s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.722890 - 1.2s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.848001 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.817004 - 1.3s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.710539 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.606581 - 1.0s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.920970 - 0.9s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.713945 - 1.2s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.710539 - 1.1s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.578904 - 1.0s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.639214 - 1.2s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.935924 - 1.0s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.899703 - 1.1s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.674776 - 1.3s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.784628 - 1.2s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.761165 - 1.1s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.796488 - 0.9s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.740663 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.917838 - 1.1s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.673541 - 1.2s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.605840 - 1.1s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.838429 - 1.1s
[CV] c1=0.5461072593339137, c2=0.002561125547217938 ..................
[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.728584 - 1.2s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.920970 - 1.3s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.720535 - 1.2s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.639214 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.648261 - 0.9s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.906853 - 1.2s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.555809 - 1.0s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.899703 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.530341 - 0.9s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.639214 - 0.9s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.608719 - 1.0s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.866790 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.883034 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.648261 - 1.4s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.541373 - 0.7s
[CV] c1=0.20181412872449603, c2=0.1831099538162916 ...................
[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.906294 - 1.1s
[CV] c1=0.12349654401855631, c2=0.02271624803463124 ..................
[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.906853 - 1.1s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.566256 - 1.0s
[CV] c1=0.1550751527481274, c2=0.0018910637535844298 .................
[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.803761 - 1.2s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.727700 - 1.1s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.874934 - 1.1s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.656490 - 1.1s
[CV] c1=0.9058341641460185, c2=0.007378307188927494 ..................
[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.891760 - 1.1s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.616903 - 0.9s
[CV] c1=1.0380596275637475, c2=0.18279171536318017 ...................
[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.685536 - 1.1s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.753176 - 1.1s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.710303 - 1.2s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.899703 - 1.2s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.614746 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.616903 - 0.9s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.848001 - 1.2s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.852821 - 1.0s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.919762 - 1.1s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.680407 - 1.1s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.888529 - 1.1s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.680867 - 1.1s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.660012 - 1.0s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.848001 - 1.1s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.800487 - 1.1s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.740663 - 1.1s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.867013 - 1.2s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.784199 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.679766 - 1.1s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.689868 - 1.1s
[CV] c1=0.17443878436909793, c2=0.025545309300829405 .................
[CV] c1=0.17443878436909793, c2=0.025545309300829405, score=0.906853 - 1.0s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.899703 - 1.3s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.919762 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.919762 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.689868 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.689868 - 0.8s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.775757 - 1.1s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.798294 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.879383 - 1.2s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.573741 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.680407 - 0.8s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.845912 - 1.1s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.556324 - 0.9s
[CV] c1=0.33745249047104287, c2=0.12028799387317968 ..................
[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.715320 - 1.0s
[CV] c1=1.395645503093999, c2=0.03913303306397459 ....................
[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.648261 - 1.4s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.816730 - 1.0s
[CV] c1=0.1126557712627844, c2=0.10045738310383956 ...................
[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.919762 - 1.1s
[CV] c1=0.5000947711428705, c2=0.016584093219888196 ..................
[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.768203 - 1.1s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.866790 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.748264 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.624124 - 1.0s
[CV] c1=0.27752606848750366, c2=0.036947033112907056 .................
[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.920970 - 1.2s
[CV] c1=0.5994878159065081, c2=0.04116230984146705 ...................
[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.883954 - 1.2s
[CV] c1=0.38390254403775603, c2=0.019141773881786436 .................
[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.761418 - 1.1s
[CV] c1=1.348060881200924, c2=0.05731692872510329 ....................
[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.800487 - 1.1s
[CV] c1=1.24594687727841, c2=0.044969845912413944 ....................
[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.776399 - 1.0s
Training done in: 7.289575s
Saving training model...
Saving training model done in: 0.015155s
*********************************
Prediction done in: 0.026515s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False False
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003629s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.659121 - 1.0s
[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
[CV] c1=0.16006119829799537, c2=0.019860752797724687, score=0.721334 - 1.2s
[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
[CV] c1=0.4473078179611142, c2=0.031890587207333114, score=0.656490 - 1.1s
[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
[CV] c1=0.24874618699414613, c2=0.11465004865259165, score=0.632439 - 1.1s
[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.720311 - 1.2s
[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.573418 - 0.9s
[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
[CV] c1=0.16006119829799537, c2=0.019860752797724687, score=0.674776 - 1.1s
[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
[CV] c1=0.4473078179611142, c2=0.031890587207333114, score=0.721334 - 1.2s
[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
[CV] c1=0.24874618699414613, c2=0.11465004865259165, score=0.715320 - 1.2s
[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.647203 - 1.2s
[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
[CV] c1=0.07184657725057575, c2=0.06305366522004678, score=0.920970 - 1.1s
[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.647203 - 1.2s
[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
[CV] c1=0.2962778461664418, c2=0.28403918392921157, score=0.745362 - 1.1s
[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
[CV] c1=0.09369139763074265, c2=0.07537173130694604, score=0.654823 - 1.0s
[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.919762 - 1.1s
[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
[CV] c1=0.07184657725057575, c2=0.06305366522004678, score=0.660510 - 1.1s
[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.867500 - 1.1s
[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
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[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
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[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
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[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
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[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
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[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
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[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
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[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
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[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
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[CV] c1=1.8472687447020986, c2=0.04257730516940555 ...................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.16006119829799537, c2=0.019860752797724687 .................
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[CV] c1=0.4473078179611142, c2=0.031890587207333114 ..................
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[CV] c1=0.24874618699414613, c2=0.11465004865259165 ..................
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[CV] c1=0.08079651514556553, c2=0.07338414365364293 ..................
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[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
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[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
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[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
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[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
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[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
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[CV] c1=0.07184657725057575, c2=0.06305366522004678 ..................
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[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
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[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
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[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
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[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
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[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
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[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
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[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
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[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
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[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
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[CV] c1=0.09369139763074265, c2=0.07537173130694604 ..................
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[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
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[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
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[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
[CV] c1=0.8749871337656958, c2=0.10465716037380113, score=0.815463 - 1.2s
[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.564654 - 0.9s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.707931 - 1.1s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.906853 - 1.0s
[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.883954 - 1.2s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.897401 - 1.1s
[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.920970 - 1.2s
[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.906853 - 1.1s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.680867 - 1.1s
[CV] c1=0.7577102413636053, c2=0.053324799785666135 ..................
[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.912680 - 1.3s
[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................
[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.902145 - 1.1s
[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
[CV] c1=0.2962778461664418, c2=0.28403918392921157, score=0.868803 - 1.2s
[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.848001 - 1.2s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.775757 - 1.0s
[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.779725 - 1.1s
[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
[CV] c1=0.8749871337656958, c2=0.10465716037380113, score=0.691841 - 1.2s
[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.815463 - 1.1s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.724198 - 1.0s
[CV] c1=0.3233518999667819, c2=0.029859516013558064 ..................
[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.721334 - 0.9s
[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.718465 - 1.2s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.741434 - 1.1s
[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.653248 - 1.2s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.632439 - 1.0s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.887557 - 1.1s
[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.753693 - 1.1s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.654823 - 1.0s
[CV] c1=0.2962778461664418, c2=0.28403918392921157 ...................
[CV] c1=0.2962778461664418, c2=0.28403918392921157, score=0.717219 - 1.3s
[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.720311 - 1.2s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.840539 - 1.2s
[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.660510 - 1.1s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.923613 - 1.1s
[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.906853 - 1.1s
[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.775757 - 1.2s
[CV] c1=0.02968662156028001, c2=0.12184278879734725 ..................
[CV] c1=0.02968662156028001, c2=0.12184278879734725, score=0.875991 - 1.0s
[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.906853 - 1.3s
[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
[CV] c1=0.8749871337656958, c2=0.10465716037380113, score=0.852672 - 1.1s
[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.843581 - 1.0s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.694090 - 1.1s
[CV] c1=0.3233518999667819, c2=0.029859516013558064 ..................
[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.679766 - 1.0s
[CV] c1=0.1483614516251027, c2=0.06633729885192889 ...................
[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.603251 - 1.0s
[CV] c1=0.8749871337656958, c2=0.10465716037380113 ...................
[CV] c1=0.8749871337656958, c2=0.10465716037380113, score=0.691890 - 1.2s
[CV] c1=0.8748278310570387, c2=0.16014963439323648 ...................
[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.624124 - 1.2s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.919762 - 1.4s
[CV] c1=0.3233518999667819, c2=0.029859516013558064 ..................
[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.580556 - 0.7s
[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.852821 - 1.2s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.760431 - 1.1s
[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.740663 - 1.1s
[CV] c1=0.026281073826085702, c2=0.11845123072490214 .................
[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.887557 - 1.3s
[CV] c1=0.3233518999667819, c2=0.029859516013558064 ..................
[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.872249 - 0.9s
[CV] c1=0.5898209423957529, c2=0.01037034945739547 ...................
[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.708877 - 1.2s
[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................
[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.866790 - 1.1s
[CV] c1=0.17342748153476484, c2=0.03315662632542101 ..................
[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.783313 - 1.3s
[CV] c1=0.23466274005583443, c2=0.14468669456987662 ..................
[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.848001 - 1.2s
[CV] c1=0.3233518999667819, c2=0.029859516013558064 ..................
[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.867217 - 1.0s
Training done in: 7.447655s
Saving training model...
Saving training model done in: 0.014152s
*********************************
Prediction done in: 0.025248s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True False
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003666s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.656999 - 1.0s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.549071 - 0.9s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.559946 - 0.9s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.840539 - 1.1s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.660012 - 1.2s
[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.826261 - 0.8s
[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.919762 - 1.0s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.761818 - 1.1s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.848001 - 1.2s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.761418 - 1.1s
[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.716676 - 0.9s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.670684 - 1.1s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.872399 - 1.1s
[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.743125 - 1.1s
[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
[CV] c1=0.20078106949479455, c2=0.023670407350363146, score=0.838429 - 1.0s
[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.641040 - 0.9s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.704277 - 1.0s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.694072 - 1.2s
[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.694072 - 1.2s
[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
[CV] c1=0.20078106949479455, c2=0.023670407350363146, score=0.679766 - 1.1s
[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.787287 - 0.8s
[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.724007 - 1.1s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.719596 - 1.2s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.919762 - 1.0s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.852821 - 1.2s
[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.566523 - 1.1s
[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
[CV] c1=0.6326902790510075, c2=0.060383400796135134, score=0.704866 - 1.2s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.576589 - 1.0s
[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.666440 - 1.0s
[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
[CV] c1=0.20078106949479455, c2=0.023670407350363146, score=0.721334 - 1.3s
[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.761818 - 1.0s
[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.660510 - 1.2s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.891760 - 1.2s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.607039 - 0.9s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.848001 - 1.3s
[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.852821 - 1.1s
[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.592237 - 1.0s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.843338 - 1.2s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.718941 - 1.2s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.899703 - 1.3s
[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.848001 - 1.0s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.787287 - 1.1s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.739174 - 1.3s
[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.753693 - 1.1s
[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
[CV] c1=0.20078106949479455, c2=0.023670407350363146, score=0.848001 - 1.1s
[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.760479 - 1.1s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.606581 - 1.1s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.661884 - 1.2s
[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.855614 - 1.2s
[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.797002 - 1.2s
[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.883954 - 1.2s
[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
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[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
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[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.721334 - 1.2s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
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[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
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[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
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[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
[CV] c1=0.016463867524667154, c2=0.009787977090088149, score=0.935386 - 1.2s
[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
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[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.872249 - 1.2s
[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
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[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
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[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
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[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
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[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
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[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
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[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.7463567881969966, c2=0.010504031522292094 ..................
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[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
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[CV] c1=0.48395276763378503, c2=0.022365459591399905 .................
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[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
[CV] c1=0.016463867524667154, c2=0.009787977090088149, score=0.932448 - 1.1s
[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
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[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
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[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
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[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
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[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
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[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
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[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
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[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
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[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
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[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
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[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
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[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
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[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
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[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
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[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
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[CV] c1=0.6765797517220264, c2=0.007434912899378703 ..................
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[CV] c1=0.20078106949479455, c2=0.023670407350363146 .................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
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[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
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[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=1.00966870162731, c2=0.025958556376657574 ....................
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[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
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[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
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[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
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[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
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[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
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[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
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[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
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[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
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[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.716676 - 1.1s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
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[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.715320 - 1.3s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.698982 - 1.2s
[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
[CV] c1=0.016463867524667154, c2=0.009787977090088149, score=0.679766 - 1.2s
[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
[CV] c1=0.2837138419533594, c2=0.009966189901122134, score=0.766379 - 1.1s
[CV] c1=0.10973444640225576, c2=0.010828669158530741 .................
[CV] c1=0.10973444640225576, c2=0.010828669158530741, score=0.920970 - 1.1s
[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.800678 - 1.2s
[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.624124 - 1.1s
[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.857493 - 1.2s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.701526 - 1.1s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.596309 - 0.9s
[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.920970 - 1.2s
[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.691841 - 1.1s
[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.778347 - 1.2s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.566256 - 1.0s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.773116 - 0.9s
[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.632439 - 0.7s
[CV] c1=0.22656149469246054, c2=0.06475330717049832 ..................
[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.652192 - 1.0s
[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.852672 - 1.2s
[CV] c1=0.06766924551335582, c2=0.05664528713448661 ..................
[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.654823 - 1.0s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.836651 - 1.1s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.588339 - 0.9s
[CV] c1=0.37276009448707553, c2=0.08055336693981598 ..................
[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.748070 - 1.1s
[CV] c1=0.6326902790510075, c2=0.060383400796135134 ..................
[CV] c1=0.6326902790510075, c2=0.060383400796135134, score=0.794740 - 1.2s
[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................
[CV] c1=0.016463867524667154, c2=0.009787977090088149, score=0.866790 - 1.3s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.687750 - 1.4s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.512837 - 0.7s
[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.876920 - 1.4s
[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.564654 - 0.9s
[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.843338 - 1.1s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.856715 - 1.2s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.657444 - 0.9s
[CV] c1=0.6395797105929565, c2=0.0461197515046378 ....................
[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.883954 - 1.2s
[CV] c1=1.168847855695387, c2=0.054074754440257625 ...................
[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.686713 - 1.2s
[CV] c1=0.7823077481969921, c2=0.03404532137185433 ...................
[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.891760 - 1.3s
[CV] c1=0.2837138419533594, c2=0.009966189901122134 ..................
[CV] c1=0.2837138419533594, c2=0.009966189901122134, score=0.740663 - 1.3s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.580569 - 1.0s
[CV] c1=0.16888346085657382, c2=0.02208269716963201 ..................
[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.713945 - 1.3s
[CV] c1=0.8607518495035315, c2=0.15862627698471804 ...................
[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.654029 - 1.1s
[CV] c1=0.6168211659220036, c2=0.006845272732197598 ..................
[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.761818 - 1.2s
[CV] c1=0.9988969075737604, c2=0.006345198146357405 ..................
[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.787287 - 1.3s
[CV] c1=2.243122699972053, c2=0.02408920842785463 ....................
[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.660504 - 0.9s
Training done in: 7.331329s
Saving training model...
Saving training model done in: 0.014029s
*********************************
Prediction done in: 0.024944s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True False
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003846s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 hUpper False
5 hLower False
6 hGreek False
7 symb False
8 word[:1] 1
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 hUpper False
7 hLower False
8 hGreek False
9 symb True
10 word[:1] d
11 word[:2] de
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.692390 - 1.1s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.677656 - 1.4s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.697829 - 1.6s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.720638 - 1.4s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.716901 - 1.5s
[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.866982 - 1.4s
[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.701470 - 1.2s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.687400 - 1.3s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.941969 - 1.5s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.712895 - 1.1s
[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.764724 - 1.3s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.691639 - 1.4s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.765131 - 1.3s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.891979 - 1.4s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.704318 - 1.4s
[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.679052 - 1.4s
[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.723654 - 1.3s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.882037 - 1.4s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.687400 - 1.3s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.885770 - 1.5s
[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.895305 - 1.2s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.782459 - 1.6s
[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
[CV] c1=0.06546675625130262, c2=0.059226785100600615, score=0.911666 - 1.5s
[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
[CV] c1=0.8446622313160173, c2=0.03942509766742223, score=0.697504 - 1.4s
[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
[CV] c1=0.7034919312846388, c2=0.0024933361931142694, score=0.696275 - 0.9s
[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.706631 - 1.1s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.685539 - 1.4s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.871122 - 1.5s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.765131 - 1.5s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.747961 - 1.4s
[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
[CV] c1=0.5467988707284427, c2=0.00803194900725053, score=0.704197 - 1.3s
[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.768514 - 1.3s
[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
[CV] c1=0.06546675625130262, c2=0.059226785100600615, score=0.729114 - 1.4s
[CV] c1=0.7298207185304556, c2=0.03502458791701493 ...................
[CV] c1=0.7298207185304556, c2=0.03502458791701493, score=0.692390 - 1.3s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.686683 - 1.4s
[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.680303 - 1.2s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.679944 - 1.3s
[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.724757 - 1.4s
[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.700894 - 1.7s
[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.876503 - 1.6s
[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
[CV] c1=0.5467988707284427, c2=0.00803194900725053, score=0.692577 - 1.2s
[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.882037 - 1.3s
[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
[CV] c1=0.06546675625130262, c2=0.059226785100600615, score=0.866982 - 1.4s
[CV] c1=0.7298207185304556, c2=0.03502458791701493 ...................
[CV] c1=0.7298207185304556, c2=0.03502458791701493, score=0.874383 - 1.5s
[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
[CV] c1=0.7034919312846388, c2=0.0024933361931142694, score=0.780716 - 1.3s
[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.711689 - 1.3s
[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
[CV] c1=1.0834398150991624, c2=0.003997536598295317, score=0.925608 - 1.3s
[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
[CV] c1=0.0978143608714834, c2=0.07833099658452108, score=0.686683 - 1.2s
[CV] c1=0.7298207185304556, c2=0.03502458791701493 ...................
[CV] c1=0.7298207185304556, c2=0.03502458791701493, score=0.699064 - 1.2s
[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
[CV] c1=0.7034919312846388, c2=0.0024933361931142694, score=0.891477 - 1.4s
[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
[CV] c1=0.5467988707284427, c2=0.00803194900725053, score=0.746445 - 1.4s
[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
[CV] c1=1.0834398150991624, c2=0.003997536598295317, score=0.704118 - 1.3s
[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
[CV] c1=0.0978143608714834, c2=0.07833099658452108, score=0.889040 - 1.4s
[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
[CV] c1=0.8446622313160173, c2=0.03942509766742223, score=0.758798 - 1.3s
[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
[CV] c1=0.20192101167465534, c2=0.04531597351347868, score=0.714313 - 1.2s
[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.798839 - 1.5s
[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
[CV] c1=1.0834398150991624, c2=0.003997536598295317, score=0.761432 - 1.4s
[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
[CV] c1=0.0978143608714834, c2=0.07833099658452108, score=0.810699 - 1.5s
[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
[CV] c1=0.8446622313160173, c2=0.03942509766742223, score=0.691266 - 1.1s
[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
[CV] c1=0.7034919312846388, c2=0.0024933361931142694, score=0.925608 - 1.4s
[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.859428 - 1.3s
[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
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[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
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[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
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[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
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[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
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[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
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[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
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[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
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[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
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[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
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[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
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[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
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[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
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[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
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[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
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[CV] c1=1.4589431115727765, c2=0.00462048934522589 ...................
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[CV] c1=0.47432740691636344, c2=0.03758235542198346 ..................
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[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
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[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
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[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
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[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
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[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
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[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
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[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
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[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
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[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
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[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
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[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
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[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
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[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
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[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
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[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
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[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
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[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
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[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
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[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
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[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
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[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
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[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
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[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
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[CV] c1=0.4819640275387183, c2=0.029691473721229295 ..................
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[CV] c1=0.21506344691612903, c2=0.02416742878069053 ..................
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[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
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[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
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[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
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[CV] c1=0.7298207185304556, c2=0.03502458791701493 ...................
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[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
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[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
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[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
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[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.7552293645263738, c2=0.010542927773867011 ..................
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[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
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[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
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[CV] c1=0.7298207185304556, c2=0.03502458791701493 ...................
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[CV] c1=0.7034919312846388, c2=0.0024933361931142694 .................
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[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
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[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
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[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
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[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
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[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
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[CV] c1=0.5467988707284427, c2=0.00803194900725053 ...................
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[CV] c1=1.0834398150991624, c2=0.003997536598295317 ..................
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[CV] c1=0.0978143608714834, c2=0.07833099658452108 ...................
[CV] c1=0.0978143608714834, c2=0.07833099658452108, score=0.885770 - 1.3s
[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
[CV] c1=0.8446622313160173, c2=0.03942509766742223, score=0.849474 - 1.4s
[CV] c1=0.20192101167465534, c2=0.04531597351347868 ..................
[CV] c1=0.20192101167465534, c2=0.04531597351347868, score=0.895305 - 1.3s
[CV] c1=0.298080277984045, c2=0.05416968597972857 ....................
[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.941969 - 1.4s
[CV] c1=0.350973260533853, c2=0.010037581949873645 ...................
[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.941969 - 1.3s
[CV] c1=0.06546675625130262, c2=0.059226785100600615 .................
[CV] c1=0.06546675625130262, c2=0.059226785100600615, score=0.889759 - 1.6s
[CV] c1=0.8446622313160173, c2=0.03942509766742223 ...................
[CV] c1=0.8446622313160173, c2=0.03942509766742223, score=0.788536 - 1.7s
[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.718007 - 1.3s
[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.882037 - 1.5s
[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
[CV] c1=0.5752830046115532, c2=0.029011946679537343, score=0.859428 - 1.4s
[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.801514 - 1.6s
[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.699863 - 1.1s
[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.879055 - 1.2s
[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.747961 - 1.7s
[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
[CV] c1=0.5752830046115532, c2=0.029011946679537343, score=0.685577 - 1.3s
[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.767805 - 1.3s
[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.891477 - 1.4s
[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.866982 - 1.3s
[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.895305 - 1.5s
[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
[CV] c1=0.5752830046115532, c2=0.029011946679537343, score=0.765131 - 1.4s
[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.905956 - 1.5s
[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.941969 - 1.4s
[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.877324 - 1.2s
[CV] c1=0.24706375983667295, c2=0.024420937052355998 .................
[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.943015 - 1.5s
[CV] c1=0.5752830046115532, c2=0.029011946679537343 ..................
[CV] c1=0.5752830046115532, c2=0.029011946679537343, score=0.941969 - 1.5s
[CV] c1=0.12822074735920433, c2=0.028255623123597452 .................
[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.712895 - 1.3s
[CV] c1=0.5405494603106622, c2=0.02185761043719437 ...................
[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.746445 - 1.4s
[CV] c1=0.3811975088263534, c2=0.09035610955818969 ...................
[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.941969 - 1.2s
Training done in: 9.118032s
Saving training model...
Saving training model done in: 0.013122s
*********************************
Prediction done in: 0.030181s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False True
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003814s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
[CV] c1=0.016595180754549518, c2=0.030948306031002376, score=0.867500 - 1.3s
[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.903565 - 1.2s
[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
[CV] c1=0.43749590188690224, c2=0.13150259694056668, score=0.883954 - 1.3s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.577372 - 1.1s
[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
[CV] c1=0.016595180754549518, c2=0.030948306031002376, score=0.923613 - 1.4s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.651934 - 1.0s
[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
[CV] c1=0.43749590188690224, c2=0.13150259694056668, score=0.917838 - 1.0s
[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
[CV] c1=2.0055201578565307, c2=0.00218367124029512, score=0.674465 - 1.4s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.571018 - 1.0s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.860755 - 1.2s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.708065 - 1.1s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.899703 - 1.1s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.566968 - 1.0s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.753693 - 0.8s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.632439 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.684055 - 1.2s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.869740 - 1.1s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.771784 - 1.2s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.774739 - 0.9s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.814703 - 1.3s
[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
[CV] c1=2.291960860484793, c2=0.020013816890766867, score=0.583163 - 1.0s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.592237 - 0.9s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.614085 - 1.3s
[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
[CV] c1=0.3624734639674293, c2=0.06885589564532553, score=0.667917 - 1.0s
[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
[CV] c1=0.1181247797079666, c2=0.014644040000881146, score=0.920970 - 1.1s
[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
[CV] c1=2.291960860484793, c2=0.020013816890766867, score=0.562003 - 1.2s
[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
[CV] c1=0.5286937810460386, c2=0.02768432633092313, score=0.899703 - 1.1s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.704452 - 0.9s
[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
[CV] c1=0.3624734639674293, c2=0.06885589564532553, score=0.899703 - 1.0s
[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
[CV] c1=0.1181247797079666, c2=0.014644040000881146, score=0.906853 - 1.3s
[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
[CV] c1=0.10489093988322791, c2=0.040276414459420484, score=0.740663 - 1.1s
[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
[CV] c1=0.09784611146788476, c2=0.054300102474929904, score=0.906853 - 0.9s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.576589 - 0.9s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.899703 - 1.2s
[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
[CV] c1=0.649264531621016, c2=0.031877071613145826, score=0.673541 - 1.0s
[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
[CV] c1=0.10489093988322791, c2=0.040276414459420484, score=0.649654 - 1.0s
[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
[CV] c1=0.5286937810460386, c2=0.02768432633092313, score=0.555809 - 0.8s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.509067 - 1.1s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.722890 - 1.1s
[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
[CV] c1=0.1181247797079666, c2=0.014644040000881146, score=0.721334 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.563354 - 1.0s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.858883 - 1.2s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.605840 - 1.1s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.585484 - 1.0s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.899703 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.872399 - 1.2s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.751661 - 1.1s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.698163 - 1.2s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.698982 - 1.0s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.557862 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.891760 - 1.2s
[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
[CV] c1=0.5286937810460386, c2=0.02768432633092313, score=0.710539 - 1.1s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.659121 - 1.1s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.660012 - 1.0s
[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
[CV] c1=0.1181247797079666, c2=0.014644040000881146, score=0.674776 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.903565 - 1.1s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.761418 - 1.3s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.687750 - 1.3s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.770514 - 1.0s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.729308 - 1.1s
[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
[CV] c1=0.7789541450968716, c2=0.013394697180379615, score=0.794740 - 1.2s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.860755 - 1.2s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.677721 - 1.3s
[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
[CV] c1=0.016595180754549518, c2=0.030948306031002376, score=0.654823 - 1.2s
[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.694072 - 1.2s
[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
[CV] c1=0.43749590188690224, c2=0.13150259694056668, score=0.814703 - 1.0s
[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
[CV] c1=0.09784611146788476, c2=0.054300102474929904, score=0.601571 - 0.9s
[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
[CV] c1=0.3136994988226159, c2=0.003462481114435929, score=0.679766 - 0.8s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.812131 - 0.9s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.917838 - 1.2s
[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
[CV] c1=2.291960860484793, c2=0.020013816890766867, score=0.588673 - 1.1s
[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
[CV] c1=0.5286937810460386, c2=0.02768432633092313, score=0.660012 - 1.1s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.719434 - 1.2s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
[CV] c1=0.5018716826309633, c2=0.04614139578392318, score=0.555809 - 0.9s
[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
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[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
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[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
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[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
[CV] c1=0.5286937810460386, c2=0.02768432633092313, score=0.780490 - 1.1s
[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
[CV] c1=0.7423324269870698, c2=0.05489724550548968, score=0.852044 - 1.0s
[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
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[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
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[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
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[CV] c1=0.7423324269870698, c2=0.05489724550548968 ...................
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[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
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[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
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[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
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[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
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[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.5018716826309633, c2=0.04614139578392318 ...................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
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[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
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[CV] c1=0.7789541450968716, c2=0.013394697180379615 ..................
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[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
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[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
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[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
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[CV] c1=0.1181247797079666, c2=0.014644040000881146 ..................
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[CV] c1=2.291960860484793, c2=0.020013816890766867 ...................
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[CV] c1=0.5286937810460386, c2=0.02768432633092313 ...................
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[CV] c1=0.3136994988226159, c2=0.003462481114435929 ..................
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[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
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[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
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[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
[CV] c1=2.0055201578565307, c2=0.00218367124029512, score=0.614085 - 1.2s
[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
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[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
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[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
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[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
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[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
[CV] c1=2.0055201578565307, c2=0.00218367124029512, score=0.596309 - 1.2s
[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.789914 - 1.0s
[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................
[CV] c1=0.016595180754549518, c2=0.030948306031002376, score=0.723492 - 1.4s
[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.708065 - 1.2s
[CV] c1=0.43749590188690224, c2=0.13150259694056668 ..................
[CV] c1=0.43749590188690224, c2=0.13150259694056668, score=0.705332 - 1.2s
[CV] c1=2.0055201578565307, c2=0.00218367124029512 ...................
[CV] c1=2.0055201578565307, c2=0.00218367124029512, score=0.515901 - 1.1s
[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.761418 - 0.9s
[CV] c1=0.3624734639674293, c2=0.06885589564532553 ...................
[CV] c1=0.3624734639674293, c2=0.06885589564532553, score=0.572450 - 1.1s
[CV] c1=0.649264531621016, c2=0.031877071613145826 ...................
[CV] c1=0.649264531621016, c2=0.031877071613145826, score=0.713917 - 1.1s
[CV] c1=0.10489093988322791, c2=0.040276414459420484 .................
[CV] c1=0.10489093988322791, c2=0.040276414459420484, score=0.735607 - 1.1s
[CV] c1=0.09784611146788476, c2=0.054300102474929904 .................
[CV] c1=0.09784611146788476, c2=0.054300102474929904, score=0.731639 - 1.3s
[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.835074 - 1.0s
[CV] c1=1.1186692278337627, c2=0.22309738782267205 ...................
[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.598718 - 0.8s
[CV] c1=0.5233514980566518, c2=0.05607213609434676 ...................
[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.721334 - 1.1s
[CV] c1=0.7863468698144266, c2=0.0037442044888246354 .................
[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.891760 - 1.3s
[CV] c1=0.3568772328262357, c2=0.03679897833962741 ...................
[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.721334 - 1.1s
[CV] c1=1.5356087724511331, c2=0.14043664965912495 ...................
[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.654414 - 1.2s
[CV] c1=0.44728536850250333, c2=0.015283238629035883 .................
[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.899703 - 0.8s
Training done in: 7.351656s
Saving training model...
Saving training model done in: 0.013628s
*********************************
Prediction done in: 0.024027s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False True
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003654s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 word 1
5 isUpper False
6 isLower False
7 isGreek False
8 isNumber True
9 -1:word PQ
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 word delta-fnr
7 isUpper False
8 isLower True
9 isGreek False
10 isNumber False
11 -1:word _
12 +1:word _
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.630601 - 1.2s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.848001 - 1.6s
[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.899703 - 1.6s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.742271 - 1.4s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.678771 - 1.1s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.719617 - 1.4s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.873584 - 1.5s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.690262 - 1.3s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.577546 - 1.2s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.719481 - 1.1s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.902737 - 1.6s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.549739 - 1.2s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.925743 - 1.5s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.848001 - 1.5s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.940286 - 1.4s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.849399 - 1.4s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.887803 - 1.2s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.853386 - 1.4s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.632374 - 1.3s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.857175 - 1.4s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.863912 - 1.4s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.768974 - 1.3s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.938387 - 1.5s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.624854 - 1.3s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.721089 - 1.2s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.624196 - 1.2s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.849399 - 1.5s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.904833 - 1.7s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.908205 - 1.4s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.692991 - 1.3s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.803642 - 1.5s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.680458 - 1.3s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.919762 - 1.4s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.703784 - 1.5s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.883871 - 1.0s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.866790 - 1.6s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.871122 - 1.5s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.747448 - 1.5s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.757664 - 1.5s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.708356 - 1.4s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.675999 - 1.3s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.927708 - 1.5s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.899703 - 1.4s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.919762 - 1.6s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.690262 - 1.1s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.938387 - 1.5s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.737065 - 1.5s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.717966 - 1.5s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.671836 - 1.5s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.935584 - 1.1s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.747448 - 1.5s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.687077 - 1.5s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.627027 - 1.2s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.857982 - 1.5s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.731659 - 1.4s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.719617 - 1.5s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.929632 - 1.4s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.602106 - 1.3s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.779997 - 1.4s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.823710 - 1.4s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.706548 - 1.3s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.720838 - 1.3s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.752021 - 1.4s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.726221 - 1.4s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.900039 - 1.5s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.532088 - 1.3s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.738823 - 1.4s
[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.665417 - 1.5s
[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.690262 - 1.3s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.620108 - 1.2s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.818254 - 1.5s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.665417 - 1.3s
[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.721089 - 1.5s
[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.734882 - 1.3s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.866790 - 1.5s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.535633 - 1.2s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.734882 - 1.4s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.724270 - 1.5s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.672403 - 1.4s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.906853 - 1.4s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.849399 - 1.5s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.830312 - 1.5s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.779574 - 1.6s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.521176 - 1.2s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.740663 - 0.9s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
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[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.675999 - 1.4s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.728478 - 1.7s
[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.851068 - 1.6s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.724270 - 1.4s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.717243 - 2.0s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.594443 - 1.2s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.895775 - 1.6s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
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[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
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[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
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[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.710564 - 1.6s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
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[CV] c1=0.25483228949461545, c2=0.13089764900278175 ..................
[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.662689 - 1.5s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.572084 - 1.2s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.930841 - 1.7s
[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.849399 - 1.5s
[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.930841 - 1.4s
[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.681542 - 1.4s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
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[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
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[CV] c1=0.5665040037123241, c2=0.011962486026690578 ..................
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[CV] c1=0.07999002423801141, c2=0.000868661924339573 .................
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[CV] c1=1.6511701323120827, c2=0.08558259304928574 ...................
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[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.930841 - 1.5s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.895623 - 1.4s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.871945 - 1.5s
[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.909467 - 1.5s
[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
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[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
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[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
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[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
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[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
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[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
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[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
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[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
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[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
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[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
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[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
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[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
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[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
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[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.879055 - 1.5s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
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[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
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[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
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[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
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[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.711434 - 1.4s
[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.711434 - 1.6s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.632374 - 1.1s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.778194 - 1.5s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.708650 - 1.6s
[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
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[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.724270 - 1.4s
[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.899703 - 1.3s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.748932 - 1.5s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.755552 - 1.4s
[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.746243 - 1.6s
[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.603222 - 1.2s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.672403 - 1.1s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.766835 - 1.5s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
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[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.883871 - 1.4s
[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.904833 - 1.4s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.779997 - 1.1s
[CV] c1=0.11429489799744622, c2=0.01488578964446575 ..................
[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.933789 - 0.9s
[CV] c1=0.2905084415493135, c2=0.01849397696699137 ...................
[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.843585 - 1.5s
[CV] c1=0.9997736934864921, c2=0.026878803960042243 ..................
[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.790471 - 1.4s
[CV] c1=0.22692190968141177, c2=0.023819618838019103 .................
[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.723944 - 1.4s
[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.933040 - 1.5s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.535144 - 0.9s
[CV] c1=0.18982871503169924, c2=0.046233745555238626 .................
[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.819775 - 1.5s
[CV] c1=0.8685665773754986, c2=0.040475472475883754 ..................
[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.754855 - 1.7s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
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[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.892457 - 1.7s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.678081 - 1.3s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.848001 - 1.5s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.892457 - 1.4s
[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.943287 - 1.4s
[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.705101 - 1.5s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.703127 - 1.0s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.819775 - 1.5s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
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[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
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[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.819775 - 1.4s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.726221 - 1.1s
[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................
[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.684656 - 1.4s
[CV] c1=0.6747528619946138, c2=0.07283789541988857 ...................
[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.863912 - 1.4s
[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
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[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
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[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
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[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
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[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
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[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
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[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.921146 - 1.5s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.681542 - 1.0s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.690262 - 1.5s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
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[CV] c1=0.04258998203691286, c2=0.08845660294483688 ..................
[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.629561 - 1.4s
[CV] c1=0.08442255640374982, c2=0.07334312442868467 ..................
[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.613609 - 1.3s
[CV] c1=0.17037724024202613, c2=0.04579884459555339 ..................
[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.883871 - 1.4s
[CV] c1=0.15911702521720522, c2=0.046161934701581496 .................
[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.933070 - 1.6s
[CV] c1=0.09008322955518538, c2=0.07446232300940821 ..................
[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.925714 - 1.3s
[CV] c1=0.25902302075140105, c2=0.03091362551658973 ..................
[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.747448 - 1.4s
[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................
[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.752021 - 1.4s
[CV] c1=1.6087629131114594, c2=0.06538470359631814 ...................
[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.624854 - 1.1s
Training done in: 9.342762s
Saving training model...
Saving training model done in: 0.013957s
*********************************
Prediction done in: 0.032526s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True True
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003836s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.567237 - 0.9s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.852821 - 1.1s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.654823 - 1.0s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.921915 - 1.2s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.899703 - 1.2s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.920970 - 1.4s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.720311 - 1.3s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.675506 - 1.3s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.570419 - 1.0s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.723593 - 0.8s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.710539 - 1.2s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.867500 - 1.1s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.701323 - 1.2s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.858883 - 1.2s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.848230 - 0.7s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.753693 - 1.2s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.766835 - 1.0s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.624832 - 1.2s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.679766 - 1.3s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.802426 - 0.9s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.919762 - 1.1s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.887557 - 1.1s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.640353 - 1.1s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.848001 - 1.2s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.774739 - 0.9s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.656490 - 1.1s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.920970 - 1.2s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.691890 - 1.3s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.864316 - 1.2s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.717157 - 0.8s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.761818 - 1.1s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.848001 - 1.2s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.853988 - 1.2s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.920970 - 1.2s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.763058 - 0.9s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.643807 - 1.2s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.715300 - 1.1s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.632407 - 1.0s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.867500 - 1.1s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.852821 - 1.1s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.556973 - 1.0s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.731639 - 1.3s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.557241 - 1.0s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.737308 - 1.3s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.935386 - 1.1s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.852821 - 1.1s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.753693 - 1.1s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.606581 - 1.0s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.887557 - 1.0s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.753693 - 1.2s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.848001 - 1.2s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.761418 - 1.0s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.637423 - 1.0s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.899703 - 1.2s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.834063 - 1.2s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.727061 - 1.1s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.899703 - 1.2s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.688946 - 1.1s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.775757 - 1.1s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.699610 - 1.4s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.720311 - 1.2s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.674776 - 1.2s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.679766 - 1.0s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.548511 - 0.8s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.641007 - 1.0s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.682397 - 1.0s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.721334 - 1.0s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.586573 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.687750 - 0.9s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.899703 - 1.1s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.826869 - 1.2s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.660012 - 1.1s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.870586 - 1.2s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.654823 - 1.2s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.569039 - 0.7s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.807016 - 1.3s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.906853 - 1.2s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.678288 - 1.3s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.766835 - 1.2s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.674776 - 1.0s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.782641 - 1.0s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.656490 - 1.1s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.686713 - 1.1s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.896193 - 1.2s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.715320 - 1.4s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.860729 - 1.3s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.573749 - 1.1s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.698982 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.905489 - 0.9s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.599785 - 0.8s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.654823 - 1.0s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.875991 - 1.2s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.815463 - 1.0s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.710539 - 1.1s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.553828 - 0.5s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.625815 - 1.1s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.860536 - 1.2s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.920970 - 1.2s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.659056 - 1.2s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.659253 - 1.1s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.705332 - 1.1s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.606859 - 1.0s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.793956 - 1.2s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.787287 - 1.3s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.906853 - 1.1s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.703150 - 1.1s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.761418 - 1.2s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.905489 - 1.2s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.605840 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.761818 - 1.1s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.812195 - 1.1s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.660012 - 1.1s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.551686 - 1.0s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.784955 - 1.2s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.607039 - 1.1s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.919762 - 1.2s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
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[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.761818 - 1.3s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.843581 - 1.2s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.624832 - 0.8s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.664849 - 1.1s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.915377 - 1.1s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.857493 - 1.4s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.540524 - 0.9s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.724290 - 1.2s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.866790 - 1.2s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.899703 - 1.1s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.883954 - 1.2s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.526041 - 1.0s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.883954 - 1.2s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.761597 - 1.4s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.906853 - 1.1s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.577889 - 0.9s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.721334 - 1.4s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.815463 - 0.9s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.661281 - 1.4s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.779725 - 1.2s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.906853 - 1.2s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.580556 - 1.0s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.794740 - 1.0s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.928170 - 1.4s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.929766 - 1.1s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.938387 - 1.2s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.879383 - 1.1s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.670787 - 1.1s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.906853 - 1.3s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.603251 - 0.9s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.848001 - 1.3s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.740663 - 1.2s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.878327 - 0.9s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.740663 - 1.0s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.875991 - 1.2s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.716266 - 1.3s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.578869 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.753693 - 1.1s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.674776 - 0.8s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.729308 - 1.2s
[CV] c1=0.035487685725177805, c2=0.07066796438693485 .................
[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.607039 - 0.9s
[CV] c1=0.7754820747377101, c2=0.12099050393613156 ...................
[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.787287 - 1.3s
[CV] c1=0.38805051498984994, c2=0.01477620810001598 ..................
[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.782641 - 1.4s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.720311 - 1.2s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.919762 - 1.1s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.729308 - 1.2s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.788630 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.852821 - 1.1s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.906853 - 1.2s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.547996 - 1.0s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.855614 - 1.2s
[CV] c1=1.2077186464874288, c2=0.11106721030811739 ...................
[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.722890 - 1.1s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.728584 - 1.1s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.812131 - 1.1s
[CV] c1=0.5672718732034153, c2=0.02408083022682672 ...................
[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.899703 - 1.3s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.841313 - 1.4s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.852672 - 1.2s
[CV] c1=0.725079276744011, c2=0.0025324013059438034 ..................
[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.843338 - 1.2s
[CV] c1=0.15761238349200285, c2=0.002525593517619589 .................
[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.867217 - 1.5s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.866790 - 1.1s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.741434 - 1.3s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.920970 - 1.1s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.728987 - 0.9s
[CV] c1=0.08401658210095098, c2=0.01884625069711085 ..................
[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.920970 - 1.5s
[CV] c1=0.10252491344185391, c2=0.035456409715521185 .................
[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.814619 - 1.2s
[CV] c1=0.1942293390156905, c2=0.0118048238421011 ....................
[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.839369 - 1.1s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.838429 - 1.1s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.691890 - 1.1s
[CV] c1=0.489724053657197, c2=0.044922427709806804 ...................
[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.656490 - 1.2s
[CV] c1=0.037804502799856664, c2=0.17775310605580735 .................
[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.707931 - 1.2s
[CV] c1=0.48021458727568206, c2=0.024520344430852173 .................
[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.710539 - 1.2s
[CV] c1=1.1913664771508643, c2=0.02636126240604801 ...................
[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.677417 - 1.2s
[CV] c1=0.011396903498125098, c2=0.08331303274987872 .................
[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.866790 - 1.1s
[CV] c1=0.389627350050321, c2=0.20541641674647737 ....................
[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.877067 - 1.1s
[CV] c1=0.478213957506215, c2=0.020477014457446593 ...................
[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.793956 - 1.2s
[CV] c1=0.585686407327112, c2=0.012901559348345326 ...................
[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.852821 - 1.4s
[CV] c1=0.32462532886586554, c2=0.018288220546846753 .................
[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.848001 - 1.3s
[CV] c1=0.7414419018297659, c2=0.12193121091232882 ...................
[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.853988 - 1.0s
Training done in: 7.486107s
Saving training model...
Saving training model done in: 0.013334s
*********************************
Prediction done in: 0.023981s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True True
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.004035s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 hUpper False
5 hLower False
6 hGreek False
7 symb False
8 word[:1] 1
9 word 1
10 isUpper False
11 isLower False
12 isGreek False
13 isNumber True
14 -1:word PQ
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 hUpper False
7 hLower False
8 hGreek False
9 symb True
10 word[:1] d
11 word[:2] de
12 word delta-fnr
13 isUpper False
14 isLower True
15 isGreek False
16 isNumber False
17 -1:word _
18 +1:word _
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.719482 - 1.7s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.964829 - 1.8s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.671893 - 1.4s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.860861 - 1.8s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.714313 - 1.7s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.932342 - 1.5s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.893986 - 1.6s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.850267 - 1.6s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.713686 - 1.4s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.728846 - 1.7s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.715320 - 1.7s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.854753 - 1.6s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.644709 - 1.7s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.868023 - 2.1s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.628257 - 1.6s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.729114 - 1.5s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.805804 - 1.7s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.630354 - 1.3s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.714493 - 1.6s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.750968 - 1.8s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.696002 - 1.5s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.664975 - 1.4s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.745162 - 1.7s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.792078 - 1.8s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.947941 - 1.6s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.628257 - 1.4s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.718319 - 1.8s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.855472 - 1.7s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.757924 - 1.8s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.885770 - 1.9s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.885770 - 1.8s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.708131 - 1.3s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.709305 - 1.6s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.709789 - 1.9s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.854474 - 1.8s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.706850 - 1.6s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.778194 - 1.4s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.657958 - 1.7s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.718319 - 2.0s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.879698 - 1.9s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.760487 - 1.3s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.733738 - 1.8s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.666232 - 1.7s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.887504 - 2.0s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.729277 - 1.6s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.766835 - 1.6s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.868023 - 1.8s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.682610 - 1.6s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.959209 - 1.8s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.778194 - 1.8s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.885770 - 1.8s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.730987 - 1.4s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.709789 - 1.6s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.887052 - 1.7s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.779163 - 1.6s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.864078 - 1.8s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.747961 - 1.6s
[CV] c1=1.6285175067140285, c2=0.06773142195214325 ...................
[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.883968 - 1.6s
[CV] c1=0.30683200632675367, c2=0.019783947264900577 .................
[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.941969 - 1.8s
[CV] c1=0.03158220752670695, c2=0.051210940198560144 .................
[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.901159 - 1.9s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.709789 - 1.7s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.883806 - 1.6s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.849709 - 1.7s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.930418 - 1.7s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.888519 - 1.7s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.881641 - 1.8s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.887052 - 1.8s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.720815 - 1.5s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.852225 - 1.8s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.880778 - 1.4s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.715254 - 1.7s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.807056 - 1.6s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.855472 - 1.8s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.779866 - 1.7s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.943602 - 1.8s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.847994 - 1.7s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.919451 - 1.5s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.657337 - 1.7s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.876022 - 1.9s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.943015 - 1.6s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.941969 - 1.7s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.704193 - 2.0s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.729114 - 1.8s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.696480 - 1.8s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.696480 - 1.7s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.901159 - 1.7s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.737623 - 1.9s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.814578 - 1.8s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.698638 - 1.6s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.902851 - 1.7s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.893939 - 1.6s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.714493 - 1.3s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.644709 - 1.6s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.709841 - 1.9s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.718319 - 1.8s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.839790 - 1.6s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.692982 - 1.6s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.746445 - 1.7s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.667313 - 1.8s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.747466 - 1.4s
[CV] c1=0.07231471163871557, c2=0.09430964775259432 ..................
[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.884598 - 1.7s
[CV] c1=0.2858121257516539, c2=0.017143803593821803 ..................
[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.932342 - 1.8s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.703764 - 1.8s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.880433 - 1.9s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.792078 - 1.9s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.723951 - 1.5s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.715254 - 1.7s
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[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.868023 - 1.4s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.837432 - 1.7s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.655059 - 1.8s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.719074 - 1.8s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.719074 - 1.7s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.603309 - 1.3s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.787795 - 1.7s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.719482 - 1.6s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.674297 - 1.6s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.854753 - 1.7s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.849461 - 1.9s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.849461 - 1.9s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.932342 - 1.8s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.692156 - 1.8s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.714313 - 1.4s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.705001 - 1.6s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.932342 - 1.9s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.798468 - 1.7s
[CV] c1=0.48552233382782606, c2=0.16512343963590606 ..................
[CV] c1=0.48552233382782606, c2=0.16512343963590606, score=0.887504 - 1.7s
[CV] c1=0.4728739554959987, c2=0.22420666837898567 ...................
[CV] c1=0.4728739554959987, c2=0.22420666837898567, score=0.887504 - 1.5s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.880778 - 1.9s
[CV] c1=1.0979918753546847, c2=0.002918879102946894 ..................
[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.699725 - 1.3s
[CV] c1=1.9851987092826848, c2=0.05255571087688783 ...................
[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.657958 - 1.8s
[CV] c1=0.7263916143048589, c2=0.031205799626709132 ..................
[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.811024 - 1.8s
[CV] c1=0.19555004078116134, c2=0.013719557943369584 .................
[CV] c1=0.19555004078116134, c2=0.013719557943369584, score=0.873401 - 1.7s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
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[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.901764 - 1.7s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.651984 - 1.4s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.875476 - 1.8s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.706850 - 1.4s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.732294 - 1.8s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.876022 - 1.7s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.792078 - 1.9s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.719347 - 1.3s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.728846 - 1.5s
[CV] c1=0.4078998263978875, c2=0.03823537952712818 ...................
[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.746445 - 1.7s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.719074 - 1.8s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.938702 - 1.6s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.750923 - 1.7s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.854474 - 1.4s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.943602 - 1.7s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.705909 - 1.6s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.698041 - 1.7s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.699565 - 1.7s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.778194 - 1.4s
[CV] c1=0.5522760556298829, c2=0.011764289096805257 ..................
[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.887504 - 1.8s
[CV] c1=0.6094784835218059, c2=0.01690933209411638 ...................
[CV] c1=0.6094784835218059, c2=0.01690933209411638, score=0.881641 - 1.9s
[CV] c1=0.4346959767707268, c2=0.004694241666253667 ..................
[CV] c1=0.4346959767707268, c2=0.004694241666253667, score=0.882037 - 1.8s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.664975 - 1.9s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.943015 - 1.3s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.885770 - 1.7s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.843229 - 1.7s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.860861 - 1.7s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.788564 - 1.9s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.624694 - 1.3s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.888519 - 1.6s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.680329 - 1.3s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.872268 - 1.7s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.684029 - 1.6s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.891699 - 1.5s
[CV] c1=0.10648945642165056, c2=0.015449511254995961 .................
[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.792078 - 1.6s
[CV] c1=0.8236049945299427, c2=0.15208965114284034 ...................
[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.925608 - 1.7s
[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................
[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.870252 - 1.7s
[CV] c1=1.3104946340308028, c2=0.016932301174739674 ..................
[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.871212 - 1.7s
[CV] c1=0.021441360234559073, c2=0.04563400559940925 .................
[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.855704 - 1.4s
Training done in: 11.278545s
Saving training model...
Saving training model done in: 0.014307s
*********************************
Prediction done in: 0.041099s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False False
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003781s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.656490 - 1.1s
[CV] c1=1.529507873115847, c2=0.024136783344165424 ...................
[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.643620 - 1.1s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.710539 - 1.3s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.899703 - 1.3s
[CV] c1=0.02824756371284651, c2=0.0335948035118798 ...................
[CV] c1=0.02824756371284651, c2=0.0335948035118798, score=0.890667 - 1.1s
[CV] c1=0.25969741666753743, c2=0.027938172584771492 .................
[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.784613 - 1.2s
[CV] c1=0.4878310757485807, c2=0.05686345202582919 ...................
[CV] c1=0.4878310757485807, c2=0.05686345202582919, score=0.567237 - 0.9s
[CV] c1=0.06596113672627639, c2=0.005613954965247502 .................
[CV] c1=0.06596113672627639, c2=0.005613954965247502, score=0.679766 - 1.0s
[CV] c1=0.2467287269984389, c2=0.00376365828037806 ...................
[CV] c1=0.2467287269984389, c2=0.00376365828037806, score=0.710539 - 1.2s
[CV] c1=0.02824756371284651, c2=0.0335948035118798 ...................
[CV] c1=0.02824756371284651, c2=0.0335948035118798, score=0.848001 - 1.1s
[CV] c1=0.25969741666753743, c2=0.027938172584771492 .................
[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.920970 - 1.1s
[CV] c1=0.4878310757485807, c2=0.05686345202582919 ...................
[CV] c1=0.4878310757485807, c2=0.05686345202582919, score=0.918945 - 1.2s
[CV] c1=0.3926811460995468, c2=0.0013244367466887003 .................
[CV] c1=0.3926811460995468, c2=0.0013244367466887003, score=0.676244 - 1.0s
[CV] c1=0.2467287269984389, c2=0.00376365828037806 ...................
[CV] c1=0.2467287269984389, c2=0.00376365828037806, score=0.577889 - 1.0s
[CV] c1=0.20710070358327326, c2=0.014282330320157044 .................
[CV] c1=0.20710070358327326, c2=0.014282330320157044, score=0.935924 - 1.1s
[CV] c1=0.4128620881801901, c2=0.04225367471784858 ...................
[CV] c1=0.4128620881801901, c2=0.04225367471784858, score=0.723593 - 1.1s
[CV] c1=0.2505843507627238, c2=0.02792808991248863 ...................
[CV] c1=0.2505843507627238, c2=0.02792808991248863, score=0.921915 - 1.2s
[CV] c1=0.3926811460995468, c2=0.0013244367466887003 .................
[CV] c1=0.3926811460995468, c2=0.0013244367466887003, score=0.562607 - 0.8s
[CV] c1=0.2467287269984389, c2=0.00376365828037806 ...................
[CV] c1=0.2467287269984389, c2=0.00376365828037806, score=0.913072 - 0.9s
[CV] c1=0.02824756371284651, c2=0.0335948035118798 ...................
[CV] c1=0.02824756371284651, c2=0.0335948035118798, score=0.654823 - 1.0s
[CV] c1=0.25969741666753743, c2=0.027938172584771492 .................
[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.679766 - 1.0s
[CV] c1=0.4878310757485807, c2=0.05686345202582919 ...................
[CV] c1=0.4878310757485807, c2=0.05686345202582919, score=0.721334 - 1.3s
[CV] c1=0.06596113672627639, c2=0.005613954965247502 .................
[CV] c1=0.06596113672627639, c2=0.005613954965247502, score=0.866790 - 1.1s
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[CV] c1=0.6144514862830527, c2=0.07803079130334861 ...................
[CV] c1=0.6144514862830527, c2=0.07803079130334861, score=0.715320 - 1.2s
[CV] c1=0.6228806234995589, c2=0.261535114687589 .....................
[CV] c1=0.6228806234995589, c2=0.261535114687589, score=0.708066 - 1.1s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.647745 - 1.0s
[CV] c1=1.529507873115847, c2=0.024136783344165424 ...................
[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.662630 - 1.0s
[CV] c1=0.02551053031873781, c2=0.07127942992256919 ..................
[CV] c1=0.02551053031873781, c2=0.07127942992256919, score=0.946561 - 1.2s
[CV] c1=0.6144514862830527, c2=0.07803079130334861 ...................
[CV] c1=0.6144514862830527, c2=0.07803079130334861, score=0.753693 - 1.0s
[CV] c1=0.6228806234995589, c2=0.261535114687589 .....................
[CV] c1=0.6228806234995589, c2=0.261535114687589, score=0.680672 - 1.1s
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.690815 - 1.1s
[CV] c1=1.529507873115847, c2=0.024136783344165424 ...................
[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.627348 - 1.1s
[CV] c1=0.02551053031873781, c2=0.07127942992256919 ..................
[CV] c1=0.02551053031873781, c2=0.07127942992256919, score=0.848001 - 1.2s
[CV] c1=0.6144514862830527, c2=0.07803079130334861 ...................
[CV] c1=0.6144514862830527, c2=0.07803079130334861, score=0.682045 - 1.1s
[CV] c1=0.6228806234995589, c2=0.261535114687589 .....................
[CV] c1=0.6228806234995589, c2=0.261535114687589, score=0.698793 - 1.0s
[CV] c1=0.02824756371284651, c2=0.0335948035118798 ...................
[CV] c1=0.02824756371284651, c2=0.0335948035118798, score=0.607039 - 1.0s
[CV] c1=0.25969741666753743, c2=0.027938172584771492 .................
[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.867217 - 1.1s
[CV] c1=0.4878310757485807, c2=0.05686345202582919 ...................
[CV] c1=0.4878310757485807, c2=0.05686345202582919, score=0.660012 - 1.0s
[CV] c1=0.06596113672627639, c2=0.005613954965247502 .................
[CV] c1=0.06596113672627639, c2=0.005613954965247502, score=0.724515 - 1.2s
[CV] c1=0.2467287269984389, c2=0.00376365828037806 ...................
[CV] c1=0.2467287269984389, c2=0.00376365828037806, score=0.674776 - 1.0s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.601571 - 0.7s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.646881 - 1.1s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.679766 - 1.0s
[CV] c1=0.02551053031873781, c2=0.07127942992256919 ..................
[CV] c1=0.02551053031873781, c2=0.07127942992256919, score=0.867500 - 1.1s
[CV] c1=0.6144514862830527, c2=0.07803079130334861 ...................
[CV] c1=0.6144514862830527, c2=0.07803079130334861, score=0.860755 - 1.1s
[CV] c1=0.6228806234995589, c2=0.261535114687589 .....................
[CV] c1=0.6228806234995589, c2=0.261535114687589, score=0.775429 - 1.1s
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.904567 - 1.2s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.710539 - 1.2s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.852821 - 1.3s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.572450 - 0.9s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.674776 - 0.9s
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.761818 - 1.1s
[CV] c1=1.529507873115847, c2=0.024136783344165424 ...................
[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.789900 - 1.1s
[CV] c1=0.02551053031873781, c2=0.07127942992256919 ..................
[CV] c1=0.02551053031873781, c2=0.07127942992256919, score=0.895411 - 1.1s
[CV] c1=0.6144514862830527, c2=0.07803079130334861 ...................
[CV] c1=0.6144514862830527, c2=0.07803079130334861, score=0.912680 - 1.1s
[CV] c1=0.6228806234995589, c2=0.261535114687589 .....................
[CV] c1=0.6228806234995589, c2=0.261535114687589, score=0.843581 - 1.0s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.689868 - 1.1s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.921915 - 1.0s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.761418 - 1.1s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.848001 - 1.1s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.876382 - 0.9s
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.873177 - 1.3s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.869740 - 1.1s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.858883 - 1.1s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.860755 - 1.2s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.920970 - 0.8s
[CV] c1=0.6194603776098887, c2=0.003983838476166578 ..................
[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.899703 - 1.1s
[CV] c1=1.529507873115847, c2=0.024136783344165424 ...................
[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.843581 - 1.0s
[CV] c1=0.02551053031873781, c2=0.07127942992256919 ..................
[CV] c1=0.02551053031873781, c2=0.07127942992256919, score=0.906853 - 1.1s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.721334 - 1.2s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.848001 - 0.9s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.870586 - 1.3s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.572743 - 1.0s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.910647 - 1.0s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.874700 - 1.2s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.852146 - 1.0s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.686713 - 1.1s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.762808 - 1.2s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.899703 - 1.1s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.759149 - 1.1s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.906853 - 0.9s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.678288 - 1.2s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.740663 - 1.1s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.860729 - 1.3s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.920970 - 1.1s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.763058 - 0.9s
[CV] c1=1.1631641707070273, c2=0.023763063982595384 ..................
[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.548196 - 1.0s
[CV] c1=0.2526516086542792, c2=0.00238624899782224 ...................
[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.899703 - 1.1s
[CV] c1=0.4486050985597108, c2=0.00923136182458732 ...................
[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.556932 - 0.9s
[CV] c1=0.39114608628354247, c2=0.04029658321961293 ..................
[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.679766 - 1.1s
[CV] c1=0.07271681477281164, c2=0.02046865622687442 ..................
[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.720311 - 0.9s
Training done in: 7.364966s
Saving training model...
Saving training model done in: 0.014886s
*********************************
Prediction done in: 0.025883s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False False
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003701s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 -2:lemma δsoxs
5 -2:postag NN
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 -2:lemma affyexp
7 -2:postag JJ
8 +2:lemma glucose
9 +2:postag NN
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.765174 - 1.3s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.873237 - 1.3s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.849739 - 1.3s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.850404 - 1.5s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.825973 - 1.4s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.713945 - 1.5s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.930099 - 1.4s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.880074 - 1.5s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.602692 - 1.2s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.741134 - 1.3s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.814966 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.846366 - 1.3s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.946893 - 1.3s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.713945 - 1.2s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.817898 - 1.5s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.783004 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.883871 - 1.5s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.617261 - 1.2s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.580603 - 0.9s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.705309 - 1.5s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.878755 - 1.4s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.764892 - 1.3s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.883871 - 1.3s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.873237 - 1.2s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.721789 - 1.2s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.860074 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.880669 - 1.4s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.855756 - 1.4s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.588336 - 1.1s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.755640 - 1.3s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.643984 - 1.2s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.763666 - 1.3s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.846366 - 1.3s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.755267 - 1.3s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.673745 - 1.3s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.922694 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
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[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.875886 - 1.4s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.613486 - 1.3s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.624447 - 1.0s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.737002 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.930099 - 1.3s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.807783 - 1.4s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.577291 - 1.0s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.807783 - 1.3s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
[CV] c1=0.12334803790775734, c2=0.016826815569305428, score=0.855756 - 1.2s
[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
[CV] c1=1.0784241377074688, c2=0.041059790429751976, score=0.716841 - 1.4s
[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
[CV] c1=0.7489529455784063, c2=0.07012128593942421, score=0.602692 - 1.3s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.770157 - 1.3s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.828868 - 1.3s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.895825 - 1.3s
[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.602057 - 1.2s
[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
[CV] c1=0.7489529455784063, c2=0.07012128593942421, score=0.581839 - 1.0s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
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[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
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[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
[CV] c1=0.7489529455784063, c2=0.07012128593942421, score=0.707931 - 1.3s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.749874 - 1.2s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.877596 - 1.3s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
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[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
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[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.853062 - 1.3s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
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[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
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[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.620310 - 1.4s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
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[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
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[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
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[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
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[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
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[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
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[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
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[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
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[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
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[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
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[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
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[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
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[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
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[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.646087 - 1.4s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.895825 - 1.3s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.872221 - 1.4s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.764892 - 1.4s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.774690 - 1.4s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.631124 - 1.2s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.646209 - 1.1s
[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
[CV] c1=0.7489529455784063, c2=0.07012128593942421, score=0.737652 - 1.3s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
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[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.922694 - 1.2s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
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[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.721610 - 1.3s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.845960 - 1.1s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.930099 - 1.6s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.755640 - 1.4s
[CV] c1=0.17774701316807118, c2=0.012695982200445625 .................
[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.635930 - 1.2s
[CV] c1=0.10611954839898095, c2=0.006346156532999689 .................
[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.799365 - 1.3s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.586852 - 0.8s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.718403 - 1.3s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.631124 - 1.2s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.854651 - 1.4s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.775826 - 1.1s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.895825 - 1.4s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.777529 - 1.3s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
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[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
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[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
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[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
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[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
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[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
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[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
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[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
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[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
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[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
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[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
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[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
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[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
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[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
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[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.939073 - 1.3s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
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[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
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[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
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[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.673261 - 1.2s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.783004 - 1.4s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.922694 - 1.3s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.930099 - 1.3s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.755991 - 1.0s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.922694 - 1.4s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.711676 - 1.2s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.763666 - 1.3s
[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.783286 - 1.3s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.783004 - 1.2s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.883871 - 1.5s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.737002 - 1.3s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.737652 - 1.3s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.765174 - 1.2s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.603550 - 1.1s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.698500 - 1.3s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.782739 - 1.3s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
[CV] c1=0.12334803790775734, c2=0.016826815569305428, score=0.883871 - 1.7s
[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.786546 - 1.4s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.922694 - 1.1s
[CV] c1=0.7356533023470947, c2=0.0013731489455130663 .................
[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.630265 - 1.1s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.615688 - 1.2s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.645707 - 1.2s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.838090 - 1.4s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.657909 - 1.2s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.849052 - 1.0s
[CV] c1=0.48638772360527766, c2=0.06914443790613625 ..................
[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.783286 - 1.3s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.867483 - 1.5s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.830824 - 1.3s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.878755 - 1.4s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.708142 - 0.9s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.742392 - 1.6s
[CV] c1=0.6705921332964635, c2=0.014427642144010306 ..................
[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.781418 - 1.3s
[CV] c1=0.21956205153360858, c2=0.009541738536313635 .................
[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.764892 - 1.3s
[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.848575 - 1.3s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.873237 - 1.3s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.846366 - 1.3s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.845960 - 1.3s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.860961 - 1.4s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.832898 - 1.3s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.867483 - 1.1s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.843338 - 1.2s
[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................
[CV] c1=0.061878622473100685, c2=0.008830927560874847, score=0.883871 - 1.4s
[CV] c1=0.12334803790775734, c2=0.016826815569305428 .................
[CV] c1=0.12334803790775734, c2=0.016826815569305428, score=0.630065 - 1.2s
[CV] c1=1.0784241377074688, c2=0.041059790429751976 ..................
[CV] c1=1.0784241377074688, c2=0.041059790429751976, score=0.730707 - 1.4s
[CV] c1=0.7489529455784063, c2=0.07012128593942421 ...................
[CV] c1=0.7489529455784063, c2=0.07012128593942421, score=0.906931 - 1.3s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.636829 - 1.3s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.747753 - 1.2s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.707931 - 1.3s
[CV] c1=0.6555816084765733, c2=0.022533357743075463 ..................
[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.584620 - 1.1s
[CV] c1=0.5243479435689085, c2=0.020264421529990553 ..................
[CV] c1=0.5243479435689085, c2=0.020264421529990553, score=0.631124 - 1.1s
[CV] c1=0.927177018037934, c2=0.023269220013262686 ...................
[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.906931 - 1.1s
[CV] c1=1.439077844699842, c2=0.02774426387487829 ....................
[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.518811 - 1.1s
[CV] c1=0.3918550763541644, c2=0.0010997783061468906 .................
[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.660872 - 1.2s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.589040 - 1.2s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.777342 - 1.3s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.841965 - 1.1s
[CV] c1=0.14009357256950483, c2=0.009314873469817363 .................
[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.855731 - 1.3s
[CV] c1=0.5652943015138516, c2=0.0037589652831553928 .................
[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.860160 - 1.2s
[CV] c1=0.676799569030537, c2=0.05862110387649719 ....................
[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.612772 - 1.3s
[CV] c1=0.2644150178675066, c2=0.046160424707653254 ..................
[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.770299 - 1.5s
[CV] c1=0.7156254494091757, c2=0.04252905244564888 ...................
[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.776162 - 1.0s
Training done in: 8.656537s
Saving training model...
Saving training model done in: 0.013108s
*********************************
Prediction done in: 0.028636s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True False
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003860s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.903565 - 1.2s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.630985 - 1.0s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.559014 - 0.9s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.592492 - 1.1s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.582068 - 1.1s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.743125 - 1.0s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.866790 - 1.2s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.825330 - 1.1s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.596309 - 1.1s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.789900 - 1.2s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.603251 - 1.0s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.920970 - 1.1s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.870586 - 1.1s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.660504 - 1.1s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.605840 - 1.1s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.865533 - 1.2s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.906853 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.647745 - 1.1s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.649654 - 1.0s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.824341 - 1.1s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.701461 - 1.0s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.840539 - 1.2s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.712560 - 1.2s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.718275 - 1.1s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.672745 - 1.1s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.881938 - 1.1s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.703305 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.673633 - 1.0s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.568556 - 1.2s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.518602 - 1.0s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.659253 - 1.0s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.720311 - 1.2s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.677417 - 1.1s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.683547 - 1.2s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.556540 - 1.2s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.753693 - 1.2s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.601571 - 0.9s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.647745 - 0.9s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.582162 - 1.2s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.643620 - 1.2s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.550050 - 0.9s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.654823 - 1.2s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.678288 - 1.1s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.507094 - 1.1s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.614085 - 1.3s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.883954 - 1.2s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.710369 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.686713 - 1.1s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.594837 - 0.9s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.866790 - 1.1s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.740663 - 1.1s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.770846 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.677417 - 1.1s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.848001 - 1.1s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.935386 - 1.0s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.899703 - 1.2s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.608985 - 0.9s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.548196 - 0.9s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.814619 - 1.3s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.603356 - 0.9s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.843338 - 1.1s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.946561 - 1.1s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.698982 - 1.1s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.720311 - 1.1s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.652192 - 1.2s
[CV] c1=0.7431164639270406, c2=0.0027998889877337263 .................
[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.708065 - 1.1s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.766835 - 1.1s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.856715 - 1.1s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.609338 - 1.2s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.723492 - 1.2s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.721334 - 1.3s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.878773 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.568962 - 1.0s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.580569 - 1.0s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.920970 - 1.0s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.814619 - 1.1s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.848001 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.712560 - 1.2s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.920970 - 1.1s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.775757 - 1.0s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.654823 - 1.0s
[CV] c1=0.09511707500453928, c2=0.0519939941697524 ...................
[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.779725 - 1.1s
[CV] c1=1.1133560080812872, c2=0.03524217248955633 ...................
[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.686713 - 1.2s
[CV] c1=2.2946346184092543, c2=0.026838185424639973 ..................
[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.512837 - 1.0s
[CV] c1=1.4864633814895774, c2=0.07443280995437437 ...................
[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.698163 - 1.1s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.906853 - 1.1s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.611684 - 1.0s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.810738 - 1.1s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.741434 - 1.0s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.867500 - 1.2s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.920970 - 1.0s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.688789 - 1.2s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.689868 - 1.0s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.881938 - 1.1s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.741434 - 1.1s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.866790 - 1.2s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.867977 - 1.2s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.684366 - 1.0s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.906853 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.672042 - 1.0s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.848001 - 1.4s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.587654 - 0.8s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.588945 - 1.0s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.568556 - 1.0s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.692232 - 1.0s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.734092 - 1.2s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.654823 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.624832 - 1.1s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.643620 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.655168 - 1.0s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.557148 - 0.9s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.855880 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.825330 - 1.2s
[CV] c1=0.1266383951793103, c2=0.0393032467121349 ....................
[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.735607 - 1.2s
[CV] c1=0.03116962391669711, c2=0.034902897212510296 .................
[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.906853 - 1.1s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.866790 - 1.2s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.902145 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.675506 - 1.1s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.686231 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.697913 - 0.9s
[CV] c1=0.1614939954077374, c2=0.06205814047571822 ...................
[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.713945 - 1.2s
[CV] c1=0.020829028765021226, c2=0.330913244342466 ...................
[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.888112 - 1.1s
[CV] c1=1.1533562821101506, c2=0.019354995709139386 ..................
[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.870586 - 1.2s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.660504 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.815463 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.899703 - 1.2s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.906853 - 1.2s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.515324 - 0.9s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.875991 - 1.1s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.654823 - 0.8s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.708833 - 1.1s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.767606 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.804756 - 1.1s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.605600 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.720505 - 1.1s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.660012 - 1.0s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.727470 - 1.2s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.648834 - 1.1s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.779045 - 1.1s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.870586 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.721334 - 1.3s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.920970 - 1.2s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.824341 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.608719 - 0.9s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.552580 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.761418 - 1.1s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.866790 - 1.1s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.621156 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.856015 - 1.2s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.660510 - 0.8s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.854423 - 1.1s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.867500 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.668774 - 1.2s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.596309 - 1.0s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.787287 - 1.1s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.860755 - 1.2s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.674776 - 1.0s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.787287 - 1.2s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.503462 - 1.0s
[CV] c1=1.0354026125353881, c2=0.04748423868234282 ...................
[CV] c1=1.0354026125353881, c2=0.04748423868234282, score=0.830130 - 1.1s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.919762 - 1.1s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.935386 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.815463 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.720311 - 1.2s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.867500 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.679766 - 1.1s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.716313 - 1.1s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.643620 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.652192 - 1.3s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.875991 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.575822 - 0.9s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.713945 - 1.1s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.723537 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.735257 - 1.2s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.906853 - 0.9s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.770586 - 1.1s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.693714 - 1.2s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.667190 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.906853 - 1.1s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.607039 - 0.8s
[CV] c1=0.3213690128955612, c2=0.03898256391447408 ...................
[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.867217 - 1.1s
[CV] c1=0.21271540606230951, c2=0.030620357980156894 .................
[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.814619 - 1.1s
[CV] c1=1.6722766965579237, c2=0.013291004231457602 ..................
[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.607625 - 1.1s
[CV] c1=0.08475757164945485, c2=0.13819696066777126 ..................
[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.680867 - 1.1s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.848001 - 1.0s
[CV] c1=0.4084834008911277, c2=0.06619217123115333 ...................
[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.673541 - 1.1s
[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................
[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.866790 - 1.1s
[CV] c1=0.7225500746993299, c2=0.17031685283847245 ...................
[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.852672 - 1.1s
[CV] c1=2.0488638507950374, c2=0.05830217300206339 ...................
[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.778713 - 1.2s
[CV] c1=0.001922394963124772, c2=0.1166032351837375 ..................
[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.724290 - 1.1s
Training done in: 7.322848s
Saving training model...
Saving training model done in: 0.013721s
*********************************
Prediction done in: 0.023824s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True False
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003824s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 hUpper False
5 hLower False
6 hGreek False
7 symb False
8 word[:1] 1
9 -2:lemma δsoxs
10 -2:postag NN
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 hUpper False
7 hLower False
8 hGreek False
9 symb True
10 word[:1] d
11 word[:2] de
12 -2:lemma affyexp
13 -2:postag JJ
14 +2:lemma glucose
15 +2:postag NN
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.748989 - 1.5s
[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.688607 - 1.2s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.705446 - 1.3s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.844579 - 1.6s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.682226 - 1.5s
[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.701013 - 1.3s
[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.895566 - 1.8s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.719074 - 1.7s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.724487 - 1.6s
[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.868519 - 1.1s
[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.682226 - 1.4s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.947516 - 1.6s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.933155 - 1.6s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.727054 - 1.3s
[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.917847 - 1.3s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.738970 - 1.3s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.907093 - 1.6s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.868659 - 1.7s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.780640 - 1.5s
[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.683958 - 1.4s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.705265 - 1.4s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.732294 - 1.6s
[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.931297 - 1.9s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.878329 - 1.6s
[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.773191 - 1.4s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.885638 - 1.6s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.891699 - 1.7s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.673861 - 1.6s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.842875 - 1.7s
[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.868519 - 1.3s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.759154 - 1.4s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.796438 - 1.5s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.880312 - 1.8s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.734892 - 1.6s
[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.660504 - 1.1s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.748989 - 1.6s
[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
[CV] c1=0.0027865899296892344, c2=0.0322630560189459, score=0.688077 - 1.4s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.752420 - 1.6s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.754344 - 1.6s
[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.698897 - 1.1s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.914825 - 1.6s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.911961 - 1.6s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.796825 - 1.6s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.885638 - 1.7s
[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.704835 - 1.3s
[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
[CV] c1=0.25383138714597037, c2=0.04263753154943412, score=0.648856 - 1.5s
[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
[CV] c1=0.0027865899296892344, c2=0.0322630560189459, score=0.721111 - 1.5s
[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
[CV] c1=0.35338694963813927, c2=0.027153986749367698, score=0.786586 - 1.5s
[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
[CV] c1=0.07859831333888312, c2=0.07646449848130295, score=0.653316 - 1.5s
[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.673792 - 1.4s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.784018 - 1.5s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.746614 - 1.7s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.700287 - 1.5s
[CV] c1=0.6399264634452653, c2=0.014870218135147216 ..................
[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.940069 - 1.6s
[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.891699 - 1.4s
[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
[CV] c1=0.25383138714597037, c2=0.04263753154943412, score=0.730917 - 1.6s
[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
[CV] c1=0.5229213398180802, c2=0.05988470409107292, score=0.682226 - 1.4s
[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
[CV] c1=0.35338694963813927, c2=0.027153986749367698, score=0.759154 - 1.8s
[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
[CV] c1=0.07859831333888312, c2=0.07646449848130295, score=0.713594 - 1.2s
[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.893607 - 1.6s
[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.923873 - 1.6s
[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
[CV] c1=0.0027865899296892344, c2=0.0322630560189459, score=0.631616 - 1.4s
[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
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[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
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[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
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[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
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[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
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[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
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[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
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[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
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[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
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[CV] c1=0.5185417642698361, c2=0.053008807244735806 ..................
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[CV] c1=0.0027865899296892344, c2=0.0322630560189459 .................
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[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
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[CV] c1=0.07859831333888312, c2=0.07646449848130295 ..................
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[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
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[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
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[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
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[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
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[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
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[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
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[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
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[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
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[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
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[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
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[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
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[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
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[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
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[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
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[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
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[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
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[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
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[CV] c1=0.11430921774270934, c2=0.06174595493921575 ..................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.5229213398180802, c2=0.05988470409107292 ...................
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[CV] c1=1.0068963881008774, c2=0.0209795411094058 ....................
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[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
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[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
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[CV] c1=0.25383138714597037, c2=0.04263753154943412 ..................
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[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
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[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
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[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
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[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
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[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
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[CV] c1=0.35338694963813927, c2=0.027153986749367698 .................
[CV] c1=0.35338694963813927, c2=0.027153986749367698, score=0.696425 - 2.1s
[CV] c1=0.031180803180743573, c2=0.07896645089543503 .................
[CV] c1=0.031180803180743573, c2=0.07896645089543503, score=0.903099 - 1.5s
[CV] c1=1.3873487379708354, c2=0.05280678047492682 ...................
[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.629121 - 1.3s
[CV] c1=0.4188873236253328, c2=0.0026616054692428534 .................
[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.727640 - 1.7s
[CV] c1=0.15577693298267048, c2=0.06637448911598333 ..................
[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.688919 - 1.6s
[CV] c1=0.823900513809091, c2=0.0387534873299443 .....................
[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.634732 - 1.5s
[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.714227 - 1.4s
[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.736407 - 1.2s
[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.706154 - 1.6s
[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.873506 - 1.7s
[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.725229 - 1.8s
[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.914459 - 1.5s
[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.705264 - 1.0s
[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.891699 - 1.8s
[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.759154 - 1.5s
[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.881296 - 1.5s
[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.891699 - 1.6s
[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.895584 - 1.4s
[CV] c1=0.2615074589465166, c2=0.00276705652339924 ...................
[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.933576 - 1.9s
[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.727640 - 1.7s
[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.894300 - 1.7s
[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.903099 - 1.7s
[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.759154 - 1.2s
[CV] c1=0.12876611002706792, c2=0.005687634151887815 .................
[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.914459 - 1.6s
[CV] c1=0.4343684628584727, c2=0.035865115766266005 ..................
[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.926812 - 1.5s
[CV] c1=0.4187966865740437, c2=0.19166197167501114 ...................
[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.855051 - 1.6s
[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................
[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.886041 - 1.6s
[CV] c1=0.5348883068759939, c2=0.00832448452340161 ...................
[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.933155 - 1.2s
Training done in: 10.407644s
Saving training model...
Saving training model done in: 0.013260s
*********************************
Prediction done in: 0.035441s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False True
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003661s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.568777 - 0.8s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.761418 - 1.3s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.815463 - 1.1s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.761418 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.753693 - 1.1s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.651934 - 1.0s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.789190 - 1.2s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.558164 - 0.9s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.860729 - 1.2s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.794740 - 1.1s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.866790 - 0.8s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.666440 - 1.0s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.691890 - 1.0s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.824341 - 1.2s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.694072 - 1.2s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.761418 - 1.1s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.662630 - 1.3s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.703150 - 1.2s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.659253 - 1.0s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.659121 - 1.0s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.538621 - 1.0s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.712560 - 1.1s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.920970 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.852821 - 1.2s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.652192 - 0.8s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.716266 - 1.2s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.716676 - 1.2s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.867889 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.739174 - 1.2s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.723492 - 1.0s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.857493 - 1.2s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.826261 - 1.3s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.553248 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.561630 - 1.2s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.923613 - 1.2s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.843407 - 1.1s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.656999 - 1.0s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.899703 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.891760 - 1.2s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.844400 - 1.1s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.920970 - 1.2s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.555648 - 0.9s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.588673 - 1.2s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.832206 - 1.1s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.607039 - 0.9s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.843338 - 1.2s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.787287 - 1.2s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.855506 - 1.1s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.708065 - 1.3s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.741434 - 1.1s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.904567 - 1.1s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.870586 - 1.2s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.592492 - 1.0s
[CV] c1=0.7882460794764874, c2=0.008314409656759104 ..................
[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.903565 - 1.2s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.843338 - 1.2s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.631269 - 0.9s
[CV] c1=0.8830586244748654, c2=0.08016526354894071 ...................
[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.691841 - 1.1s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.775906 - 1.2s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.720311 - 1.2s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.571166 - 0.9s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.906853 - 1.1s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.856715 - 1.1s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.773116 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.654823 - 1.1s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.891760 - 1.1s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.674776 - 1.0s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.787287 - 1.2s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.660064 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.607039 - 1.0s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.747150 - 1.1s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.766379 - 1.1s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.698636 - 1.1s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.596309 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.654694 - 1.1s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.920970 - 1.2s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.721334 - 1.1s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.678696 - 1.2s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.535665 - 1.2s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.881938 - 1.2s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.852821 - 1.1s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.866790 - 1.3s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.556324 - 0.9s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.507480 - 0.9s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.848001 - 1.2s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.712255 - 1.1s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.848230 - 1.1s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.704526 - 1.2s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.757867 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.628354 - 1.0s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.935386 - 1.1s
[CV] c1=0.6043003012819512, c2=0.0016246066449729678 .................
[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.899703 - 1.2s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.716676 - 1.2s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.678203 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.730124 - 1.2s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.739174 - 1.1s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.938387 - 1.2s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.873262 - 1.2s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.778713 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.906853 - 1.1s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.687750 - 1.1s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.679766 - 1.2s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.712560 - 1.1s
[CV] c1=2.2502498485352547, c2=0.014818926001867778 ..................
[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.568556 - 1.1s
[CV] c1=0.061316816538251634, c2=0.10728243189441995 .................
[CV] c1=0.061316816538251634, c2=0.10728243189441995, score=0.875991 - 1.2s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.891760 - 1.2s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.906853 - 1.2s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.582068 - 1.1s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.562931 - 1.0s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.758770 - 1.0s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.802426 - 1.2s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.718941 - 1.1s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.861675 - 1.2s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.891760 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.906294 - 1.0s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.743125 - 1.2s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.871210 - 1.3s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.899703 - 1.0s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.694072 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.819818 - 1.1s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.871555 - 1.2s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.607625 - 1.0s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.919762 - 1.1s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.823922 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.841822 - 1.0s
[CV] c1=0.03962800005233316, c2=0.022576612705236622 .................
[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.763058 - 1.2s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.848001 - 1.3s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.656490 - 1.1s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.649303 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.704237 - 1.2s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.698636 - 1.1s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.717126 - 1.3s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.753693 - 1.1s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.852821 - 1.2s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.724515 - 0.9s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.912680 - 1.2s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.643620 - 1.1s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.643620 - 1.1s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.654823 - 1.0s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.892456 - 1.0s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.679766 - 1.0s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.741434 - 1.2s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.729308 - 1.1s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.912680 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.674703 - 1.1s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.920970 - 1.1s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.723537 - 1.3s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.682607 - 1.2s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.906853 - 1.1s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.654817 - 0.7s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.710539 - 1.1s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.598446 - 1.0s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.761818 - 1.2s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.718872 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.575917 - 1.0s
[CV] c1=0.8576127193843588, c2=0.011655958946285804 ..................
[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.836651 - 1.1s
[CV] c1=0.18334620784152844, c2=0.008065728975440238 .................
[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.741434 - 1.2s
[CV] c1=0.9896982442127485, c2=0.029349684897034673 ..................
[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.870586 - 1.3s
[CV] c1=0.7431358277276424, c2=0.011105476280036924 ..................
[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.753693 - 1.1s
[CV] c1=0.2936978694984962, c2=0.18231632927233646 ...................
[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.717219 - 1.1s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.899703 - 1.3s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.517508 - 0.9s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.788076 - 1.2s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.877650 - 1.2s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.935386 - 0.9s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.841313 - 1.2s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.673654 - 1.3s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.518602 - 1.0s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.654694 - 1.2s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.741434 - 0.9s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.863440 - 1.1s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.789900 - 1.2s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.698163 - 1.1s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.730124 - 1.0s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.664655 - 1.0s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.570419 - 0.9s
[CV] c1=0.09824882728525007, c2=0.01967357302620265 ..................
[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.920970 - 1.1s
[CV] c1=0.5517747693290754, c2=0.03723059660924028 ...................
[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.852821 - 1.2s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.720311 - 1.3s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.923613 - 0.8s
[CV] c1=0.38596509561932013, c2=0.021114690490169043 .................
[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.772136 - 1.3s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.843581 - 1.2s
[CV] c1=0.4160233685238722, c2=0.015614531623244441 ..................
[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.679766 - 1.0s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.875991 - 1.1s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.707036 - 0.9s
[CV] c1=0.6639775093102331, c2=0.05327533729445978 ...................
[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.682045 - 1.2s
[CV] c1=1.6387163642774465, c2=0.006347413830953892 ..................
[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.599660 - 1.3s
[CV] c1=1.4731035528519316, c2=0.0985918850323886 ....................
[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.605840 - 1.1s
[CV] c1=0.03993462764763037, c2=0.10539193423951572 ..................
[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.866790 - 1.2s
[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ...............
[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.927704 - 0.9s
Training done in: 7.249866s
Saving training model...
Saving training model done in: 0.014392s
*********************************
Prediction done in: 0.025039s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: False True
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003552s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 word 1
5 isUpper False
6 isLower False
7 isGreek False
8 isNumber True
9 -1:word PQ
10 -2:lemma δsoxs
11 -2:postag NN
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 word delta-fnr
7 isUpper False
8 isLower True
9 isGreek False
10 isNumber False
11 -1:word _
12 +1:word _
13 -2:lemma affyexp
14 -2:postag JJ
15 +2:lemma glucose
16 +2:postag NN
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.930099 - 1.6s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.909545 - 1.9s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.636866 - 1.5s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.766937 - 1.6s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.619815 - 1.4s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.751476 - 1.6s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.724597 - 1.5s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.788344 - 1.6s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.850760 - 1.6s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.930099 - 1.6s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.614273 - 1.2s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.630631 - 1.3s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.893154 - 1.7s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.906170 - 1.6s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.849859 - 1.5s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.711614 - 1.6s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.711518 - 1.6s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.930099 - 1.7s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.686192 - 1.4s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.856270 - 1.5s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.874769 - 1.7s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.812021 - 1.6s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.845019 - 1.6s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.765174 - 1.6s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.740712 - 1.5s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.844591 - 1.5s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.656309 - 1.6s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.734369 - 1.8s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.660529 - 1.7s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.697156 - 1.5s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.622141 - 1.2s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.767031 - 1.7s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.866790 - 1.8s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.846366 - 1.5s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.899125 - 1.5s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.750130 - 1.5s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.742502 - 1.5s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.759711 - 1.7s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.925309 - 1.6s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.771474 - 1.7s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.660529 - 1.5s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.675493 - 1.3s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.624751 - 1.4s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.883871 - 1.8s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.810990 - 1.3s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.727141 - 1.8s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.862223 - 1.5s
[CV] c1=0.038297678976678046, c2=0.1916126137406044 ..................
[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.895358 - 1.8s
[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................
[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.791491 - 1.8s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.636866 - 1.5s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.765174 - 1.6s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.737002 - 1.5s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.760794 - 1.6s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.677691 - 1.5s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.906100 - 1.5s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.860074 - 1.5s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.677691 - 1.7s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.883871 - 1.7s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.846366 - 1.3s
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.766937 - 1.6s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.690019 - 1.3s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.883871 - 1.6s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.664382 - 1.4s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.774627 - 1.5s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.879541 - 1.6s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.943287 - 1.7s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.783286 - 1.6s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.846366 - 1.7s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.695227 - 1.3s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.743170 - 1.5s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.693874 - 1.6s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.863221 - 1.7s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.769218 - 1.6s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.878755 - 1.6s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.737812 - 1.4s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.868659 - 1.8s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.742545 - 1.7s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.879541 - 1.7s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.791976 - 1.7s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.636866 - 1.4s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.909545 - 1.5s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.879280 - 1.7s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.761026 - 1.8s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.879541 - 1.6s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.832898 - 1.5s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.792472 - 1.7s
[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
[CV] c1=0.5210224789278901, c2=0.006751538594354206, score=0.892392 - 1.8s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.640002 - 1.5s
[CV] c1=0.34336652460986966, c2=0.023606219975479584 .................
[CV] c1=0.34336652460986966, c2=0.023606219975479584, score=0.900725 - 1.6s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
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[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
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[CV] c1=0.5210224789278901, c2=0.006751538594354206 ..................
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[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
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[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
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[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
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[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
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[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
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[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
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[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
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[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
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[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
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[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
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[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
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[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
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[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.670401 - 1.6s
[CV] c1=0.22991065454519655, c2=0.05704963083080379 ..................
[CV] c1=0.22991065454519655, c2=0.05704963083080379, score=0.930099 - 1.8s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.767759 - 1.3s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.757767 - 1.6s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.757767 - 1.8s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.656799 - 1.5s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.606304 - 1.4s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.769218 - 1.4s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.832898 - 1.5s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.908780 - 1.6s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.900725 - 1.7s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.710927 - 1.6s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.930099 - 1.3s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.767759 - 1.7s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.846366 - 1.6s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.765174 - 1.6s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.840999 - 1.6s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.832898 - 1.4s
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.660529 - 1.5s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.900725 - 1.7s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.760794 - 1.6s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.735050 - 1.5s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.857128 - 1.5s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.930099 - 1.6s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.930099 - 1.7s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.922694 - 1.7s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.660529 - 1.5s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.739341 - 1.3s
[CV] c1=0.16521043789445478, c2=0.12734995352729425 ..................
[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.769218 - 1.6s
[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................
[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.922694 - 1.6s
[CV] c1=0.23396239601478247, c2=0.021554630281339932 .................
[CV] c1=0.23396239601478247, c2=0.021554630281339932, score=0.766937 - 1.8s
[CV] c1=1.1131285560759827, c2=0.0789492952007081 ....................
[CV] c1=1.1131285560759827, c2=0.0789492952007081, score=0.843338 - 1.6s
[CV] c1=0.13789575918935962, c2=0.21129423093936495 ..................
[CV] c1=0.13789575918935962, c2=0.21129423093936495, score=0.896702 - 1.6s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.861675 - 1.7s
[CV] c1=0.19372696796129896, c2=0.018101673564889433 .................
[CV] c1=0.19372696796129896, c2=0.018101673564889433, score=0.804911 - 1.8s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.746808 - 1.6s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.860074 - 1.6s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.677691 - 1.3s
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.846366 - 1.6s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.797094 - 1.7s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.872550 - 1.6s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.930099 - 1.7s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.631503 - 1.0s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.732991 - 1.9s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.742545 - 1.7s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.697646 - 1.6s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.788778 - 1.8s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.783286 - 1.3s
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.771474 - 1.6s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.870647 - 1.6s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.862223 - 1.7s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.765174 - 1.5s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.878755 - 1.4s
[CV] c1=0.17002935344175654, c2=0.03048089985747861 ..................
[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.883883 - 1.6s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.903665 - 1.7s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.715035 - 1.7s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.771474 - 1.5s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.891002 - 1.4s
[CV] c1=0.7316013853643798, c2=0.25017196058094404 ...................
[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.613639 - 1.3s
[CV] c1=0.7934403590252077, c2=0.010140047052715413 ..................
[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.664382 - 1.4s
[CV] c1=1.2484765854262996, c2=0.03066474574094165 ...................
[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.709002 - 1.6s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.568876 - 1.3s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.883871 - 1.9s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.906931 - 1.2s
[CV] c1=0.14528662487494648, c2=0.20027010511973786 ..................
[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.879541 - 1.9s
[CV] c1=0.4722267453140106, c2=0.001685255428968536 ..................
[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.871207 - 1.7s
[CV] c1=1.4620038736037526, c2=0.04868337460924114 ...................
[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.803851 - 1.8s
[CV] c1=0.14069682863299926, c2=0.024714016482769777 .................
[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.697441 - 1.3s
[CV] c1=0.4862974700385636, c2=0.028075320941336974 ..................
[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.871207 - 1.4s
Training done in: 10.702919s
Saving training model...
Saving training model done in: 0.013511s
*********************************
Prediction done in: 0.037534s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True True
Report file: _v9
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003941s
{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'}
{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'}
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.739174 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
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[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
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[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
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[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
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[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
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[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
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[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
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[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
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[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
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[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
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[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
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[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
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[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
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[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
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[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
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[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
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[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
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[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
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[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
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[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
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[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
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[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
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[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
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[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
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[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.654823 - 1.1s
[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
[CV] c1=0.010916997872083896, c2=0.01703042309947876, score=0.608985 - 1.0s
[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
[CV] c1=0.11923109411090525, c2=0.08712148554319654, score=0.866790 - 1.1s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.744499 - 1.0s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.659121 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.727470 - 1.1s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.724515 - 1.1s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.659121 - 1.0s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.843581 - 1.0s
[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
[CV] c1=0.3610226719997963, c2=0.029611486118589044, score=0.899703 - 1.3s
[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
[CV] c1=0.1827955499307428, c2=0.002673779161901005, score=0.848001 - 1.1s
[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
[CV] c1=0.010916997872083896, c2=0.01703042309947876, score=0.741434 - 1.2s
[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
[CV] c1=0.11923109411090525, c2=0.08712148554319654, score=0.608719 - 0.9s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.643620 - 1.2s
[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
[CV] c1=0.005890787510878062, c2=0.06901405430753309, score=0.896193 - 1.1s
[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
[CV] c1=0.1827955499307428, c2=0.002673779161901005, score=0.924594 - 1.2s
[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
[CV] c1=0.010916997872083896, c2=0.01703042309947876, score=0.895411 - 1.1s
[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
[CV] c1=0.11923109411090525, c2=0.08712148554319654, score=0.761019 - 1.1s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.831084 - 1.0s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.852821 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.883871 - 1.1s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.838429 - 1.1s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.739174 - 1.1s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.840539 - 0.9s
[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
[CV] c1=0.14547316667964716, c2=0.04275866782811716, score=0.920970 - 1.1s
[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
[CV] c1=0.7907559657386046, c2=0.04221232955070474, score=0.725767 - 1.1s
[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
[CV] c1=0.6067183285356851, c2=0.02508677467384688, score=0.794740 - 1.1s
[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
[CV] c1=0.33894023669353496, c2=0.021885953440521758, score=0.872249 - 1.3s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.639214 - 1.1s
[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
[CV] c1=0.3610226719997963, c2=0.029611486118589044, score=0.764863 - 1.1s
[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
[CV] c1=0.0893601644204355, c2=0.024019081127496116, score=0.779725 - 1.1s
[CV] c1=0.2107941425103855, c2=0.07645318409354064 ...................
[CV] c1=0.2107941425103855, c2=0.07645318409354064, score=0.730124 - 1.2s
[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
[CV] c1=0.33894023669353496, c2=0.021885953440521758, score=0.721334 - 1.2s
[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
[CV] c1=0.48934294075061485, c2=0.059643580535587194, score=0.848001 - 1.3s
[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
[CV] c1=0.14547316667964716, c2=0.04275866782811716, score=0.906853 - 1.1s
[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
[CV] c1=0.7907559657386046, c2=0.04221232955070474, score=0.912680 - 1.1s
[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
[CV] c1=0.6067183285356851, c2=0.02508677467384688, score=0.883954 - 1.1s
[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
[CV] c1=0.33894023669353496, c2=0.021885953440521758, score=0.899703 - 1.1s
[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
[CV] c1=0.48934294075061485, c2=0.059643580535587194, score=0.919762 - 1.3s
[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
[CV] c1=0.14547316667964716, c2=0.04275866782811716, score=0.848001 - 1.2s
[CV] c1=0.1827955499307428, c2=0.002673779161901005 ..................
[CV] c1=0.1827955499307428, c2=0.002673779161901005, score=0.710539 - 1.3s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.679766 - 1.1s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.712255 - 1.1s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.720311 - 0.9s
[CV] c1=0.14547316667964716, c2=0.04275866782811716 ..................
[CV] c1=0.14547316667964716, c2=0.04275866782811716, score=0.838429 - 1.0s
[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
[CV] c1=0.7907559657386046, c2=0.04221232955070474, score=0.687750 - 1.3s
[CV] c1=0.010916997872083896, c2=0.01703042309947876 .................
[CV] c1=0.010916997872083896, c2=0.01703042309947876, score=0.935386 - 1.2s
[CV] c1=0.11923109411090525, c2=0.08712148554319654 ..................
[CV] c1=0.11923109411090525, c2=0.08712148554319654, score=0.730124 - 1.1s
[CV] c1=1.5310724688252555, c2=0.007849882070317076 ..................
[CV] c1=1.5310724688252555, c2=0.007849882070317076, score=0.672745 - 1.1s
[CV] c1=0.3610226719997963, c2=0.029611486118589044 ..................
[CV] c1=0.3610226719997963, c2=0.029611486118589044, score=0.841313 - 1.1s
[CV] c1=0.0893601644204355, c2=0.024019081127496116 ..................
[CV] c1=0.0893601644204355, c2=0.024019081127496116, score=0.920970 - 1.1s
[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
[CV] c1=0.6067183285356851, c2=0.02508677467384688, score=0.704526 - 1.2s
[CV] c1=0.33894023669353496, c2=0.021885953440521758 .................
[CV] c1=0.33894023669353496, c2=0.021885953440521758, score=0.920970 - 1.1s
[CV] c1=0.48934294075061485, c2=0.059643580535587194 .................
[CV] c1=0.48934294075061485, c2=0.059643580535587194, score=0.852821 - 1.4s
[CV] c1=0.005890787510878062, c2=0.06901405430753309 .................
[CV] c1=0.005890787510878062, c2=0.06901405430753309, score=0.607039 - 0.9s
[CV] c1=0.7907559657386046, c2=0.04221232955070474 ...................
[CV] c1=0.7907559657386046, c2=0.04221232955070474, score=0.737619 - 1.1s
[CV] c1=0.6067183285356851, c2=0.02508677467384688 ...................
[CV] c1=0.6067183285356851, c2=0.02508677467384688, score=0.761818 - 1.1s
[CV] c1=0.43870196113001303, c2=0.10254088863167253 ..................
[CV] c1=0.43870196113001303, c2=0.10254088863167253, score=0.562376 - 0.9s
[CV] c1=0.4124010091584731, c2=0.03226124445670804 ...................
[CV] c1=0.4124010091584731, c2=0.03226124445670804, score=0.784950 - 0.9s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.607039 - 0.7s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.747150 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.687454 - 1.1s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.935386 - 1.1s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.852821 - 1.1s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.660510 - 0.9s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.912680 - 1.4s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.608985 - 1.0s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.923613 - 1.2s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.878327 - 1.1s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.775757 - 0.9s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.578486 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.902145 - 1.2s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.920970 - 1.3s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.578486 - 0.9s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.866790 - 1.0s
[CV] c1=0.6805169695271499, c2=0.059941860636124 .....................
[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.794740 - 1.1s
[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................
[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.935386 - 1.2s
[CV] c1=0.11105424454358216, c2=0.015741660010216145 .................
[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.741434 - 1.1s
[CV] c1=0.6648810381927359, c2=0.08001031738332513 ...................
[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.794740 - 1.1s
[CV] c1=0.06371903845172723, c2=0.09382386151498534 ..................
[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.881938 - 1.0s
Training done in: 7.467291s
Saving training model...
Saving training model done in: 0.015227s
*********************************
Prediction done in: 0.026117s
-------------------------------- PARAMETERS --------------------------------
Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with training data set: training-data-set-70_v4.txt
Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
File with test data set: test-data-set-30_v4.txt
Exclude stop words: False
Levels: True True
Report file: _v2
Exclude symbols: False
-------------------------------- PROCESSING --------------------------------
Reading corpus...
Sentences training data: 283
Sentences test data: 122
Reading corpus done in: 0.003745s
-------------------------------- FEATURES --------------------------------
--------------------------Features Training ---------------------------
0 1
0 lemma 1
1 postag CD
2 -1:lemma pq
3 -1:postag NN
4 hUpper False
5 hLower False
6 hGreek False
7 symb False
8 word[:1] 1
9 word 1
10 isUpper False
11 isLower False
12 isGreek False
13 isNumber True
14 -1:word PQ
15 -2:lemma δsoxs
16 -2:postag NN
--------------------------- FeaturesTest -----------------------------
0 1
0 lemma delta-fnr
1 postag NN
2 -1:lemma _
3 -1:postag NN
4 +1:lemma _
5 +1:postag CD
6 hUpper False
7 hLower False
8 hGreek False
9 symb True
10 word[:1] d
11 word[:2] de
12 word delta-fnr
13 isUpper False
14 isLower True
15 isGreek False
16 isNumber False
17 -1:word _
18 +1:word _
19 -2:lemma affyexp
20 -2:postag JJ
21 +2:lemma glucose
22 +2:postag NN
Fitting 10 folds for each of 20 candidates, totalling 200 fits
[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.860686 - 1.4s
[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.856606 - 2.1s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.860686 - 1.6s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.711685 - 1.9s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.918560 - 2.1s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.715283 - 1.5s
[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.883499 - 1.9s
[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.724487 - 1.9s
[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.680522 - 1.8s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.697314 - 1.5s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.860686 - 1.5s
[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.727640 - 2.1s
[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.871735 - 1.7s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.722958 - 1.6s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.860776 - 1.9s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.795468 - 1.6s
[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.759154 - 1.9s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.855051 - 1.9s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.863709 - 1.9s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.778562 - 1.8s
[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.708096 - 1.3s
[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.727640 - 1.9s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
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[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.845435 - 2.0s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.847925 - 2.1s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.621599 - 1.6s
[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.717756 - 1.7s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
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[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
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[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.779671 - 1.9s
[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.933241 - 2.0s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.706732 - 1.8s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.750626 - 1.9s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
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[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
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[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.891699 - 2.0s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
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[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.933241 - 2.0s
[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.868519 - 1.8s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
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[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
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[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
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[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
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[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
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[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
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[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
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[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
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[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
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[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
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[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
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[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
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[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
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[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
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[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
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[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.657484 - 1.9s
[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
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[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.868519 - 1.9s
[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.790731 - 2.0s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.940922 - 1.9s
[CV] c1=0.9049035713403341, c2=0.021741456177008588 ..................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
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[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
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[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
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[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
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[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
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[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
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[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
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[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
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[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
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[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
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[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
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[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
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[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
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[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
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[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
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[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
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[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
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[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
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[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
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[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
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[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
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[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
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[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
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[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
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[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
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[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
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[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
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[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
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[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
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[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
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[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
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[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
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[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
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[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.860350 - 1.9s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.817651 - 1.8s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.657484 - 1.3s
[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.741095 - 1.8s
[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ...............
[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.906753 - 2.0s
[CV] c1=0.16114579362036052, c2=0.09197634743194505 ..................
[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.760655 - 2.3s
[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.732294 - 2.2s
[CV] c1=0.5180245113660787, c2=0.03601101440244791 ...................
[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.732929 - 2.0s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.876503 - 2.0s
[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.938643 - 2.1s
[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.775858 - 1.9s
[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.693226 - 2.0s
[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.940922 - 1.5s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.664861 - 1.8s
[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.891699 - 2.2s
[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.932866 - 2.0s
[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.836344 - 2.2s
[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.705446 - 1.5s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.775820 - 2.0s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.687710 - 2.2s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.925895 - 2.1s
[CV] c1=0.603209677420507, c2=0.0025056598967555105 ..................
[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.717098 - 1.9s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.714899 - 1.1s
[CV] c1=0.08997152792208764, c2=0.004363773952774669 .................
[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.784018 - 2.1s
[CV] c1=0.3286068152393628, c2=0.10962981701798313 ...................
[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.786699 - 2.1s
[CV] c1=0.6822425755498431, c2=0.020713938001918012 ..................
[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.743357 - 1.8s
[CV] c1=0.37575104918065877, c2=0.014068909404949474 .................
[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.932315 - 2.1s
[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.900313 - 1.9s
[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.746614 - 1.9s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.947043 - 1.9s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.868519 - 1.9s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.760289 - 1.8s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.802518 - 1.4s
[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.784987 - 1.9s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.765357 - 1.8s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.885638 - 2.0s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.776993 - 1.8s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.880312 - 1.6s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.784987 - 1.8s
[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.891699 - 1.9s
[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.891699 - 1.9s
[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.801799 - 2.0s
[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.855051 - 1.7s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.977820 - 1.9s
[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.947043 - 1.9s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.717098 - 2.1s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.880564 - 2.0s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.751956 - 1.5s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.891699 - 2.2s
[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.906414 - 2.0s
[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.868519 - 2.0s
[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.718052 - 1.6s
[CV] c1=0.14485727750148428, c2=0.21618502439248377 ..................
[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.891699 - 2.1s
[CV] c1=0.05199276558605893, c2=0.0702365499252205 ...................
[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.940922 - 2.1s
[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.795468 - 1.8s
[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.895764 - 2.1s
[CV] c1=0.8844076483955583, c2=0.11585472431298503 ...................
[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.925895 - 2.0s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.711685 - 1.6s
[CV] c1=0.1380082549956592, c2=0.015618296578657088 ..................
[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.690217 - 1.6s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.906414 - 2.0s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.860614 - 2.2s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.717051 - 1.7s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.863709 - 1.6s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.906414 - 2.0s
[CV] c1=0.06155533734282551, c2=0.11747794204884306 ..................
[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.855051 - 1.9s
[CV] c1=0.32267196716974095, c2=0.030929293399615435 .................
[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.925895 - 2.0s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.699424 - 1.9s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.821625 - 1.7s
[CV] c1=0.08369291557347798, c2=0.012233988100281703 .................
[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.908780 - 2.0s
[CV] c1=0.14146941159261275, c2=0.0623745074286256 ...................
[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.732294 - 2.2s
[CV] c1=0.5149952083751863, c2=0.020547420013119894 ..................
[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.791382 - 1.9s
[CV] c1=1.1812306284364236, c2=0.008430514440727933 ..................
[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.827582 - 1.9s
[CV] c1=0.8585868277805841, c2=0.018563372539478897 ..................
[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.795856 - 1.7s
Training done in: 12.580321s
Saving training model...
Saving training model done in: 0.013719s
*********************************
Prediction done in: 0.043038s
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.025778789677348212, 'c2': 0.0018714562014074947}
best CV score:0.8085092726655764
model size: 0.08M
best params:{'c1': 0.008401850714357223, 'c2': 0.010433611834050949}
best CV score:0.8001659242959697
model size: 0.10M
Flat F1: 0.8137583902797803
Flat F1: 0.8047780251190458
precision recall f1-score support
OD 1.000 0.405 0.577 37
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 0.880 1.000 0.936 22
Med 0.852 0.912 0.881 57
Technique 0.952 0.909 0.930 22
Med 0.897 0.912 0.904 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.920 0.742 0.821 62
Anti 1.000 0.444 0.615 9
Air 0.780 0.742 0.760 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.905 0.811 0.856 106
Gtype 0.867 0.802 0.833 106
Substrain 0.000 0.000 0.000 1
Supp 0.883 0.669 0.762 136
Supp 0.869 0.684 0.765 136
Gversion 0.000 0.000 0.000 0
avg / total 0.904 0.760 0.814 480
avg / total 0.866 0.762 0.805 480
Top likely transitions:
OD -> OD 6.458139
Agit -> Agit 6.258931
Anti -> Anti 6.237003
Temp -> Temp 6.159227
Med -> Med 5.670034
O -> O 5.195209
Air -> Air 5.178796
Gversion -> Gversion 5.056321
Gtype -> Gtype 4.897516
Phase -> Phase 4.866866
Technique -> Technique 4.086604
Supp -> Supp 3.969422
pH -> pH 2.272089
Substrain -> Gtype 1.512606
O -> Supp 1.281866
Gtype -> Supp 1.254695
Technique -> Air 1.119472
O -> Technique 1.098084
O -> Anti 0.739732
O -> Gtype 0.595581
O -> Gversion 0.361965
O -> Temp 0.359101
Gtype -> pH 0.252154
O -> Strain 0.203795
Air -> O 0.106227
Gtype -> Air 0.052216
O -> pH 0.007039
Gversion -> Supp -0.000001
pH -> Supp -0.000232
Strain -> O -0.001882
Phase -> Supp -0.055890
Phase -> Air -0.056319
OD -> Phase -0.082524
O -> Phase -0.121225
O -> OD -0.123240
Gtype -> Phase -0.163289
Temp -> O -0.187600
Med -> O -0.241653
Gtype -> Gversion -0.242298
pH -> O -0.266321
OD -> Supp -0.290317
Air -> Gtype -0.354319
Phase -> Temp -0.371875
Anti -> O -0.373128
Phase -> pH -0.374040
Phase -> Gtype -0.388060
Technique -> Gtype -0.398116
Gversion -> O -0.453455
Air -> Phase -0.500367
Supp -> Phase -0.539395
Agit -> Agit 6.023468
OD -> OD 5.987741
Anti -> Anti 5.339561
O -> O 5.206576
Temp -> Temp 5.181595
Med -> Med 5.180925
Air -> Air 4.646819
Gversion -> Gversion 4.293932
Gtype -> Gtype 4.243250
Phase -> Phase 4.214400
Supp -> Supp 4.068489
Technique -> Technique 3.260803
pH -> pH 2.779994
O -> Supp 1.733365
Substrain -> Gtype 1.597482
O -> Technique 1.105926
Gtype -> Supp 1.074709
O -> Gtype 0.988353
Technique -> Air 0.947990
O -> Anti 0.752151
O -> Temp 0.715991
Gtype -> pH 0.687911
O -> Strain 0.484049
Air -> O 0.435475
Gtype -> Air 0.237417
O -> pH 0.237401
O -> Gversion 0.212779
O -> Vess 0.076820
O -> Phase 0.037554
pH -> Gversion -0.000018
OD -> Strain -0.003457
Phase -> Strain -0.004908
Air -> Vess -0.005394
Phase -> Gversion -0.014599
Gtype -> Agit -0.016123
Gversion -> Med -0.016983
Vess -> O -0.017867
Gtype -> Strain -0.043341
Anti -> Gversion -0.044629
Agit -> Air -0.049411
Gversion -> Anti -0.055390
OD -> pH -0.057387
Gtype -> Vess -0.065585
Substrain -> Supp -0.071178
Agit -> Supp -0.075952
Phase -> O -0.085482
Air -> Substrain -0.092852
Air -> Agit -0.094494
pH -> OD -0.094754
Strain -> OD -0.101112
Top unlikely transitions:
Med -> O -0.241653
Gtype -> Gversion -0.242298
pH -> O -0.266321
OD -> Supp -0.290317
Air -> Gtype -0.354319
Phase -> Temp -0.371875
Anti -> O -0.373128
Phase -> pH -0.374040
Phase -> Gtype -0.388060
Technique -> Gtype -0.398116
Gversion -> O -0.453455
Air -> Phase -0.500367
Supp -> Phase -0.539395
O -> Med -0.558012
Technique -> O -0.563680
Technique -> pH -0.572119
OD -> Air -0.575190
Phase -> O -0.591227
Med -> Anti -0.624886
Anti -> OD -0.642709
O -> Air -0.644641
Phase -> Technique -0.707027
Supp -> pH -0.714103
Gtype -> O -0.767223
Supp -> Gversion -0.770430
Supp -> Anti -0.833703
Supp -> Technique -0.866289
Gtype -> Med -0.879350
Supp -> OD -0.892817
Agit -> O -0.961537
Phase -> Med -0.969283
Temp -> Med -1.069687
Air -> Temp -1.156985
Air -> Supp -1.269357
OD -> O -1.314886
Supp -> Air -1.325800
Technique -> OD -1.524590
OD -> Med -1.583386
Supp -> Gtype -1.630169
Gtype -> OD -1.657535
Supp -> O -1.680041
Supp -> Temp -1.709825
Air -> Med -1.823169
OD -> Gtype -1.852919
Gtype -> Anti -1.909177
Substrain -> O -1.923623
Air -> OD -2.860427
Med -> Supp -2.964145
Supp -> Med -3.290588
Phase -> OD -4.227426
Med -> Technique -0.617122
Anti -> Gtype -0.648491
Technique -> Supp -0.653349
Air -> Gtype -0.674312
Phase -> Supp -0.687180
Supp -> pH -0.691310
OD -> Temp -0.720203
Phase -> Med -0.735659
OD -> Technique -0.736152
Gtype -> Gversion -0.736973
Gtype -> Technique -0.792645
Supp -> Vess -0.796725
Gversion -> Air -0.836299
Air -> Temp -0.858957
Temp -> Med -0.902701
Air -> Phase -0.915814
Supp -> O -0.968464
Supp -> Gversion -0.977110
Med -> Air -1.000282
Supp -> Temp -1.033968
Agit -> O -1.058024
Supp -> OD -1.067605
OD -> Supp -1.103342
Phase -> Technique -1.118669
Med -> Anti -1.133071
Anti -> OD -1.138727
Gtype -> Med -1.277127
Air -> Supp -1.287339
Gtype -> Phase -1.342335
OD -> Med -1.360718
Supp -> Gtype -1.375229
Supp -> Phase -1.381910
OD -> Gtype -1.386571
Supp -> Anti -1.412562
Air -> Med -1.437236
OD -> O -1.444132
Gtype -> OD -1.484604
Supp -> Technique -1.559328
Substrain -> O -1.575494
O -> Air -1.706096
Gtype -> Anti -1.722995
Supp -> Air -1.758624
Technique -> Gtype -1.763985
Technique -> pH -1.821163
Technique -> OD -1.868841
OD -> Air -2.015499
Med -> Supp -2.311994
Air -> OD -2.334329
Supp -> Med -2.339867
Phase -> OD -3.142146
Top positive:
11.662855 Supp b'lemma:Iron'
10.511953 O b'lemma:_'
10.230310 Phase b'lemma:stationary'
9.183606 Air b'lemma:anaerobic'
9.126291 O b'lemma:1'
8.974301 Med b'lemma:MOPS'
8.702900 O b'lemma:rpob'
8.676761 Phase b'lemma:mid-log'
8.568886 Air b'lemma:aerobic'
8.230748 Technique b'lemma:chipseq'
8.195390 Technique b'lemma:ChIP-exo'
8.058605 O b'-1:lemma:tag'
7.748813 Supp b'lemma:nitrate'
7.383352 Med b'lemma:LB'
7.258212 O b'lemma:2'
7.185114 Gversion b'lemma:asm584v2'
7.171158 O b'lemma:3'
7.148092 Strain b'lemma:k-12'
7.115910 Supp b'lemma:pq'
7.026371 O b'lemma:for'
7.014323 Gtype b'lemma:arca8myc'
7.008078 Supp b'+1:lemma:\xc2\xb5m'
6.977598 Gtype b'lemma:\xce\xb4cra'
6.880186 Gtype b'lemma:flag-tag'
6.880186 Gtype b'-1:lemma:c-terminal'
6.658138 Gtype b'lemma:delta-arca'
6.634178 O b'lemma:rep3'
6.604885 O b'lemma:rep1'
6.417248 O b'lemma:rep2'
6.415638 O b'lemma:Custom'
6.361925 Gtype b'lemma:fnr8myc'
6.326103 Supp b'lemma:acetate'
6.318547 O b'-1:lemma:ChIP-exo'
6.305986 OD b'+1:lemma:stationary'
6.292137 Air b'lemma:Aerobic'
6.239583 Supp b'-1:lemma:Cra'
6.162599 Air b'-1:lemma:ChIP-Seq'
6.138632 O b'-1:lemma:0.3-0.35'
6.069303 O b'lemma:b'
6.025530 Substrain b'lemma:mg1655'
6.018017 OD b'lemma:od450'
5.968029 Anti b'lemma:none'
5.951239 Technique b'lemma:rna-seq'
5.870411 Gtype b'lemma:delta-fnr'
5.859331 Supp b'lemma:rifampicin'
5.853962 O b'lemma:with'
5.787035 Supp b'lemma:Fe'
5.696867 O b'lemma:Cra'
5.666336 Gtype b'lemma:wt'
5.634727 O b'lemma:\xcf\x8332'
5.556439 Anti b'lemma:seqa'
5.495699 Technique b'lemma:rnaseq'
5.475249 O b'lemma:-'
5.461891 O b'postag::'
5.444655 Gtype b'-1:lemma:\xe2\x88\x86'
5.439532 Supp b'lemma:nh4cl'
5.347691 Med b'+1:lemma:0.4'
5.306864 Gtype b'+1:lemma:type'
5.249286 Supp b'lemma:arginine'
5.228272 Anti b'lemma:anti-myc'
5.189623 Gtype b'lemma:\xce\xb4fur'
5.112523 Med b'lemma:lb'
5.068530 O b'lemma:chip'
5.060776 O b'lemma:CEL'
5.009251 O b'lemma:a'
4.960032 Temp b'-1:lemma:\xcf\x8332'
4.958666 O b'-1:lemma:Aerobic'
4.897653 Supp b'-1:lemma:+'
4.868444 O b'lemma:.'
4.868444 O b'postag:.'
4.830243 Supp b'lemma:glucose'
4.820752 Supp b'lemma:no3'
4.796496 Supp b'lemma:dpd'
4.791818 O b'+1:postag:RB'
4.789121 O b'-1:lemma:anaerobic'
4.777256 Temp b'-1:lemma:37'
4.758659 Technique b'-1:lemma:IP'
4.751186 Gtype b'lemma:wild-type'
4.743291 Supp b'+1:lemma:1'
4.741868 Vess b'lemma:flask'
4.741868 Vess b'-1:lemma:warm'
4.683816 O b'-1:lemma:glucose'
4.643413 Anti b'lemma:anti-rpos'
4.633816 Technique b'lemma:chip-seq'
4.629451 O b'lemma:oxyr'
4.567353 Gtype b'lemma:\xe2\x88\x86'
4.557296 Supp b'lemma:fructose'
4.556286 O b'lemma:affyexp'
4.553249 OD b'lemma:od600'
4.531615 Gtype b'lemma:type'
4.489891 O b'-1:lemma:0.3'
4.480766 O b'lemma:2-3'
4.479384 Gversion b'lemma:nc'
4.467099 Technique b'+1:lemma:chip-exo'
4.434426 Gtype b'lemma:\xce\xb4soxs'
4.430899 O b'-1:lemma:dpd'
4.412502 Strain b'+1:lemma:substr'
4.408579 O b'lemma:or'
4.394512 O b'+1:lemma:o.d.'
4.374031 O b'+1:lemma:sparging'
4.312161 Phase b'+1:lemma:for'
4.261060 O b'lemma:chip-arca'
4.215222 Air b'lemma:anerobically'
4.197581 Technique b'+1:lemma:rna-seq'
4.178924 Supp b'+1:lemma:_'
4.178128 Gversion b'lemma:chip-seq'
4.162694 Technique b'lemma:ChIP-Seq'
4.136869 Supp b'+1:lemma:hour'
4.135692 O b'+1:lemma:od600'
4.120055 O b'postag:IN'
4.088450 Gtype b'lemma:nsrr'
4.087944 Med b'-1:lemma:ml'
4.053773 Gtype b'+1:lemma:with'
4.022074 Gtype b'lemma:\xce\xb4ompr'
4.019457 Gtype b'lemma:WT'
3.994335 Gversion b'-1:lemma:nc'
3.986008 pH b'lemma:ph5'
3.986008 pH b'+1:lemma:.5'
3.963426 O b'lemma:ompr'
3.957893 Med b'+1:lemma:2.0'
3.957602 O b'-1:lemma:lb'
3.947299 Med b'+1:lemma:contain'
3.938942 Gtype b'lemma:pk4854'
3.936645 Supp b'lemma:Leu'
3.914299 Supp b'+1:lemma:2'
3.906482 O b'lemma:Fur'
3.904505 Gversion b'lemma:u00096'
3.904505 Gversion b'+1:lemma:.2'
3.885731 Technique b'-1:lemma:input'
3.877441 O b'-1:lemma:\xc2\xb0c'
3.864432 Gversion b'lemma:.2'
3.864432 Gversion b'-1:lemma:u00096'
3.854046 Substrain b'+1:lemma:phtpg'
3.853262 O b'lemma:s'
3.836382 O b'-1:lemma:type'
3.827763 O b'lemma:soxs'
3.827763 O b'lemma:soxr'
3.789271 Technique b'-1:lemma:chip-exo'
3.787785 Gtype b'lemma:deltaseqa'
3.787785 Gtype b'-1:lemma:old'
3.767682 O b'+1:lemma:43'
3.736088 Air b'lemma:Anaerobic'
3.723469 O b'lemma:argr'
3.707152 Med b'lemma:L'
3.707152 Med b'+1:lemma:broth'
3.693116 O b'lemma:purr'
3.692833 Gtype b'lemma:\xce\xb4oxyr'
3.687510 Gtype b'-1:lemma:ptac'
3.668468 Gtype b'lemma:\xce\xb4soxr'
3.661904 Supp b'lemma:Adenine'
3.646336 O b'+1:lemma:chip-seq'
3.633392 O b'lemma:Lrp'
3.623734 Supp b'lemma:nacl'
3.589169 O b'lemma:chip-fnr'
3.581632 Med b'lemma:glucose'
3.560733 Supp b'lemma:iptg'
3.552695 O b'lemma:delta'
3.509922 O b'postag:VBN'
3.445521 Med b'lemma:m63'
3.434419 Temp b'lemma:37'
3.388210 Temp b'-1:lemma:43'
3.386139 Gtype b'+1:lemma:knock-out'
3.379573 Temp b'-1:lemma:sample'
3.363114 Anti b'+1:lemma:antibody'
3.344587 Gtype b'+1:lemma:flagtag'
3.343995 Gtype b'lemma:dfnr'
3.336085 Med b'+1:lemma:minimal'
3.329171 Gtype b'-1:lemma:rpob'
3.326850 Supp b'+1:lemma:Deficient'
3.310593 Phase b'-1:lemma:until'
3.304072 O b'lemma:supplement'
3.302560 O b'+1:lemma:37'
3.285761 Gtype b'lemma:ptac'
3.282886 OD b'lemma:0.3'
3.280884 Gversion b'lemma:000913'
3.277170 Temp b'lemma:\xc2\xb0c'
3.267178 pH b'lemma:.5'
3.267178 pH b'-1:lemma:ph5'
3.266678 Air b'lemma:anaerobically'
3.258256 Med b'-1:lemma:LB'
3.245906 O b'lemma:at'
3.227428 Temp b'lemma:43'
3.174057 O b'postag:DT'
3.124069 O b'-1:lemma:000913'
3.122174 O b'-1:lemma:min'
3.116791 Air b'postag:RB'
3.107732 O b'lemma:pt7'
3.040595 Gtype b'lemma:\xce\xb4gadw'
3.006824 O b'-1:lemma:stpa'
2.984377 OD b'-1:lemma:~'
2.941221 Supp b'-1:lemma:\xc2\xb5m'
2.928646 Gversion b'lemma:_'
2.927017 Gtype b'lemma:soxs-8myc'
2.927017 Gtype b'lemma:soxr-8myc'
2.916978 O b'+1:lemma:mid-log'
2.899360 OD b'lemma:0.35'
2.886577 Supp b'+1:lemma:iptg'
2.876433 Supp b'lemma:leucine'
2.857437 Gtype b'lemma:purr-8myc'
2.854621 O b'postag:SYM'
9.100852 Phase b'lemma:stationary'
8.999666 O b'lemma:_'
7.748243 O b'lemma:1'
7.006071 Supp b'lemma:Iron'
6.641579 O b'lemma:2'
6.624553 Strain b'lemma:k-12'
6.534879 Air b'lemma:anaerobic'
6.384186 Technique b'lemma:ChIP-exo'
6.173586 Phase b'lemma:mid-log'
6.148502 Technique b'lemma:chipseq'
6.098091 Air b'lemma:aerobic'
6.023461 O b'lemma:3'
6.014984 O b'lemma:rpob'
5.860186 Air b'-1:lemma:ChIP-Seq'
5.802538 Supp b'lemma:pq'
5.638935 O b'-1:lemma:tag'
5.602314 O b'lemma:rep1'
5.589299 Gtype b'lemma:flag-tag'
5.589299 Gtype b'-1:lemma:c-terminal'
5.581884 O b'lemma:Custom'
5.540635 Gtype b'lemma:\xce\xb4cra'
5.474812 Gtype b'lemma:arca8myc'
5.435564 Gversion b'lemma:asm584v2'
5.394282 O b'lemma:rep2'
5.304494 Supp b'lemma:nh4cl'
5.296910 Supp b'lemma:nitrate'
5.214813 O b'lemma:Cra'
5.213416 O b'lemma:rep3'
5.212603 Supp b'lemma:acetate'
5.118628 Supp b'lemma:glucose'
5.066237 Gtype b'lemma:wt'
5.033217 Substrain b'lemma:mg1655'
4.964764 Gtype b'lemma:fnr8myc'
4.937549 Med b'lemma:MOPS'
4.932561 Gtype b'lemma:delta-arca'
4.932143 O b'-1:lemma:0.3-0.35'
4.874040 Med b'lemma:LB'
4.818460 O b'lemma:b'
4.732064 Technique b'lemma:rna-seq'
4.724853 Supp b'lemma:no3'
4.706345 Air b'lemma:Aerobic'
4.654200 Supp b'+1:lemma:Deficient'
4.633561 Supp b'+1:lemma:\xc2\xb5m'
4.585571 Supp b'-1:lemma:Cra'
4.563109 O b'lemma:a'
4.553217 Anti b'lemma:none'
4.530685 O b'lemma:\xcf\x8332'
4.515755 O b'lemma:with'
4.479081 Gtype b'-1:lemma:\xe2\x88\x86'
4.475079 Supp b'lemma:Fe'
4.452629 Technique b'lemma:chip-seq'
4.444236 O b'-1:lemma:Aerobic'
4.435460 Anti b'lemma:seqa'
4.292325 O b'lemma:.'
4.292325 O b'postag:.'
4.273737 O b'+1:postag:RB'
4.252089 Gtype b'lemma:delta-fnr'
4.231472 Med b'lemma:lb'
4.224780 O b'-1:lemma:ChIP-exo'
4.206346 Supp b'lemma:rifampicin'
4.199432 Supp b'lemma:dpd'
4.196830 Technique b'lemma:rnaseq'
4.150761 Gversion b'lemma:chip-seq'
4.119365 O b'lemma:CEL'
4.091076 Supp b'+1:lemma:1'
4.009950 O b'+1:lemma:od600'
3.985436 Gversion b'lemma:nc'
3.944251 O b'postag::'
3.932450 Supp b'lemma:arginine'
3.929084 OD b'lemma:od600'
3.904034 O b'postag:IN'
3.892475 OD b'lemma:od450'
3.890673 O b'-1:lemma:glucose'
3.863795 Strain b'+1:lemma:substr'
3.821365 O b'lemma:chip-arca'
3.806189 Med b'+1:lemma:0.4'
3.785919 Gtype b'lemma:type'
3.769177 Gtype b'lemma:\xce\xb4fur'
3.757933 O b'lemma:-'
3.738083 O b'lemma:at'
3.718639 O b'lemma:s'
3.712990 Vess b'lemma:flask'
3.712990 Vess b'-1:lemma:warm'
3.710102 Supp b'lemma:fructose'
3.662732 Anti b'lemma:anti-myc'
3.626865 O b'lemma:ompr'
3.624215 O b'lemma:affyexp'
3.616354 OD b'+1:lemma:stationary'
3.602114 O b'lemma:oxyr'
3.576976 O b'-1:lemma:lb'
3.569370 Gtype b'lemma:\xce\xb4soxs'
3.553173 O b'-1:lemma:anaerobic'
3.551741 Supp b'-1:lemma:+'
3.536448 Supp b'+1:lemma:2'
3.514973 Supp b'lemma:nacl'
3.503853 Supp b'+1:lemma:_'
3.482883 Air b'lemma:Anaerobic'
3.480740 O b'lemma:2-3'
3.480105 Gtype b'lemma:WT'
3.474757 Gtype b'lemma:wild-type'
3.469456 O b'lemma:argr'
3.457060 Med b'+1:lemma:2.0'
3.419049 O b'lemma:for'
3.379644 pH b'lemma:ph5'
3.379644 pH b'+1:lemma:.5'
3.367140 O b'postag:VBN'
3.356569 Gtype b'lemma:\xce\xb4ompr'
3.317528 Med b'lemma:m63'
3.306615 Supp b'lemma:Leu'
3.296772 Supp b'lemma:Adenine'
3.296739 Air b'postag:RB'
3.294576 Gtype b'lemma:nsrr'
3.286258 O b'+1:lemma:chip-seq'
3.282887 O b'lemma:purr'
3.266319 Air b'lemma:anerobically'
3.218805 Gtype b'lemma:\xe2\x88\x86'
3.190285 Med b'+1:lemma:minimal'
3.188756 Gtype b'+1:lemma:type'
3.170208 Gtype b'+1:lemma:with'
3.161736 O b'-1:lemma:type'
3.148922 O b'-1:lemma:stpa'
3.133657 Gversion b'lemma:u00096'
3.133657 Gversion b'+1:lemma:.2'
3.125085 Gversion b'lemma:.2'
3.125085 Gversion b'-1:lemma:u00096'
3.118643 Med b'-1:lemma:ml'
3.117225 Gtype b'lemma:deltaseqa'
3.117225 Gtype b'-1:lemma:old'
3.112128 O b'lemma:pt7'
3.102115 O b'lemma:Lrp'
3.099621 Technique b'lemma:ChIP-Seq'
3.081419 Air b'lemma:anaerobically'
3.067625 O b'lemma:or'
3.063004 Gversion b'lemma:000913'
3.052833 O b'lemma:Fur'
3.018143 Gtype b'lemma:pk4854'
3.011617 O b'lemma:soxs'
3.011617 O b'lemma:soxr'
3.000132 Gtype b'+1:lemma:pq'
2.985754 Gtype b'-1:lemma:ptac'
2.973552 Temp b'lemma:43'
2.963324 Gtype b'-1:lemma:rpob'
2.958448 Temp b'lemma:\xc2\xb0c'
2.953047 Gtype b'+1:lemma:flagtag'
2.940589 Temp b'-1:lemma:43'
2.931670 Air b'-1:lemma:-'
2.908980 O b'+1:lemma:pq'
2.898571 O b'+1:lemma:o.d.'
2.897413 Phase b'+1:lemma:for'
2.889124 Supp b'+1:lemma:deficient'
2.883315 Technique b'-1:lemma:IP'
2.862356 Med b'postag:NNP'
2.855084 Gtype b'lemma:dfnr'
2.854348 O b'-1:lemma:min'
2.825991 Gtype b'lemma:\xce\xb4oxyr'
2.825899 Substrain b'+1:lemma:phtpg'
2.805567 Technique b'+1:lemma:chip-exo'
2.802057 Phase b'+1:lemma:phase'
2.795215 Gtype b'lemma:\xce\xb4soxr'
2.789107 Gversion b'-1:lemma:nc'
2.785366 Gtype b'lemma:ptac'
2.776048 Temp b'-1:lemma:37'
2.774544 O b'lemma:chip-fnr'
2.770176 O b'lemma:chip'
2.760772 Temp b'lemma:37'
2.745440 O b'-1:lemma:dpd'
2.743110 Technique b'-1:lemma:input'
2.730665 Air b'+1:lemma:at'
2.727900 Anti b'lemma:anti-rpos'
2.727268 O b'+1:lemma:43'
2.717795 Supp b'lemma:iptg'
2.713876 O b'-1:lemma:0.3'
2.687853 Gtype b'+1:lemma:aerobic'
2.619262 OD b'-1:lemma:~'
2.616842 Temp b'+1:lemma:\xc2\xb0c'
2.608331 Gtype b'+1:lemma:ph5'
2.591172 Gtype b'lemma:flagtag'
2.589296 Med b'lemma:L'
2.589296 Med b'+1:lemma:broth'
2.584541 Phase b'-1:lemma:until'
2.584059 Gtype b'+1:lemma:knock-out'
2.575608 O b'-1:lemma:nh4cl'
2.574656 Technique b'-1:lemma:chip-exo'
2.564254 Med b'lemma:glucose'
2.556390 Gversion b'lemma:_'
2.554626 Air b'-1:lemma:_'
2.549785 O b'postag:SYM'
2.549729 O b'+1:lemma:mid-log'
2.543869 Air b'-1:lemma:phase'
2.541328 O b'lemma:A'
2.537440 Gtype b'-1:lemma:_'
2.525410 Supp b'lemma:leucine'
2.522615 O b'lemma:lrp'
2.522036 Gtype b'-1:lemma:express'
2.521629 O b'-1:lemma:\xc2\xb0c'
2.520010 O b'lemma:csir'
2.520010 O b'lemma:ntrc'
2.474244 Anti b'+1:lemma:antibody'
2.461694 Supp b'+1:lemma:leucine'
2.454280 O b'lemma:genotype/variation'
Top negative:
-0.011735 OD b'+1:lemma:0.4'
-0.012143 O b'+1:lemma:0.4'
-0.012737 OD b'+1:postag:DT'
-0.013567 Gtype b'+1:postag:IN'
-0.014658 Supp b'-1:postag:NN'
-0.015388 O b'+1:lemma:co2'
-0.019498 O b'+1:lemma:25'
-0.024384 O b'-1:lemma:mm'
-0.026473 OD b'+1:lemma:~'
-0.029376 Supp b'-1:lemma:and'
-0.030278 O b'lemma:\xc2\xb0c'
-0.033870 Gtype b'-1:lemma:mg1655'
-0.035964 O b'+1:lemma:rep1'
-0.036870 Anti b'-1:postag:NN'
-0.037674 Med b'-1:lemma:m63'
-0.041457 O b'-1:lemma:for'
-0.042315 O b'-1:lemma:in'
-0.043253 O b'+1:lemma:5'
-0.054536 O b'+1:lemma:antibody'
-0.056675 OD b'+1:postag:CD'
-0.057484 O b'-1:postag:VBN'
-0.057779 O b'postag:RB'
-0.061765 O b'-1:lemma:at'
-0.063699 O b'-1:lemma:of'
-0.073053 Phase b'+1:postag:NN'
-0.081144 O b'-1:lemma:o2'
-0.083185 O b'+1:lemma:-lcb-'
-0.085303 O b'lemma:o2'
-0.090545 Gversion b'-1:postag:NN'
-0.090810 Gtype b'lemma:fnr'
-0.094072 O b'-1:postag:IN'
-0.095560 O b'+1:lemma:300'
-0.095835 O b'+1:lemma:culture'
-0.099835 Gtype b'-1:postag:NN'
-0.104011 Gtype b'-1:postag:DT'
-0.104295 O b'-1:lemma:-lrb-'
-0.104392 O b'+1:postag:CD'
-0.106605 O b'lemma:e.'
-0.114926 O b'lemma:aerobically'
-0.123054 Supp b'-1:lemma:-'
-0.124613 O b'-1:postag:-LRB-'
-0.130629 O b'lemma:lb'
-0.135809 O b'-1:lemma:delta'
-0.137484 O b'+1:lemma:delta'
-0.145435 O b'-1:lemma:30'
-0.147772 Phase b'lemma:pahse'
-0.151829 O b'-1:lemma:e.'
-0.152470 Phase b'+1:lemma:pahse'
-0.153511 O b'+1:lemma:arginine'
-0.156235 Temp b'-1:postag:IN'
-0.165736 O b'lemma:n2'
-0.167320 O b'lemma:m63'
-0.171593 O b'lemma:mg1655'
-0.171854 O b'lemma:mg/ml'
-0.171854 O b'-1:lemma:150'
-0.172097 O b'+1:lemma:grow'
-0.174184 O b'+1:lemma:-rrb-'
-0.176692 O b'lemma:medium'
-0.190407 O b'-1:lemma:n2'
-0.193709 Technique b'-1:lemma::'
-0.197195 Supp b'+1:lemma:rifampicin'
-0.199110 Supp b'+1:lemma:acetate'
-0.211904 Supp b'lemma:and'
-0.212434 O b'-1:lemma:fresh'
-0.215208 Med b'+1:postag:CC'
-0.223718 Supp b'+1:postag:VBN'
-0.225529 Gtype b'+1:lemma:\xe2\x88\x86'
-0.227506 O b'-1:lemma:iptg'
-0.228252 O b'lemma:grow'
-0.244665 O b'+1:postag:-RRB-'
-0.248414 Phase b'-1:lemma:at'
-0.252297 O b'lemma:co2'
-0.262234 O b'+1:lemma:until'
-0.264339 Med b'+1:postag:NNS'
-0.271018 Supp b'lemma:2'
-0.271420 O b'+1:lemma:mm'
-0.274442 Air b'-1:lemma:or'
-0.275533 Air b'+1:postag:NNP'
-0.282985 O b'lemma:k-12'
-0.283867 pH b'postag:NN'
-0.289565 O b'+1:postag:IN'
-0.292519 Gtype b'postag:CD'
-0.299546 Supp b'-1:postag:VBG'
-0.302599 Supp b'-1:postag:NNP'
-0.304446 OD b'+1:postag:NN'
-0.304579 O b'-1:lemma:0.1'
-0.308132 O b'lemma:30'
-0.315401 O b'+1:postag:VBG'
-0.328419 O b'lemma:\xe2\x88\x86'
-0.334410 O b'+1:lemma:phase'
-0.339050 Med b'postag:CD'
-0.339573 O b'lemma:cell'
-0.349122 Gversion b'+1:postag:NN'
-0.350590 O b'+1:lemma:cell'
-0.353274 O b'-1:lemma:from'
-0.356173 O b'-1:lemma:minimal'
-0.365952 Technique b'-1:postag::'
-0.377481 O b'lemma:m9'
-0.387016 O b'-1:lemma:um'
-0.387016 O b'+1:lemma:paraquat'
-0.396762 O b'lemma:minimal'
-0.399415 Med b'+1:postag:IN'
-0.400174 O b'-1:lemma:.'
-0.400174 O b'-1:postag:.'
-0.405899 Gtype b'+1:lemma:fnr'
-0.420549 Supp b'+1:postag:IN'
-0.426457 Temp b'postag:NN'
-0.443672 Med b'+1:postag:NN'
-0.454874 O b'-1:lemma:with'
-0.455975 O b'-1:lemma:od600'
-0.460725 O b'lemma:od600'
-0.476927 O b'lemma:purify'
-0.513975 O b'lemma:glucose'
-0.514369 O b'+1:lemma:shake'
-0.516980 O b'lemma:anaerobic'
-0.543673 O b'+1:lemma:dissolve'
-0.575481 OD b'+1:postag:CC'
-0.575983 O b'+1:lemma:%'
-0.578458 O b'+1:lemma:\xc2\xb0c'
-0.579234 O b'+1:lemma:.'
-0.579234 O b'+1:postag:.'
-0.590831 O b'-1:lemma:until'
-0.593646 O b'+1:lemma:minimal'
-0.598050 O b'-1:lemma:rifampicin'
-0.599013 Anti b'+1:postag:JJ'
-0.600816 O b'-1:lemma:grow'
-0.609501 O b'+1:postag:NNS'
-0.616694 O b'lemma:mid-log'
-0.622505 OD b'lemma:-lrb-'
-0.681173 Temp b'postag:JJ'
-0.682190 O b'lemma:\xce\xb4fur'
-0.683721 Phase b'-1:postag:NN'
-0.699842 O b'-1:lemma:cra'
-0.699863 O b'+1:lemma:or'
-0.706770 OD b'postag:-LRB-'
-0.726480 Anti b'+1:lemma:anti-fur'
-0.739377 O b'+1:lemma:0.3'
-0.759701 O b'lemma:0.2'
-0.767286 O b'-1:lemma:mid-log'
-0.769781 O b'lemma:dissolve'
-0.773573 O b'+1:lemma:_'
-0.796461 OD b'postag:JJ'
-0.804019 O b'+1:lemma:fecl2'
-0.817322 O b'+1:lemma:c'
-0.823112 O b'-1:lemma:0.2'
-0.856156 O b'lemma:37'
-0.874673 O b'-1:lemma:ml'
-0.897793 O b'lemma:dpd'
-0.928954 O b'lemma:0.3'
-0.935642 O b'lemma:media'
-0.953224 Supp b'postag:CC'
-0.962174 O b'lemma:150'
-0.962174 O b'+1:lemma:mg/ml'
-0.991546 Temp b'+1:lemma:to'
-0.991546 Temp b'+1:postag:TO'
-0.996229 O b'-1:lemma:co2'
-1.000642 O b'lemma:of'
-1.005860 O b'-1:postag::'
-1.099013 O b'lemma:20'
-1.117230 O b'-1:lemma:~'
-1.139604 Air b'postag:NN'
-1.144681 OD b'+1:lemma:and'
-1.201437 O b'-1:lemma:dissolve'
-1.201437 O b'+1:lemma:methanol'
-1.236667 O b'-1:lemma:sample'
-1.244866 O b'lemma:wt'
-1.252945 O b'+1:lemma:g/l'
-1.255778 O b'-1:lemma:37'
-1.264177 Med b'-1:postag:IN'
-1.288204 Supp b'-1:lemma:%'
-1.302552 O b'lemma:0.1'
-1.371688 O b'lemma:anaerobically'
-1.410598 O b'lemma:phase'
-1.489551 O b'+1:lemma:+'
-1.506032 O b'+1:lemma:supplement'
-1.532398 O b'lemma:2h'
-1.532398 O b'-1:lemma:additional'
-1.534894 Air b'+1:postag:JJ'
-1.548281 O b'+1:lemma:in'
-1.565843 Anti b'postag:NNP'
-1.638452 O b'postag:VBP'
-1.657980 O b'lemma:rifampicin'
-1.822232 O b'+1:lemma:at'
-1.836234 O b'-1:postag:VBG'
-1.854980 O b'-1:lemma:IP'
-1.925222 O b'-1:lemma:2'
-1.936575 O b'lemma:fecl2'
-1.945977 Air b'-1:postag:JJ'
-2.044512 O b'-1:lemma:nsrr'
-2.267485 Phase b'-1:postag:JJ'
-2.297463 O b'-1:lemma:rpob'
-2.299343 O b'+1:lemma:hour'
-2.321612 O b'lemma:methanol'
-2.467134 O b'-1:lemma:ompr'
-2.690673 Supp b'postag:JJ'
-3.133082 O b'+1:lemma:2'
-3.547425 Phase b'postag:JJ'
-3.603436 O b'+1:lemma:1'
-4.365017 O b'-1:lemma:_'
-5.016691 O b'-1:lemma::'
-0.120022 Gtype b'-1:postag:,'
-0.120523 O b'-1:lemma:in'
-0.122664 O b'+1:lemma:sample'
-0.127328 O b'+1:lemma:mm'
-0.133270 OD b'+1:postag:CD'
-0.138198 O b'-1:lemma:affinity'
-0.142281 O b'lemma:paraquat'
-0.145257 O b'+1:lemma:-rrb-'
-0.146006 Supp b'lemma:2'
-0.150887 Anti b'-1:postag:NN'
-0.154225 Gtype b'lemma:_'
-0.158596 Gtype b'+1:postag:NNS'
-0.161604 O b'-1:postag:IN'
-0.163779 Gtype b'+1:lemma:b'
-0.166301 O b'-1:lemma:chip-exo'
-0.167220 O b'-1:lemma:of'
-0.171664 O b'-1:lemma:-lrb-'
-0.180434 Gversion b'+1:postag:NN'
-0.192357 O b'lemma:o2'
-0.202260 O b'lemma:e.'
-0.206741 Gtype b'+1:lemma:a'
-0.208788 O b'+1:postag:-RRB-'
-0.212004 O b'-1:lemma:e.'
-0.218110 O b'-1:postag:-LRB-'
-0.235338 O b'+1:lemma:antibody'
-0.236328 O b'+1:lemma:b'
-0.239367 Anti b'+1:postag:JJ'
-0.249593 Gtype b'-1:lemma:mg1655'
-0.249870 Supp b'-1:postag:NNP'
-0.251500 O b'+1:lemma:delta'
-0.252232 Supp b'+1:postag:IN'
-0.256537 O b'-1:lemma:20'
-0.258317 O b'lemma:grow'
-0.269042 O b'lemma:medium'
-0.273182 Temp b'-1:postag:IN'
-0.274173 Gtype b'-1:postag:CD'
-0.280038 O b'lemma:8'
-0.280993 O b'lemma:n2'
-0.288611 Supp b'-1:lemma:-'
-0.293962 Gtype b'lemma:ompr'
-0.301245 Strain b'+1:postag:NN'
-0.303251 Med b'-1:lemma:MOPS'
-0.306188 O b'-1:lemma:0.1'
-0.306847 O b'-1:lemma:n2'
-0.308913 O b'+1:lemma:0.4'
-0.314484 Temp b'postag:JJ'
-0.318718 Med b'+1:postag:IN'
-0.318797 Gtype b'postag:NNS'
-0.319631 Supp b'+1:lemma:glucose'
-0.321045 O b'lemma:m63'
-0.324374 O b'lemma:aerobically'
-0.325816 O b'lemma:30'
-0.326188 Med b'-1:postag:CD'
-0.329836 Phase b'-1:lemma:at'
-0.332152 O b'+1:postag:VB'
-0.332842 Med b'postag:CD'
-0.334256 O b'lemma:co2'
-0.334810 O b'lemma:minimal'
-0.342218 O b'+1:lemma:minimal'
-0.349745 Gtype b'+1:lemma:2'
-0.351934 Supp b'lemma:and'
-0.354493 O b'-1:lemma:minimal'
-0.358012 O b'lemma:mg1655'
-0.358237 O b'+1:lemma:.'
-0.358237 O b'+1:postag:.'
-0.363596 O b'-1:lemma:rna'
-0.370839 O b'+1:lemma:2.0'
-0.375043 Supp b'-1:postag:NN'
-0.376200 O b'-1:lemma:with'
-0.392061 O b'+1:lemma:cell'
-0.395304 O b'-1:lemma:g/l'
-0.395511 Technique b'-1:lemma::'
-0.397546 O b'+1:lemma:shake'
-0.401170 O b'lemma:mg/ml'
-0.401170 O b'-1:lemma:150'
-0.409541 O b'-1:lemma:um'
-0.409541 O b'+1:lemma:paraquat'
-0.409762 O b'+1:lemma:from'
-0.419746 O b'+1:lemma:300'
-0.421010 O b'lemma:\xc2\xb0c'
-0.434499 O b'lemma:of'
-0.436286 O b'postag:RB'
-0.439656 Med b'+1:postag:NN'
-0.444355 O b'+1:lemma:dissolve'
-0.452235 O b'+1:lemma:until'
-0.455261 O b'lemma:nacl'
-0.456077 O b'lemma:glucose'
-0.463464 O b'-1:lemma:grow'
-0.463968 O b'-1:lemma:fresh'
-0.464076 Phase b'-1:postag:NN'
-0.486872 O b'-1:lemma:rifampicin'
-0.523137 O b'+1:postag:IN'
-0.525151 Technique b'-1:postag::'
-0.531783 O b'+1:lemma:phase'
-0.538887 OD b'+1:postag:NN'
-0.555616 O b'+1:lemma:or'
-0.565115 O b'+1:lemma:strain'
-0.566606 O b'lemma:od600'
-0.578470 Gtype b'-1:postag:SYM'
-0.578637 OD b'lemma:-lrb-'
-0.601008 Med b'+1:postag:NNS'
-0.607701 Med b'postag:-LRB-'
-0.612346 O b'-1:lemma:od600'
-0.613297 O b'+1:lemma:%'
-0.632846 O b'lemma:dissolve'
-0.636917 O b'-1:lemma:cra'
-0.637702 O b'+1:lemma:_'
-0.645606 pH b'postag:NN'
-0.660680 Supp b'postag:CC'
-0.661544 O b'lemma:phase'
-0.663541 O b'-1:lemma:co2'
-0.666296 Temp b'-1:lemma:\xc2\xb0c'
-0.668061 Temp b'postag:NN'
-0.677959 O b'-1:lemma:from'
-0.689244 Air b'-1:postag:NNP'
-0.689646 OD b'postag:-LRB-'
-0.695039 O b'-1:lemma:30'
-0.695571 Anti b'+1:lemma:anti-fur'
-0.716001 O b'-1:lemma:~'
-0.731399 O b'lemma:150'
-0.731399 O b'+1:lemma:mg/ml'
-0.739656 Gtype b'+1:lemma:\xe2\x88\x86'
-0.759740 Supp b'+1:postag:VBN'
-0.763772 O b'+1:lemma:Aerobic'
-0.766890 O b'-1:lemma:\xe2\x88\x86'
-0.766971 O b'-1:lemma:mid-log'
-0.768804 OD b'+1:lemma:and'
-0.768894 O b'+1:lemma:\xc2\xb0c'
-0.776396 Med b'lemma:-lrb-'
-0.781865 Supp b'+1:lemma:rifampicin'
-0.809383 O b'-1:lemma:until'
-0.873765 Med b'-1:postag:IN'
-0.887188 O b'-1:lemma:0.2'
-0.914214 OD b'+1:postag:CC'
-0.937224 O b'+1:lemma:c'
-0.951430 O b'+1:lemma:arginine'
-0.975038 O b'lemma:20'
-0.984860 O b'lemma:dpd'
-0.995326 Gtype b'-1:postag:DT'
-0.997365 O b'lemma:mid-log'
-1.001839 O b'-1:lemma:1'
-1.007082 Phase b'-1:postag:JJ'
-1.016639 O b'+1:postag:NNS'
-1.024920 O b'lemma:k-12'
-1.035792 Gtype b'lemma:delta'
-1.035978 O b'lemma:anaerobically'
-1.046001 O b'lemma:media'
-1.073102 O b'+1:lemma:fecl2'
-1.102636 Temp b'+1:lemma:to'
-1.102636 Temp b'+1:postag:TO'
-1.121716 Supp b'+1:lemma:acetate'
-1.138292 O b'+1:lemma:supplement'
-1.168057 O b'lemma:purify'
-1.184745 O b'lemma:anaerobic'
-1.205475 O b'+1:lemma:rep1'
-1.215530 O b'lemma:2h'
-1.215530 O b'-1:lemma:additional'
-1.234334 Air b'-1:postag:JJ'
-1.241734 O b'+1:lemma:0.3'
-1.301983 O b'-1:lemma:dissolve'
-1.301983 O b'+1:lemma:methanol'
-1.303550 O b'lemma:0.3'
-1.345097 O b'lemma:0.1'
-1.379870 Supp b'-1:postag:VBG'
-1.382375 O b'+1:lemma:at'
-1.396032 O b'lemma:\xe2\x88\x86'
-1.417143 O b'+1:lemma:in'
-1.417204 O b'lemma:0.2'
-1.503850 OD b'postag:JJ'
-1.525722 O b'lemma:\xce\xb4fur'
-1.542072 Air b'postag:NN'
-1.579787 O b'lemma:37'
-1.621701 O b'-1:lemma:ml'
-1.630192 O b'-1:lemma:sample'
-1.655725 O b'-1:lemma:rpob'
-1.681294 O b'+1:postag:VBG'
-1.700082 Air b'+1:postag:JJ'
-1.700251 O b'lemma:fecl2'
-1.715116 O b'-1:postag:VBG'
-1.721605 O b'lemma:wt'
-1.755559 O b'-1:lemma:IP'
-1.757192 O b'-1:postag::'
-1.825748 O b'+1:lemma:g/l'
-1.826698 Supp b'-1:lemma:%'
-1.900808 O b'-1:lemma:ompr'
-1.900850 Supp b'postag:JJ'
-2.012610 O b'lemma:methanol'
-2.081277 Anti b'postag:NNP'
-2.159396 O b'-1:lemma:nsrr'
-2.166881 O b'postag:VBP'
-2.270620 O b'lemma:rifampicin'
-2.391350 O b'-1:lemma:2'
-2.579475 O b'+1:lemma:2'
-2.672474 O b'-1:lemma:37'
-2.981970 O b'+1:lemma:1'
-3.081557 O b'+1:lemma:hour'
-3.094094 O b'+1:lemma:+'
-3.525755 Phase b'postag:JJ'
-3.662675 O b'-1:lemma:_'
-4.650283 O b'-1:lemma::'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.014516456694382724, 'c2': 0.020326963729101803}
best CV score:0.7978697547192418
model size: 0.10M
Flat F1: 0.7980283470747447
precision recall f1-score support
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.897 0.912 0.904 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.862 0.764 0.810 106
Substrain 0.000 0.000 0.000 1
Supp 0.869 0.684 0.765 136
Gversion 0.000 0.000 0.000 0
avg / total 0.861 0.754 0.798 480
Top likely transitions:
OD -> OD 5.560370
Med -> Med 5.323219
Agit -> Agit 5.320147
Anti -> Anti 5.296542
Temp -> Temp 5.103287
O -> O 4.922938
Air -> Air 4.793927
Gversion -> Gversion 4.409724
Phase -> Phase 4.282790
Gtype -> Gtype 4.185033
Supp -> Supp 3.873567
Technique -> Technique 3.092187
pH -> pH 2.533873
Substrain -> Gtype 2.083775
O -> Supp 1.586928
Gtype -> Supp 1.409951
O -> Technique 1.210201
Air -> O 1.150012
O -> Gtype 1.137322
Technique -> Air 0.988159
O -> Temp 0.874873
Gtype -> pH 0.834090
O -> Anti 0.676973
Gtype -> Air 0.351268
O -> pH 0.312385
O -> Gversion 0.250755
O -> Strain 0.242825
Med -> O 0.156921
Phase -> O 0.156793
O -> Vess 0.116805
Strain -> O 0.014803
Phase -> Anti -0.000003
O -> Med -0.000752
Temp -> O -0.003264
Anti -> Gversion -0.005246
Substrain -> OD -0.006112
Anti -> O -0.012910
Vess -> Temp -0.013445
Gtype -> Strain -0.014292
Gtype -> Agit -0.018808
Agit -> Air -0.019198
pH -> Gversion -0.019841
Gtype -> Vess -0.027646
Anti -> pH -0.041855
Supp -> Substrain -0.048654
pH -> O -0.051317
pH -> Temp -0.051548
OD -> Strain -0.053471
Technique -> Phase -0.059693
Air -> Anti -0.065992
Top unlikely transitions:
Gversion -> Technique -0.391299
Gversion -> Supp -0.406688
Technique -> Gversion -0.428288
Supp -> Vess -0.430488
Phase -> Supp -0.437798
Technique -> O -0.448599
Air -> Gtype -0.476159
Anti -> Gtype -0.500852
Supp -> pH -0.583991
Air -> Temp -0.602302
OD -> Anti -0.617350
Gversion -> Air -0.617810
OD -> Technique -0.621252
Gtype -> Phase -0.623518
Gtype -> Technique -0.650072
OD -> Supp -0.671572
Technique -> Supp -0.688870
Supp -> Phase -0.709665
Air -> Med -0.773311
Med -> Air -0.783002
Gtype -> Gversion -0.797279
Anti -> OD -0.803027
Supp -> Temp -0.806667
OD -> Temp -0.831917
Gtype -> Med -0.857691
Supp -> Anti -0.870891
Supp -> Gversion -0.871973
Phase -> Technique -0.889830
Air -> Supp -0.929944
OD -> Med -0.949017
Temp -> Med -0.966397
Agit -> O -1.011105
Gtype -> Anti -1.040477
Supp -> Gtype -1.040776
Supp -> Technique -1.044847
Supp -> OD -1.045914
OD -> O -1.090042
O -> Air -1.160281
OD -> Air -1.213400
OD -> Gtype -1.220713
Supp -> Air -1.227062
Air -> OD -1.334679
Technique -> Gtype -1.446717
Substrain -> O -1.450017
Gtype -> OD -1.452352
Supp -> Med -1.509084
Technique -> pH -1.527185
Technique -> OD -1.622827
Med -> Supp -2.072342
Phase -> OD -2.635203
Top positive:
7.689893 O b'lemma:_'
6.547225 O b'lemma:1'
6.266708 Phase b'lemma:stationary'
6.090095 Supp b'lemma:Iron'
5.988669 Air b'lemma:anaerobic'
5.820969 O b'lemma:2'
5.673994 Strain b'lemma:k-12'
5.616058 Technique b'lemma:ChIP-exo'
5.566871 Technique b'lemma:chipseq'
5.425819 O b'lemma:rpob'
5.405712 Air b'lemma:aerobic'
5.246162 Phase b'lemma:mid-log'
5.241102 O b'lemma:3'
5.223694 Supp b'lemma:pq'
4.895058 Gtype b'lemma:arca8myc'
4.866546 O b'lemma:rep1'
4.849967 Gtype b'lemma:flag-tag'
4.849967 Gtype b'-1:lemma:c-terminal'
4.824569 Supp b'lemma:nh4cl'
4.797323 Gtype b'lemma:\xce\xb4cra'
4.775172 Gversion b'lemma:asm584v2'
4.709551 O b'lemma:Cra'
4.640113 O b'lemma:rep2'
4.639482 Supp b'lemma:glucose'
4.557425 Air b'-1:lemma:ChIP-Seq'
4.515191 O b'-1:lemma:tag'
4.493134 Substrain b'lemma:mg1655'
4.481774 O b'lemma:rep3'
4.480956 Med b'lemma:MOPS'
4.471922 Gtype b'lemma:wt'
4.376044 Supp b'lemma:acetate'
4.334523 Med b'lemma:lb'
4.283076 Supp b'+1:lemma:\xc2\xb5m'
4.262932 Supp b'lemma:nitrate'
4.214237 Gtype b'lemma:delta-arca'
4.182534 Med b'lemma:LB'
4.133282 Supp b'lemma:no3'
4.105821 Technique b'lemma:rna-seq'
4.070487 Gtype b'lemma:fnr8myc'
4.070471 Air b'lemma:Aerobic'
4.038314 O b'-1:lemma:Aerobic'
4.015333 Anti b'lemma:none'
3.997371 O b'lemma:b'
3.963707 O b'postag:IN'
3.955535 O b'lemma:a'
3.955270 Gtype b'-1:lemma:\xe2\x88\x86'
3.924171 Supp b'lemma:Fe'
3.902126 Anti b'lemma:seqa'
3.896361 O b'lemma:\xcf\x8332'
3.864684 Technique b'lemma:chip-seq'
3.813831 Technique b'lemma:rnaseq'
3.720604 Supp b'-1:lemma:Cra'
3.706354 O b'lemma:.'
3.706354 O b'postag:.'
3.645774 Gtype b'lemma:delta-fnr'
3.637816 O b'+1:postag:RB'
3.621220 Supp b'lemma:dpd'
3.613509 O b'lemma:CEL'
3.579889 O b'postag::'
3.569191 Supp b'+1:lemma:Deficient'
3.564359 O b'-1:lemma:ChIP-exo'
3.554295 Gversion b'lemma:chip-seq'
3.542155 Supp b'lemma:rifampicin'
3.526053 Supp b'lemma:fructose'
3.521805 O b'lemma:Custom'
3.473156 OD b'lemma:od450'
3.342102 Air b'postag:RB'
3.326021 Gtype b'+1:lemma:with'
3.297006 O b'lemma:with'
3.288934 Med b'lemma:m63'
3.287331 Supp b'lemma:arginine'
3.278166 Supp b'+1:lemma:1'
3.240003 Med b'+1:lemma:0.4'
3.218381 O b'lemma:-'
3.216059 Gtype b'lemma:type'
3.202503 Gtype b'lemma:\xce\xb4fur'
3.194189 Gtype b'+1:lemma:type'
3.193082 O b'-1:lemma:0.3-0.35'
3.189850 OD b'lemma:od600'
3.166033 O b'-1:lemma:glucose'
3.165613 O b'lemma:chip-arca'
3.154829 Vess b'lemma:flask'
3.154829 Vess b'-1:lemma:warm'
3.153229 O b'lemma:oxyr'
3.147911 Supp b'-1:lemma:+'
3.129038 Anti b'lemma:anti-myc'
3.109625 O b'lemma:s'
3.097715 Gtype b'lemma:\xe2\x88\x86'
3.093620 O b'lemma:ompr'
3.084476 O b'lemma:affyexp'
3.081752 Gtype b'lemma:wild-type'
3.079295 Gversion b'lemma:nc'
3.078281 Temp b'lemma:\xc2\xb0c'
3.063891 Gtype b'lemma:WT'
3.052218 pH b'lemma:ph5'
3.052218 pH b'+1:lemma:.5'
3.037788 O b'+1:lemma:anti-fur'
3.014541 Gtype b'lemma:\xce\xb4soxs'
3.011193 O b'+1:lemma:od600'
3.008729 O b'lemma:argr'
3.008102 O b'-1:lemma:lb'
2.997116 Strain b'+1:lemma:substr'
2.984041 Supp b'+1:lemma:hour'
2.972494 O b'-1:lemma:anaerobic'
2.971809 O b'+1:lemma:mid-log'
2.955837 Gtype b'lemma:nsrr'
2.926831 O b'lemma:purr'
2.916380 Gversion b'lemma:.2'
2.916380 Gversion b'-1:lemma:u00096'
2.905573 Air b'lemma:Anaerobic'
2.889288 O b'postag:VBN'
2.860540 O b'-1:lemma:stpa'
2.860204 Gversion b'lemma:u00096'
2.860204 Gversion b'+1:lemma:.2'
2.852943 Gtype b'lemma:\xce\xb4ompr'
2.843988 Technique b'lemma:ChIP-Seq'
2.824246 O b'+1:lemma:pq'
2.822786 Supp b'+1:lemma:2'
2.803844 Supp b'lemma:Leu'
2.775354 O b'lemma:or'
2.765101 O b'lemma:for'
2.762328 Gversion b'lemma:000913'
2.728995 Supp b'+1:lemma:_'
2.717013 Gtype b'lemma:ptac'
2.710470 Supp b'lemma:nacl'
2.700499 Gversion b'-1:lemma:nc'
2.693007 O b'lemma:Lrp'
2.666936 Supp b'lemma:Adenine'
2.666749 Gtype b'lemma:deltaseqa'
2.666749 Gtype b'-1:lemma:old'
2.666456 Technique b'-1:lemma:IP'
2.657018 Gtype b'-1:lemma:ptac'
2.656609 O b'+1:lemma:chip-seq'
2.651756 Phase b'lemma:phase'
2.645047 Med b'+1:lemma:2.0'
2.635317 O b'lemma:at'
2.634819 O b'-1:lemma:type'
2.630111 Temp b'-1:lemma:37'
2.603214 Gtype b'-1:lemma:rpob'
2.591068 Phase b'+1:lemma:for'
2.583108 O b'lemma:soxs'
2.583108 O b'lemma:soxr'
2.582233 Med b'+1:lemma:minimal'
2.581503 OD b'+1:lemma:stationary'
2.578479 Gtype b'+1:lemma:pq'
2.546464 O b'lemma:Fur'
2.517595 O b'postag:SYM'
2.510648 Gtype b'+1:lemma:flagtag'
2.478430 Gtype b'lemma:pk4854'
2.476858 O b'lemma:chip'
2.476469 Temp b'lemma:43'
2.467259 Anti b'+1:lemma:antibody'
2.464347 Gtype b'lemma:\xce\xb4oxyr'
2.456036 Technique b'-1:lemma:input'
2.439409 Air b'lemma:anerobically'
2.439013 Supp b'lemma:iptg'
2.427281 Phase b'-1:lemma:until'
2.422079 O b'lemma:pt7'
2.420462 Gtype b'lemma:\xce\xb4soxr'
2.412058 O b'+1:lemma:o.d.'
2.408051 Gtype b'+1:lemma:aerobic'
2.394275 O b'lemma:2-3'
2.382935 Air b'+1:lemma:at'
2.372931 Technique b'-1:lemma:chip-exo'
2.369521 Anti b'lemma:anti-rpos'
2.363747 Substrain b'+1:lemma:phtpg'
2.362943 O b'lemma:chip-fnr'
2.354731 Med b'-1:lemma:ml'
2.334266 Temp b'-1:lemma:43'
2.309210 Gtype b'-1:lemma:nsrr'
2.303678 Med b'postag:NNP'
2.285357 O b'+1:lemma:43'
2.282215 Air b'-1:lemma:-'
2.273224 Gversion b'+1:lemma:000913'
2.271839 Air b'-1:postag::'
2.266287 Technique b'+1:lemma:chip-exo'
2.264396 Med b'lemma:L'
2.264396 Med b'+1:lemma:broth'
2.262410 Air b'lemma:anaerobically'
2.203015 Gtype b'lemma:dfnr'
2.189315 pH b'lemma:.5'
2.189315 pH b'-1:lemma:ph5'
2.188404 Med b'lemma:glucose'
2.187878 Gtype b'-1:lemma:_'
2.186093 O b'postag:CC'
2.181846 Vess b'-1:postag:VBN'
2.178752 O b'-1:lemma:0.3'
2.171387 O b'lemma:culture'
2.168119 Gtype b'+1:lemma:ph5'
2.151683 Gtype b'lemma:flagtag'
2.151117 Supp b'+1:lemma:respiratory'
2.148355 Technique b'postag:NNP'
2.143403 Supp b'+1:lemma:leucine'
2.130979 O b'lemma:A'
2.126486 O b'-1:lemma:dpd'
2.125151 O b'lemma:genotype/variation'
2.124402 Air b'-1:lemma:_'
2.119304 Gtype b'-1:lemma:express'
2.116025 O b'-1:lemma:\xc2\xb0c'
2.113245 Med b'-1:lemma:LB'
Top negative:
-0.149474 O b'-1:lemma:150'
-0.156324 Supp b'+1:lemma:glucose'
-0.166525 O b'+1:lemma:or'
-0.166657 Gtype b'+1:lemma:cra'
-0.169192 Air b'postag:CD'
-0.171249 O b'-1:lemma:delta'
-0.175879 Gtype b'lemma:ompr'
-0.178610 O b'-1:lemma:-lrb-'
-0.179471 O b'+1:lemma:mm'
-0.183332 O b'lemma:e.'
-0.187133 O b'lemma:paraquat'
-0.187912 O b'-1:lemma:purify'
-0.190418 O b'-1:lemma:of'
-0.193237 O b'-1:lemma:the'
-0.196917 Gtype b'-1:lemma:,'
-0.196917 Gtype b'-1:postag:,'
-0.207686 O b'-1:postag:VBP'
-0.211483 Gtype b'-1:lemma:-lrb-'
-0.212783 O b'lemma:aerobically'
-0.213130 O b'-1:lemma:e.'
-0.215721 O b'+1:postag:-RRB-'
-0.215839 Supp b'+1:postag:IN'
-0.218911 Supp b'lemma:and'
-0.223065 Med b'+1:lemma:media'
-0.225231 Gtype b'lemma:control'
-0.230542 Supp b'-1:postag:NN'
-0.230830 O b'-1:postag:-LRB-'
-0.235271 Gtype b'-1:lemma:mg1655'
-0.251142 Med b'-1:postag:NN'
-0.251447 Temp b'-1:postag:IN'
-0.253195 O b'+1:lemma:from'
-0.254622 Gtype b'postag:CD'
-0.254892 O b'lemma:lb'
-0.256765 O b'-1:lemma:300'
-0.260131 Gtype b'+1:lemma:a'
-0.260302 Med b'-1:postag:CD'
-0.260618 O b'+1:lemma:antibody'
-0.264891 O b'lemma:m63'
-0.266272 O b'+1:lemma:.'
-0.266272 O b'+1:postag:.'
-0.266629 O b'-1:lemma:with'
-0.268778 Med b'-1:lemma:MOPS'
-0.269344 Phase b'-1:lemma:at'
-0.269854 Gtype b'+1:lemma:2'
-0.272035 Gtype b'postag:NNS'
-0.274858 O b'-1:lemma:minimal'
-0.277854 O b'lemma:n2'
-0.278065 O b'lemma:grow'
-0.278999 O b'lemma:8'
-0.281569 Med b'+1:postag:NNS'
-0.293395 O b'lemma:minimal'
-0.295919 O b'-1:lemma:mm'
-0.305450 Gtype b'+1:lemma:b'
-0.305852 Gtype b'+1:postag:NNS'
-0.307660 Supp b'postag:CC'
-0.307762 Technique b'-1:lemma::'
-0.307991 OD b'+1:lemma:in'
-0.317047 O b'-1:lemma:rna'
-0.320066 O b'lemma:co2'
-0.325889 O b'+1:lemma:0.4'
-0.328270 O b'+1:lemma:-lcb-'
-0.339366 O b'-1:lemma:n2'
-0.341156 Temp b'postag:JJ'
-0.344639 Gtype b'lemma:_'
-0.356368 Gtype b'-1:postag:CD'
-0.357550 O b'lemma:30'
-0.367269 O b'postag:RB'
-0.374575 O b'-1:lemma:0.1'
-0.377633 O b'+1:postag:IN'
-0.390722 O b'+1:lemma:delta'
-0.393066 O b'-1:lemma:iptg'
-0.393438 O b'-1:lemma:20'
-0.397913 Technique b'-1:postag::'
-0.402618 O b'-1:lemma:chip-exo'
-0.404112 O b'-1:lemma:grow'
-0.409921 Anti b'+1:postag:JJ'
-0.417260 O b'-1:lemma:g/l'
-0.428925 O b'lemma:glucose'
-0.432215 Med b'+1:postag:IN'
-0.434983 OD b'+1:postag:NN'
-0.441704 O b'+1:lemma:phase'
-0.446493 O b'+1:lemma:shake'
-0.450617 O b'-1:lemma:30'
-0.457886 O b'+1:lemma:%'
-0.468431 OD b'+1:postag:CC'
-0.468469 O b'lemma:of'
-0.472653 O b'+1:lemma:cell'
-0.473701 Temp b'-1:lemma:\xc2\xb0c'
-0.476616 O b'-1:lemma:cra'
-0.480503 O b'+1:lemma:dissolve'
-0.480603 Med b'lemma:-lrb-'
-0.484800 OD b'+1:lemma:and'
-0.485490 O b'+1:lemma:_'
-0.489193 O b'-1:lemma:affinity'
-0.501511 O b'+1:lemma:strain'
-0.503046 O b'lemma:\xc2\xb0c'
-0.519614 O b'+1:lemma:until'
-0.520710 O b'lemma:nacl'
-0.522191 Gtype b'+1:lemma:\xe2\x88\x86'
-0.533499 Med b'postag:CD'
-0.534388 O b'-1:lemma:um'
-0.534388 O b'+1:lemma:paraquat'
-0.534863 pH b'postag:NN'
-0.548817 O b'+1:lemma:300'
-0.557597 O b'-1:lemma:o2'
-0.560591 O b'-1:lemma:mid-log'
-0.563679 O b'-1:lemma:rifampicin'
-0.578432 O b'lemma:phase'
-0.584471 O b'-1:lemma:from'
-0.585725 Air b'-1:lemma:or'
-0.594033 O b'-1:lemma:fresh'
-0.597339 Med b'postag:-LRB-'
-0.604705 OD b'lemma:-lrb-'
-0.615198 O b'-1:lemma:od600'
-0.623443 Supp b'+1:postag:VBN'
-0.646640 O b'+1:lemma:Aerobic'
-0.653308 O b'+1:lemma:b'
-0.657858 Supp b'-1:postag:VBG'
-0.666631 Gtype b'-1:postag:SYM'
-0.704110 OD b'postag:-LRB-'
-0.706773 Gtype b'-1:postag:DT'
-0.707294 O b'lemma:mg1655'
-0.715679 Supp b'+1:lemma:rifampicin'
-0.720336 O b'lemma:dissolve'
-0.723788 O b'+1:lemma:c'
-0.727949 O b'+1:lemma:rep1'
-0.753817 O b'lemma:150'
-0.753817 O b'+1:lemma:mg/ml'
-0.778468 O b'+1:lemma:arginine'
-0.780795 O b'lemma:purify'
-0.809568 Med b'-1:postag:IN'
-0.813987 O b'+1:postag:NNS'
-0.838649 Temp b'+1:lemma:to'
-0.838649 Temp b'+1:postag:TO'
-0.849944 Temp b'postag:NN'
-0.860992 O b'+1:lemma:\xc2\xb0c'
-0.865219 O b'-1:lemma:1'
-0.874261 O b'-1:lemma:\xe2\x88\x86'
-0.881565 O b'-1:lemma:~'
-0.915657 Supp b'-1:lemma:%'
-0.928703 Anti b'+1:lemma:anti-fur'
-0.960297 O b'lemma:20'
-0.970042 O b'+1:lemma:0.3'
-0.979767 O b'lemma:anaerobically'
-0.987659 O b'-1:lemma:co2'
-0.993540 O b'-1:lemma:0.2'
-0.993726 OD b'postag:JJ'
-1.006779 O b'lemma:dpd'
-1.009452 O b'lemma:mid-log'
-1.021860 O b'-1:lemma:until'
-1.039817 Air b'-1:postag:JJ'
-1.045265 O b'lemma:od600'
-1.056795 O b'lemma:media'
-1.088631 O b'+1:lemma:fecl2'
-1.105343 O b'lemma:anaerobic'
-1.112271 O b'lemma:0.2'
-1.113717 O b'lemma:0.3'
-1.126838 O b'lemma:\xe2\x88\x86'
-1.130388 O b'lemma:0.1'
-1.131645 O b'+1:lemma:supplement'
-1.150779 O b'lemma:fecl2'
-1.165447 Phase b'-1:postag:JJ'
-1.167544 Supp b'+1:lemma:acetate'
-1.170520 Gtype b'lemma:delta'
-1.179414 O b'-1:lemma:dissolve'
-1.179414 O b'+1:lemma:methanol'
-1.248724 O b'lemma:2h'
-1.248724 O b'-1:lemma:additional'
-1.254425 O b'+1:lemma:in'
-1.288356 O b'+1:postag:VBG'
-1.296222 O b'+1:lemma:at'
-1.331987 O b'+1:lemma:g/l'
-1.341740 O b'-1:lemma:sample'
-1.346196 O b'-1:postag:VBG'
-1.378677 O b'lemma:\xce\xb4fur'
-1.510150 O b'-1:lemma:ml'
-1.524262 O b'-1:lemma:ompr'
-1.555514 Air b'postag:NN'
-1.598034 O b'-1:postag::'
-1.620081 O b'-1:lemma:rpob'
-1.620254 O b'lemma:k-12'
-1.654660 Supp b'postag:JJ'
-1.689276 O b'-1:lemma:37'
-1.759178 Anti b'postag:NNP'
-1.772606 Air b'+1:postag:JJ'
-1.784898 O b'-1:lemma:nsrr'
-1.793413 O b'lemma:37'
-1.813616 O b'lemma:wt'
-1.828954 O b'postag:VBP'
-1.829052 O b'lemma:methanol'
-1.928972 O b'-1:lemma:IP'
-1.940994 Phase b'postag:JJ'
-1.956302 O b'lemma:rifampicin'
-1.960859 O b'+1:lemma:hour'
-2.041737 O b'-1:lemma:2'
-2.306261 O b'+1:lemma:2'
-2.397974 O b'+1:lemma:+'
-2.892885 O b'+1:lemma:1'
-3.539807 O b'-1:lemma:_'
-3.548713 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.17443878436909793, 'c2': 0.025545309300829405}
best CV score:0.8013809966284335
model size: 0.07M
Flat F1: 0.7888604569464981
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.889 0.842 0.865 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.863 0.774 0.816 106
Substrain 0.000 0.000 0.000 1
Supp 0.865 0.662 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.876 0.735 0.789 480
Top likely transitions:
Agit -> Agit 6.306877
OD -> OD 6.147632
Temp -> Temp 5.545039
Anti -> Anti 5.171893
Med -> Med 5.147638
Air -> Air 4.902392
Phase -> Phase 4.459229
O -> O 4.458501
Gtype -> Gtype 4.423121
Gversion -> Gversion 4.364069
Supp -> Supp 4.020395
Technique -> Technique 3.591576
O -> Supp 2.031115
Gtype -> Supp 1.883986
pH -> pH 1.853329
Air -> O 1.713991
Substrain -> Gtype 1.583252
O -> Gtype 1.310027
O -> Technique 1.273208
O -> Anti 0.815027
Technique -> Air 0.812634
O -> Temp 0.731105
Med -> O 0.704800
Temp -> O 0.557160
Gtype -> pH 0.523657
O -> Gversion 0.472268
Supp -> O 0.279601
Gtype -> Air 0.238299
Phase -> O 0.228824
OD -> Phase 0.203194
O -> Med 0.116408
O -> Phase 0.053144
O -> OD 0.051079
O -> Strain 0.044893
Anti -> O 0.000291
Supp -> OD -0.000005
Anti -> OD -0.000026
Technique -> O -0.000302
Supp -> Technique -0.017197
Gtype -> Gversion -0.044939
Gtype -> O -0.049058
Supp -> Gversion -0.122184
Supp -> Gtype -0.141890
Technique -> OD -0.217801
OD -> Med -0.233349
Gtype -> Med -0.266427
OD -> Gtype -0.270554
OD -> Air -0.350613
Supp -> Air -0.370520
Gtype -> Anti -0.385968
Top unlikely transitions:
Supp -> Supp 4.020395
Technique -> Technique 3.591576
O -> Supp 2.031115
Gtype -> Supp 1.883986
pH -> pH 1.853329
Air -> O 1.713991
Substrain -> Gtype 1.583252
O -> Gtype 1.310027
O -> Technique 1.273208
O -> Anti 0.815027
Technique -> Air 0.812634
O -> Temp 0.731105
Med -> O 0.704800
Temp -> O 0.557160
Gtype -> pH 0.523657
O -> Gversion 0.472268
Supp -> O 0.279601
Gtype -> Air 0.238299
Phase -> O 0.228824
OD -> Phase 0.203194
O -> Med 0.116408
O -> Phase 0.053144
O -> OD 0.051079
O -> Strain 0.044893
Anti -> O 0.000291
Supp -> OD -0.000005
Anti -> OD -0.000026
Technique -> O -0.000302
Supp -> Technique -0.017197
Gtype -> Gversion -0.044939
Gtype -> O -0.049058
Supp -> Gversion -0.122184
Supp -> Gtype -0.141890
Technique -> OD -0.217801
OD -> Med -0.233349
Gtype -> Med -0.266427
OD -> Gtype -0.270554
OD -> Air -0.350613
Supp -> Air -0.370520
Gtype -> Anti -0.385968
OD -> O -0.418172
Technique -> pH -0.477927
Technique -> Gtype -0.483798
Agit -> O -0.566238
Gtype -> OD -0.640169
O -> Air -0.714813
Substrain -> O -0.787403
Supp -> Med -1.021657
Med -> Supp -1.114839
Phase -> OD -1.698506
Top positive:
7.703197 O b'lemma:_'
6.586493 O b'lemma:1'
6.452806 Supp b'lemma:Iron'
6.361401 Air b'lemma:anaerobic'
5.975656 Air b'lemma:aerobic'
5.920948 Technique b'lemma:ChIP-exo'
5.738728 Strain b'lemma:k-12'
5.658145 Phase b'lemma:stationary'
5.415422 O b'lemma:2'
5.410677 O b'lemma:rpob'
5.181966 Technique b'lemma:chipseq'
5.121249 Air b'-1:lemma:ChIP-Seq'
5.109143 Phase b'lemma:mid-log'
5.088706 O b'lemma:3'
4.962756 Supp b'lemma:nitrate'
4.946743 Supp b'lemma:pq'
4.905311 O b'postag:IN'
4.838793 Substrain b'lemma:mg1655'
4.488840 Gtype b'lemma:flag-tag'
4.488840 Gtype b'-1:lemma:c-terminal'
4.477738 Gversion b'lemma:asm584v2'
4.418207 O b'lemma:rep1'
4.390936 Supp b'lemma:nh4cl'
4.364183 Gtype b'-1:lemma:\xe2\x88\x86'
4.354227 Gtype b'lemma:\xce\xb4cra'
4.193812 Air b'lemma:Aerobic'
4.171274 Supp b'lemma:glucose'
4.140212 O b'lemma:\xcf\x8332'
4.133873 Supp b'+1:lemma:\xc2\xb5m'
4.133709 O b'lemma:rep2'
4.094915 Med b'lemma:MOPS'
4.091880 O b'postag::'
4.082369 O b'-1:lemma:tag'
4.079739 Med b'lemma:lb'
4.056839 OD b'lemma:od600'
4.039045 Gtype b'lemma:wt'
3.989316 O b'lemma:Cra'
3.968660 Gtype b'lemma:arca8myc'
3.943132 O b'lemma:rep3'
3.855516 Gversion b'lemma:nc'
3.813109 Med b'lemma:LB'
3.805010 O b'-1:lemma:ChIP-exo'
3.780222 O b'lemma:b'
3.776136 O b'lemma:a'
3.762332 Gtype b'lemma:type'
3.692897 Technique b'lemma:ChIP-Seq'
3.685963 Technique b'lemma:rna-seq'
3.608750 Supp b'lemma:Fe'
3.602563 Gtype b'lemma:delta-arca'
3.582946 O b'lemma:Custom'
3.480469 Supp b'lemma:acetate'
3.448871 Gversion b'-1:lemma:nc'
3.444218 Supp b'lemma:no3'
3.437906 O b'lemma:.'
3.437906 O b'postag:.'
3.437516 Technique b'lemma:chip-seq'
3.389135 Supp b'lemma:rifampicin'
3.386406 Gtype b'lemma:fnr8myc'
3.384496 Gtype b'+1:lemma:type'
3.339808 OD b'lemma:od450'
3.322726 Gtype b'lemma:\xe2\x88\x86'
3.304027 Technique b'lemma:rnaseq'
3.256257 O b'+1:lemma:od600'
3.186356 Anti b'lemma:none'
3.181887 Supp b'lemma:dpd'
3.055580 O b'-1:lemma:0.3-0.35'
3.054658 Gtype b'lemma:nsrr'
3.030442 Gtype b'lemma:\xce\xb4fur'
3.025184 Vess b'lemma:flask'
3.025184 Vess b'-1:lemma:warm'
3.015874 O b'lemma:-'
3.009573 Gtype b'lemma:delta-fnr'
2.998130 Supp b'lemma:fructose'
2.988910 O b'lemma:CEL'
2.974937 pH b'lemma:ph5'
2.974937 pH b'+1:lemma:.5'
2.972759 Anti b'+1:lemma:antibody'
2.954856 Med b'+1:lemma:0.4'
2.925179 O b'-1:lemma:Aerobic'
2.879985 O b'+1:postag:RB'
2.865018 Med b'lemma:m63'
2.859747 Gtype b'-1:lemma:ptac'
2.825574 Supp b'lemma:arginine'
2.824511 Technique b'-1:lemma:IP'
2.817298 O b'postag:VBN'
2.813172 Anti b'lemma:seqa'
2.812406 Temp b'-1:lemma:sample'
2.763158 Gtype b'+1:lemma:with'
2.754310 Temp b'lemma:\xc2\xb0c'
2.723063 Supp b'+1:lemma:1'
2.675834 O b'-1:lemma:type'
2.671720 Gversion b'lemma:chip-seq'
2.653537 Supp b'+1:lemma:2'
2.650378 Air b'postag:RB'
2.631712 Gversion b'lemma:u00096'
2.631712 Gversion b'+1:lemma:.2'
2.616863 Supp b'-1:lemma:Cra'
2.615297 O b'-1:lemma:glucose'
2.613954 O b'postag:CC'
2.589956 Gtype b'-1:lemma:rpob'
2.582195 O b'lemma:with'
2.540802 Gversion b'lemma:000913'
2.539352 Gversion b'lemma:.2'
2.539352 Gversion b'-1:lemma:u00096'
2.503419 O b'lemma:chip'
2.502065 Gtype b'lemma:wild-type'
2.487392 Technique b'+1:lemma:chip-exo'
2.444920 Supp b'+1:lemma:_'
2.434479 O b'-1:lemma:anaerobic'
2.420671 Gtype b'+1:lemma:flagtag'
2.395183 Anti b'lemma:anti-myc'
2.385218 Strain b'+1:lemma:substr'
2.376772 Technique b'-1:lemma:chip-exo'
2.348313 pH b'lemma:.5'
2.348313 pH b'-1:lemma:ph5'
2.334952 O b'lemma:s'
2.334641 OD b'+1:lemma:stationary'
2.330137 O b'-1:lemma:lb'
2.298914 Air b'lemma:anaerobically'
2.282617 Supp b'+1:lemma:Deficient'
2.277510 Med b'+1:lemma:minimal'
2.269747 Gtype b'+1:lemma:ph5'
2.257564 Gtype b'+1:lemma:pq'
2.256911 Temp b'-1:lemma:\xcf\x8332'
2.250901 O b'lemma:oxyr'
2.238383 Gtype b'lemma:\xce\xb4ompr'
2.232015 Gtype b'lemma:\xce\xb4soxs'
2.222768 O b'lemma:or'
2.220103 Supp b'-1:lemma:+'
2.219418 Anti b'lemma:anti-rpos'
2.194736 Supp b'+1:lemma:hour'
2.194499 Temp b'-1:lemma:43'
2.187158 O b'postag:VBG'
2.177204 pH b'+1:postag:CD'
2.177114 Supp b'-1:lemma:\xc2\xb5m'
2.151093 Supp b'lemma:nacl'
2.140203 O b'postag:DT'
2.133179 O b'+1:lemma:pq'
2.131891 O b'-1:lemma:stpa'
2.130575 O b'lemma:affyexp'
2.104996 Temp b'lemma:43'
2.103942 O b'+1:lemma:o.d.'
2.096381 O b'lemma:for'
2.062239 O b'-1:lemma:l1'
2.059181 O b'-1:lemma:\xc2\xb0c'
2.056904 O b'lemma:chip-arca'
2.042964 Gtype b'+1:lemma:_'
2.037784 Air b'-1:lemma:-'
2.033829 Supp b'lemma:20'
2.033283 Med b'+1:lemma:2.0'
2.030340 Air b'lemma:Anaerobic'
2.025461 O b'lemma:culture'
2.007866 O b'+1:postag:NNP'
2.002694 Supp b'lemma:Leu'
1.992014 O b'lemma:Lrp'
1.990572 O b'+1:lemma:anti-fur'
1.987491 O b'lemma:ompr'
1.985226 Temp b'lemma:37'
1.981458 Temp b'+1:lemma:\xc2\xb0c'
1.954050 Technique b'-1:lemma:input'
1.939671 Air b'-1:lemma:co2'
1.933847 Gtype b'lemma:deltaseqa'
1.933847 Gtype b'-1:lemma:old'
1.924772 O b'+1:lemma:chip-seq'
1.922580 O b'lemma:Fur'
1.920444 Med b'-1:lemma:ml'
1.908513 Gtype b'lemma:ptac'
1.905616 Supp b'lemma:iptg'
1.905043 Temp b'-1:lemma:37'
1.897096 Med b'lemma:glucose'
1.886045 O b'+1:lemma:mid-log'
1.880944 Supp b'lemma:Adenine'
1.871549 Med b'lemma:media'
1.869057 Gtype b'lemma:pk4854'
1.858978 Med b'lemma:L'
1.858978 Med b'+1:lemma:broth'
1.849089 O b'postag:SYM'
1.839128 Supp b'lemma:0.2'
1.838608 Gtype b'lemma:WT'
1.834443 Gtype b'+1:lemma:aerobic'
1.824894 Supp b'-1:lemma:with'
1.808905 O b'+1:lemma:43'
1.792132 O b'lemma:argr'
1.790393 Substrain b'+1:lemma:phtpg'
1.786085 Phase b'-1:lemma:mid-log'
1.783387 Technique b'+1:lemma:rna-seq'
1.774887 Med b'+1:lemma:g/l'
1.773397 Gtype b'-1:lemma:nsrr'
1.771235 Med b'+1:lemma:+'
1.769899 Med b'postag:NNP'
1.769535 Supp b'-1:lemma:mm'
1.763683 Air b'-1:postag:CD'
1.752886 OD b'-1:lemma:~'
1.749965 O b'-1:lemma:0.3'
1.744858 O b'lemma:at'
1.740916 Supp b'lemma:methanol'
1.740449 O b'lemma:purr'
1.740138 Technique b'-1:lemma:_'
1.740075 Med b'lemma:broth'
1.740075 Med b'-1:lemma:L'
Top negative:
0.000364 O b'+1:lemma:70'
0.000332 O b'lemma:fresh'
0.000294 O b'postag:VBZ'
0.000275 OD b'+1:lemma::'
0.000231 O b'-1:lemma:medium'
0.000175 Supp b'-1:postag:NN'
0.000167 Gtype b'-1:lemma:hn'
0.000124 O b'lemma:coli'
0.000118 OD b'+1:lemma:0.15'
0.000060 Agit b'+1:postag:VBG'
0.000056 Gversion b'-1:lemma:the'
0.000042 O b'+1:lemma:harvest'
0.000028 Med b'-1:lemma:2'
0.000027 O b'lemma:w0002'
0.000026 Anti b'-1:postag:NN'
0.000024 O b'lemma:50'
0.000023 O b'-1:lemma:with'
0.000023 Supp b'lemma:hour'
0.000022 Gversion b'-1:postag:DT'
0.000013 Supp b'-1:lemma:10'
0.000010 Substrain b'postag:NN'
0.000009 Med b'lemma:-rrb-'
0.000009 Gtype b'lemma:the'
0.000009 O b'+1:lemma:um'
0.000007 Med b'postag:-RRB-'
0.000004 Gtype b'-1:lemma:cra'
-0.000007 Med b'+1:postag:NNS'
-0.000009 O b'+1:lemma:aerobically'
-0.000017 O b'-1:lemma:until'
-0.000027 O b'lemma:mg/ml'
-0.000027 O b'-1:lemma:150'
-0.000033 O b'+1:lemma:phase'
-0.000034 OD b'postag:NNS'
-0.000193 Gversion b'-1:postag:NN'
-0.000221 O b'lemma:glucose'
-0.000434 O b'lemma:purify'
-0.000743 O b'+1:lemma:grow'
-0.000794 O b'lemma:\xc2\xb0c'
-0.000895 O b'+1:lemma:mg1655'
-0.001880 O b'+1:lemma:n2'
-0.003127 O b'-1:lemma:20'
-0.003470 Gtype b'-1:postag:NN'
-0.003555 Temp b'-1:lemma:\xc2\xb0c'
-0.003698 OD b'+1:lemma:0.4'
-0.003819 Gtype b'+1:postag:NNS'
-0.003979 OD b'-1:postag:DT'
-0.004093 Air b'-1:lemma:anaerobically'
-0.005847 OD b'lemma:~'
-0.007703 OD b'+1:lemma:-lrb-'
-0.008413 OD b'+1:lemma:~'
-0.010004 OD b'+1:lemma:and'
-0.011677 Air b'+1:lemma:-lrb-'
-0.015840 OD b'+1:postag:NNS'
-0.022634 Air b'+1:postag:-LRB-'
-0.022941 O b'lemma:m63'
-0.024873 OD b'+1:postag:CD'
-0.025582 O b'lemma:dpd'
-0.030490 Supp b'+1:postag:VBN'
-0.041555 Air b'-1:postag:CC'
-0.047125 Supp b'+1:lemma:-rrb-'
-0.048162 Phase b'-1:postag:NN'
-0.048198 Air b'-1:lemma:70'
-0.056727 O b'+1:lemma:rep1'
-0.061184 O b'-1:lemma:-lrb-'
-0.062123 O b'lemma:e.'
-0.067649 O b'-1:lemma:mid-log'
-0.079172 O b'-1:lemma:e.'
-0.079999 Med b'-1:postag:IN'
-0.081811 Air b'postag:CC'
-0.082914 Supp b'+1:postag:-RRB-'
-0.084681 OD b'postag:JJ'
-0.087207 O b'-1:lemma:,'
-0.087207 O b'-1:postag:,'
-0.091606 O b'-1:lemma:from'
-0.094097 Air b'postag:CD'
-0.094790 O b'-1:lemma:o2'
-0.098442 Gtype b'-1:postag:SYM'
-0.101371 O b'lemma:30'
-0.102952 O b'-1:lemma:30'
-0.104458 Med b'-1:postag:NN'
-0.104966 O b'-1:postag:VBN'
-0.106487 OD b'+1:postag:-LRB-'
-0.115379 O b'-1:lemma:0.1'
-0.123943 Gtype b'postag:CD'
-0.125483 O b'lemma:n2'
-0.128182 O b'+1:lemma:5'
-0.130795 Air b'-1:lemma:or'
-0.131840 O b'lemma:co2'
-0.131841 Supp b'lemma:and'
-0.133586 O b'-1:lemma:g/l'
-0.139512 Phase b'-1:lemma:at'
-0.139664 O b'+1:lemma:300'
-0.140814 Gtype b'-1:postag:CD'
-0.148051 Temp b'postag:JJ'
-0.148722 O b'-1:lemma:n2'
-0.151800 Phase b'+1:postag:NN'
-0.154097 O b'+1:lemma:shake'
-0.157668 O b'-1:lemma:rifampicin'
-0.160737 Supp b'postag:CC'
-0.163938 Technique b'-1:lemma::'
-0.192959 Med b'postag:CD'
-0.196077 Gversion b'+1:postag:NN'
-0.197347 Med b'+1:postag:IN'
-0.198353 O b'-1:lemma:the'
-0.210857 O b'+1:lemma:.'
-0.210857 O b'+1:postag:.'
-0.212158 O b'-1:postag:IN'
-0.224946 Anti b'+1:postag:JJ'
-0.229079 O b'lemma:lb'
-0.229762 O b'-1:lemma:iptg'
-0.230713 O b'-1:lemma:0.2'
-0.230962 O b'lemma:k-12'
-0.231370 O b'-1:lemma:of'
-0.233847 O b'lemma:150'
-0.233847 O b'+1:lemma:mg/ml'
-0.235755 O b'+1:lemma:\xc2\xb0c'
-0.239301 O b'+1:lemma:until'
-0.241454 O b'+1:lemma:-rrb-'
-0.291406 Med b'+1:postag:NN'
-0.300667 O b'-1:lemma:1'
-0.301872 O b'-1:postag:-LRB-'
-0.304883 Phase b'-1:postag:JJ'
-0.316741 O b'+1:lemma:arginine'
-0.323570 O b'-1:lemma:cra'
-0.324550 pH b'postag:NN'
-0.337342 O b'lemma:\xe2\x88\x86'
-0.341398 Anti b'+1:lemma:anti-fur'
-0.348116 O b'+1:postag:IN'
-0.392002 O b'+1:lemma:%'
-0.397249 O b'lemma:phase'
-0.397709 O b'lemma:anaerobic'
-0.418316 O b'+1:postag:-RRB-'
-0.425489 O b'lemma:dissolve'
-0.429358 O b'+1:lemma:0.3'
-0.434377 Supp b'-1:lemma:%'
-0.452106 Temp b'+1:lemma:to'
-0.452106 Temp b'+1:postag:TO'
-0.459401 Phase b'postag:JJ'
-0.481800 O b'+1:lemma:c'
-0.510217 O b'lemma:\xce\xb4fur'
-0.512490 O b'+1:lemma:fecl2'
-0.514242 O b'-1:lemma:od600'
-0.519690 O b'-1:lemma:ml'
-0.534845 O b'lemma:media'
-0.543546 O b'+1:postag:NNS'
-0.552477 O b'lemma:20'
-0.554174 O b'lemma:0.3'
-0.554563 O b'postag:VBP'
-0.558858 Supp b'+1:lemma:rifampicin'
-0.584166 O b'-1:lemma:rpob'
-0.595632 OD b'+1:lemma:of'
-0.601347 OD b'lemma:-lrb-'
-0.606330 O b'-1:lemma:~'
-0.609828 Air b'-1:postag:JJ'
-0.617562 O b'+1:lemma:cell'
-0.628406 O b'-1:lemma:sample'
-0.648795 O b'-1:lemma:co2'
-0.650443 Supp b'+1:lemma:acetate'
-0.661394 O b'lemma:anaerobically'
-0.661739 Technique b'-1:postag::'
-0.694556 Temp b'postag:NN'
-0.699281 O b'+1:postag:VBG'
-0.806053 O b'-1:lemma:grow'
-0.835270 OD b'postag:-LRB-'
-0.843540 O b'lemma:fecl2'
-0.844938 O b'lemma:2h'
-0.844938 O b'-1:lemma:additional'
-0.860246 O b'lemma:0.2'
-0.918603 O b'lemma:0.1'
-0.919972 OD b'+1:postag:NN'
-0.923722 O b'lemma:od600'
-0.997956 O b'lemma:37'
-1.049790 O b'+1:lemma:supplement'
-1.054918 O b'-1:lemma:dissolve'
-1.054918 O b'+1:lemma:methanol'
-1.059657 O b'lemma:of'
-1.079576 O b'+1:lemma:g/l'
-1.102935 O b'-1:postag:VBG'
-1.103027 O b'lemma:mid-log'
-1.131823 O b'-1:lemma:37'
-1.134618 O b'-1:postag::'
-1.186603 O b'-1:lemma:ompr'
-1.219384 O b'+1:lemma:hour'
-1.220567 O b'+1:lemma:+'
-1.256620 O b'+1:lemma:at'
-1.304576 O b'+1:lemma:in'
-1.348770 O b'lemma:rifampicin'
-1.369043 O b'lemma:wt'
-1.372537 Supp b'postag:JJ'
-1.416841 O b'lemma:methanol'
-1.441519 Air b'postag:NN'
-1.482367 Air b'+1:postag:JJ'
-1.497730 Anti b'postag:NNP'
-1.498466 O b'-1:lemma:nsrr'
-1.531484 O b'-1:lemma:IP'
-2.013157 O b'+1:lemma:2'
-2.053762 O b'-1:lemma:2'
-2.424183 O b'+1:lemma:1'
-3.562427 O b'-1:lemma::'
-3.910745 O b'-1:lemma:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.20645497959678813, 'c2': 0.017572644849766363}
best CV score:0.7977309817293199
model size: 0.06M
best params:{'c1': 0.036962186699730476, 'c2': 0.0007197340103941715}
best CV score:0.8049563498270011
model size: 0.08M
Flat F1: 0.784234402165812
Flat F1: 0.8014090034358301
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.800 0.842 0.821 57
Med 0.803 0.860 0.831 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.807 0.742 0.773 62
Phase 1.000 0.947 0.973 19
Air 0.920 0.742 0.821 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.866 0.792 0.828 106
Gtype 0.878 0.811 0.843 106
Substrain 0.000 0.000 0.000 1
Supp 0.818 0.662 0.732 136
Supp 0.830 0.684 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.859 0.740 0.784 480
avg / total 0.880 0.754 0.801 480
Top likely transitions:
Agit -> Agit 6.425591
OD -> OD 5.826527
Temp -> Temp 5.548786
Med -> Med 5.385181
Anti -> Anti 5.274493
Air -> Air 5.273813
Phase -> Phase 4.728944
Gtype -> Gtype 4.437920
Gversion -> Gversion 4.349816
O -> O 4.268725
Supp -> Supp 3.971396
Technique -> Technique 3.834387
pH -> pH 2.157022
O -> Supp 1.775419
Gtype -> Supp 1.744617
Substrain -> Gtype 1.701513
Air -> O 1.650192
O -> Gtype 1.270693
O -> Technique 1.253973
Technique -> Air 0.977999
O -> Anti 0.884095
O -> Temp 0.762865
Med -> O 0.608226
OD -> Phase 0.415201
Temp -> O 0.355964
Gtype -> Air 0.349440
O -> Gversion 0.343072
Gtype -> pH 0.331974
O -> Med 0.236453
Phase -> O 0.133978
Supp -> O 0.132584
O -> Strain 0.015869
O -> Phase 0.000848
O -> OD -0.004725
Technique -> OD -0.009324
Technique -> O -0.010626
Technique -> pH -0.028457
Supp -> Air -0.068848
OD -> Air -0.084459
Supp -> OD -0.119773
OD -> Med -0.182306
Gtype -> Med -0.204270
Technique -> Gtype -0.212005
Gtype -> O -0.327673
Gtype -> Anti -0.356226
O -> Air -0.606839
OD -> O -0.668006
Agit -> O -0.720674
Substrain -> O -0.778994
Supp -> Med -0.779854
Agit -> Agit 7.652221
Anti -> Anti 6.905048
OD -> OD 6.644654
Temp -> Temp 6.392371
Med -> Med 5.897259
Gtype -> Gtype 5.885016
Gversion -> Gversion 5.871628
Phase -> Phase 5.642567
Air -> Air 5.394223
O -> O 5.148014
Technique -> Technique 4.714602
Supp -> Supp 4.403242
pH -> pH 2.882239
Substrain -> Gtype 1.688067
Gtype -> Supp 1.322012
O -> Supp 1.067852
O -> Technique 0.764618
O -> Gtype 0.648760
O -> Phase 0.314348
O -> Anti 0.311802
Air -> O 0.261909
O -> Vess 0.047068
Technique -> Air 0.046094
Gtype -> pH 0.025742
O -> Gversion 0.014285
Strain -> O -0.000027
OD -> Gtype -0.000088
Med -> O -0.009150
pH -> O -0.021922
O -> Agit -0.054019
Phase -> Air -0.057034
Supp -> Gversion -0.109041
Phase -> pH -0.126867
Phase -> Supp -0.149179
Gtype -> Anti -0.177305
Gtype -> Phase -0.275685
Supp -> Temp -0.301687
O -> OD -0.348061
Air -> Phase -0.353316
Gtype -> Med -0.401859
Gtype -> O -0.403896
Supp -> OD -0.422683
OD -> Phase -0.428221
Technique -> O -0.452620
Technique -> pH -0.467777
Supp -> Phase -0.485969
Supp -> Gtype -0.488284
OD -> Temp -0.615341
Supp -> Anti -0.639507
Phase -> O -0.706192
Top unlikely transitions:
Med -> Med 5.385181
Anti -> Anti 5.274493
Air -> Air 5.273813
Phase -> Phase 4.728944
Gtype -> Gtype 4.437920
Gversion -> Gversion 4.349816
O -> O 4.268725
Supp -> Supp 3.971396
Technique -> Technique 3.834387
pH -> pH 2.157022
O -> Supp 1.775419
Gtype -> Supp 1.744617
Substrain -> Gtype 1.701513
Air -> O 1.650192
O -> Gtype 1.270693
O -> Technique 1.253973
Technique -> Air 0.977999
O -> Anti 0.884095
O -> Temp 0.762865
Med -> O 0.608226
OD -> Phase 0.415201
Temp -> O 0.355964
Gtype -> Air 0.349440
O -> Gversion 0.343072
Gtype -> pH 0.331974
O -> Med 0.236453
Phase -> O 0.133978
Supp -> O 0.132584
O -> Strain 0.015869
O -> Phase 0.000848
O -> OD -0.004725
Technique -> OD -0.009324
Technique -> O -0.010626
Technique -> pH -0.028457
Supp -> Air -0.068848
OD -> Air -0.084459
Supp -> OD -0.119773
OD -> Med -0.182306
Gtype -> Med -0.204270
Technique -> Gtype -0.212005
Gtype -> O -0.327673
Gtype -> Anti -0.356226
O -> Air -0.606839
OD -> O -0.668006
Agit -> O -0.720674
Substrain -> O -0.778994
Supp -> Med -0.779854
Gtype -> OD -1.018491
Med -> Supp -1.466475
Phase -> OD -1.648011
Gtype -> pH 0.025742
O -> Gversion 0.014285
Strain -> O -0.000027
OD -> Gtype -0.000088
Med -> O -0.009150
pH -> O -0.021922
O -> Agit -0.054019
Phase -> Air -0.057034
Supp -> Gversion -0.109041
Phase -> pH -0.126867
Phase -> Supp -0.149179
Gtype -> Anti -0.177305
Gtype -> Phase -0.275685
Supp -> Temp -0.301687
O -> OD -0.348061
Air -> Phase -0.353316
Gtype -> Med -0.401859
Gtype -> O -0.403896
Supp -> OD -0.422683
OD -> Phase -0.428221
Technique -> O -0.452620
Technique -> pH -0.467777
Supp -> Phase -0.485969
Supp -> Gtype -0.488284
OD -> Temp -0.615341
Supp -> Anti -0.639507
Phase -> O -0.706192
Anti -> OD -0.844857
Phase -> Med -0.902223
O -> Med -0.935765
OD -> Supp -0.978463
Supp -> O -1.084719
Agit -> O -1.097714
OD -> Air -1.126328
Air -> Med -1.132598
Gtype -> OD -1.139180
Supp -> Technique -1.250739
Technique -> Gtype -1.250976
Air -> OD -1.277975
O -> Air -1.291423
Air -> Supp -1.303586
Supp -> Air -1.334582
Temp -> Med -1.516161
OD -> Med -1.658158
OD -> O -1.907052
Technique -> OD -1.926078
Substrain -> O -2.266894
Med -> Supp -2.671557
Supp -> Med -2.793078
Phase -> OD -4.004033
Top positive:
7.908476 O b'lemma:_'
7.519798 Supp b'lemma:Iron'
6.893122 Air b'lemma:anaerobic'
6.757207 O b'lemma:1'
6.526738 Air b'lemma:aerobic'
6.246963 Phase b'lemma:stationary'
6.216490 Strain b'lemma:k-12'
6.159501 Technique b'lemma:ChIP-exo'
5.949001 Supp b'lemma:nitrate'
5.557355 O b'lemma:rpob'
5.556016 Phase b'lemma:mid-log'
5.526361 O b'lemma:2'
5.249738 Technique b'lemma:chipseq'
5.235064 Air b'-1:lemma:ChIP-Seq'
5.174037 O b'lemma:3'
5.050373 O b'postag:IN'
4.985897 Supp b'lemma:pq'
4.921604 Substrain b'lemma:mg1655'
4.872348 Gtype b'lemma:\xce\xb4cra'
4.847236 Gversion b'lemma:asm584v2'
4.762705 O b'-1:lemma:tag'
4.726906 OD b'lemma:od600'
4.660975 Gtype b'lemma:type'
4.628321 O b'lemma:Custom'
4.553702 O b'lemma:rep1'
4.515219 Med b'lemma:MOPS'
4.507185 Gversion b'lemma:nc'
4.464398 Air b'lemma:Aerobic'
4.453084 Med b'lemma:LB'
4.447532 Supp b'+1:lemma:\xc2\xb5m'
4.437438 O b'-1:lemma:ChIP-exo'
4.404385 O b'lemma:rep2'
4.373164 Supp b'lemma:nh4cl'
4.365179 Gtype b'lemma:flag-tag'
4.365179 Gtype b'-1:lemma:c-terminal'
4.354053 O b'postag::'
4.297412 O b'lemma:\xcf\x8332'
4.284115 Gtype b'+1:lemma:type'
4.278996 O b'lemma:b'
4.258389 Gtype b'-1:lemma:\xe2\x88\x86'
4.241615 Gtype b'lemma:wt'
4.228158 Med b'lemma:lb'
4.218565 Gtype b'lemma:arca8myc'
4.218302 Technique b'lemma:ChIP-Seq'
4.180599 Supp b'lemma:glucose'
4.160405 O b'lemma:rep3'
4.081991 O b'lemma:Cra'
3.932540 O b'lemma:a'
3.844330 Technique b'lemma:rna-seq'
3.814781 Gtype b'lemma:delta-arca'
3.626994 Gtype b'lemma:fnr8myc'
3.606800 Supp b'lemma:acetate'
3.573033 Supp b'lemma:Fe'
3.567339 Technique b'lemma:chip-seq'
3.563430 Supp b'lemma:rifampicin'
3.511453 OD b'lemma:od450'
3.511078 O b'lemma:.'
3.511078 O b'postag:.'
3.438725 Temp b'-1:lemma:sample'
3.393434 Supp b'lemma:dpd'
3.386786 Supp b'lemma:no3'
3.357689 Anti b'lemma:none'
3.339507 Med b'+1:lemma:0.4'
3.299536 Gtype b'lemma:\xe2\x88\x86'
3.288791 O b'+1:lemma:od600'
3.273758 Technique b'lemma:rnaseq'
3.258770 Gtype b'lemma:delta-fnr'
3.254592 O b'postag:VBN'
3.228840 Supp b'lemma:fructose'
3.219194 Gtype b'lemma:\xce\xb4fur'
3.208266 O b'lemma:CEL'
3.206942 Gtype b'lemma:nsrr'
3.177189 O b'-1:lemma:Aerobic'
3.129133 Technique b'-1:lemma:IP'
3.128048 O b'-1:lemma:0.3-0.35'
3.112441 O b'-1:lemma:type'
3.098709 Gversion b'-1:lemma:nc'
3.051729 Vess b'lemma:flask'
3.051729 Vess b'-1:lemma:warm'
3.008997 Supp b'+1:lemma:1'
2.987213 pH b'lemma:ph5'
2.987213 pH b'+1:lemma:.5'
2.977412 Anti b'lemma:seqa'
2.955347 Gtype b'lemma:wild-type'
2.951444 O b'lemma:-'
2.937212 O b'+1:postag:RB'
2.916028 Supp b'lemma:arginine'
2.840642 O b'-1:lemma:glucose'
2.820501 Gtype b'+1:lemma:ph5'
2.791333 Anti b'+1:lemma:antibody'
2.774879 Gversion b'lemma:chip-seq'
2.771457 Anti b'lemma:anti-myc'
2.765907 O b'lemma:chip'
2.735612 Gtype b'+1:lemma:flagtag'
2.722421 Med b'lemma:m63'
2.721104 O b'lemma:or'
2.699589 Temp b'lemma:\xc2\xb0c'
2.681423 O b'lemma:with'
2.669444 Med b'+1:lemma:minimal'
2.666834 Gversion b'lemma:u00096'
2.666834 Gversion b'+1:lemma:.2'
2.660974 Gtype b'+1:lemma:pq'
2.654887 OD b'+1:lemma:stationary'
2.644825 Gtype b'+1:lemma:with'
2.637258 Supp b'+1:lemma:2'
2.578615 Gtype b'lemma:\xce\xb4ompr'
2.569922 O b'-1:lemma:anaerobic'
2.559477 Temp b'+1:lemma:\xc2\xb0c'
2.558177 Supp b'-1:lemma:Cra'
2.555473 Gversion b'lemma:.2'
2.555473 Gversion b'-1:lemma:u00096'
2.519787 O b'postag:CC'
2.515611 Gtype b'-1:lemma:ptac'
2.474668 Technique b'-1:lemma:chip-exo'
2.465084 Gversion b'lemma:000913'
2.459269 O b'+1:lemma:pq'
2.454369 Strain b'+1:lemma:substr'
2.453079 O b'postag:DT'
2.447446 Temp b'-1:lemma:\xcf\x8332'
2.434523 Technique b'+1:lemma:chip-exo'
2.415981 Supp b'lemma:nacl'
2.400381 O b'+1:postag:NNP'
2.395375 O b'lemma:s'
2.378114 pH b'lemma:.5'
2.378114 pH b'-1:lemma:ph5'
2.360956 Med b'+1:lemma:2.0'
2.360197 Temp b'-1:lemma:43'
2.354343 O b'-1:lemma:lb'
2.333302 Gtype b'-1:lemma:rpob'
2.331044 Supp b'+1:lemma:_'
2.265756 O b'-1:lemma:l1'
2.256561 Supp b'-1:lemma:\xc2\xb5m'
2.253390 Air b'-1:lemma:-'
2.244110 O b'lemma:oxyr'
2.231965 Air b'lemma:anaerobically'
2.211436 Anti b'lemma:anti-rpos'
2.204750 O b'-1:lemma:stpa'
2.194353 OD b'-1:lemma:~'
2.189113 Gtype b'lemma:\xce\xb4soxs'
2.183419 Air b'postag:RB'
2.170778 Supp b'-1:lemma:+'
2.151725 Temp b'lemma:43'
2.127054 Temp b'lemma:37'
2.124907 Supp b'lemma:20'
2.115142 O b'+1:lemma:o.d.'
2.111143 Supp b'lemma:Leu'
2.107663 O b'lemma:Lrp'
2.107472 Temp b'-1:lemma:37'
2.094728 Gtype b'lemma:ptac'
2.073944 O b'+1:lemma:chip-seq'
2.062388 Supp b'lemma:iptg'
2.042062 O b'lemma:affyexp'
2.040790 Med b'lemma:media'
2.031837 O b'lemma:culture'
2.024586 O b'postag:VBG'
2.010374 Vess b'-1:postag:VBN'
2.009201 Gtype b'lemma:pk4854'
2.002974 Med b'lemma:glucose'
1.998019 Gtype b'+1:lemma:_'
1.980119 Supp b'+1:lemma:hour'
1.975173 O b'lemma:chip-arca'
1.959423 Supp b'-1:lemma:with'
1.922869 Technique b'-1:lemma:input'
1.921526 O b'lemma:ompr'
1.910950 Med b'lemma:broth'
1.910950 Med b'-1:lemma:L'
1.910014 Gtype b'lemma:deltaseqa'
1.910014 Gtype b'-1:lemma:old'
1.905010 O b'-1:lemma:0.3'
1.901042 OD b'lemma:0.3'
1.900964 Med b'lemma:L'
1.900964 Med b'+1:lemma:broth'
1.899018 Supp b'+1:lemma:Deficient'
1.893912 Air b'lemma:Anaerobic'
1.893451 Med b'-1:lemma:ml'
1.870173 O b'lemma:Fur'
1.848155 pH b'+1:postag:CD'
1.823256 O b'+1:lemma:coli'
1.818674 Gtype b'-1:lemma:nsrr'
1.808290 Substrain b'+1:lemma:phtpg'
1.805456 Phase b'-1:lemma:mid-log'
1.797810 Med b'-1:lemma:glucose'
1.796653 Supp b'lemma:methanol'
1.792416 O b'-1:lemma:\xc2\xb0c'
1.781537 Supp b'lemma:Adenine'
1.779649 Air b'-1:lemma:grow'
1.777565 Technique b'+1:lemma:rna-seq'
1.776039 OD b'lemma:phase'
1.775438 O b'lemma:condition'
1.763711 Air b'-1:lemma:phase'
1.762988 Gversion b'lemma:_'
1.759448 O b'-1:lemma:dpd'
1.736984 O b'lemma:genotype/variation'
1.716841 O b'lemma:argr'
1.709815 O b'postag:VBD'
1.687639 Air b'-1:lemma:co2'
1.686138 Gversion b'postag:CD'
1.676377 Phase b'-1:lemma:until'
1.672693 Gtype b'lemma:WT'
1.671406 Phase b'+1:lemma:for'
14.736732 Supp b'lemma:Iron'
14.465018 Phase b'lemma:stationary'
11.931234 Air b'lemma:anaerobic'
11.755072 O b'lemma:_'
11.500878 Air b'lemma:aerobic'
10.776302 O b'lemma:Custom'
9.977404 Med b'lemma:MOPS'
9.507368 O b'lemma:1'
9.383805 O b'lemma:rpob'
9.319544 Technique b'lemma:ChIP-exo'
9.016782 Supp b'lemma:nitrate'
8.629834 OD b'+1:lemma:stationary'
8.582738 Technique b'lemma:chipseq'
8.331021 Strain b'lemma:k-12'
8.185729 Supp b'lemma:pq'
8.108336 Air b'lemma:Aerobic'
8.081666 O b'-1:lemma:tag'
7.987196 Gtype b'lemma:flag-tag'
7.987196 Gtype b'-1:lemma:c-terminal'
7.969290 O b'lemma:\xcf\x8332'
7.864454 Air b'-1:lemma:ChIP-Seq'
7.779218 Phase b'lemma:mid-log'
7.699581 Technique b'lemma:ChIP-Seq'
7.693879 Gtype b'lemma:\xce\xb4cra'
7.488490 O b'lemma:2'
7.378100 Gversion b'lemma:asm584v2'
7.205543 O b'lemma:3'
7.115380 O b'lemma:b'
7.043756 Med b'lemma:LB'
6.950209 O b'lemma:for'
6.905886 O b'lemma:rep1'
6.892700 O b'lemma:rep2'
6.829683 O b'-1:lemma:ChIP-exo'
6.826037 Gtype b'lemma:arca8myc'
6.814538 OD b'lemma:od450'
6.663495 O b'postag::'
6.587073 Supp b'-1:lemma:Cra'
6.555197 Supp b'+1:lemma:\xc2\xb5m'
6.542596 Gtype b'lemma:delta-arca'
6.493295 O b'lemma:rep3'
6.402654 Gtype b'lemma:fnr8myc'
6.392757 Gtype b'lemma:type'
6.351940 O b'-1:lemma:0.3-0.35'
6.347501 Supp b'lemma:Fe'
6.273476 O b'lemma:Cra'
6.182315 Gtype b'lemma:delta-fnr'
6.177522 Substrain b'lemma:mg1655'
6.170615 Air b'lemma:Anaerobic'
6.113701 O b'lemma:with'
5.936854 O b'-1:lemma:Aerobic'
5.932249 Technique b'lemma:rnaseq'
5.914672 O b'lemma:a'
5.800356 Gtype b'-1:lemma:\xe2\x88\x86'
5.783221 O b'lemma:chip'
5.753480 Technique b'lemma:rna-seq'
5.693444 Supp b'lemma:rifampicin'
5.670336 Gtype b'lemma:\xce\xb4fur'
5.653053 Supp b'lemma:nh4cl'
5.619758 Gtype b'lemma:nsrr'
5.548861 Gversion b'lemma:nc'
5.511691 O b'-1:lemma:anaerobic'
5.500216 Supp b'lemma:no3'
5.430117 Anti b'lemma:none'
5.416869 Gtype b'lemma:wt'
5.398199 O b'+1:lemma:chip-seq'
5.372251 Strain b'+1:lemma:substr'
5.367205 Supp b'lemma:glucose'
5.288350 Supp b'lemma:arginine'
5.224904 O b'+1:lemma:sparging'
5.195289 Gtype b'-1:lemma:rpob'
5.120201 O b'+1:lemma:od600'
5.119304 Anti b'lemma:seqa'
5.065756 O b'lemma:.'
5.065756 O b'postag:.'
4.958683 O b'+1:postag:RB'
4.957995 Supp b'-1:lemma:+'
4.942087 Anti b'lemma:anti-rpos'
4.940685 O b'-1:lemma:type'
4.936711 Temp b'-1:lemma:\xcf\x8332'
4.912250 Gtype b'+1:lemma:ph5'
4.895200 Med b'lemma:lb'
4.815819 Gtype b'-1:lemma:ptac'
4.811978 O b'lemma:2-3'
4.810818 O b'-1:lemma:glucose'
4.792895 Supp b'lemma:Leu'
4.733669 O b'-1:lemma:0.3'
4.703956 Supp b'+1:lemma:hour'
4.701672 Anti b'lemma:anti-myc'
4.688605 Gtype b'+1:lemma:type'
4.685195 Technique b'+1:lemma:chip-exo'
4.663539 Gtype b'lemma:\xce\xb4ompr'
4.630196 O b'lemma:at'
4.627640 OD b'lemma:od600'
4.627504 Gversion b'-1:lemma:nc'
4.614675 O b'lemma:ompr'
4.580496 O b'lemma:oxyr'
4.534418 Gtype b'lemma:WT'
4.489105 Air b'lemma:anerobically'
4.453615 Med b'+1:lemma:0.4'
4.449035 Vess b'lemma:flask'
4.449035 Vess b'-1:lemma:warm'
4.421452 Technique b'lemma:chip-seq'
4.387313 Gtype b'lemma:pk4854'
4.372903 Technique b'-1:lemma:input'
4.333388 Supp b'+1:lemma:1'
4.325171 pH b'lemma:ph5'
4.325171 pH b'+1:lemma:.5'
4.293581 O b'-1:lemma:dpd'
4.280002 Air b'lemma:anaerobically'
4.273687 Supp b'lemma:Adenine'
4.255972 Temp b'-1:lemma:37'
4.227681 Supp b'lemma:acetate'
4.213628 O b'lemma:chip-arca'
4.212847 Technique b'-1:lemma:IP'
4.207389 Med b'+1:lemma:contain'
4.195958 O b'lemma:s'
4.194941 Supp b'lemma:fructose'
4.188294 O b'postag:IN'
4.148814 O b'postag:VBN'
4.113823 O b'lemma:CEL'
4.077959 O b'lemma:argr'
4.042281 Supp b'lemma:dpd'
3.997796 Gversion b'lemma:chip-seq'
3.996937 Med b'-1:lemma:complete'
3.979910 O b'lemma:or'
3.977533 Supp b'lemma:iptg'
3.966804 Gtype b'+1:lemma:pq'
3.958145 Gtype b'lemma:\xe2\x88\x86'
3.955065 Med b'+1:lemma:2.0'
3.950822 Gtype b'lemma:wild-type'
3.949211 O b'lemma:soxs'
3.949211 O b'lemma:soxr'
3.941119 Med b'lemma:m63'
3.931242 Substrain b'+1:lemma:phtpg'
3.927386 O b'+1:lemma:o.d.'
3.916508 Gtype b'lemma:deltaseqa'
3.916508 Gtype b'-1:lemma:old'
3.914220 Gtype b'lemma:\xce\xb4soxs'
3.907586 O b'lemma:purr'
3.892156 Gtype b'-1:lemma:phtpg'
3.890329 Gtype b'lemma:ptac'
3.850631 Gversion b'lemma:000913'
3.838063 O b'+1:lemma:pq'
3.814358 Med b'-1:lemma:ml'
3.787653 Gtype b'lemma:dfnr'
3.771572 Temp b'-1:lemma:sample'
3.744540 Supp b'+1:lemma:2'
3.742952 Supp b'+1:lemma:and'
3.728733 Gversion b'lemma:u00096'
3.728733 Gversion b'+1:lemma:.2'
3.711200 O b'-1:lemma:lb'
3.705509 O b'lemma:-'
3.691676 Gtype b'+1:lemma:flagtag'
3.674793 Gversion b'lemma:.2'
3.674793 Gversion b'-1:lemma:u00096'
3.653013 Supp b'lemma:nacl'
3.643673 Phase b'lemma:exponentially'
3.585772 Technique b'+1:lemma:rna-seq'
3.575806 O b'postag:DT'
3.570513 OD b'-1:lemma:about'
3.563376 Phase b'+1:lemma:for'
3.528626 O b'-1:lemma:\xc2\xb0c'
3.519471 Supp b'-1:lemma:\xc2\xb5m'
3.512500 Temp b'lemma:\xc2\xb0c'
3.492555 Med b'lemma:L'
3.492555 Med b'+1:lemma:broth'
3.475007 Phase b'-1:lemma:until'
3.468148 Anti b'+1:lemma:antibody'
3.443352 Gtype b'+1:lemma:knock-out'
3.428406 O b'lemma:pt7'
3.424672 O b'lemma:delta'
3.402918 Temp b'-1:lemma:43'
3.373540 OD b'lemma:0.3'
3.365163 O b'+1:postag:VBP'
3.352185 Gtype b'lemma:\xce\xb4soxr'
3.346484 O b'-1:lemma:min'
3.328874 O b'lemma:affyexp'
3.326810 Gtype b'-1:lemma:ptrc'
3.318952 Med b'-1:lemma:LB'
3.316906 Gtype b'lemma:\xce\xb4oxyr'
3.293421 O b'lemma:Fur'
3.287509 Gtype b'lemma:soxs-8myc'
3.287509 Gtype b'lemma:soxr-8myc'
3.284962 O b'-1:lemma:one'
3.281320 Supp b'+1:lemma:_'
3.258770 OD b'lemma:0.35'
3.241590 Med b'+1:lemma:minimal'
3.241148 Temp b'lemma:37'
3.196351 O b'+1:postag:NNP'
3.162352 Supp b'lemma:leucine'
3.132572 Supp b'lemma:methanol'
3.118836 Supp b'+1:lemma:iptg'
3.117955 O b'lemma:Lrp'
3.114567 O b'-1:lemma:l1'
3.104623 Technique b'-1:lemma:chip-exo'
3.095609 Temp b'lemma:43'
3.070949 Gtype b'lemma:purr-8myc'
3.038562 O b'lemma:chip-fnr'
3.038302 Temp b'-1:lemma:degree'
2.983839 O b'+1:lemma:0.2'
Top negative:
0.015104 Vess b'+1:postag:IN'
0.014949 OD b'-1:lemma:to'
0.014949 OD b'-1:postag:TO'
0.013481 O b'+1:lemma:nitrate'
0.012911 O b'-1:lemma:mm'
0.012853 O b'-1:lemma:m63'
0.012845 Phase b'+1:lemma:aerobically'
0.012531 Phase b'+1:postag:RB'
0.010531 OD b'+1:lemma:coli'
0.010197 Air b'postag:-LRB-'
0.007967 O b'+1:lemma:mm'
0.007668 Air b'-1:postag:-LRB-'
0.007530 O b'+1:lemma:wt'
0.007412 O b'+1:lemma:for'
0.006443 Med b'-1:lemma:g/l'
0.005977 Temp b'-1:postag:NN'
0.005028 OD b'-1:lemma:growth'
0.004138 Technique b'-1:postag:NN'
0.003008 O b'lemma:fresh'
0.002709 O b'+1:postag:SYM'
0.002549 Supp b'+1:lemma:deficient'
0.002275 Technique b'+1:postag:-RRB-'
0.002219 O b'+1:lemma:_'
0.001749 O b'lemma:dpd'
0.001500 Temp b'postag:VB'
0.001375 Gtype b'lemma:cra-8myc-tagged'
0.001375 Gtype b'lemma:fur-8myc'
0.000712 O b'-1:postag:VBZ'
0.000676 O b'+1:lemma:minute'
0.000589 Temp b'+1:postag:NNS'
0.000468 Supp b'lemma:um'
0.000451 Gtype b'lemma:Combined'
0.000451 Gtype b'+1:lemma:input'
0.000346 O b'postag:VBZ'
0.000331 Supp b'-1:lemma:250'
0.000251 O b'lemma:-80'
0.000219 Temp b'-1:postag:NNS'
0.000204 O b'+1:lemma:total'
0.000185 Air b'+1:postag::'
0.000154 O b'-1:lemma:to'
0.000154 O b'-1:postag:TO'
0.000148 Gversion b'-1:postag::'
0.000078 O b'+1:lemma:dpd'
0.000049 Gtype b'lemma:inducible'
0.000049 Gtype b'-1:lemma:carrying'
0.000049 Gtype b'+1:lemma:ptrc'
0.000030 OD b'+1:lemma:0.35'
0.000027 Anti b'+1:lemma:tag'
0.000010 OD b'lemma:mg1655'
0.000009 OD b'-1:lemma:k-12'
-0.000003 Gtype b'+1:postag:NNS'
-0.000145 O b'lemma:m63'
-0.000217 O b'-1:lemma:um'
-0.000217 O b'+1:lemma:paraquat'
-0.000321 Temp b'-1:lemma:\xc2\xb0c'
-0.000324 Agit b'postag:NN'
-0.000658 Gtype b'+1:lemma:\xe2\x88\x86'
-0.000729 Air b'-1:lemma:,'
-0.000729 Air b'-1:postag:,'
-0.001373 Gtype b'postag:CD'
-0.001602 Supp b'+1:lemma:-rrb-'
-0.001692 Supp b'+1:postag:-RRB-'
-0.002077 O b'lemma:lb'
-0.002511 O b'-1:lemma:,'
-0.002511 O b'-1:postag:,'
-0.003565 OD b'+1:postag:-LRB-'
-0.004827 O b'-1:lemma:g/l'
-0.007036 Air b'+1:lemma:25'
-0.007105 O b'+1:lemma:rep1'
-0.007327 Supp b'lemma:mm'
-0.008864 O b'+1:lemma:c'
-0.009788 Air b'-1:lemma:aerobically'
-0.011509 O b'-1:postag:VBN'
-0.011813 O b'+1:lemma:shake'
-0.014323 Air b'lemma:25'
-0.017276 Air b'+1:lemma:-lrb-'
-0.017627 O b'+1:lemma:aerobically'
-0.018161 O b'lemma:e.'
-0.020084 Med b'-1:postag:CD'
-0.021369 O b'lemma:glucose'
-0.023787 Gtype b'-1:postag:NN'
-0.034266 OD b'postag:JJ'
-0.035836 Med b'postag:CD'
-0.043749 O b'-1:lemma:o2'
-0.049597 Gtype b'-1:postag:DT'
-0.050879 O b'+1:lemma:300'
-0.051292 Phase b'-1:postag:JJ'
-0.052811 Phase b'-1:postag:NN'
-0.057812 O b'-1:lemma:rifampicin'
-0.064533 O b'-1:lemma:e.'
-0.067797 O b'+1:lemma:until'
-0.076803 O b'lemma:150'
-0.076803 O b'+1:lemma:mg/ml'
-0.080714 O b'+1:lemma:5'
-0.090840 Gversion b'+1:postag:NN'
-0.099773 OD b'+1:postag:CD'
-0.103778 O b'-1:lemma:-lrb-'
-0.104888 Anti b'+1:postag:JJ'
-0.112142 Technique b'-1:lemma::'
-0.119753 Air b'postag:CC'
-0.127293 O b'-1:lemma:0.1'
-0.127394 O b'+1:lemma:.'
-0.127394 O b'+1:postag:.'
-0.129048 Air b'-1:lemma:or'
-0.129819 O b'-1:lemma:from'
-0.138472 O b'-1:postag:IN'
-0.146711 Air b'-1:postag:CC'
-0.147481 O b'+1:lemma:-rrb-'
-0.155126 O b'+1:lemma:antibody'
-0.155172 O b'lemma:co2'
-0.168963 Gtype b'-1:postag:CD'
-0.169956 O b'+1:postag:NNS'
-0.174119 Supp b'postag:CC'
-0.179294 O b'-1:lemma:1'
-0.191426 O b'+1:lemma:arginine'
-0.196031 O b'-1:lemma:cra'
-0.199976 O b'lemma:anaerobic'
-0.204578 O b'lemma:30'
-0.224096 Med b'-1:postag:NN'
-0.230003 Phase b'+1:postag:NN'
-0.236956 O b'+1:lemma:%'
-0.241481 O b'-1:lemma:30'
-0.264234 Air b'postag:CD'
-0.270046 O b'lemma:\xce\xb4fur'
-0.280726 O b'-1:lemma:ml'
-0.288044 O b'-1:lemma:of'
-0.297076 Med b'+1:postag:NN'
-0.299805 Med b'+1:postag:IN'
-0.302610 Supp b'+1:lemma:rifampicin'
-0.306596 O b'-1:lemma:~'
-0.307778 O b'-1:postag:-LRB-'
-0.310654 O b'lemma:phase'
-0.311969 pH b'postag:NN'
-0.315543 O b'+1:lemma:0.3'
-0.318646 O b'postag:VBP'
-0.335513 OD b'+1:postag:NN'
-0.365484 Temp b'postag:JJ'
-0.402954 O b'lemma:dissolve'
-0.424513 O b'lemma:20'
-0.429534 O b'+1:postag:IN'
-0.437134 O b'-1:lemma:grow'
-0.457631 Phase b'-1:lemma:at'
-0.461721 Temp b'+1:lemma:to'
-0.461721 Temp b'+1:postag:TO'
-0.486817 Supp b'-1:lemma:%'
-0.495015 O b'lemma:0.3'
-0.505567 Temp b'postag:NN'
-0.513730 O b'lemma:od600'
-0.526067 O b'+1:postag:-RRB-'
-0.537886 O b'+1:postag:VBG'
-0.541924 O b'-1:lemma:od600'
-0.549617 O b'-1:lemma:rpob'
-0.561323 O b'-1:lemma:0.2'
-0.568252 OD b'lemma:-lrb-'
-0.568961 Technique b'-1:postag::'
-0.587228 O b'-1:lemma:sample'
-0.604535 O b'+1:lemma:fecl2'
-0.605395 O b'-1:lemma:37'
-0.633419 O b'lemma:anaerobically'
-0.640315 Air b'-1:postag:JJ'
-0.646518 O b'lemma:\xe2\x88\x86'
-0.700705 O b'lemma:fecl2'
-0.713765 O b'-1:postag::'
-0.750660 O b'lemma:media'
-0.798765 O b'+1:lemma:supplement'
-0.840866 O b'-1:postag:VBG'
-0.867716 O b'lemma:0.2'
-0.905677 O b'+1:lemma:cell'
-0.915154 O b'lemma:2h'
-0.915154 O b'-1:lemma:additional'
-0.930586 Supp b'+1:lemma:acetate'
-0.930611 O b'lemma:37'
-0.940854 O b'+1:lemma:g/l'
-0.942447 O b'-1:lemma:co2'
-0.944499 O b'lemma:of'
-0.951108 O b'-1:lemma:dissolve'
-0.951108 O b'+1:lemma:methanol'
-0.962496 O b'+1:lemma:hour'
-0.976720 Phase b'postag:JJ'
-0.983487 O b'lemma:0.1'
-1.035888 O b'-1:lemma:ompr'
-1.064088 O b'+1:lemma:at'
-1.115638 OD b'postag:-LRB-'
-1.121251 O b'lemma:wt'
-1.195033 O b'lemma:mid-log'
-1.218852 O b'+1:lemma:+'
-1.237063 O b'-1:lemma:IP'
-1.311143 O b'-1:lemma:nsrr'
-1.325930 Anti b'postag:NNP'
-1.428005 O b'lemma:rifampicin'
-1.465722 Air b'+1:postag:JJ'
-1.474845 Supp b'postag:JJ'
-1.503128 O b'lemma:methanol'
-1.517666 O b'+1:lemma:in'
-1.685015 Air b'postag:NN'
-2.153686 O b'+1:lemma:2'
-2.261742 O b'-1:lemma:2'
-2.412156 O b'+1:lemma:1'
-4.073767 O b'-1:lemma::'
-4.265465 O b'-1:lemma:_'
-0.001880 O b'-1:lemma:20'
-0.002666 O b'lemma:k-12'
-0.002968 O b'+1:lemma:min'
-0.003084 Med b'lemma:-lrb-'
-0.003121 Med b'postag:-LRB-'
-0.004653 O b'-1:lemma:iptg'
-0.004849 O b'-1:lemma:at'
-0.005085 O b'+1:postag:CD'
-0.007587 O b'-1:lemma:cra'
-0.010544 O b'+1:lemma:95'
-0.011683 O b'lemma:m63'
-0.012501 O b'lemma:medium'
-0.012898 OD b'-1:postag:DT'
-0.013161 O b'+1:lemma:25'
-0.013797 Gtype b'postag::'
-0.013997 Agit b'-1:postag:NN'
-0.014419 Anti b'+1:postag:JJ'
-0.015431 Supp b'-1:postag:DT'
-0.019000 O b'-1:lemma:30'
-0.019225 O b'+1:lemma:shake'
-0.020830 OD b'-1:lemma:a'
-0.025221 Air b'-1:postag:NNP'
-0.025592 Anti b'postag:NN'
-0.028086 Gtype b'-1:lemma:,'
-0.028086 Gtype b'-1:postag:,'
-0.031137 Gtype b'-1:postag:JJ'
-0.040614 O b'-1:lemma:mm'
-0.041284 O b'+1:lemma:-rrb-'
-0.042740 O b'lemma:cell'
-0.043305 Air b'-1:postag:CC'
-0.043495 O b'+1:lemma:300'
-0.051111 Med b'-1:postag:NN'
-0.055942 Phase b'+1:postag:NN'
-0.059007 O b'-1:lemma:-lrb-'
-0.059506 O b'-1:lemma:until'
-0.060593 O b'lemma:purify'
-0.062294 Med b'-1:lemma:m63'
-0.063502 Med b'+1:postag:CC'
-0.064443 Med b'+1:postag:NNS'
-0.065194 O b'lemma:30'
-0.067235 O b'+1:lemma:antibody'
-0.068873 O b'+1:lemma:arginine'
-0.074074 Anti b'+1:lemma:anti-fur'
-0.074512 Supp b'-1:lemma:the'
-0.075699 Agit b'postag:NN'
-0.076342 OD b'postag:JJ'
-0.081383 O b'lemma:mg/ml'
-0.081383 O b'-1:lemma:150'
-0.083167 O b'+1:lemma:mm'
-0.084553 OD b'+1:postag:CD'
-0.088239 O b'+1:lemma:5'
-0.092963 O b'lemma:o2'
-0.102549 O b'+1:lemma:0.4'
-0.103355 Air b'-1:lemma:95'
-0.106456 Supp b'-1:postag:NNP'
-0.108567 O b'-1:lemma:of'
-0.115119 Gversion b'-1:postag:NN'
-0.120133 O b'lemma:aerobically'
-0.120470 Gtype b'-1:postag:NN'
-0.120546 O b'+1:lemma:or'
-0.120740 O b'+1:lemma:culture'
-0.127755 Supp b'-1:postag:NN'
-0.129556 Supp b'-1:lemma:-'
-0.133917 O b'-1:postag:-LRB-'
-0.134138 Supp b'-1:postag:VBG'
-0.138473 O b'-1:lemma:fresh'
-0.140719 O b'-1:postag:IN'
-0.142122 O b'lemma:mg1655'
-0.143719 OD b'+1:lemma:0.4'
-0.143799 O b'lemma:grow'
-0.148543 O b'-1:lemma:with'
-0.150394 Air b'-1:lemma:or'
-0.152699 Air b'postag:CD'
-0.159127 O b'-1:lemma:o2'
-0.164529 Anti b'-1:postag:NN'
-0.167167 Supp b'+1:postag:IN'
-0.171276 Technique b'-1:postag::'
-0.171821 O b'-1:lemma:n2'
-0.176160 Gtype b'+1:lemma:-'
-0.194927 O b'-1:lemma:IP'
-0.195160 O b'lemma:n2'
-0.198789 Phase b'lemma:pahse'
-0.201995 O b'lemma:e.'
-0.205638 Supp b'lemma:and'
-0.207287 O b'-1:lemma:from'
-0.208015 O b'lemma:minimal'
-0.210261 Technique b'-1:lemma::'
-0.212191 Med b'+1:postag:IN'
-0.217993 O b'lemma:co2'
-0.228390 O b'-1:lemma:e.'
-0.232055 O b'-1:lemma:delta'
-0.235967 O b'lemma:anaerobic'
-0.240188 Gtype b'+1:lemma:\xe2\x88\x86'
-0.252858 Air b'+1:postag:NN'
-0.253575 O b'lemma:\xce\xb4fur'
-0.255267 O b'+1:lemma:until'
-0.278004 OD b'+1:lemma:and'
-0.279260 Strain b'postag:NN'
-0.290950 Phase b'+1:lemma:pahse'
-0.303132 O b'+1:postag:-RRB-'
-0.303655 O b'-1:lemma:0.1'
-0.306332 O b'lemma:lb'
-0.321340 Strain b'+1:postag:NN'
-0.322047 O b'-1:lemma:um'
-0.322047 O b'+1:lemma:paraquat'
-0.322249 O b'-1:postag:VBN'
-0.349326 O b'lemma:\xc2\xb0c'
-0.361160 O b'-1:lemma:od600'
-0.367243 OD b'+1:postag:CC'
-0.370391 O b'+1:postag:IN'
-0.371202 O b'+1:lemma:cell'
-0.376309 Gtype b'postag:CD'
-0.379638 O b'lemma:glucose'
-0.391908 Med b'postag:CD'
-0.423766 Phase b'-1:lemma:at'
-0.429012 O b'-1:lemma:rifampicin'
-0.467242 O b'lemma:phase'
-0.467472 O b'+1:lemma:phase'
-0.475017 O b'postag:RB'
-0.477051 Temp b'postag:NN'
-0.488107 O b'+1:lemma:.'
-0.488107 O b'+1:postag:.'
-0.490917 pH b'postag:NN'
-0.497406 Supp b'+1:lemma:rifampicin'
-0.508914 OD b'+1:postag:NN'
-0.512657 O b'+1:lemma:minimal'
-0.519173 O b'-1:lemma:0.2'
-0.530979 O b'lemma:od600'
-0.533526 O b'-1:lemma:ml'
-0.543008 O b'-1:lemma:grow'
-0.578806 O b'+1:lemma:\xc2\xb0c'
-0.598896 O b'+1:lemma:%'
-0.630328 Anti b'postag:NNP'
-0.634341 O b'+1:postag:NNS'
-0.638897 O b'lemma:anaerobically'
-0.646464 Med b'+1:postag:NN'
-0.654278 O b'lemma:dissolve'
-0.657625 O b'+1:lemma:0.3'
-0.663655 O b'-1:lemma:~'
-0.667007 O b'+1:lemma:c'
-0.671527 OD b'lemma:-lrb-'
-0.695001 Supp b'+1:lemma:acetate'
-0.719232 Supp b'+1:postag:VBN'
-0.736651 OD b'postag:-LRB-'
-0.748690 O b'lemma:150'
-0.748690 O b'+1:lemma:mg/ml'
-0.748744 O b'-1:lemma:mid-log'
-0.757228 O b'lemma:of'
-0.765669 O b'lemma:0.3'
-0.775445 Phase b'-1:postag:NN'
-0.785838 O b'+1:lemma:_'
-0.836798 O b'+1:lemma:+'
-0.838706 O b'lemma:media'
-0.850667 Temp b'+1:lemma:to'
-0.850667 Temp b'+1:postag:TO'
-0.853884 O b'lemma:20'
-0.858396 O b'+1:lemma:fecl2'
-0.888463 O b'-1:lemma:37'
-0.889531 O b'+1:postag:VBG'
-0.894578 Supp b'postag:CC'
-0.921012 O b'-1:lemma:sample'
-0.924636 O b'-1:lemma:rpob'
-0.961486 O b'-1:lemma:dissolve'
-0.961486 O b'+1:lemma:methanol'
-0.968540 O b'+1:lemma:g/l'
-0.990992 O b'-1:lemma:co2'
-1.021480 Air b'postag:NN'
-1.067624 O b'postag:VBP'
-1.081123 O b'lemma:37'
-1.089911 O b'lemma:0.2'
-1.170615 O b'-1:postag:VBG'
-1.208578 Med b'-1:postag:IN'
-1.244210 O b'lemma:dpd'
-1.275258 Gversion b'+1:postag:NN'
-1.294393 O b'+1:lemma:in'
-1.403685 O b'-1:postag::'
-1.414702 O b'-1:lemma:nsrr'
-1.415899 O b'+1:lemma:supplement'
-1.418323 O b'lemma:fecl2'
-1.446252 O b'lemma:2h'
-1.446252 O b'-1:lemma:additional'
-1.614291 Air b'-1:postag:JJ'
-1.668024 Phase b'-1:postag:JJ'
-1.735170 O b'+1:lemma:at'
-1.739701 Air b'+1:postag:JJ'
-1.761325 O b'lemma:0.1'
-1.911105 O b'lemma:wt'
-1.984681 O b'-1:lemma:ompr'
-1.985595 O b'lemma:mid-log'
-2.042857 Supp b'postag:JJ'
-2.130120 Supp b'-1:lemma:%'
-2.172496 O b'+1:lemma:hour'
-2.277278 O b'lemma:rifampicin'
-2.459658 O b'-1:lemma:2'
-2.504857 O b'lemma:methanol'
-2.599172 O b'+1:lemma:2'
-3.335267 O b'+1:lemma:1'
-4.632191 O b'-1:lemma:_'
-4.728214 Phase b'postag:JJ'
-5.510009 O b'-1:lemma::'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.12822074735920433, 'c2': 0.028255623123597452}
best CV score:0.8237380408677073
model size: 0.08M
Flat F1: 0.8193415910917898
precision recall f1-score support
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 1.000 0.909 0.952 22
Med 0.898 0.930 0.914 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.810 0.758 0.783 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.927 0.840 0.881 106
Substrain 0.000 0.000 0.000 1
Supp 0.883 0.669 0.762 136
Gversion 0.000 0.000 0.000 0
avg / total 0.889 0.771 0.819 480
Top likely transitions:
Agit -> Agit 6.565409
OD -> OD 6.231734
Temp -> Temp 5.402921
Med -> Med 5.359382
Anti -> Anti 5.104770
O -> O 4.742896
Air -> Air 4.719911
Supp -> Supp 4.287498
Phase -> Phase 4.241142
Gtype -> Gtype 4.089050
Gversion -> Gversion 4.032429
Technique -> Technique 3.850995
pH -> pH 1.963947
O -> Supp 1.603550
Air -> O 1.398467
O -> Technique 1.240044
Substrain -> Gtype 1.119453
O -> Gtype 0.875238
Gtype -> Supp 0.858295
O -> Temp 0.596269
Phase -> O 0.564175
O -> Anti 0.517085
Med -> O 0.386943
Supp -> O 0.353705
O -> Gversion 0.348096
Temp -> O 0.185839
OD -> Phase 0.161408
Technique -> Air 0.128857
O -> pH 0.118475
O -> Strain 0.096954
O -> Med 0.052178
Anti -> O 0.009171
O -> Phase 0.000467
O -> OD -0.005897
Phase -> Technique -0.012764
Supp -> Temp -0.013683
Technique -> Gtype -0.021909
Supp -> OD -0.033848
Phase -> Air -0.069264
Supp -> Air -0.090838
Gtype -> Technique -0.113048
Gtype -> Gversion -0.157086
Gtype -> Phase -0.202957
Technique -> pH -0.208178
Gtype -> O -0.210311
OD -> Gtype -0.231184
Air -> Supp -0.257429
Technique -> OD -0.285302
Technique -> O -0.341935
Supp -> Gversion -0.342115
Top unlikely transitions:
Air -> O 1.398467
O -> Technique 1.240044
Substrain -> Gtype 1.119453
O -> Gtype 0.875238
Gtype -> Supp 0.858295
O -> Temp 0.596269
Phase -> O 0.564175
O -> Anti 0.517085
Med -> O 0.386943
Supp -> O 0.353705
O -> Gversion 0.348096
Temp -> O 0.185839
OD -> Phase 0.161408
Technique -> Air 0.128857
O -> pH 0.118475
O -> Strain 0.096954
O -> Med 0.052178
Anti -> O 0.009171
O -> Phase 0.000467
O -> OD -0.005897
Phase -> Technique -0.012764
Supp -> Temp -0.013683
Technique -> Gtype -0.021909
Supp -> OD -0.033848
Phase -> Air -0.069264
Supp -> Air -0.090838
Gtype -> Technique -0.113048
Gtype -> Gversion -0.157086
Gtype -> Phase -0.202957
Technique -> pH -0.208178
Gtype -> O -0.210311
OD -> Gtype -0.231184
Air -> Supp -0.257429
Technique -> OD -0.285302
Technique -> O -0.341935
Supp -> Gversion -0.342115
Gtype -> Med -0.344684
Supp -> Gtype -0.358479
Air -> Temp -0.449831
OD -> O -0.500326
Gtype -> Anti -0.517041
Agit -> O -0.543034
O -> Air -0.641599
Phase -> OD -0.787199
OD -> Air -0.831209
Supp -> Technique -0.892537
Supp -> Med -0.914717
Gtype -> OD -0.923871
Substrain -> O -0.971193
Med -> Supp -1.319670
Top positive:
6.042889 O b'lemma:1'
5.378037 O b'lemma:2'
4.814602 O b'word[:2]:re'
4.742997 O b'lemma:3'
4.604194 Air b'word[:2]:Ae'
4.582747 O b'-1:lemma:tag'
4.358279 Technique b'word[:2]:Ch'
4.152239 Air b'lemma:anaerobic'
4.066499 O b'lemma:a'
4.065258 O b'lemma:_'
4.065258 O b'word[:1]:_'
4.064588 O b'postag:IN'
3.716431 O b'postag::'
3.606992 Gtype b'word[:2]:Fl'
3.524792 Phase b'lemma:mid-log'
3.467339 Gtype b'lemma:arca8myc'
3.410721 O b'lemma:with'
3.368507 Phase b'lemma:stationary'
3.359342 Gtype b'word[:1]:\xce\x94'
3.271176 O b'+1:lemma:od600'
3.232433 Gtype b'-1:lemma:\xe2\x88\x86'
3.205920 Med b'word[:2]:LB'
3.145263 O b'lemma:.'
3.145263 O b'postag:.'
3.128776 Supp b'+1:lemma:\xc2\xb5m'
3.096928 O b'-1:lemma:Aerobic'
3.056649 O b'word[:1]:S'
3.049272 O b'word[:2]:ge'
2.996386 O b'postag:VBN'
2.992231 O b'word[:2]:Rp'
2.901111 Supp b'lemma:Iron'
2.901111 Supp b'word[:2]:Ir'
2.888425 Supp b'lemma:arginine'
2.815369 Supp b'word[:1]:I'
2.784841 Supp b'lemma:nitrate'
2.784841 Supp b'word[:2]:ni'
2.775372 Med b'word[:1]:M'
2.760314 Air b'-1:lemma:ChIP-Seq'
2.752516 Supp b'-1:lemma:Cra'
2.738888 O b'lemma:delta'
2.690700 Anti b'+1:lemma:antibody'
2.680938 Technique b'word[:2]:RN'
2.640855 O b'-1:lemma:0.3-0.35'
2.630147 O b'word[:2]:Cu'
2.628890 O b'word[:2]:Cr'
2.628035 Supp b'+1:lemma:1'
2.611639 Air b'word[:2]:An'
2.563252 Supp b'+1:lemma:2'
2.537665 Gtype b'word[:2]:cr'
2.505368 Air b'word[:1]:A'
2.488531 O b'word[:1]:G'
2.467070 O b'+1:postag:RB'
2.451239 O b'lemma:argr'
2.433577 Gtype b'lemma:flag-tag'
2.433577 Gtype b'-1:lemma:c-terminal'
2.391502 O b'word[:1]:B'
2.376551 O b'+1:lemma:pq'
2.369827 O b'lemma:-'
2.356850 O b'lemma:A'
2.330843 O b'postag:CC'
2.301360 Med b'word[:1]:L'
2.282908 Gtype b'word[:1]:d'
2.281497 O b'+1:lemma:mid-log'
2.281275 O b'+1:lemma:o.d.'
2.274064 O b'-1:lemma:glucose'
2.272588 Gversion b'-1:lemma:nc'
2.261134 Supp b'lemma:pq'
2.261134 Supp b'word[:2]:PQ'
2.254663 O b'word[:2]:ch'
2.242812 O b'lemma:at'
2.229584 O b'-1:lemma:lb'
2.216086 Gtype b'-1:lemma:_'
2.208080 O b'-1:lemma:anaerobic'
2.203650 Gtype b'lemma:type'
2.203650 Gtype b'word[:2]:ty'
2.188456 Med b'lemma:MOPS'
2.188456 Med b'word[:2]:MO'
2.154914 OD b'word[:1]:O'
2.150169 Supp b'-1:lemma:+'
2.148437 Supp b'+1:lemma:hour'
2.145965 O b'lemma:purr'
2.130562 Strain b'lemma:k-12'
2.130562 Strain b'word[:2]:K-'
2.128273 Gversion b'lemma:chip-seq'
2.124653 Gversion b'lemma:asm584v2'
2.124653 Gversion b'word[:2]:AS'
2.114191 Supp b'word[:2]:mg'
2.079751 Gtype b'lemma:wt'
2.079618 Strain b'word[:1]:K'
2.074663 O b'lemma:rpob'
2.068933 OD b'+1:lemma:stationary'
2.065663 Gversion b'word[:2]:00'
2.061985 O b'lemma:b'
2.056038 Temp b'-1:lemma:sample'
2.053114 Phase b'word[:2]:st'
2.043604 O b'postag:DT'
2.037822 O b'word[:2]:Lr'
2.022730 Gtype b'lemma:nsrr'
2.022730 Gtype b'word[:2]:Ns'
2.021608 Temp b'-1:lemma:\xcf\x8332'
2.002870 Gversion b'lemma:nc'
2.002870 Gversion b'word[:2]:NC'
1.998257 Supp b'lemma:fructose'
1.989806 OD b'word[:2]:OD'
1.984624 O b'word[:2]:fo'
1.983155 Med b'+1:lemma:0.4'
1.978931 Air b'postag:RB'
1.970422 O b'lemma:\xcf\x8332'
1.970422 O b'word[:1]:\xcf\x83'
1.970422 O b'word[:2]:\xcf\x833'
1.968991 Substrain b'lemma:mg1655'
1.968991 Substrain b'word[:2]:MG'
1.949696 O b'lemma:Custom'
1.942668 pH b'lemma:ph5'
1.942668 pH b'+1:lemma:.5'
1.942559 O b'-1:lemma:type'
1.939421 Gtype b'word[:1]:W'
1.927720 O b'lemma:0.4'
1.918769 Air b'lemma:aerobic'
1.911973 Supp b'lemma:rifampicin'
1.899971 Supp b'word[:2]:ri'
1.892762 O b'-1:lemma:stpa'
1.891369 Supp b'word[:2]:gl'
1.883496 Vess b'lemma:flask'
1.883496 Vess b'-1:lemma:warm'
1.883496 Vess b'word[:2]:fl'
1.866473 Gtype b'+1:lemma:type'
1.858048 Gtype b'hGreek'
1.846301 Substrain b'word[:1]:M'
1.843289 Gtype b'+1:lemma:flagtag'
1.839432 Supp b'-1:lemma:with'
1.808519 Anti b'word[:2]:an'
1.796182 Supp b'word[:2]:Fe'
1.770222 Air b'-1:lemma:co2'
1.757419 O b'+1:postag:NNP'
1.756260 Supp b'lemma:acetate'
1.756125 Air b'-1:lemma:phase'
1.744786 Supp b'word[:1]:2'
1.742628 Temp b'lemma:43'
1.742628 Temp b'word[:2]:43'
1.737898 Technique b'lemma:ChIP-exo'
1.733503 Gtype b'lemma:fnr8myc'
1.733503 Gtype b'word[:2]:Fn'
1.717668 O b'+1:lemma:chip-seq'
1.717668 O b'word[:2]:In'
1.711566 Supp b'+1:lemma:_'
1.706442 O b'+1:lemma:anerobically'
1.702869 Temp b'-1:lemma:43'
1.697874 O b'word[:1]:E'
1.679257 O b'+1:lemma:nacl'
1.676751 Temp b'word[:1]:3'
1.674101 Strain b'+1:lemma:substr'
1.668117 Gtype b'+1:lemma::'
1.662871 Gtype b'-1:lemma:rpob'
1.659272 Phase b'+1:lemma:for'
1.658740 Med b'+1:lemma:-lrb-'
1.653292 Supp b'lemma:nacl'
1.645217 Med b'+1:postag:-LRB-'
1.644387 Phase b'-1:lemma:until'
1.633923 Supp b'word[:2]:0.'
1.631245 O b'word[:2]:Om'
1.629217 O b'-1:lemma:\xc2\xb0c'
1.609945 O b'lemma:antibody'
1.602620 O b'word[:2]:Pu'
1.596753 Supp b'word[:2]:ac'
1.589715 Gtype b'word[:2]:so'
1.579402 Supp b'+1:postag:CC'
1.576836 Med b'+1:lemma:supplement'
1.575982 Gtype b'-1:postag:VBG'
1.572483 Supp b'lemma:nh4cl'
1.572483 Supp b'word[:2]:NH'
1.571642 Gtype b'lemma:\xe2\x88\x86'
1.571642 Gtype b'word[:1]:\xe2\x88\x86'
1.541168 Air b'+1:lemma:at'
1.539300 O b'-1:lemma:dpd'
1.538899 Technique b'lemma:rnaseq'
1.524271 pH b'+1:postag:CD'
1.521425 O b'lemma:oxyr'
1.521425 O b'word[:2]:Ox'
1.520812 Supp b'word[:1]:\xc2\xb5'
1.518532 pH b'lemma:.5'
1.518532 pH b'-1:lemma:ph5'
1.518532 pH b'word[:2]:.5'
1.516502 O b'+1:postag::'
1.513634 Temp b'+1:lemma:\xc2\xb0c'
1.512169 Supp b'+1:lemma:and'
1.512098 Gtype b'-1:lemma:ptac'
1.512061 O b'word[:1]:C'
1.511111 Supp b'word[:1]:1'
1.508414 O b'postag:VBG'
1.489242 Med b'postag:NNP'
1.476047 O b'-1:lemma:0.3'
1.472256 Air b'word[:2]:an'
1.471863 Air b'-1:lemma:_'
1.463959 O b'word[:1]:c'
1.460284 O b'lemma:for'
1.457885 Gtype b'+1:lemma:with'
1.450344 Gversion b'word[:2]:Ch'
1.449241 O b'word[:2]:or'
1.445626 Gversion b'lemma:.2'
Top negative:
-0.086688 Air b'symb'
-0.087278 O b'+1:postag:JJ'
-0.088979 O b'lemma:0.1'
-0.090012 Gtype b'lemma:,'
-0.090012 Gtype b'postag:,'
-0.090760 O b'word[:1]:M'
-0.091539 O b'-1:lemma:g/l'
-0.092936 Gtype b'word[:1]:,'
-0.093150 O b'word[:1]:p'
-0.094182 Phase b'-1:postag:JJ'
-0.096715 O b'lemma:e.'
-0.096913 O b'-1:postag:IN'
-0.097475 Gtype b'-1:lemma:mg1655'
-0.097915 Gtype b'+1:lemma:cra'
-0.098266 Supp b'-1:postag:NN'
-0.099523 Gtype b'+1:lemma:-rrb-'
-0.101642 OD b'+1:lemma:0.4'
-0.103503 Gversion b'-1:postag:NN'
-0.104284 Technique b'-1:lemma::'
-0.107474 Air b'-1:postag:CC'
-0.107802 Supp b'+1:lemma:dpd'
-0.109425 O b'lemma:k-12'
-0.109425 O b'word[:2]:K-'
-0.109862 Gtype b'-1:postag:SYM'
-0.110589 O b'-1:lemma:n2'
-0.116375 Med b'postag:NN'
-0.118693 O b'lemma:o2'
-0.118693 O b'word[:2]:O2'
-0.124126 O b'word[:1]:g'
-0.128725 O b'-1:lemma:e.'
-0.131057 O b'-1:postag:VBN'
-0.134797 Supp b'-1:postag:NNP'
-0.134945 Vess b'hUpper'
-0.134945 Vess b'hLower'
-0.141446 O b'lemma:\xc2\xb0c'
-0.141446 O b'word[:1]:\xc2\xb0'
-0.141446 O b'word[:2]:\xc2\xb0C'
-0.148538 O b'-1:lemma:mm'
-0.150981 O b'word[:2]:cr'
-0.154676 OD b'postag:IN'
-0.155036 O b'word[:2]:LB'
-0.160269 O b'-1:lemma:o2'
-0.172623 O b'word[:2]:20'
-0.179442 O b'+1:lemma:fecl2'
-0.180162 O b'+1:lemma:or'
-0.181662 Supp b'-1:postag:VBG'
-0.183004 Air b'postag:CC'
-0.184330 O b'+1:lemma:_'
-0.190642 Gtype b'+1:postag:CD'
-0.193285 Phase b'-1:lemma:at'
-0.196188 O b'lemma:od600'
-0.197981 O b'-1:postag:-LRB-'
-0.201396 pH b'postag:NN'
-0.204068 O b'lemma:co2'
-0.204068 O b'word[:2]:CO'
-0.204520 Supp b'+1:lemma:acetate'
-0.206835 O b'+1:lemma:delta'
-0.210712 O b'word[:2]:gl'
-0.213914 O b'-1:lemma:0.2'
-0.219505 O b'+1:lemma:300'
-0.223188 O b'word[:2]:de'
-0.223436 Gtype b'-1:postag:NN'
-0.224373 O b'-1:lemma:the'
-0.225222 OD b'postag:-LRB-'
-0.225222 OD b'word[:2]:-L'
-0.226307 OD b'lemma:-lrb-'
-0.227748 O b'+1:lemma:dissolve'
-0.230155 Med b'+1:postag:NN'
-0.234353 Air b'-1:lemma:or'
-0.235996 Gtype b'word[:1]:A'
-0.238857 Gtype b'+1:lemma:-lrb-'
-0.240915 O b'+1:lemma:-lcb-'
-0.245779 O b'+1:lemma:%'
-0.254436 O b'+1:lemma:.'
-0.254436 O b'+1:postag:.'
-0.256154 O b'-1:lemma:od600'
-0.258786 Supp b'lemma:2'
-0.267133 O b'lemma:dpd'
-0.267133 O b'word[:2]:DP'
-0.268311 Temp b'-1:lemma:\xc2\xb0c'
-0.268819 O b'lemma:dissolve'
-0.269284 O b'+1:lemma:minimal'
-0.273587 O b'-1:lemma:um'
-0.273587 O b'+1:lemma:paraquat'
-0.283755 O b'+1:lemma:until'
-0.290161 O b'word[:2]:30'
-0.295390 Supp b'+1:postag:VBN'
-0.301685 Anti b'+1:lemma:anti-fur'
-0.310527 Med b'-1:postag:NN'
-0.313589 O b'+1:lemma:arginine'
-0.329477 Temp b'postag:NN'
-0.330016 Gtype b'word[:1]:g'
-0.331259 O b'lemma:150'
-0.331259 O b'+1:lemma:mg/ml'
-0.331259 O b'word[:2]:15'
-0.343722 O b'+1:lemma:antibody'
-0.345190 O b'+1:lemma:rep1'
-0.346985 O b'word[:2]:mg'
-0.352336 O b'-1:lemma:until'
-0.352901 O b'lemma:\xe2\x88\x86'
-0.352901 O b'word[:1]:\xe2\x88\x86'
-0.368005 OD b'+1:postag:CD'
-0.374288 O b'word[:2]:OD'
-0.379040 Technique b'-1:postag::'
-0.379664 O b'word[:1]:K'
-0.381633 Gtype b'-1:lemma:,'
-0.381633 Gtype b'-1:postag:,'
-0.382431 O b'+1:postag:CD'
-0.395128 O b'lemma:of'
-0.395128 O b'word[:2]:of'
-0.403132 O b'+1:lemma:-rrb-'
-0.408197 O b'-1:lemma:1'
-0.409223 Agit b'symb'
-0.412681 O b'+1:lemma:c'
-0.421053 O b'word[:2]:me'
-0.422060 O b'lemma:2h'
-0.422060 O b'-1:lemma:additional'
-0.422060 O b'word[:2]:2h'
-0.432550 O b'+1:lemma:\xc2\xb0c'
-0.442411 O b'-1:lemma:ml'
-0.474987 O b'lemma:20'
-0.493548 Agit b'hUpper'
-0.493548 Agit b'hLower'
-0.497447 O b'-1:lemma:grow'
-0.508442 O b'+1:postag:-RRB-'
-0.511400 O b'lemma:anaerobic'
-0.515457 O b'lemma:37'
-0.515457 O b'word[:2]:37'
-0.516266 Anti b'+1:postag:JJ'
-0.527188 Supp b'+1:lemma:rifampicin'
-0.529171 O b'lemma:anaerobically'
-0.542987 O b'word[:2]:ce'
-0.545817 O b'word[:2]:Fe'
-0.550246 OD b'+1:postag:NN'
-0.555017 O b'-1:lemma:\xe2\x88\x86'
-0.585692 O b'word[:2]:ri'
-0.590663 O b'+1:lemma:cell'
-0.598318 O b'word[:1]:F'
-0.602384 Temp b'+1:lemma:to'
-0.602384 Temp b'+1:postag:TO'
-0.630497 O b'-1:lemma:ompr'
-0.651154 O b'+1:postag:IN'
-0.657357 Air b'+1:postag:JJ'
-0.662332 O b'+1:postag:NNS'
-0.671056 O b'-1:lemma:cra'
-0.677411 O b'postag:RB'
-0.683285 O b'postag:VBP'
-0.704946 Anti b'postag:NNP'
-0.717280 Med b'+1:postag:IN'
-0.747461 Phase b'hUpper'
-0.747461 Phase b'hLower'
-0.771466 Supp b'postag:CD'
-0.774933 O b'word[:1]:N'
-0.784937 Med b'symb'
-0.797919 O b'word[:2]:0.'
-0.823981 O b'word[:1]:d'
-0.834163 O b'lemma:methanol'
-0.845016 Supp b'word[:2]:an'
-0.863890 Temp b'hGreek'
-0.887768 O b'+1:lemma:supplement'
-0.891809 O b'lemma:mid-log'
-0.932608 O b'-1:lemma:dissolve'
-0.932608 O b'+1:lemma:methanol'
-0.938549 Supp b'-1:lemma:%'
-0.941138 O b'+1:lemma:at'
-0.941437 O b'+1:postag:VBG'
-0.966149 O b'-1:lemma:IP'
-0.967650 O b'lemma:rifampicin'
-0.971114 O b'word[:1]:0'
-1.027819 Supp b'word[:1]:C'
-1.038642 O b'-1:lemma:co2'
-1.053342 O b'-1:lemma:sample'
-1.074523 O b'-1:lemma:37'
-1.082863 O b'lemma:wt'
-1.085639 O b'word[:1]:\xce\x94'
-1.088972 O b'+1:lemma:+'
-1.101307 O b'-1:lemma:rpob'
-1.101534 Gtype b'lemma:delta'
-1.131224 O b'-1:postag:VBG'
-1.200680 O b'+1:lemma:g/l'
-1.209964 O b'-1:lemma:nsrr'
-1.223269 Gtype b'word[:1]:C'
-1.236557 Air b'-1:postag:JJ'
-1.342495 O b'+1:lemma:in'
-1.418170 Air b'postag:NN'
-1.475103 Technique b'postag:NN'
-1.489457 Supp b'postag:JJ'
-1.565345 Phase b'postag:JJ'
-1.566076 O b'word[:1]:P'
-1.602127 Supp b'hGreek'
-1.627987 O b'+1:lemma:hour'
-1.632857 O b'-1:postag::'
-1.709919 O b'word[:2]:Ch'
-1.721470 Supp b'symb'
-2.064654 O b'+1:lemma:2'
-2.235497 O b'-1:lemma:2'
-2.286957 OD b'word[:1]:-'
-2.535031 O b'+1:lemma:1'
-3.735809 O b'-1:lemma:_'
-3.940448 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.016463867524667154, 'c2': 0.009787977090088149}
best CV score:0.8002661257453753
model size: 0.09M
Flat F1: 0.7993777341659613
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.812 0.912 0.860 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.865 0.783 0.822 106
Substrain 0.000 0.000 0.000 1
Supp 0.877 0.684 0.769 136
Gversion 0.000 0.000 0.000 0
avg / total 0.870 0.758 0.799 480
Top likely transitions:
Agit -> Agit 6.618554
OD -> OD 6.046990
Med -> Med 5.731787
Anti -> Anti 5.560967
Temp -> Temp 5.475319
O -> O 5.246611
Air -> Air 5.069288
Gversion -> Gversion 4.782679
Phase -> Phase 4.419771
Gtype -> Gtype 4.416987
Supp -> Supp 4.342876
Technique -> Technique 3.476989
pH -> pH 2.858102
Substrain -> Gtype 1.991185
O -> Supp 1.682496
O -> Technique 1.282752
Gtype -> Supp 1.102213
O -> Temp 1.095977
O -> Gtype 1.088815
Technique -> Air 0.953696
Air -> O 0.896546
Gtype -> pH 0.886031
O -> Anti 0.734178
O -> Strain 0.608646
Gtype -> Air 0.454671
O -> Gversion 0.272689
O -> Vess 0.158893
O -> pH 0.140174
Med -> O 0.029214
Phase -> O 0.002020
O -> Agit -0.000006
Anti -> Med -0.000156
Gversion -> Temp -0.000292
Temp -> O -0.000334
Gtype -> Substrain -0.000924
Agit -> OD -0.002021
Strain -> Supp -0.005596
Temp -> OD -0.020991
O -> Phase -0.034932
Med -> Technique -0.051093
Med -> Gtype -0.075674
Gtype -> Temp -0.095825
Gversion -> Gtype -0.096016
OD -> Phase -0.103930
Air -> Technique -0.110545
Gversion -> Technique -0.112689
Phase -> Temp -0.112941
O -> Med -0.122397
Gversion -> OD -0.151378
OD -> Anti -0.154828
Top unlikely transitions:
Gtype -> O -0.318325
Phase -> pH -0.345234
Air -> Gtype -0.347582
Phase -> Air -0.350325
Supp -> O -0.358385
Phase -> Gtype -0.365635
Gversion -> Air -0.381458
Technique -> O -0.390564
Phase -> Med -0.406160
Phase -> Supp -0.460254
Technique -> Supp -0.517689
Med -> Air -0.551360
Anti -> Gtype -0.565812
Gtype -> Technique -0.566337
Air -> Phase -0.631229
OD -> Supp -0.647555
Air -> Temp -0.656794
Supp -> Gversion -0.715756
Supp -> Phase -0.716453
Gtype -> Gversion -0.757530
OD -> Temp -0.788537
Gtype -> Phase -0.824421
Supp -> Gtype -0.884540
Supp -> OD -0.900562
Supp -> Anti -0.903053
Phase -> Technique -0.906097
Anti -> OD -0.909132
O -> Air -0.914911
Agit -> O -0.935018
Gtype -> Med -0.944769
OD -> Gtype -0.960373
OD -> Air -0.960499
Supp -> Temp -0.978389
OD -> Med -1.056468
Supp -> Technique -1.067708
Supp -> Air -1.075407
Temp -> Med -1.177952
Air -> Med -1.190708
Air -> Supp -1.204177
OD -> O -1.212915
Gtype -> Anti -1.370912
Gtype -> OD -1.436838
Air -> OD -1.503021
Technique -> pH -1.506307
Technique -> Gtype -1.536980
Substrain -> O -1.668439
Technique -> OD -1.715161
Supp -> Med -1.733906
Med -> Supp -2.443927
Phase -> OD -3.131759
Top positive:
9.305065 O b'lemma:_'
8.732993 Phase b'lemma:stationary'
7.760917 O b'lemma:1'
7.168896 Supp b'lemma:Iron'
7.028020 Phase b'lemma:mid-log'
6.779175 Air b'lemma:aerobic'
6.665098 O b'lemma:2'
6.423370 O b'lemma:rpob'
6.362007 Technique b'lemma:chipseq'
6.331838 Air b'lemma:anaerobic'
6.325395 Strain b'lemma:k-12'
6.235497 Technique b'lemma:ChIP-exo'
6.089690 O b'lemma:3'
5.978696 O b'-1:lemma:tag'
5.761282 Supp b'lemma:pq'
5.719069 Air b'-1:lemma:ChIP-Seq'
5.577060 O b'lemma:Cra'
5.510085 O b'lemma:rep1'
5.467485 Med b'lemma:MOPS'
5.467177 Gtype b'lemma:flag-tag'
5.467177 Gtype b'-1:lemma:c-terminal'
5.453183 O b'lemma:rep2'
5.426293 Gtype b'lemma:\xce\xb4cra'
5.397017 Gversion b'lemma:asm584v2'
5.390386 Supp b'lemma:nitrate'
5.341842 Supp b'lemma:nh4cl'
5.337281 Gtype b'lemma:arca8myc'
5.304554 O b'lemma:rep3'
5.196226 Supp b'lemma:glucose'
5.117424 Substrain b'lemma:mg1655'
5.026581 Air b'lemma:Aerobic'
4.803005 Med b'lemma:lb'
4.772452 Gtype b'lemma:wt'
4.771894 Supp b'lemma:acetate'
4.766600 Supp b'lemma:no3'
4.729731 Gtype b'lemma:delta-arca'
4.713097 Technique b'lemma:rna-seq'
4.682193 O b'lemma:b'
4.655495 O b'-1:lemma:ChIP-exo'
4.654042 O b'lemma:Custom'
4.608813 O b'lemma:\xcf\x8332'
4.600330 Med b'lemma:LB'
4.589780 Anti b'lemma:none'
4.569387 O b'-1:lemma:Aerobic'
4.552809 Supp b'lemma:Fe'
4.549722 Gtype b'lemma:fnr8myc'
4.469111 O b'lemma:a'
4.442862 Supp b'+1:lemma:\xc2\xb5m'
4.411648 Anti b'lemma:seqa'
4.399167 Technique b'lemma:chip-seq'
4.385270 O b'lemma:with'
4.372699 O b'-1:lemma:0.3-0.35'
4.269887 Supp b'+1:lemma:Deficient'
4.261397 Supp b'lemma:fructose'
4.249331 O b'lemma:.'
4.249331 O b'postag:.'
4.242020 Gtype b'-1:lemma:\xe2\x88\x86'
4.234560 Supp b'lemma:rifampicin'
4.204294 Supp b'-1:lemma:Cra'
4.144998 Technique b'lemma:rnaseq'
4.131518 O b'-1:lemma:glucose'
4.112814 O b'lemma:CEL'
4.104546 Gtype b'lemma:delta-fnr'
4.079795 Supp b'+1:lemma:1'
4.079552 O b'postag::'
4.058149 Gversion b'lemma:chip-seq'
4.037325 O b'lemma:for'
4.034489 Supp b'lemma:dpd'
4.010338 Strain b'+1:lemma:substr'
3.921894 Supp b'lemma:arginine'
3.871845 Med b'lemma:m63'
3.869832 O b'lemma:-'
3.804951 OD b'lemma:od450'
3.804811 OD b'lemma:od600'
3.798413 Gtype b'+1:lemma:type'
3.780914 Supp b'+1:lemma:2'
3.777061 O b'lemma:oxyr'
3.772675 Gtype b'lemma:nsrr'
3.768154 O b'postag:IN'
3.745620 O b'-1:lemma:0.3'
3.739942 O b'-1:lemma:lb'
3.716105 O b'+1:postag:RB'
3.704808 O b'lemma:ompr'
3.699123 Gtype b'lemma:\xce\xb4fur'
3.679821 O b'-1:lemma:anaerobic'
3.674972 Gtype b'lemma:WT'
3.633705 Med b'+1:lemma:0.4'
3.613670 O b'lemma:chip-arca'
3.584593 Anti b'lemma:anti-myc'
3.583514 Gtype b'+1:lemma:with'
3.582395 Gtype b'lemma:type'
3.580941 Gversion b'lemma:nc'
3.569260 Vess b'lemma:flask'
3.569260 Vess b'-1:lemma:warm'
3.558952 Gtype b'lemma:\xce\xb4soxs'
3.551122 O b'+1:lemma:od600'
3.521427 OD b'+1:lemma:stationary'
3.499509 Gtype b'lemma:\xe2\x88\x86'
3.497229 O b'lemma:s'
3.444243 O b'lemma:affyexp'
3.441867 O b'lemma:at'
3.432521 O b'lemma:argr'
3.430692 O b'lemma:2-3'
3.429569 O b'lemma:or'
3.420226 pH b'lemma:ph5'
3.420226 pH b'+1:lemma:.5'
3.329303 Supp b'+1:lemma:_'
3.325338 Air b'lemma:anerobically'
3.313930 Phase b'+1:lemma:for'
3.313428 Air b'lemma:Anaerobic'
3.306548 Gtype b'lemma:\xce\xb4ompr'
3.295126 Gversion b'lemma:u00096'
3.295126 Gversion b'+1:lemma:.2'
3.293291 O b'lemma:purr'
3.280062 O b'postag:VBN'
3.276907 Med b'+1:lemma:minimal'
3.266429 Gversion b'lemma:.2'
3.266429 Gversion b'-1:lemma:u00096'
3.204837 Technique b'lemma:ChIP-Seq'
3.195028 Supp b'lemma:Leu'
3.194814 Air b'postag:RB'
3.190453 Gtype b'lemma:wild-type'
3.189580 Gversion b'lemma:000913'
3.165016 O b'+1:lemma:o.d.'
3.164940 O b'-1:lemma:stpa'
3.152706 Gtype b'-1:lemma:ptac'
3.148350 Supp b'-1:lemma:+'
3.129438 Gversion b'-1:lemma:nc'
3.118509 Supp b'lemma:nacl'
3.114692 O b'lemma:Lrp'
3.092621 Supp b'lemma:Adenine'
3.091939 O b'lemma:soxs'
3.091939 O b'lemma:soxr'
3.077192 O b'-1:lemma:type'
3.075201 Gtype b'lemma:pk4854'
3.057817 Med b'+1:lemma:2.0'
3.055002 Gtype b'lemma:deltaseqa'
3.055002 Gtype b'-1:lemma:old'
3.024702 Temp b'lemma:\xc2\xb0c'
3.023864 Gtype b'lemma:\xce\xb4soxr'
3.009504 Technique b'-1:lemma:chip-exo'
2.999113 O b'+1:lemma:chip-seq'
2.997979 Gtype b'lemma:\xce\xb4oxyr'
2.994098 O b'+1:lemma:pq'
2.988197 Technique b'-1:lemma:IP'
2.978971 Gtype b'+1:lemma:flagtag'
2.950109 Gtype b'+1:lemma:pq'
2.932317 O b'lemma:Fur'
2.930678 Temp b'lemma:43'
2.927639 Supp b'+1:lemma:hour'
2.912329 Technique b'-1:lemma:input'
2.909510 Gtype b'lemma:ptac'
2.890332 O b'+1:lemma:mid-log'
2.887693 Anti b'+1:lemma:antibody'
2.861197 Phase b'-1:lemma:until'
2.834560 O b'lemma:pt7'
2.813666 Temp b'-1:lemma:43'
2.812461 Med b'-1:lemma:LB'
2.807067 O b'+1:lemma:anti-fur'
2.805769 Med b'lemma:glucose'
2.792580 Med b'postag:NNP'
2.791499 Substrain b'+1:lemma:phtpg'
2.780205 Anti b'lemma:anti-rpos'
2.775436 O b'lemma:chip'
2.773005 Air b'lemma:anaerobically'
2.745128 Technique b'+1:lemma:chip-exo'
2.707884 Temp b'-1:lemma:37'
2.695840 Gtype b'-1:lemma:rpob'
2.695400 O b'lemma:A'
2.688169 Gtype b'+1:lemma:aerobic'
2.675347 O b'-1:lemma:media'
2.666679 Gversion b'lemma:_'
2.657459 O b'lemma:chip-fnr'
2.651315 O b'+1:lemma:sparging'
2.632748 Air b'-1:lemma:-'
2.627781 Med b'-1:lemma:ml'
2.615678 Temp b'lemma:37'
2.605568 Supp b'lemma:iptg'
2.594624 O b'postag:SYM'
2.562170 Med b'lemma:L'
2.562170 Med b'+1:lemma:broth'
2.557929 Air b'-1:lemma:anerobically'
2.557567 Supp b'lemma:methanol'
2.541889 Air b'+1:lemma:at'
2.532330 pH b'lemma:.5'
2.532330 pH b'-1:lemma:ph5'
2.504689 Gtype b'lemma:dfnr'
2.502393 Supp b'lemma:leucine'
2.498877 O b'+1:postag:NNP'
2.497838 O b'lemma:culture'
2.494675 Supp b'+1:lemma:leucine'
2.484413 Med b'+1:lemma:-lrb-'
2.481062 Technique b'postag:NNP'
2.479247 O b'lemma:genotype/variation'
2.478491 O b'lemma:delta'
2.475426 Gtype b'lemma:soxs-8myc'
2.475426 Gtype b'lemma:soxr-8myc'
2.462314 Temp b'-1:lemma:\xcf\x8332'
2.420303 O b'-1:lemma:min'
2.407878 O b'-1:lemma:\xc2\xb0c'
Top negative:
-0.078472 Gtype b'-1:lemma:,'
-0.078472 Gtype b'-1:postag:,'
-0.082841 Gtype b'+1:lemma:cra'
-0.082999 O b'-1:postag:IN'
-0.084148 O b'+1:lemma:sample'
-0.086745 Air b'-1:lemma:-rrb-'
-0.089656 O b'-1:lemma:delta'
-0.090120 Supp b'+1:lemma:glucose'
-0.094631 Med b'+1:lemma:media'
-0.096766 OD b'+1:postag:CD'
-0.101591 Anti b'+1:postag:JJ'
-0.105414 Air b'postag:CD'
-0.106119 O b'+1:lemma:5'
-0.106327 O b'lemma:glucose'
-0.106774 O b'-1:lemma:300'
-0.110381 O b'+1:lemma:strain'
-0.115429 OD b'+1:lemma:mid-log'
-0.116504 O b'-1:lemma:o2'
-0.116849 O b'lemma:8'
-0.117115 Air b'-1:postag:-RRB-'
-0.131943 O b'-1:postag:VBP'
-0.140837 O b'+1:lemma:-rrb-'
-0.145581 O b'lemma:o2'
-0.145602 Med b'-1:postag:NN'
-0.148797 Gtype b'+1:lemma:a'
-0.149824 O b'+1:lemma:antibody'
-0.155765 OD b'+1:lemma:0.4'
-0.160857 O b'-1:lemma:Fe'
-0.165249 Supp b'-1:postag:NN'
-0.176258 O b'lemma:n2'
-0.179426 Gtype b'-1:postag:DT'
-0.190182 O b'lemma:nacl'
-0.190914 O b'lemma:paraquat'
-0.199978 O b'-1:lemma:affinity'
-0.202133 Phase b'lemma:pahse'
-0.206981 O b'-1:lemma:-lrb-'
-0.209922 O b'-1:lemma:purify'
-0.212225 O b'-1:lemma:e.'
-0.214834 Phase b'-1:lemma:at'
-0.215972 O b'lemma:grow'
-0.220853 O b'+1:postag:-RRB-'
-0.233967 O b'+1:lemma:0.4'
-0.234246 O b'lemma:m63'
-0.234336 O b'+1:lemma:delta'
-0.236935 O b'-1:lemma:iptg'
-0.237356 Supp b'-1:lemma:-'
-0.238564 Temp b'-1:postag:IN'
-0.241298 O b'lemma:lb'
-0.252180 Air b'-1:lemma:or'
-0.259409 Gtype b'-1:postag:CD'
-0.263557 Gtype b'postag:CD'
-0.263957 O b'lemma:e.'
-0.273851 O b'+1:lemma:-lcb-'
-0.277750 Supp b'-1:lemma:and'
-0.279144 O b'-1:lemma:um'
-0.279144 O b'+1:lemma:paraquat'
-0.282397 O b'-1:postag:-LRB-'
-0.283298 Supp b'+1:postag:IN'
-0.287914 Gtype b'+1:postag:NNS'
-0.295366 O b'lemma:co2'
-0.297637 Med b'+1:postag:NNS'
-0.299889 Med b'-1:lemma:MOPS'
-0.302541 O b'lemma:aerobically'
-0.306345 Supp b'lemma:and'
-0.309099 O b'-1:lemma:n2'
-0.312324 Gversion b'+1:postag:NN'
-0.315967 O b'-1:lemma:g/l'
-0.323765 O b'+1:lemma:or'
-0.331216 O b'-1:lemma:20'
-0.334167 O b'-1:lemma:30'
-0.344013 O b'+1:lemma:cell'
-0.344949 O b'postag:RB'
-0.346100 O b'lemma:of'
-0.352206 Temp b'-1:lemma:\xc2\xb0c'
-0.355150 OD b'postag:JJ'
-0.358507 O b'+1:lemma:from'
-0.364055 O b'+1:lemma:shake'
-0.367716 O b'lemma:minimal'
-0.372888 Gtype b'postag:NNS'
-0.374545 O b'+1:lemma:.'
-0.374545 O b'+1:postag:.'
-0.376161 pH b'postag:NN'
-0.376856 O b'-1:lemma:minimal'
-0.379126 Phase b'-1:postag:JJ'
-0.380474 O b'lemma:mg1655'
-0.388065 Technique b'-1:lemma::'
-0.398201 O b'+1:postag:IN'
-0.405322 O b'+1:lemma:minimal'
-0.424455 O b'lemma:30'
-0.427384 O b'+1:lemma:until'
-0.436028 O b'-1:lemma:fresh'
-0.460571 O b'-1:lemma:from'
-0.465690 O b'-1:lemma:grow'
-0.476082 O b'lemma:\xc2\xb0c'
-0.479886 O b'+1:lemma:b'
-0.490814 OD b'+1:postag:NN'
-0.494543 Med b'+1:postag:IN'
-0.502282 O b'-1:lemma:0.1'
-0.522523 O b'+1:lemma:%'
-0.524523 Supp b'+1:postag:VBN'
-0.531557 O b'+1:lemma:c'
-0.538489 O b'+1:lemma:_'
-0.550066 OD b'lemma:-lrb-'
-0.556057 Med b'+1:postag:NN'
-0.559263 O b'-1:lemma:with'
-0.566146 O b'+1:lemma:300'
-0.569839 O b'-1:lemma:od600'
-0.574777 O b'-1:lemma:rifampicin'
-0.580814 O b'-1:lemma:~'
-0.580908 O b'lemma:phase'
-0.595586 O b'-1:lemma:co2'
-0.603665 O b'+1:lemma:dissolve'
-0.610355 O b'lemma:k-12'
-0.623982 O b'-1:lemma:mid-log'
-0.633959 Med b'postag:CD'
-0.640260 O b'+1:lemma:Aerobic'
-0.655574 OD b'postag:-LRB-'
-0.666724 Technique b'-1:postag::'
-0.670459 O b'lemma:od600'
-0.673345 OD b'+1:lemma:and'
-0.674316 Temp b'postag:NN'
-0.676209 Gtype b'lemma:delta'
-0.694986 Gtype b'-1:postag:SYM'
-0.708935 Gtype b'+1:lemma:\xe2\x88\x86'
-0.723413 O b'+1:lemma:phase'
-0.728416 O b'-1:lemma:cra'
-0.739107 O b'lemma:dissolve'
-0.745574 Med b'lemma:-lrb-'
-0.748120 O b'-1:lemma:1'
-0.779677 Med b'postag:-LRB-'
-0.783075 Supp b'-1:postag:VBG'
-0.805015 Supp b'+1:lemma:rifampicin'
-0.822331 O b'lemma:mid-log'
-0.826614 O b'+1:lemma:\xc2\xb0c'
-0.828084 O b'-1:lemma:\xe2\x88\x86'
-0.834813 O b'lemma:150'
-0.834813 O b'+1:lemma:mg/ml'
-0.847218 O b'+1:lemma:arginine'
-0.850600 O b'lemma:purify'
-0.856637 O b'+1:lemma:rep1'
-0.863375 Supp b'postag:CC'
-0.911226 O b'+1:lemma:0.3'
-0.939105 OD b'+1:postag:CC'
-0.955944 Air b'-1:postag:JJ'
-0.962224 O b'lemma:media'
-0.965799 O b'-1:lemma:0.2'
-0.969028 O b'lemma:anaerobically'
-0.984393 Supp b'+1:lemma:acetate'
-0.986157 O b'lemma:20'
-0.994939 O b'+1:postag:NNS'
-1.003238 O b'lemma:\xe2\x88\x86'
-1.020262 O b'lemma:dpd'
-1.021474 O b'+1:postag:VBG'
-1.023814 O b'-1:lemma:until'
-1.028655 Temp b'+1:lemma:to'
-1.028655 Temp b'+1:postag:TO'
-1.034923 O b'+1:lemma:fecl2'
-1.048621 O b'+1:lemma:in'
-1.093228 Anti b'+1:lemma:anti-fur'
-1.117750 O b'+1:lemma:supplement'
-1.118079 O b'-1:lemma:dissolve'
-1.118079 O b'+1:lemma:methanol'
-1.153383 Med b'-1:postag:IN'
-1.161827 O b'lemma:0.1'
-1.240288 O b'lemma:0.2'
-1.240360 O b'lemma:0.3'
-1.281903 O b'-1:lemma:ml'
-1.331319 O b'lemma:\xce\xb4fur'
-1.347884 O b'lemma:2h'
-1.347884 O b'-1:lemma:additional'
-1.412330 O b'lemma:fecl2'
-1.425201 O b'lemma:anaerobic'
-1.445822 O b'+1:lemma:at'
-1.482178 Air b'+1:postag:JJ'
-1.484222 O b'-1:lemma:sample'
-1.563764 Supp b'-1:lemma:%'
-1.568716 O b'+1:lemma:g/l'
-1.573165 O b'-1:postag:VBG'
-1.579364 Air b'postag:NN'
-1.717872 O b'-1:lemma:IP'
-1.738726 O b'postag:VBP'
-1.761183 Supp b'postag:JJ'
-1.765703 O b'lemma:wt'
-1.767819 O b'lemma:37'
-1.807701 O b'-1:postag::'
-1.827545 O b'lemma:rifampicin'
-1.961081 Anti b'postag:NNP'
-2.001886 O b'-1:lemma:ompr'
-2.126948 O b'-1:lemma:nsrr'
-2.271346 O b'-1:lemma:rpob'
-2.333080 O b'lemma:methanol'
-2.336287 O b'-1:lemma:37'
-2.381339 O b'-1:lemma:2'
-2.515516 O b'+1:lemma:2'
-2.555444 O b'+1:lemma:hour'
-2.633630 O b'+1:lemma:+'
-2.844080 Phase b'postag:JJ'
-3.202166 O b'+1:lemma:1'
-3.918526 O b'-1:lemma:_'
-4.322819 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.09081091923387723, 'c2': 0.00038627878700387623}
best CV score:0.7938633983009262
model size: 0.07M
best params:{'c1': 0.15010361345548673, 'c2': 5.707111790479162e-05}
best CV score:0.797496608146535
model size: 0.06M
Flat F1: 0.786870840829875
Flat F1: 0.7827228028395358
precision recall f1-score support
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.776 0.912 0.839 57
Med 0.803 0.860 0.831 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Air 0.780 0.742 0.760 62
Anti 0.571 0.444 0.500 9
Strain 1.000 1.000 1.000 1
Gtype 0.860 0.811 0.835 106
Gtype 0.857 0.792 0.824 106
Substrain 0.000 0.000 0.000 1
Supp 0.819 0.699 0.754 136
Supp 0.810 0.691 0.746 136
Gversion 0.000 0.000 0.000 0
avg / total 0.824 0.765 0.787 480
avg / total 0.828 0.752 0.783 480
Top likely transitions:
Agit -> Agit 7.136396
OD -> OD 6.491625
Temp -> Temp 6.283086
Anti -> Anti 6.213232
Med -> Med 5.995903
Phase -> Phase 5.618998
Gtype -> Gtype 5.237438
Air -> Air 5.151876
Gversion -> Gversion 4.933604
O -> O 4.847296
Technique -> Technique 4.762002
Supp -> Supp 4.623411
Gtype -> Supp 1.707940
pH -> pH 1.691677
O -> Technique 1.635878
O -> Supp 1.559728
O -> Gtype 1.022656
Substrain -> Gtype 0.995104
O -> Anti 0.583807
O -> Temp 0.467612
O -> Gversion 0.453034
Technique -> Air 0.359052
Air -> O 0.273813
O -> Med 0.235768
Temp -> O 0.115990
Gtype -> Air 0.085028
Med -> O 0.063901
Phase -> Air -0.013623
Strain -> O -0.015319
Air -> Phase -0.018991
O -> OD -0.096097
Supp -> Air -0.152980
Supp -> Gtype -0.172882
O -> Phase -0.230569
Gtype -> Anti -0.419137
Technique -> O -0.465846
Air -> Supp -0.504152
OD -> Air -0.526665
Gtype -> O -0.592689
Supp -> O -0.617787
Technique -> OD -0.675268
Phase -> O -0.805307
OD -> Med -0.848210
O -> Air -0.948079
Supp -> Med -0.972720
Agit -> O -1.032994
OD -> O -1.111875
Gtype -> OD -1.121470
Air -> OD -1.294245
Substrain -> O -1.829982
Agit -> Agit 7.341089
OD -> OD 6.495857
Anti -> Anti 6.092589
Med -> Med 6.071567
Temp -> Temp 5.874329
Air -> Air 5.660813
Gtype -> Gtype 5.201158
Phase -> Phase 5.016982
Gversion -> Gversion 4.915266
O -> O 4.868094
Technique -> Technique 4.801722
Supp -> Supp 4.049658
pH -> pH 2.237488
Substrain -> Gtype 1.851589
O -> Technique 1.624886
O -> Supp 1.553107
Gtype -> Supp 1.547690
Air -> O 1.440675
O -> Gtype 1.359381
O -> Anti 0.638902
Technique -> Air 0.616017
Med -> O 0.445325
O -> Temp 0.344531
O -> Gversion 0.281572
Temp -> O 0.271329
O -> Med 0.092068
Phase -> O 0.061858
Gtype -> pH 0.046191
Anti -> O 0.018884
Gtype -> Air 0.007955
O -> OD -0.012110
OD -> Med -0.056297
Technique -> O -0.194680
Gtype -> Anti -0.249294
Supp -> O -0.300903
Gtype -> O -0.529562
Agit -> O -0.538328
OD -> O -0.737964
Supp -> Med -0.744059
Gtype -> OD -0.843006
O -> Air -0.935708
Substrain -> O -1.186882
Phase -> OD -1.409016
Med -> Supp -2.610420
Top unlikely transitions:
Temp -> Temp 6.283086
Anti -> Anti 6.213232
Med -> Med 5.995903
Phase -> Phase 5.618998
Gtype -> Gtype 5.237438
Air -> Air 5.151876
Gversion -> Gversion 4.933604
O -> O 4.847296
Technique -> Technique 4.762002
Supp -> Supp 4.623411
Gtype -> Supp 1.707940
pH -> pH 1.691677
O -> Technique 1.635878
O -> Supp 1.559728
O -> Gtype 1.022656
Substrain -> Gtype 0.995104
O -> Anti 0.583807
O -> Temp 0.467612
O -> Gversion 0.453034
Technique -> Air 0.359052
Air -> O 0.273813
O -> Med 0.235768
Temp -> O 0.115990
Gtype -> Air 0.085028
Med -> O 0.063901
Phase -> Air -0.013623
Strain -> O -0.015319
Air -> Phase -0.018991
O -> OD -0.096097
Supp -> Air -0.152980
Supp -> Gtype -0.172882
O -> Phase -0.230569
Gtype -> Anti -0.419137
Technique -> O -0.465846
Air -> Supp -0.504152
OD -> Air -0.526665
Gtype -> O -0.592689
Supp -> O -0.617787
Technique -> OD -0.675268
Phase -> O -0.805307
OD -> Med -0.848210
O -> Air -0.948079
Supp -> Med -0.972720
Agit -> O -1.032994
OD -> O -1.111875
Gtype -> OD -1.121470
Air -> OD -1.294245
Substrain -> O -1.829982
Phase -> OD -2.186140
Med -> Supp -2.693786
Agit -> Agit 7.341089
OD -> OD 6.495857
Anti -> Anti 6.092589
Med -> Med 6.071567
Temp -> Temp 5.874329
Air -> Air 5.660813
Gtype -> Gtype 5.201158
Phase -> Phase 5.016982
Gversion -> Gversion 4.915266
O -> O 4.868094
Technique -> Technique 4.801722
Supp -> Supp 4.049658
pH -> pH 2.237488
Substrain -> Gtype 1.851589
O -> Technique 1.624886
O -> Supp 1.553107
Gtype -> Supp 1.547690
Air -> O 1.440675
O -> Gtype 1.359381
O -> Anti 0.638902
Technique -> Air 0.616017
Med -> O 0.445325
O -> Temp 0.344531
O -> Gversion 0.281572
Temp -> O 0.271329
O -> Med 0.092068
Phase -> O 0.061858
Gtype -> pH 0.046191
Anti -> O 0.018884
Gtype -> Air 0.007955
O -> OD -0.012110
OD -> Med -0.056297
Technique -> O -0.194680
Gtype -> Anti -0.249294
Supp -> O -0.300903
Gtype -> O -0.529562
Agit -> O -0.538328
OD -> O -0.737964
Supp -> Med -0.744059
Gtype -> OD -0.843006
O -> Air -0.935708
Substrain -> O -1.186882
Phase -> OD -1.409016
Med -> Supp -2.610420
Top positive:
12.023128 Supp b'lemma:Iron'
11.905802 Phase b'lemma:stationary'
10.567265 O b'lemma:_'
10.151152 Air b'-1:lemma:ChIP-Seq'
10.090491 Air b'lemma:anaerobic'
9.857898 Supp b'lemma:nitrate'
9.629833 Air b'lemma:aerobic'
9.577578 Technique b'lemma:ChIP-exo'
9.036653 Phase b'lemma:mid-log'
8.721963 Technique b'lemma:chipseq'
8.698132 Med b'lemma:MOPS'
8.668936 O b'lemma:1'
8.103505 O b'-1:lemma:ChIP-exo'
7.864122 O b'lemma:rpob'
7.451473 Strain b'lemma:k-12'
7.338543 O b'lemma:\xcf\x8332'
7.198959 Air b'lemma:Aerobic'
7.109572 Gtype b'lemma:flag-tag'
7.109572 Gtype b'-1:lemma:c-terminal'
7.044978 Supp b'lemma:pq'
6.899921 O b'lemma:2'
6.897717 Gtype b'lemma:\xce\xb4cra'
6.862453 O b'lemma:Custom'
6.848216 O b'-1:lemma:tag'
6.753546 Gversion b'lemma:asm584v2'
6.751054 O b'lemma:b'
6.726115 Technique b'lemma:ChIP-Seq'
6.340232 O b'lemma:a'
6.324324 Med b'lemma:LB'
6.242158 O b'lemma:3'
6.225748 O b'lemma:rep1'
6.183760 Gversion b'-1:lemma:nc'
6.139494 O b'lemma:for'
6.136397 O b'lemma:rep2'
6.112373 O b'-1:lemma:Aerobic'
6.052426 Gtype b'lemma:delta-arca'
6.021691 Supp b'+1:lemma:\xc2\xb5m'
6.014827 O b'lemma:rep3'
5.998278 Gtype b'lemma:arca8myc'
5.864622 Gtype b'lemma:fnr8myc'
5.838163 Supp b'lemma:Fe'
5.756687 Substrain b'lemma:mg1655'
5.628610 O b'lemma:Cra'
5.609519 Gtype b'+1:lemma:type'
5.519720 Gtype b'lemma:type'
5.487434 OD b'+1:lemma:stationary'
5.465596 Gversion b'lemma:nc'
5.326426 Gtype b'lemma:delta-fnr'
5.265842 Anti b'lemma:none'
5.236408 Supp b'lemma:nh4cl'
5.195640 O b'postag::'
5.136998 Med b'lemma:lb'
5.129499 OD b'lemma:od450'
5.106518 Technique b'lemma:rna-seq'
5.084990 O b'-1:lemma:anaerobic'
4.986922 Gtype b'lemma:wt'
4.943309 Supp b'lemma:acetate'
4.879656 Gtype b'lemma:\xce\xb4fur'
4.846650 Technique b'lemma:chip-seq'
4.825495 O b'-1:lemma:0.3-0.35'
4.812352 Gtype b'-1:lemma:\xe2\x88\x86'
4.769607 Supp b'lemma:glucose'
4.759235 O b'-1:lemma:glucose'
4.740317 Supp b'lemma:arginine'
4.738816 Supp b'lemma:rifampicin'
4.701038 Gversion b'lemma:chip-seq'
4.693852 Gtype b'lemma:nsrr'
4.666819 O b'lemma:chip'
4.666777 Air b'lemma:anerobically'
4.665470 O b'lemma:or'
4.635435 Temp b'-1:lemma:sample'
4.605663 O b'lemma:.'
4.605663 O b'postag:.'
4.574656 OD b'lemma:od600'
4.562061 O b'postag:IN'
4.550601 Anti b'lemma:anti-myc'
4.537492 Gtype b'+1:lemma:ph5'
4.523129 O b'-1:lemma:type'
4.511181 Strain b'+1:lemma:substr'
4.493105 O b'+1:lemma:od600'
4.453065 Vess b'lemma:flask'
4.453065 Vess b'-1:lemma:warm'
4.444663 Supp b'lemma:no3'
4.439485 Technique b'+1:lemma:chip-exo'
4.416181 Gtype b'+1:lemma:flagtag'
4.415325 Supp b'-1:lemma:Cra'
4.396509 Supp b'-1:lemma:+'
4.383866 Gtype b'-1:lemma:ptac'
4.365928 O b'+1:lemma:sparging'
4.354534 O b'+1:postag:RB'
4.348783 Med b'+1:lemma:0.4'
4.341814 O b'-1:lemma:0.3'
4.336456 O b'+1:lemma:chip-seq'
4.269719 O b'lemma:with'
4.219193 Anti b'lemma:seqa'
4.194527 Supp b'+1:lemma:hour'
4.154345 Gtype b'lemma:\xe2\x88\x86'
4.105460 O b'lemma:-'
4.045385 Temp b'-1:lemma:\xcf\x8332'
4.041775 Supp b'lemma:dpd'
4.018422 O b'lemma:oxyr'
4.006587 Med b'+1:lemma:minimal'
3.994386 Gtype b'-1:lemma:rpob'
3.943397 pH b'lemma:ph5'
3.943397 pH b'+1:lemma:.5'
3.925919 Supp b'lemma:fructose'
3.913579 Supp b'+1:lemma:1'
3.908385 O b'+1:postag:NNP'
3.803339 O b'+1:lemma:o.d.'
3.758844 Technique b'lemma:rnaseq'
3.730482 Technique b'+1:lemma:rna-seq'
3.692271 Technique b'-1:lemma:IP'
3.684645 O b'lemma:ompr'
3.679500 O b'-1:lemma:lb'
3.642465 Anti b'+1:lemma:antibody'
3.624491 O b'lemma:s'
3.612874 O b'lemma:2-3'
3.606456 Gtype b'+1:lemma:pq'
3.584554 O b'lemma:soxs'
3.584554 O b'lemma:soxr'
3.545385 O b'lemma:CEL'
3.527179 Gversion b'lemma:u00096'
3.527179 Gversion b'+1:lemma:.2'
3.525538 Technique b'-1:lemma:chip-exo'
3.525111 Anti b'lemma:anti-rpos'
3.517186 O b'postag:VBN'
3.489661 Supp b'lemma:Leu'
3.480284 Supp b'lemma:iptg'
3.469423 Temp b'-1:lemma:43'
3.467975 Gtype b'lemma:pk4854'
3.443002 OD b'-1:lemma:about'
3.435842 Gtype b'lemma:\xce\xb4ompr'
3.435548 Med b'+1:lemma:contain'
3.393209 Med b'lemma:m63'
3.390757 Gversion b'lemma:.2'
3.390757 Gversion b'-1:lemma:u00096'
3.365623 Gtype b'lemma:wild-type'
3.365137 Supp b'+1:lemma:_'
3.285213 O b'-1:lemma:\xc2\xb0c'
3.270674 Air b'lemma:anaerobically'
3.263042 Gversion b'lemma:000913'
3.243898 Gtype b'lemma:\xce\xb4soxs'
3.241988 O b'lemma:at'
3.241694 Supp b'lemma:Adenine'
3.235960 Supp b'+1:lemma:2'
3.220154 Substrain b'+1:lemma:phtpg'
3.168232 O b'lemma:chip-arca'
3.124706 Med b'-1:lemma:ml'
3.119275 Gtype b'lemma:deltaseqa'
3.119275 Gtype b'-1:lemma:old'
3.105855 Phase b'-1:lemma:until'
3.104880 Supp b'lemma:nacl'
3.063586 Phase b'+1:lemma:for'
3.062511 O b'lemma:argr'
3.057692 Temp b'-1:lemma:37'
3.030255 O b'lemma:purr'
3.006731 O b'-1:lemma:media'
2.937639 O b'+1:lemma:pq'
2.930516 Supp b'lemma:methanol'
2.918452 Temp b'+1:lemma:\xc2\xb0c'
2.915173 Gtype b'lemma:WT'
2.909714 OD b'-1:lemma:~'
2.900692 Med b'lemma:L'
2.900692 Med b'+1:lemma:broth'
2.899989 Gtype b'lemma:ptac'
2.898928 O b'+1:lemma:rifampicin'
2.878667 pH b'lemma:.5'
2.878667 pH b'-1:lemma:ph5'
2.877293 O b'postag:DT'
2.875342 O b'+1:lemma:mid-log'
2.845729 Gtype b'+1:lemma:with'
2.833330 Temp b'lemma:\xc2\xb0c'
2.821959 Supp b'-1:lemma:\xc2\xb5m'
2.778935 O b'-1:lemma:dpd'
2.716093 Supp b'+1:lemma:iptg'
2.714614 Supp b'+1:lemma:Deficient'
2.696864 Gtype b'-1:lemma:phtpg'
2.687105 Air b'+1:lemma:at'
2.676418 O b'lemma:affyexp'
2.676025 Gtype b'lemma:\xce\xb4soxr'
2.663692 Gtype b'lemma:\xce\xb4oxyr'
2.658854 Med b'+1:lemma:2.0'
2.651224 Gtype b'lemma:dfnr'
2.649576 O b'-1:lemma:l1'
2.620669 Air b'postag:RB'
2.577561 O b'lemma:Lrp'
2.570022 Med b'+1:lemma:g/l'
2.524794 Technique b'-1:lemma:input'
2.523784 O b'-1:lemma:min'
2.517414 O b'+1:postag:VBP'
2.471571 O b'+1:lemma:acetate'
2.464652 O b'postag:VBG'
2.464091 Air b'-1:lemma:phase'
2.457715 OD b'lemma:0.3'
2.425241 Gtype b'lemma:soxs-8myc'
2.425241 Gtype b'lemma:soxr-8myc'
2.406446 O b'+1:lemma:0.2'
2.380330 Temp b'lemma:37'
2.356535 Temp b'lemma:43'
2.340361 Supp b'lemma:leucine'
14.131694 Supp b'lemma:Iron'
10.668753 Phase b'lemma:stationary'
9.969031 O b'lemma:_'
9.952965 Air b'lemma:anaerobic'
9.573463 Air b'lemma:aerobic'
9.006576 Supp b'lemma:nitrate'
8.765618 Med b'lemma:MOPS'
8.630149 Air b'-1:lemma:ChIP-Seq'
8.541642 O b'lemma:1'
8.103189 Technique b'lemma:ChIP-exo'
8.056769 Strain b'lemma:k-12'
7.747915 Phase b'lemma:mid-log'
7.630132 O b'lemma:Custom'
7.452221 O b'-1:lemma:ChIP-exo'
7.430108 O b'lemma:rpob'
7.256881 O b'-1:lemma:tag'
7.192950 O b'lemma:\xcf\x8332'
7.181976 Gversion b'-1:lemma:nc'
6.998365 Gversion b'lemma:asm584v2'
6.702349 Technique b'lemma:chipseq'
6.548039 Supp b'lemma:pq'
6.424562 O b'lemma:2'
6.390388 Gtype b'lemma:\xce\xb4cra'
6.379061 Air b'lemma:Aerobic'
6.327455 Substrain b'lemma:mg1655'
6.271147 O b'lemma:3'
6.216371 O b'lemma:rep1'
6.036273 Gtype b'lemma:type'
5.982713 Gtype b'lemma:flag-tag'
5.982713 Gtype b'-1:lemma:c-terminal'
5.978106 O b'lemma:rep2'
5.928876 Supp b'+1:lemma:\xc2\xb5m'
5.927978 O b'lemma:rep3'
5.711298 OD b'lemma:od600'
5.700340 Gversion b'lemma:nc'
5.674933 Med b'lemma:LB'
5.635847 O b'lemma:b'
5.491319 Supp b'lemma:rifampicin'
5.340763 OD b'lemma:od450'
5.280658 Supp b'lemma:nh4cl'
5.236869 O b'postag::'
5.185016 O b'postag:IN'
5.179346 O b'lemma:a'
5.171656 O b'lemma:Cra'
5.156885 Supp b'lemma:glucose'
5.045265 Gtype b'-1:lemma:\xe2\x88\x86'
5.014858 Technique b'lemma:rna-seq'
5.004572 Supp b'lemma:Fe'
4.986002 Anti b'lemma:none'
4.960380 OD b'+1:lemma:stationary'
4.954569 Gtype b'lemma:wt'
4.846980 O b'-1:lemma:0.3'
4.808425 O b'-1:lemma:0.3-0.35'
4.735890 Supp b'lemma:arginine'
4.724865 Gtype b'lemma:arca8myc'
4.722199 O b'lemma:or'
4.712517 Gtype b'lemma:delta-arca'
4.694670 Med b'lemma:lb'
4.665780 Supp b'lemma:acetate'
4.592959 O b'-1:lemma:Aerobic'
4.582847 Supp b'lemma:dpd'
4.579677 Anti b'lemma:seqa'
4.553469 Technique b'lemma:ChIP-Seq'
4.524775 Gtype b'lemma:fnr8myc'
4.512285 Gtype b'lemma:\xce\xb4fur'
4.453319 Supp b'lemma:fructose'
4.385121 Vess b'lemma:flask'
4.385121 Vess b'-1:lemma:warm'
4.362610 Gtype b'+1:lemma:type'
4.241639 Technique b'lemma:chip-seq'
4.222711 O b'lemma:-'
4.122116 Technique b'+1:lemma:chip-exo'
4.119390 O b'lemma:.'
4.119390 O b'postag:.'
4.094206 Anti b'lemma:anti-myc'
4.064301 Gtype b'+1:lemma:ph5'
4.047658 O b'+1:lemma:od600'
4.033297 Temp b'-1:lemma:sample'
4.027077 Temp b'-1:lemma:\xcf\x8332'
3.988494 Supp b'lemma:no3'
3.987819 Gtype b'lemma:delta-fnr'
3.965541 Technique b'lemma:rnaseq'
3.901419 Gtype b'lemma:wild-type'
3.858758 Gtype b'lemma:nsrr'
3.839972 O b'-1:lemma:anaerobic'
3.809743 O b'lemma:chip'
3.768275 Gtype b'-1:lemma:rpob'
3.759291 O b'+1:postag:NNP'
3.753503 Technique b'-1:lemma:IP'
3.744094 Gtype b'-1:lemma:ptac'
3.724227 O b'-1:lemma:type'
3.681895 Gtype b'+1:lemma:flagtag'
3.671930 Anti b'lemma:anti-rpos'
3.640672 O b'postag:VBN'
3.635571 Supp b'-1:lemma:+'
3.615075 Gversion b'lemma:chip-seq'
3.609485 Supp b'+1:lemma:1'
3.603583 Gtype b'lemma:\xe2\x88\x86'
3.583908 Gversion b'lemma:u00096'
3.583908 Gversion b'+1:lemma:.2'
3.578924 Supp b'lemma:methanol'
3.558572 O b'+1:postag:RB'
3.531371 O b'lemma:CEL'
3.519433 Med b'+1:lemma:0.4'
3.514351 Supp b'lemma:iptg'
3.492482 pH b'lemma:ph5'
3.492482 pH b'+1:lemma:.5'
3.478227 O b'lemma:for'
3.447690 O b'-1:lemma:glucose'
3.435499 O b'lemma:oxyr'
3.435413 Anti b'+1:lemma:antibody'
3.406205 Med b'lemma:m63'
3.361046 O b'lemma:s'
3.340573 Gtype b'lemma:\xce\xb4ompr'
3.334851 Supp b'-1:lemma:\xc2\xb5m'
3.300340 O b'lemma:with'
3.267870 Supp b'-1:lemma:Cra'
3.225692 Supp b'+1:lemma:2'
3.198663 Supp b'lemma:nacl'
3.197021 Air b'lemma:anaerobically'
3.140248 Strain b'+1:lemma:substr'
3.081035 O b'lemma:ompr'
3.072833 Supp b'+1:lemma:hour'
3.032040 Supp b'+1:lemma:_'
3.019379 Gtype b'+1:lemma:with'
3.003302 Gtype b'lemma:pk4854'
2.949430 Gtype b'+1:lemma:pq'
2.942687 Supp b'lemma:Leu'
2.920502 Med b'-1:lemma:ml'
2.911185 Temp b'-1:lemma:37'
2.907442 O b'+1:lemma:chip-seq'
2.901178 Gversion b'lemma:.2'
2.901178 Gversion b'-1:lemma:u00096'
2.895104 Med b'+1:lemma:2.0'
2.847883 Technique b'-1:lemma:chip-exo'
2.841679 Air b'lemma:anerobically'
2.787857 OD b'-1:lemma:about'
2.786869 O b'lemma:at'
2.783750 Supp b'lemma:20'
2.722669 pH b'lemma:.5'
2.722669 pH b'-1:lemma:ph5'
2.714038 Air b'-1:lemma:-'
2.712647 Technique b'+1:lemma:rna-seq'
2.694003 O b'postag:DT'
2.684568 O b'lemma:soxs'
2.684568 O b'lemma:soxr'
2.665698 Med b'+1:lemma:minimal'
2.649710 O b'+1:lemma:o.d.'
2.645351 O b'+1:lemma:sparging'
2.643627 Gtype b'lemma:\xce\xb4soxs'
2.641818 Med b'lemma:media'
2.594213 Gtype b'-1:lemma:phtpg'
2.579796 Gtype b'-1:lemma:nsrr'
2.565558 O b'lemma:condition'
2.564623 Gtype b'lemma:deltaseqa'
2.564623 Gtype b'-1:lemma:old'
2.553746 Substrain b'+1:lemma:phtpg'
2.552012 O b'postag:VBG'
2.519921 O b'+1:lemma:pq'
2.506331 O b'-1:lemma:lb'
2.497453 OD b'lemma:0.3'
2.462504 O b'+1:lemma:acetate'
2.438317 O b'-1:lemma:stpa'
2.438025 Supp b'+1:lemma:iptg'
2.427624 Supp b'+1:lemma:and'
2.425953 Med b'+1:lemma:g/l'
2.424623 Supp b'lemma:Adenine'
2.400881 Technique b'-1:lemma:input'
2.375136 O b'-1:lemma:media'
2.359950 Supp b'lemma:0.2'
2.343865 Med b'+1:lemma:supplement'
2.341893 O b'-1:lemma:l1'
2.334122 O b'lemma:culture'
2.293428 Temp b'lemma:\xc2\xb0c'
2.283387 Gversion b'lemma:000913'
2.277001 Temp b'lemma:37'
2.270319 Temp b'lemma:43'
2.267164 Gversion b'postag:CD'
2.265729 Supp b'lemma:0.1'
2.263323 Gtype b'-1:lemma:vector'
2.252869 O b'lemma:chip-arca'
2.246589 O b'-1:lemma:dpd'
2.245090 Gtype b'lemma:ptac'
2.239134 Med b'lemma:L'
2.239134 Med b'+1:lemma:broth'
2.238728 Gtype b'+1:lemma:_'
2.225573 Temp b'-1:lemma:43'
2.222881 O b'+1:postag:VBP'
2.192564 OD b'-1:lemma:~'
2.185774 Air b'postag:RB'
2.184138 Phase b'-1:lemma:mid-log'
2.182400 Phase b'-1:lemma:until'
2.180459 Med b'lemma:broth'
2.180459 Med b'-1:lemma:L'
2.178459 Gtype b'lemma:\xce\xb4oxyr'
2.172998 Med b'lemma:glucose'
2.081891 Supp b'-1:lemma:with'
2.081163 O b'lemma:Lrp'
2.056042 Supp b'lemma:of'
2.054403 O b'+1:lemma:rifampicin'
Top negative:
0.000037 OD b'+1:lemma:\xce\xb4soxr'
0.000031 Technique b'+1:lemma:Anaerobic'
0.000028 OD b'-1:lemma:phase'
0.000026 Agit b'-1:postag:VBG'
0.000015 Agit b'+1:postag:IN'
0.000015 O b'lemma:input'
0.000014 OD b'+1:postag:RB'
0.000012 O b'-1:lemma:Fur'
0.000010 Supp b'+1:lemma:feso4'
0.000010 O b'+1:lemma:ChIP-Seq'
0.000005 O b'-1:lemma:250'
0.000004 OD b'lemma::'
0.000004 Agit b'postag:VBG'
0.000003 OD b'postag::'
0.000001 Temp b'-1:postag:NNS'
-0.000008 O b'lemma:mg1655'
-0.000009 O b'-1:lemma:sample'
-0.000026 O b'-1:lemma:e.'
-0.000069 O b'-1:lemma:1'
-0.000210 Gtype b'-1:postag:NNP'
-0.000267 O b'+1:lemma:co2'
-0.000316 Gtype b'+1:lemma:2'
-0.000469 O b'+1:lemma:rep1'
-0.001404 O b'-1:lemma:at'
-0.002564 Med b'+1:postag:CC'
-0.002647 OD b'lemma:~'
-0.002825 O b'lemma:grow'
-0.003590 O b'lemma:anaerobic'
-0.004607 O b'+1:lemma:dissolve'
-0.005282 Supp b'+1:lemma:of'
-0.008060 OD b'+1:postag:-LRB-'
-0.008731 OD b'+1:postag:-RRB-'
-0.009571 O b'-1:lemma:30'
-0.010095 O b'lemma:m63'
-0.010149 Phase b'lemma:pahse'
-0.010429 Gtype b'+1:lemma:-'
-0.012754 Supp b'lemma:mm'
-0.013827 OD b'+1:lemma:~'
-0.014292 O b'+1:lemma:grow'
-0.015852 OD b'+1:postag:CD'
-0.016820 O b'lemma:25'
-0.017788 OD b'+1:lemma:-rrb-'
-0.019574 O b'+1:lemma:~'
-0.025256 O b'+1:lemma:300'
-0.026121 O b'+1:lemma:0.4'
-0.028318 O b'lemma:o2'
-0.029040 Anti b'+1:lemma:anti-fur'
-0.030350 OD b'+1:lemma:0.4'
-0.030931 Med b'+1:postag:NNS'
-0.033897 O b'-1:lemma:mm'
-0.035604 O b'+1:lemma:o2'
-0.035916 O b'-1:lemma:the'
-0.035990 O b'+1:lemma:arginine'
-0.036415 Air b'-1:lemma:anaerobically'
-0.040153 Air b'-1:postag:CC'
-0.041154 O b'+1:lemma:antibody'
-0.041832 Anti b'-1:postag:NN'
-0.045053 OD b'postag:IN'
-0.047572 Gtype b'+1:postag:IN'
-0.053112 Supp b'+1:lemma:dpd'
-0.053329 O b'-1:lemma:minimal'
-0.060576 O b'-1:postag:IN'
-0.065925 O b'lemma:medium'
-0.066353 O b'+1:lemma:25'
-0.076464 Med b'-1:postag:NN'
-0.078443 Supp b'-1:postag:NN'
-0.078865 Strain b'+1:postag:NN'
-0.091232 Air b'postag:CD'
-0.091763 O b'lemma:30'
-0.095656 O b'lemma:lb'
-0.098575 O b'+1:lemma:shake'
-0.100589 Anti b'+1:postag:JJ'
-0.109250 Supp b'+1:postag:IN'
-0.113108 Agit b'postag:NN'
-0.113815 O b'-1:lemma:o2'
-0.117553 O b'+1:lemma:5'
-0.121789 Supp b'lemma:and'
-0.122865 Gtype b'-1:postag:NN'
-0.129126 O b'lemma:glucose'
-0.130690 O b'-1:lemma:of'
-0.132633 O b'+1:lemma:phase'
-0.134059 OD b'+1:postag:CC'
-0.141756 Air b'-1:lemma:95'
-0.143614 O b'-1:lemma:-lrb-'
-0.149012 O b'+1:lemma:\xc2\xb0c'
-0.155150 O b'+1:postag:NNS'
-0.160903 O b'+1:lemma:-rrb-'
-0.161363 O b'lemma:n2'
-0.162536 O b'postag:VBP'
-0.168298 O b'-1:lemma:n2'
-0.171249 O b'-1:postag:VBN'
-0.176512 O b'lemma:aerobically'
-0.186672 O b'lemma:co2'
-0.186766 O b'+1:lemma:_'
-0.196943 Strain b'postag:NN'
-0.201827 O b'+1:lemma:mm'
-0.206537 O b'-1:postag:-LRB-'
-0.214121 Supp b'postag:CC'
-0.215072 O b'lemma:e.'
-0.235225 O b'-1:lemma:0.1'
-0.261548 O b'lemma:\xce\xb4fur'
-0.264532 O b'-1:lemma:rifampicin'
-0.272491 O b'-1:lemma:0.2'
-0.284244 O b'-1:lemma:from'
-0.285360 O b'-1:lemma:until'
-0.286318 Med b'postag:CD'
-0.287177 Air b'-1:lemma:or'
-0.304066 O b'lemma:150'
-0.304066 O b'+1:lemma:mg/ml'
-0.304896 O b'+1:lemma:or'
-0.309102 O b'+1:postag:-RRB-'
-0.331291 Supp b'-1:postag:NNP'
-0.339237 Med b'+1:postag:IN'
-0.352184 O b'postag:RB'
-0.361577 Gtype b'postag:CD'
-0.367320 O b'-1:lemma:ml'
-0.377900 O b'lemma:dissolve'
-0.378236 O b'+1:lemma:.'
-0.378236 O b'+1:postag:.'
-0.378886 O b'+1:lemma:until'
-0.380197 O b'lemma:od600'
-0.380556 O b'-1:lemma:od600'
-0.388687 O b'lemma:phase'
-0.393310 O b'+1:lemma:0.3'
-0.399102 O b'+1:postag:IN'
-0.399168 Temp b'postag:JJ'
-0.401235 O b'-1:lemma:~'
-0.410916 O b'-1:lemma:rpob'
-0.431448 OD b'lemma:-lrb-'
-0.434432 Technique b'-1:lemma::'
-0.444259 Supp b'+1:postag:VBN'
-0.459196 Technique b'-1:postag::'
-0.459291 OD b'+1:lemma:and'
-0.470209 O b'lemma:\xe2\x88\x86'
-0.486291 O b'+1:lemma:%'
-0.518507 O b'-1:lemma:IP'
-0.519707 Phase b'-1:lemma:at'
-0.526678 O b'lemma:dpd'
-0.534234 Air b'-1:postag:JJ'
-0.540044 pH b'postag:NN'
-0.542011 O b'+1:lemma:c'
-0.553114 O b'-1:lemma:grow'
-0.571198 O b'lemma:0.3'
-0.573213 Med b'+1:postag:NN'
-0.592187 Temp b'postag:NN'
-0.596509 O b'-1:lemma:mid-log'
-0.616998 O b'lemma:media'
-0.625245 O b'+1:lemma:cell'
-0.625847 O b'-1:lemma:cra'
-0.668364 Gversion b'+1:postag:NN'
-0.670411 O b'+1:lemma:+'
-0.670829 O b'lemma:anaerobically'
-0.693082 Supp b'+1:lemma:rifampicin'
-0.727079 O b'-1:lemma:dissolve'
-0.727079 O b'+1:lemma:methanol'
-0.738408 O b'+1:lemma:fecl2'
-0.792874 O b'lemma:20'
-0.848889 OD b'+1:postag:NN'
-0.848997 Supp b'+1:lemma:acetate'
-0.861900 Med b'-1:postag:IN'
-0.865385 O b'lemma:0.2'
-0.892622 Temp b'+1:lemma:to'
-0.892622 Temp b'+1:postag:TO'
-0.937071 O b'+1:lemma:supplement'
-0.938360 O b'-1:lemma:co2'
-0.960239 O b'lemma:2h'
-0.960239 O b'-1:lemma:additional'
-0.973815 O b'lemma:of'
-1.034828 O b'+1:postag:VBG'
-1.035428 O b'+1:lemma:g/l'
-1.050289 O b'lemma:mid-log'
-1.059894 O b'-1:postag:VBG'
-1.066538 O b'lemma:0.1'
-1.076597 O b'-1:postag::'
-1.106329 Phase b'+1:postag:NN'
-1.148398 Phase b'-1:postag:NN'
-1.172180 Air b'+1:postag:JJ'
-1.201626 O b'lemma:37'
-1.206293 OD b'postag:-LRB-'
-1.252513 O b'-1:lemma:37'
-1.399946 O b'+1:lemma:at'
-1.439837 O b'lemma:wt'
-1.474885 O b'-1:lemma:nsrr'
-1.521797 O b'lemma:fecl2'
-1.544569 Anti b'postag:NNP'
-1.548585 O b'+1:lemma:hour'
-1.566877 Supp b'-1:lemma:%'
-1.597712 O b'+1:lemma:in'
-1.629113 O b'-1:lemma:ompr'
-1.773656 Air b'postag:NN'
-1.898147 Phase b'-1:postag:JJ'
-2.222432 O b'lemma:rifampicin'
-2.229376 O b'-1:lemma:2'
-2.493849 O b'+1:lemma:1'
-2.529260 O b'lemma:methanol'
-2.707675 O b'+1:lemma:2'
-2.830767 Supp b'postag:JJ'
-2.988306 Phase b'postag:JJ'
-4.548731 O b'-1:lemma::'
-4.577007 O b'-1:lemma:_'
0.004444 OD b'+1:lemma:~'
0.002512 O b'+1:lemma:media'
0.002348 Technique b'-1:postag:NNP'
0.001954 Anti b'-1:lemma:monoclonal'
0.001373 Supp b'lemma:250'
0.001330 O b'+1:lemma:n2'
0.001020 OD b'-1:lemma:cell'
0.000979 Air b'lemma:70'
0.000779 Gtype b'-1:lemma:of'
0.000613 Agit b'+1:lemma:at'
0.000612 OD b'-1:postag:VBN'
0.000570 Anti b'-1:postag:NN'
0.000562 OD b'+1:postag:VBN'
0.000343 OD b'postag:VBN'
0.000250 Supp b'lemma:feso4'
0.000211 Supp b'lemma:um'
0.000200 O b'lemma:harvest'
0.000172 Supp b'-1:lemma:250'
0.000169 O b'+1:lemma:harvest'
0.000161 O b'+1:lemma:minute'
0.000152 O b'+1:lemma:rna'
0.000142 Gtype b'lemma:input'
0.000138 Gtype b'lemma:mutant'
0.000125 Gtype b'lemma:-rcb-'
0.000110 Gtype b'postag::'
0.000080 Phase b'-1:postag:IN'
0.000061 Phase b'+1:lemma:aerobically'
0.000056 OD b'postag:IN'
0.000055 Phase b'+1:postag:RB'
0.000045 Supp b'lemma:2'
0.000036 OD b'+1:lemma:mid-log'
0.000020 O b'-1:lemma:m9'
0.000015 Supp b'lemma:\xc2\xb5m'
0.000013 Supp b'-1:lemma:10'
0.000012 O b'+1:postag:SYM'
0.000012 Med b'-1:lemma:g/l'
0.000011 O b'+1:lemma:min'
-0.000010 O b'-1:lemma:g/l'
-0.000013 O b'lemma:cell'
-0.000022 O b'-1:lemma:1'
-0.000023 O b'+1:lemma:mm'
-0.000025 O b'+1:lemma:medium'
-0.000054 Gtype b'+1:lemma:2'
-0.000084 O b'lemma:10'
-0.000087 OD b'-1:postag:DT'
-0.000166 Gtype b'postag:CD'
-0.000166 O b'+1:lemma:rep1'
-0.000189 O b'-1:lemma:um'
-0.000189 O b'+1:lemma:paraquat'
-0.000301 O b'lemma:m63'
-0.000348 OD b'+1:postag:NNS'
-0.000501 OD b'+1:postag:-LRB-'
-0.001014 O b'lemma:lb'
-0.001025 O b'+1:lemma:300'
-0.001085 O b'+1:lemma:minimal'
-0.001319 O b'+1:lemma:phase'
-0.001982 O b'+1:lemma:fnr'
-0.002311 O b'+1:lemma:grow'
-0.003075 O b'+1:lemma:until'
-0.003743 O b'+1:lemma:0.3'
-0.004269 O b'lemma:grow'
-0.004318 O b'+1:lemma:0.4'
-0.005882 O b'+1:lemma:25'
-0.005961 O b'-1:lemma:,'
-0.005961 O b'-1:postag:,'
-0.006723 O b'-1:lemma:n2'
-0.006973 Air b'-1:lemma:and'
-0.007306 Supp b'-1:lemma:for'
-0.007868 O b'lemma:5'
-0.011921 O b'lemma:95'
-0.012399 O b'-1:lemma:95'
-0.015125 O b'+1:lemma:antibody'
-0.018199 O b'lemma:25'
-0.020534 OD b'-1:lemma:a'
-0.021998 O b'-1:lemma:25'
-0.024040 OD b'+1:lemma:and'
-0.027503 O b'-1:lemma:70'
-0.030355 Air b'postag:CC'
-0.031431 O b'-1:postag:VBN'
-0.034243 OD b'+1:postag:CD'
-0.035178 O b'-1:lemma:mm'
-0.037036 Air b'-1:lemma:aerobically'
-0.044409 O b'-1:lemma:-lrb-'
-0.045497 O b'-1:lemma:\xe2\x88\x86'
-0.053514 O b'+1:lemma:o2'
-0.057056 pH b'postag:NN'
-0.059321 O b'lemma:e.'
-0.060480 O b'+1:lemma:arginine'
-0.064459 O b'-1:lemma:0.1'
-0.065478 O b'lemma:o2'
-0.086735 O b'-1:postag:IN'
-0.088151 Supp b'postag:CC'
-0.090770 O b'+1:lemma:5'
-0.090829 Med b'+1:postag:NNS'
-0.097005 O b'-1:lemma:e.'
-0.102356 O b'-1:lemma:from'
-0.105701 O b'-1:lemma:rifampicin'
-0.107290 Supp b'lemma:and'
-0.111321 Gtype b'+1:postag:IN'
-0.122840 O b'+1:lemma:-rrb-'
-0.131840 O b'-1:lemma:mid-log'
-0.136836 OD b'+1:postag:CC'
-0.145723 O b'-1:postag:-LRB-'
-0.146980 O b'-1:lemma:o2'
-0.156899 O b'-1:lemma:of'
-0.167701 Phase b'-1:lemma:at'
-0.175342 Anti b'+1:postag:JJ'
-0.183517 OD b'+1:postag:NN'
-0.190021 O b'-1:lemma:30'
-0.208806 Temp b'postag:NN'
-0.208824 Temp b'postag:JJ'
-0.215629 O b'lemma:co2'
-0.221546 Air b'-1:lemma:or'
-0.241850 O b'lemma:\xe2\x88\x86'
-0.242801 Technique b'-1:lemma::'
-0.243926 Supp b'+1:postag:VBN'
-0.244243 O b'lemma:30'
-0.246547 Med b'-1:postag:IN'
-0.268422 O b'-1:lemma:ml'
-0.274527 Med b'+1:postag:IN'
-0.289790 O b'+1:postag:IN'
-0.291195 O b'+1:postag:-RRB-'
-0.293140 Med b'+1:postag:NN'
-0.299342 O b'lemma:phase'
-0.302946 O b'+1:postag:NNS'
-0.306118 O b'+1:lemma:.'
-0.306118 O b'+1:postag:.'
-0.308929 Gtype b'-1:postag:NN'
-0.317569 Air b'-1:postag:CC'
-0.323438 Phase b'-1:postag:NN'
-0.327100 O b'-1:lemma:cra'
-0.329119 Med b'-1:postag:NN'
-0.343139 O b'+1:lemma:+'
-0.359236 O b'+1:lemma:%'
-0.360527 Air b'postag:CD'
-0.364000 O b'lemma:0.3'
-0.365750 O b'lemma:aerobically'
-0.415947 O b'-1:lemma:sample'
-0.429967 O b'-1:lemma:od600'
-0.455391 O b'lemma:dissolve'
-0.463970 O b'postag:RB'
-0.467344 Technique b'-1:postag::'
-0.494024 Temp b'+1:lemma:to'
-0.494024 Temp b'+1:postag:TO'
-0.508881 O b'-1:lemma:rpob'
-0.523986 O b'lemma:media'
-0.535749 Air b'-1:postag:JJ'
-0.551274 O b'lemma:anaerobically'
-0.552430 Phase b'+1:postag:NN'
-0.564731 O b'lemma:20'
-0.567109 O b'-1:lemma:0.2'
-0.605741 O b'-1:lemma:grow'
-0.649536 O b'lemma:0.2'
-0.661223 Supp b'+1:lemma:rifampicin'
-0.663522 O b'-1:lemma:37'
-0.665065 O b'+1:lemma:fecl2'
-0.666478 Phase b'-1:postag:JJ'
-0.681434 O b'lemma:od600'
-0.706506 Temp b'-1:lemma:\xc2\xb0c'
-0.709880 O b'+1:lemma:\xc2\xb0c'
-0.721412 O b'-1:lemma:~'
-0.727136 Supp b'+1:lemma:acetate'
-0.743650 O b'lemma:of'
-0.759091 O b'lemma:37'
-0.796823 OD b'lemma:-lrb-'
-0.837874 O b'-1:postag:VBG'
-0.842130 O b'+1:lemma:supplement'
-0.871087 O b'+1:postag:VBG'
-0.919085 O b'-1:postag::'
-0.932643 O b'lemma:0.1'
-0.946063 O b'+1:lemma:cell'
-0.951793 O b'lemma:mid-log'
-0.985731 OD b'postag:-LRB-'
-1.000812 O b'-1:lemma:dissolve'
-1.000812 O b'+1:lemma:methanol'
-1.091362 Supp b'-1:lemma:%'
-1.092178 O b'lemma:rifampicin'
-1.111288 O b'-1:lemma:IP'
-1.125339 O b'lemma:fecl2'
-1.126515 O b'-1:lemma:co2'
-1.133055 O b'lemma:2h'
-1.133055 O b'-1:lemma:additional'
-1.239727 O b'+1:lemma:g/l'
-1.309169 Air b'+1:postag:JJ'
-1.364763 O b'+1:lemma:at'
-1.408904 Anti b'postag:NNP'
-1.492174 O b'lemma:wt'
-1.496119 O b'-1:lemma:nsrr'
-1.510760 O b'lemma:methanol'
-1.588382 O b'+1:lemma:hour'
-1.669770 Air b'postag:NN'
-1.787096 O b'+1:lemma:in'
-1.897543 O b'-1:lemma:ompr'
-1.915892 Supp b'postag:JJ'
-2.106107 O b'-1:lemma:2'
-2.456830 O b'+1:lemma:2'
-2.489947 Phase b'postag:JJ'
-2.935122 O b'+1:lemma:1'
-4.717358 O b'-1:lemma::'
-4.976926 O b'-1:lemma:_'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.07999002423801141, 'c2': 0.000868661924339573}
best CV score:0.8083684694714717
model size: 0.12M
Flat F1: 0.797188910586862
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.878 0.754 0.811 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 1.000 0.742 0.852 62
Anti 0.571 0.444 0.500 9
Strain 1.000 1.000 1.000 1
Gtype 0.842 0.802 0.821 106
Substrain 0.000 0.000 0.000 1
Supp 0.819 0.699 0.754 136
Gversion 0.000 0.000 0.000 0
avg / total 0.880 0.744 0.797 480
Top likely transitions:
Agit -> Agit 6.851914
Temp -> Temp 6.755805
Anti -> Anti 6.408411
OD -> OD 6.070648
Med -> Med 5.592163
Gtype -> Gtype 5.552172
Gversion -> Gversion 5.270252
Air -> Air 4.673888
Supp -> Supp 4.485002
Phase -> Phase 4.276420
O -> O 4.272212
Technique -> Technique 3.801130
pH -> pH 2.239489
Gtype -> Supp 1.797612
O -> Gtype 1.020757
O -> Technique 0.845864
O -> Supp 0.684262
O -> Anti 0.542673
Substrain -> Gtype 0.423988
Technique -> Air 0.409033
O -> Temp 0.245701
Med -> O 0.105696
O -> Gversion 0.000171
Gtype -> pH 0.000014
Technique -> OD -0.019259
Vess -> O -0.025654
pH -> O -0.063409
Air -> OD -0.082675
Air -> Temp -0.095090
Air -> O -0.133376
Supp -> OD -0.159102
Anti -> O -0.247448
OD -> Air -0.261699
Gtype -> Med -0.274175
OD -> Gtype -0.277593
Strain -> O -0.369145
Phase -> Air -0.387062
O -> Phase -0.394932
Phase -> O -0.493736
Supp -> O -0.534752
Air -> Phase -0.600512
Supp -> Air -0.640514
OD -> Med -0.713090
Technique -> O -0.754114
Technique -> Gtype -0.754511
O -> OD -0.776176
O -> Med -0.780627
Gtype -> O -0.801612
Gtype -> OD -0.934362
Air -> Med -1.257535
Top unlikely transitions:
Supp -> Supp 4.485002
Phase -> Phase 4.276420
O -> O 4.272212
Technique -> Technique 3.801130
pH -> pH 2.239489
Gtype -> Supp 1.797612
O -> Gtype 1.020757
O -> Technique 0.845864
O -> Supp 0.684262
O -> Anti 0.542673
Substrain -> Gtype 0.423988
Technique -> Air 0.409033
O -> Temp 0.245701
Med -> O 0.105696
O -> Gversion 0.000171
Gtype -> pH 0.000014
Technique -> OD -0.019259
Vess -> O -0.025654
pH -> O -0.063409
Air -> OD -0.082675
Air -> Temp -0.095090
Air -> O -0.133376
Supp -> OD -0.159102
Anti -> O -0.247448
OD -> Air -0.261699
Gtype -> Med -0.274175
OD -> Gtype -0.277593
Strain -> O -0.369145
Phase -> Air -0.387062
O -> Phase -0.394932
Phase -> O -0.493736
Supp -> O -0.534752
Air -> Phase -0.600512
Supp -> Air -0.640514
OD -> Med -0.713090
Technique -> O -0.754114
Technique -> Gtype -0.754511
O -> OD -0.776176
O -> Med -0.780627
Gtype -> O -0.801612
Gtype -> OD -0.934362
Air -> Med -1.257535
Gtype -> Anti -1.262843
OD -> O -1.377165
Supp -> Med -1.741716
Agit -> O -1.885756
Substrain -> O -1.895216
Med -> Supp -2.409765
O -> Air -2.508634
Phase -> OD -2.584465
Top positive:
11.849885 Air b'word:Aerobic'
7.837435 Air b'lemma:anaerobic'
7.665723 O b'word:Cra'
7.042313 Air b'word:Anaerobic'
6.037970 O b'lemma:_'
6.037970 O b'word:_'
5.584218 O b'postag::'
5.431231 O b'-1:lemma:ChIP-exo'
5.349382 Med b'lemma:MOPS'
5.349382 Med b'word:MOPS'
5.289872 Technique b'word:ChIP-Seq'
5.021757 Supp b'lemma:nh4cl'
4.898148 O b'lemma:Custom'
4.898148 O b'word:Custom'
4.861257 Phase b'lemma:stationary'
4.861257 Phase b'word:stationary'
4.814387 Technique b'lemma:rna-seq'
4.799463 Technique b'word:ChIPSeq'
4.773443 Supp b'lemma:nitrate'
4.773443 Supp b'word:nitrate'
4.681396 O b'+1:postag:RB'
4.678066 Supp b'-1:word:Cra'
4.674952 Technique b'word:ChIP-exo'
4.673460 O b'lemma:rpob'
4.673460 O b'word:RpoB'
4.632286 Med b'word:LB'
4.272192 Supp b'lemma:pq'
4.272192 Supp b'word:PQ'
4.216477 Supp b'lemma:arginine'
4.158847 O b'lemma:1'
4.158847 O b'word:1'
4.061171 Gtype b'lemma:wild-type'
4.017592 O b'lemma:chip'
3.861964 OD b'+1:lemma:stationary'
3.861964 OD b'+1:word:stationary'
3.805796 O b'-1:lemma:tag'
3.744431 O b'-1:word:Aerobic'
3.714272 Supp b'lemma:Iron'
3.714272 Supp b'word:Iron'
3.714272 Supp b'+1:word:Deficient'
3.713062 Strain b'lemma:k-12'
3.713062 Strain b'word:K-12'
3.708676 Technique b'lemma:ChIP-exo'
3.655103 O b'lemma:at'
3.537057 Air b'postag:RB'
3.506119 Gversion b'lemma:asm584v2'
3.506119 Gversion b'word:ASM584v2'
3.457008 O b'-1:word:Anaerobic'
3.440372 O b'lemma:for'
3.381566 Gversion b'lemma:chip-seq'
3.373670 Gtype b'lemma:delta-fnr'
3.373670 Gtype b'word:delta-fnr'
3.345890 O b'lemma:a'
3.268014 Gversion b'-1:lemma:nc'
3.268014 Gversion b'-1:word:NC'
3.225995 Air b'word:anaerobic'
3.223526 Substrain b'lemma:mg1655'
3.223526 Substrain b'word:MG1655'
3.207086 O b'word:Lrp'
3.199909 Gversion b'lemma:nc'
3.199909 Gversion b'word:NC'
3.184836 O b'lemma:2'
3.184836 O b'word:2'
3.184258 O b'-1:word:tag'
3.161968 Gtype b'lemma:type'
3.161968 Gtype b'word:type'
3.129124 O b'lemma:.'
3.129124 O b'postag:.'
3.129124 O b'word:.'
3.035046 O b'lemma:2-3'
3.035046 O b'word:2-3'
3.031993 Gtype b'lemma:\xce\xb4cra'
3.023750 Gtype b'word:\xce\x94cra'
3.015053 O b'-1:lemma:lb'
2.985389 O b'postag:IN'
2.963040 O b'+1:word:ChIP-Seq'
2.954499 Gtype b'-1:lemma:\xe2\x88\x86'
2.954499 Gtype b'-1:word:\xe2\x88\x86'
2.921032 Gtype b'lemma:flag-tag'
2.921032 Gtype b'-1:lemma:c-terminal'
2.921032 Gtype b'word:Flag-tag'
2.921032 Gtype b'-1:word:C-terminal'
2.914388 O b'lemma:3'
2.914388 O b'word:3'
2.889633 Supp b'+1:lemma:\xc2\xb5m'
2.889633 Supp b'+1:word:\xc2\xb5M'
2.855964 Technique b'-1:lemma:chip-exo'
2.841382 Temp b'-1:word:sample'
2.838133 Med b'lemma:LB'
2.837407 Gtype b'lemma:wt'
2.815709 Phase b'lemma:mid-log'
2.815709 Phase b'word:mid-log'
2.815078 O b'word:OmpR'
2.800233 Temp b'-1:lemma:sample'
2.743118 Anti b'lemma:seqa'
2.743118 Anti b'word:SeqA'
2.738947 Gtype b'lemma:arca8myc'
2.738947 Gtype b'word:ArcA8myc'
2.734940 Supp b'lemma:rifampicin'
2.734940 Supp b'word:rifampicin'
2.713912 Technique b'lemma:rnaseq'
2.713912 Technique b'word:RNASeq'
2.676140 O b'+1:postag:NNP'
2.668046 Gtype b'postag:-RRB-'
2.666708 O b'lemma:rep1'
2.666708 O b'word:rep1'
2.639615 O b'word:for'
2.628763 O b'lemma:with'
2.628763 O b'word:with'
2.602495 O b'lemma:b'
2.602495 O b'word:B'
2.600005 O b'+1:postag:VBP'
2.593478 Supp b'+1:word:hours'
2.586011 Technique b'lemma:chipseq'
2.559150 Strain b'+1:lemma:substr'
2.559150 Strain b'+1:word:substr'
2.527855 Supp b'lemma:no3'
2.527855 Supp b'word:NO3'
2.521274 O b'lemma:-'
2.521274 O b'word:-'
2.481893 O b'lemma:rep3'
2.481893 O b'word:rep3'
2.477491 Gtype b'word:WT'
2.457514 Gtype b'+1:lemma:type'
2.457514 Gtype b'+1:word:type'
2.445177 Supp b'lemma:Fe'
2.445177 Supp b'word:Fe'
2.387444 O b'lemma:rep2'
2.387444 O b'word:rep2'
2.380978 OD b'lemma:od600'
2.380978 OD b'word:OD600'
2.377956 Anti b'lemma:anti-rpos'
2.377956 Anti b'word:anti-RpoS'
2.363736 O b'lemma:oxyr'
2.363736 O b'word:OxyR'
2.360999 Anti b'lemma:none'
2.360999 Anti b'word:none'
2.343495 Gtype b'word:wt'
2.342659 Supp b'lemma:dpd'
2.342659 Supp b'word:DPD'
2.334798 Gtype b'lemma:\xce\xb4ompr'
2.334798 Gtype b'word:\xce\x94ompR'
2.303303 O b'-1:lemma:0.3'
2.303303 O b'-1:word:0.3'
2.262158 O b'lemma:\xcf\x8332'
2.262158 O b'word:\xcf\x8332'
2.249986 O b'word:A'
2.245441 Vess b'lemma:flask'
2.245441 Vess b'-1:lemma:warm'
2.245441 Vess b'word:flask'
2.245441 Vess b'-1:word:warmed'
2.238883 O b'+1:lemma:od600'
2.238883 O b'+1:word:OD600'
2.225888 O b'postag:DT'
2.181011 O b'-1:lemma:0.3-0.35'
2.181011 O b'-1:word:0.3-0.35'
2.166240 O b'lemma:or'
2.166240 O b'word:or'
2.155012 Supp b'lemma:acetate'
2.155012 Supp b'word:acetate'
2.153135 OD b'lemma:od450'
2.153135 OD b'word:OD450'
2.153135 OD b'-1:word:At'
2.131868 Supp b'lemma:glucose'
2.131868 Supp b'word:glucose'
2.127183 Anti b'+1:lemma:antibody'
2.127183 Anti b'+1:word:antibody'
2.127102 O b'lemma:culture'
2.121306 Med b'+1:lemma:0.4'
2.121306 Med b'+1:word:0.4'
2.104976 Anti b'lemma:anti-myc'
2.104976 Anti b'word:anti-myc'
2.090073 Supp b'lemma:iptg'
2.090073 Supp b'word:IPTG'
2.088014 O b'lemma:chip-fnr'
2.088014 O b'word:chip-Fnr'
2.087065 Gtype b'lemma:nsrr'
2.087065 Gtype b'word:NsrR'
2.069607 O b'+1:postag::'
2.049162 Phase b'-1:word:growing'
2.041081 Gversion b'word:ChIP-Seq'
2.034077 O b'-1:word:fnr'
2.027233 Gtype b'+1:postag::'
2.026441 Gtype b'postag:JJ'
2.012468 O b'postag:VBN'
2.003087 O b'lemma:soxs'
2.003087 O b'word:SoxS'
2.003087 O b'lemma:soxr'
2.003087 O b'word:SoxR'
1.984406 O b'+1:lemma:o.d.'
1.984406 O b'+1:word:O.D.'
1.975363 OD b'+1:postag:JJ'
1.968960 Air b'-1:lemma:ChIP-Seq'
1.968960 Air b'-1:word:ChIP-Seq'
1.963497 Gtype b'lemma:pk4854'
1.963497 Gtype b'word:PK4854'
1.957953 Gtype b'word:cra'
1.957254 Air b'lemma:anerobically'
1.957254 Air b'word:anerobically'
1.954863 O b'+1:lemma:pq'
Top negative:
-0.090059 O b'-1:lemma:e.'
-0.092645 O b'+1:postag:-RRB-'
-0.095582 O b'-1:word:the'
-0.095914 O b'+1:lemma:minimal'
-0.095914 O b'+1:word:minimal'
-0.096813 Strain b'postag:NN'
-0.100844 O b'word:LB'
-0.102252 O b'lemma:anaerobic'
-0.106574 OD b'+1:postag:CC'
-0.107348 Air b'+1:postag:NN'
-0.107934 O b'-1:word:grown'
-0.108595 Supp b'-1:postag:VBG'
-0.108740 pH b'postag:NN'
-0.112315 O b'-1:lemma:ml'
-0.112801 O b'+1:lemma:rep1'
-0.112801 O b'+1:word:rep1'
-0.112908 O b'-1:lemma:od600'
-0.112908 O b'-1:word:OD600'
-0.115106 Air b'-1:postag:CC'
-0.115496 O b'lemma:co2'
-0.115496 O b'word:CO2'
-0.122244 O b'-1:lemma:the'
-0.124640 O b'-1:lemma:~'
-0.124640 O b'-1:word:~'
-0.127544 OD b'+1:lemma:and'
-0.127544 OD b'+1:word:and'
-0.129259 O b'-1:lemma:-lrb-'
-0.129259 O b'-1:word:-LRB-'
-0.133618 O b'+1:lemma:_'
-0.133618 O b'+1:word:_'
-0.135372 O b'+1:lemma:\xc2\xb0c'
-0.135372 O b'+1:word:\xc2\xb0C'
-0.136841 Technique b'isNumber'
-0.139019 O b'lemma:30'
-0.139019 O b'word:30'
-0.139199 Phase b'-1:postag:NN'
-0.149458 O b'+1:lemma:5'
-0.149458 O b'+1:word:5'
-0.151250 OD b'postag:JJ'
-0.152851 Supp b'+1:lemma:acetate'
-0.152851 Supp b'+1:word:acetate'
-0.156762 O b'+1:lemma:.'
-0.156762 O b'+1:postag:.'
-0.156762 O b'+1:word:.'
-0.158764 O b'-1:postag:-LRB-'
-0.161868 Gversion b'-1:postag:NN'
-0.163014 pH b'isLower'
-0.167779 O b'-1:lemma:30'
-0.167779 O b'-1:word:30'
-0.171168 O b'lemma:150'
-0.171168 O b'+1:lemma:mg/ml'
-0.171168 O b'word:150'
-0.171168 O b'+1:word:mg/mL'
-0.176143 O b'lemma:0.3'
-0.176143 O b'word:0.3'
-0.187819 O b'lemma:aerobically'
-0.187819 O b'word:aerobically'
-0.198962 O b'word:hours'
-0.212759 Med b'+1:postag:NNS'
-0.224619 Gtype b'-1:postag:SYM'
-0.228665 O b'lemma:fecl2'
-0.228665 O b'word:FeCl2'
-0.233718 O b'+1:lemma:or'
-0.233718 O b'+1:word:or'
-0.234368 O b'lemma:e.'
-0.236980 O b'lemma:dissolve'
-0.236980 O b'word:dissolved'
-0.241256 Supp b'+1:lemma:rifampicin'
-0.241256 Supp b'+1:word:rifampicin'
-0.241793 O b'-1:word:ml'
-0.242844 O b'-1:lemma:mid-log'
-0.242844 O b'-1:word:mid-log'
-0.244892 O b'-1:lemma:o2'
-0.244892 O b'-1:word:O2'
-0.250659 O b'-1:lemma:0.2'
-0.250659 O b'-1:word:0.2'
-0.257587 Air b'-1:postag:JJ'
-0.275537 O b'+1:postag:IN'
-0.276339 Agit b'isUpper'
-0.288029 O b'lemma:minimal'
-0.288029 O b'word:minimal'
-0.288682 O b'lemma:0.2'
-0.288682 O b'word:0.2'
-0.295170 O b'+1:lemma:%'
-0.295170 O b'+1:word:%'
-0.312769 Supp b'+1:postag:IN'
-0.314136 O b'lemma:of'
-0.314136 O b'word:of'
-0.316019 O b'lemma:phase'
-0.316019 O b'word:phase'
-0.317543 O b'-1:lemma:rpob'
-0.317543 O b'-1:word:RpoB'
-0.352099 O b'lemma:0.1'
-0.352099 O b'word:0.1'
-0.354536 O b'-1:lemma:grow'
-0.355121 O b'+1:postag:NNS'
-0.360104 O b'lemma:dpd'
-0.360104 O b'word:DPD'
-0.361422 Med b'postag:CD'
-0.374440 Air b'+1:postag:JJ'
-0.374640 O b'+1:lemma:c'
-0.386040 O b'lemma:medium'
-0.386040 O b'word:medium'
-0.425432 OD b'+1:postag:NN'
-0.433655 Med b'+1:postag:NN'
-0.442754 Supp b'-1:postag:NNP'
-0.444075 O b'-1:postag:IN'
-0.462977 O b'-1:lemma:IP'
-0.462977 O b'-1:word:IP'
-0.473099 O b'lemma:od600'
-0.473099 O b'word:OD600'
-0.475947 Supp b'-1:lemma:%'
-0.475947 Supp b'-1:word:%'
-0.478194 Supp b'+1:postag:VBN'
-0.493813 O b'-1:lemma:dissolve'
-0.493813 O b'+1:lemma:methanol'
-0.493813 O b'-1:word:dissolved'
-0.493813 O b'+1:word:methanol'
-0.496860 Temp b'+1:lemma:to'
-0.496860 Temp b'+1:postag:TO'
-0.496860 Temp b'+1:word:to'
-0.499631 O b'word:WT'
-0.513610 Temp b'postag:NN'
-0.514977 O b'lemma:glucose'
-0.514977 O b'word:glucose'
-0.536212 OD b'lemma:-lrb-'
-0.536212 OD b'word:-LRB-'
-0.551562 O b'lemma:media'
-0.551562 O b'word:media'
-0.560747 O b'+1:lemma:fecl2'
-0.560747 O b'+1:word:FeCl2'
-0.568774 O b'-1:lemma:co2'
-0.568774 O b'-1:word:CO2'
-0.570589 O b'lemma:20'
-0.570589 O b'word:20'
-0.601473 O b'-1:lemma:37'
-0.601473 O b'-1:word:37'
-0.606741 O b'+1:word:ChIP-exo'
-0.613813 O b'+1:lemma:g/l'
-0.613813 O b'+1:word:g/L'
-0.619083 OD b'postag:-LRB-'
-0.649236 O b'+1:word:C'
-0.665832 O b'+1:lemma:supplement'
-0.665832 O b'+1:word:supplemented'
-0.674327 O b'lemma:37'
-0.674327 O b'word:37'
-0.686899 O b'lemma:2h'
-0.686899 O b'-1:lemma:additional'
-0.686899 O b'word:2h'
-0.686899 O b'-1:word:additional'
-0.702076 O b'+1:lemma:in'
-0.702076 O b'+1:word:in'
-0.720953 Med b'-1:postag:NN'
-0.734913 Med b'+1:postag:IN'
-0.738740 O b'postag:RB'
-0.780009 Supp b'-1:postag:NN'
-0.812687 Phase b'-1:postag:JJ'
-0.862547 O b'+1:lemma:at'
-0.862547 O b'+1:word:at'
-0.884705 O b'lemma:anaerobically'
-0.884705 O b'word:anaerobically'
-0.954289 O b'lemma:rifampicin'
-0.954289 O b'word:rifampicin'
-0.975364 O b'+1:lemma:hour'
-0.985559 O b'-1:lemma:nsrr'
-0.985559 O b'-1:word:NsrR'
-0.997260 O b'-1:postag::'
-1.064484 O b'+1:lemma:2'
-1.064484 O b'+1:word:2'
-1.067361 O b'+1:postag:VBG'
-1.084453 Temp b'isLower'
-1.090676 Technique b'isLower'
-1.096556 Air b'postag:NN'
-1.130890 O b'-1:postag:VBG'
-1.137066 O b'lemma:methanol'
-1.137066 O b'word:methanol'
-1.146647 Med b'-1:postag:IN'
-1.273126 Gtype b'isUpper'
-1.333154 OD b'isNumber'
-1.341950 Anti b'postag:NNP'
-1.346674 O b'lemma:wt'
-1.359316 O b'-1:lemma:2'
-1.359316 O b'-1:word:2'
-1.393623 O b'lemma:mid-log'
-1.393623 O b'word:mid-log'
-1.528613 Supp b'postag:CC'
-1.536721 O b'-1:lemma:ompr'
-1.544831 O b'+1:lemma:1'
-1.544831 O b'+1:word:1'
-1.748788 Gtype b'isLower'
-2.010239 O b'+1:word:hours'
-2.214812 Gversion b'isLower'
-2.235984 O b'-1:lemma:_'
-2.235984 O b'-1:word:_'
-2.367089 Supp b'postag:JJ'
-2.519281 O b'-1:lemma::'
-2.519281 O b'-1:word::'
-2.594531 O b'word:cells'
-3.006120 Gtype b'isNumber'
-3.055847 Phase b'postag:JJ'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.3568772328262357, 'c2': 0.03679897833962741}
best CV score:0.7912405713814187
model size: 0.06M
Flat F1: 0.7675992381773036
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.800 0.842 0.821 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.789 0.882 19
Air 0.780 0.742 0.760 62
Anti 0.800 0.444 0.571 9
Strain 0.000 0.000 0.000 1
Gtype 0.845 0.774 0.808 106
Substrain 0.000 0.000 0.000 1
Supp 0.806 0.640 0.713 136
Gversion 0.000 0.000 0.000 0
avg / total 0.842 0.723 0.768 480
Top likely transitions:
OD -> OD 5.955565
Agit -> Agit 5.919199
Temp -> Temp 5.457223
Med -> Med 5.142852
Anti -> Anti 5.096560
Air -> Air 4.785647
Gtype -> Gtype 4.265020
O -> O 4.167033
Gversion -> Gversion 4.096654
Supp -> Supp 4.095690
Phase -> Phase 4.087605
Technique -> Technique 3.540826
O -> Supp 2.079503
Gtype -> Supp 1.995901
Air -> O 1.832886
pH -> pH 1.823851
Substrain -> Gtype 1.407319
O -> Gtype 1.287017
O -> Technique 1.257508
O -> Anti 0.872529
Technique -> Air 0.856385
O -> Temp 0.849337
Med -> O 0.823339
OD -> Phase 0.567936
Supp -> O 0.535077
O -> Gversion 0.454745
Temp -> O 0.378011
O -> Med 0.340773
Phase -> O 0.256163
Gtype -> Air 0.217223
Gtype -> pH 0.173493
O -> Phase 0.079173
O -> Strain 0.031985
Supp -> Air -0.000004
Gtype -> Anti -0.020854
Gtype -> Gversion -0.026214
Technique -> Gtype -0.122709
OD -> O -0.164948
Technique -> pH -0.215348
Supp -> Med -0.427866
O -> Air -0.523868
Agit -> O -0.572132
Substrain -> O -0.707348
Gtype -> OD -0.819099
Med -> Supp -0.863239
Phase -> OD -0.994549
Top unlikely transitions:
OD -> OD 5.955565
Agit -> Agit 5.919199
Temp -> Temp 5.457223
Med -> Med 5.142852
Anti -> Anti 5.096560
Air -> Air 4.785647
Gtype -> Gtype 4.265020
O -> O 4.167033
Gversion -> Gversion 4.096654
Supp -> Supp 4.095690
Phase -> Phase 4.087605
Technique -> Technique 3.540826
O -> Supp 2.079503
Gtype -> Supp 1.995901
Air -> O 1.832886
pH -> pH 1.823851
Substrain -> Gtype 1.407319
O -> Gtype 1.287017
O -> Technique 1.257508
O -> Anti 0.872529
Technique -> Air 0.856385
O -> Temp 0.849337
Med -> O 0.823339
OD -> Phase 0.567936
Supp -> O 0.535077
O -> Gversion 0.454745
Temp -> O 0.378011
O -> Med 0.340773
Phase -> O 0.256163
Gtype -> Air 0.217223
Gtype -> pH 0.173493
O -> Phase 0.079173
O -> Strain 0.031985
Supp -> Air -0.000004
Gtype -> Anti -0.020854
Gtype -> Gversion -0.026214
Technique -> Gtype -0.122709
OD -> O -0.164948
Technique -> pH -0.215348
Supp -> Med -0.427866
O -> Air -0.523868
Agit -> O -0.572132
Substrain -> O -0.707348
Gtype -> OD -0.819099
Med -> Supp -0.863239
Phase -> OD -0.994549
Top positive:
7.311391 O b'lemma:_'
6.386213 O b'lemma:1'
5.942659 Air b'lemma:anaerobic'
5.902775 Supp b'lemma:Iron'
5.497006 Strain b'lemma:k-12'
5.443070 Air b'lemma:aerobic'
5.417956 Technique b'lemma:ChIP-exo'
5.360099 O b'lemma:2'
4.972296 Phase b'lemma:mid-log'
4.783538 O b'postag:IN'
4.776370 Supp b'lemma:nitrate'
4.762645 O b'lemma:rpob'
4.691195 Air b'-1:lemma:ChIP-Seq'
4.618875 O b'lemma:3'
4.601053 Substrain b'lemma:mg1655'
4.462226 Technique b'lemma:chipseq'
4.387311 Phase b'lemma:stationary'
4.222036 OD b'lemma:od600'
4.073562 Gtype b'+1:lemma:type'
4.057916 Supp b'lemma:pq'
3.985864 Supp b'lemma:nh4cl'
3.972087 Gtype b'lemma:\xce\xb4cra'
3.961883 Air b'lemma:Aerobic'
3.882824 O b'postag::'
3.851044 Gtype b'lemma:type'
3.817888 Gtype b'-1:lemma:\xe2\x88\x86'
3.749284 Gtype b'lemma:flag-tag'
3.749284 Gtype b'-1:lemma:c-terminal'
3.742652 Gtype b'lemma:wt'
3.740216 Med b'lemma:lb'
3.740189 Supp b'lemma:glucose'
3.732373 O b'lemma:rep1'
3.722079 O b'lemma:b'
3.685687 Gversion b'lemma:asm584v2'
3.675629 Gversion b'lemma:nc'
3.658421 Supp b'+1:lemma:\xc2\xb5m'
3.453987 O b'lemma:a'
3.428380 O b'lemma:rep2'
3.424503 Med b'lemma:LB'
3.414190 Gtype b'lemma:arca8myc'
3.403980 O b'-1:lemma:ChIP-exo'
3.303023 Med b'lemma:MOPS'
3.265948 Technique b'lemma:rna-seq'
3.251521 Technique b'lemma:ChIP-Seq'
3.210550 O b'lemma:\xcf\x8332'
3.209996 O b'lemma:Cra'
3.119550 O b'postag:VBN'
3.109382 Gtype b'lemma:delta-arca'
3.070896 O b'lemma:.'
3.070896 O b'postag:.'
3.047834 Technique b'lemma:chip-seq'
3.046544 Gtype b'lemma:\xe2\x88\x86'
3.018451 Supp b'lemma:Fe'
3.007680 Supp b'lemma:acetate'
2.972749 Air b'postag:RB'
2.971413 O b'-1:lemma:tag'
2.959092 Med b'+1:lemma:0.4'
2.947878 O b'lemma:rep3'
2.936895 Gtype b'lemma:fnr8myc'
2.934222 Anti b'+1:lemma:antibody'
2.898737 Supp b'lemma:no3'
2.896406 O b'lemma:Custom'
2.856337 O b'postag:CC'
2.850328 Technique b'-1:lemma:IP'
2.848169 Temp b'lemma:\xc2\xb0c'
2.841904 Supp b'lemma:fructose'
2.805619 Technique b'lemma:rnaseq'
2.779984 Gtype b'lemma:nsrr'
2.746209 O b'+1:lemma:od600'
2.719832 Supp b'lemma:rifampicin'
2.673293 O b'-1:lemma:Aerobic'
2.634726 Vess b'lemma:flask'
2.634726 Vess b'-1:lemma:warm'
2.632998 Supp b'+1:lemma:1'
2.627950 pH b'lemma:ph5'
2.627950 pH b'+1:lemma:.5'
2.584412 Gtype b'lemma:\xce\xb4fur'
2.580319 OD b'lemma:od450'
2.506717 Gtype b'+1:lemma:with'
2.487258 Supp b'lemma:dpd'
2.454806 Supp b'+1:lemma:2'
2.450355 Gversion b'-1:lemma:nc'
2.405914 O b'lemma:-'
2.403636 Supp b'lemma:arginine'
2.402149 O b'-1:lemma:type'
2.392360 Gtype b'lemma:delta-fnr'
2.374469 O b'-1:lemma:0.3-0.35'
2.367275 Gversion b'lemma:000913'
2.362681 O b'lemma:CEL'
2.349730 Gversion b'lemma:u00096'
2.349730 Gversion b'+1:lemma:.2'
2.344881 Gtype b'+1:lemma:ph5'
2.330556 Temp b'-1:lemma:sample'
2.315441 Med b'lemma:m63'
2.315022 O b'postag:DT'
2.300074 Gtype b'+1:lemma:pq'
2.267250 Gtype b'-1:lemma:rpob'
2.265036 Anti b'lemma:none'
2.258989 O b'-1:lemma:glucose'
2.231273 Med b'+1:lemma:minimal'
2.224003 O b'+1:postag:RB'
2.220750 Med b'lemma:media'
2.206396 Gtype b'lemma:wild-type'
2.185276 Gtype b'+1:lemma:flagtag'
2.172170 Temp b'-1:lemma:\xcf\x8332'
2.170608 Gversion b'lemma:.2'
2.170608 Gversion b'-1:lemma:u00096'
2.168316 O b'lemma:chip'
2.140388 pH b'lemma:.5'
2.140388 pH b'-1:lemma:ph5'
2.092729 Technique b'-1:lemma:chip-exo'
2.092406 O b'postag:VBG'
2.091643 Supp b'+1:lemma:_'
2.084452 Gtype b'-1:lemma:ptac'
2.084202 Strain b'+1:lemma:substr'
2.037782 O b'+1:postag:NNP'
2.036707 O b'lemma:with'
2.020481 Anti b'lemma:seqa'
2.017889 O b'lemma:affyexp'
2.016765 O b'+1:lemma:pq'
2.014069 Supp b'-1:lemma:\xc2\xb5m'
2.007497 OD b'+1:lemma:stationary'
2.005510 O b'lemma:s'
1.992269 O b'-1:lemma:l1'
1.979839 Supp b'-1:lemma:with'
1.950746 Med b'+1:lemma:2.0'
1.943075 Supp b'lemma:nacl'
1.939615 O b'lemma:or'
1.934384 O b'-1:lemma:\xc2\xb0c'
1.924238 Gversion b'lemma:chip-seq'
1.912397 Air b'-1:lemma:-'
1.907041 O b'-1:lemma:anaerobic'
1.897746 Supp b'lemma:20'
1.889218 Gtype b'+1:lemma:_'
1.887958 Phase b'-1:lemma:mid-log'
1.881451 Technique b'+1:lemma:chip-exo'
1.878291 Temp b'-1:lemma:43'
1.855251 pH b'+1:postag:CD'
1.845211 Gversion b'lemma:_'
1.834481 Gtype b'lemma:\xce\xb4ompr'
1.833194 O b'-1:lemma:0.3'
1.819503 O b'postag:VBD'
1.794552 Supp b'-1:lemma:Cra'
1.789484 Temp b'lemma:43'
1.773482 Supp b'lemma:iptg'
1.756704 O b'lemma:culture'
1.754791 Temp b'+1:lemma:\xc2\xb0c'
1.743371 Technique b'-1:lemma:1'
1.741538 Temp b'lemma:37'
1.722498 Air b'lemma:anaerobically'
1.719157 O b'-1:lemma:lb'
1.715507 Air b'-1:lemma:co2'
1.702741 Med b'-1:lemma:glucose'
1.692405 Med b'lemma:L'
1.692405 Med b'+1:lemma:broth'
1.691874 Med b'+1:lemma:supplement'
1.691307 OD b'-1:lemma:~'
1.683838 Supp b'lemma:Leu'
1.682972 O b'lemma:genotype/variation'
1.676442 Gtype b'lemma:ptac'
1.663265 O b'lemma:oxyr'
1.660953 Anti b'lemma:anti-rpos'
1.630672 OD b'lemma:0.3'
1.621148 O b'lemma:-rrb-'
1.617178 Anti b'lemma:anti-myc'
1.604063 O b'-1:lemma:stpa'
1.586655 Med b'lemma:glucose'
1.585743 Gversion b'+1:lemma:000913'
1.579174 O b'postag:SYM'
1.578068 Gtype b'-1:lemma:nsrr'
1.574137 Supp b'-1:lemma:+'
1.567060 Gtype b'+1:postag::'
1.563299 Gversion b'postag:CD'
1.544619 Temp b'-1:lemma:37'
1.538602 Med b'+1:lemma:g/l'
1.528286 O b'lemma:to'
1.528286 O b'postag:TO'
1.523324 Gtype b'lemma:\xce\xb4soxs'
1.518247 Technique b'postag:NNP'
1.515066 O b'lemma:Lrp'
1.503810 Supp b'+1:lemma:Deficient'
1.474618 Med b'postag:NNP'
1.470896 O b'lemma:condition'
1.470694 O b'postag:NNS'
1.466882 Vess b'-1:postag:VBN'
1.460777 Substrain b'+1:lemma:phtpg'
1.454367 O b'lemma:Fur'
1.445446 Gtype b'lemma:pk4854'
1.444799 O b'lemma:chip-arca'
1.433832 Air b'-1:postag:CD'
1.433106 Supp b'lemma:of'
1.427368 Supp b'lemma:0.2'
1.416476 Gtype b'postag:-RRB-'
1.416028 Med b'+1:lemma:+'
1.405123 Gtype b'+1:lemma:aerobic'
1.403649 O b'+1:lemma:chip-seq'
1.392465 Vess b'+1:lemma:at'
1.387929 Air b'+1:lemma:%'
1.386557 Air b'lemma:Anaerobic'
1.379418 Air b'lemma:%'
Top negative:
0.046237 Technique b'-1:postag:-LRB-'
0.044591 O b'lemma:total'
0.042487 OD b'-1:postag:JJ'
0.041254 Agit b'+1:lemma:at'
0.040829 Air b'-1:lemma:o2'
0.039691 O b'+1:postag:SYM'
0.037763 Air b'-1:lemma:95'
0.037597 Med b'-1:lemma:g/l'
0.034684 Med b'-1:postag::'
0.034326 OD b'lemma:and'
0.031598 Supp b'-1:lemma:ompr'
0.024936 Technique b'postag:NN'
0.024683 O b'lemma:co2'
0.024521 O b'-1:lemma:k-12'
0.023660 O b'lemma:express'
0.023660 O b'+1:lemma:nsrr'
0.021537 OD b'-1:postag:-LRB-'
0.020167 O b'-1:lemma:respiratory'
0.019242 Technique b'-1:postag:NN'
0.017406 O b'+1:postag:-LRB-'
0.015124 O b'lemma:contain'
0.013912 Agit b'-1:postag:DT'
0.013779 O b'+1:lemma:with'
0.011889 Supp b'-1:postag:NN'
0.010468 O b'-1:lemma:no3'
0.007499 O b'postag:VBZ'
0.006399 Temp b'-1:postag:NNS'
0.006118 O b'lemma:%'
0.004379 Med b'-1:lemma:2'
0.003940 OD b'postag:CC'
0.003905 Gtype b'lemma::'
0.003701 O b'-1:lemma:with'
0.003698 Air b'postag:NNP'
0.003581 O b'+1:lemma:20'
0.003278 O b'+1:lemma:wt'
0.003056 Gtype b'-1:postag:NN'
0.003014 O b'-1:postag:VBD'
0.002667 Supp b'-1:lemma:contain'
0.002596 O b'lemma:respiratory'
0.001697 Agit b'postag:IN'
0.001336 O b'-1:lemma:genotype'
0.001218 OD b'+1:postag:-RRB-'
0.001198 O b'lemma:mm'
0.001116 OD b'postag:CD'
0.000945 Med b'lemma:g/l'
0.000825 O b'+1:lemma:total'
0.000744 Air b'+1:lemma:and'
0.000698 Gtype b'-1:lemma:lacz'
0.000535 O b'+1:lemma:anaerobically'
0.000513 O b'-1:lemma:and'
0.000496 O b'+1:lemma:mm'
0.000435 O b'-1:lemma:fructose'
0.000393 O b'lemma:acetate'
0.000297 Gtype b'lemma:wild'
0.000283 Temp b'+1:lemma:.'
0.000283 Temp b'+1:postag:.'
0.000099 Phase b'postag:RB'
0.000088 Supp b'lemma:1mm'
0.000079 O b'+1:lemma:use'
0.000050 Supp b'+1:postag:JJ'
0.000036 Supp b'-1:lemma:1g/l'
0.000026 Supp b'lemma:paraquat'
0.000026 O b'-1:lemma:l2'
0.000025 OD b'lemma:\xce\xb4soxr'
0.000007 pH b'postag:CD'
0.000007 Supp b'lemma:um'
0.000006 Gtype b'lemma:small'
-0.000000 O b'-1:lemma:cra'
-0.000009 O b'+1:lemma:dissolve'
-0.000017 O b'-1:lemma:the'
-0.000043 Supp b'lemma:and'
-0.000046 O b'lemma:\xce\xb4fur'
-0.000085 O b'-1:lemma:rifampicin'
-0.000146 O b'-1:lemma:iptg'
-0.000260 OD b'+1:postag:NNS'
-0.000627 O b'-1:lemma:g/l'
-0.000742 OD b'postag:JJ'
-0.001488 O b'lemma:m63'
-0.003058 Air b'postag:CD'
-0.003448 O b'+1:lemma:phase'
-0.004608 Agit b'postag:NN'
-0.004847 O b'-1:lemma:,'
-0.004847 O b'-1:postag:,'
-0.005037 O b'-1:lemma:ml'
-0.007684 O b'+1:lemma:5'
-0.008395 Air b'+1:postag:-RRB-'
-0.008451 Air b'+1:lemma:-lrb-'
-0.017107 Med b'postag:CD'
-0.017612 Supp b'postag:CD'
-0.018284 O b'+1:lemma:c'
-0.018326 Air b'+1:postag:NN'
-0.018494 O b'+1:lemma:300'
-0.020172 O b'+1:lemma:arginine'
-0.021074 O b'+1:lemma:until'
-0.022065 O b'-1:lemma:n2'
-0.022176 Air b'+1:lemma:-rrb-'
-0.036363 Gtype b'postag:CD'
-0.041102 O b'+1:lemma:rep1'
-0.042847 O b'-1:lemma:e.'
-0.044979 Air b'-1:lemma:-lrb-'
-0.046714 Air b'-1:postag:CC'
-0.058789 O b'-1:lemma:1'
-0.063701 O b'lemma:k-12'
-0.066551 Supp b'+1:lemma:-rrb-'
-0.070646 Anti b'+1:lemma:anti-fur'
-0.073806 OD b'+1:postag:CD'
-0.084658 OD b'+1:postag:-LRB-'
-0.084874 O b'lemma:150'
-0.084874 O b'+1:lemma:mg/ml'
-0.089700 O b'-1:postag:VBN'
-0.098890 O b'lemma:lb'
-0.104646 Technique b'-1:lemma::'
-0.109346 Gtype b'-1:postag:CD'
-0.117060 Med b'-1:postag:NN'
-0.137397 O b'lemma:\xe2\x88\x86'
-0.139038 Med b'+1:postag:IN'
-0.139665 Supp b'postag:CC'
-0.145456 O b'-1:lemma:0.2'
-0.166221 Anti b'+1:postag:JJ'
-0.168662 O b'-1:lemma:30'
-0.170969 Gtype b'+1:lemma:-lrb-'
-0.185496 O b'+1:postag:NNS'
-0.187775 O b'+1:lemma:-rrb-'
-0.189256 O b'lemma:phase'
-0.197532 O b'-1:lemma:~'
-0.198007 Supp b'+1:lemma:rifampicin'
-0.204204 O b'+1:lemma:.'
-0.204204 O b'+1:postag:.'
-0.216763 Supp b'+1:postag:-RRB-'
-0.218250 O b'+1:lemma:%'
-0.224866 O b'lemma:dissolve'
-0.237242 O b'-1:postag:IN'
-0.238328 O b'-1:lemma:of'
-0.240558 O b'+1:lemma:hour'
-0.240999 O b'-1:lemma:-lrb-'
-0.256297 Temp b'+1:lemma:to'
-0.256297 Temp b'+1:postag:TO'
-0.256467 O b'+1:lemma:0.3'
-0.259261 Temp b'postag:JJ'
-0.264304 O b'-1:lemma:from'
-0.278399 O b'lemma:20'
-0.278740 Phase b'-1:lemma:at'
-0.285638 O b'lemma:media'
-0.332297 O b'-1:postag:-LRB-'
-0.344037 O b'-1:lemma:mid-log'
-0.360399 Med b'+1:postag:NN'
-0.369081 O b'+1:postag:IN'
-0.394929 pH b'postag:NN'
-0.422222 O b'lemma:anaerobically'
-0.424296 O b'lemma:fecl2'
-0.437175 O b'+1:postag:-RRB-'
-0.454022 O b'lemma:0.3'
-0.489502 O b'+1:lemma:fecl2'
-0.515212 O b'-1:lemma:rpob'
-0.523695 O b'-1:lemma:ompr'
-0.548908 O b'-1:lemma:od600'
-0.555804 O b'+1:postag:VBG'
-0.560571 O b'-1:lemma:sample'
-0.564990 O b'-1:lemma:37'
-0.571228 O b'-1:lemma:grow'
-0.575388 OD b'+1:postag:NN'
-0.582274 O b'lemma:od600'
-0.590024 Technique b'-1:postag::'
-0.607317 OD b'lemma:-lrb-'
-0.626089 Air b'-1:postag:JJ'
-0.675603 O b'lemma:2h'
-0.675603 O b'-1:lemma:additional'
-0.678009 Supp b'+1:lemma:acetate'
-0.680017 O b'+1:lemma:cell'
-0.707984 O b'lemma:0.1'
-0.736935 O b'lemma:37'
-0.745442 O b'+1:lemma:+'
-0.767826 O b'lemma:0.2'
-0.773161 Temp b'postag:NN'
-0.851338 O b'lemma:wt'
-0.866767 O b'-1:lemma:dissolve'
-0.866767 O b'+1:lemma:methanol'
-0.888840 O b'+1:lemma:g/l'
-0.912059 O b'lemma:mid-log'
-0.950858 O b'-1:postag::'
-0.973355 Anti b'postag:NNP'
-0.986952 O b'lemma:of'
-1.090926 O b'lemma:methanol'
-1.112071 O b'+1:lemma:supplement'
-1.135645 O b'lemma:rifampicin'
-1.140338 O b'-1:postag:VBG'
-1.194026 O b'+1:lemma:at'
-1.228205 O b'-1:lemma:co2'
-1.238990 O b'-1:lemma:nsrr'
-1.291964 OD b'postag:-LRB-'
-1.351756 O b'-1:lemma:IP'
-1.411430 Air b'+1:postag:JJ'
-1.429559 O b'+1:lemma:in'
-1.505998 Supp b'postag:JJ'
-1.647279 Air b'postag:NN'
-1.998332 O b'-1:lemma:2'
-2.129948 O b'+1:lemma:2'
-2.202486 O b'+1:lemma:1'
-3.512875 O b'-1:lemma::'
-3.774844 O b'-1:lemma:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.24365115413317517, 'c2': 0.017603116029939036}
best CV score:0.797058241278945
best params:{'c1': 0.18162961741547431, 'c2': 0.010173319055706773}
best CV score:0.8000535163011767
model size: 0.06M
Flat F1: 0.7778441635784862
Flat F1: 0.7788313742200469
precision recall f1-score support
OD 1.000 0.405 0.577 37
......@@ -15,512 +15,524 @@ Flat F1: 0.7778441635784862
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.780 0.742 0.760 62
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Anti 0.571 0.444 0.500 9
Strain 1.000 1.000 1.000 1
Gtype 0.863 0.774 0.816 106
Substrain 0.000 0.000 0.000 1
Supp 0.818 0.662 0.732 136
Supp 0.820 0.669 0.737 136
Gversion 0.000 0.000 0.000 0
avg / total 0.847 0.735 0.778 480
avg / total 0.844 0.740 0.779 480
Top likely transitions:
OD -> OD 6.460512
Agit -> Agit 6.341871
Temp -> Temp 5.624129
Med -> Med 5.402282
Anti -> Anti 5.214940
Air -> Air 4.858980
Phase -> Phase 4.544403
Gtype -> Gtype 4.483666
Supp -> Supp 4.372876
Gversion -> Gversion 4.358204
O -> O 4.356881
Technique -> Technique 3.828561
O -> Supp 2.070080
Gtype -> Supp 1.938994
pH -> pH 1.828748
Air -> O 1.699192
O -> Technique 1.307357
Substrain -> Gtype 1.254891
O -> Gtype 1.237193
O -> Temp 0.952632
Med -> O 0.819857
OD -> Phase 0.738941
Technique -> Air 0.735321
O -> Anti 0.520896
Supp -> O 0.493996
Temp -> O 0.435644
O -> Gversion 0.368943
Phase -> O 0.362864
Gtype -> pH 0.340162
O -> Med 0.294591
Gtype -> Air 0.108303
O -> Strain 0.008465
Gtype -> O -0.094763
Gtype -> Anti -0.194733
OD -> O -0.218649
Technique -> pH -0.317427
Agit -> O -0.543505
Supp -> Med -0.600692
Gtype -> OD -0.628749
O -> Air -0.839621
Substrain -> O -0.911959
Med -> Supp -1.122521
Phase -> OD -1.131519
Agit -> Agit 6.428280
OD -> OD 6.391198
Temp -> Temp 5.649607
Med -> Med 5.539114
Anti -> Anti 5.303445
Air -> Air 5.166643
O -> O 4.665819
Gversion -> Gversion 4.506373
Gtype -> Gtype 4.407445
Phase -> Phase 4.396047
Supp -> Supp 4.016861
Technique -> Technique 3.916964
O -> Supp 1.874908
pH -> pH 1.860916
Air -> O 1.770442
Gtype -> Supp 1.543348
O -> Technique 1.425814
O -> Gtype 1.309373
Substrain -> Gtype 1.304530
Technique -> Air 0.870147
O -> Temp 0.799278
O -> Anti 0.706193
Med -> O 0.658266
Temp -> O 0.368124
O -> Gversion 0.329037
OD -> Phase 0.304771
O -> Med 0.286180
Gtype -> pH 0.234567
Phase -> O 0.219735
Supp -> O 0.186801
O -> Strain 0.165838
O -> Phase 0.049593
Gtype -> Air 0.047789
O -> OD 0.017713
Technique -> O -0.003305
OD -> Med -0.005961
Supp -> Air -0.145259
Gtype -> Med -0.329989
OD -> O -0.341272
Gtype -> O -0.347754
Technique -> OD -0.359361
Agit -> O -0.510570
Gtype -> Anti -0.695655
Supp -> Med -0.748551
Gtype -> OD -0.794417
O -> Air -0.800635
Substrain -> O -1.117563
Phase -> OD -1.392334
Med -> Supp -1.659724
Top unlikely transitions:
OD -> OD 6.460512
Agit -> Agit 6.341871
Temp -> Temp 5.624129
Med -> Med 5.402282
Anti -> Anti 5.214940
Air -> Air 4.858980
Phase -> Phase 4.544403
Gtype -> Gtype 4.483666
Supp -> Supp 4.372876
Gversion -> Gversion 4.358204
O -> O 4.356881
Technique -> Technique 3.828561
O -> Supp 2.070080
Gtype -> Supp 1.938994
pH -> pH 1.828748
Air -> O 1.699192
O -> Technique 1.307357
Substrain -> Gtype 1.254891
O -> Gtype 1.237193
O -> Temp 0.952632
Med -> O 0.819857
OD -> Phase 0.738941
Technique -> Air 0.735321
O -> Anti 0.520896
Supp -> O 0.493996
Temp -> O 0.435644
O -> Gversion 0.368943
Phase -> O 0.362864
Gtype -> pH 0.340162
O -> Med 0.294591
Gtype -> Air 0.108303
O -> Strain 0.008465
Gtype -> O -0.094763
Gtype -> Anti -0.194733
OD -> O -0.218649
Technique -> pH -0.317427
Agit -> O -0.543505
Supp -> Med -0.600692
Gtype -> OD -0.628749
O -> Air -0.839621
Substrain -> O -0.911959
Med -> Supp -1.122521
Phase -> OD -1.131519
Agit -> Agit 6.428280
OD -> OD 6.391198
Temp -> Temp 5.649607
Med -> Med 5.539114
Anti -> Anti 5.303445
Air -> Air 5.166643
O -> O 4.665819
Gversion -> Gversion 4.506373
Gtype -> Gtype 4.407445
Phase -> Phase 4.396047
Supp -> Supp 4.016861
Technique -> Technique 3.916964
O -> Supp 1.874908
pH -> pH 1.860916
Air -> O 1.770442
Gtype -> Supp 1.543348
O -> Technique 1.425814
O -> Gtype 1.309373
Substrain -> Gtype 1.304530
Technique -> Air 0.870147
O -> Temp 0.799278
O -> Anti 0.706193
Med -> O 0.658266
Temp -> O 0.368124
O -> Gversion 0.329037
OD -> Phase 0.304771
O -> Med 0.286180
Gtype -> pH 0.234567
Phase -> O 0.219735
Supp -> O 0.186801
O -> Strain 0.165838
O -> Phase 0.049593
Gtype -> Air 0.047789
O -> OD 0.017713
Technique -> O -0.003305
OD -> Med -0.005961
Supp -> Air -0.145259
Gtype -> Med -0.329989
OD -> O -0.341272
Gtype -> O -0.347754
Technique -> OD -0.359361
Agit -> O -0.510570
Gtype -> Anti -0.695655
Supp -> Med -0.748551
Gtype -> OD -0.794417
O -> Air -0.800635
Substrain -> O -1.117563
Phase -> OD -1.392334
Med -> Supp -1.659724
Top positive:
7.945473 O b'lemma:_'
7.412165 Supp b'lemma:Iron'
6.926609 Air b'lemma:anaerobic'
6.922674 O b'lemma:1'
6.590205 Air b'lemma:aerobic'
6.223986 Strain b'lemma:k-12'
6.187011 Technique b'lemma:ChIP-exo'
6.130654 Phase b'lemma:stationary'
5.864907 Supp b'lemma:nitrate'
5.653173 O b'lemma:2'
5.610923 O b'lemma:rpob'
5.610415 Air b'-1:lemma:ChIP-Seq'
5.397732 Phase b'lemma:mid-log'
5.255269 O b'lemma:3'
5.206599 Technique b'lemma:chipseq'
4.960561 Substrain b'lemma:mg1655'
4.914901 O b'postag:IN'
4.746312 Supp b'lemma:pq'
4.579937 Gtype b'lemma:\xce\xb4cra'
4.520187 Gtype b'lemma:type'
4.511014 OD b'lemma:od600'
4.469574 Gtype b'lemma:flag-tag'
4.469574 Gtype b'-1:lemma:c-terminal'
4.462810 O b'lemma:rep1'
4.392739 O b'postag::'
4.375670 Gversion b'lemma:asm584v2'
4.369737 O b'lemma:Custom'
4.356443 O b'lemma:b'
4.303923 Technique b'lemma:ChIP-Seq'
4.302917 Med b'lemma:MOPS'
4.296205 Supp b'lemma:nh4cl'
4.281883 Gtype b'-1:lemma:\xe2\x88\x86'
4.279879 Gtype b'+1:lemma:type'
4.270631 O b'lemma:rep2'
4.239368 Air b'lemma:Aerobic'
4.132080 Gversion b'lemma:nc'
4.117043 Med b'lemma:lb'
4.108014 Supp b'+1:lemma:\xc2\xb5m'
4.076646 O b'lemma:rep3'
4.043095 Gtype b'lemma:arca8myc'
4.041495 Supp b'lemma:glucose'
4.033775 O b'lemma:a'
4.027421 O b'-1:lemma:tag'
4.027011 Med b'lemma:LB'
4.007935 O b'lemma:Cra'
3.910498 Gtype b'lemma:wt'
3.905564 O b'-1:lemma:ChIP-exo'
3.870678 O b'lemma:\xcf\x8332'
3.727782 Supp b'lemma:acetate'
3.697104 Gtype b'lemma:delta-arca'
3.647724 Technique b'lemma:rna-seq'
3.633897 Supp b'lemma:Fe'
3.575150 Gtype b'lemma:fnr8myc'
3.536159 OD b'lemma:od450'
3.488627 Supp b'lemma:rifampicin'
3.426221 O b'lemma:.'
3.426221 O b'postag:.'
3.421248 Technique b'lemma:chip-seq'
3.389912 Air b'postag:RB'
3.367471 Med b'+1:lemma:0.4'
3.358386 Gtype b'lemma:\xe2\x88\x86'
3.341657 Supp b'lemma:dpd'
3.311375 Supp b'lemma:no3'
3.301666 Gtype b'lemma:nsrr'
3.263607 OD b'+1:lemma:stationary'
3.256783 O b'-1:lemma:Aerobic'
3.217842 Anti b'lemma:none'
3.181572 Gversion b'-1:lemma:nc'
3.100116 Technique b'lemma:rnaseq'
3.072172 Gtype b'lemma:\xce\xb4fur'
3.058843 O b'postag:VBN'
3.028102 Anti b'+1:lemma:antibody'
3.018055 Supp b'lemma:arginine'
3.012119 Supp b'+1:lemma:1'
3.009503 Gtype b'lemma:delta-fnr'
2.984566 O b'lemma:CEL'
2.976222 O b'+1:lemma:od600'
2.972362 Supp b'lemma:fructose'
2.971825 Vess b'lemma:flask'
2.971825 Vess b'-1:lemma:warm'
2.946262 Technique b'-1:lemma:IP'
2.917769 Temp b'-1:lemma:sample'
2.914128 Med b'+1:lemma:minimal'
2.847635 Temp b'lemma:\xc2\xb0c'
2.845956 O b'-1:lemma:type'
2.837114 pH b'lemma:ph5'
2.837114 pH b'+1:lemma:.5'
2.822859 Supp b'+1:lemma:2'
2.819530 O b'postag:CC'
2.802486 Gtype b'+1:lemma:with'
2.796286 Anti b'lemma:seqa'
2.757551 Gtype b'+1:lemma:pq'
2.752041 O b'lemma:chip'
2.720379 O b'lemma:-'
2.697742 Gversion b'lemma:u00096'
2.697742 Gversion b'+1:lemma:.2'
2.686468 Technique b'+1:lemma:chip-exo'
2.652892 O b'-1:lemma:0.3-0.35'
2.634884 O b'-1:lemma:glucose'
2.605565 Gversion b'lemma:chip-seq'
2.589331 Strain b'+1:lemma:substr'
2.586612 O b'+1:postag:RB'
2.568676 O b'postag:DT'
2.560900 Temp b'-1:lemma:\xcf\x8332'
2.543878 O b'lemma:with'
2.514778 Med b'lemma:m63'
2.497949 Anti b'lemma:anti-myc'
2.469343 pH b'lemma:.5'
2.469343 pH b'-1:lemma:ph5'
2.464961 Gversion b'lemma:000913'
2.461605 Gtype b'-1:lemma:rpob'
2.454623 O b'lemma:s'
2.438821 O b'+1:postag:NNP'
2.438655 Gversion b'lemma:.2'
2.438655 Gversion b'-1:lemma:u00096'
2.427395 Technique b'-1:lemma:chip-exo'
2.415443 Anti b'lemma:anti-rpos'
2.411875 Temp b'-1:lemma:43'
2.410922 Gtype b'-1:lemma:ptac'
2.405223 Gtype b'lemma:\xce\xb4ompr'
2.401826 O b'-1:lemma:anaerobic'
2.390761 O b'lemma:or'
2.388354 O b'-1:lemma:lb'
2.381109 Gtype b'+1:lemma:flagtag'
2.347230 Med b'+1:lemma:2.0'
2.324166 Med b'lemma:media'
2.310748 O b'-1:lemma:0.3'
2.278494 Supp b'-1:lemma:Cra'
2.263509 O b'+1:lemma:pq'
2.238545 Supp b'+1:lemma:_'
2.229756 O b'-1:lemma:l1'
2.226389 Air b'-1:lemma:co2'
2.200525 Gtype b'+1:lemma:aerobic'
2.173774 Supp b'lemma:nacl'
2.171575 Substrain b'+1:lemma:phtpg'
2.149631 Supp b'lemma:20'
2.120754 Gtype b'lemma:wild-type'
2.119820 Supp b'-1:lemma:\xc2\xb5m'
2.113883 O b'-1:lemma:\xc2\xb0c'
2.105763 Supp b'-1:lemma:+'
2.101125 O b'lemma:oxyr'
2.092553 Gtype b'lemma:\xce\xb4soxs'
2.090291 Air b'-1:lemma:-'
2.081430 Supp b'lemma:Leu'
2.062775 O b'postag:VBG'
2.055064 O b'-1:lemma:stpa'
2.046935 O b'lemma:condition'
2.038964 Temp b'lemma:43'
2.033948 Supp b'lemma:iptg'
2.023886 pH b'+1:postag:CD'
2.022782 Gtype b'+1:lemma:ph5'
2.013337 Temp b'-1:lemma:37'
1.955826 Med b'lemma:L'
1.955826 Med b'+1:lemma:broth'
1.954859 Temp b'lemma:37'
1.927649 O b'+1:lemma:chip-seq'
1.919892 Supp b'-1:lemma:with'
1.915338 O b'lemma:affyexp'
1.911245 Gtype b'lemma:pk4854'
1.909261 Phase b'-1:lemma:mid-log'
1.895692 Temp b'+1:lemma:\xc2\xb0c'
1.886863 O b'lemma:genotype/variation'
1.872821 OD b'-1:lemma:~'
1.872507 OD b'lemma:0.3'
1.858566 Med b'+1:lemma:supplement'
1.848644 Gtype b'lemma:ptac'
1.844359 O b'lemma:Lrp'
1.841048 Med b'+1:lemma:+'
1.831366 O b'lemma:culture'
1.830571 Gtype b'-1:postag:VBG'
1.825208 O b'lemma:-rrb-'
1.822383 Gtype b'lemma:deltaseqa'
1.822383 Gtype b'-1:lemma:old'
1.820507 Gtype b'-1:lemma:nsrr'
1.819979 Gtype b'+1:lemma:_'
1.784801 Med b'+1:lemma:g/l'
1.781733 Technique b'+1:lemma:rna-seq'
1.778548 Supp b'+1:lemma:Deficient'
1.771039 Gversion b'postag:CD'
1.755561 O b'lemma:chip-arca'
1.740739 Supp b'lemma:methanol'
1.728483 O b'lemma:ompr'
1.717002 Med b'-1:lemma:ml'
1.696842 OD b'lemma:phase'
1.693821 Supp b'lemma:Adenine'
1.677174 Air b'-1:postag::'
1.675361 Phase b'-1:lemma:until'
1.672716 Air b'-1:postag:CD'
1.672711 Med b'lemma:broth'
1.672711 Med b'-1:lemma:L'
1.672565 Technique b'-1:lemma:input'
1.666211 Technique b'-1:lemma:_'
1.663572 Air b'lemma:Anaerobic'
1.657183 Gtype b'-1:lemma:_'
1.650921 O b'lemma:Fur'
1.650554 Gtype b'-1:postag:VBP'
1.647569 Med b'-1:lemma:glucose'
1.646454 Gtype b'lemma:WT'
1.642228 Air b'lemma:anaerobically'
1.638505 Supp b'+1:lemma:hour'
8.779498 Supp b'lemma:Iron'
8.304502 O b'lemma:_'
7.618690 Phase b'lemma:stationary'
7.484170 Air b'lemma:anaerobic'
7.354518 O b'lemma:1'
7.067189 Air b'lemma:aerobic'
6.669483 Phase b'lemma:mid-log'
6.618228 Strain b'lemma:k-12'
6.546745 Technique b'lemma:ChIP-exo'
6.382709 Supp b'lemma:nitrate'
6.166994 O b'lemma:rpob'
5.942129 Technique b'lemma:chipseq'
5.857472 Med b'lemma:MOPS'
5.774642 Air b'-1:lemma:ChIP-Seq'
5.737667 Substrain b'lemma:mg1655'
5.732281 O b'lemma:2'
5.455707 O b'lemma:3'
5.364542 Supp b'lemma:pq'
5.264936 Gtype b'lemma:\xce\xb4cra'
5.213694 Gversion b'lemma:asm584v2'
5.194289 O b'-1:lemma:tag'
5.063868 O b'lemma:\xcf\x8332'
5.027668 O b'lemma:Custom'
4.891622 OD b'lemma:od600'
4.882911 O b'lemma:rep1'
4.854545 Gtype b'-1:lemma:\xe2\x88\x86'
4.823744 Med b'lemma:LB'
4.814164 Gtype b'+1:lemma:type'
4.802778 Gtype b'lemma:flag-tag'
4.802778 Gtype b'-1:lemma:c-terminal'
4.765392 O b'postag:IN'
4.744766 O b'lemma:b'
4.740937 Gversion b'lemma:nc'
4.733044 O b'lemma:rep2'
4.686977 Supp b'+1:lemma:\xc2\xb5m'
4.648287 Gtype b'lemma:type'
4.641760 O b'-1:lemma:ChIP-exo'
4.637432 Air b'lemma:Aerobic'
4.612308 Technique b'lemma:ChIP-Seq'
4.552359 O b'lemma:rep3'
4.544430 Supp b'lemma:nh4cl'
4.492332 Med b'lemma:lb'
4.439803 O b'lemma:Cra'
4.427104 Gtype b'lemma:arca8myc'
4.360255 O b'lemma:a'
4.334331 Supp b'lemma:glucose'
4.324045 O b'postag::'
4.225895 Gtype b'lemma:delta-arca'
4.196049 OD b'lemma:od450'
4.164044 Gtype b'lemma:wt'
4.160035 OD b'+1:lemma:stationary'
4.107066 Supp b'lemma:rifampicin'
4.089185 Technique b'lemma:rna-seq'
4.023125 Gtype b'lemma:fnr8myc'
3.987616 Supp b'lemma:acetate'
3.959560 Supp b'lemma:Fe'
3.767113 O b'-1:lemma:Aerobic'
3.742419 Technique b'lemma:chip-seq'
3.719024 Supp b'lemma:dpd'
3.697799 Anti b'lemma:none'
3.628511 Gtype b'lemma:\xce\xb4fur'
3.610358 O b'-1:lemma:0.3-0.35'
3.589450 O b'lemma:.'
3.589450 O b'postag:.'
3.579795 Supp b'lemma:fructose'
3.551159 Gtype b'lemma:delta-fnr'
3.542698 O b'+1:lemma:od600'
3.524374 O b'lemma:-'
3.524138 Gversion b'-1:lemma:nc'
3.508492 Technique b'lemma:rnaseq'
3.507955 Supp b'lemma:no3'
3.411452 Temp b'-1:lemma:sample'
3.356731 Vess b'lemma:flask'
3.356731 Vess b'-1:lemma:warm'
3.344734 Gtype b'lemma:\xe2\x88\x86'
3.342213 Gtype b'lemma:nsrr'
3.307055 Med b'+1:lemma:0.4'
3.294711 Anti b'lemma:seqa'
3.198770 Anti b'lemma:anti-myc'
3.181726 Supp b'+1:lemma:1'
3.157564 O b'-1:lemma:type'
3.124717 Technique b'-1:lemma:IP'
3.101009 pH b'lemma:ph5'
3.101009 pH b'+1:lemma:.5'
3.088003 O b'lemma:CEL'
3.079066 O b'-1:lemma:glucose'
3.060659 Temp b'-1:lemma:\xcf\x8332'
3.059431 O b'-1:lemma:0.3'
3.049487 O b'-1:lemma:anaerobic'
3.042109 O b'lemma:chip'
3.030894 Supp b'lemma:arginine'
3.023592 Gtype b'-1:lemma:ptac'
2.997640 Med b'lemma:m63'
2.992347 O b'+1:postag:RB'
2.983691 O b'postag:VBN'
2.926938 Strain b'+1:lemma:substr'
2.901956 Supp b'+1:lemma:2'
2.867119 Gtype b'+1:lemma:with'
2.866259 Gtype b'lemma:wild-type'
2.813978 O b'+1:lemma:chip-seq'
2.813217 O b'-1:lemma:lb'
2.811430 Gversion b'lemma:u00096'
2.811430 Gversion b'+1:lemma:.2'
2.805985 Gtype b'lemma:\xce\xb4ompr'
2.805379 Gversion b'lemma:chip-seq'
2.791650 Med b'lemma:media'
2.783789 O b'lemma:with'
2.762838 O b'lemma:or'
2.761734 Supp b'-1:lemma:Cra'
2.735714 Supp b'lemma:nacl'
2.718227 Anti b'+1:lemma:antibody'
2.689667 O b'lemma:at'
2.681896 Technique b'+1:lemma:chip-exo'
2.675618 Gversion b'lemma:.2'
2.675618 Gversion b'-1:lemma:u00096'
2.673476 Technique b'-1:lemma:chip-exo'
2.663534 Anti b'lemma:anti-rpos'
2.642331 O b'lemma:s'
2.641502 Gtype b'+1:lemma:pq'
2.621220 Gtype b'-1:lemma:rpob'
2.612960 Air b'lemma:anaerobically'
2.582119 Supp b'+1:lemma:_'
2.546680 O b'postag:DT'
2.543407 Gversion b'lemma:000913'
2.539879 O b'lemma:oxyr'
2.525639 O b'+1:postag:NNP'
2.495876 Air b'postag:RB'
2.493741 O b'postag:CC'
2.488520 Temp b'lemma:\xc2\xb0c'
2.472865 Temp b'-1:lemma:43'
2.468054 Gtype b'+1:lemma:ph5'
2.460194 O b'+1:lemma:o.d.'
2.457589 O b'-1:lemma:\xc2\xb0c'
2.446783 Supp b'-1:lemma:\xc2\xb5m'
2.446748 Med b'-1:lemma:ml'
2.432723 pH b'lemma:.5'
2.432723 pH b'-1:lemma:ph5'
2.429127 O b'+1:lemma:pq'
2.426199 Gtype b'+1:lemma:flagtag'
2.422501 Temp b'-1:lemma:37'
2.364062 Supp b'-1:lemma:+'
2.359818 O b'lemma:affyexp'
2.358214 Supp b'lemma:iptg'
2.345240 Gtype b'lemma:\xce\xb4soxs'
2.293242 O b'-1:lemma:l1'
2.283378 O b'lemma:for'
2.259276 Supp b'lemma:Leu'
2.257438 Air b'-1:lemma:-'
2.250572 Med b'+1:lemma:minimal'
2.245090 Supp b'-1:lemma:with'
2.236516 Med b'lemma:L'
2.236516 Med b'+1:lemma:broth'
2.194950 Gtype b'lemma:ptac'
2.191764 O b'+1:lemma:acetate'
2.145434 Med b'+1:lemma:2.0'
2.144916 O b'-1:lemma:stpa'
2.139794 Supp b'lemma:20'
2.138137 Technique b'-1:lemma:input'
2.120690 Supp b'lemma:0.2'
2.115282 Air b'lemma:anerobically'
2.108802 O b'lemma:ompr'
2.102080 Air b'-1:lemma:co2'
2.101933 Gtype b'lemma:deltaseqa'
2.101933 Gtype b'-1:lemma:old'
2.098653 Gtype b'-1:lemma:nsrr'
2.094495 O b'lemma:chip-arca'
2.093152 O b'lemma:Lrp'
2.073057 O b'lemma:soxs'
2.073057 O b'lemma:soxr'
2.033842 pH b'+1:postag:CD'
2.030212 Temp b'lemma:37'
2.025024 Temp b'lemma:43'
2.005145 O b'-1:lemma:dpd'
1.996291 Supp b'lemma:methanol'
1.975959 OD b'-1:lemma:~'
1.961870 OD b'lemma:0.3'
1.953650 Supp b'+1:lemma:hour'
1.948299 Phase b'-1:lemma:until'
1.945342 Gtype b'+1:lemma:_'
1.941615 O b'postag:VBG'
1.938029 OD b'-1:lemma:about'
1.930492 O b'lemma:Fur'
1.926280 Gtype b'lemma:pk4854'
1.918352 Technique b'+1:lemma:rna-seq'
1.910079 O b'-1:lemma:media'
1.909335 O b'lemma:genotype/variation'
1.897683 Med b'lemma:glucose'
1.894728 O b'lemma:condition'
1.886371 Supp b'lemma:Adenine'
1.881519 Med b'lemma:broth'
1.881519 Med b'-1:lemma:L'
1.881208 Gtype b'+1:lemma:aerobic'
1.872732 Supp b'+1:lemma:Deficient'
1.854369 O b'lemma:culture'
1.844760 O b'+1:lemma:sparging'
1.836586 Phase b'-1:lemma:mid-log'
1.835743 Gtype b'lemma:WT'
1.826348 Gversion b'+1:lemma:000913'
1.810910 Gtype b'-1:lemma:phtpg'
1.809834 Gtype b'-1:lemma:_'
Top negative:
0.003606 Phase b'-1:postag:TO'
0.003173 O b'+1:lemma:minute'
0.002853 OD b'postag:CC'
0.002630 Technique b'+1:lemma:-rrb-'
0.002520 Technique b'+1:postag:-RRB-'
0.002467 Med b'lemma:m9'
0.002337 Air b'+1:postag:-LRB-'
0.002264 Technique b'+1:lemma:Anaerobic'
0.002098 Phase b'postag:RB'
0.002086 Gtype b'+1:lemma:rna'
0.002053 O b'lemma:~'
0.001666 OD b'-1:postag:JJ'
0.001084 Gtype b'+1:lemma:chip'
0.001034 Air b'+1:lemma:-lrb-'
0.000728 OD b'-1:lemma:to'
0.000728 OD b'-1:postag:TO'
0.000711 O b'-1:lemma:at'
0.000709 O b'+1:lemma:_'
0.000560 Temp b'+1:postag:VB'
0.000555 Gtype b'lemma:lack'
0.000388 OD b'postag:VBD'
0.000335 Air b'-1:postag:RB'
0.000334 OD b'-1:postag:VBN'
0.000307 Air b'-1:lemma:95'
0.000306 Anti b'-1:lemma:Custom'
0.000275 O b'-1:postag:VBZ'
0.000204 Air b'-1:lemma:-lrb-'
0.000203 Air b'-1:postag:-LRB-'
0.000156 Temp b'postag:VB'
0.000139 Supp b'+1:lemma:dissolve'
0.000138 Gtype b'lemma:ptrc'
0.000138 Gtype b'-1:lemma:inducible'
0.000085 Med b'-1:lemma:complete'
0.000051 OD b'+1:lemma:0.35'
0.000048 Temp b'+1:lemma:-rrb-'
0.000043 Air b'-1:lemma:anaerobically'
0.000039 OD b'+1:postag:VBN'
0.000034 Temp b'+1:postag:-RRB-'
0.000030 Supp b'-1:postag:VBN'
0.000028 OD b'lemma:mg1655'
0.000023 OD b'+1:lemma:mg1655'
0.000022 OD b'lemma:k-12'
0.000019 Temp b'lemma:-lrb-'
0.000017 Temp b'postag:-LRB-'
0.000016 Air b'lemma:-rrb-'
0.000015 Air b'postag:-RRB-'
0.000007 Gtype b'lemma:inducible'
0.000007 Gtype b'-1:lemma:carrying'
0.000007 Gtype b'+1:lemma:ptrc'
0.000003 O b'lemma:4'
0.000001 O b'postag:VBZ'
0.000000 Med b'+1:lemma:,'
0.000000 Med b'+1:postag:,'
-0.000019 O b'-1:lemma:g/l'
-0.000078 O b'-1:lemma:iptg'
-0.000082 O b'+1:lemma:until'
-0.000090 Supp b'+1:postag:CD'
-0.000137 O b'+1:lemma:phase'
-0.000630 O b'+1:lemma:grow'
-0.000719 Air b'lemma:,'
-0.000719 Air b'postag:,'
-0.000881 Supp b'-1:postag:NNP'
-0.001151 O b'+1:lemma:95'
-0.001284 O b'lemma:glucose'
-0.001441 O b'lemma:anaerobic'
-0.002285 Supp b'-1:postag:NN'
-0.003211 Air b'-1:lemma:,'
-0.003211 Air b'-1:postag:,'
-0.003285 O b'+1:lemma:rep1'
-0.003344 O b'-1:lemma:n2'
-0.004884 Supp b'+1:postag:IN'
-0.005691 O b'lemma:grow'
-0.008542 O b'lemma:\xce\xb4fur'
-0.008810 O b'lemma:30'
-0.008856 O b'lemma:\xe2\x88\x86'
-0.016851 Gversion b'+1:postag:NN'
-0.017577 Agit b'postag:NN'
-0.019899 OD b'postag:JJ'
-0.021053 Supp b'lemma:and'
-0.035082 Med b'-1:postag:IN'
-0.037650 O b'+1:lemma:shake'
-0.040816 Technique b'-1:lemma::'
-0.042661 Air b'-1:postag:VBN'
-0.047406 O b'lemma:e.'
-0.050232 O b'+1:lemma:300'
-0.057684 Supp b'postag:CD'
-0.060532 Med b'+1:postag:IN'
-0.071550 O b'+1:lemma:5'
-0.074571 Supp b'+1:lemma:-rrb-'
-0.077631 O b'-1:postag:VBN'
-0.083084 OD b'+1:postag:CD'
-0.083227 Air b'postag:CD'
-0.086748 Supp b'+1:postag:-RRB-'
-0.087729 O b'-1:lemma:e.'
-0.089412 O b'-1:lemma:um'
-0.089412 O b'+1:lemma:paraquat'
-0.095031 O b'-1:lemma:,'
-0.095031 O b'-1:postag:,'
-0.097514 Anti b'+1:postag:JJ'
-0.097686 O b'-1:lemma:the'
-0.115298 OD b'+1:postag:-LRB-'
-0.115560 Phase b'-1:postag:NN'
-0.117367 Phase b'-1:postag:JJ'
-0.118533 Supp b'postag:CC'
-0.118866 Med b'-1:postag:NN'
-0.119788 O b'+1:postag:NNS'
-0.128143 O b'lemma:150'
-0.128143 O b'+1:lemma:mg/ml'
-0.128440 Gtype b'postag:CD'
-0.128454 O b'-1:lemma:rifampicin'
-0.130932 Phase b'-1:lemma:at'
-0.144251 Air b'-1:postag:CC'
-0.152959 O b'+1:lemma:c'
-0.153793 O b'+1:lemma:arginine'
-0.155635 O b'+1:lemma:-rrb-'
-0.155871 Phase b'+1:postag:NN'
-0.169334 O b'-1:lemma:1'
-0.178678 O b'-1:lemma:-lrb-'
-0.185252 O b'-1:lemma:cra'
-0.188794 Supp b'+1:postag:VBN'
-0.189587 Supp b'-1:lemma:%'
-0.197975 O b'+1:lemma:.'
-0.197975 O b'+1:postag:.'
-0.206342 O b'-1:postag:IN'
-0.218582 O b'-1:lemma:of'
-0.228664 O b'-1:lemma:0.2'
-0.243004 O b'lemma:phase'
-0.245652 Temp b'postag:JJ'
-0.248718 O b'-1:lemma:30'
-0.258083 Supp b'+1:lemma:rifampicin'
-0.265675 O b'-1:lemma:from'
-0.270538 Anti b'+1:lemma:anti-fur'
-0.275341 Med b'+1:postag:NN'
-0.286886 O b'lemma:20'
-0.287653 Med b'postag:CD'
-0.299457 pH b'postag:NN'
-0.299809 O b'+1:postag:IN'
-0.304068 O b'-1:postag:-LRB-'
-0.308718 O b'+1:lemma:%'
-0.337061 O b'lemma:media'
-0.343972 O b'+1:postag:-RRB-'
-0.375037 O b'-1:lemma:~'
-0.378855 O b'+1:postag:VBG'
-0.390573 O b'+1:lemma:0.3'
-0.442424 Temp b'+1:lemma:to'
-0.442424 Temp b'+1:postag:TO'
-0.442791 O b'lemma:dissolve'
-0.457125 Air b'-1:postag:JJ'
-0.473796 O b'-1:lemma:ml'
-0.487814 O b'-1:lemma:grow'
-0.504521 O b'-1:lemma:od600'
-0.510322 O b'lemma:anaerobically'
-0.574504 O b'lemma:0.3'
-0.603912 O b'+1:lemma:hour'
-0.607283 O b'lemma:od600'
-0.671305 O b'+1:lemma:+'
-0.673609 O b'lemma:fecl2'
-0.687238 O b'-1:lemma:sample'
-0.693028 OD b'+1:postag:NN'
-0.699278 Technique b'-1:postag::'
-0.701848 O b'+1:lemma:fecl2'
-0.704105 Phase b'postag:JJ'
-0.721360 O b'-1:lemma:37'
-0.751804 O b'lemma:2h'
-0.751804 O b'-1:lemma:additional'
-0.765268 O b'+1:lemma:cell'
-0.797811 O b'-1:postag:VBG'
-0.812938 OD b'lemma:-lrb-'
-0.817055 O b'lemma:37'
-0.849161 O b'lemma:0.1'
-0.857948 Temp b'postag:NN'
-0.858109 Supp b'+1:lemma:acetate'
-0.893857 O b'-1:lemma:rpob'
-0.908853 O b'lemma:0.2'
-0.910535 O b'lemma:of'
-0.917031 O b'+1:lemma:g/l'
-0.927240 O b'-1:lemma:dissolve'
-0.927240 O b'+1:lemma:methanol'
-0.952327 O b'-1:postag::'
-1.012901 O b'lemma:mid-log'
-1.041464 O b'-1:lemma:ompr'
-1.052741 O b'lemma:wt'
-1.080730 Anti b'postag:NNP'
-1.207147 O b'+1:lemma:supplement'
-1.210841 O b'lemma:methanol'
-1.241992 Air b'+1:postag:JJ'
-1.248085 O b'lemma:rifampicin'
-1.259918 O b'+1:lemma:at'
-1.297301 O b'-1:lemma:IP'
-1.445280 O b'-1:lemma:nsrr'
-1.572311 O b'+1:lemma:in'
-1.575804 O b'-1:lemma:co2'
-1.596289 OD b'postag:-LRB-'
-1.598275 Supp b'postag:JJ'
-1.805996 Air b'postag:NN'
-1.906139 O b'+1:lemma:2'
-2.059834 O b'+1:lemma:1'
-2.164534 O b'-1:lemma:2'
-3.758611 O b'-1:lemma::'
-3.808109 O b'-1:lemma:_'
0.001509 Air b'+1:lemma:70'
0.001485 O b'-1:lemma:5'
0.001306 O b'-1:lemma:no3'
0.001230 Air b'-1:postag:RB'
0.001224 Med b'-1:lemma:in'
0.001140 OD b'-1:postag:VBN'
0.001060 Technique b'+1:lemma:Anaerobic'
0.001048 O b'+1:postag:SYM'
0.000988 O b'-1:lemma:fnr'
0.000917 O b'lemma:fructose'
0.000830 O b'+1:lemma:use'
0.000649 OD b'+1:postag:VBD'
0.000635 Gtype b'lemma:input'
0.000565 O b'lemma:treatment'
0.000544 Temp b'+1:postag:VB'
0.000534 O b'lemma:EB'
0.000477 OD b'+1:postag:VBN'
0.000465 Supp b'-1:lemma:10'
0.000457 O b'lemma:~'
0.000451 Gtype b'lemma:wild'
0.000403 Air b'postag:NNP'
0.000324 Temp b'-1:postag:NN'
0.000271 Supp b'+1:lemma:of'
0.000230 Supp b'-1:lemma:contain'
0.000161 Gtype b'-1:lemma:small'
0.000112 Supp b'+1:lemma:feso4'
0.000108 Air b'-1:lemma:aerobically'
0.000097 Supp b'lemma:um'
0.000092 Med b'-1:lemma:m9'
0.000070 Temp b'postag:VB'
0.000061 Supp b'-1:lemma:250'
0.000056 O b'+1:lemma:_'
0.000037 Gtype b'postag::'
0.000032 Phase b'-1:postag:IN'
0.000029 Temp b'lemma:-lrb-'
0.000024 Temp b'postag:-LRB-'
0.000018 OD b'+1:lemma:0.15'
0.000013 Gtype b'lemma:small'
0.000006 O b'lemma:agitation'
-0.000006 Supp b'+1:lemma:-rrb-'
-0.000007 Supp b'+1:postag:-RRB-'
-0.000030 O b'+1:lemma:95'
-0.000036 O b'-1:lemma:mid-log'
-0.000163 Gversion b'-1:postag:NN'
-0.000207 OD b'-1:postag:DT'
-0.000850 Supp b'+1:lemma:dpd'
-0.001166 O b'+1:lemma:o2'
-0.001921 Temp b'-1:postag:JJ'
-0.002203 O b'+1:lemma:rep1'
-0.002684 O b'-1:lemma:g/l'
-0.003051 O b'-1:lemma:,'
-0.003051 O b'-1:postag:,'
-0.004416 O b'-1:lemma:until'
-0.005028 O b'lemma:lb'
-0.006746 O b'-1:lemma:iptg'
-0.008099 O b'lemma:minimal'
-0.009386 O b'lemma:glucose'
-0.009971 Gtype b'+1:lemma:2'
-0.011912 Med b'-1:postag:CD'
-0.012108 OD b'+1:postag:NNS'
-0.012515 Air b'-1:lemma:and'
-0.014917 OD b'+1:lemma:0.4'
-0.015462 O b'lemma:co2'
-0.017434 O b'lemma:medium'
-0.017596 O b'+1:lemma:grow'
-0.018130 O b'-1:lemma:1'
-0.019463 Air b'+1:postag:-LRB-'
-0.020969 Air b'-1:lemma:95'
-0.026012 Med b'+1:postag:IN'
-0.029462 Air b'+1:lemma:-rrb-'
-0.029964 Med b'+1:postag:NNS'
-0.030676 Gtype b'-1:postag:CD'
-0.030969 OD b'+1:postag:CC'
-0.032789 Air b'postag:CC'
-0.039308 O b'lemma:m63'
-0.039681 O b'-1:lemma:mm'
-0.043781 O b'-1:lemma:sample'
-0.045727 O b'+1:lemma:5'
-0.048720 Gversion b'+1:postag:NN'
-0.050456 O b'lemma:e.'
-0.051510 Air b'+1:lemma:-lrb-'
-0.052744 Phase b'+1:postag:NN'
-0.060135 O b'lemma:150'
-0.060135 O b'+1:lemma:mg/ml'
-0.061483 OD b'+1:postag:CD'
-0.061644 Gtype b'postag:CD'
-0.062527 O b'-1:lemma:o2'
-0.067638 Air b'-1:lemma:or'
-0.070682 O b'-1:lemma:0.1'
-0.072485 O b'-1:postag:IN'
-0.072778 Gtype b'-1:postag:NN'
-0.074033 Air b'-1:postag:CC'
-0.074222 Temp b'postag:JJ'
-0.085943 O b'-1:lemma:e.'
-0.090975 OD b'postag:JJ'
-0.094470 Supp b'+1:postag:VBN'
-0.097464 O b'+1:lemma:antibody'
-0.099584 O b'+1:lemma:300'
-0.099687 O b'-1:postag:VBN'
-0.107582 Air b'+1:postag:-RRB-'
-0.110954 O b'postag:RB'
-0.132121 Air b'postag:CD'
-0.148947 O b'-1:lemma:-lrb-'
-0.150683 Med b'postag:CD'
-0.155098 Technique b'-1:lemma::'
-0.162800 Supp b'lemma:and'
-0.171938 O b'+1:lemma:minimal'
-0.173189 Supp b'+1:lemma:rifampicin'
-0.173535 O b'lemma:\xe2\x88\x86'
-0.181287 O b'-1:lemma:ml'
-0.195801 O b'+1:lemma:%'
-0.197661 O b'-1:lemma:30'
-0.202314 O b'lemma:\xce\xb4fur'
-0.220334 O b'+1:lemma:or'
-0.221282 Supp b'postag:CC'
-0.230040 O b'lemma:30'
-0.234659 O b'+1:lemma:arginine'
-0.241611 Anti b'+1:postag:JJ'
-0.253103 O b'-1:lemma:rifampicin'
-0.268147 O b'+1:lemma:until'
-0.276798 O b'-1:lemma:of'
-0.283028 pH b'postag:NN'
-0.285848 O b'lemma:aerobically'
-0.308992 O b'+1:lemma:-rrb-'
-0.311262 O b'-1:postag:-LRB-'
-0.314602 O b'-1:lemma:from'
-0.326058 O b'-1:lemma:cra'
-0.332056 O b'+1:lemma:.'
-0.332056 O b'+1:postag:.'
-0.335073 O b'lemma:phase'
-0.341647 Med b'-1:postag:NN'
-0.344072 Med b'+1:postag:NN'
-0.355271 Temp b'+1:lemma:to'
-0.355271 Temp b'+1:postag:TO'
-0.379882 O b'+1:postag:IN'
-0.399275 O b'lemma:od600'
-0.406215 O b'-1:lemma:od600'
-0.417969 O b'+1:postag:NNS'
-0.429718 O b'postag:VBP'
-0.438097 O b'lemma:media'
-0.446126 O b'lemma:anaerobically'
-0.460423 O b'+1:lemma:c'
-0.472382 O b'lemma:dissolve'
-0.479226 O b'-1:lemma:~'
-0.487398 OD b'+1:postag:NN'
-0.497942 O b'+1:postag:-RRB-'
-0.513460 O b'-1:lemma:0.2'
-0.534142 Phase b'-1:lemma:at'
-0.535921 Temp b'postag:NN'
-0.546444 O b'lemma:20'
-0.554159 O b'+1:lemma:\xc2\xb0c'
-0.568528 Supp b'+1:lemma:acetate'
-0.579080 O b'+1:lemma:fecl2'
-0.580237 O b'+1:lemma:0.3'
-0.597189 Technique b'-1:postag::'
-0.633040 O b'lemma:0.3'
-0.635311 Air b'-1:postag:JJ'
-0.639958 O b'+1:lemma:cell'
-0.642294 Supp b'-1:lemma:%'
-0.674687 O b'-1:lemma:grow'
-0.678680 O b'+1:postag:VBG'
-0.725561 O b'-1:lemma:37'
-0.767934 O b'lemma:of'
-0.780908 O b'-1:lemma:co2'
-0.783637 O b'-1:postag::'
-0.801117 O b'lemma:0.2'
-0.825901 O b'lemma:37'
-0.836319 O b'-1:lemma:rpob'
-0.911234 O b'+1:lemma:hour'
-0.911954 O b'lemma:fecl2'
-0.962999 O b'lemma:rifampicin'
-0.978360 O b'lemma:2h'
-0.978360 O b'-1:lemma:additional'
-0.998803 O b'-1:lemma:dissolve'
-0.998803 O b'+1:lemma:methanol'
-1.013445 OD b'lemma:-lrb-'
-1.072784 O b'-1:postag:VBG'
-1.079188 O b'+1:lemma:g/l'
-1.085657 O b'lemma:0.1'
-1.090190 O b'lemma:mid-log'
-1.191813 O b'+1:lemma:supplement'
-1.257824 Anti b'postag:NNP'
-1.260068 O b'+1:lemma:+'
-1.276383 OD b'postag:-LRB-'
-1.370527 O b'lemma:wt'
-1.398724 Phase b'postag:JJ'
-1.421300 O b'+1:lemma:at'
-1.471212 O b'-1:lemma:IP'
-1.494485 O b'-1:lemma:ompr'
-1.577503 O b'-1:lemma:nsrr'
-1.592880 Supp b'postag:JJ'
-1.599977 Air b'+1:postag:JJ'
-1.682029 Air b'postag:NN'
-1.687804 O b'lemma:methanol'
-1.731880 O b'+1:lemma:in'
-2.271152 O b'+1:lemma:2'
-2.300463 O b'-1:lemma:2'
-2.728413 O b'+1:lemma:1'
-3.852462 O b'-1:lemma:_'
-4.219153 O b'-1:lemma::'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.19555004078116134, 'c2': 0.013719557943369584}
best CV score:0.8266077920368616
model size: 0.11M
Flat F1: 0.8150979684771513
precision recall f1-score support
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 1.000 0.909 0.952 22
Med 0.893 0.877 0.885 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.810 0.758 0.783 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.937 0.840 0.886 106
Substrain 0.000 0.000 0.000 1
Supp 0.853 0.684 0.759 136
Gversion 0.000 0.000 0.000 0
avg / total 0.882 0.767 0.815 480
Top likely transitions:
OD -> OD 7.029011
Agit -> Agit 6.826413
Temp -> Temp 5.979472
Med -> Med 5.720420
Anti -> Anti 5.293877
Gversion -> Gversion 4.696471
Technique -> Technique 4.642372
Air -> Air 4.554023
Supp -> Supp 4.536382
Phase -> Phase 4.521590
Gtype -> Gtype 4.384473
O -> O 3.790788
pH -> pH 2.512302
Gtype -> Supp 1.227863
O -> Supp 1.192139
O -> Technique 0.934775
O -> Gtype 0.662404
Substrain -> Gtype 0.296928
Med -> O 0.185994
O -> Anti 0.184766
Air -> O 0.174165
Temp -> O 0.096665
O -> Gversion 0.076653
O -> Temp 0.057678
OD -> Phase 0.022845
Technique -> Air 0.001578
O -> Strain 0.000001
O -> Med -0.054605
Technique -> pH -0.057365
Supp -> O -0.119271
Anti -> O -0.138393
Supp -> Technique -0.159198
O -> OD -0.170727
Supp -> Med -0.220567
Phase -> OD -0.414455
Air -> Temp -0.424565
OD -> Air -0.495373
Gtype -> Anti -0.639969
Agit -> O -0.781636
Technique -> O -0.863862
Gtype -> O -0.926865
OD -> O -1.090238
Substrain -> O -1.190917
Med -> Supp -1.321707
O -> Air -1.398663
Top unlikely transitions:
OD -> OD 7.029011
Agit -> Agit 6.826413
Temp -> Temp 5.979472
Med -> Med 5.720420
Anti -> Anti 5.293877
Gversion -> Gversion 4.696471
Technique -> Technique 4.642372
Air -> Air 4.554023
Supp -> Supp 4.536382
Phase -> Phase 4.521590
Gtype -> Gtype 4.384473
O -> O 3.790788
pH -> pH 2.512302
Gtype -> Supp 1.227863
O -> Supp 1.192139
O -> Technique 0.934775
O -> Gtype 0.662404
Substrain -> Gtype 0.296928
Med -> O 0.185994
O -> Anti 0.184766
Air -> O 0.174165
Temp -> O 0.096665
O -> Gversion 0.076653
O -> Temp 0.057678
OD -> Phase 0.022845
Technique -> Air 0.001578
O -> Strain 0.000001
O -> Med -0.054605
Technique -> pH -0.057365
Supp -> O -0.119271
Anti -> O -0.138393
Supp -> Technique -0.159198
O -> OD -0.170727
Supp -> Med -0.220567
Phase -> OD -0.414455
Air -> Temp -0.424565
OD -> Air -0.495373
Gtype -> Anti -0.639969
Agit -> O -0.781636
Technique -> O -0.863862
Gtype -> O -0.926865
OD -> O -1.090238
Substrain -> O -1.190917
Med -> Supp -1.321707
O -> Air -1.398663
Top positive:
5.312005 O b'word[:2]:re'
4.884582 Technique b'word[:2]:Ch'
4.406858 Air b'lemma:anaerobic'
3.944633 O b'postag::'
3.862898 O b'lemma:1'
3.862898 O b'word:1'
3.693885 O b'word[:1]:S'
3.634278 O b'postag:IN'
3.455038 Air b'word[:2]:Ae'
3.455038 Air b'word:Aerobic'
3.425015 Technique b'word[:2]:RN'
3.411467 O b'word[:2]:Rp'
3.351922 Gtype b'word[:1]:\xce\x94'
3.295787 Gtype b'word[:2]:cr'
3.209157 OD b'word[:1]:O'
3.145528 Gtype b'word[:2]:Fl'
3.124141 O b'lemma:_'
3.124141 O b'word[:1]:_'
3.124141 O b'word:_'
3.093107 Air b'postag:RB'
3.052912 O b'+1:postag:RB'
2.979721 O b'word:A'
2.971788 O b'-1:lemma:tag'
2.882253 O b'lemma:3'
2.882253 O b'word:3'
2.855255 O b'word[:1]:G'
2.826283 O b'lemma:2'
2.826283 O b'word:2'
2.801121 Phase b'lemma:stationary'
2.801121 Phase b'word:stationary'
2.742452 Gtype b'word[:1]:d'
2.729707 Air b'word[:1]:A'
2.725212 Supp b'-1:word:Cra'
2.626064 Supp b'lemma:arginine'
2.509102 O b'-1:word:Aerobic'
2.466965 O b'word[:2]:ge'
2.441206 Supp b'+1:word:hours'
2.439697 O b'word[:2]:or'
2.414611 O b'lemma:a'
2.383495 O b'lemma:.'
2.383495 O b'postag:.'
2.383495 O b'word:.'
2.376885 Supp b'word[:1]:I'
2.372488 O b'+1:word:ChIP-Seq'
2.332104 Air b'word[:2]:an'
2.319866 O b'-1:word:tag'
2.286706 O b'word[:1]:B'
2.264178 Temp b'word[:1]:3'
2.232768 Technique b'lemma:ChIP-exo'
2.217911 Temp b'-1:word:sample'
2.211263 O b'postag:CC'
2.209541 O b'word[:1]:C'
2.191226 Supp b'word[:2]:Fe'
2.181901 Supp b'lemma:nitrate'
2.181901 Supp b'word[:2]:ni'
2.181901 Supp b'word:nitrate'
2.175597 O b'-1:lemma:lb'
2.161370 Air b'word[:2]:An'
2.161370 Air b'word:Anaerobic'
2.146764 Temp b'-1:lemma:sample'
2.122014 O b'word[:2]:Cu'
2.100150 OD b'word[:2]:OD'
2.097281 O b'lemma:with'
2.097281 O b'word:with'
2.096745 O b'-1:lemma:anaerobic'
2.095524 O b'lemma:-'
2.095524 O b'word:-'
2.085444 Gtype b'lemma:wt'
2.076545 Gtype b'word[:1]:W'
2.074067 O b'postag:VBN'
2.042662 Gversion b'lemma:chip-seq'
2.032616 Gtype b'lemma:arca8myc'
2.032616 Gtype b'word:ArcA8myc'
2.019776 Gversion b'word[:2]:00'
1.980973 O b'postag:DT'
1.968660 Gversion b'-1:lemma:nc'
1.968660 Gversion b'-1:word:NC'
1.961531 Med b'word[:1]:M'
1.921062 O b'word[:2]:ch'
1.893301 Gversion b'word:ChIP-Seq'
1.885602 Med b'word[:1]:L'
1.878552 O b'isLower'
1.865095 Gtype b'lemma:type'
1.865095 Gtype b'word[:2]:ty'
1.865095 Gtype b'word:type'
1.850010 Supp b'word[:2]:gl'
1.837123 Phase b'lemma:mid-log'
1.837123 Phase b'word:mid-log'
1.811977 Supp b'lemma:Iron'
1.811977 Supp b'word[:2]:Ir'
1.811977 Supp b'word:Iron'
1.811977 Supp b'+1:word:Deficient'
1.797891 Anti b'word[:2]:an'
1.792147 O b'+1:lemma:od600'
1.792147 O b'+1:word:OD600'
1.788559 Med b'lemma:MOPS'
1.788559 Med b'word[:2]:MO'
1.788559 Med b'word:MOPS'
1.766167 Strain b'+1:lemma:substr'
1.766167 Strain b'+1:word:substr'
1.752330 O b'word[:2]:Cr'
1.752330 O b'word:Cra'
1.749824 O b'+1:postag:NNP'
1.679832 Gtype b'-1:postag:VBG'
1.660773 Air b'-1:lemma:co2'
1.660773 Air b'-1:word:CO2'
1.660308 Supp b'+1:lemma:\xc2\xb5m'
1.660308 Supp b'+1:word:\xc2\xb5M'
1.651105 Air b'+1:postag:IN'
1.650444 O b'word[:1]:E'
1.641207 O b'lemma:at'
1.630939 Supp b'word[:1]:1'
1.629832 Gtype b'lemma:flag-tag'
1.629832 Gtype b'-1:lemma:c-terminal'
1.629832 Gtype b'word:Flag-tag'
1.629832 Gtype b'-1:word:C-terminal'
1.622707 Gtype b'-1:lemma:\xe2\x88\x86'
1.622707 Gtype b'-1:word:\xe2\x88\x86'
1.612203 Gtype b'word[:2]:de'
1.564079 Supp b'lemma:nh4cl'
1.564079 Supp b'word[:2]:NH'
1.561438 OD b'+1:lemma:stationary'
1.561438 OD b'+1:word:stationary'
1.553871 Technique b'word[:1]:C'
1.517787 Supp b'+1:lemma:1'
1.517787 Supp b'+1:word:1'
1.515416 Supp b'lemma:pq'
1.515416 Supp b'word[:2]:PQ'
1.515416 Supp b'word:PQ'
1.510927 O b'word[:2]:Pu'
1.483322 Vess b'lemma:flask'
1.483322 Vess b'-1:lemma:warm'
1.483322 Vess b'word[:2]:fl'
1.483322 Vess b'word:flask'
1.483322 Vess b'-1:word:warmed'
1.475753 Technique b'symb'
1.469180 O b'word[:1]:T'
1.460811 Gversion b'lemma:asm584v2'
1.460811 Gversion b'word[:2]:AS'
1.460811 Gversion b'word:ASM584v2'
1.446236 Anti b'+1:lemma:antibody'
1.446236 Anti b'+1:word:antibody'
1.444397 Air b'word[:1]:a'
1.443964 Gtype b'word[:1]:w'
1.416989 Gtype b'hGreek'
1.397052 Substrain b'lemma:mg1655'
1.397052 Substrain b'word[:2]:MG'
1.397052 Substrain b'word:MG1655'
1.394402 O b'lemma:\xcf\x8332'
1.394402 O b'word[:1]:\xcf\x83'
1.394402 O b'word[:2]:\xcf\x833'
1.394402 O b'word:\xcf\x8332'
1.377208 O b'word[:1]:R'
1.375050 Med b'+1:lemma:0.4'
1.375050 Med b'+1:word:0.4'
1.364759 O b'lemma:Custom'
1.364759 O b'word:Custom'
1.360005 O b'word[:2]:fo'
1.350754 Supp b'lemma:rifampicin'
1.350754 Supp b'word:rifampicin'
1.344579 Strain b'word[:1]:K'
1.343710 Supp b'word[:2]:ri'
1.340304 pH b'lemma:ph5'
1.340304 pH b'+1:lemma:.5'
1.340304 pH b'word:pH5'
1.340304 pH b'+1:word:.5'
1.337816 Gtype b'lemma:nsrr'
1.337816 Gtype b'word[:2]:Ns'
1.337816 Gtype b'word:NsrR'
1.326904 Strain b'lemma:k-12'
1.326904 Strain b'word[:2]:K-'
1.326904 Strain b'word:K-12'
1.314361 Supp b'+1:lemma:2'
1.314361 Supp b'+1:word:2'
1.308459 Med b'word[:2]:LB'
1.308459 Med b'word:LB'
1.298260 Gtype b'symb'
1.294311 O b'+1:lemma:pq'
1.294311 O b'+1:word:PQ'
1.294271 Substrain b'word[:1]:M'
1.290578 Gtype b'-1:postag:VBP'
1.283956 Gversion b'word[:2]:Ch'
1.268071 Gtype b'postag:JJ'
1.261557 O b'-1:lemma:0.3-0.35'
1.261557 O b'-1:word:0.3-0.35'
1.259366 O b'lemma:b'
1.259366 O b'word:B'
1.257660 O b'-1:lemma:glucose'
1.257660 O b'-1:word:glucose'
1.256368 O b'+1:lemma:nacl'
1.256368 O b'+1:word:NaCl'
1.250169 O b'lemma:rpob'
1.250169 O b'word:RpoB'
1.248890 O b'word:Lrp'
1.243321 Med b'+1:lemma:g/l'
1.243321 Med b'+1:word:g/L'
1.239040 pH b'+1:postag:CD'
1.232026 O b'lemma:delta'
1.232026 O b'word:delta'
1.230236 O b'word[:1]:H'
Top negative:
-0.068713 Med b'-1:postag:CD'
-0.070898 pH b'isLower'
-0.071980 O b'lemma:dpd'
-0.071980 O b'word[:2]:DP'
-0.071980 O b'word:DPD'
-0.072232 O b'-1:lemma:of'
-0.072232 O b'-1:word:of'
-0.075191 O b'-1:lemma:o2'
-0.075191 O b'-1:word:O2'
-0.078769 Phase b'+1:postag:NN'
-0.079557 Supp b'-1:postag:VBG'
-0.079633 Air b'-1:postag:VBN'
-0.083786 Air b'postag:CC'
-0.087096 O b'word[:2]:OD'
-0.093025 Supp b'postag:CD'
-0.093410 O b'word[:2]:20'
-0.097736 O b'+1:lemma:arginine'
-0.099182 O b'word[:1]:l'
-0.103765 Temp b'postag:NN'
-0.104490 O b'-1:postag:-LRB-'
-0.105330 O b'+1:lemma:fecl2'
-0.105330 O b'+1:word:FeCl2'
-0.105938 Air b'-1:postag:CC'
-0.107646 O b'-1:word:OmpR'
-0.109102 O b'+1:lemma:\xc2\xb0c'
-0.109102 O b'+1:word:\xc2\xb0C'
-0.112420 Air b'postag:-RRB-'
-0.112420 Air b'word[:2]:-R'
-0.117390 Air b'isLower'
-0.117817 O b'-1:lemma:IP'
-0.117817 O b'-1:word:IP'
-0.119059 Anti b'+1:lemma:anti-fur'
-0.119059 Anti b'+1:word:anti-Fur'
-0.120171 O b'word[:1]:g'
-0.122244 Technique b'isNumber'
-0.123373 O b'lemma:of'
-0.123373 O b'word[:2]:of'
-0.123373 O b'word:of'
-0.125903 O b'+1:postag:IN'
-0.127562 O b'+1:lemma:c'
-0.128049 OD b'postag:CD'
-0.128910 Gtype b'postag:NNP'
-0.131123 O b'lemma:anaerobically'
-0.131123 O b'word:anaerobically'
-0.133893 Supp b'word[:2]:mi'
-0.136181 O b'-1:word:the'
-0.136609 O b'-1:lemma:od600'
-0.136609 O b'-1:word:OD600'
-0.137723 O b'+1:lemma:+'
-0.137723 O b'+1:word:+'
-0.138435 O b'word[:1]:F'
-0.140881 O b'word[:2]:0.'
-0.141470 Air b'symb'
-0.141558 O b'word[:1]:p'
-0.142135 O b'lemma:150'
-0.142135 O b'+1:lemma:mg/ml'
-0.142135 O b'word[:2]:15'
-0.142135 O b'word:150'
-0.142135 O b'+1:word:mg/mL'
-0.143733 Phase b'-1:word:at'
-0.143958 O b'-1:lemma:iptg'
-0.143958 O b'-1:word:IPTG'
-0.145720 Phase b'-1:lemma:at'
-0.148058 OD b'+1:lemma:~'
-0.148058 OD b'+1:word:~'
-0.154564 Anti b'symb'
-0.168424 O b'+1:lemma:-rrb-'
-0.168424 O b'+1:word:-RRB-'
-0.171070 OD b'+1:postag:CD'
-0.178172 Air b'-1:lemma:or'
-0.178172 Air b'-1:word:or'
-0.183332 O b'-1:postag:VBN'
-0.185846 O b'lemma:20'
-0.185846 O b'word:20'
-0.187116 O b'-1:postag:IN'
-0.187838 Gtype b'-1:lemma:,'
-0.187838 Gtype b'-1:postag:,'
-0.187838 Gtype b'-1:word:,'
-0.197654 OD b'lemma:~'
-0.197654 OD b'word[:1]:~'
-0.197654 OD b'word:~'
-0.209004 O b'lemma:phase'
-0.209004 O b'word:phase'
-0.232938 O b'word[:2]:mg'
-0.241910 O b'lemma:37'
-0.241910 O b'word[:2]:37'
-0.241910 O b'word:37'
-0.256827 O b'+1:lemma:.'
-0.256827 O b'+1:postag:.'
-0.256827 O b'+1:word:.'
-0.258887 O b'+1:postag:-RRB-'
-0.260688 O b'word[:1]:K'
-0.271025 Temp b'hGreek'
-0.272963 O b'+1:lemma:cell'
-0.279619 O b'-1:lemma:rpob'
-0.279619 O b'-1:word:RpoB'
-0.282042 O b'lemma:2h'
-0.282042 O b'-1:lemma:additional'
-0.282042 O b'word[:2]:2h'
-0.282042 O b'word:2h'
-0.282042 O b'-1:word:additional'
-0.307901 O b'word[:1]:m'
-0.310789 O b'+1:word:cells'
-0.312898 Technique b'isLower'
-0.323122 Supp b'+1:postag:VBN'
-0.336111 Gtype b'lemma:delta'
-0.336111 Gtype b'word:delta'
-0.338083 O b'-1:lemma:37'
-0.338083 O b'-1:word:37'
-0.363134 O b'word[:1]:N'
-0.365622 Supp b'isUpper'
-0.371038 Temp b'+1:lemma:to'
-0.371038 Temp b'+1:postag:TO'
-0.371038 Temp b'+1:word:to'
-0.375663 O b'lemma:methanol'
-0.375663 O b'word:methanol'
-0.386821 O b'+1:word:C'
-0.390549 O b'word[:2]:Fe'
-0.398822 O b'+1:postag:NNS'
-0.400605 O b'+1:lemma:hour'
-0.402617 OD b'postag:IN'
-0.405062 Med b'+1:postag:NN'
-0.406038 O b'-1:lemma:nsrr'
-0.406038 O b'-1:word:NsrR'
-0.414701 O b'-1:lemma:ompr'
-0.416003 Gtype b'isNumber'
-0.429137 O b'word[:2]:gl'
-0.433599 O b'-1:lemma:grow'
-0.446189 Supp b'word[:2]:an'
-0.449818 Temp b'isLower'
-0.453449 Supp b'-1:lemma:%'
-0.453449 Supp b'-1:word:%'
-0.479179 Med b'-1:postag:IN'
-0.488851 O b'word[:2]:ri'
-0.490659 O b'word[:2]:me'
-0.500177 Med b'-1:postag:NN'
-0.509290 O b'word[:2]:ce'
-0.522634 O b'postag:VBP'
-0.532399 Med b'+1:postag:IN'
-0.539071 O b'+1:lemma:supplement'
-0.539071 O b'+1:word:supplemented'
-0.539739 O b'lemma:rifampicin'
-0.539739 O b'word:rifampicin'
-0.552871 O b'+1:lemma:g/l'
-0.552871 O b'+1:word:g/L'
-0.560634 Agit b'hUpper'
-0.560634 Agit b'hLower'
-0.562608 O b'-1:lemma:dissolve'
-0.562608 O b'+1:lemma:methanol'
-0.562608 O b'-1:word:dissolved'
-0.562608 O b'+1:word:methanol'
-0.619514 Air b'-1:postag:JJ'
-0.625491 Phase b'postag:JJ'
-0.625812 O b'word[:1]:d'
-0.649550 Supp b'word[:1]:C'
-0.703665 Phase b'hUpper'
-0.703665 Phase b'hLower'
-0.716840 O b'+1:lemma:at'
-0.716840 O b'+1:word:at'
-0.763556 Phase b'-1:postag:JJ'
-0.787727 O b'lemma:mid-log'
-0.787727 O b'word:mid-log'
-0.797424 Anti b'postag:NNP'
-0.811067 O b'lemma:wt'
-0.815501 O b'-1:postag:VBG'
-0.817040 O b'word[:1]:0'
-0.819358 O b'postag:RB'
-0.827170 O b'-1:lemma:co2'
-0.827170 O b'-1:word:CO2'
-0.854780 OD b'isNumber'
-0.880817 O b'+1:postag:VBG'
-0.904661 OD b'+1:postag:NN'
-0.945300 O b'+1:lemma:in'
-0.945300 O b'+1:word:in'
-0.951737 O b'+1:lemma:2'
-0.951737 O b'+1:word:2'
-0.992231 Air b'postag:NN'
-1.005360 O b'word:cells'
-1.012629 O b'word[:1]:\xce\x94'
-1.013888 Med b'symb'
-1.045981 O b'+1:lemma:1'
-1.045981 O b'+1:word:1'
-1.053560 O b'-1:lemma:2'
-1.053560 O b'-1:word:2'
-1.102339 Gtype b'word[:1]:C'
-1.167989 Gversion b'isLower'
-1.221456 Gtype b'isUpper'
-1.317978 O b'-1:postag::'
-1.332231 Supp b'symb'
-1.384191 Supp b'postag:JJ'
-1.468390 O b'word[:1]:P'
-1.498430 O b'word[:2]:Ch'
-1.650068 Technique b'postag:NN'
-1.692161 O b'+1:word:hours'
-2.120503 O b'-1:lemma::'
-2.120503 O b'-1:word::'
-2.146800 Supp b'hGreek'
-2.229078 O b'-1:lemma:_'
-2.229078 O b'-1:word:_'
-3.855247 OD b'word[:1]:-'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.08401658210095098, 'c2': 0.01884625069711085}
best CV score:0.7971532567919597
model size: 0.08M
Flat F1: 0.7859098898539817
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.803 0.860 0.831 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.863 0.774 0.816 106
Substrain 0.000 0.000 0.000 1
Supp 0.865 0.662 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.865 0.740 0.786 480
Top likely transitions:
Agit -> Agit 6.618083
OD -> OD 5.963729
Anti -> Anti 5.607797
Temp -> Temp 5.545821
Med -> Med 5.260331
Air -> Air 4.806253
Gversion -> Gversion 4.687833
O -> O 4.630219
Phase -> Phase 4.602318
Gtype -> Gtype 4.461602
Supp -> Supp 4.065962
Technique -> Technique 3.763491
pH -> pH 2.471906
O -> Supp 1.921146
Substrain -> Gtype 1.817014
Gtype -> Supp 1.706501
O -> Gtype 1.385338
O -> Technique 1.373124
Air -> O 1.263736
Technique -> Air 0.981438
O -> Temp 0.947656
O -> Anti 0.881240
O -> Gversion 0.510967
Gtype -> pH 0.475746
Med -> O 0.383498
Gtype -> Air 0.370305
Phase -> O 0.334011
O -> Strain 0.302672
OD -> Phase 0.207286
Temp -> O 0.148085
O -> Med 0.134972
O -> pH 0.068234
O -> Phase 0.059435
Supp -> O 0.022057
O -> Vess 0.017629
Phase -> Air 0.013801
Supp -> Phase -0.000010
Phase -> Technique -0.000094
O -> OD -0.000142
Gversion -> Air -0.000827
Air -> Phase -0.032287
Anti -> Gtype -0.056186
Supp -> Temp -0.140218
Technique -> O -0.163065
Med -> Air -0.167050
Supp -> Anti -0.172664
Anti -> OD -0.203224
Gtype -> O -0.264978
Supp -> Gversion -0.273317
Temp -> Med -0.300017
Top unlikely transitions:
Med -> O 0.383498
Gtype -> Air 0.370305
Phase -> O 0.334011
O -> Strain 0.302672
OD -> Phase 0.207286
Temp -> O 0.148085
O -> Med 0.134972
O -> pH 0.068234
O -> Phase 0.059435
Supp -> O 0.022057
O -> Vess 0.017629
Phase -> Air 0.013801
Supp -> Phase -0.000010
Phase -> Technique -0.000094
O -> OD -0.000142
Gversion -> Air -0.000827
Air -> Phase -0.032287
Anti -> Gtype -0.056186
Supp -> Temp -0.140218
Technique -> O -0.163065
Med -> Air -0.167050
Supp -> Anti -0.172664
Anti -> OD -0.203224
Gtype -> O -0.264978
Supp -> Gversion -0.273317
Temp -> Med -0.300017
Gtype -> Gversion -0.322045
Supp -> Technique -0.339816
Air -> Med -0.378155
Supp -> OD -0.429402
Supp -> Air -0.446692
OD -> Gtype -0.457057
Supp -> Gtype -0.465532
Air -> Supp -0.485627
OD -> Med -0.597226
Gtype -> Anti -0.605601
OD -> Air -0.642908
Agit -> O -0.654857
Air -> OD -0.667036
Gtype -> Med -0.685203
OD -> O -0.817999
Technique -> OD -0.835801
O -> Air -0.855078
Technique -> pH -0.981502
Technique -> Gtype -0.984976
Supp -> Med -1.097285
Substrain -> O -1.099208
Gtype -> OD -1.114446
Med -> Supp -1.496574
Phase -> OD -1.695254
Top positive:
8.123739 O b'lemma:_'
6.810504 Phase b'lemma:stationary'
6.641654 O b'lemma:1'
6.403325 Supp b'lemma:Iron'
6.186494 Air b'lemma:anaerobic'
6.121179 Technique b'lemma:ChIP-exo'
6.115918 Strain b'lemma:k-12'
6.089855 Air b'lemma:aerobic'
5.817542 Phase b'lemma:mid-log'
5.738043 O b'lemma:rpob'
5.580039 O b'lemma:2'
5.561019 Technique b'lemma:chipseq'
5.375911 Air b'-1:lemma:ChIP-Seq'
5.253286 Supp b'lemma:pq'
5.023770 O b'lemma:3'
4.993878 Substrain b'lemma:mg1655'
4.982089 O b'-1:lemma:tag'
4.964173 O b'postag:IN'
4.938595 Gversion b'lemma:asm584v2'
4.926165 Supp b'lemma:nitrate'
4.785605 Gtype b'lemma:\xce\xb4cra'
4.768006 Supp b'lemma:nh4cl'
4.718684 O b'lemma:rep1'
4.670907 Gtype b'lemma:flag-tag'
4.670907 Gtype b'-1:lemma:c-terminal'
4.606839 Supp b'lemma:glucose'
4.553992 O b'lemma:Cra'
4.544271 Supp b'+1:lemma:\xc2\xb5m'
4.491246 Gtype b'lemma:arca8myc'
4.483151 O b'lemma:rep2'
4.433079 Gtype b'-1:lemma:\xe2\x88\x86'
4.339017 Med b'lemma:MOPS'
4.311202 Air b'lemma:Aerobic'
4.296372 O b'lemma:rep3'
4.261737 O b'lemma:\xcf\x8332'
4.226976 O b'lemma:Custom'
4.195337 O b'lemma:b'
4.188524 Med b'lemma:LB'
4.172139 Supp b'lemma:dpd'
4.089549 Med b'lemma:lb'
4.079376 O b'-1:lemma:ChIP-exo'
4.036897 Supp b'lemma:acetate'
4.018214 Gtype b'lemma:wt'
4.015668 Technique b'lemma:rna-seq'
3.920242 Gtype b'lemma:delta-arca'
3.910529 Gversion b'lemma:nc'
3.899136 O b'lemma:a'
3.895888 Gtype b'+1:lemma:type'
3.885009 O b'postag::'
3.855692 Gtype b'lemma:type'
3.834701 Supp b'lemma:no3'
3.819349 OD b'lemma:od600'
3.817994 Supp b'lemma:Fe'
3.765429 Anti b'lemma:none'
3.748597 Gtype b'lemma:fnr8myc'
3.746700 Technique b'lemma:chip-seq'
3.731504 O b'-1:lemma:Aerobic'
3.682782 O b'lemma:.'
3.682782 O b'postag:.'
3.604002 OD b'lemma:od450'
3.566627 Technique b'lemma:ChIP-Seq'
3.529137 O b'lemma:CEL'
3.522238 Supp b'lemma:fructose'
3.519152 Anti b'lemma:seqa'
3.519022 O b'lemma:-'
3.511099 Technique b'lemma:rnaseq'
3.493325 Supp b'+1:lemma:Deficient'
3.455879 Gtype b'lemma:\xe2\x88\x86'
3.419995 Air b'postag:RB'
3.414096 Med b'+1:lemma:0.4'
3.352804 O b'+1:lemma:od600'
3.347175 Gtype b'lemma:delta-fnr'
3.308709 Gversion b'lemma:chip-seq'
3.285099 Supp b'+1:lemma:1'
3.229589 Gtype b'lemma:\xce\xb4fur'
3.161898 Supp b'lemma:arginine'
3.139896 Gtype b'lemma:nsrr'
3.136958 Vess b'lemma:flask'
3.136958 Vess b'-1:lemma:warm'
3.129325 Med b'lemma:m63'
3.128400 Gtype b'+1:lemma:with'
3.125627 pH b'lemma:ph5'
3.125627 pH b'+1:lemma:.5'
3.125247 Supp b'lemma:rifampicin'
3.103906 O b'+1:postag:RB'
3.094719 Gversion b'lemma:000913'
3.087516 O b'-1:lemma:anaerobic'
3.071486 Gtype b'lemma:wild-type'
3.045037 O b'-1:lemma:0.3-0.35'
3.040572 Supp b'+1:lemma:2'
3.014672 O b'postag:VBN'
3.012836 Supp b'-1:lemma:Cra'
3.011017 Gversion b'-1:lemma:nc'
2.965942 O b'-1:lemma:glucose'
2.965565 Supp b'+1:lemma:hour'
2.961946 Anti b'lemma:anti-myc'
2.924402 O b'-1:lemma:lb'
2.922240 Strain b'+1:lemma:substr'
2.919534 O b'lemma:affyexp'
2.903005 O b'lemma:for'
2.879508 Technique b'-1:lemma:IP'
2.872556 O b'lemma:with'
2.842720 O b'-1:lemma:type'
2.828833 Gversion b'lemma:u00096'
2.828833 Gversion b'+1:lemma:.2'
2.821257 Anti b'+1:lemma:antibody'
2.802148 Gversion b'lemma:.2'
2.802148 Gversion b'-1:lemma:u00096'
2.791973 Gtype b'-1:lemma:ptac'
2.785654 O b'lemma:chip'
2.777328 O b'lemma:oxyr'
2.767449 O b'lemma:s'
2.762984 Med b'+1:lemma:2.0'
2.701150 Temp b'lemma:\xc2\xb0c'
2.700498 Temp b'-1:lemma:43'
2.698132 Gtype b'lemma:\xce\xb4soxs'
2.696529 OD b'+1:lemma:stationary'
2.695658 O b'lemma:or'
2.694898 O b'postag:CC'
2.692159 O b'-1:lemma:stpa'
2.668311 O b'lemma:ompr'
2.643579 Supp b'lemma:nacl'
2.630322 O b'lemma:chip-arca'
2.625439 Supp b'+1:lemma:_'
2.617277 Med b'-1:lemma:ml'
2.616109 Gtype b'lemma:\xce\xb4ompr'
2.581776 Temp b'lemma:43'
2.528601 Temp b'-1:lemma:sample'
2.520928 O b'lemma:Lrp'
2.506536 Gtype b'lemma:WT'
2.496575 Gtype b'lemma:ptac'
2.489191 O b'+1:lemma:chip-seq'
2.488069 O b'+1:lemma:o.d.'
2.478372 Technique b'-1:lemma:chip-exo'
2.471197 Gtype b'lemma:pk4854'
2.470284 Gtype b'+1:lemma:ph5'
2.425178 Temp b'-1:lemma:\xcf\x8332'
2.394241 Gtype b'+1:lemma:pq'
2.390337 Supp b'-1:lemma:+'
2.379949 O b'-1:lemma:l1'
2.373863 Gtype b'lemma:deltaseqa'
2.373863 Gtype b'-1:lemma:old'
2.362861 O b'+1:lemma:pq'
2.344951 pH b'lemma:.5'
2.344951 pH b'-1:lemma:ph5'
2.343944 O b'lemma:purr'
2.340182 O b'postag:DT'
2.330847 Med b'+1:lemma:minimal'
2.321541 Supp b'lemma:Leu'
2.318395 O b'lemma:argr'
2.311924 Technique b'+1:lemma:chip-exo'
2.309581 Gtype b'+1:lemma:flagtag'
2.296616 Technique b'-1:lemma:input'
2.290860 Temp b'-1:lemma:37'
2.268695 pH b'+1:postag:CD'
2.260677 Air b'-1:lemma:-'
2.258589 O b'lemma:Fur'
2.242051 Gtype b'-1:lemma:rpob'
2.232930 Substrain b'+1:lemma:phtpg'
2.209727 O b'+1:lemma:mid-log'
2.203454 O b'+1:lemma:sparging'
2.197358 Anti b'lemma:anti-rpos'
2.189715 Temp b'lemma:37'
2.177841 Med b'lemma:glucose'
2.177663 Supp b'lemma:iptg'
2.156759 Phase b'+1:lemma:for'
2.146515 Gtype b'-1:lemma:nsrr'
2.145729 O b'lemma:soxs'
2.145729 O b'lemma:soxr'
2.116627 Med b'lemma:L'
2.116627 Med b'+1:lemma:broth'
2.108116 Gtype b'+1:lemma:_'
2.105252 O b'+1:lemma:anti-fur'
2.101969 O b'-1:lemma:dpd'
2.101790 O b'postag:SYM'
2.101328 O b'postag:VBG'
2.099930 O b'-1:lemma:\xc2\xb0c'
2.098829 Air b'lemma:anaerobically'
2.098434 Supp b'-1:lemma:\xc2\xb5m'
2.096819 Gtype b'+1:lemma:aerobic'
2.094813 Supp b'lemma:Adenine'
2.088323 O b'lemma:2-3'
2.075369 O b'lemma:at'
2.068102 Vess b'-1:postag:VBN'
2.054291 O b'-1:lemma:0.3'
2.053277 Supp b'lemma:20'
2.013209 Air b'lemma:Anaerobic'
2.012548 Air b'lemma:anerobically'
1.999409 Gtype b'lemma:\xce\xb4soxr'
1.981344 O b'+1:postag:NNP'
1.973476 Med b'postag:NNP'
1.946249 Gtype b'lemma:\xce\xb4oxyr'
1.946126 Phase b'-1:lemma:until'
1.942530 Supp b'-1:lemma:with'
1.936299 O b'lemma:genotype/variation'
1.930729 Temp b'-1:lemma:30'
1.927186 O b'lemma:chip-fnr'
1.924213 Gtype b'-1:postag:VBG'
1.924060 Temp b'+1:lemma:\xc2\xb0c'
1.915381 Technique b'-1:lemma:_'
Top negative:
0.000026 O b'-1:postag:-RRB-'
0.000013 Anti b'lemma:polyclonal'
0.000013 Gtype b'+1:lemma:lacx74/ptg2'
0.000013 O b'lemma:ga'
0.000000 O b'lemma:Deficient'
-0.000007 O b'+1:lemma:pahse'
-0.000008 O b'-1:lemma:chip-exo'
-0.000010 Supp b'+1:lemma:-rrb-'
-0.000010 Supp b'+1:postag:-RRB-'
-0.000013 O b'+1:lemma:delta'
-0.000025 O b'lemma:pahse'
-0.000026 Gversion b'-1:postag:NN'
-0.000058 O b'+1:lemma:phase'
-0.000081 OD b'postag:NNS'
-0.000302 O b'-1:lemma:delta'
-0.000325 O b'+1:lemma:dissolve'
-0.000441 O b'-1:postag:DT'
-0.001613 O b'lemma:10'
-0.002653 Med b'-1:postag:CD'
-0.007301 OD b'+1:postag:NNS'
-0.011796 O b'lemma:minimal'
-0.012879 Air b'postag:CC'
-0.015192 Supp b'+1:lemma:glucose'
-0.015373 O b'lemma:mg1655'
-0.015533 Med b'postag:JJ'
-0.015705 OD b'+1:postag:CD'
-0.016291 O b'+1:lemma:0.4'
-0.019297 O b'+1:lemma:-lcb-'
-0.019455 OD b'+1:lemma:-lrb-'
-0.022330 O b'+1:lemma:antibody'
-0.024436 O b'+1:lemma:grow'
-0.025452 O b'+1:lemma:~'
-0.025572 OD b'+1:lemma:0.4'
-0.026441 Gtype b'+1:postag:NNS'
-0.030832 O b'-1:lemma:the'
-0.033857 O b'lemma:aerobically'
-0.036355 O b'+1:lemma:mm'
-0.037359 Gtype b'+1:lemma:2'
-0.037661 O b'-1:postag:IN'
-0.040653 O b'lemma:medium'
-0.041962 O b'lemma:glucose'
-0.042266 O b'+1:lemma:Aerobic'
-0.043089 Phase b'+1:postag:NN'
-0.044930 O b'+1:lemma:95'
-0.055017 Gtype b'-1:postag:CD'
-0.055240 O b'lemma:o2'
-0.060245 Gtype b'+1:lemma:cra'
-0.060637 O b'lemma:nacl'
-0.061555 Phase b'-1:postag:NN'
-0.071216 O b'-1:postag:VBN'
-0.073581 O b'-1:lemma:mm'
-0.078544 Med b'postag:CD'
-0.090713 Supp b'-1:postag:NNP'
-0.098591 O b'lemma:\xc2\xb0c'
-0.102077 Air b'-1:postag:CC'
-0.102114 O b'lemma:m63'
-0.105468 Temp b'-1:lemma:\xc2\xb0c'
-0.105895 Supp b'lemma:and'
-0.111348 Air b'-1:lemma:or'
-0.115338 O b'+1:lemma:_'
-0.128807 Med b'-1:postag:NN'
-0.128969 Gtype b'lemma:delta'
-0.131150 O b'+1:lemma:or'
-0.132570 O b'+1:lemma:minimal'
-0.135127 O b'-1:lemma:30'
-0.135964 O b'-1:lemma:e.'
-0.140354 Med b'+1:postag:NN'
-0.145665 O b'-1:lemma:-lrb-'
-0.155987 O b'lemma:n2'
-0.156942 O b'-1:lemma:of'
-0.159639 Gversion b'+1:postag:NN'
-0.161027 O b'-1:lemma:\xe2\x88\x86'
-0.166686 O b'lemma:e.'
-0.169994 OD b'postag:JJ'
-0.176847 Med b'+1:postag:NNS'
-0.176866 Supp b'-1:postag:VBG'
-0.183758 O b'lemma:grow'
-0.188546 O b'-1:lemma:n2'
-0.188833 O b'-1:lemma:g/l'
-0.190322 OD b'+1:lemma:and'
-0.195342 OD b'+1:postag:CC'
-0.202144 O b'-1:postag:-LRB-'
-0.205644 O b'lemma:co2'
-0.210227 Supp b'+1:postag:IN'
-0.213468 O b'-1:lemma:0.1'
-0.214864 O b'lemma:phase'
-0.215815 Supp b'+1:postag:VBN'
-0.219355 Gtype b'postag:CD'
-0.239606 Gtype b'-1:postag:SYM'
-0.243275 O b'-1:lemma:from'
-0.244995 Supp b'postag:CC'
-0.246314 Temp b'postag:JJ'
-0.247956 O b'+1:lemma:.'
-0.247956 O b'+1:postag:.'
-0.249604 O b'+1:lemma:5'
-0.250831 Gtype b'-1:postag:DT'
-0.253469 O b'+1:lemma:-rrb-'
-0.254981 O b'+1:lemma:until'
-0.256496 O b'+1:lemma:shake'
-0.257679 O b'+1:lemma:%'
-0.258132 O b'lemma:lb'
-0.269974 Gtype b'+1:lemma:\xe2\x88\x86'
-0.281159 O b'-1:lemma:iptg'
-0.288450 Technique b'-1:lemma::'
-0.293073 O b'+1:postag:IN'
-0.295868 Phase b'-1:lemma:at'
-0.299182 O b'-1:lemma:um'
-0.299182 O b'+1:lemma:paraquat'
-0.314439 O b'lemma:k-12'
-0.325000 O b'+1:lemma:rep1'
-0.330417 Med b'-1:postag:IN'
-0.341066 O b'+1:lemma:c'
-0.359756 O b'lemma:purify'
-0.360517 pH b'postag:NN'
-0.360830 O b'-1:lemma:1'
-0.366396 O b'lemma:30'
-0.368824 Med b'+1:postag:IN'
-0.371177 O b'-1:lemma:rifampicin'
-0.372454 O b'-1:lemma:o2'
-0.379912 Supp b'+1:lemma:rifampicin'
-0.385450 O b'-1:lemma:until'
-0.400292 Anti b'+1:lemma:anti-fur'
-0.408694 Phase b'-1:postag:JJ'
-0.409475 O b'+1:postag:-RRB-'
-0.425033 Anti b'+1:postag:JJ'
-0.431972 O b'-1:lemma:mid-log'
-0.454284 O b'+1:lemma:\xc2\xb0c'
-0.456154 O b'-1:lemma:cra'
-0.468923 O b'+1:lemma:300'
-0.476521 OD b'+1:postag:NN'
-0.486601 O b'+1:lemma:arginine'
-0.497598 O b'-1:lemma:od600'
-0.500312 Temp b'postag:NN'
-0.501307 O b'lemma:\xe2\x88\x86'
-0.527078 O b'-1:lemma:grow'
-0.535232 O b'lemma:media'
-0.560336 Temp b'+1:lemma:to'
-0.560336 Temp b'+1:postag:TO'
-0.580574 Technique b'-1:postag::'
-0.586372 O b'lemma:150'
-0.586372 O b'+1:lemma:mg/ml'
-0.599232 O b'-1:lemma:ml'
-0.631824 O b'lemma:od600'
-0.642215 O b'+1:lemma:cell'
-0.656656 O b'-1:lemma:0.2'
-0.667528 O b'lemma:dissolve'
-0.696155 O b'+1:lemma:0.3'
-0.704278 O b'+1:postag:NNS'
-0.722852 O b'lemma:of'
-0.794409 OD b'lemma:-lrb-'
-0.798043 O b'lemma:mid-log'
-0.800225 Air b'-1:postag:JJ'
-0.807147 O b'+1:lemma:fecl2'
-0.846837 O b'lemma:anaerobically'
-0.848073 O b'-1:postag:VBG'
-0.863647 O b'lemma:\xce\xb4fur'
-0.869227 O b'lemma:anaerobic'
-0.880191 O b'lemma:20'
-0.903243 Supp b'-1:lemma:%'
-0.911617 OD b'postag:-LRB-'
-0.920995 O b'lemma:0.3'
-0.922420 Supp b'+1:lemma:acetate'
-0.960047 O b'-1:lemma:~'
-0.971637 O b'-1:lemma:sample'
-0.997239 O b'-1:lemma:dissolve'
-0.997239 O b'+1:lemma:methanol'
-1.021077 O b'-1:lemma:co2'
-1.029818 O b'-1:postag::'
-1.037126 O b'+1:lemma:g/l'
-1.055847 O b'+1:postag:VBG'
-1.065175 O b'postag:VBP'
-1.100145 O b'lemma:fecl2'
-1.138423 O b'lemma:2h'
-1.138423 O b'-1:lemma:additional'
-1.148498 Air b'postag:NN'
-1.149326 O b'lemma:0.1'
-1.209987 O b'lemma:0.2'
-1.234531 O b'+1:lemma:supplement'
-1.275261 O b'lemma:37'
-1.368318 O b'+1:lemma:at'
-1.399811 O b'-1:lemma:37'
-1.426313 O b'+1:lemma:in'
-1.457935 O b'-1:lemma:rpob'
-1.491896 O b'-1:lemma:ompr'
-1.501624 Air b'+1:postag:JJ'
-1.548871 O b'lemma:wt'
-1.574564 Phase b'postag:JJ'
-1.596170 O b'+1:lemma:hour'
-1.660391 O b'-1:lemma:IP'
-1.699119 Supp b'postag:JJ'
-1.736144 O b'lemma:methanol'
-1.794070 O b'-1:lemma:nsrr'
-1.798927 O b'+1:lemma:+'
-1.799190 Anti b'postag:NNP'
-2.092441 O b'-1:lemma:2'
-2.113784 O b'+1:lemma:2'
-2.209993 O b'lemma:rifampicin'
-2.612840 O b'+1:lemma:1'
-3.674746 O b'-1:lemma:_'
-3.979126 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.04724343003249949, 'c2': 0.01243677446159028}
best CV score:0.7976445146405444
best params:{'c1': 0.06175888892030738, 'c2': 0.007297468450426697}
best CV score:0.8063684219603322
model size: 0.08M
Flat F1: 0.7934791324630633
Flat F1: 0.8038632313016971
precision recall f1-score support
OD 1.000 0.405 0.577 37
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.891 0.860 0.875 57
Med 0.897 0.912 0.904 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.742 0.742 0.742 62
Air 0.807 0.742 0.773 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.862 0.764 0.810 106
Gtype 0.867 0.802 0.833 106
Substrain 0.000 0.000 0.000 1
Supp 0.869 0.684 0.765 136
Supp 0.877 0.684 0.769 136
Gversion 0.000 0.000 0.000 0
avg / total 0.875 0.744 0.793 480
avg / total 0.871 0.758 0.804 480
Top likely transitions:
Agit -> Agit 6.389375
Anti -> Anti 5.797544
OD -> OD 5.755859
Temp -> Temp 5.474910
Med -> Med 5.305285
Gversion -> Gversion 4.804763
O -> O 4.666202
Air -> Air 4.625279
Gtype -> Gtype 4.391065
Phase -> Phase 4.207878
Supp -> Supp 3.772231
Technique -> Technique 3.487681
pH -> pH 2.578623
O -> Supp 1.341155
Gtype -> Supp 1.313090
Substrain -> Gtype 1.142286
O -> Technique 1.070411
O -> Gtype 1.049693
O -> Anti 0.871683
Technique -> Air 0.727345
Gtype -> pH 0.559755
O -> Temp 0.443406
Air -> O 0.413184
Gtype -> Air 0.316166
O -> Gversion 0.270633
O -> Strain 0.150083
Med -> O 0.029148
O -> pH 0.001669
OD -> Temp -0.004690
pH -> O -0.027664
Anti -> O -0.053386
Air -> Gtype -0.064282
Gversion -> O -0.068988
OD -> Technique -0.076420
Phase -> Air -0.090168
O -> Med -0.097953
Phase -> O -0.101900
O -> Phase -0.121729
Anti -> Gtype -0.149802
Air -> Phase -0.152600
Anti -> Supp -0.166950
O -> OD -0.195576
Gversion -> Air -0.198819
Med -> Air -0.247104
Technique -> Supp -0.254151
Supp -> pH -0.311839
Supp -> Anti -0.312452
Anti -> OD -0.340468
Supp -> Phase -0.344456
Gtype -> Technique -0.348541
Agit -> Agit 7.039997
OD -> OD 6.131524
Anti -> Anti 6.088253
Temp -> Temp 5.782167
Med -> Med 5.473727
Phase -> Phase 5.118964
Gversion -> Gversion 5.069590
Air -> Air 5.035955
O -> O 4.832708
Gtype -> Gtype 4.669937
Supp -> Supp 4.378479
Technique -> Technique 3.990893
pH -> pH 2.569701
Substrain -> Gtype 1.830007
O -> Supp 1.626801
O -> Gtype 1.297672
Gtype -> Supp 1.190661
O -> Technique 1.135884
Air -> O 0.818807
Technique -> Air 0.814259
O -> Anti 0.771130
O -> Temp 0.647711
O -> Gversion 0.213529
Med -> O 0.130864
Gtype -> pH 0.110856
Temp -> O 0.071206
O -> Med 0.068395
OD -> Phase 0.032935
O -> Phase 0.005045
O -> Strain 0.004127
Gtype -> Air 0.001026
O -> pH 0.000010
Med -> Air -0.000266
Air -> Phase -0.002144
Supp -> Gtype -0.028407
Gtype -> Phase -0.055051
pH -> O -0.067213
Phase -> O -0.083281
Supp -> Temp -0.086247
O -> Agit -0.105739
Anti -> OD -0.120656
Supp -> Gversion -0.132405
Phase -> Air -0.135463
Air -> Temp -0.140622
OD -> Gtype -0.176085
Gtype -> Gversion -0.192477
O -> OD -0.271290
Technique -> O -0.302420
Supp -> OD -0.335241
Temp -> Med -0.384357
Top unlikely transitions:
Phase -> Air -0.090168
O -> Med -0.097953
Phase -> O -0.101900
O -> Phase -0.121729
Anti -> Gtype -0.149802
Air -> Phase -0.152600
Anti -> Supp -0.166950
O -> OD -0.195576
Gversion -> Air -0.198819
Med -> Air -0.247104
Technique -> Supp -0.254151
Supp -> pH -0.311839
Supp -> Anti -0.312452
Anti -> OD -0.340468
Supp -> Phase -0.344456
Gtype -> Technique -0.348541
Phase -> Technique -0.371932
Gtype -> Gversion -0.440310
Air -> Temp -0.442388
Gtype -> Phase -0.446343
Supp -> Temp -0.482112
OD -> Supp -0.494819
Supp -> O -0.518055
Technique -> O -0.541070
Gtype -> O -0.554034
Supp -> Technique -0.694840
Supp -> OD -0.711794
Supp -> Gversion -0.733427
OD -> Air -0.787405
OD -> Gtype -0.827938
Supp -> Gtype -0.848914
Gtype -> Anti -0.850239
Temp -> Med -0.927802
Gtype -> Med -0.940529
OD -> Med -0.954731
Air -> Med -1.010714
OD -> O -1.020865
O -> Air -1.023312
Supp -> Air -1.036972
Air -> Supp -1.040140
Technique -> pH -1.071992
Agit -> O -1.092416
Technique -> OD -1.136546
Technique -> Gtype -1.152303
Air -> OD -1.203336
Gtype -> OD -1.470509
Substrain -> O -1.705609
Supp -> Med -1.924115
Med -> Supp -2.263703
Phase -> OD -2.559981
O -> Gversion 0.213529
Med -> O 0.130864
Gtype -> pH 0.110856
Temp -> O 0.071206
O -> Med 0.068395
OD -> Phase 0.032935
O -> Phase 0.005045
O -> Strain 0.004127
Gtype -> Air 0.001026
O -> pH 0.000010
Med -> Air -0.000266
Air -> Phase -0.002144
Supp -> Gtype -0.028407
Gtype -> Phase -0.055051
pH -> O -0.067213
Phase -> O -0.083281
Supp -> Temp -0.086247
O -> Agit -0.105739
Anti -> OD -0.120656
Supp -> Gversion -0.132405
Phase -> Air -0.135463
Air -> Temp -0.140622
OD -> Gtype -0.176085
Gtype -> Gversion -0.192477
O -> OD -0.271290
Technique -> O -0.302420
Supp -> OD -0.335241
Temp -> Med -0.384357
Supp -> Technique -0.385060
Supp -> O -0.403868
Gtype -> Med -0.554149
Air -> Med -0.637433
OD -> Med -0.669447
Gtype -> O -0.714185
Technique -> OD -0.717082
Technique -> Gtype -0.718169
Technique -> pH -0.760896
Air -> OD -0.787076
Gtype -> Anti -0.790622
OD -> Air -0.869139
Agit -> O -0.936533
Supp -> Air -0.944719
Air -> Supp -0.951816
OD -> O -0.966392
Gtype -> OD -1.245349
Supp -> Med -1.310718
Substrain -> O -1.335115
O -> Air -1.686756
Phase -> OD -2.096304
Med -> Supp -2.167551
Top positive:
8.778667 O b'lemma:_'
7.894046 Phase b'lemma:stationary'
7.688886 Supp b'lemma:Iron'
7.227846 O b'lemma:1'
6.518255 Air b'lemma:anaerobic'
6.510310 Air b'lemma:aerobic'
6.504238 Phase b'lemma:mid-log'
6.494190 Technique b'lemma:ChIP-exo'
6.481618 O b'lemma:rpob'
6.445611 Strain b'lemma:k-12'
6.104157 O b'lemma:2'
6.023116 Technique b'lemma:chipseq'
5.944249 Air b'-1:lemma:ChIP-Seq'
5.823850 Supp b'lemma:pq'
5.723339 O b'lemma:3'
5.687179 O b'-1:lemma:tag'
5.451451 Gversion b'lemma:asm584v2'
5.250448 Substrain b'lemma:mg1655'
5.231044 O b'lemma:rep1'
5.209409 Gtype b'lemma:\xce\xb4cra'
5.200206 Supp b'lemma:nitrate'
5.178620 O b'lemma:rep2'
5.178433 O b'lemma:Cra'
5.173563 Med b'lemma:MOPS'
5.068820 Gtype b'lemma:flag-tag'
5.068820 Gtype b'-1:lemma:c-terminal'
5.040185 Supp b'+1:lemma:\xc2\xb5m'
5.017969 O b'lemma:rep3'
4.971785 Air b'lemma:Aerobic'
4.954714 Supp b'lemma:glucose'
4.889061 Gtype b'lemma:arca8myc'
4.884882 O b'postag:IN'
4.832496 Supp b'lemma:nh4cl'
4.697100 O b'-1:lemma:ChIP-exo'
4.685588 Gtype b'lemma:delta-arca'
4.678766 Med b'lemma:LB'
4.646146 O b'lemma:b'
4.589396 Gtype b'lemma:wt'
4.555367 O b'lemma:\xcf\x8332'
4.535944 Gtype b'-1:lemma:\xe2\x88\x86'
4.520189 Gtype b'lemma:fnr8myc'
4.461759 Med b'lemma:lb'
4.436556 Technique b'lemma:rna-seq'
4.355492 O b'postag::'
4.344693 O b'lemma:a'
4.294247 O b'-1:lemma:Aerobic'
4.275618 Supp b'lemma:Fe'
4.228638 Anti b'lemma:none'
4.228158 O b'-1:lemma:0.3-0.35'
4.206556 Supp b'lemma:acetate'
4.187817 Supp b'lemma:no3'
4.123083 Technique b'lemma:chip-seq'
4.115374 Technique b'lemma:rnaseq'
4.092073 O b'lemma:Custom'
4.090797 Gtype b'lemma:delta-fnr'
4.086877 Anti b'lemma:seqa'
4.043157 Supp b'-1:lemma:Cra'
4.011760 O b'lemma:CEL'
4.000976 Supp b'lemma:rifampicin'
3.995000 OD b'lemma:od450'
3.983638 Gversion b'lemma:nc'
3.942031 O b'+1:postag:RB'
3.937436 O b'lemma:.'
3.937436 O b'postag:.'
3.911694 O b'+1:lemma:od600'
3.747230 Gversion b'lemma:chip-seq'
3.735836 Gtype b'lemma:type'
3.708583 O b'-1:lemma:anaerobic'
3.691098 Gtype b'+1:lemma:type'
3.680809 Supp b'lemma:dpd'
3.646664 Med b'+1:lemma:0.4'
3.593949 O b'-1:lemma:glucose'
3.588513 Gtype b'lemma:\xe2\x88\x86'
3.552980 Technique b'lemma:ChIP-Seq'
3.547388 OD b'lemma:od600'
3.533518 Gtype b'+1:lemma:with'
3.504439 O b'+1:lemma:o.d.'
3.492405 O b'lemma:-'
3.484369 Gtype b'lemma:\xce\xb4fur'
3.480535 Supp b'+1:lemma:1'
3.463027 Supp b'lemma:arginine'
3.457950 O b'-1:lemma:lb'
3.432558 Gtype b'lemma:nsrr'
3.411785 Vess b'lemma:flask'
3.411785 Vess b'-1:lemma:warm'
3.392532 O b'lemma:with'
3.384479 pH b'lemma:ph5'
3.384479 pH b'+1:lemma:.5'
3.360996 Air b'postag:RB'
3.348572 O b'lemma:for'
3.346364 Gtype b'lemma:wild-type'
3.342085 Strain b'+1:lemma:substr'
3.336804 O b'lemma:oxyr'
3.311067 Supp b'lemma:fructose'
3.305851 Anti b'lemma:anti-myc'
3.281892 Supp b'+1:lemma:Deficient'
3.280890 Med b'lemma:m63'
3.275989 Gtype b'lemma:\xce\xb4soxs'
3.263146 O b'lemma:or'
3.240421 O b'postag:VBN'
3.225118 O b'lemma:s'
3.218060 Supp b'+1:lemma:2'
3.170999 O b'lemma:ompr'
3.157791 O b'-1:lemma:type'
3.150274 Gversion b'-1:lemma:nc'
3.144459 O b'lemma:affyexp'
3.098092 Temp b'-1:lemma:37'
3.074698 Anti b'+1:lemma:antibody'
3.074328 OD b'+1:lemma:stationary'
3.057680 Gtype b'lemma:WT'
3.055594 Technique b'-1:lemma:IP'
3.047772 Supp b'-1:lemma:+'
3.030792 Supp b'lemma:nacl'
3.021146 Gversion b'lemma:u00096'
3.021146 Gversion b'+1:lemma:.2'
3.016112 Air b'lemma:Anaerobic'
3.015642 O b'lemma:chip-arca'
2.992114 Gtype b'lemma:\xce\xb4ompr'
2.991588 Substrain b'+1:lemma:phtpg'
2.962136 Gversion b'lemma:.2'
2.962136 Gversion b'-1:lemma:u00096'
2.943798 Supp b'+1:lemma:_'
2.929777 O b'+1:lemma:anti-fur'
2.906800 Temp b'-1:lemma:43'
2.894662 Gversion b'lemma:000913'
2.885668 Gtype b'-1:lemma:ptac'
2.873518 O b'lemma:2-3'
2.848786 Air b'lemma:anaerobically'
2.846499 Med b'+1:lemma:2.0'
2.846396 Supp b'lemma:Leu'
2.832090 O b'lemma:argr'
2.824032 Gtype b'+1:lemma:flagtag'
2.803595 Air b'lemma:anerobically'
2.790970 Temp b'lemma:43'
2.789734 O b'lemma:soxs'
2.789734 O b'lemma:soxr'
2.761406 Anti b'lemma:anti-rpos'
2.759003 Gtype b'lemma:deltaseqa'
2.759003 Gtype b'-1:lemma:old'
2.758592 O b'+1:lemma:chip-seq'
2.753991 O b'lemma:purr'
2.739456 O b'lemma:Lrp'
2.739128 Gtype b'lemma:pk4854'
2.724879 Temp b'-1:lemma:sample'
2.710711 O b'-1:lemma:stpa'
2.707614 O b'-1:lemma:dpd'
2.693567 O b'lemma:chip'
2.680179 Temp b'lemma:\xc2\xb0c'
2.675708 O b'lemma:at'
2.674777 Supp b'lemma:Adenine'
2.654457 Med b'-1:lemma:ml'
2.621739 Supp b'+1:lemma:hour'
2.617235 Technique b'-1:lemma:chip-exo'
2.613832 Med b'+1:lemma:minimal'
2.609168 O b'lemma:Fur'
2.603191 Gtype b'lemma:ptac'
2.602754 Temp b'-1:lemma:\xcf\x8332'
2.600527 Technique b'-1:lemma:input'
2.586051 Gtype b'-1:lemma:rpob'
2.582507 Supp b'lemma:iptg'
2.575439 pH b'lemma:.5'
2.575439 pH b'-1:lemma:ph5'
2.567178 Phase b'+1:lemma:for'
2.561161 Temp b'lemma:37'
2.554310 Phase b'-1:lemma:mid-log'
2.520491 Gtype b'lemma:\xce\xb4oxyr'
2.510164 O b'postag:SYM'
2.501887 Gtype b'lemma:\xce\xb4soxr'
2.469798 O b'-1:lemma:l1'
2.453386 Phase b'-1:lemma:until'
2.441656 O b'+1:lemma:43'
2.410885 O b'+1:lemma:mid-log'
2.403011 Gtype b'+1:lemma:ph5'
2.401711 Med b'lemma:glucose'
2.400503 Med b'lemma:L'
2.400503 Med b'+1:lemma:broth'
2.386245 O b'+1:lemma:pq'
2.371627 O b'postag:VBG'
2.358742 O b'lemma:chip-fnr'
2.353099 Gtype b'lemma:dfnr'
2.338808 Supp b'+1:lemma:respiratory'
2.338302 O b'+1:lemma:sparging'
2.329852 Gtype b'+1:lemma:aerobic'
2.319775 O b'postag:DT'
2.307514 Supp b'lemma:0.2'
2.298843 Med b'+1:lemma:+'
2.298674 Supp b'lemma:methanol'
2.262217 Gversion b'lemma:_'
2.247831 Gtype b'+1:lemma:pq'
2.246181 O b'lemma:genotype/variation'
2.244933 Air b'-1:lemma:-'
2.243583 Gtype b'-1:lemma:nsrr'
2.241509 Technique b'+1:lemma:chip-exo'
2.238931 Supp b'+1:lemma:and'
2.229747 OD b'lemma:0.3'
2.227356 O b'lemma:pt7'
2.218343 O b'-1:lemma:min'
2.209534 OD b'-1:lemma:~'
2.191059 O b'postag:CC'
2.183306 O b'-1:lemma:media'
9.429627 O b'lemma:_'
8.878639 Phase b'lemma:stationary'
8.718938 Supp b'lemma:Iron'
7.681723 O b'lemma:1'
7.568503 Air b'lemma:aerobic'
7.528752 Technique b'lemma:ChIP-exo'
7.490123 Air b'lemma:anaerobic'
6.800664 O b'lemma:rpob'
6.784655 Supp b'lemma:nitrate'
6.781496 Med b'lemma:MOPS'
6.698412 Strain b'lemma:k-12'
6.360995 Technique b'lemma:chipseq'
6.332061 O b'-1:lemma:tag'
6.294441 O b'lemma:2'
6.134867 Supp b'lemma:pq'
6.056497 Gversion b'lemma:asm584v2'
5.974776 Gtype b'lemma:\xce\xb4cra'
5.968446 O b'lemma:3'
5.959950 Air b'-1:lemma:ChIP-Seq'
5.787437 Gtype b'lemma:flag-tag'
5.787437 Gtype b'-1:lemma:c-terminal'
5.767411 O b'lemma:Custom'
5.622312 Air b'lemma:Aerobic'
5.534195 O b'lemma:rep1'
5.503124 Gtype b'lemma:arca8myc'
5.451254 O b'-1:lemma:ChIP-exo'
5.433030 Substrain b'lemma:mg1655'
5.426412 O b'lemma:rep2'
5.419246 O b'lemma:b'
5.392492 O b'lemma:Cra'
5.313073 Supp b'+1:lemma:\xc2\xb5m'
5.205081 Med b'lemma:LB'
5.079806 Technique b'lemma:ChIP-Seq'
5.049305 Supp b'lemma:glucose'
5.044483 OD b'lemma:od450'
5.039131 O b'lemma:rep3'
5.012495 Gtype b'lemma:delta-arca'
4.965809 Supp b'lemma:nh4cl'
4.923813 Gtype b'lemma:type'
4.896333 O b'lemma:a'
4.860082 Supp b'lemma:Fe'
4.840158 O b'+1:postag:RB'
4.836640 Gtype b'-1:lemma:\xe2\x88\x86'
4.816606 Phase b'lemma:mid-log'
4.811283 Gtype b'lemma:fnr8myc'
4.790845 OD b'+1:lemma:stationary'
4.780811 O b'lemma:\xcf\x8332'
4.762091 Gtype b'lemma:wt'
4.756489 O b'+1:lemma:od600'
4.716971 Technique b'lemma:rna-seq'
4.704242 O b'postag:IN'
4.655483 OD b'lemma:od600'
4.653380 Gversion b'lemma:nc'
4.577875 Anti b'lemma:none'
4.558396 Supp b'lemma:acetate'
4.516720 Supp b'lemma:rifampicin'
4.507138 O b'postag::'
4.433020 Gtype b'+1:lemma:type'
4.356436 Gversion b'-1:lemma:nc'
4.338051 Supp b'-1:lemma:Cra'
4.313945 Technique b'lemma:rnaseq'
4.282860 Med b'lemma:lb'
4.266947 Anti b'lemma:seqa'
4.245888 Supp b'lemma:no3'
4.245555 O b'-1:lemma:0.3-0.35'
4.242062 O b'lemma:.'
4.242062 O b'postag:.'
4.224468 Gtype b'lemma:delta-fnr'
4.214205 Gtype b'lemma:\xce\xb4fur'
4.192928 O b'-1:lemma:Aerobic'
4.142672 Technique b'lemma:chip-seq'
4.113542 Supp b'lemma:dpd'
4.085146 O b'lemma:-'
3.963197 Med b'+1:lemma:0.4'
3.958952 O b'+1:lemma:o.d.'
3.887023 Supp b'lemma:fructose'
3.878469 Supp b'+1:lemma:hour'
3.849287 Strain b'+1:lemma:substr'
3.805978 O b'lemma:with'
3.794001 Vess b'lemma:flask'
3.794001 Vess b'-1:lemma:warm'
3.787347 Gtype b'lemma:nsrr'
3.742649 O b'-1:lemma:glucose'
3.720278 O b'+1:lemma:chip-seq'
3.702007 Gtype b'-1:lemma:ptac'
3.662982 Supp b'+1:lemma:1'
3.654612 Anti b'lemma:anti-myc'
3.649389 Supp b'+1:lemma:Deficient'
3.646552 Supp b'lemma:arginine'
3.618594 O b'lemma:CEL'
3.606640 O b'-1:lemma:0.3'
3.599357 O b'postag:VBN'
3.586637 Temp b'lemma:\xc2\xb0c'
3.576770 Air b'lemma:Anaerobic'
3.574484 O b'-1:lemma:anaerobic'
3.573047 O b'lemma:ompr'
3.556429 Gtype b'lemma:wild-type'
3.554917 Gtype b'-1:lemma:rpob'
3.554502 O b'lemma:2-3'
3.523026 Supp b'-1:lemma:+'
3.503145 O b'lemma:s'
3.499526 Gtype b'+1:lemma:with'
3.489586 Gtype b'lemma:\xe2\x88\x86'
3.467032 O b'-1:lemma:type'
3.452564 Gversion b'lemma:chip-seq'
3.446983 O b'lemma:oxyr'
3.437767 pH b'lemma:ph5'
3.437767 pH b'+1:lemma:.5'
3.432615 Anti b'lemma:anti-rpos'
3.418713 O b'lemma:or'
3.407689 Med b'lemma:m63'
3.401201 O b'lemma:for'
3.394419 Med b'+1:lemma:minimal'
3.357624 Air b'lemma:anerobically'
3.345050 Temp b'-1:lemma:37'
3.316153 Gtype b'+1:lemma:ph5'
3.308024 O b'lemma:chip'
3.305474 Gtype b'+1:lemma:pq'
3.303537 Temp b'-1:lemma:sample'
3.262181 Gtype b'lemma:\xce\xb4ompr'
3.232854 Gversion b'lemma:.2'
3.232854 Gversion b'-1:lemma:u00096'
3.227066 Gversion b'lemma:000913'
3.204195 Phase b'-1:lemma:until'
3.194368 Temp b'-1:lemma:\xcf\x8332'
3.192675 O b'lemma:affyexp'
3.185554 Air b'lemma:anaerobically'
3.157577 Supp b'+1:lemma:2'
3.152351 O b'-1:lemma:dpd'
3.147823 Anti b'+1:lemma:antibody'
3.147197 Gversion b'lemma:u00096'
3.147197 Gversion b'+1:lemma:.2'
3.145534 Med b'+1:lemma:2.0'
3.144986 O b'lemma:chip-arca'
3.128621 O b'-1:lemma:\xc2\xb0c'
3.123647 Gtype b'lemma:\xce\xb4soxs'
3.096543 O b'+1:lemma:mid-log'
3.081866 Technique b'-1:lemma:IP'
3.074036 O b'+1:lemma:pq'
3.055089 Gtype b'lemma:pk4854'
3.047512 Gtype b'+1:lemma:flagtag'
3.033127 Technique b'-1:lemma:chip-exo'
3.002892 Supp b'lemma:Leu'
2.999013 Supp b'lemma:Adenine'
2.974704 O b'-1:lemma:lb'
2.958351 Med b'-1:lemma:ml'
2.936300 Air b'+1:lemma:at'
2.921131 Gtype b'lemma:WT'
2.907355 O b'lemma:argr'
2.906382 Technique b'+1:lemma:chip-exo'
2.887412 OD b'-1:lemma:~'
2.886486 O b'lemma:at'
2.880821 Technique b'-1:lemma:input'
2.874454 Temp b'-1:lemma:43'
2.847136 O b'-1:lemma:stpa'
2.828648 Gtype b'lemma:ptac'
2.821605 Gtype b'lemma:deltaseqa'
2.821605 Gtype b'-1:lemma:old'
2.819393 Supp b'+1:lemma:_'
2.815914 O b'lemma:purr'
2.782076 Supp b'lemma:nacl'
2.766819 Air b'postag:RB'
2.765932 O b'lemma:soxs'
2.765932 O b'lemma:soxr'
2.755196 pH b'lemma:.5'
2.755196 pH b'-1:lemma:ph5'
2.722030 O b'-1:lemma:l1'
2.718971 Air b'-1:postag::'
2.658925 O b'lemma:culture'
2.648763 Med b'lemma:L'
2.648763 Med b'+1:lemma:broth'
2.627139 Technique b'+1:lemma:rna-seq'
2.619872 Med b'lemma:glucose'
2.619781 Supp b'lemma:methanol'
2.591668 O b'lemma:Lrp'
2.561051 O b'lemma:one'
2.550533 O b'+1:lemma:43'
2.549438 Supp b'lemma:iptg'
2.527814 Med b'-1:lemma:LB'
2.524624 Temp b'lemma:37'
2.515848 OD b'-1:lemma:about'
2.506523 Temp b'lemma:43'
2.504102 O b'+1:postag:VBP'
2.486048 Gtype b'lemma:dfnr'
2.463884 O b'postag:DT'
2.460887 O b'postag:VBG'
2.404015 Gtype b'lemma:\xce\xb4soxr'
2.395072 O b'lemma:pt7'
2.386555 Gtype b'lemma:\xce\xb4oxyr'
2.384720 O b'+1:postag:NNP'
2.384009 Phase b'+1:lemma:for'
2.375984 Gtype b'-1:lemma:phtpg'
2.357924 Supp b'lemma:leucine'
2.346880 Gtype b'+1:lemma:aerobic'
2.331271 pH b'+1:postag:CD'
2.296129 Gtype b'-1:lemma:nsrr'
2.286249 O b'lemma:Fur'
2.281780 OD b'lemma:0.3'
2.279276 O b'lemma:delta'
2.265327 Med b'postag:NNP'
Top negative:
-0.007960 O b'+1:lemma:25'
-0.011560 Gtype b'-1:lemma:,'
-0.011560 Gtype b'-1:postag:,'
-0.012403 Air b'-1:lemma:anaerobically'
-0.013219 O b'lemma:pahse'
-0.013507 Gversion b'-1:postag:NN'
-0.013699 O b'+1:lemma:medium'
-0.014516 Med b'-1:postag:CD'
-0.014698 Gtype b'-1:lemma:mg1655'
-0.016645 OD b'+1:lemma:~'
-0.017116 Supp b'+1:lemma:glucose'
-0.018290 OD b'+1:lemma:0.4'
-0.019265 O b'lemma:25'
-0.020700 Med b'+1:postag:NNS'
-0.020972 O b'+1:lemma:0.4'
-0.022100 OD b'+1:postag:-LRB-'
-0.022143 O b'+1:lemma:strain'
-0.024088 Supp b'-1:postag:VBG'
-0.038792 O b'+1:postag:CD'
-0.039859 O b'-1:postag:IN'
-0.040290 O b'+1:lemma:k-12'
-0.041101 O b'lemma:nacl'
-0.042472 Gtype b'+1:lemma:cra'
-0.052362 O b'+1:lemma:grow'
-0.054063 Anti b'-1:postag:NN'
-0.057006 O b'-1:lemma:20'
-0.057134 O b'-1:lemma:mm'
-0.062775 Phase b'-1:postag:NN'
-0.064327 O b'-1:postag:VBN'
-0.064682 O b'postag:RB'
-0.066584 Supp b'-1:postag:NN'
-0.069958 Gtype b'postag:CD'
-0.071415 O b'+1:lemma:95'
-0.073208 Phase b'lemma:pahse'
-0.078903 Gtype b'-1:postag:NN'
-0.080786 O b'+1:lemma:5'
-0.083451 Temp b'-1:lemma:\xc2\xb0c'
-0.084429 O b'+1:lemma:antibody'
-0.093835 O b'-1:lemma:fresh'
-0.095847 Supp b'+1:postag:IN'
-0.103631 OD b'postag:JJ'
-0.105270 O b'+1:lemma:o2'
-0.106875 O b'+1:lemma:mm'
-0.117705 O b'+1:lemma:dissolve'
-0.119607 Med b'+1:postag:NN'
-0.123002 OD b'+1:postag:CD'
-0.127620 O b'-1:lemma:g/l'
-0.133716 Gtype b'-1:postag:CD'
-0.140619 O b'-1:lemma:-lrb-'
-0.143859 O b'lemma:o2'
-0.144789 O b'-1:lemma:o2'
-0.146704 O b'-1:lemma:30'
-0.147636 Temp b'postag:JJ'
-0.152183 Gtype b'+1:lemma:\xe2\x88\x86'
-0.153487 Med b'+1:postag:CC'
-0.156696 O b'lemma:mg1655'
-0.156753 O b'lemma:e.'
-0.159541 Technique b'-1:lemma::'
-0.162599 O b'-1:lemma:minimal'
-0.167611 O b'-1:lemma:with'
-0.176978 O b'-1:postag:-LRB-'
-0.179005 O b'lemma:m63'
-0.180170 O b'lemma:medium'
-0.183738 O b'+1:lemma:Aerobic'
-0.190885 O b'lemma:n2'
-0.191225 Supp b'-1:postag:NNP'
-0.198786 O b'-1:lemma:n2'
-0.199226 Supp b'-1:lemma:and'
-0.199384 O b'lemma:\xc2\xb0c'
-0.202752 O b'-1:lemma:of'
-0.208526 O b'+1:lemma:-rrb-'
-0.210040 O b'-1:lemma:e.'
-0.219231 O b'+1:lemma:shake'
-0.219460 Gtype b'-1:postag:DT'
-0.237900 O b'-1:lemma:0.1'
-0.241643 O b'lemma:lb'
-0.242224 Supp b'lemma:and'
-0.245820 O b'lemma:co2'
-0.252281 Temp b'-1:postag:IN'
-0.261850 OD b'+1:postag:NN'
-0.266916 Supp b'+1:postag:VBN'
-0.267689 O b'+1:lemma:until'
-0.271480 O b'-1:lemma:\xe2\x88\x86'
-0.277039 O b'+1:lemma:minimal'
-0.277788 O b'lemma:grow'
-0.285871 O b'+1:postag:IN'
-0.296129 Med b'postag:-LRB-'
-0.302011 O b'-1:lemma:um'
-0.302011 O b'+1:lemma:paraquat'
-0.304578 O b'+1:postag:-RRB-'
-0.307866 Med b'lemma:-lrb-'
-0.309056 O b'+1:lemma:.'
-0.309056 O b'+1:postag:.'
-0.312126 Air b'-1:lemma:or'
-0.317647 O b'lemma:minimal'
-0.319138 Gtype b'-1:postag:SYM'
-0.326202 O b'-1:lemma:1'
-0.328780 Phase b'-1:lemma:at'
-0.346851 O b'+1:lemma:300'
-0.351977 Med b'-1:postag:NN'
-0.355707 O b'lemma:30'
-0.365992 Gversion b'+1:postag:NN'
-0.367337 O b'-1:lemma:grow'
-0.387748 O b'lemma:k-12'
-0.389573 O b'+1:lemma:cell'
-0.397777 O b'-1:lemma:from'
-0.400558 O b'-1:lemma:mid-log'
-0.403379 O b'+1:lemma:phase'
-0.433545 Supp b'+1:lemma:rifampicin'
-0.436853 O b'+1:lemma:or'
-0.441744 Med b'postag:CD'
-0.446245 Med b'+1:postag:IN'
-0.451884 Gtype b'lemma:delta'
-0.460983 Anti b'+1:postag:JJ'
-0.469979 O b'+1:lemma:_'
-0.472319 O b'-1:lemma:rifampicin'
-0.497593 O b'-1:lemma:cra'
-0.503197 O b'-1:lemma:od600'
-0.504727 Supp b'postag:CC'
-0.508290 pH b'postag:NN'
-0.516046 O b'+1:lemma:%'
-0.518365 Technique b'-1:postag::'
-0.523304 OD b'+1:lemma:and'
-0.525519 OD b'+1:postag:CC'
-0.558490 O b'+1:postag:NNS'
-0.586906 O b'-1:lemma:co2'
-0.603821 O b'lemma:150'
-0.603821 O b'+1:lemma:mg/ml'
-0.605931 O b'+1:lemma:arginine'
-0.606479 O b'lemma:phase'
-0.611575 O b'lemma:od600'
-0.651162 O b'+1:lemma:rep1'
-0.653345 O b'lemma:dissolve'
-0.665212 Med b'-1:postag:IN'
-0.669800 OD b'lemma:-lrb-'
-0.672263 O b'-1:lemma:0.2'
-0.687604 O b'lemma:\xe2\x88\x86'
-0.707413 Temp b'+1:lemma:to'
-0.707413 Temp b'+1:postag:TO'
-0.709054 Temp b'postag:NN'
-0.717292 O b'lemma:mid-log'
-0.727885 O b'-1:lemma:until'
-0.733043 O b'lemma:media'
-0.733111 O b'+1:lemma:c'
-0.747011 OD b'postag:-LRB-'
-0.750366 O b'+1:lemma:0.3'
-0.761257 Anti b'+1:lemma:anti-fur'
-0.768890 Phase b'-1:postag:JJ'
-0.791918 O b'+1:lemma:\xc2\xb0c'
-0.792189 O b'lemma:anaerobically'
-0.829072 O b'lemma:0.2'
-0.870965 O b'lemma:0.3'
-0.872689 O b'lemma:purify'
-0.898705 O b'-1:postag:VBG'
-0.916416 O b'+1:lemma:fecl2'
-0.929519 O b'-1:lemma:~'
-0.964077 Air b'postag:NN'
-0.999189 O b'lemma:20'
-1.006423 O b'lemma:fecl2'
-1.015503 O b'lemma:dpd'
-1.039211 O b'lemma:anaerobic'
-1.067901 O b'-1:lemma:dissolve'
-1.067901 O b'+1:lemma:methanol'
-1.079142 Supp b'+1:lemma:acetate'
-1.086390 O b'lemma:37'
-1.090519 O b'lemma:\xce\xb4fur'
-1.110265 O b'-1:postag::'
-1.136252 O b'-1:lemma:ml'
-1.138020 O b'lemma:2h'
-1.138020 O b'-1:lemma:additional'
-1.184350 O b'lemma:of'
-1.210896 Supp b'-1:lemma:%'
-1.216753 O b'-1:lemma:37'
-1.220049 O b'+1:lemma:g/l'
-1.245093 O b'-1:lemma:sample'
-1.280180 Air b'-1:postag:JJ'
-1.282705 O b'lemma:0.1'
-1.293206 O b'+1:lemma:supplement'
-1.340548 Air b'+1:postag:JJ'
-1.397536 O b'+1:lemma:at'
-1.470536 O b'+1:lemma:in'
-1.532979 O b'+1:postag:VBG'
-1.548239 O b'-1:lemma:rpob'
-1.647386 O b'-1:lemma:ompr'
-1.665792 O b'postag:VBP'
-1.714606 O b'lemma:wt'
-1.723995 O b'-1:lemma:nsrr'
-1.770674 Supp b'postag:JJ'
-1.852907 O b'lemma:rifampicin'
-1.859721 Anti b'postag:NNP'
-1.869393 O b'+1:lemma:+'
-1.873494 O b'-1:lemma:IP'
-2.065639 O b'lemma:methanol'
-2.192016 O b'-1:lemma:2'
-2.353663 O b'+1:lemma:2'
-2.354781 Phase b'postag:JJ'
-2.458047 O b'+1:lemma:hour'
-3.007939 O b'+1:lemma:1'
-3.831961 O b'-1:lemma:_'
-4.149098 O b'-1:lemma::'
-0.000825 O b'+1:lemma:95'
-0.001451 O b'lemma:5'
-0.001572 O b'-1:lemma:-lrb-'
-0.002926 O b'+1:lemma:25'
-0.003089 OD b'-1:postag:DT'
-0.003331 OD b'+1:postag:-LRB-'
-0.003846 O b'+1:lemma:a'
-0.004476 O b'+1:lemma:0.4'
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-0.005115 Gtype b'+1:lemma:2'
-0.005380 Temp b'-1:lemma:\xc2\xb0c'
-0.006805 O b'-1:lemma:,'
-0.006805 O b'-1:postag:,'
-0.007118 Air b'-1:postag:CC'
-0.010580 O b'+1:lemma:dissolve'
-0.012150 OD b'+1:postag:CD'
-0.017346 O b'-1:postag:IN'
-0.019089 O b'-1:lemma:1'
-0.021090 O b'+1:lemma:grow'
-0.021180 O b'lemma:30'
-0.021446 O b'lemma:cell'
-0.021525 OD b'lemma:~'
-0.021651 Gtype b'-1:lemma:mg1655'
-0.022113 Air b'-1:lemma:anaerobically'
-0.023965 O b'lemma:nacl'
-0.025824 Med b'-1:postag:CD'
-0.026049 OD b'postag:IN'
-0.028482 OD b'+1:postag:DT'
-0.029411 OD b'+1:lemma:0.4'
-0.031488 O b'lemma:mg1655'
-0.032375 OD b'-1:lemma:a'
-0.038129 O b'+1:lemma:co2'
-0.041455 O b'-1:lemma:with'
-0.046377 O b'+1:lemma:mm'
-0.046769 O b'+1:lemma:o2'
-0.047221 O b'lemma:medium'
-0.047788 Gtype b'+1:lemma:\xe2\x88\x86'
-0.051338 O b'lemma:k-12'
-0.058113 O b'+1:lemma:shake'
-0.067222 O b'+1:lemma:phase'
-0.067235 Strain b'+1:postag:NN'
-0.068404 Gtype b'-1:postag:SYM'
-0.070459 Phase b'+1:postag:NN'
-0.071893 O b'lemma:m63'
-0.074961 O b'-1:lemma:fresh'
-0.076182 O b'-1:lemma:mm'
-0.081344 Technique b'-1:lemma::'
-0.089803 O b'lemma:o2'
-0.090417 O b'-1:lemma:e.'
-0.090764 O b'lemma:grow'
-0.099382 Supp b'-1:postag:NN'
-0.101790 Gtype b'-1:postag:CD'
-0.106440 O b'+1:lemma:300'
-0.107647 Gtype b'-1:postag:NN'
-0.110265 O b'-1:lemma:\xe2\x88\x86'
-0.113592 O b'lemma:\xc2\xb0c'
-0.113759 O b'+1:lemma:5'
-0.126723 O b'-1:lemma:until'
-0.127511 Supp b'+1:lemma:glucose'
-0.130049 O b'-1:lemma:minimal'
-0.138770 O b'lemma:e.'
-0.140462 O b'lemma:aerobically'
-0.140632 O b'lemma:minimal'
-0.140732 O b'-1:lemma:of'
-0.151688 Phase b'-1:lemma:at'
-0.153011 Supp b'+1:postag:IN'
-0.155728 Air b'-1:lemma:or'
-0.155927 O b'lemma:n2'
-0.158122 O b'lemma:purify'
-0.159148 O b'-1:postag:-LRB-'
-0.162204 O b'-1:lemma:n2'
-0.163370 Gtype b'postag:CD'
-0.165311 O b'+1:lemma:-rrb-'
-0.181332 O b'+1:lemma:antibody'
-0.183547 Med b'postag:CD'
-0.187622 O b'+1:lemma:minimal'
-0.190046 Gversion b'-1:postag:NN'
-0.193027 O b'-1:lemma:o2'
-0.199971 O b'+1:lemma:.'
-0.199971 O b'+1:postag:.'
-0.203385 Med b'-1:postag:NN'
-0.221160 O b'-1:postag:VBN'
-0.230480 Supp b'lemma:and'
-0.232278 Med b'+1:lemma:media'
-0.234457 Med b'+1:postag:CC'
-0.235346 Gtype b'-1:postag:DT'
-0.239623 O b'-1:lemma:um'
-0.239623 O b'+1:lemma:paraquat'
-0.242354 O b'lemma:co2'
-0.264358 O b'-1:lemma:mid-log'
-0.265962 Supp b'-1:postag:NNP'
-0.267624 Supp b'-1:lemma:-'
-0.283009 O b'lemma:phase'
-0.307486 O b'-1:lemma:from'
-0.311456 O b'-1:lemma:rifampicin'
-0.336644 O b'-1:lemma:od600'
-0.348696 O b'-1:lemma:cra'
-0.349206 O b'-1:lemma:30'
-0.349519 O b'+1:lemma:\xc2\xb0c'
-0.376657 O b'+1:lemma:until'
-0.376734 O b'+1:lemma:or'
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-0.393925 Med b'-1:postag:IN'
-0.404484 O b'-1:lemma:0.1'
-0.405885 O b'+1:postag:-RRB-'
-0.410930 OD b'+1:lemma:and'
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-0.458859 O b'lemma:od600'
-0.466920 O b'-1:lemma:grow'
-0.485539 O b'lemma:dissolve'
-0.485571 O b'+1:lemma:arginine'
-0.500536 OD b'+1:postag:CC'
-0.501505 Anti b'+1:lemma:anti-fur'
-0.508110 O b'+1:lemma:_'
-0.509492 O b'lemma:media'
-0.520104 O b'+1:postag:IN'
-0.520122 Med b'+1:postag:NN'
-0.536661 O b'lemma:anaerobic'
-0.537297 OD b'+1:postag:NN'
-0.552346 O b'+1:lemma:%'
-0.557522 Supp b'postag:CC'
-0.561985 O b'lemma:\xe2\x88\x86'
-0.562073 O b'-1:lemma:~'
-0.563392 Temp b'postag:JJ'
-0.565743 O b'-1:lemma:co2'
-0.569796 Technique b'-1:postag::'
-0.575269 O b'lemma:150'
-0.575269 O b'+1:lemma:mg/ml'
-0.583809 O b'+1:lemma:0.3'
-0.589903 Phase b'-1:postag:NN'
-0.589906 Supp b'-1:postag:VBG'
-0.624638 Med b'+1:postag:IN'
-0.647563 OD b'lemma:-lrb-'
-0.651123 O b'lemma:0.3'
-0.672987 O b'+1:postag:NNS'
-0.675261 O b'lemma:fecl2'
-0.712388 Med b'+1:postag:NNS'
-0.714926 O b'+1:lemma:c'
-0.727882 O b'-1:lemma:0.2'
-0.741220 OD b'postag:-LRB-'
-0.746499 Gversion b'+1:postag:NN'
-0.753494 Supp b'+1:postag:VBN'
-0.755447 O b'lemma:\xce\xb4fur'
-0.756879 O b'+1:lemma:fecl2'
-0.756986 pH b'postag:NN'
-0.757378 OD b'postag:JJ'
-0.788163 O b'-1:postag:VBG'
-0.834275 O b'-1:lemma:ml'
-0.897819 Temp b'+1:lemma:to'
-0.897819 Temp b'+1:postag:TO'
-0.904753 O b'lemma:20'
-0.944733 O b'lemma:anaerobically'
-0.963571 O b'+1:lemma:in'
-0.967298 Air b'-1:postag:JJ'
-0.978670 Supp b'+1:lemma:rifampicin'
-0.980602 Phase b'-1:postag:JJ'
-0.986834 O b'lemma:of'
-0.987936 Temp b'postag:NN'
-1.002995 O b'postag:VBP'
-1.014836 O b'lemma:dpd'
-1.041168 Supp b'+1:lemma:acetate'
-1.041187 O b'-1:lemma:sample'
-1.042720 O b'lemma:0.2'
-1.050897 O b'+1:lemma:supplement'
-1.079011 O b'+1:lemma:at'
-1.093829 O b'+1:lemma:cell'
-1.096333 O b'-1:lemma:dissolve'
-1.096333 O b'+1:lemma:methanol'
-1.136240 O b'+1:lemma:g/l'
-1.201055 O b'-1:lemma:rpob'
-1.208075 O b'lemma:2h'
-1.208075 O b'-1:lemma:additional'
-1.245138 O b'-1:lemma:37'
-1.284488 O b'lemma:0.1'
-1.307838 O b'-1:lemma:IP'
-1.367289 O b'+1:postag:VBG'
-1.389589 O b'+1:lemma:+'
-1.436423 Air b'+1:postag:JJ'
-1.446071 O b'lemma:wt'
-1.450739 Supp b'-1:lemma:%'
-1.499193 O b'lemma:37'
-1.538565 O b'-1:postag::'
-1.553221 Air b'postag:NN'
-1.648157 Anti b'postag:NNP'
-1.853282 O b'+1:lemma:hour'
-1.858904 O b'-1:lemma:nsrr'
-1.884215 O b'-1:lemma:ompr'
-2.067974 O b'-1:lemma:2'
-2.131263 O b'lemma:rifampicin'
-2.175822 O b'+1:lemma:2'
-2.308282 O b'lemma:methanol'
-2.446120 Supp b'postag:JJ'
-2.454149 O b'lemma:mid-log'
-2.638968 Phase b'postag:JJ'
-2.760556 O b'+1:lemma:1'
-3.707810 O b'-1:lemma:_'
-3.997262 O b'-1:lemma::'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.10611954839898095, 'c2': 0.006346156532999689}
best CV score:0.8029791834815372
model size: 0.09M
Flat F1: 0.811550814808516
precision recall f1-score support
OD 0.652 0.405 0.500 37
pH 1.000 1.000 1.000 12
Technique 0.875 0.955 0.913 22
Med 1.000 0.842 0.914 57
Temp 0.800 0.889 0.842 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.842 0.914 19
Air 0.804 0.726 0.763 62
Anti 1.000 1.000 1.000 9
Strain 1.000 1.000 1.000 1
Gtype 0.935 0.811 0.869 106
Substrain 0.000 0.000 0.000 1
Supp 0.831 0.721 0.772 136
Gversion 0.000 0.000 0.000 0
avg / total 0.870 0.765 0.812 480
Top likely transitions:
Agit -> Agit 6.951338
OD -> OD 6.384899
Temp -> Temp 6.191832
Med -> Med 5.660137
Anti -> Anti 5.222338
Supp -> Supp 4.948395
Gversion -> Gversion 4.779316
Air -> Air 4.661973
Phase -> Phase 4.585606
O -> O 4.523040
Gtype -> Gtype 4.374544
Technique -> Technique 3.916776
pH -> pH 2.762443
Gtype -> Supp 1.647453
Substrain -> Gtype 1.438721
O -> Supp 1.197603
O -> Technique 1.047286
Technique -> Air 0.678619
Air -> O 0.635169
O -> Gtype 0.582793
O -> Anti 0.576502
Gtype -> Air 0.400088
Med -> O 0.380660
O -> Temp 0.322992
Temp -> O 0.199442
Phase -> O 0.150624
O -> Gversion 0.126987
Supp -> O 0.120279
O -> Med 0.081702
OD -> Phase 0.004611
Gtype -> pH 0.003342
O -> Phase -0.018492
Supp -> Gtype -0.099455
Technique -> O -0.160718
O -> OD -0.177350
Gtype -> O -0.254968
OD -> Air -0.399166
Technique -> Gtype -0.518986
Gtype -> OD -0.674743
O -> Air -0.909565
OD -> O -1.026695
Agit -> O -1.193723
Substrain -> O -1.417707
Phase -> OD -1.598916
Med -> Supp -2.026822
Top unlikely transitions:
Agit -> Agit 6.951338
OD -> OD 6.384899
Temp -> Temp 6.191832
Med -> Med 5.660137
Anti -> Anti 5.222338
Supp -> Supp 4.948395
Gversion -> Gversion 4.779316
Air -> Air 4.661973
Phase -> Phase 4.585606
O -> O 4.523040
Gtype -> Gtype 4.374544
Technique -> Technique 3.916776
pH -> pH 2.762443
Gtype -> Supp 1.647453
Substrain -> Gtype 1.438721
O -> Supp 1.197603
O -> Technique 1.047286
Technique -> Air 0.678619
Air -> O 0.635169
O -> Gtype 0.582793
O -> Anti 0.576502
Gtype -> Air 0.400088
Med -> O 0.380660
O -> Temp 0.322992
Temp -> O 0.199442
Phase -> O 0.150624
O -> Gversion 0.126987
Supp -> O 0.120279
O -> Med 0.081702
OD -> Phase 0.004611
Gtype -> pH 0.003342
O -> Phase -0.018492
Supp -> Gtype -0.099455
Technique -> O -0.160718
O -> OD -0.177350
Gtype -> O -0.254968
OD -> Air -0.399166
Technique -> Gtype -0.518986
Gtype -> OD -0.674743
O -> Air -0.909565
OD -> O -1.026695
Agit -> O -1.193723
Substrain -> O -1.417707
Phase -> OD -1.598916
Med -> Supp -2.026822
Top positive:
8.202551 O b'lemma:1'
8.081205 Supp b'lemma:nitrate'
7.724034 Phase b'lemma:stationary'
7.139079 O b'-2:lemma:_'
7.113779 O b'lemma:rpob'
7.039754 Air b'lemma:aerobic'
6.838389 Air b'lemma:anaerobic'
6.715520 O b'lemma:2'
6.343991 O b'lemma:3'
6.130545 Technique b'lemma:ChIP-exo'
5.730880 Gtype b'lemma:type'
5.677171 Supp b'lemma:no3'
5.464025 Supp b'lemma:pq'
5.438992 Strain b'lemma:k-12'
5.409079 Med b'lemma:MOPS'
5.383170 Gtype b'-2:lemma:genotype/variation'
5.364773 Technique b'lemma:chipseq'
5.303901 Phase b'lemma:mid-log'
5.273251 Substrain b'lemma:mg1655'
5.262924 Anti b'-2:lemma:antibody'
5.234508 O b'-1:lemma:ChIP-exo'
5.167882 O b'lemma:_'
5.116022 O b'+2:lemma:\xc2\xb0c'
5.083422 Air b'lemma:Aerobic'
4.942311 Gtype b'lemma:\xce\xb4cra'
4.924649 Supp b'lemma:nh4cl'
4.774563 O b'lemma:b'
4.709841 O b'postag:IN'
4.702565 Supp b'+1:lemma:\xc2\xb5m'
4.687035 Gtype b'-1:lemma:\xe2\x88\x86'
4.643920 Technique b'lemma:rna-seq'
4.637975 Technique b'lemma:chip-seq'
4.607255 Gtype b'+1:lemma:type'
4.457411 OD b'lemma:od450'
4.452366 O b'-2:lemma:flagtag'
4.351257 O b'+2:lemma:fructose'
4.305727 Supp b'lemma:Iron'
4.305727 Supp b'-2:lemma:Anaerobic'
4.270637 Med b'lemma:LB'
4.264041 Gtype b'lemma:wt'
4.196120 OD b'lemma:od600'
4.164218 Supp b'lemma:acetate'
4.136757 O b'lemma:-'
4.109668 Med b'lemma:lb'
4.038024 O b'lemma:.'
4.038024 O b'postag:.'
4.011633 O b'lemma:a'
4.001990 Gversion b'lemma:chip-seq'
3.980816 O b'lemma:Cra'
3.888163 O b'+1:postag:RB'
3.882391 Gtype b'-2:lemma:genotype'
3.870554 O b'lemma:rep1'
3.786732 O b'-1:lemma:tag'
3.784821 Gtype b'lemma:flag-tag'
3.784821 Gtype b'-1:lemma:c-terminal'
3.784385 Gtype b'-2:lemma:affyexp'
3.777053 Gtype b'lemma:\xe2\x88\x86'
3.728794 O b'+2:lemma:cra'
3.679265 Gtype b'lemma:\xce\xb4fur'
3.669557 Gtype b'-2:lemma:delta'
3.559327 Supp b'lemma:glucose'
3.549105 Gtype b'lemma:nsrr'
3.543860 Supp b'lemma:iptg'
3.508675 Supp b'lemma:arginine'
3.463556 O b'lemma:Custom'
3.436560 O b'-1:lemma:media'
3.426544 O b'-2:lemma:myc'
3.416590 O b'lemma:oxyr'
3.416144 O b'postag:VBN'
3.379211 Air b'-1:lemma:ChIP-Seq'
3.361106 O b'postag::'
3.327937 O b'lemma:culture'
3.281566 Air b'-2:lemma:IP'
3.243630 Gtype b'+1:lemma:with'
3.233953 Supp b'-2:lemma:purr'
3.177625 Supp b'-1:lemma:Cra'
3.154838 Supp b'lemma:Fe'
3.106755 Gtype b'lemma:\xce\xb4ompr'
3.091806 Technique b'+2:lemma:ph5'
3.085874 Supp b'+1:lemma:1'
3.076198 Technique b'lemma:rnaseq'
3.067570 O b'lemma:purr'
3.056379 O b'+1:postag:VBP'
2.992692 Med b'+2:lemma:b2'
2.989554 Supp b'lemma:nacl'
2.977780 O b'lemma:rep2'
2.962704 O b'-1:lemma:0.3'
2.933202 Supp b'lemma:fructose'
2.929584 Temp b'-1:lemma:sample'
2.914017 pH b'lemma:ph5'
2.914017 pH b'+1:lemma:.5'
2.909617 O b'lemma:CEL'
2.897129 Supp b'+1:lemma:_'
2.888676 O b'-2:lemma:~'
2.886570 Supp b'+1:lemma:2'
2.868631 Technique b'lemma:ChIP-Seq'
2.863602 Supp b'lemma:rifampicin'
2.844607 O b'-1:lemma:type'
2.822375 O b'lemma:argr'
2.738012 O b'lemma:Lrp'
2.736527 Supp b'-2:lemma:shake'
2.722390 O b'-1:lemma:anaerobic'
2.722131 Technique b'-2:lemma:Fur'
2.717816 Gtype b'-1:lemma:rpob'
2.702398 O b'-1:lemma:\xc2\xb0c'
2.697548 Gtype b'-1:lemma:ptac'
2.686027 Gtype b'lemma:\xce\xb4soxs'
2.672826 O b'-2:lemma:ChIP-Seq'
2.652232 O b'lemma:s'
2.640574 Temp b'lemma:43'
2.616265 O b'-1:lemma:glucose'
2.604674 O b'-2:lemma:fructose'
2.596037 Gversion b'lemma:.2'
2.596037 Gversion b'-1:lemma:u00096'
2.593526 Supp b'+2:lemma:rifampicin'
2.593425 O b'+2:lemma:chipseq'
2.574956 O b'lemma:soxs'
2.574956 O b'lemma:soxr'
2.572085 O b'lemma:\xcf\x8332'
2.560311 pH b'lemma:.5'
2.560311 pH b'-1:lemma:ph5'
2.558026 Anti b'+1:lemma:antibody'
2.548716 O b'+1:lemma:chip-seq'
2.547807 O b'+2:lemma:polyclonal'
2.547779 O b'postag:DT'
2.547476 Gtype b'lemma:wild-type'
2.542568 Gtype b'lemma:ptac'
2.496299 Temp b'-1:lemma:\xcf\x8332'
2.482714 O b'lemma:condition'
2.450763 Supp b'lemma:dpd'
2.436790 OD b'lemma:0.3'
2.432687 Gtype b'lemma:dfnr'
2.425186 O b'lemma:affyexp'
2.402512 OD b'+1:lemma:stationary'
2.396707 O b'+1:postag:NNP'
2.395525 O b'-1:lemma:Aerobic'
2.390930 O b'lemma:chip'
2.365269 Med b'+2:lemma:with'
2.349317 O b'+1:lemma:condition'
2.347569 Med b'+2:lemma:b1'
2.323852 Gtype b'+1:lemma:flagtag'
2.285051 Air b'-2:postag:SYM'
2.270519 Med b'+1:lemma:0.4'
2.267409 Air b'postag:RB'
2.227138 Med b'lemma:m63'
2.221466 Supp b'-2:lemma:Lrp'
2.211681 Gtype b'lemma:\xce\xb4soxr'
2.198402 Technique b'-1:lemma:IP'
2.191991 Temp b'-1:lemma:43'
2.190945 Technique b'-1:lemma:chip-exo'
2.177040 Technique b'-1:lemma:input'
2.164912 O b'lemma:ompr'
2.159564 Supp b'+2:lemma:for'
2.147969 Gversion b'-2:lemma:build'
2.138399 Supp b'-1:lemma:with'
2.130975 Gversion b'lemma:u00096'
2.130975 Gversion b'+1:lemma:.2'
2.116889 Air b'+2:lemma:L'
2.109271 O b'+1:lemma:anti-fur'
2.094403 Phase b'-2:lemma:phase'
2.088072 Anti b'+2:lemma:antibody'
2.069606 Temp b'-1:lemma:37'
2.062716 OD b'+2:lemma:stationary'
2.062298 Supp b'-2:lemma:supplement'
2.054041 Temp b'lemma:\xc2\xb0c'
2.051199 Supp b'lemma:20'
2.046096 Med b'+1:lemma:g/l'
2.033023 Temp b'lemma:37'
2.031219 Gversion b'lemma:nc'
2.026359 Phase b'-1:lemma:mid-log'
2.022551 Temp b'-2:lemma:\xcf\x8332'
2.021988 O b'postag:CC'
2.012689 Med b'-2:lemma:50'
1.995640 O b'lemma:with'
1.988961 Supp b'-2:postag:VBG'
1.987668 Temp b'+1:lemma:\xc2\xb0c'
1.983838 Med b'lemma:media'
1.966093 Gtype b'+1:lemma:ph5'
1.966093 Gtype b'+2:lemma:.5'
1.929947 O b'+1:lemma:od600'
1.925489 Gtype b'+2:lemma:glucose'
1.923491 Gversion b'-2:lemma:nc'
1.919933 O b'-2:lemma:medium'
1.916487 Technique b'+1:lemma:chip-exo'
1.915937 O b'lemma:at'
1.903350 pH b'+1:postag:CD'
1.881335 O b'-2:lemma:co2'
1.880331 Air b'+2:lemma:37'
1.842022 O b'-1:lemma:l1'
1.835960 Gtype b'lemma:arca8myc'
1.835960 Gtype b'-2:lemma:chip-arca'
1.825949 O b'+1:lemma:sparging'
1.820188 O b'lemma:Fur'
1.816501 Med b'postag:NNP'
1.816366 Temp b'-2:lemma:keep'
1.812523 Substrain b'+1:lemma:phtpg'
1.806914 Med b'lemma:glucose'
1.798594 O b'lemma:for'
1.790149 Supp b'-1:lemma:+'
1.786505 O b'-1:lemma:lb'
Top negative:
-0.056377 O b'+2:lemma:follow'
-0.057834 O b'-2:postag:RB'
-0.062691 O b'lemma:lb'
-0.062694 O b'+2:lemma:co2'
-0.063082 Agit b'postag:NN'
-0.063895 O b'-2:lemma:stir'
-0.066451 O b'+1:lemma:or'
-0.069881 Air b'-2:lemma:or'
-0.071179 Supp b'+1:postag:-RRB-'
-0.073541 O b'+1:lemma:300'
-0.076445 OD b'+2:lemma:~'
-0.078449 O b'-2:lemma:paraquat'
-0.079932 OD b'+1:postag:CC'
-0.080336 OD b'lemma:~'
-0.082164 O b'-1:lemma:until'
-0.087626 O b'+2:lemma:supplement'
-0.089622 O b'lemma:e.'
-0.092349 O b'-1:lemma:1'
-0.093669 O b'lemma:grow'
-0.094841 Med b'+1:postag:IN'
-0.097229 Supp b'-2:postag:IN'
-0.101825 Air b'postag:CD'
-0.103517 Anti b'+1:postag:JJ'
-0.105803 O b'+2:lemma:od600'
-0.108906 O b'lemma:co2'
-0.111524 Supp b'-2:postag:VBN'
-0.118531 Agit b'-1:postag:NN'
-0.120507 O b'-2:lemma:cell'
-0.121204 Air b'lemma:70'
-0.124675 O b'-1:lemma:0.1'
-0.124675 O b'+2:lemma:fecl2'
-0.126624 O b'+2:lemma:for'
-0.128419 Air b'+1:lemma:70'
-0.128789 O b'lemma:150'
-0.128789 O b'+1:lemma:mg/ml'
-0.128789 O b'-2:lemma:concentration'
-0.130352 O b'-2:lemma:nh4cl'
-0.132047 O b'+2:lemma:37'
-0.135046 O b'-1:postag:VBN'
-0.138694 Med b'+2:postag:VBN'
-0.138737 O b'lemma:\xc2\xb0c'
-0.140991 Gtype b'lemma:_'
-0.145854 O b'-1:postag:IN'
-0.145950 O b'-2:lemma:genome'
-0.147428 O b'+2:lemma:iptg'
-0.147810 O b'-1:lemma:cra'
-0.155455 Air b'+2:lemma:70'
-0.156201 Supp b'lemma:and'
-0.158149 O b'+1:postag:JJ'
-0.164480 O b'+1:postag:CD'
-0.172333 OD b'+1:postag:CD'
-0.174063 O b'+2:lemma:.'
-0.174063 O b'+2:postag:.'
-0.178683 Supp b'+2:lemma:-rrb-'
-0.181783 O b'-1:lemma:ml'
-0.184867 O b'-2:postag:VBG'
-0.187294 O b'+2:lemma:anaerobically'
-0.187906 Supp b'-1:postag:NN'
-0.188626 Gtype b'-2:postag:IN'
-0.197726 O b'-1:postag:-LRB-'
-0.198187 O b'-2:lemma:dna'
-0.204690 Air b'+2:postag:IN'
-0.204920 O b'+2:lemma:cell'
-0.225831 O b'lemma:\xce\xb4fur'
-0.230974 O b'-1:lemma:um'
-0.230974 O b'+1:lemma:paraquat'
-0.236573 O b'lemma:of'
-0.240385 O b'-1:lemma:iptg'
-0.244742 Supp b'+2:postag:-RRB-'
-0.251781 O b'-1:lemma:rifampicin'
-0.263047 O b'+1:postag:IN'
-0.263702 O b'+1:postag:VBG'
-0.268568 O b'lemma:20'
-0.274794 O b'+2:lemma:add'
-0.280223 O b'+2:postag:RB'
-0.291400 Supp b'+2:lemma:1'
-0.296141 Phase b'-1:postag:NN'
-0.297378 O b'-2:lemma:dpd'
-0.301496 Phase b'-2:postag:NN'
-0.307882 Supp b'-2:lemma:grow'
-0.308671 O b'-2:lemma:anaerobically'
-0.316370 O b'+1:lemma:mg1655'
-0.317713 O b'-2:lemma:until'
-0.327378 O b'-1:lemma:from'
-0.329280 Med b'-2:lemma:in'
-0.331478 O b'+1:lemma:until'
-0.343943 O b'lemma:k-12'
-0.346692 OD b'+1:postag:NN'
-0.347195 Supp b'-1:postag:VBG'
-0.348433 O b'+1:lemma:fecl2'
-0.348433 O b'-2:lemma:0.1'
-0.358964 O b'-2:lemma::'
-0.362392 pH b'postag:NN'
-0.364550 OD b'lemma:-lrb-'
-0.366840 Anti b'+1:lemma:anti-fur'
-0.372342 O b'-1:lemma:grow'
-0.376200 O b'+2:postag:-RRB-'
-0.383946 O b'lemma:od600'
-0.387364 Supp b'-2:postag:NN'
-0.394053 Anti b'+2:lemma:polyclonal'
-0.398869 Supp b'-1:postag:NNP'
-0.402792 O b'-1:lemma:od600'
-0.405894 O b'postag:RB'
-0.407413 O b'-1:lemma:mid-log'
-0.417577 O b'+2:lemma:fnr'
-0.419538 O b'lemma:dissolve'
-0.419538 O b'+2:lemma:methanol'
-0.420729 O b'-2:postag:DT'
-0.427686 Gtype b'-1:postag:NN'
-0.433305 O b'+1:lemma:_'
-0.440572 O b'+1:lemma:\xc2\xb0c'
-0.441074 Supp b'+1:lemma:rifampicin'
-0.446067 Med b'+1:postag:NN'
-0.453325 Phase b'+1:postag:NN'
-0.453738 O b'-1:lemma:co2'
-0.454368 O b'lemma:0.3'
-0.465224 OD b'-2:postag:IN'
-0.467206 O b'-2:postag:SYM'
-0.469619 Supp b'postag:CC'
-0.480615 O b'lemma:anaerobically'
-0.482560 O b'+2:lemma:reference'
-0.492293 O b'-2:lemma:rpob'
-0.507584 O b'+1:lemma:hour'
-0.517359 O b'lemma:glucose'
-0.518184 O b'-2:lemma:a'
-0.523810 O b'+1:lemma:supplement'
-0.529465 O b'lemma:dpd'
-0.535094 O b'lemma:anaerobic'
-0.535327 Supp b'+1:lemma:acetate'
-0.543209 Supp b'+2:postag:NN'
-0.549417 O b'lemma:aerobically'
-0.550622 O b'+1:lemma:+'
-0.571540 O b'lemma:media'
-0.573484 O b'+2:lemma:antibody'
-0.582564 O b'-1:lemma:dissolve'
-0.582564 O b'+1:lemma:methanol'
-0.591022 O b'lemma:0.1'
-0.601166 Air b'+1:postag:JJ'
-0.618396 O b'-2:lemma:aerobically'
-0.620494 O b'lemma:methanol'
-0.620494 O b'-2:lemma:dissolve'
-0.625501 O b'lemma:0.2'
-0.627314 O b'-1:lemma:ompr'
-0.627416 Temp b'-1:lemma:\xc2\xb0c'
-0.631755 Air b'-1:postag:JJ'
-0.641710 O b'+1:lemma:minimal'
-0.642246 O b'lemma:fecl2'
-0.651512 O b'lemma:rifampicin'
-0.655237 O b'lemma:\xe2\x88\x86'
-0.663186 O b'-1:lemma:sample'
-0.665432 O b'+2:lemma:+'
-0.669192 O b'lemma:phase'
-0.678711 O b'lemma:37'
-0.681855 O b'+1:lemma:g/l'
-0.682703 O b'-1:lemma:37'
-0.698027 O b'+1:postag:NNS'
-0.702726 Supp b'+2:lemma:2'
-0.715445 O b'-1:lemma:0.2'
-0.734463 Med b'-1:postag:NN'
-0.741932 O b'lemma:2h'
-0.741932 O b'-1:lemma:additional'
-0.743025 Supp b'-2:postag:JJ'
-0.769586 O b'+1:lemma:phase'
-0.772776 OD b'-2:postag:JJ'
-0.774462 O b'+2:lemma:medium'
-0.795476 O b'-2:lemma:IP'
-0.799045 O b'-1:lemma:~'
-0.821552 O b'+2:lemma:mid-log'
-0.839684 OD b'postag:-LRB-'
-0.858529 O b'-2:lemma:rifampicin'
-0.862954 O b'-1:postag::'
-0.882732 Supp b'+2:postag:NNS'
-0.895274 Temp b'postag:NN'
-0.947318 Anti b'+2:postag:JJ'
-0.959235 Phase b'-1:postag:JJ'
-0.977788 O b'-1:lemma:rpob'
-0.978443 O b'lemma:mid-log'
-0.988760 O b'-1:postag:VBG'
-1.006314 O b'-2:lemma:50'
-1.041256 O b'-1:lemma:nsrr'
-1.065402 O b'+2:lemma:b'
-1.086805 O b'-2:lemma:supplement'
-1.093802 O b'+1:lemma:cell'
-1.098577 O b'+2:lemma:rifampicin'
-1.120238 O b'-1:lemma:IP'
-1.200121 Med b'-2:postag:VBN'
-1.376159 Air b'postag:NN'
-1.479670 O b'+1:lemma:in'
-1.485332 Phase b'postag:JJ'
-1.570263 O b'lemma:wt'
-1.570821 Supp b'postag:JJ'
-1.809959 Anti b'postag:NNP'
-1.929723 O b'-1:lemma:2'
-2.027837 O b'+1:lemma:at'
-2.145834 O b'-2:lemma:phase'
-2.516491 O b'+1:lemma:2'
-2.632073 Supp b'+2:postag:CD'
-3.112250 O b'+1:lemma:1'
-4.352391 O b'-1:lemma::'
-4.597643 O b'-1:lemma:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.06596113672627639, 'c2': 0.005613954965247502}
best CV score:0.8018183916317536
model size: 0.08M
Flat F1: 0.7935906805413363
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.803 0.860 0.831 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.902 0.742 0.814 62
Anti 0.571 0.444 0.500 9
Strain 1.000 1.000 1.000 1
Gtype 0.865 0.783 0.822 106
Substrain 0.000 0.000 0.000 1
Supp 0.830 0.684 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.867 0.748 0.794 480
Top likely transitions:
Agit -> Agit 6.810185
OD -> OD 6.187635
Temp -> Temp 5.829357
Med -> Med 5.699279
Anti -> Anti 5.664227
Air -> Air 5.035921
Phase -> Phase 4.898803
Gversion -> Gversion 4.861231
O -> O 4.770492
Gtype -> Gtype 4.725413
Supp -> Supp 4.444377
Technique -> Technique 4.039464
pH -> pH 2.490113
O -> Supp 1.657684
Substrain -> Gtype 1.602926
O -> Technique 1.346731
Gtype -> Supp 1.341693
O -> Gtype 1.213701
O -> Temp 0.759700
Technique -> Air 0.709582
Air -> O 0.679733
O -> Anti 0.628958
Gtype -> pH 0.381737
OD -> Phase 0.217695
Gtype -> Air 0.206619
O -> Gversion 0.164188
O -> Med 0.158358
Med -> O 0.068822
O -> Strain 0.037849
O -> Phase 0.019143
Temp -> O 0.000267
Supp -> Anti -0.000426
Gversion -> O -0.017952
Anti -> OD -0.023479
Air -> Temp -0.064389
Strain -> O -0.068951
Phase -> Air -0.097477
Temp -> Med -0.130697
Supp -> Gversion -0.132660
Gtype -> Gversion -0.152489
Supp -> Temp -0.180122
O -> OD -0.195607
Anti -> O -0.203415
Supp -> Technique -0.213129
Supp -> OD -0.295829
Technique -> pH -0.297966
Air -> Phase -0.309467
Gtype -> Med -0.371622
Phase -> O -0.401213
Technique -> O -0.444318
Top unlikely transitions:
Air -> O 0.679733
O -> Anti 0.628958
Gtype -> pH 0.381737
OD -> Phase 0.217695
Gtype -> Air 0.206619
O -> Gversion 0.164188
O -> Med 0.158358
Med -> O 0.068822
O -> Strain 0.037849
O -> Phase 0.019143
Temp -> O 0.000267
Supp -> Anti -0.000426
Gversion -> O -0.017952
Anti -> OD -0.023479
Air -> Temp -0.064389
Strain -> O -0.068951
Phase -> Air -0.097477
Temp -> Med -0.130697
Supp -> Gversion -0.132660
Gtype -> Gversion -0.152489
Supp -> Temp -0.180122
O -> OD -0.195607
Anti -> O -0.203415
Supp -> Technique -0.213129
Supp -> OD -0.295829
Technique -> pH -0.297966
Air -> Phase -0.309467
Gtype -> Med -0.371622
Phase -> O -0.401213
Technique -> O -0.444318
OD -> Gtype -0.458964
Air -> Med -0.484691
Supp -> O -0.486623
OD -> Air -0.565502
Technique -> OD -0.598899
Technique -> Gtype -0.612194
Air -> OD -0.617091
Supp -> Air -0.672649
Gtype -> O -0.732894
OD -> Med -0.783942
O -> Air -0.841156
Gtype -> Anti -0.881159
Air -> Supp -0.895933
Agit -> O -0.971277
Gtype -> OD -1.088787
OD -> O -1.113905
Supp -> Med -1.253584
Substrain -> O -1.723672
Phase -> OD -2.084990
Med -> Supp -2.134929
Top positive:
9.803739 Supp b'lemma:Iron'
9.580173 O b'lemma:_'
8.154870 O b'lemma:1'
7.967307 Phase b'lemma:stationary'
7.817188 Technique b'lemma:ChIP-exo'
7.499968 Air b'lemma:anaerobic'
7.345897 Supp b'lemma:nitrate'
7.255329 Med b'lemma:MOPS'
7.049720 Strain b'lemma:k-12'
6.904427 Air b'lemma:aerobic'
6.841300 O b'lemma:rpob'
6.768590 O b'lemma:2'
6.737063 Technique b'lemma:chipseq'
6.360291 O b'-1:lemma:tag'
6.349470 Supp b'lemma:pq'
6.300045 Gtype b'lemma:\xce\xb4cra'
6.186808 O b'lemma:3'
6.179446 O b'-1:lemma:ChIP-exo'
6.005364 Air b'-1:lemma:ChIP-Seq'
5.920885 Gversion b'lemma:asm584v2'
5.896974 Air b'lemma:Aerobic'
5.722661 Gtype b'lemma:flag-tag'
5.722661 Gtype b'-1:lemma:c-terminal'
5.531927 OD b'lemma:od600'
5.514469 Med b'lemma:LB'
5.500899 O b'lemma:Cra'
5.490395 O b'lemma:rep1'
5.429405 Gtype b'lemma:arca8myc'
5.319893 Substrain b'lemma:mg1655'
5.281725 O b'lemma:rep2'
5.261435 O b'lemma:Custom'
5.225717 Supp b'+1:lemma:\xc2\xb5m'
5.209658 Gtype b'lemma:delta-arca'
5.179292 Gtype b'lemma:type'
5.158663 O b'lemma:b'
5.112757 Supp b'lemma:nh4cl'
5.101092 O b'lemma:rep3'
5.039392 OD b'lemma:od450'
5.020295 Med b'lemma:lb'
5.002221 O b'-1:lemma:0.3-0.35'
4.965187 Supp b'lemma:glucose'
4.956435 Gtype b'lemma:fnr8myc'
4.954144 O b'postag::'
4.945827 Technique b'lemma:rna-seq'
4.916169 OD b'+1:lemma:stationary'
4.892519 Gtype b'lemma:wt'
4.870877 Supp b'lemma:Fe'
4.839544 Gtype b'+1:lemma:type'
4.839112 O b'lemma:a'
4.816421 Supp b'lemma:acetate'
4.800826 O b'lemma:for'
4.795011 O b'-1:lemma:Aerobic'
4.749012 O b'lemma:\xcf\x8332'
4.703876 Anti b'lemma:none'
4.687916 Gversion b'lemma:nc'
4.679745 Gtype b'-1:lemma:\xe2\x88\x86'
4.658460 O b'postag:IN'
4.499779 Gtype b'lemma:delta-fnr'
4.488425 Supp b'lemma:rifampicin'
4.420970 Technique b'lemma:ChIP-Seq'
4.383863 O b'lemma:.'
4.383863 O b'postag:.'
4.370053 O b'+1:lemma:od600'
4.356499 O b'-1:lemma:glucose'
4.332569 Anti b'lemma:seqa'
4.328668 Supp b'lemma:no3'
4.297407 Med b'+1:lemma:0.4'
4.276695 Supp b'-1:lemma:Cra'
4.206385 Strain b'+1:lemma:substr'
4.200724 Gtype b'lemma:\xe2\x88\x86'
4.199179 Phase b'lemma:mid-log'
4.192968 Gtype b'lemma:\xce\xb4fur'
4.176687 Technique b'lemma:rnaseq'
4.174399 Technique b'lemma:chip-seq'
4.163064 O b'-1:lemma:anaerobic'
4.079966 Supp b'lemma:dpd'
4.071291 O b'lemma:-'
4.042539 Gtype b'lemma:nsrr'
4.040900 O b'+1:postag:RB'
3.961200 Anti b'lemma:anti-rpos'
3.949739 Supp b'lemma:fructose'
3.943560 Supp b'lemma:arginine'
3.920546 O b'lemma:with'
3.906842 O b'lemma:or'
3.867183 Gversion b'lemma:000913'
3.852346 Supp b'+1:lemma:1'
3.844501 Vess b'lemma:flask'
3.844501 Vess b'-1:lemma:warm'
3.833652 O b'lemma:CEL'
3.821792 Anti b'lemma:anti-myc'
3.754133 Gversion b'-1:lemma:nc'
3.739933 pH b'lemma:ph5'
3.739933 pH b'+1:lemma:.5'
3.707305 Temp b'-1:lemma:\xcf\x8332'
3.705406 O b'lemma:chip'
3.697004 O b'-1:lemma:type'
3.688398 Med b'lemma:m63'
3.683435 Supp b'+1:lemma:hour'
3.597164 O b'postag:VBN'
3.578566 Gversion b'lemma:chip-seq'
3.568740 O b'lemma:s'
3.558200 Temp b'-1:lemma:sample'
3.545060 O b'+1:lemma:o.d.'
3.516070 Supp b'-1:lemma:+'
3.483554 Gtype b'lemma:\xce\xb4ompr'
3.483503 Gtype b'+1:lemma:with'
3.459746 Supp b'lemma:nacl'
3.441734 O b'-1:lemma:lb'
3.409536 Air b'lemma:Anaerobic'
3.404389 Gtype b'+1:lemma:ph5'
3.361396 Technique b'+1:lemma:chip-exo'
3.328422 Gtype b'lemma:\xce\xb4soxs'
3.317686 Med b'+1:lemma:2.0'
3.301476 Gversion b'lemma:u00096'
3.301476 Gversion b'+1:lemma:.2'
3.286668 O b'lemma:affyexp'
3.280195 Air b'lemma:anaerobically'
3.258177 Gtype b'-1:lemma:ptac'
3.257208 O b'lemma:ompr'
3.255510 Gtype b'+1:lemma:pq'
3.246680 Anti b'+1:lemma:antibody'
3.236124 O b'lemma:oxyr'
3.209122 Supp b'+1:lemma:2'
3.197656 Med b'+1:lemma:minimal'
3.196597 Phase b'-1:lemma:until'
3.189945 Gtype b'lemma:wild-type'
3.181288 O b'-1:lemma:0.3'
3.170002 Temp b'lemma:\xc2\xb0c'
3.161695 O b'+1:lemma:pq'
3.159682 Supp b'lemma:Leu'
3.133292 Gversion b'lemma:.2'
3.133292 Gversion b'-1:lemma:u00096'
3.126040 O b'lemma:2-3'
3.125880 Technique b'-1:lemma:IP'
3.112267 O b'-1:lemma:stpa'
3.103375 Gtype b'lemma:ptac'
3.101224 Gtype b'+1:lemma:flagtag'
3.060100 Temp b'-1:lemma:37'
3.057323 Supp b'+1:lemma:_'
3.050729 O b'lemma:Lrp'
3.035951 Gtype b'lemma:pk4854'
3.030223 O b'lemma:chip-arca'
3.008946 OD b'-1:lemma:~'
2.947889 O b'lemma:argr'
2.944505 Technique b'-1:lemma:chip-exo'
2.933771 O b'+1:lemma:chip-seq'
2.918186 Gtype b'-1:lemma:rpob'
2.896628 Phase b'+1:lemma:for'
2.896158 O b'lemma:purr'
2.893920 Gtype b'lemma:WT'
2.885542 Med b'-1:lemma:ml'
2.868396 O b'-1:lemma:l1'
2.864588 O b'lemma:at'
2.861849 Gtype b'lemma:deltaseqa'
2.861849 Gtype b'-1:lemma:old'
2.861515 Air b'postag:RB'
2.860863 Technique b'-1:lemma:input'
2.852420 Air b'lemma:anerobically'
2.847369 O b'-1:lemma:\xc2\xb0c'
2.838846 Substrain b'+1:lemma:phtpg'
2.838740 Temp b'-1:lemma:43'
2.808074 OD b'lemma:phase'
2.787238 Med b'lemma:L'
2.787238 Med b'+1:lemma:broth'
2.770533 Gtype b'+1:lemma:aerobic'
2.754834 O b'-1:lemma:dpd'
2.711280 Gtype b'lemma:\xce\xb4soxr'
2.708114 Med b'lemma:glucose'
2.683398 O b'-1:lemma:media'
2.661239 O b'+1:postag:NNP'
2.646068 Gtype b'lemma:\xce\xb4oxyr'
2.622418 O b'lemma:soxs'
2.622418 O b'lemma:soxr'
2.602038 Supp b'+1:lemma:Deficient'
2.600846 Temp b'lemma:43'
2.597103 O b'postag:DT'
2.594739 Supp b'lemma:iptg'
2.565098 OD b'lemma:0.3'
2.562324 Supp b'lemma:Adenine'
2.524716 pH b'lemma:.5'
2.524716 pH b'-1:lemma:ph5'
2.490454 Air b'+1:lemma:at'
2.468286 O b'lemma:Fur'
2.464129 Supp b'lemma:methanol'
2.445015 Air b'-1:lemma:-'
2.439688 Med b'+1:lemma:contain'
2.436952 Med b'-1:lemma:LB'
2.431687 Supp b'-1:lemma:\xc2\xb5m'
2.424727 O b'lemma:culture'
2.410632 O b'lemma:chip-fnr'
2.399552 O b'+1:lemma:mid-log'
2.380228 O b'lemma:condition'
2.369416 Supp b'lemma:20'
2.332730 Technique b'+1:lemma:rna-seq'
2.331984 Gtype b'lemma:dfnr'
2.298119 O b'-1:lemma:min'
2.251434 Gtype b'lemma:soxs-8myc'
2.251434 Gtype b'lemma:soxr-8myc'
2.236660 O b'+1:lemma:sparging'
2.235760 Gtype b'-1:lemma:_'
Top negative:
0.000004 Gtype b'+1:lemma:carrying'
-0.000024 Gtype b'+1:lemma:-'
-0.000044 Med b'+1:lemma:media'
-0.000057 O b'-1:lemma:g/l'
-0.000062 Gtype b'+1:postag:IN'
-0.000133 Gtype b'+1:lemma:cra'
-0.000220 OD b'+1:postag:NNS'
-0.000334 O b'lemma:pahse'
-0.000367 O b'+1:lemma:pahse'
-0.000370 O b'+1:lemma:antibody'
-0.000463 Gtype b'+1:lemma:2'
-0.000888 O b'+1:lemma:95'
-0.001725 O b'+1:lemma:grow'
-0.001924 O b'-1:lemma:70'
-0.002590 O b'-1:lemma:at'
-0.002609 Supp b'+1:lemma:glucose'
-0.002737 Temp b'-1:lemma:\xc2\xb0c'
-0.003250 O b'+1:lemma:0.4'
-0.003835 O b'-1:lemma:the'
-0.004365 Supp b'lemma:min'
-0.004404 Air b'+1:postag:NN'
-0.004876 Gtype b'-1:postag:SYM'
-0.007478 Air b'-1:lemma:anaerobically'
-0.008825 O b'lemma:25'
-0.010133 O b'-1:lemma:\xe2\x88\x86'
-0.010800 O b'+1:lemma:~'
-0.011018 O b'-1:lemma:25'
-0.012738 OD b'+1:lemma:0.4'
-0.013297 O b'-1:lemma:mm'
-0.013330 O b'+1:lemma:25'
-0.017236 O b'lemma:medium'
-0.017258 O b'+1:lemma:co2'
-0.021642 O b'-1:lemma:minimal'
-0.022529 O b'lemma:\xe2\x88\x86'
-0.023207 OD b'+1:postag:CD'
-0.024275 O b'+1:lemma:culture'
-0.027000 Med b'+1:postag:NNS'
-0.028443 O b'-1:postag:IN'
-0.028871 OD b'lemma:~'
-0.029400 O b'-1:lemma:-lrb-'
-0.029957 O b'-1:postag:VBN'
-0.031814 OD b'+1:lemma:-lrb-'
-0.036730 O b'lemma:\xc2\xb0c'
-0.040489 O b'+1:lemma:shake'
-0.049352 O b'lemma:grow'
-0.049870 Gtype b'-1:postag:CD'
-0.051592 O b'+1:lemma:\xc2\xb0c'
-0.058064 O b'+1:lemma:5'
-0.060533 Supp b'-1:postag:NNP'
-0.066506 O b'lemma:m63'
-0.067322 O b'lemma:purify'
-0.073479 O b'-1:lemma:1'
-0.078629 OD b'+1:postag:-LRB-'
-0.088409 OD b'-1:postag:DT'
-0.089657 O b'+1:lemma:300'
-0.090027 O b'lemma:lb'
-0.092005 Air b'-1:postag:CC'
-0.094016 O b'-1:lemma:e.'
-0.094979 O b'-1:postag:-LRB-'
-0.095499 O b'+1:lemma:-rrb-'
-0.096558 Gversion b'-1:postag:NN'
-0.102714 O b'-1:lemma:fresh'
-0.102983 Phase b'+1:postag:NN'
-0.104669 Supp b'lemma:and'
-0.106096 Phase b'-1:lemma:at'
-0.110455 O b'+1:lemma:minimal'
-0.110526 Supp b'+1:postag:IN'
-0.113970 Technique b'-1:lemma::'
-0.119878 O b'-1:lemma:iptg'
-0.125836 O b'+1:lemma:mm'
-0.127210 O b'+1:lemma:rep1'
-0.132494 Gtype b'-1:postag:NN'
-0.133598 Vess b'postag:NN'
-0.137884 O b'lemma:o2'
-0.140906 O b'+1:lemma:o2'
-0.143319 O b'-1:lemma:n2'
-0.147451 O b'-1:lemma:o2'
-0.153465 Anti b'+1:postag:JJ'
-0.160555 O b'lemma:mg1655'
-0.160730 O b'-1:lemma:um'
-0.160730 O b'+1:lemma:paraquat'
-0.168104 O b'lemma:minimal'
-0.171270 O b'-1:lemma:of'
-0.172228 O b'-1:lemma:from'
-0.175329 O b'lemma:e.'
-0.178475 O b'-1:lemma:30'
-0.179463 O b'-1:lemma:0.1'
-0.182901 OD b'postag:JJ'
-0.185549 Med b'postag:CD'
-0.192111 Air b'postag:CD'
-0.211750 Supp b'-1:postag:NN'
-0.223595 O b'lemma:co2'
-0.226618 Gtype b'postag:CD'
-0.231536 Med b'-1:postag:NN'
-0.234723 O b'lemma:30'
-0.248832 O b'lemma:aerobically'
-0.249281 Agit b'postag:NN'
-0.250953 O b'lemma:n2'
-0.270863 O b'+1:lemma:phase'
-0.306219 Strain b'+1:postag:NN'
-0.308359 O b'-1:lemma:od600'
-0.323236 O b'+1:postag:IN'
-0.329990 O b'lemma:anaerobic'
-0.339291 O b'lemma:od600'
-0.345297 O b'+1:lemma:.'
-0.345297 O b'+1:postag:.'
-0.345455 Med b'+1:postag:IN'
-0.346323 O b'-1:lemma:rifampicin'
-0.350930 Air b'-1:lemma:or'
-0.351942 O b'-1:lemma:cra'
-0.357748 Gtype b'lemma:delta'
-0.359268 O b'lemma:phase'
-0.360855 O b'-1:lemma:~'
-0.363783 O b'postag:RB'
-0.363829 OD b'+1:lemma:and'
-0.388025 Supp b'+1:postag:VBN'
-0.399712 O b'+1:lemma:until'
-0.413829 O b'+1:postag:NNS'
-0.416759 OD b'+1:postag:CC'
-0.419943 O b'-1:lemma:ml'
-0.423733 O b'+1:postag:-RRB-'
-0.431094 O b'-1:lemma:grow'
-0.438662 O b'lemma:150'
-0.438662 O b'+1:lemma:mg/ml'
-0.438787 O b'+1:lemma:0.3'
-0.450796 Temp b'postag:JJ'
-0.452037 O b'lemma:\xce\xb4fur'
-0.453882 Air b'-1:postag:JJ'
-0.460132 O b'+1:lemma:arginine'
-0.520629 O b'postag:VBP'
-0.525807 O b'-1:lemma:0.2'
-0.531833 O b'lemma:dissolve'
-0.544854 Phase b'-1:postag:NN'
-0.548102 Anti b'+1:lemma:anti-fur'
-0.553501 O b'lemma:0.3'
-0.554123 Technique b'-1:postag::'
-0.564730 O b'+1:lemma:%'
-0.566274 O b'-1:lemma:mid-log'
-0.595934 O b'+1:lemma:cell'
-0.624651 O b'+1:lemma:c'
-0.627312 Temp b'+1:lemma:to'
-0.627312 Temp b'+1:postag:TO'
-0.629337 Med b'+1:postag:NN'
-0.634742 O b'+1:lemma:_'
-0.635820 O b'lemma:dpd'
-0.688829 OD b'lemma:-lrb-'
-0.690594 OD b'+1:postag:NN'
-0.702445 O b'lemma:20'
-0.763984 OD b'postag:-LRB-'
-0.768100 O b'lemma:media'
-0.778612 Gversion b'+1:postag:NN'
-0.780471 O b'lemma:anaerobically'
-0.786127 O b'-1:postag:VBG'
-0.824784 Med b'-1:postag:IN'
-0.845775 Supp b'+1:lemma:acetate'
-0.846041 O b'-1:lemma:co2'
-0.852351 pH b'postag:NN'
-0.867978 O b'+1:lemma:fecl2'
-0.888618 Supp b'+1:lemma:rifampicin'
-0.923659 Supp b'postag:CC'
-0.924869 O b'lemma:of'
-0.956241 Temp b'postag:NN'
-0.991767 O b'-1:lemma:sample'
-1.051712 O b'-1:lemma:dissolve'
-1.051712 O b'+1:lemma:methanol'
-1.119586 O b'+1:lemma:+'
-1.132902 O b'-1:lemma:37'
-1.140977 Phase b'-1:postag:JJ'
-1.157470 O b'lemma:fecl2'
-1.187930 O b'lemma:0.2'
-1.196177 O b'+1:lemma:supplement'
-1.198543 O b'lemma:2h'
-1.198543 O b'-1:lemma:additional'
-1.211522 O b'+1:lemma:g/l'
-1.224455 O b'+1:lemma:at'
-1.233557 O b'-1:lemma:rpob'
-1.246376 O b'lemma:0.1'
-1.265258 O b'-1:postag::'
-1.266857 O b'lemma:37'
-1.276968 Air b'+1:postag:JJ'
-1.367143 O b'+1:postag:VBG'
-1.372161 O b'lemma:rifampicin'
-1.380156 O b'lemma:mid-log'
-1.408891 O b'+1:lemma:hour'
-1.503066 O b'lemma:wt'
-1.654992 Anti b'postag:NNP'
-1.656418 Supp b'-1:lemma:%'
-1.743144 Phase b'postag:JJ'
-1.805708 O b'-1:lemma:ompr'
-1.821985 O b'+1:lemma:in'
-1.835729 O b'-1:lemma:nsrr'
-1.914064 O b'lemma:methanol'
-1.942273 O b'-1:lemma:IP'
-2.145235 Air b'postag:NN'
-2.312190 O b'-1:lemma:2'
-2.393207 Supp b'postag:JJ'
-2.809437 O b'+1:lemma:2'
-3.166822 O b'+1:lemma:1'
-3.568530 O b'-1:lemma:_'
-3.975976 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.01750591736573677, 'c2': 0.02307723566043045}
best CV score:0.7965019925648547
model size: 0.10M
best params:{'c1': 0.3584617458365783, 'c2': 0.005702731733010388}
best CV score:0.7892724734479645
model size: 0.05M
Flat F1: 0.7968324300802168
Flat F1: 0.7770000497122165
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.897 0.912 0.904 57
Med 0.800 0.842 0.821 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.667 0.800 9
Phase 1.000 0.895 0.944 19
Air 0.780 0.742 0.760 62
Anti 0.500 0.444 0.471 9
Strain 1.000 1.000 1.000 1
Gtype 0.862 0.764 0.810 106
Gtype 0.828 0.774 0.800 106
Substrain 0.000 0.000 0.000 1
Supp 0.865 0.662 0.750 136
Supp 0.803 0.691 0.743 136
Gversion 0.000 0.000 0.000 0
avg / total 0.876 0.748 0.797 480
avg / total 0.834 0.744 0.777 480
Top likely transitions:
OD -> OD 5.786764
Agit -> Agit 5.337876
Anti -> Anti 5.174874
Temp -> Temp 5.088685
Med -> Med 5.002944
Air -> Air 4.877267
O -> O 4.715817
Gversion -> Gversion 4.473906
Phase -> Phase 4.357763
Gtype -> Gtype 4.242273
Supp -> Supp 4.009897
Technique -> Technique 3.021233
pH -> pH 2.548336
Substrain -> Gtype 1.971828
O -> Supp 1.641966
Gtype -> Supp 1.637091
Air -> O 1.145928
O -> Gtype 1.141727
Technique -> Air 1.068808
Gtype -> pH 0.990954
O -> Technique 0.980217
O -> Temp 0.771371
O -> Anti 0.605031
Gtype -> Air 0.434959
Med -> O 0.223888
O -> Strain 0.200811
O -> pH 0.175383
O -> Gversion 0.140227
OD -> Phase 0.052262
O -> Vess 0.045108
Temp -> O 0.034423
Phase -> O 0.018387
Strain -> O -0.000112
Anti -> pH -0.000851
Strain -> OD -0.002202
O -> Substrain -0.003970
Technique -> Phase -0.027678
Med -> pH -0.028490
Anti -> Phase -0.030227
Gtype -> Strain -0.031833
pH -> OD -0.041636
Air -> Anti -0.042531
OD -> pH -0.045135
pH -> Air -0.051415
Anti -> O -0.054882
Med -> OD -0.055592
O -> Med -0.064478
Med -> Temp -0.070415
Phase -> Air -0.071257
Supp -> Agit -0.072692
OD -> OD 6.207517
Agit -> Agit 6.144930
Med -> Med 5.284052
Anti -> Anti 5.278606
Temp -> Temp 5.208476
Air -> Air 4.805077
O -> O 4.440768
Gtype -> Gtype 4.358978
Gversion -> Gversion 4.158001
Phase -> Phase 4.098995
Technique -> Technique 4.090708
Supp -> Supp 4.012852
O -> Supp 2.068480
Gtype -> Supp 1.861974
pH -> pH 1.651755
O -> Technique 1.423652
Air -> O 1.413050
O -> Gtype 1.235571
O -> Anti 1.042265
Substrain -> Gtype 0.832252
Med -> O 0.806110
O -> Temp 0.755910
Temp -> O 0.540542
Technique -> Air 0.454746
O -> Gversion 0.402020
Supp -> O 0.347334
O -> Med 0.334881
OD -> Phase 0.330860
Phase -> O 0.243437
Gtype -> pH 0.053400
O -> OD 0.004380
O -> Phase 0.002932
Technique -> O -0.000992
Gtype -> Med -0.027797
Supp -> Air -0.028399
Gtype -> O -0.156530
OD -> O -0.230762
O -> Air -0.339608
Gtype -> OD -0.384678
Agit -> O -0.523470
Supp -> Med -0.770936
Med -> Supp -0.862383
Phase -> OD -0.954560
Substrain -> O -1.080979
Top unlikely transitions:
O -> Agit -0.317813
Gversion -> Gtype -0.346160
Anti -> Gtype -0.379001
Gversion -> Supp -0.395995
Technique -> O -0.407315
Technique -> Gversion -0.411287
Air -> Gtype -0.414228
Gversion -> Technique -0.423101
Supp -> pH -0.449062
Air -> Temp -0.454318
OD -> Temp -0.462022
OD -> Technique -0.528407
Gtype -> Phase -0.537062
OD -> Anti -0.541206
Gversion -> Air -0.555674
Supp -> Temp -0.581411
Supp -> Phase -0.581776
Technique -> Supp -0.590399
Gtype -> Technique -0.620634
OD -> Supp -0.644073
Med -> Air -0.679744
Temp -> Med -0.687449
OD -> Med -0.717084
Anti -> OD -0.770834
Supp -> Anti -0.804922
Air -> Supp -0.806945
Gtype -> Gversion -0.811241
Supp -> OD -0.862585
Supp -> Gversion -0.867304
Phase -> Technique -0.873833
Agit -> O -0.910378
Air -> Med -0.936107
Gtype -> Med -0.971156
Supp -> Technique -0.979631
Supp -> Gtype -0.998503
OD -> Gtype -1.001151
Supp -> Air -1.002273
Gtype -> Anti -1.098941
OD -> Air -1.189877
O -> Air -1.194520
OD -> O -1.238899
Air -> OD -1.240827
Gtype -> OD -1.288759
Substrain -> O -1.351729
Technique -> pH -1.436208
Technique -> Gtype -1.565301
Supp -> Med -1.571460
Technique -> OD -1.655463
Med -> Supp -1.791934
Phase -> OD -2.395487
OD -> OD 6.207517
Agit -> Agit 6.144930
Med -> Med 5.284052
Anti -> Anti 5.278606
Temp -> Temp 5.208476
Air -> Air 4.805077
O -> O 4.440768
Gtype -> Gtype 4.358978
Gversion -> Gversion 4.158001
Phase -> Phase 4.098995
Technique -> Technique 4.090708
Supp -> Supp 4.012852
O -> Supp 2.068480
Gtype -> Supp 1.861974
pH -> pH 1.651755
O -> Technique 1.423652
Air -> O 1.413050
O -> Gtype 1.235571
O -> Anti 1.042265
Substrain -> Gtype 0.832252
Med -> O 0.806110
O -> Temp 0.755910
Temp -> O 0.540542
Technique -> Air 0.454746
O -> Gversion 0.402020
Supp -> O 0.347334
O -> Med 0.334881
OD -> Phase 0.330860
Phase -> O 0.243437
Gtype -> pH 0.053400
O -> OD 0.004380
O -> Phase 0.002932
Technique -> O -0.000992
Gtype -> Med -0.027797
Supp -> Air -0.028399
Gtype -> O -0.156530
OD -> O -0.230762
O -> Air -0.339608
Gtype -> OD -0.384678
Agit -> O -0.523470
Supp -> Med -0.770936
Med -> Supp -0.862383
Phase -> OD -0.954560
Substrain -> O -1.080979
Top positive:
7.777505 O b'lemma:_'
6.605877 O b'lemma:1'
5.933184 Phase b'lemma:stationary'
5.921751 Air b'lemma:anaerobic'
5.663542 Supp b'lemma:Iron'
5.628841 O b'lemma:2'
5.570604 Strain b'lemma:k-12'
5.357728 Air b'lemma:aerobic'
5.308359 Technique b'lemma:chipseq'
5.243195 Technique b'lemma:ChIP-exo'
5.146328 O b'lemma:3'
5.113544 O b'lemma:rpob'
4.972436 Supp b'lemma:pq'
4.736752 O b'-1:lemma:tag'
4.683084 Gtype b'lemma:\xce\xb4cra'
4.682011 Phase b'lemma:mid-log'
4.676054 Gversion b'lemma:asm584v2'
4.661754 Supp b'lemma:nh4cl'
4.645082 Gtype b'lemma:flag-tag'
4.645082 Gtype b'-1:lemma:c-terminal'
4.640572 O b'lemma:rep1'
4.613649 O b'lemma:Cra'
4.546591 Gtype b'lemma:arca8myc'
4.537870 O b'postag:IN'
4.531129 Supp b'lemma:glucose'
4.528260 Air b'-1:lemma:ChIP-Seq'
4.460701 O b'lemma:rep2'
4.331423 Med b'lemma:MOPS'
4.320826 Gtype b'lemma:wt'
4.314650 Supp b'lemma:nitrate'
4.296372 O b'lemma:rep3'
4.285293 Substrain b'lemma:mg1655'
4.240354 Supp b'lemma:acetate'
4.111263 Med b'lemma:lb'
4.087796 Gtype b'lemma:delta-arca'
4.036491 O b'+1:postag:RB'
4.022073 Supp b'+1:lemma:\xc2\xb5m'
4.010145 O b'lemma:b'
4.010092 Supp b'lemma:no3'
3.996538 Med b'lemma:LB'
3.996393 Gtype b'-1:lemma:\xe2\x88\x86'
3.982442 Technique b'lemma:rna-seq'
3.957894 Air b'lemma:Aerobic'
3.935017 O b'lemma:a'
3.803123 OD b'lemma:od600'
3.801977 Anti b'lemma:none'
3.786775 Gtype b'lemma:fnr8myc'
3.769938 O b'lemma:.'
3.769938 O b'postag:.'
3.769927 Supp b'lemma:Fe'
3.764066 Technique b'lemma:chip-seq'
3.735366 O b'postag::'
3.685306 O b'lemma:CEL'
3.645917 O b'lemma:\xcf\x8332'
3.642265 O b'-1:lemma:Aerobic'
3.634484 Anti b'lemma:seqa'
3.544891 Technique b'lemma:rnaseq'
3.525311 Supp b'+1:lemma:Deficient'
3.521610 OD b'lemma:od450'
3.519361 O b'-1:lemma:ChIP-exo'
3.516252 O b'lemma:Custom'
3.464219 O b'postag:VBN'
3.463491 Supp b'+1:lemma:1'
3.450572 Supp b'lemma:rifampicin'
3.427503 Med b'+1:lemma:0.4'
3.379916 Gtype b'lemma:delta-fnr'
3.378105 Supp b'-1:lemma:Cra'
3.351155 Gtype b'lemma:\xe2\x88\x86'
3.343450 Gversion b'lemma:chip-seq'
3.314924 Supp b'lemma:fructose'
3.282214 Supp b'lemma:dpd'
3.262950 Gtype b'+1:lemma:with'
3.253726 O b'lemma:-'
3.214173 O b'+1:lemma:od600'
3.187644 O b'-1:lemma:0.3-0.35'
3.182055 Gtype b'lemma:type'
3.172972 Supp b'lemma:arginine'
3.120594 Gtype b'lemma:\xce\xb4fur'
3.117794 Gversion b'lemma:nc'
3.109528 O b'-1:lemma:glucose'
3.081979 O b'+1:lemma:anti-fur'
3.077641 Gtype b'+1:lemma:type'
3.064731 Supp b'+1:lemma:2'
3.053268 Vess b'lemma:flask'
3.053268 Vess b'-1:lemma:warm'
3.046425 O b'-1:lemma:anaerobic'
3.038756 pH b'lemma:ph5'
3.038756 pH b'+1:lemma:.5'
3.027884 Med b'lemma:m63'
3.018439 Gtype b'lemma:wild-type'
3.002251 O b'lemma:chip-arca'
3.002149 Anti b'lemma:anti-myc'
3.001018 Gtype b'lemma:nsrr'
3.000941 O b'lemma:affyexp'
3.000850 Air b'postag:RB'
2.987234 O b'-1:lemma:lb'
2.981372 Strain b'+1:lemma:substr'
2.977968 O b'lemma:with'
2.970913 O b'lemma:s'
2.954955 O b'lemma:oxyr'
2.919696 Technique b'lemma:ChIP-Seq'
2.911598 Gtype b'lemma:WT'
2.907151 Temp b'lemma:\xc2\xb0c'
2.882096 Gtype b'lemma:\xce\xb4soxs'
2.828303 O b'-1:lemma:stpa'
2.815555 O b'lemma:argr'
2.805344 Med b'+1:lemma:minimal'
2.776817 Gversion b'lemma:.2'
2.776817 Gversion b'-1:lemma:u00096'
2.765075 O b'lemma:at'
2.753642 Supp b'-1:lemma:+'
2.743827 Med b'+1:lemma:2.0'
2.731390 O b'lemma:ompr'
2.715846 O b'+1:lemma:pq'
2.713993 Gversion b'lemma:u00096'
2.713993 Gversion b'+1:lemma:.2'
2.703704 Air b'lemma:Anaerobic'
2.702255 Gtype b'lemma:\xce\xb4ompr'
2.686740 Supp b'+1:lemma:_'
2.677806 Gtype b'-1:lemma:ptac'
2.662879 Phase b'+1:lemma:for'
2.660845 O b'lemma:purr'
2.633400 Gversion b'-1:lemma:nc'
2.610705 Med b'-1:lemma:ml'
2.610364 Supp b'lemma:nacl'
2.598932 Technique b'-1:lemma:IP'
2.587524 O b'lemma:or'
2.572768 Supp b'lemma:Leu'
2.557048 Gversion b'lemma:000913'
2.535138 Gtype b'+1:lemma:flagtag'
2.529124 O b'postag:CC'
2.528151 Gtype b'+1:lemma:pq'
2.519454 OD b'+1:lemma:stationary'
2.517078 Gtype b'+1:lemma:aerobic'
2.508910 O b'lemma:Lrp'
2.508428 Gtype b'-1:lemma:rpob'
2.502749 Temp b'lemma:43'
2.501837 Air b'lemma:anaerobically'
2.500161 Gtype b'lemma:ptac'
2.489806 O b'+1:lemma:o.d.'
2.489002 O b'-1:lemma:type'
2.486890 Gtype b'lemma:pk4854'
2.485914 O b'lemma:for'
2.480050 O b'postag:SYM'
2.476780 Supp b'+1:lemma:hour'
2.458558 Air b'-1:lemma:-'
2.455765 Anti b'lemma:anti-rpos'
2.449385 Supp b'lemma:Adenine'
2.445239 O b'lemma:Fur'
2.444393 O b'lemma:soxs'
2.444393 O b'lemma:soxr'
2.434249 Temp b'-1:lemma:37'
2.428845 Gtype b'lemma:deltaseqa'
2.428845 Gtype b'-1:lemma:old'
2.414384 Anti b'+1:lemma:antibody'
2.405965 O b'lemma:2-3'
2.403476 Temp b'-1:lemma:43'
2.394168 Air b'lemma:anerobically'
2.391084 Substrain b'+1:lemma:phtpg'
2.390362 O b'+1:lemma:chip-seq'
2.364093 O b'lemma:chip'
2.344688 pH b'+1:postag:CD'
2.333775 Med b'postag:NNP'
2.308157 Supp b'lemma:iptg'
2.301961 O b'+1:lemma:43'
2.296886 Gtype b'lemma:\xce\xb4oxyr'
2.293633 O b'lemma:chip-fnr'
2.288275 Med b'+1:lemma:+'
2.287838 Technique b'-1:lemma:input'
2.284745 Gtype b'+1:lemma:ph5'
2.282924 O b'+1:lemma:sparging'
2.273731 Technique b'+1:lemma:chip-exo'
2.256890 Gtype b'lemma:\xce\xb4soxr'
2.248969 O b'lemma:pt7'
2.247412 Gtype b'lemma:dfnr'
2.234348 Technique b'-1:lemma:chip-exo'
2.225915 O b'+1:lemma:mid-log'
2.218353 Supp b'+1:lemma:deficient'
2.214682 Phase b'lemma:phase'
2.209324 Phase b'-1:lemma:until'
2.209232 Supp b'lemma:methanol'
2.187036 Technique b'postag:NNP'
2.159413 Temp b'-1:lemma:sample'
2.151326 Gtype b'-1:lemma:nsrr'
2.149028 Supp b'lemma:20'
2.143459 pH b'lemma:.5'
2.143459 pH b'-1:lemma:ph5'
2.130382 Supp b'-1:lemma:with'
2.124595 Phase b'-1:lemma:mid-log'
2.122806 Gversion b'+1:lemma:000913'
2.119158 Temp b'+1:lemma:\xc2\xb0c'
2.116827 O b'lemma:genotype/variation'
2.111971 Gtype b'-1:lemma:from'
2.099395 Gversion b'lemma:_'
2.093842 O b'postag:VBG'
2.087024 Gtype b'-1:lemma::'
2.084864 Med b'+1:lemma:-lrb-'
2.083399 Med b'lemma:broth'
2.083399 Med b'-1:lemma:L'
2.080517 Med b'lemma:L'
8.207743 Supp b'lemma:Iron'
8.126913 O b'lemma:_'
7.668488 Air b'lemma:anaerobic'
7.430711 Air b'lemma:aerobic'
7.087261 O b'lemma:1'
6.741673 Technique b'lemma:ChIP-exo'
6.330636 Supp b'lemma:nitrate'
6.316340 Strain b'lemma:k-12'
6.184951 Air b'-1:lemma:ChIP-Seq'
6.044256 Substrain b'lemma:mg1655'
6.022814 O b'lemma:2'
5.884584 O b'lemma:rpob'
5.829789 Phase b'lemma:stationary'
5.778215 O b'lemma:3'
5.775900 Med b'lemma:MOPS'
5.472627 Technique b'lemma:chipseq'
5.452821 Gtype b'lemma:type'
5.385754 Gversion b'lemma:nc'
5.283474 Technique b'lemma:ChIP-Seq'
5.207906 Gversion b'lemma:asm584v2'
5.127213 Phase b'lemma:mid-log'
5.064325 O b'postag:IN'
5.025536 O b'-1:lemma:ChIP-exo'
5.020720 O b'lemma:Custom'
4.808679 Supp b'lemma:pq'
4.770459 O b'lemma:\xcf\x8332'
4.677547 O b'lemma:b'
4.677327 Air b'lemma:Aerobic'
4.623206 Gtype b'lemma:\xce\xb4cra'
4.570334 OD b'lemma:od600'
4.480021 O b'lemma:rep1'
4.422817 Supp b'lemma:nh4cl'
4.411192 Supp b'+1:lemma:\xc2\xb5m'
4.371069 Med b'lemma:LB'
4.342307 O b'lemma:a'
4.339830 Gtype b'lemma:flag-tag'
4.339830 Gtype b'-1:lemma:c-terminal'
4.307469 O b'-1:lemma:tag'
4.290727 Gtype b'+1:lemma:type'
4.284775 Med b'lemma:lb'
4.262695 Gtype b'-1:lemma:\xe2\x88\x86'
4.262594 Temp b'-1:lemma:sample'
4.220453 O b'lemma:rep2'
4.087831 O b'postag::'
4.058385 Gversion b'-1:lemma:nc'
4.009221 O b'lemma:rep3'
3.965243 Gtype b'lemma:arca8myc'
3.958883 Supp b'lemma:glucose'
3.925260 Technique b'lemma:rna-seq'
3.899283 O b'lemma:Cra'
3.849955 OD b'lemma:od450'
3.714897 Gtype b'lemma:delta-arca'
3.673709 Gtype b'lemma:wt'
3.659796 Technique b'lemma:chip-seq'
3.528015 Gtype b'lemma:fnr8myc'
3.489859 O b'+1:lemma:od600'
3.484744 Supp b'lemma:Fe'
3.480788 Gtype b'lemma:nsrr'
3.465328 O b'lemma:.'
3.465328 O b'postag:.'
3.447372 O b'-1:lemma:type'
3.439488 Supp b'lemma:acetate'
3.385749 Anti b'+1:lemma:antibody'
3.365979 Gtype b'lemma:\xe2\x88\x86'
3.364067 Vess b'lemma:flask'
3.364067 Vess b'-1:lemma:warm'
3.286848 Supp b'lemma:no3'
3.283119 O b'-1:lemma:Aerobic'
3.269163 Supp b'lemma:arginine'
3.232797 Technique b'lemma:rnaseq'
3.230473 O b'postag:VBN'
3.182859 Supp b'lemma:fructose'
3.165112 Med b'+1:lemma:0.4'
3.163288 O b'lemma:-'
3.124487 Supp b'lemma:dpd'
3.038568 Air b'postag:RB'
3.018509 Gtype b'lemma:\xce\xb4fur'
3.008077 Supp b'lemma:rifampicin'
3.002475 Gtype b'-1:lemma:rpob'
3.000763 Gtype b'lemma:delta-fnr'
2.976036 pH b'lemma:ph5'
2.976036 pH b'+1:lemma:.5'
2.958886 Anti b'lemma:none'
2.909966 Temp b'-1:lemma:\xcf\x8332'
2.844862 Gtype b'+1:lemma:flagtag'
2.832159 O b'postag:CC'
2.773852 Supp b'+1:lemma:1'
2.760087 O b'-1:lemma:glucose'
2.714759 Gversion b'lemma:u00096'
2.714759 Gversion b'+1:lemma:.2'
2.713598 O b'lemma:chip'
2.709955 Temp b'lemma:\xc2\xb0c'
2.688829 Gversion b'lemma:000913'
2.679944 Anti b'lemma:seqa'
2.679837 Gtype b'+1:lemma:ph5'
2.659927 O b'-1:lemma:anaerobic'
2.645999 Gtype b'+1:lemma:with'
2.632697 O b'-1:lemma:0.3-0.35'
2.615260 OD b'+1:lemma:stationary'
2.610232 Gtype b'+1:lemma:pq'
2.600969 O b'lemma:CEL'
2.583139 Supp b'+1:lemma:2'
2.577577 Med b'+1:lemma:minimal'
2.529370 Med b'lemma:m63'
2.523009 Strain b'+1:lemma:substr'
2.501031 Gtype b'-1:lemma:ptac'
2.491778 Technique b'-1:lemma:IP'
2.481774 Gversion b'lemma:chip-seq'
2.430079 Gtype b'lemma:wild-type'
2.409612 Supp b'-1:lemma:\xc2\xb5m'
2.407221 Temp b'-1:lemma:37'
2.376179 Supp b'-1:lemma:+'
2.370422 O b'postag:DT'
2.364816 O b'lemma:s'
2.361663 pH b'lemma:.5'
2.361663 pH b'-1:lemma:ph5'
2.337980 Gversion b'lemma:.2'
2.337980 Gversion b'-1:lemma:u00096'
2.298988 Anti b'lemma:anti-rpos'
2.276207 O b'+1:postag:NNP'
2.273430 Temp b'-1:lemma:43'
2.257383 Supp b'-1:lemma:Cra'
2.255470 O b'+1:lemma:pq'
2.250731 Anti b'lemma:anti-myc'
2.208950 Technique b'-1:lemma:chip-exo'
2.195872 O b'lemma:or'
2.186698 Supp b'lemma:of'
2.185972 Temp b'-1:lemma:30'
2.185682 O b'+1:lemma:chip-seq'
2.166108 Technique b'+1:lemma:chip-exo'
2.160343 Supp b'lemma:iptg'
2.149961 O b'lemma:with'
2.149623 O b'-1:lemma:lb'
2.147543 Supp b'lemma:nacl'
2.136781 O b'postag:VBG'
2.134337 O b'+1:postag:RB'
2.118014 O b'-1:lemma:l1'
2.103907 Med b'+1:lemma:2.0'
2.053399 Med b'lemma:L'
2.053399 Med b'+1:lemma:broth'
2.047116 Air b'-1:lemma:-'
2.037292 OD b'lemma:0.3'
2.025848 Supp b'lemma:20'
2.016272 O b'lemma:culture'
2.002299 O b'lemma:affyexp'
1.995623 Med b'lemma:media'
1.991975 Med b'+1:lemma:g/l'
1.991131 Supp b'-1:lemma:with'
1.944808 Gtype b'lemma:\xce\xb4ompr'
1.919423 O b'+1:lemma:sparging'
1.902878 Phase b'-1:lemma:mid-log'
1.879469 O b'-1:lemma:0.3'
1.876614 Med b'-1:lemma:glucose'
1.873867 Phase b'lemma:exponentially'
1.862283 Supp b'+1:lemma:_'
1.850019 O b'lemma:genotype/variation'
1.840505 Air b'lemma:anaerobically'
1.834219 Supp b'lemma:Leu'
1.824637 Gversion b'postag:CD'
1.808661 Technique b'-1:lemma:1'
1.807281 Med b'+1:lemma:supplement'
1.791313 Gtype b'lemma:\xce\xb4soxs'
1.787667 O b'lemma:oxyr'
1.777332 Temp b'lemma:43'
1.758917 OD b'+1:lemma:phase'
1.745787 Gtype b'lemma:pk4854'
1.741695 pH b'+1:postag:CD'
1.718033 O b'lemma:at'
1.697274 Gtype b'lemma:ptac'
1.696614 Temp b'+1:lemma:\xc2\xb0c'
1.693293 Gtype b'-1:lemma:_'
1.690544 O b'lemma:Fur'
1.683055 Phase b'+1:postag:NNS'
1.671604 Technique b'-1:lemma:_'
1.638397 O b'+1:lemma:coli'
1.637347 O b'-1:lemma:\xc2\xb0c'
1.637198 Gtype b'+1:lemma:_'
1.626675 O b'lemma:condition'
1.625147 O b'lemma:ompr'
1.620349 O b'-1:lemma:dpd'
1.606845 Gtype b'postag:-RRB-'
1.599013 O b'+1:lemma:condition'
1.593871 O b'-1:lemma:media'
1.586989 Gtype b'lemma:deltaseqa'
1.586989 Gtype b'-1:lemma:old'
1.581118 Gtype b'+1:postag::'
1.574655 Supp b'lemma:2h'
1.574655 Supp b'-1:lemma:additional'
1.572066 Supp b'lemma:Adenine'
1.555644 Supp b'lemma:0.2'
1.553939 Med b'lemma:glucose'
1.551370 Air b'-1:lemma:co2'
1.550089 O b'-1:lemma:stpa'
1.547031 Phase b'-1:lemma:until'
1.545602 O b'lemma:escherichia'
1.534407 Phase b'+1:lemma:for'
1.534111 O b'lemma:to'
1.534111 O b'postag:TO'
1.506351 Air b'-1:postag:CD'
1.505075 OD b'-1:lemma:~'
Top negative:
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-0.117399 Med b'-1:postag:NN'
-0.121920 Phase b'-1:postag:NN'
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-0.146352 OD b'+1:lemma:in'
-0.147540 O b'-1:lemma:iptg'
-0.148360 Gtype b'lemma:ompr'
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-0.150545 Gtype b'-1:lemma:,'
-0.150545 Gtype b'-1:postag:,'
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-0.154518 O b'+1:lemma:5'
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-0.162601 O b'+1:lemma:strain'
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-0.179481 Med b'+1:postag:CC'
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-0.202202 O b'+1:lemma:antibody'
-0.204305 O b'+1:lemma:mg1655'
-0.205357 O b'+1:lemma:minimal'
-0.215743 O b'+1:lemma:.'
-0.215743 O b'+1:postag:.'
-0.224035 Supp b'+1:postag:IN'
-0.226319 Technique b'-1:lemma::'
-0.228443 Supp b'lemma:and'
-0.228851 O b'lemma:e.'
-0.233559 Gtype b'+1:lemma:cra'
-0.233930 O b'lemma:8'
-0.236052 Gtype b'+1:lemma:a'
-0.236429 O b'lemma:n2'
-0.240273 O b'-1:postag:-LRB-'
-0.243379 O b'-1:lemma:e.'
-0.246913 O b'-1:lemma:20'
-0.249761 O b'-1:postag:VBP'
-0.250445 O b'+1:lemma:from'
-0.253990 O b'lemma:co2'
-0.257147 O b'lemma:lb'
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-0.291947 O b'+1:lemma:until'
-0.292980 O b'lemma:minimal'
-0.294264 O b'lemma:30'
-0.295523 O b'-1:lemma:od600'
-0.299205 O b'+1:lemma:b'
-0.302254 O b'lemma:aerobically'
-0.310314 O b'lemma:grow'
-0.331454 O b'-1:lemma:0.1'
-0.331977 O b'-1:postag:VBN'
-0.340682 O b'+1:lemma:delta'
-0.346089 O b'+1:lemma:-lcb-'
-0.347377 O b'-1:lemma:um'
-0.347377 O b'+1:lemma:paraquat'
-0.348080 O b'+1:postag:-RRB-'
-0.348644 Gtype b'postag:CD'
-0.350220 O b'-1:lemma:chip-exo'
-0.353135 O b'lemma:mg/ml'
-0.353135 O b'-1:lemma:150'
-0.368298 O b'-1:lemma:mm'
-0.368952 O b'+1:lemma:phase'
-0.383392 Phase b'-1:lemma:at'
-0.383608 Gtype b'lemma:_'
-0.386439 O b'+1:postag:IN'
-0.389536 O b'lemma:glucose'
-0.397045 Supp b'+1:postag:VBN'
-0.406129 O b'postag:RB'
-0.417245 O b'lemma:m63'
-0.417398 OD b'+1:postag:CC'
-0.419368 Temp b'postag:JJ'
-0.422874 O b'+1:lemma:or'
-0.427973 O b'+1:lemma:%'
-0.435206 O b'+1:lemma:shake'
-0.441406 OD b'+1:lemma:mid-log'
-0.442803 Med b'+1:postag:NN'
-0.449476 O b'lemma:nacl'
-0.461678 O b'+1:lemma:_'
-0.466634 O b'lemma:od600'
-0.469668 Technique b'-1:postag::'
-0.470685 O b'-1:lemma:from'
-0.478610 Supp b'postag:CC'
-0.495782 O b'+1:lemma:dissolve'
-0.501976 Supp b'-1:postag:VBG'
-0.521671 O b'-1:lemma:rifampicin'
-0.527652 O b'lemma:\xc2\xb0c'
-0.532074 O b'-1:lemma:g/l'
-0.535235 O b'-1:lemma:cra'
-0.535605 pH b'postag:NN'
-0.540053 O b'+1:lemma:cell'
-0.542400 O b'-1:lemma:mid-log'
-0.554731 O b'+1:lemma:Aerobic'
-0.557223 OD b'+1:postag:NN'
-0.577398 Temp b'-1:lemma:\xc2\xb0c'
-0.586593 O b'+1:lemma:rep1'
-0.589048 O b'-1:lemma:30'
-0.595835 Med b'-1:postag:IN'
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-0.599331 Supp b'-1:lemma:%'
-0.612222 O b'+1:lemma:\xc2\xb0c'
-0.624875 O b'-1:lemma:affinity'
-0.636676 OD b'lemma:-lrb-'
-0.643469 O b'+1:postag:NNS'
-0.649099 Temp b'postag:NN'
-0.649456 O b'lemma:of'
-0.658905 Gtype b'-1:postag:SYM'
-0.660226 OD b'+1:lemma:and'
-0.660293 O b'+1:lemma:c'
-0.672111 O b'lemma:mg1655'
-0.675080 Gtype b'lemma:delta'
-0.677816 O b'lemma:dissolve'
-0.678428 Supp b'+1:lemma:rifampicin'
-0.684724 O b'-1:lemma:co2'
-0.686280 Gtype b'-1:postag:DT'
-0.694863 O b'-1:lemma:o2'
-0.722306 Gtype b'+1:lemma:\xe2\x88\x86'
-0.732614 O b'lemma:150'
-0.732614 O b'+1:lemma:mg/ml'
-0.761599 OD b'postag:-LRB-'
-0.772588 Temp b'+1:lemma:to'
-0.772588 Temp b'+1:postag:TO'
-0.781297 O b'lemma:anaerobically'
-0.807083 O b'+1:lemma:arginine'
-0.819715 O b'-1:lemma:\xe2\x88\x86'
-0.823821 O b'+1:lemma:0.3'
-0.836002 O b'lemma:dpd'
-0.858798 O b'+1:lemma:fecl2'
-0.878330 Med b'+1:postag:IN'
-0.883801 O b'-1:lemma:until'
-0.890383 O b'lemma:purify'
-0.893680 Anti b'+1:lemma:anti-fur'
-0.905649 O b'lemma:anaerobic'
-0.919723 O b'-1:lemma:0.2'
-0.932910 O b'+1:lemma:300'
-0.948417 O b'-1:lemma:ml'
-0.951682 O b'-1:lemma:1'
-0.955382 Air b'-1:postag:JJ'
-0.960497 O b'lemma:\xe2\x88\x86'
-0.979778 O b'-1:lemma:dissolve'
-0.979778 O b'+1:lemma:methanol'
-0.985663 O b'lemma:fecl2'
-0.995333 O b'lemma:media'
-1.037234 Phase b'-1:postag:JJ'
-1.042219 O b'lemma:20'
-1.048118 O b'lemma:k-12'
-1.067143 Supp b'+1:lemma:acetate'
-1.079445 O b'lemma:2h'
-1.079445 O b'-1:lemma:additional'
-1.084169 O b'+1:lemma:supplement'
-1.104220 O b'lemma:0.1'
-1.125319 O b'lemma:mid-log'
-1.136189 O b'lemma:0.2'
-1.136814 O b'-1:lemma:~'
-1.142555 O b'lemma:0.3'
-1.163967 O b'+1:lemma:at'
-1.165833 O b'+1:lemma:in'
-1.233659 O b'+1:postag:VBG'
-1.234566 OD b'postag:JJ'
-1.251923 O b'-1:postag:VBG'
-1.261321 Phase b'postag:JJ'
-1.282079 O b'+1:lemma:g/l'
-1.318236 O b'lemma:\xce\xb4fur'
-1.394008 O b'-1:lemma:ompr'
-1.417347 O b'-1:lemma:sample'
-1.574030 O b'lemma:37'
-1.604365 Supp b'postag:JJ'
-1.624714 O b'postag:VBP'
-1.649157 O b'-1:postag::'
-1.654774 Air b'postag:NN'
-1.662186 O b'-1:lemma:rpob'
-1.692863 Air b'+1:postag:JJ'
-1.720211 Anti b'postag:NNP'
-1.810759 O b'lemma:wt'
-1.845010 O b'-1:lemma:37'
-1.856437 O b'+1:lemma:+'
-1.877902 O b'-1:lemma:IP'
-1.987331 O b'-1:lemma:2'
-2.039453 O b'lemma:methanol'
-2.059494 O b'-1:lemma:nsrr'
-2.091546 O b'+1:lemma:2'
-2.107679 O b'lemma:rifampicin'
-2.361875 O b'+1:lemma:hour'
-2.588783 O b'+1:lemma:1'
-3.600862 O b'-1:lemma:_'
-3.688282 O b'-1:lemma::'
0.092498 O b'+1:postag:CD'
0.092371 Anti b'lemma:9e10'
0.092371 Anti b'+1:lemma:myc'
0.092365 Agit b'-1:lemma:at'
0.088750 OD b'postag:CD'
0.084799 Agit b'lemma:at'
0.079600 Gtype b'lemma:knock-out'
0.079374 O b'+1:lemma:rnase'
0.077611 OD b'-1:postag:CC'
0.072829 Supp b'+1:postag:IN'
0.069820 Gtype b'lemma:-rcb-'
0.069801 Air b'-1:lemma:5'
0.066910 Supp b'lemma:\xc2\xb5m'
0.066375 O b'-1:lemma:k-12'
0.064827 O b'+1:postag:FW'
0.064097 O b'+1:lemma:ml'
0.062110 Gtype b'-1:lemma:-lcb-'
0.062110 Gtype b'+1:lemma:-rcb-'
0.058601 OD b'postag:VBD'
0.056775 O b'-1:lemma:or'
0.054708 Anti b'-1:lemma:myc'
0.054377 O b'lemma:4'
0.053900 Supp b'+1:postag:RB'
0.051178 O b'+1:lemma:genbank'
0.049268 OD b'+1:postag:VBD'
0.049094 Temp b'+1:lemma:rep1'
0.045714 Temp b'-1:postag:VB'
0.036759 O b'-1:lemma:and'
0.035785 Gtype b'lemma:vector'
0.034778 Gtype b'+1:postag:JJ'
0.032455 Air b'lemma:n2'
0.031453 O b'+1:lemma:anaerobically'
0.031113 Supp b'lemma:1g/l'
0.028939 Anti b'-1:postag:JJ'
0.025208 O b'+1:postag:-LRB-'
0.022522 Supp b'lemma:feso4'
0.019983 Anti b'-1:postag:NNP'
0.019451 O b'lemma:short'
0.017590 O b'-1:postag:VBD'
0.016416 OD b'-1:postag:JJ'
0.016240 Gtype b'lemma:soxs-8myc'
0.016240 Gtype b'lemma:soxr-8myc'
0.015907 Med b'-1:lemma:in'
0.010217 O b'lemma:build'
0.009692 Gtype b'+1:lemma:strain'
0.007708 O b'-1:lemma:wp009'
0.006568 Supp b'+1:postag:CD'
0.005939 Phase b'postag:RB'
0.005863 OD b'-1:lemma:at'
0.005806 O b'+1:postag:JJ'
0.005343 O b'+1:lemma:_'
0.005004 O b'-1:lemma:genbank'
0.004892 O b'-1:lemma:for'
0.004437 O b'-1:postag:JJ'
0.003005 O b'-1:lemma:0.4'
0.002748 Phase b'+1:postag:RB'
0.002320 O b'+1:lemma:wt'
0.002265 Temp b'-1:postag:CD'
0.001918 Gtype b'-1:postag:-LRB-'
0.001584 OD b'+1:lemma:aerobically'
0.001566 Gtype b'lemma:cra'
0.001535 O b'lemma:and'
0.001302 Anti b'+1:lemma:tag'
0.001258 Air b'+1:lemma:-'
0.000559 O b'+1:lemma:for'
0.000503 OD b'-1:postag:VBN'
0.000466 Temp b'-1:postag:NNS'
0.000335 O b'-1:lemma:one'
0.000284 O b'lemma:acetate'
0.000236 OD b'+1:lemma:\xce\xb4soxr'
0.000229 Anti b'lemma:tag'
0.000227 OD b'-1:lemma:\xce\xb4oxyr'
0.000204 OD b'lemma:\xce\xb4soxr'
0.000192 Phase b'-1:lemma:to'
0.000192 Phase b'-1:postag:TO'
0.000121 OD b'postag:IN'
0.000100 O b'-1:lemma:genotype/variation'
0.000080 Air b'+1:postag::'
0.000059 O b'+1:lemma:to'
0.000059 O b'+1:postag:TO'
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-0.002159 O b'+1:lemma:95'
-0.002175 O b'-1:lemma:,'
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-0.175078 Supp b'-1:lemma:%'
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-0.274761 O b'+1:lemma:.'
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-0.533136 Supp b'+1:lemma:acetate'
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-0.567786 O b'lemma:fecl2'
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-0.928203 O b'-1:postag::'
-0.939567 O b'lemma:mid-log'
-0.989255 O b'-1:lemma:dissolve'
-0.989255 O b'+1:lemma:methanol'
-1.014879 O b'+1:lemma:supplement'
-1.026773 O b'-1:lemma:nsrr'
-1.030867 O b'lemma:wt'
-1.084034 O b'lemma:methanol'
-1.094856 O b'-1:lemma:co2'
-1.182260 O b'-1:lemma:IP'
-1.208078 O b'-1:postag:VBG'
-1.228784 Air b'postag:NN'
-1.321954 Air b'+1:postag:JJ'
-1.408887 Supp b'postag:JJ'
-1.451813 O b'lemma:rifampicin'
-1.529403 O b'+1:lemma:at'
-1.607126 O b'+1:lemma:in'
-1.625216 OD b'postag:-LRB-'
-2.150760 O b'+1:lemma:2'
-2.335073 O b'+1:lemma:1'
-2.385540 O b'-1:lemma:2'
-4.052103 O b'-1:lemma::'
-4.159550 O b'-1:lemma:_'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.2615074589465166, 'c2': 0.00276705652339924}
best CV score:0.816301419715609
model size: 0.07M
Flat F1: 0.8270102352867752
precision recall f1-score support
OD 0.652 0.405 0.500 37
pH 1.000 1.000 1.000 12
Technique 0.957 1.000 0.978 22
Med 1.000 0.912 0.954 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.810 0.758 0.783 62
Anti 1.000 1.000 1.000 9
Strain 1.000 1.000 1.000 1
Gtype 0.845 0.877 0.861 106
Substrain 0.000 0.000 0.000 1
Supp 0.881 0.706 0.784 136
Gversion 0.000 0.000 0.000 0
avg / total 0.870 0.796 0.827 480
Top likely transitions:
Agit -> Agit 6.901670
OD -> OD 6.662115
Temp -> Temp 5.932826
Med -> Med 5.616057
Supp -> Supp 4.930556
Air -> Air 4.771871
Anti -> Anti 4.504604
Gversion -> Gversion 4.501000
Phase -> Phase 4.124266
Technique -> Technique 4.076096
Gtype -> Gtype 3.973576
O -> O 3.951466
pH -> pH 2.018763
O -> Supp 1.197390
O -> Technique 1.079203
Gtype -> Supp 1.043942
Air -> O 0.963896
Supp -> O 0.612092
Substrain -> Gtype 0.476807
O -> Gtype 0.437647
Med -> O 0.335890
Phase -> O 0.267800
OD -> Phase 0.245045
Temp -> O 0.202449
O -> Anti 0.134070
Technique -> Air 0.008370
O -> Temp 0.000020
OD -> Air -0.031556
Gtype -> OD -0.047613
Phase -> OD -0.296269
Gtype -> O -0.463165
OD -> O -0.559048
Technique -> O -0.753141
O -> Air -0.928594
Agit -> O -1.028076
Med -> Supp -1.262808
Substrain -> O -1.295585
Top unlikely transitions:
Agit -> Agit 6.901670
OD -> OD 6.662115
Temp -> Temp 5.932826
Med -> Med 5.616057
Supp -> Supp 4.930556
Air -> Air 4.771871
Anti -> Anti 4.504604
Gversion -> Gversion 4.501000
Phase -> Phase 4.124266
Technique -> Technique 4.076096
Gtype -> Gtype 3.973576
O -> O 3.951466
pH -> pH 2.018763
O -> Supp 1.197390
O -> Technique 1.079203
Gtype -> Supp 1.043942
Air -> O 0.963896
Supp -> O 0.612092
Substrain -> Gtype 0.476807
O -> Gtype 0.437647
Med -> O 0.335890
Phase -> O 0.267800
OD -> Phase 0.245045
Temp -> O 0.202449
O -> Anti 0.134070
Technique -> Air 0.008370
O -> Temp 0.000020
OD -> Air -0.031556
Gtype -> OD -0.047613
Phase -> OD -0.296269
Gtype -> O -0.463165
OD -> O -0.559048
Technique -> O -0.753141
O -> Air -0.928594
Agit -> O -1.028076
Med -> Supp -1.262808
Substrain -> O -1.295585
Top positive:
7.812637 O b'lemma:1'
6.504281 O b'lemma:3'
6.400430 O b'word[:2]:re'
6.304930 Technique b'word[:2]:Ch'
6.279826 Air b'word[:2]:Ae'
5.852043 O b'lemma:2'
5.816867 O b'-2:lemma:_'
5.295700 Anti b'-2:lemma:antibody'
5.063616 Phase b'lemma:stationary'
4.995551 Air b'lemma:anaerobic'
4.918388 O b'lemma:a'
4.801031 O b'+2:lemma:\xc2\xb0c'
4.623525 O b'postag:IN'
4.395080 Gtype b'-1:lemma:\xe2\x88\x86'
4.294827 Phase b'lemma:mid-log'
4.288438 Gtype b'-2:lemma:genotype/variation'
4.244795 Technique b'word[:2]:RN'
4.131863 O b'postag::'
4.115454 Temp b'-1:lemma:sample'
3.937161 O b'+2:lemma:cra'
3.620368 O b'lemma:.'
3.620368 O b'postag:.'
3.598727 Gtype b'lemma:type'
3.598727 Gtype b'word[:2]:ty'
3.574166 Gtype b'word[:1]:\xce\x94'
3.565566 Gtype b'word[:2]:Fl'
3.545115 O b'word[:1]:S'
3.473665 O b'word[:1]:G'
3.465522 Med b'word[:2]:LB'
3.406689 O b'-1:lemma:tag'
3.343307 O b'word[:2]:ge'
3.313070 O b'postag:VBN'
3.293280 Supp b'lemma:nitrate'
3.293280 Supp b'word[:2]:ni'
3.264010 O b'+2:lemma:fructose'
3.240524 O b'+1:postag:RB'
3.140733 Supp b'lemma:arginine'
3.120877 O b'word[:1]:B'
3.061754 Air b'word[:2]:An'
3.016856 Supp b'+1:lemma:1'
2.979008 OD b'word[:2]:OD'
2.975113 O b'word[:2]:Rp'
2.916749 Supp b'+1:lemma:\xc2\xb5m'
2.856866 Supp b'word[:1]:I'
2.771072 Temp b'word[:1]:3'
2.740905 Anti b'+1:lemma:antibody'
2.679770 O b'lemma:_'
2.679770 O b'word[:1]:_'
2.661062 Med b'word[:1]:M'
2.651438 Supp b'-2:lemma:shake'
2.637158 Supp b'+1:lemma:2'
2.593344 Med b'lemma:MOPS'
2.593344 Med b'word[:2]:MO'
2.551429 O b'postag:DT'
2.548355 O b'+1:postag:VBP'
2.546726 Gtype b'-2:lemma:delta'
2.530641 Anti b'+2:lemma:antibody'
2.523357 Supp b'lemma:Iron'
2.523357 Supp b'word[:2]:Ir'
2.523357 Supp b'-2:lemma:Anaerobic'
2.503256 Gtype b'word[:1]:d'
2.469925 OD b'word[:1]:O'
2.458839 O b'word[:2]:Cr'
2.448696 O b'-1:lemma:Aerobic'
2.435690 Med b'+2:lemma:with'
2.412032 Supp b'word[:2]:Fe'
2.383646 O b'+2:lemma:chipseq'
2.330968 O b'postag:CC'
2.321337 O b'lemma:purr'
2.315130 Phase b'-2:lemma:phase'
2.313990 Air b'word[:1]:A'
2.307788 Air b'-1:lemma:co2'
2.270559 Gtype b'lemma:nsrr'
2.270559 Gtype b'word[:2]:Ns'
2.230916 O b'-2:lemma:medium'
2.219186 O b'lemma:b'
2.212270 O b'lemma:rpob'
2.211847 Supp b'lemma:acetate'
2.208823 Gtype b'-1:lemma:rpob'
2.193351 Gtype b'+2:lemma:glucose'
2.188714 Supp b'-2:lemma:purr'
2.167125 Substrain b'lemma:mg1655'
2.167125 Substrain b'word[:2]:MG'
2.162173 Supp b'-2:lemma:Lrp'
2.153258 pH b'lemma:ph5'
2.153258 pH b'+1:lemma:.5'
2.127429 Gversion b'lemma:chip-seq'
2.119617 O b'-1:lemma:anaerobic'
2.097711 Gtype b'+1:lemma:type'
2.093597 Gtype b'lemma:\xe2\x88\x86'
2.093597 Gtype b'word[:1]:\xe2\x88\x86'
2.073634 Med b'word[:1]:L'
2.067738 Substrain b'word[:1]:M'
2.066496 Temp b'+1:lemma:\xc2\xb0c'
2.028277 O b'word[:2]:Lr'
1.996518 O b'word[:1]:-'
1.987484 O b'-1:lemma:media'
1.972620 pH b'+1:postag:CD'
1.963565 Supp b'+1:lemma:_'
1.929849 O b'word[:2]:Cu'
1.926238 Gtype b'word[:1]:W'
1.923997 O b'-1:lemma:glucose'
1.920206 Supp b'-1:lemma:Cra'
1.885222 Supp b'+2:lemma:rifampicin'
1.838859 Temp b'-1:lemma:\xcf\x8332'
1.835835 O b'-1:lemma:lb'
1.834634 O b'word[:2]:ch'
1.831989 O b'-2:lemma:myc'
1.820007 Supp b'-1:lemma:with'
1.819919 Supp b'word[:2]:gl'
1.813003 Strain b'lemma:k-12'
1.813003 Strain b'word[:2]:K-'
1.800422 O b'+1:lemma:od600'
1.786685 Supp b'lemma:pq'
1.786685 Supp b'word[:2]:PQ'
1.786098 Supp b'-2:lemma:supplement'
1.773090 O b'lemma:argr'
1.754463 Supp b'-1:postag:CC'
1.752010 Temp b'lemma:43'
1.752010 Temp b'word[:2]:43'
1.748609 Gtype b'-2:lemma:genotype'
1.713554 Supp b'word[:1]:N'
1.705522 Med b'+1:lemma:0.4'
1.705477 Gtype b'-2:postag:DT'
1.699311 O b'lemma:with'
1.697768 Temp b'-2:lemma:\xcf\x8332'
1.696162 Supp b'word[:1]:\xc2\xb5'
1.684853 Supp b'+2:lemma:for'
1.669736 Med b'+2:lemma:b2'
1.659149 Strain b'word[:1]:K'
1.656653 O b'lemma:A'
1.642261 Gtype b'+1:lemma:with'
1.639045 O b'-1:lemma:0.3'
1.637590 O b'-1:lemma:type'
1.629911 Agit b'-2:postag:IN'
1.626799 Supp b'lemma:fructose'
1.598539 Gtype b'word[:2]:cr'
1.562458 Air b'+2:lemma:37'
1.560840 O b'+1:postag:NNP'
1.545322 O b'+1:lemma:nacl'
1.535808 Air b'postag:RB'
1.534546 pH b'word[:2]:pH'
1.526850 Air b'word[:2]:an'
1.494453 Supp b'+1:lemma:hour'
1.493417 Gtype b'hGreek'
1.485107 Gtype b'lemma:wt'
1.475865 O b'lemma:Nac'
1.465086 O b'-2:lemma:~'
1.460815 O b'postag:VBD'
1.455969 OD b'+1:lemma:stationary'
1.446469 Air b'-2:postag:CD'
1.436964 O b'word[:1]:c'
1.435630 Technique b'word[:1]:R'
1.424956 Temp b'-1:lemma:43'
1.424148 Gtype b'+1:lemma:flagtag'
1.422205 OD b'word[:2]:0.'
1.409582 Gtype b'postag:JJ'
1.404450 O b'word[:1]:R'
1.388050 Gversion b'lemma:nc'
1.388050 Gversion b'word[:2]:NC'
1.382998 O b'-2:lemma:co2'
1.376458 O b'+1:lemma:chip-seq'
1.376458 O b'word[:2]:In'
1.373329 Anti b'word[:2]:an'
1.361226 Gtype b'lemma:arca8myc'
1.361226 Gtype b'-2:lemma:chip-arca'
1.348605 O b'word[:1]:E'
1.340934 Supp b'lemma:dpd'
1.340934 Supp b'word[:2]:DP'
1.336435 O b'+1:postag::'
1.336267 O b'+1:postag:VBZ'
1.332234 O b'word[:2]:fo'
1.326668 Gversion b'word[:2]:Ch'
1.308053 Gtype b'-1:lemma:_'
1.306772 Supp b'-1:lemma:+'
1.299920 O b'+2:postag:JJ'
1.288650 Supp b'lemma:rifampicin'
1.282895 OD b'word[:1]:0'
1.279050 Air b'word[:1]:a'
1.278342 Supp b'word[:2]:ri'
1.276274 Air b'-1:lemma:ChIP-Seq'
1.270749 Air b'-2:lemma:IP'
1.268696 Gtype b'word[:1]:F'
1.267720 Air b'-2:lemma:%'
1.250226 Vess b'lemma:flask'
1.250226 Vess b'-1:lemma:warm'
1.250226 Vess b'word[:2]:fl'
1.250226 Vess b'-2:lemma:pre'
1.250226 Vess b'+2:lemma:43'
1.248294 Technique b'-1:postag:CD'
1.241744 Med b'+1:lemma:minimal'
1.240037 Supp b'-2:lemma:for'
1.238645 O b'word[:2]:or'
1.231304 Gversion b'-2:postag:VB'
1.230809 O b'lemma:Custom'
1.221416 Supp b'lemma:no3'
1.221416 Supp b'word[:2]:NO'
1.208975 O b'lemma:-'
1.208565 Supp b'-1:postag:CD'
1.196345 Gtype b'-2:postag:NNS'
Top negative:
-0.020651 Vess b'hLower'
-0.021405 Gtype b'word[:1]:g'
-0.022102 Temp b'hGreek'
-0.023747 Air b'-1:lemma:or'
-0.024998 O b'+1:lemma:phase'
-0.026006 O b'-1:lemma:of'
-0.026445 Technique b'lemma:chip-seq'
-0.027849 O b'-1:lemma:the'
-0.028545 O b'-1:lemma:-lrb-'
-0.028751 O b'+1:postag:CD'
-0.029296 O b'+1:lemma:-rrb-'
-0.033680 O b'lemma:150'
-0.033680 O b'+1:lemma:mg/ml'
-0.033680 O b'word[:2]:15'
-0.033680 O b'-2:lemma:concentration'
-0.033737 Supp b'hGreek'
-0.037022 OD b'+1:postag:CD'
-0.037317 O b'-1:lemma:g/l'
-0.040115 Supp b'+2:postag:NNS'
-0.040221 O b'+1:lemma:supplement'
-0.040832 O b'-2:lemma:of'
-0.040980 OD b'postag:JJ'
-0.042683 O b'-1:lemma:rifampicin'
-0.044489 Phase b'+1:postag:NN'
-0.045601 O b'+1:lemma:-lrb-'
-0.046663 O b'word[:1]:p'
-0.050360 Supp b'-2:postag:NN'
-0.052075 Air b'postag:-RRB-'
-0.052075 Air b'word[:2]:-R'
-0.055278 O b'+1:lemma:95'
-0.056644 O b'word[:2]:an'
-0.056812 O b'word[:2]:WT'
-0.058247 Air b'lemma:-rrb-'
-0.058272 Temp b'postag:NN'
-0.060275 Supp b'-1:postag:NN'
-0.068834 O b'word[:1]:g'
-0.075194 O b'lemma:0.1'
-0.075978 O b'+1:lemma:300'
-0.078371 Med b'-2:postag:NNP'
-0.085484 O b'-1:lemma:mm'
-0.090665 Med b'postag:NN'
-0.095552 Anti b'symb'
-0.097859 O b'-1:lemma:IP'
-0.098451 Gtype b'postag:NNP'
-0.098891 O b'+2:lemma:iptg'
-0.099213 O b'+2:lemma:anaerobically'
-0.100378 O b'-1:postag:-LRB-'
-0.100648 Air b'-1:postag:CC'
-0.102134 Phase b'-2:postag:NN'
-0.104356 O b'-2:lemma:30'
-0.104398 O b'-2:lemma:aerobically'
-0.104525 O b'-2:postag:-LRB-'
-0.112855 O b'-1:postag:VBN'
-0.129315 pH b'postag:NN'
-0.130801 O b'lemma:dissolve'
-0.130801 O b'+2:lemma:methanol'
-0.132204 Gversion b'-1:postag:NN'
-0.135249 O b'+2:lemma:-rrb-'
-0.136494 Temp b'-2:postag:NN'
-0.140087 Air b'postag:CC'
-0.143197 Anti b'+1:postag:JJ'
-0.145931 O b'lemma:dpd'
-0.145931 O b'word[:2]:DP'
-0.146304 O b'+1:lemma:minimal'
-0.149480 O b'+2:lemma:mg1655'
-0.153199 O b'lemma:glucose'
-0.156279 O b'word[:2]:OD'
-0.167599 O b'-2:lemma:anaerobically'
-0.169441 O b'+2:lemma:.'
-0.169441 O b'+2:postag:.'
-0.176081 O b'-2:lemma:and'
-0.176601 O b'word[:2]:gl'
-0.178983 O b'word[:2]:30'
-0.182343 Supp b'-2:lemma:-lrb-'
-0.182989 Gtype b'+2:lemma:,'
-0.182989 Gtype b'+2:postag:,'
-0.187940 O b'-2:postag:RB'
-0.188522 Gtype b'-1:postag:NN'
-0.193161 Supp b'-2:postag:-LRB-'
-0.195209 O b'+1:postag:VBG'
-0.195524 Gtype b'-1:lemma:,'
-0.195524 Gtype b'-1:postag:,'
-0.196160 O b'-2:postag:-RRB-'
-0.205382 O b'lemma:media'
-0.205997 O b'+1:lemma:+'
-0.207188 O b'-2:postag:VBG'
-0.214958 O b'-1:postag:IN'
-0.216865 O b'+2:lemma:fnr'
-0.220433 O b'-1:lemma:iptg'
-0.225687 OD b'+2:postag:CD'
-0.226895 Anti b'+1:lemma:anti-fur'
-0.227678 O b'+1:lemma:hour'
-0.227891 O b'+1:lemma:\xc2\xb0c'
-0.233240 O b'+1:postag:-RRB-'
-0.234954 O b'+1:lemma:until'
-0.238139 O b'lemma:2h'
-0.238139 O b'-1:lemma:additional'
-0.238139 O b'word[:2]:2h'
-0.240394 Med b'-2:lemma:grow'
-0.240644 O b'+1:lemma:cell'
-0.240717 O b'lemma:20'
-0.241598 Air b'+1:postag:JJ'
-0.243020 Air b'+2:postag:IN'
-0.249072 O b'+1:lemma:.'
-0.249072 O b'+1:postag:.'
-0.270838 O b'lemma:aerobically'
-0.270838 O b'word[:2]:ae'
-0.272076 O b'-2:lemma:IP'
-0.276552 Anti b'+2:postag:JJ'
-0.282858 O b'word[:2]:mg'
-0.291041 O b'+1:lemma:_'
-0.299542 O b'-2:postag:DT'
-0.314381 O b'word[:1]:F'
-0.315135 O b'+2:lemma:medium'
-0.316365 O b'lemma:k-12'
-0.316365 O b'word[:2]:K-'
-0.323941 O b'-1:lemma:rpob'
-0.324142 O b'+1:lemma:g/l'
-0.324651 OD b'-2:postag:JJ'
-0.330410 Med b'+1:postag:NN'
-0.337573 O b'lemma:anaerobically'
-0.342544 O b'word[:2]:ri'
-0.349990 Supp b'+2:lemma:-rrb-'
-0.361823 O b'-1:lemma:mid-log'
-0.376409 O b'-1:lemma:nsrr'
-0.377222 Anti b'+2:lemma:polyclonal'
-0.377621 O b'-1:lemma:grow'
-0.387403 O b'-2:lemma:rpob'
-0.393536 O b'-1:lemma:37'
-0.397261 Supp b'+2:postag:-RRB-'
-0.408344 O b'word[:1]:K'
-0.411343 O b'-1:lemma:0.2'
-0.413533 O b'lemma:phase'
-0.415095 O b'word[:2]:Fe'
-0.418603 Supp b'-2:postag:JJ'
-0.422914 O b'lemma:rifampicin'
-0.425448 O b'-2:lemma:a'
-0.436504 O b'-2:lemma::'
-0.440069 Med b'-1:postag:NN'
-0.450178 Supp b'+2:lemma:2'
-0.452858 O b'lemma:of'
-0.452858 O b'word[:2]:of'
-0.456778 Supp b'lemma:2'
-0.464475 Agit b'symb'
-0.477506 Supp b'+2:postag:NN'
-0.480481 O b'word[:2]:0.'
-0.484144 O b'+2:lemma:rifampicin'
-0.495023 OD b'+1:postag:NN'
-0.495729 O b'lemma:methanol'
-0.495729 O b'-2:lemma:dissolve'
-0.498568 O b'-1:lemma:dissolve'
-0.498568 O b'+1:lemma:methanol'
-0.501386 O b'postag:RB'
-0.501736 O b'-2:lemma:50'
-0.505561 Agit b'hUpper'
-0.505561 Agit b'hLower'
-0.507205 O b'+1:postag:NNS'
-0.510498 O b'+2:postag:-RRB-'
-0.539348 O b'+2:postag:RB'
-0.550860 O b'word[:1]:0'
-0.576925 Med b'+1:postag:IN'
-0.579947 O b'lemma:mid-log'
-0.589847 O b'word[:1]:d'
-0.639331 Phase b'hUpper'
-0.639331 Phase b'hLower'
-0.644727 O b'+1:postag:IN'
-0.678795 Med b'symb'
-0.717017 Med b'-2:postag:VBN'
-0.751995 Supp b'word[:2]:an'
-0.759518 O b'-1:lemma:co2'
-0.776028 O b'-1:postag:VBG'
-0.792743 O b'-2:lemma:supplement'
-0.794523 O b'word[:2]:me'
-0.883371 O b'word[:2]:ce'
-0.883506 O b'lemma:wt'
-0.888247 O b'+2:lemma:mid-log'
-0.920374 O b'word[:2]:Ch'
-0.968528 O b'word[:1]:N'
-1.043344 O b'-2:lemma:rifampicin'
-1.053670 Gtype b'word[:1]:C'
-1.081691 Supp b'symb'
-1.097239 O b'word[:1]:\xce\x94'
-1.146299 Air b'-1:postag:JJ'
-1.205559 O b'-2:lemma:phase'
-1.226939 Phase b'postag:JJ'
-1.279089 O b'-1:postag::'
-1.306934 O b'word[:1]:P'
-1.435763 Air b'postag:NN'
-1.552893 Supp b'postag:JJ'
-1.656010 O b'+1:lemma:in'
-1.838496 O b'-1:lemma:2'
-1.866172 Technique b'postag:NN'
-2.005093 O b'+1:lemma:at'
-2.021343 Anti b'postag:NNP'
-2.209344 Supp b'+2:postag:CD'
-2.425446 O b'+1:lemma:2'
-2.700819 O b'+1:lemma:1'
-2.961178 OD b'word[:1]:-'
-3.613008 O b'-1:lemma::'
-5.053367 O b'-1:lemma:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.09511707500453928, 'c2': 0.0519939941697524}
best CV score:0.7998412075268018
model size: 0.08M
Flat F1: 0.7932328849300371
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.889 0.842 0.865 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.863 0.774 0.816 106
Substrain 0.000 0.000 0.000 1
Supp 0.869 0.684 0.765 136
Gversion 0.000 0.000 0.000 0
avg / total 0.877 0.742 0.793 480
Top likely transitions:
OD -> OD 5.749772
Agit -> Agit 5.688189
Temp -> Temp 5.111918
Anti -> Anti 4.939494
Med -> Med 4.868494
Air -> Air 4.689503
O -> O 4.416867
Gversion -> Gversion 4.266419
Gtype -> Gtype 4.185164
Phase -> Phase 3.973215
Supp -> Supp 3.799309
Technique -> Technique 3.093180
pH -> pH 2.189243
O -> Supp 1.935389
Gtype -> Supp 1.770914
Substrain -> Gtype 1.755994
Air -> O 1.607275
O -> Gtype 1.391276
O -> Technique 1.205509
Technique -> Air 0.988264
Gtype -> pH 0.880145
O -> Temp 0.803834
O -> Anti 0.795385
Med -> O 0.789203
OD -> Phase 0.519647
Temp -> O 0.509435
Gtype -> Air 0.467309
Phase -> O 0.450923
O -> Gversion 0.422170
Supp -> O 0.376214
O -> pH 0.285778
O -> Strain 0.277519
O -> Med 0.183463
O -> Vess 0.108208
Anti -> O 0.032635
Gtype -> O 0.000074
O -> Agit -0.011460
Anti -> Supp -0.011497
Air -> Temp -0.016955
O -> Phase -0.028542
Gversion -> Technique -0.030101
OD -> Supp -0.066876
Technique -> O -0.067595
Gversion -> Supp -0.135604
Anti -> Gtype -0.143013
Air -> Supp -0.157667
Air -> Med -0.174826
Gtype -> Phase -0.197920
Med -> Air -0.205361
OD -> Gtype -0.211062
Top unlikely transitions:
O -> Med 0.183463
O -> Vess 0.108208
Anti -> O 0.032635
Gtype -> O 0.000074
O -> Agit -0.011460
Anti -> Supp -0.011497
Air -> Temp -0.016955
O -> Phase -0.028542
Gversion -> Technique -0.030101
OD -> Supp -0.066876
Technique -> O -0.067595
Gversion -> Supp -0.135604
Anti -> Gtype -0.143013
Air -> Supp -0.157667
Air -> Med -0.174826
Gtype -> Phase -0.197920
Med -> Air -0.205361
OD -> Gtype -0.211062
Supp -> Temp -0.212874
Supp -> pH -0.213431
Supp -> Phase -0.219962
Gversion -> Air -0.225808
Temp -> Med -0.253881
Supp -> Anti -0.265528
Gtype -> Technique -0.268918
Technique -> Supp -0.284128
Phase -> Technique -0.303684
Anti -> OD -0.378454
Air -> OD -0.388802
Gtype -> Gversion -0.434612
Supp -> Gversion -0.461142
Supp -> Gtype -0.480734
Supp -> Technique -0.490490
Supp -> OD -0.493041
Gtype -> Med -0.540343
OD -> Med -0.546645
OD -> O -0.581637
Supp -> Air -0.585456
OD -> Air -0.600309
O -> Air -0.604701
Gtype -> Anti -0.624686
Agit -> O -0.663403
Substrain -> O -0.867732
Gtype -> OD -0.893986
Technique -> OD -0.928156
Technique -> pH -0.950458
Technique -> Gtype -0.973255
Supp -> Med -1.074321
Med -> Supp -1.297374
Phase -> OD -1.457940
Top positive:
6.617235 O b'lemma:_'
5.661937 O b'lemma:1'
5.054136 Air b'lemma:anaerobic'
4.862395 O b'lemma:2'
4.817668 Strain b'lemma:k-12'
4.770160 Technique b'lemma:ChIP-exo'
4.675717 Supp b'lemma:Iron'
4.608643 Air b'lemma:aerobic'
4.570021 Technique b'lemma:chipseq'
4.467942 Phase b'lemma:stationary'
4.467649 O b'postag:IN'
4.445501 O b'lemma:rpob'
4.351529 Supp b'lemma:pq'
4.293076 Phase b'lemma:mid-log'
4.284291 O b'lemma:3'
4.120140 Supp b'lemma:nh4cl'
4.041253 Supp b'lemma:glucose'
4.028882 Substrain b'lemma:mg1655'
3.913121 Gtype b'lemma:\xce\xb4cra'
3.860061 Air b'-1:lemma:ChIP-Seq'
3.841678 O b'lemma:rep1'
3.777629 Gtype b'lemma:wt'
3.746035 Gtype b'lemma:arca8myc'
3.726494 Gtype b'lemma:flag-tag'
3.726494 Gtype b'-1:lemma:c-terminal'
3.686798 Supp b'+1:lemma:\xc2\xb5m'
3.646788 O b'postag::'
3.631452 Gtype b'-1:lemma:\xe2\x88\x86'
3.621528 Gversion b'lemma:asm584v2'
3.593824 O b'lemma:rep2'
3.590555 Air b'lemma:Aerobic'
3.573506 Supp b'lemma:nitrate'
3.508451 Med b'lemma:lb'
3.458882 O b'-1:lemma:tag'
3.422575 O b'lemma:b'
3.405411 O b'lemma:Cra'
3.384112 O b'lemma:a'
3.334968 Med b'lemma:LB'
3.334210 Supp b'lemma:acetate'
3.282677 O b'lemma:rep3'
3.251111 Supp b'lemma:no3'
3.227141 O b'-1:lemma:ChIP-exo'
3.219816 Supp b'lemma:dpd'
3.209926 OD b'lemma:od600'
3.208899 Technique b'lemma:rna-seq'
3.204074 Gtype b'lemma:delta-arca'
3.194919 O b'lemma:.'
3.194919 O b'postag:.'
3.124102 Gtype b'lemma:fnr8myc'
3.110051 O b'lemma:\xcf\x8332'
3.081376 Supp b'lemma:Fe'
3.079283 Gtype b'lemma:\xe2\x88\x86'
3.065167 O b'lemma:Custom'
3.058600 Gtype b'lemma:type'
3.022678 Technique b'lemma:chip-seq'
3.000186 Med b'lemma:MOPS'
2.991397 O b'lemma:CEL'
2.914578 Gversion b'lemma:nc'
2.867833 Technique b'lemma:rnaseq'
2.848233 Supp b'+1:lemma:1'
2.835201 Anti b'lemma:none'
2.827074 Gtype b'+1:lemma:type'
2.826416 O b'-1:lemma:Aerobic'
2.786406 O b'+1:postag:RB'
2.776930 pH b'lemma:ph5'
2.776930 pH b'+1:lemma:.5'
2.774438 O b'+1:lemma:od600'
2.765842 Gtype b'+1:lemma:with'
2.764772 Technique b'lemma:ChIP-Seq'
2.754976 Supp b'lemma:fructose'
2.736514 O b'postag:VBN'
2.708858 Med b'+1:lemma:0.4'
2.677396 Anti b'lemma:seqa'
2.673247 Vess b'lemma:flask'
2.673247 Vess b'-1:lemma:warm'
2.663413 Air b'postag:RB'
2.650175 OD b'lemma:od450'
2.624313 Supp b'lemma:rifampicin'
2.613050 Gtype b'lemma:delta-fnr'
2.611370 O b'lemma:-'
2.593952 Gtype b'lemma:\xce\xb4fur'
2.563276 Supp b'-1:lemma:Cra'
2.543682 O b'-1:lemma:0.3-0.35'
2.528111 Gtype b'lemma:nsrr'
2.524519 Supp b'+1:lemma:2'
2.523387 Gtype b'lemma:wild-type'
2.492162 Gversion b'lemma:chip-seq'
2.476148 Temp b'lemma:\xc2\xb0c'
2.467250 Supp b'+1:lemma:Deficient'
2.437288 Anti b'+1:lemma:antibody'
2.432769 Technique b'-1:lemma:IP'
2.424289 Supp b'lemma:arginine'
2.423238 O b'lemma:affyexp'
2.417028 Med b'lemma:m63'
2.413930 Gversion b'lemma:u00096'
2.413930 Gversion b'+1:lemma:.2'
2.398644 Gversion b'lemma:.2'
2.398644 Gversion b'-1:lemma:u00096'
2.392020 Gversion b'-1:lemma:nc'
2.383653 Gversion b'lemma:000913'
2.375231 O b'lemma:s'
2.367385 Med b'+1:lemma:minimal'
2.347384 Strain b'+1:lemma:substr'
2.340890 O b'-1:lemma:anaerobic'
2.334292 O b'-1:lemma:glucose'
2.302375 O b'lemma:or'
2.301832 Supp b'+1:lemma:_'
2.293105 O b'lemma:with'
2.236084 pH b'+1:postag:CD'
2.207764 Gtype b'-1:lemma:ptac'
2.195074 Gtype b'lemma:\xce\xb4soxs'
2.178906 Gtype b'+1:lemma:flagtag'
2.176058 Temp b'+1:lemma:\xc2\xb0c'
2.168855 O b'lemma:oxyr'
2.168601 O b'-1:lemma:type'
2.157843 O b'-1:lemma:stpa'
2.149393 Gtype b'+1:lemma:pq'
2.146677 Phase b'-1:lemma:mid-log'
2.131005 O b'lemma:chip-arca'
2.119123 O b'-1:lemma:lb'
2.094710 O b'postag:CC'
2.091261 pH b'lemma:.5'
2.091261 pH b'-1:lemma:ph5'
2.082804 Med b'+1:lemma:2.0'
2.061762 Anti b'lemma:anti-myc'
2.057834 Gtype b'lemma:WT'
2.055720 O b'lemma:argr'
2.042900 O b'lemma:chip'
2.041455 Gtype b'-1:lemma:rpob'
2.037173 Temp b'-1:lemma:43'
2.035435 Supp b'lemma:nacl'
2.034038 O b'postag:SYM'
2.032965 Temp b'lemma:43'
2.008638 Med b'+1:lemma:+'
1.996466 Gtype b'lemma:\xce\xb4ompr'
1.985063 Supp b'lemma:iptg'
1.984597 Technique b'-1:lemma:chip-exo'
1.979684 O b'+1:lemma:pq'
1.976317 O b'postag:DT'
1.966888 Temp b'-1:lemma:sample'
1.963356 O b'lemma:ompr'
1.961470 Phase b'lemma:phase'
1.956222 Gtype b'lemma:ptac'
1.954916 Supp b'lemma:Leu'
1.930644 O b'lemma:chip-fnr'
1.929006 Air b'-1:lemma:-'
1.928521 Air b'-1:postag:CD'
1.924588 Supp b'-1:lemma:\xc2\xb5m'
1.923822 Temp b'-1:lemma:37'
1.914522 Air b'lemma:anaerobically'
1.914101 O b'lemma:purr'
1.913285 Anti b'lemma:anti-rpos'
1.908434 O b'+1:lemma:mid-log'
1.907365 Gtype b'+1:lemma:_'
1.901978 Supp b'+1:lemma:hour'
1.884890 Technique b'postag:NNP'
1.883342 Technique b'+1:lemma:chip-exo'
1.879749 O b'lemma:Fur'
1.875921 Supp b'-1:lemma:+'
1.873441 Technique b'-1:lemma:input'
1.872859 Substrain b'+1:lemma:phtpg'
1.868639 Air b'lemma:Anaerobic'
1.868217 Supp b'-1:lemma:with'
1.854650 O b'-1:lemma:l1'
1.843125 O b'+1:lemma:anti-fur'
1.840890 Gtype b'lemma:pk4854'
1.835897 Gtype b'lemma:deltaseqa'
1.835897 Gtype b'-1:lemma:old'
1.834676 O b'lemma:Lrp'
1.815094 Gtype b'+1:lemma:ph5'
1.812550 Temp b'-1:lemma:\xcf\x8332'
1.812482 O b'postag:VBG'
1.802963 Gversion b'+1:lemma:000913'
1.799635 Gtype b'-1:lemma:nsrr'
1.789000 Med b'postag:NNP'
1.788228 Air b'-1:lemma:co2'
1.780588 Gtype b'+1:lemma:aerobic'
1.779977 O b'lemma:culture'
1.779785 Gtype b'-1:lemma::'
1.774675 O b'lemma:genotype/variation'
1.769006 Air b'-1:postag::'
1.759945 Supp b'-1:lemma:mm'
1.755681 Temp b'lemma:37'
1.748053 Phase b'+1:lemma:for'
1.747688 Supp b'lemma:Adenine'
1.745141 OD b'+1:lemma:stationary'
1.744193 O b'lemma:at'
1.744117 Med b'-1:lemma:ml'
1.735692 O b'+1:lemma:43'
1.733011 Supp b'+1:lemma:and'
1.727139 O b'+1:lemma:chip-seq'
1.724866 Med b'lemma:glucose'
1.721249 Supp b'lemma:20'
1.704065 Gtype b'-1:lemma:_'
1.687377 Supp b'+1:lemma:respiratory'
1.681655 Med b'lemma:L'
1.681655 Med b'+1:lemma:broth'
1.672214 Gversion b'lemma:_'
1.650800 Med b'lemma:broth'
1.650800 Med b'-1:lemma:L'
Top negative:
-0.005569 OD b'+1:lemma:0.4'
-0.005746 Gtype b'-1:lemma:,'
-0.005746 Gtype b'-1:postag:,'
-0.005870 Gtype b'+1:postag:NNS'
-0.006749 Supp b'lemma:mm'
-0.007678 Air b'lemma:70'
-0.007875 O b'+1:lemma:25'
-0.007908 O b'+1:lemma:pahse'
-0.013446 Gtype b'-1:postag:NNP'
-0.017395 O b'-1:lemma:,'
-0.017395 O b'-1:postag:,'
-0.018516 Supp b'-1:postag:NN'
-0.022449 Phase b'+1:postag:NN'
-0.024166 Air b'-1:postag:CC'
-0.027647 Air b'-1:lemma:or'
-0.028887 O b'lemma:o2'
-0.030271 Supp b'postag:CD'
-0.031072 Air b'postag:CC'
-0.032381 Supp b'-1:postag:NNP'
-0.032995 Air b'+1:lemma:-lrb-'
-0.033529 O b'lemma:pahse'
-0.034814 O b'+1:lemma:-lcb-'
-0.035317 O b'+1:lemma:~'
-0.037498 O b'lemma:dpd'
-0.038911 O b'-1:lemma:mm'
-0.039919 O b'-1:postag:VBP'
-0.044315 OD b'postag:IN'
-0.051484 O b'-1:lemma:n2'
-0.055584 OD b'+1:postag:CD'
-0.055696 O b'+1:lemma:95'
-0.055992 Air b'-1:lemma:anaerobically'
-0.056642 O b'-1:lemma:with'
-0.061370 Gtype b'+1:lemma:-lrb-'
-0.068768 O b'+1:lemma:minimal'
-0.069489 Supp b'lemma:and'
-0.082415 O b'lemma:aerobically'
-0.086345 Air b'+1:postag:-LRB-'
-0.088098 O b'lemma:mg/ml'
-0.088098 O b'-1:lemma:150'
-0.094403 Supp b'+1:postag:-RRB-'
-0.096341 O b'lemma:medium'
-0.108911 OD b'+1:lemma:and'
-0.114634 OD b'postag:JJ'
-0.117058 O b'-1:lemma:20'
-0.118245 O b'lemma:grow'
-0.125516 O b'+1:lemma:_'
-0.127227 O b'+1:lemma:antibody'
-0.129539 O b'+1:lemma:b'
-0.129952 O b'-1:lemma:the'
-0.131173 Gversion b'+1:postag:NN'
-0.134503 O b'+1:lemma:phase'
-0.137711 Med b'postag:CD'
-0.142578 O b'+1:lemma:5'
-0.148353 O b'+1:lemma:mg1655'
-0.150243 O b'lemma:\xc2\xb0c'
-0.158759 O b'lemma:glucose'
-0.159456 Supp b'+1:lemma:glucose'
-0.162765 Technique b'-1:lemma::'
-0.163159 O b'postag:RB'
-0.165065 Med b'+1:postag:NN'
-0.165350 Gtype b'+1:lemma:cra'
-0.166969 OD b'+1:postag:CC'
-0.170125 O b'-1:lemma:o2'
-0.173691 O b'-1:lemma:e.'
-0.178574 Gtype b'-1:postag:CD'
-0.178685 O b'+1:lemma:-rrb-'
-0.181033 O b'lemma:co2'
-0.184801 Anti b'+1:postag:JJ'
-0.192236 O b'lemma:e.'
-0.196425 O b'lemma:mg1655'
-0.198559 Gtype b'postag:CD'
-0.208272 O b'-1:postag:IN'
-0.209806 O b'+1:lemma:.'
-0.209806 O b'+1:postag:.'
-0.218423 Med b'-1:postag:IN'
-0.219166 O b'lemma:30'
-0.219834 Supp b'+1:postag:IN'
-0.227296 O b'-1:lemma:um'
-0.227296 O b'+1:lemma:paraquat'
-0.229687 O b'-1:postag:VBN'
-0.236380 Med b'-1:postag:NN'
-0.239831 O b'-1:lemma:chip-exo'
-0.242289 O b'-1:lemma:of'
-0.246361 O b'+1:lemma:%'
-0.247802 O b'-1:lemma:-lrb-'
-0.249050 O b'-1:lemma:iptg'
-0.249812 O b'+1:lemma:dissolve'
-0.255335 O b'-1:lemma:mid-log'
-0.259151 O b'-1:lemma:0.1'
-0.264441 O b'+1:lemma:0.4'
-0.269854 Gtype b'lemma:delta'
-0.270560 O b'+1:lemma:rep1'
-0.279580 Supp b'+1:postag:VBN'
-0.287048 Air b'postag:CD'
-0.290077 Gtype b'+1:lemma:\xe2\x88\x86'
-0.292771 O b'lemma:m63'
-0.294023 O b'-1:lemma:from'
-0.312557 Gtype b'-1:postag:DT'
-0.318799 O b'+1:lemma:until'
-0.329610 Supp b'-1:lemma:%'
-0.342219 Temp b'postag:JJ'
-0.343713 Phase b'-1:lemma:at'
-0.349210 O b'+1:lemma:shake'
-0.355247 O b'-1:postag:-LRB-'
-0.370779 O b'-1:lemma:rifampicin'
-0.403678 O b'+1:lemma:Aerobic'
-0.404389 Temp b'-1:lemma:\xc2\xb0c'
-0.409312 O b'+1:postag:-RRB-'
-0.410591 O b'-1:lemma:g/l'
-0.411118 O b'+1:postag:IN'
-0.411360 Gtype b'lemma:_'
-0.413583 Supp b'postag:CC'
-0.421267 O b'lemma:lb'
-0.426132 O b'+1:lemma:cell'
-0.436831 pH b'postag:NN'
-0.446628 Gtype b'-1:postag:SYM'
-0.450017 O b'-1:lemma:grow'
-0.451231 Supp b'+1:lemma:rifampicin'
-0.454808 O b'+1:lemma:c'
-0.459381 O b'lemma:phase'
-0.461745 O b'-1:lemma:30'
-0.462999 O b'-1:lemma:cra'
-0.486521 Temp b'+1:lemma:to'
-0.486521 Temp b'+1:postag:TO'
-0.490929 O b'lemma:150'
-0.490929 O b'+1:lemma:mg/ml'
-0.500528 O b'-1:lemma:until'
-0.504446 Technique b'-1:postag::'
-0.510873 O b'lemma:purify'
-0.517449 Phase b'postag:JJ'
-0.518655 O b'+1:lemma:\xc2\xb0c'
-0.519475 O b'+1:postag:NNS'
-0.532580 Med b'+1:postag:IN'
-0.557262 O b'-1:lemma:od600'
-0.567606 O b'-1:lemma:~'
-0.586909 O b'+1:lemma:arginine'
-0.591624 Anti b'+1:lemma:anti-fur'
-0.595260 O b'-1:lemma:\xe2\x88\x86'
-0.619039 O b'+1:lemma:300'
-0.633916 OD b'lemma:-lrb-'
-0.639826 O b'-1:lemma:1'
-0.645911 Temp b'postag:NN'
-0.655433 O b'lemma:dissolve'
-0.668333 O b'+1:lemma:0.3'
-0.706553 Phase b'-1:postag:JJ'
-0.715634 O b'lemma:anaerobic'
-0.728858 O b'lemma:media'
-0.729613 OD b'postag:-LRB-'
-0.740187 O b'lemma:fecl2'
-0.754262 O b'-1:lemma:0.2'
-0.784045 O b'lemma:anaerobically'
-0.786214 O b'lemma:20'
-0.787962 Supp b'+1:lemma:acetate'
-0.788691 Air b'-1:postag:JJ'
-0.793632 O b'lemma:od600'
-0.801628 O b'lemma:0.3'
-0.804157 O b'+1:lemma:fecl2'
-0.826218 O b'lemma:\xe2\x88\x86'
-0.840032 O b'-1:lemma:ml'
-0.841125 O b'lemma:mid-log'
-0.845143 O b'lemma:of'
-0.852270 O b'-1:postag:VBG'
-0.883031 O b'lemma:0.1'
-0.909031 O b'postag:VBP'
-0.912966 O b'lemma:\xce\xb4fur'
-0.938631 O b'lemma:2h'
-0.938631 O b'-1:lemma:additional'
-0.944242 O b'+1:postag:VBG'
-0.987279 O b'lemma:0.2'
-0.990573 O b'+1:lemma:at'
-1.010504 O b'+1:lemma:in'
-1.029267 O b'lemma:k-12'
-1.051923 O b'lemma:37'
-1.077459 O b'-1:lemma:co2'
-1.077853 OD b'+1:postag:NN'
-1.086493 O b'-1:lemma:sample'
-1.089368 O b'-1:lemma:ompr'
-1.092223 O b'+1:lemma:g/l'
-1.092574 O b'+1:lemma:supplement'
-1.150032 O b'+1:lemma:hour'
-1.170208 O b'-1:lemma:dissolve'
-1.170208 O b'+1:lemma:methanol'
-1.203200 O b'-1:lemma:rpob'
-1.305820 O b'lemma:wt'
-1.316586 O b'lemma:methanol'
-1.391650 O b'+1:lemma:+'
-1.397786 O b'-1:lemma:37'
-1.435566 Air b'+1:postag:JJ'
-1.436410 Supp b'postag:JJ'
-1.476904 Anti b'postag:NNP'
-1.478116 O b'lemma:rifampicin'
-1.558593 O b'-1:postag::'
-1.634246 O b'-1:lemma:nsrr'
-1.646012 Air b'postag:NN'
-1.659601 O b'-1:lemma:IP'
-1.726878 O b'-1:lemma:2'
-1.877977 O b'+1:lemma:2'
-2.024414 O b'+1:lemma:1'
-2.949869 O b'-1:lemma::'
-3.377496 O b'-1:lemma:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.06622541546379261, 'c2': 0.005803516535443396}
best CV score:0.806003784483002
model size: 0.08M
best params:{'c1': 0.05263895498644954, 'c2': 0.02804820165832339}
best CV score:0.7981312956863408
model size: 0.09M
Flat F1: 0.8138835387377452
Flat F1: 0.7933473757323906
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.897 0.912 0.904 57
Med 0.891 0.860 0.875 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.939 0.742 0.829 62
Anti 0.571 0.444 0.500 9
Air 0.754 0.742 0.748 62
Anti 1.000 0.667 0.800 9
Strain 1.000 1.000 1.000 1
Gtype 0.876 0.802 0.837 106
Gtype 0.862 0.764 0.810 106
Substrain 0.000 0.000 0.000 1
Supp 0.886 0.684 0.772 136
Supp 0.865 0.662 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.901 0.758 0.814 480
avg / total 0.876 0.742 0.793 480
Top likely transitions:
Agit -> Agit 6.855330
OD -> OD 6.403256
Temp -> Temp 5.890045
Anti -> Anti 5.766779
Med -> Med 5.604768
Air -> Air 4.967782
O -> O 4.848357
Gversion -> Gversion 4.809684
Gtype -> Gtype 4.697823
Phase -> Phase 4.308635
Supp -> Supp 4.041417
Technique -> Technique 3.913590
pH -> pH 2.570273
O -> Supp 1.615671
Substrain -> Gtype 1.499561
Gtype -> Supp 1.421628
O -> Technique 1.327277
O -> Gtype 1.086040
Air -> O 0.813429
Technique -> Air 0.731728
O -> Temp 0.588704
O -> Anti 0.562550
Gtype -> pH 0.228949
Med -> O 0.224698
O -> Gversion 0.210688
Temp -> O 0.172212
O -> Med 0.102170
Gtype -> Air 0.095373
OD -> Phase 0.013336
Anti -> OD -0.004256
O -> OD -0.004531
Gtype -> Gversion -0.009932
Phase -> O -0.017336
O -> Phase -0.028487
Phase -> Technique -0.066036
Med -> Air -0.087994
Gtype -> Phase -0.099971
Supp -> Gversion -0.157806
Anti -> O -0.169383
Supp -> Temp -0.179380
Phase -> Air -0.231554
Supp -> OD -0.255465
Supp -> Anti -0.267111
Technique -> O -0.296565
OD -> Med -0.297702
Gtype -> Med -0.322957
Technique -> pH -0.337491
Supp -> O -0.351378
OD -> Gtype -0.357504
Gtype -> O -0.378451
OD -> OD 5.994059
Agit -> Agit 5.826737
Anti -> Anti 5.330943
Temp -> Temp 5.278651
Med -> Med 5.155905
Air -> Air 5.151014
O -> O 4.730130
Gversion -> Gversion 4.652874
Gtype -> Gtype 4.444237
Phase -> Phase 4.365358
Supp -> Supp 3.958563
Technique -> Technique 3.244440
pH -> pH 2.428819
Substrain -> Gtype 1.967210
O -> Supp 1.913743
Gtype -> Supp 1.740880
Air -> O 1.659369
O -> Gtype 1.420322
O -> Technique 1.309639
Technique -> Air 1.158163
O -> Temp 0.988819
O -> Anti 0.871063
Gtype -> pH 0.641717
Gtype -> Air 0.619648
Med -> O 0.556187
O -> Strain 0.535992
O -> Gversion 0.475143
OD -> Phase 0.435748
O -> Vess 0.303971
O -> pH 0.293252
Temp -> O 0.145912
Phase -> O 0.144558
O -> Med 0.109253
O -> Phase 0.077950
Supp -> O 0.021525
Technique -> Gversion -0.000001
Gversion -> O -0.000068
Phase -> Air -0.004607
OD -> Temp -0.005059
Gversion -> Supp -0.027403
O -> OD -0.027425
Gversion -> Technique -0.034949
Gtype -> Temp -0.040921
OD -> Anti -0.049114
Phase -> Med -0.090487
Air -> Gtype -0.096190
Anti -> Gtype -0.108763
Phase -> Supp -0.111803
Gversion -> Air -0.130125
OD -> Technique -0.144622
Top unlikely transitions:
O -> Gtype 1.086040
Air -> O 0.813429
Technique -> Air 0.731728
O -> Temp 0.588704
O -> Anti 0.562550
Gtype -> pH 0.228949
Med -> O 0.224698
O -> Gversion 0.210688
Temp -> O 0.172212
O -> Med 0.102170
Gtype -> Air 0.095373
OD -> Phase 0.013336
Anti -> OD -0.004256
O -> OD -0.004531
Gtype -> Gversion -0.009932
Phase -> O -0.017336
O -> Phase -0.028487
Phase -> Technique -0.066036
Med -> Air -0.087994
Gtype -> Phase -0.099971
Supp -> Gversion -0.157806
Anti -> O -0.169383
Supp -> Temp -0.179380
Phase -> Air -0.231554
Supp -> OD -0.255465
Supp -> Anti -0.267111
Technique -> O -0.296565
OD -> Med -0.297702
Gtype -> Med -0.322957
Technique -> pH -0.337491
Supp -> O -0.351378
OD -> Gtype -0.357504
Gtype -> O -0.378451
Supp -> Gtype -0.415119
Supp -> Technique -0.546983
Air -> Supp -0.580378
Air -> OD -0.591958
Technique -> Gtype -0.721938
OD -> Air -0.869884
Agit -> O -0.874071
Technique -> OD -0.901946
Gtype -> OD -0.968255
Supp -> Air -0.992187
OD -> O -1.076988
Gtype -> Anti -1.093167
O -> Air -1.094876
Supp -> Med -1.350916
Substrain -> O -1.483392
Phase -> OD -2.458856
Med -> Supp -2.624787
O -> OD -0.027425
Gversion -> Technique -0.034949
Gtype -> Temp -0.040921
OD -> Anti -0.049114
Phase -> Med -0.090487
Air -> Gtype -0.096190
Anti -> Gtype -0.108763
Phase -> Supp -0.111803
Gversion -> Air -0.130125
OD -> Technique -0.144622
Gtype -> O -0.160542
Anti -> Supp -0.167912
Technique -> O -0.178664
Med -> Air -0.260175
Air -> Supp -0.311671
Technique -> Supp -0.328788
Supp -> pH -0.334244
Gtype -> Phase -0.336838
OD -> Supp -0.350765
Supp -> Temp -0.356972
Supp -> Anti -0.385974
Gtype -> Technique -0.399293
Phase -> Technique -0.412086
Air -> Med -0.416009
Anti -> OD -0.424355
Supp -> Phase -0.431186
Supp -> Gversion -0.522870
Gtype -> Gversion -0.540870
OD -> Gtype -0.561901
Air -> OD -0.573132
Gtype -> Med -0.615085
OD -> Med -0.650842
Agit -> O -0.652718
Temp -> Med -0.665555
Supp -> OD -0.692627
Supp -> Air -0.710531
OD -> Air -0.714126
Gtype -> Anti -0.719364
O -> Air -0.739232
Supp -> Technique -0.742109
OD -> O -0.790102
Supp -> Gtype -0.840885
Gtype -> OD -0.945945
Substrain -> O -1.070813
Technique -> OD -1.137041
Technique -> pH -1.137389
Technique -> Gtype -1.148877
Supp -> Med -1.256562
Med -> Supp -1.723937
Phase -> OD -1.987759
Top positive:
9.234903 Supp b'lemma:Iron'
8.941229 Phase b'lemma:stationary'
8.612848 O b'lemma:_'
8.414915 Air b'lemma:anaerobic'
8.110054 Air b'lemma:aerobic'
7.668526 O b'lemma:1'
7.617369 Supp b'lemma:nitrate'
7.396629 Technique b'lemma:ChIP-exo'
7.004694 O b'lemma:rpob'
6.951208 Strain b'lemma:k-12'
6.929222 Air b'-1:lemma:ChIP-Seq'
6.919087 Supp b'lemma:pq'
6.729357 Med b'lemma:MOPS'
6.630951 Technique b'lemma:chipseq'
6.338936 Gversion b'lemma:asm584v2'
6.275492 O b'-1:lemma:tag'
6.112382 Gtype b'lemma:\xce\xb4cra'
6.001427 O b'lemma:3'
5.997947 O b'lemma:2'
5.921853 O b'lemma:\xcf\x8332'
5.917190 Gtype b'lemma:flag-tag'
5.917190 Gtype b'-1:lemma:c-terminal'
5.881286 Substrain b'lemma:mg1655'
5.839915 Phase b'lemma:mid-log'
5.810496 Air b'lemma:Aerobic'
5.761122 O b'lemma:Custom'
5.570827 O b'lemma:rep1'
5.482824 Med b'lemma:LB'
5.430575 Supp b'+1:lemma:\xc2\xb5m'
5.428880 O b'lemma:rep2'
5.402169 O b'-1:lemma:ChIP-exo'
5.366372 O b'lemma:Cra'
5.339186 Supp b'lemma:nh4cl'
5.259341 Gtype b'lemma:arca8myc'
5.256666 Gtype b'lemma:type'
5.250724 O b'lemma:rep3'
5.250467 Med b'lemma:lb'
5.157840 Supp b'lemma:rifampicin'
5.124923 O b'lemma:b'
5.111909 Gtype b'lemma:delta-arca'
5.091556 OD b'+1:lemma:stationary'
5.048220 Supp b'lemma:glucose'
5.001772 O b'postag:IN'
4.994648 Gversion b'lemma:nc'
4.925252 Gtype b'lemma:fnr8myc'
4.905784 OD b'lemma:od450'
4.901181 Gtype b'+1:lemma:type'
4.837803 Technique b'lemma:rna-seq'
4.828361 Gtype b'lemma:wt'
4.778406 O b'lemma:a'
4.678498 Supp b'lemma:acetate'
4.667864 Anti b'lemma:none'
4.612775 Technique b'lemma:rnaseq'
4.597784 Supp b'-1:lemma:Cra'
4.596321 Technique b'lemma:ChIP-Seq'
4.580488 O b'-1:lemma:0.3-0.35'
4.559265 Gtype b'-1:lemma:\xe2\x88\x86'
4.543048 Supp b'lemma:no3'
4.494990 Supp b'lemma:Fe'
4.475916 O b'lemma:-'
4.465899 Anti b'lemma:seqa'
4.445546 Gtype b'lemma:delta-fnr'
4.372585 OD b'lemma:od600'
4.346955 Technique b'lemma:chip-seq'
4.301785 O b'lemma:or'
4.260295 Gtype b'lemma:\xce\xb4fur'
4.236090 O b'lemma:for'
4.225287 O b'lemma:.'
4.225287 O b'postag:.'
4.161720 Supp b'lemma:dpd'
4.122022 O b'+1:lemma:od600'
4.073219 Vess b'lemma:flask'
4.073219 Vess b'-1:lemma:warm'
4.068384 O b'-1:lemma:anaerobic'
4.063188 Supp b'lemma:arginine'
4.026011 O b'-1:lemma:Aerobic'
4.023826 O b'postag::'
4.014353 Med b'+1:lemma:0.4'
3.983642 O b'lemma:chip'
3.937745 O b'lemma:CEL'
3.912596 Supp b'+1:lemma:1'
3.911905 Anti b'lemma:anti-myc'
3.908162 O b'-1:lemma:glucose'
3.843811 Supp b'lemma:fructose'
3.821238 Gtype b'lemma:nsrr'
3.805915 Gversion b'-1:lemma:nc'
3.773446 Gversion b'lemma:chip-seq'
3.714736 Gtype b'lemma:\xce\xb4ompr'
3.700490 O b'-1:lemma:type'
3.624739 O b'+1:postag:RB'
3.602969 Strain b'+1:lemma:substr'
3.596045 Med b'+1:lemma:minimal'
3.588702 O b'-1:lemma:lb'
3.537935 O b'+1:lemma:o.d.'
3.533153 Gversion b'lemma:000913'
3.531194 Temp b'lemma:\xc2\xb0c'
3.520259 pH b'lemma:ph5'
3.520259 pH b'+1:lemma:.5'
3.511450 Gtype b'lemma:\xe2\x88\x86'
3.509713 Technique b'-1:lemma:IP'
3.496996 Med b'lemma:m63'
3.478233 Anti b'+1:lemma:antibody'
3.475022 Temp b'-1:lemma:sample'
3.455068 Supp b'-1:lemma:+'
3.449758 Anti b'lemma:anti-rpos'
3.439491 Supp b'+1:lemma:2'
3.415465 O b'lemma:oxyr'
3.385223 Gtype b'lemma:wild-type'
3.352842 O b'postag:VBN'
3.343983 Gtype b'+1:lemma:ph5'
3.343718 Air b'postag:RB'
3.343342 Supp b'lemma:nacl'
3.321016 Gtype b'-1:lemma:ptac'
3.317465 Gtype b'-1:lemma:rpob'
3.298959 O b'lemma:with'
3.236711 O b'lemma:s'
3.233948 Temp b'-1:lemma:\xcf\x8332'
3.232171 Supp b'+1:lemma:hour'
3.226682 O b'-1:lemma:0.3'
3.213829 Gversion b'lemma:u00096'
3.213829 Gversion b'+1:lemma:.2'
3.176657 O b'lemma:ompr'
3.173449 Gversion b'lemma:.2'
3.173449 Gversion b'-1:lemma:u00096'
3.148343 Gtype b'+1:lemma:with'
3.113186 O b'lemma:at'
3.099394 Gtype b'lemma:\xce\xb4soxs'
3.081492 Gtype b'lemma:pk4854'
3.081097 Supp b'+1:lemma:_'
3.076137 Air b'lemma:Anaerobic'
3.073681 O b'lemma:Lrp'
3.064586 Phase b'+1:lemma:for'
3.047746 O b'+1:lemma:chip-seq'
3.047210 Gtype b'lemma:ptac'
3.045585 Phase b'-1:lemma:until'
3.043072 O b'-1:lemma:dpd'
3.032395 Gtype b'lemma:WT'
3.021945 Technique b'+1:lemma:chip-exo'
3.010904 Supp b'lemma:iptg'
3.001563 Anti b'+1:lemma:polyclonal'
2.979219 Supp b'lemma:Leu'
2.976675 O b'lemma:chip-arca'
2.972333 Gtype b'lemma:deltaseqa'
2.972333 Gtype b'-1:lemma:old'
2.971020 O b'lemma:affyexp'
2.960652 Air b'lemma:anerobically'
2.938684 Supp b'+1:lemma:Deficient'
2.913605 Technique b'-1:lemma:chip-exo'
2.890017 O b'lemma:argr'
2.883731 O b'+1:lemma:sparging'
2.880763 Temp b'-1:lemma:43'
2.874818 Med b'-1:lemma:ml'
2.860187 pH b'lemma:.5'
2.860187 pH b'-1:lemma:ph5'
2.852362 Gtype b'+1:lemma:pq'
2.822626 O b'lemma:soxs'
2.822626 O b'lemma:soxr'
2.796727 Temp b'lemma:43'
2.764833 Med b'lemma:L'
2.764833 Med b'+1:lemma:broth'
2.762054 O b'+1:postag:NNP'
2.755377 O b'-1:lemma:stpa'
2.737365 Supp b'-1:lemma:\xc2\xb5m'
2.727294 Temp b'lemma:37'
2.708825 Med b'-1:lemma:LB'
2.705181 O b'-1:lemma:\xc2\xb0c'
2.692331 O b'+1:lemma:pq'
2.691434 Substrain b'+1:lemma:phtpg'
2.690410 O b'lemma:purr'
2.677844 Technique b'+1:lemma:rna-seq'
2.650316 Technique b'-1:lemma:input'
2.638625 Supp b'lemma:methanol'
2.634944 Med b'+1:lemma:contain'
2.625097 Supp b'lemma:Adenine'
2.623356 O b'-1:lemma:l1'
2.607859 O b'postag:DT'
2.598485 Med b'+1:lemma:2.0'
2.589920 Gtype b'-1:lemma:phtpg'
2.581102 Med b'lemma:glucose'
2.575292 Temp b'-1:lemma:37'
2.558206 Gtype b'lemma:\xce\xb4soxr'
2.550759 Gtype b'+1:lemma:flagtag'
2.550220 Gtype b'lemma:\xce\xb4oxyr'
2.549389 Gtype b'+1:lemma:aerobic'
2.517172 Supp b'lemma:leucine'
2.411127 O b'-1:lemma:media'
2.376812 O b'lemma:2-3'
2.368251 Med b'lemma:broth'
2.368251 Med b'-1:lemma:L'
2.353760 Gtype b'-1:lemma:_'
2.331107 O b'lemma:culture'
2.315361 Med b'postag:NNP'
2.299371 O b'lemma:Fur'
2.288936 Supp b'+1:lemma:iptg'
2.280717 Air b'lemma:anaerobically'
2.278786 Air b'-1:lemma:-'
2.266514 O b'lemma:genotype/variation'
2.259722 OD b'lemma:0.3'
2.256007 Technique b'postag:NNP'
2.224072 Air b'+1:lemma:at'
7.644011 O b'lemma:_'
6.383258 O b'lemma:1'
5.640911 Supp b'lemma:Iron'
5.580127 Air b'lemma:anaerobic'
5.538092 O b'lemma:2'
5.534391 Phase b'lemma:stationary'
5.531429 Strain b'lemma:k-12'
5.334010 Air b'lemma:aerobic'
5.315871 Technique b'lemma:ChIP-exo'
5.203179 O b'lemma:rpob'
5.145510 Technique b'lemma:chipseq'
5.013569 O b'lemma:3'
4.948545 Supp b'lemma:pq'
4.940685 Phase b'lemma:mid-log'
4.780713 O b'postag:IN'
4.581631 Supp b'lemma:glucose'
4.547719 O b'lemma:rep1'
4.536211 Supp b'lemma:nh4cl'
4.513208 Gtype b'lemma:\xce\xb4cra'
4.467672 Gversion b'lemma:asm584v2'
4.425282 Substrain b'lemma:mg1655'
4.379515 Supp b'lemma:nitrate'
4.372720 Air b'-1:lemma:ChIP-Seq'
4.334136 O b'lemma:rep2'
4.323892 Gtype b'lemma:flag-tag'
4.323892 Gtype b'-1:lemma:c-terminal'
4.316408 Gtype b'lemma:wt'
4.285662 O b'-1:lemma:tag'
4.263890 Gtype b'lemma:arca8myc'
4.176799 Supp b'+1:lemma:\xc2\xb5m'
4.127621 O b'lemma:Cra'
4.095187 Air b'lemma:Aerobic'
4.064385 O b'lemma:rep3'
4.064266 Med b'lemma:LB'
4.025844 Med b'lemma:MOPS'
4.002900 Gtype b'-1:lemma:\xe2\x88\x86'
3.910979 Supp b'lemma:acetate'
3.828208 O b'lemma:b'
3.803370 Med b'lemma:lb'
3.794793 Technique b'lemma:rna-seq'
3.753341 O b'lemma:Custom'
3.719844 O b'lemma:a'
3.708016 Gtype b'lemma:delta-arca'
3.699048 O b'postag::'
3.664175 Supp b'lemma:no3'
3.664047 O b'lemma:\xcf\x8332'
3.607483 Supp b'lemma:Fe'
3.591964 O b'lemma:.'
3.591964 O b'postag:.'
3.579521 Anti b'lemma:none'
3.563841 Gtype b'lemma:fnr8myc'
3.562162 O b'-1:lemma:ChIP-exo'
3.561181 Technique b'lemma:chip-seq'
3.510825 OD b'lemma:od600'
3.412358 O b'+1:postag:RB'
3.407419 Anti b'lemma:seqa'
3.382318 Gtype b'lemma:\xe2\x88\x86'
3.361106 O b'-1:lemma:Aerobic'
3.358125 Supp b'lemma:rifampicin'
3.350656 O b'+1:lemma:od600'
3.328644 O b'lemma:CEL'
3.323042 Technique b'lemma:rnaseq'
3.290496 Supp b'lemma:dpd'
3.262134 OD b'lemma:od450'
3.253879 Supp b'-1:lemma:Cra'
3.220056 Gtype b'lemma:type'
3.206772 O b'lemma:-'
3.203626 Gversion b'lemma:nc'
3.187192 Gtype b'lemma:delta-fnr'
3.177788 Gtype b'+1:lemma:type'
3.162794 O b'lemma:with'
3.147705 Gversion b'lemma:chip-seq'
3.138667 Gtype b'+1:lemma:with'
3.108383 O b'postag:VBN'
3.087768 Supp b'+1:lemma:1'
3.068972 Med b'+1:lemma:0.4'
3.017094 Supp b'+1:lemma:Deficient'
3.016316 O b'-1:lemma:0.3-0.35'
2.982857 pH b'lemma:ph5'
2.982857 pH b'+1:lemma:.5'
2.980416 Gtype b'lemma:nsrr'
2.966737 Gtype b'lemma:\xce\xb4fur'
2.958372 Supp b'lemma:fructose'
2.936801 Technique b'lemma:ChIP-Seq'
2.931957 Vess b'lemma:flask'
2.931957 Vess b'-1:lemma:warm'
2.915047 Supp b'+1:lemma:2'
2.894349 O b'-1:lemma:anaerobic'
2.885376 O b'lemma:for'
2.880024 Supp b'lemma:arginine'
2.839562 Gtype b'lemma:wild-type'
2.812453 Med b'lemma:m63'
2.747567 Technique b'-1:lemma:IP'
2.716324 O b'lemma:s'
2.710552 O b'lemma:or'
2.702444 Anti b'lemma:anti-myc'
2.699635 Temp b'lemma:\xc2\xb0c'
2.695860 Anti b'+1:lemma:antibody'
2.689645 Supp b'+1:lemma:_'
2.688117 Gversion b'lemma:u00096'
2.688117 Gversion b'+1:lemma:.2'
2.683722 Air b'postag:RB'
2.679633 O b'-1:lemma:glucose'
2.678210 Gversion b'lemma:.2'
2.678210 Gversion b'-1:lemma:u00096'
2.667116 O b'lemma:affyexp'
2.664622 Gversion b'-1:lemma:nc'
2.661661 O b'-1:lemma:type'
2.656183 O b'lemma:oxyr'
2.655810 O b'-1:lemma:lb'
2.647789 O b'lemma:ompr'
2.637892 O b'lemma:chip-arca'
2.603431 Med b'+1:lemma:minimal'
2.589326 Gtype b'-1:lemma:ptac'
2.588251 Gtype b'lemma:WT'
2.566964 Strain b'+1:lemma:substr'
2.543192 O b'-1:lemma:stpa'
2.539508 Gtype b'+1:lemma:flagtag'
2.514377 O b'+1:lemma:pq'
2.486626 Gtype b'+1:lemma:pq'
2.461810 OD b'+1:lemma:stationary'
2.450698 Gtype b'lemma:\xce\xb4soxs'
2.426559 Gtype b'lemma:\xce\xb4ompr'
2.397900 Gversion b'lemma:000913'
2.394523 Supp b'lemma:nacl'
2.361674 O b'lemma:argr'
2.356992 Air b'lemma:Anaerobic'
2.355669 Temp b'-1:lemma:43'
2.353172 Med b'+1:lemma:2.0'
2.352039 O b'+1:lemma:anti-fur'
2.331818 O b'+1:lemma:o.d.'
2.323083 Temp b'lemma:43'
2.321749 Phase b'+1:lemma:for'
2.320521 O b'lemma:purr'
2.319735 pH b'+1:postag:CD'
2.319685 Temp b'-1:lemma:37'
2.310705 Supp b'lemma:Leu'
2.304466 Gtype b'+1:lemma:ph5'
2.301687 Gtype b'lemma:pk4854'
2.298021 Temp b'-1:lemma:sample'
2.282513 O b'lemma:Lrp'
2.279986 Gtype b'lemma:deltaseqa'
2.279986 Gtype b'-1:lemma:old'
2.277445 O b'lemma:chip'
2.262228 Supp b'lemma:iptg'
2.240490 Supp b'+1:lemma:hour'
2.233231 O b'postag:SYM'
2.231698 Technique b'-1:lemma:input'
2.231669 O b'lemma:Fur'
2.229136 O b'postag:CC'
2.217992 Temp b'lemma:37'
2.213326 Gtype b'lemma:ptac'
2.205755 Temp b'+1:lemma:\xc2\xb0c'
2.205719 O b'+1:lemma:chip-seq'
2.201154 Technique b'-1:lemma:chip-exo'
2.196645 Air b'lemma:anaerobically'
2.188408 Supp b'-1:lemma:+'
2.180623 Supp b'lemma:methanol'
2.171324 Supp b'lemma:Adenine'
2.152039 O b'+1:lemma:mid-log'
2.130944 Technique b'+1:lemma:chip-exo'
2.125495 Substrain b'+1:lemma:phtpg'
2.122905 Anti b'lemma:anti-rpos'
2.120769 Gtype b'+1:lemma:aerobic'
2.119993 O b'postag:DT'
2.097185 Air b'-1:lemma:-'
2.073983 Temp b'-1:lemma:\xcf\x8332'
2.068525 Gversion b'+1:lemma:000913'
2.068199 OD b'-1:lemma:~'
2.065247 Med b'+1:lemma:+'
2.062691 Technique b'postag:NNP'
2.062117 O b'lemma:soxs'
2.062117 O b'lemma:soxr'
2.060943 O b'lemma:genotype/variation'
2.059647 Gtype b'-1:lemma:rpob'
2.054988 Phase b'-1:lemma:until'
2.053193 pH b'lemma:.5'
2.053193 pH b'-1:lemma:ph5'
2.050691 Supp b'-1:lemma:\xc2\xb5m'
2.046419 Med b'lemma:glucose'
2.038553 O b'-1:lemma:\xc2\xb0c'
2.035969 Med b'postag:NNP'
2.034678 Phase b'lemma:phase'
2.030470 Phase b'-1:lemma:mid-log'
2.021890 Air b'-1:postag::'
2.005361 Air b'-1:lemma:co2'
1.997853 Supp b'-1:lemma:with'
1.995559 O b'-1:lemma:0.3'
1.991909 Gversion b'lemma:_'
1.982945 Gtype b'-1:lemma:_'
1.980389 Med b'lemma:L'
1.980389 Med b'+1:lemma:broth'
1.966184 O b'lemma:chip-fnr'
1.958899 O b'-1:lemma:l1'
1.952668 Gtype b'-1:lemma::'
1.932594 O b'postag:VBG'
1.930427 Med b'-1:lemma:ml'
1.925115 O b'lemma:culture'
1.919503 Vess b'-1:postag:VBN'
1.917264 Supp b'+1:lemma:and'
Top negative:
-0.002409 Med b'lemma:-lrb-'
-0.002765 O b'+1:lemma:minimal'
-0.002819 Med b'postag:-LRB-'
-0.002883 Supp b'-1:lemma:-'
-0.003857 Agit b'postag:NN'
-0.005100 Air b'-1:lemma:anaerobically'
-0.007289 O b'lemma:lb'
-0.010248 O b'lemma:mg/ml'
-0.010248 O b'-1:lemma:150'
-0.010774 Supp b'+1:postag:CD'
-0.011526 Air b'-1:lemma:95'
-0.011818 Air b'-1:postag:CC'
-0.012619 Supp b'lemma:mm'
-0.013393 O b'-1:lemma:1'
-0.013525 O b'+1:lemma:rep1'
-0.013581 Gtype b'-1:postag:SYM'
-0.013782 OD b'+1:lemma:-lrb-'
-0.015901 OD b'-1:postag:DT'
-0.015963 O b'-1:lemma:70'
-0.016924 OD b'+1:postag:-LRB-'
-0.019258 O b'lemma:m63'
-0.020349 Gversion b'-1:postag:NN'
-0.021440 OD b'+1:lemma:0.4'
-0.022594 Air b'-1:lemma:or'
-0.022941 OD b'-1:lemma:a'
-0.026771 O b'lemma:glucose'
-0.027346 O b'+1:lemma:25'
-0.028054 OD b'lemma:~'
-0.029216 Gtype b'+1:lemma:cra'
-0.030932 Gtype b'-1:postag:NN'
-0.031890 O b'+1:lemma:~'
-0.033995 O b'+1:lemma:95'
-0.035517 O b'-1:lemma:-lrb-'
-0.036049 O b'lemma:pahse'
-0.036135 O b'lemma:purify'
-0.036681 Gtype b'-1:postag:CD'
-0.038170 Med b'-1:lemma:m63'
-0.042355 O b'+1:lemma:antibody'
-0.042769 O b'+1:lemma:0.4'
-0.043812 O b'-1:lemma:25'
-0.050331 Phase b'-1:lemma:at'
-0.051370 O b'+1:lemma:5'
-0.052602 Phase b'+1:postag:NN'
-0.053544 OD b'+1:postag:CD'
-0.055596 O b'+1:lemma:o2'
-0.056365 O b'lemma:25'
-0.065474 O b'-1:lemma:o2'
-0.070061 Gtype b'-1:postag:DT'
-0.070234 O b'-1:lemma:the'
-0.072402 O b'+1:lemma:shake'
-0.079220 Strain b'+1:postag:NN'
-0.079451 O b'+1:lemma:grow'
-0.084137 Gtype b'lemma:_'
-0.085976 O b'+1:lemma:mm'
-0.093102 Med b'+1:postag:CC'
-0.095082 Air b'postag:CD'
-0.097194 O b'lemma:o2'
-0.101822 O b'-1:lemma:30'
-0.102523 O b'-1:postag:VBN'
-0.107653 O b'lemma:cell'
-0.112633 Supp b'-1:postag:NN'
-0.116970 O b'lemma:grow'
-0.120130 O b'lemma:30'
-0.121820 Supp b'+1:postag:IN'
-0.124237 Supp b'-1:postag:NNP'
-0.125482 O b'-1:lemma:mm'
-0.128019 O b'+1:lemma:300'
-0.129344 O b'lemma:\xc2\xb0c'
-0.144557 Med b'-1:postag:NN'
-0.144770 O b'-1:postag:IN'
-0.146162 O b'-1:lemma:of'
-0.149674 Gtype b'+1:lemma:\xe2\x88\x86'
-0.154228 OD b'postag:JJ'
-0.167420 O b'lemma:n2'
-0.171707 O b'lemma:co2'
-0.172528 O b'lemma:medium'
-0.179654 Med b'+1:postag:NNS'
-0.184135 O b'-1:lemma:n2'
-0.189770 O b'+1:lemma:-rrb-'
-0.192678 O b'lemma:aerobically'
-0.195762 O b'-1:lemma:with'
-0.196208 O b'-1:lemma:ml'
-0.204813 Gtype b'-1:lemma:mg1655'
-0.205462 O b'lemma:mg1655'
-0.206806 O b'-1:lemma:e.'
-0.207893 O b'lemma:minimal'
-0.224766 Temp b'postag:JJ'
-0.225885 O b'+1:lemma:.'
-0.225885 O b'+1:postag:.'
-0.227519 O b'lemma:e.'
-0.236166 O b'-1:lemma:rifampicin'
-0.247403 O b'-1:lemma:0.2'
-0.259717 Phase b'-1:postag:NN'
-0.263053 Supp b'lemma:and'
-0.270443 O b'-1:postag:-LRB-'
-0.283380 O b'-1:lemma:um'
-0.283380 O b'+1:lemma:paraquat'
-0.289228 Med b'postag:CD'
-0.290905 O b'-1:lemma:0.1'
-0.295102 OD b'+1:lemma:and'
-0.300641 O b'-1:lemma:until'
-0.306863 O b'+1:lemma:phase'
-0.322631 O b'lemma:phase'
-0.347838 O b'+1:lemma:until'
-0.351130 O b'+1:lemma:_'
-0.365836 O b'-1:lemma:\xe2\x88\x86'
-0.367298 Anti b'+1:postag:JJ'
-0.375233 Gtype b'postag:CD'
-0.377830 Supp b'postag:CC'
-0.381771 O b'postag:RB'
-0.385165 Technique b'-1:lemma::'
-0.387729 O b'+1:postag:IN'
-0.405861 O b'+1:postag:-RRB-'
-0.419130 O b'-1:lemma:from'
-0.425366 O b'-1:lemma:od600'
-0.432532 O b'-1:lemma:cra'
-0.441409 Temp b'postag:NN'
-0.447218 O b'+1:lemma:arginine'
-0.454986 O b'+1:lemma:%'
-0.469664 Med b'+1:postag:IN'
-0.481296 Technique b'-1:postag::'
-0.482628 Gversion b'+1:postag:NN'
-0.484056 O b'-1:lemma:grow'
-0.485046 pH b'postag:NN'
-0.490017 Med b'+1:postag:NN'
-0.496154 O b'lemma:od600'
-0.500947 Supp b'+1:postag:VBN'
-0.517928 O b'+1:lemma:cell'
-0.520851 O b'-1:lemma:sample'
-0.520873 OD b'+1:postag:CC'
-0.521577 O b'+1:lemma:\xc2\xb0c'
-0.525190 Anti b'+1:lemma:anti-fur'
-0.527700 O b'-1:lemma:mid-log'
-0.533028 O b'lemma:dissolve'
-0.550892 O b'lemma:150'
-0.550892 O b'+1:lemma:mg/ml'
-0.551731 Phase b'-1:postag:JJ'
-0.571169 O b'+1:lemma:0.3'
-0.600234 O b'postag:VBP'
-0.623446 O b'lemma:anaerobic'
-0.655760 Gtype b'lemma:delta'
-0.668609 Supp b'+1:lemma:rifampicin'
-0.673715 O b'lemma:\xce\xb4fur'
-0.724036 OD b'+1:postag:NN'
-0.742000 O b'+1:postag:NNS'
-0.743016 O b'+1:lemma:c'
-0.767018 O b'-1:lemma:~'
-0.767765 Air b'-1:postag:JJ'
-0.779655 O b'lemma:media'
-0.790170 O b'lemma:\xe2\x88\x86'
-0.816065 O b'lemma:fecl2'
-0.817183 O b'lemma:dpd'
-0.835270 O b'lemma:0.3'
-0.843288 OD b'lemma:-lrb-'
-0.853171 O b'+1:lemma:fecl2'
-0.889568 O b'lemma:0.2'
-0.905209 OD b'postag:-LRB-'
-0.911568 O b'lemma:anaerobically'
-0.915420 O b'lemma:of'
-0.950583 Temp b'+1:lemma:to'
-0.950583 Temp b'+1:postag:TO'
-0.951305 O b'lemma:20'
-0.951858 O b'-1:lemma:co2'
-1.045949 O b'lemma:0.1'
-1.056174 O b'+1:lemma:supplement'
-1.088532 Supp b'+1:lemma:acetate'
-1.092708 O b'+1:postag:VBG'
-1.103190 O b'-1:postag:VBG'
-1.119328 O b'lemma:2h'
-1.119328 O b'-1:lemma:additional'
-1.131219 Supp b'-1:lemma:%'
-1.142227 O b'-1:lemma:rpob'
-1.149700 O b'lemma:mid-log'
-1.157098 Med b'-1:postag:IN'
-1.158833 O b'-1:lemma:dissolve'
-1.158833 O b'+1:lemma:methanol'
-1.159433 O b'-1:postag::'
-1.197832 Air b'postag:NN'
-1.224684 O b'-1:lemma:37'
-1.250547 O b'+1:lemma:g/l'
-1.287510 O b'+1:lemma:at'
-1.343885 O b'+1:lemma:+'
-1.550316 Air b'+1:postag:JJ'
-1.550420 O b'+1:lemma:in'
-1.655179 O b'-1:lemma:IP'
-1.671646 Anti b'postag:NNP'
-1.676942 O b'lemma:37'
-1.709933 O b'lemma:rifampicin'
-1.740594 O b'-1:lemma:nsrr'
-1.813332 O b'lemma:wt'
-1.837591 Supp b'postag:JJ'
-1.875538 O b'-1:lemma:ompr'
-1.956251 O b'+1:lemma:hour'
-2.104216 O b'-1:lemma:2'
-2.173171 Phase b'postag:JJ'
-2.198016 O b'+1:lemma:2'
-2.302343 O b'lemma:methanol'
-2.686054 O b'+1:lemma:1'
-3.664514 O b'-1:lemma:_'
-4.711592 O b'-1:lemma::'
-0.017822 O b'+1:lemma:or'
-0.020587 OD b'+1:lemma:-lrb-'
-0.021122 Supp b'-1:lemma:-'
-0.021949 Air b'-1:postag:CC'
-0.024119 Gtype b'+1:lemma:2'
-0.033734 O b'lemma:25'
-0.035304 OD b'+1:postag:CD'
-0.036590 O b'+1:lemma:25'
-0.037058 Gtype b'-1:postag:NNP'
-0.039077 O b'-1:postag:IN'
-0.044840 OD b'+1:postag:-LRB-'
-0.045413 O b'+1:lemma:mm'
-0.045740 O b'+1:lemma:-lcb-'
-0.046719 O b'-1:lemma:the'
-0.047082 O b'+1:lemma:grow'
-0.048829 O b'lemma:mg/ml'
-0.048829 O b'-1:lemma:150'
-0.049033 Air b'postag:CC'
-0.054246 Gtype b'+1:lemma:b'
-0.057570 O b'+1:lemma:from'
-0.060387 O b'+1:lemma:phase'
-0.065418 O b'+1:lemma:strain'
-0.068947 O b'-1:lemma:delta'
-0.070877 O b'+1:lemma:mg1655'
-0.071913 O b'lemma:medium'
-0.073052 OD b'+1:lemma:0.4'
-0.083440 O b'+1:lemma:o2'
-0.083866 Supp b'-1:postag:NNP'
-0.086428 O b'lemma:cell'
-0.091253 O b'-1:lemma:with'
-0.092801 O b'-1:lemma:of'
-0.096980 O b'+1:lemma:5'
-0.102374 O b'-1:postag:DT'
-0.109084 Med b'-1:postag:NN'
-0.110663 O b'+1:lemma:-rrb-'
-0.111886 O b'-1:lemma:iptg'
-0.115712 O b'+1:lemma:shake'
-0.116030 OD b'lemma:~'
-0.118522 O b'+1:lemma:antibody'
-0.128341 Phase b'+1:postag:NN'
-0.134706 Gversion b'+1:postag:NN'
-0.136331 Gtype b'+1:lemma:cra'
-0.136540 Gtype b'+1:postag:NNS'
-0.140781 Med b'+1:postag:NN'
-0.141957 O b'-1:lemma:fresh'
-0.142025 Technique b'-1:lemma::'
-0.149157 O b'lemma:o2'
-0.156748 O b'-1:lemma:25'
-0.157167 O b'-1:lemma:mm'
-0.158228 O b'-1:lemma:chip-exo'
-0.160848 O b'+1:lemma:b'
-0.164065 Phase b'-1:lemma:at'
-0.166899 O b'+1:lemma:until'
-0.170597 Supp b'+1:lemma:glucose'
-0.179542 Med b'+1:postag:NNS'
-0.182950 O b'-1:lemma:n2'
-0.183589 O b'lemma:nacl'
-0.187748 Supp b'lemma:and'
-0.194897 Air b'-1:lemma:or'
-0.195731 O b'-1:lemma:e.'
-0.198544 O b'-1:lemma:grow'
-0.202051 O b'-1:postag:VBN'
-0.206509 Anti b'+1:postag:JJ'
-0.209400 Supp b'-1:lemma:and'
-0.216443 O b'-1:lemma:-lrb-'
-0.219626 Supp b'+1:postag:IN'
-0.222298 O b'+1:lemma:0.4'
-0.224028 Supp b'-1:postag:VBG'
-0.227080 Gtype b'postag:CD'
-0.240844 O b'+1:lemma:_'
-0.248019 O b'+1:lemma:.'
-0.248019 O b'+1:postag:.'
-0.252029 O b'lemma:n2'
-0.254610 O b'lemma:30'
-0.266756 Temp b'-1:lemma:\xc2\xb0c'
-0.270952 O b'lemma:co2'
-0.272046 O b'lemma:grow'
-0.282947 O b'lemma:\xc2\xb0c'
-0.283749 O b'-1:lemma:um'
-0.283749 O b'+1:lemma:paraquat'
-0.285506 O b'-1:postag:-LRB-'
-0.286217 OD b'+1:postag:CC'
-0.286759 Gtype b'-1:postag:CD'
-0.288124 pH b'postag:NN'
-0.308133 O b'lemma:e.'
-0.310367 O b'-1:lemma:mid-log'
-0.312184 O b'-1:lemma:20'
-0.313374 Air b'postag:CD'
-0.319126 O b'lemma:minimal'
-0.319471 Supp b'postag:CC'
-0.340367 O b'lemma:phase'
-0.348342 O b'+1:lemma:cell'
-0.348640 O b'-1:lemma:g/l'
-0.348662 Temp b'postag:JJ'
-0.352296 O b'-1:lemma:0.1'
-0.359633 O b'-1:lemma:from'
-0.362174 O b'+1:lemma:%'
-0.363822 O b'postag:RB'
-0.381740 Supp b'+1:postag:VBN'
-0.396234 O b'-1:lemma:rifampicin'
-0.397794 Med b'-1:postag:IN'
-0.400686 O b'lemma:mg1655'
-0.402514 Gtype b'lemma:_'
-0.409362 O b'-1:lemma:30'
-0.421905 Gtype b'-1:postag:SYM'
-0.422755 O b'+1:postag:IN'
-0.428375 O b'lemma:m63'
-0.433573 O b'+1:postag:-RRB-'
-0.446895 Temp b'postag:NN'
-0.463213 O b'+1:lemma:rep1'
-0.476889 O b'+1:lemma:Aerobic'
-0.478443 Gtype b'lemma:delta'
-0.482787 Gtype b'+1:lemma:\xe2\x88\x86'
-0.485877 O b'lemma:lb'
-0.514632 O b'-1:lemma:until'
-0.518078 Gtype b'-1:postag:DT'
-0.525623 O b'lemma:media'
-0.525890 Technique b'-1:postag::'
-0.549894 Supp b'-1:lemma:%'
-0.558083 O b'-1:lemma:o2'
-0.565131 Temp b'+1:lemma:to'
-0.565131 Temp b'+1:postag:TO'
-0.574257 OD b'+1:lemma:and'
-0.594559 OD b'+1:postag:NN'
-0.604948 O b'-1:lemma:od600'
-0.612232 O b'+1:lemma:arginine'
-0.614534 O b'lemma:purify'
-0.619152 O b'lemma:150'
-0.619152 O b'+1:lemma:mg/ml'
-0.621956 OD b'lemma:-lrb-'
-0.622235 O b'-1:lemma:cra'
-0.632733 Med b'+1:postag:IN'
-0.667988 O b'+1:lemma:\xc2\xb0c'
-0.701676 O b'+1:lemma:0.3'
-0.702720 Anti b'+1:lemma:anti-fur'
-0.715537 O b'+1:lemma:300'
-0.717529 O b'-1:lemma:\xe2\x88\x86'
-0.723154 O b'+1:postag:NNS'
-0.743940 O b'lemma:of'
-0.750458 OD b'postag:-LRB-'
-0.756537 O b'lemma:dissolve'
-0.780462 O b'lemma:od600'
-0.795527 O b'lemma:0.1'
-0.801265 O b'+1:lemma:c'
-0.803646 O b'lemma:20'
-0.821445 O b'-1:lemma:1'
-0.826457 O b'-1:lemma:~'
-0.832694 O b'lemma:dpd'
-0.832795 Supp b'+1:lemma:rifampicin'
-0.871325 O b'-1:lemma:0.2'
-0.881067 O b'-1:lemma:co2'
-0.888371 Phase b'postag:JJ'
-0.896433 Supp b'+1:lemma:acetate'
-0.904708 Air b'-1:postag:JJ'
-0.921787 O b'lemma:\xe2\x88\x86'
-0.945637 O b'-1:postag:VBG'
-0.954150 O b'+1:lemma:fecl2'
-0.973569 O b'lemma:0.3'
-0.992597 O b'lemma:anaerobic'
-1.028824 O b'lemma:anaerobically'
-1.041899 O b'lemma:0.2'
-1.042250 O b'lemma:k-12'
-1.074389 O b'+1:lemma:supplement'
-1.076645 O b'lemma:2h'
-1.076645 O b'-1:lemma:additional'
-1.091822 O b'-1:lemma:dissolve'
-1.091822 O b'+1:lemma:methanol'
-1.154399 O b'lemma:mid-log'
-1.157754 O b'lemma:\xce\xb4fur'
-1.158951 OD b'postag:JJ'
-1.162611 O b'+1:lemma:g/l'
-1.185695 O b'+1:lemma:in'
-1.190815 Phase b'-1:postag:JJ'
-1.231014 O b'lemma:fecl2'
-1.238272 O b'+1:postag:VBG'
-1.266384 O b'lemma:37'
-1.270093 O b'postag:VBP'
-1.297913 O b'-1:lemma:rpob'
-1.310368 O b'+1:lemma:at'
-1.315321 O b'-1:lemma:sample'
-1.439337 O b'-1:lemma:37'
-1.450525 O b'-1:lemma:ml'
-1.462231 O b'-1:postag::'
-1.474342 O b'-1:lemma:ompr'
-1.487270 O b'lemma:wt'
-1.575446 Supp b'postag:JJ'
-1.641300 Air b'+1:postag:JJ'
-1.665695 Air b'postag:NN'
-1.677781 O b'-1:lemma:IP'
-1.786584 O b'+1:lemma:+'
-1.796122 Anti b'postag:NNP'
-1.854444 O b'lemma:rifampicin'
-1.946910 O b'-1:lemma:nsrr'
-1.979248 O b'lemma:methanol'
-2.077182 O b'-1:lemma:2'
-2.088516 O b'+1:lemma:hour'
-2.183645 O b'+1:lemma:2'
-2.789864 O b'+1:lemma:1'
-3.511399 O b'-1:lemma::'
-3.697135 O b'-1:lemma:_'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.34336652460986966, 'c2': 0.023606219975479584}
best CV score:0.8168890593472544
model size: 0.09M
Flat F1: 0.8128223676488701
precision recall f1-score support
OD 0.652 0.405 0.500 37
pH 1.000 1.000 1.000 12
Technique 0.917 1.000 0.957 22
Med 1.000 0.860 0.925 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.789 0.882 19
Air 0.793 0.742 0.767 62
Anti 0.900 1.000 0.947 9
Strain 1.000 1.000 1.000 1
Gtype 0.933 0.783 0.851 106
Substrain 0.000 0.000 0.000 1
Supp 0.887 0.691 0.777 136
Gversion 0.000 0.000 0.000 0
avg / total 0.885 0.758 0.813 480
Top likely transitions:
OD -> OD 6.265824
Agit -> Agit 5.869478
Temp -> Temp 5.488519
Med -> Med 5.144823
Air -> Air 4.771777
Supp -> Supp 4.593228
Anti -> Anti 4.550151
Gversion -> Gversion 4.348826
Gtype -> Gtype 4.225492
Technique -> Technique 3.988233
O -> O 3.774876
Phase -> Phase 3.702756
Gtype -> Supp 1.903024
pH -> pH 1.848213
O -> Supp 1.594685
O -> Technique 0.980723
Air -> O 0.980311
O -> Gtype 0.683784
Med -> O 0.581107
Substrain -> Gtype 0.524869
Technique -> Air 0.483765
OD -> Phase 0.447540
Supp -> O 0.422763
Temp -> O 0.383324
Gtype -> pH 0.198547
O -> Anti 0.179783
Gtype -> Air 0.052812
O -> Agit -0.004958
Technique -> pH -0.041609
Anti -> O -0.097695
Gtype -> O -0.117083
Technique -> O -0.151878
Phase -> OD -0.322970
O -> Air -0.457974
OD -> O -0.476767
Substrain -> O -0.946090
Med -> Supp -0.949223
Agit -> O -1.116660
Top unlikely transitions:
OD -> OD 6.265824
Agit -> Agit 5.869478
Temp -> Temp 5.488519
Med -> Med 5.144823
Air -> Air 4.771777
Supp -> Supp 4.593228
Anti -> Anti 4.550151
Gversion -> Gversion 4.348826
Gtype -> Gtype 4.225492
Technique -> Technique 3.988233
O -> O 3.774876
Phase -> Phase 3.702756
Gtype -> Supp 1.903024
pH -> pH 1.848213
O -> Supp 1.594685
O -> Technique 0.980723
Air -> O 0.980311
O -> Gtype 0.683784
Med -> O 0.581107
Substrain -> Gtype 0.524869
Technique -> Air 0.483765
OD -> Phase 0.447540
Supp -> O 0.422763
Temp -> O 0.383324
Gtype -> pH 0.198547
O -> Anti 0.179783
Gtype -> Air 0.052812
O -> Agit -0.004958
Technique -> pH -0.041609
Anti -> O -0.097695
Gtype -> O -0.117083
Technique -> O -0.151878
Phase -> OD -0.322970
O -> Air -0.457974
OD -> O -0.476767
Substrain -> O -0.946090
Med -> Supp -0.949223
Agit -> O -1.116660
Top positive:
6.357696 Air b'word:Aerobic'
5.077540 Air b'lemma:anaerobic'
4.552250 Anti b'-2:lemma:antibody'
4.360948 O b'-2:lemma:_'
4.109534 Supp b'lemma:nh4cl'
4.096460 Technique b'word:ChIP-Seq'
3.897866 O b'-2:lemma:flagtag'
3.611278 Gtype b'-2:lemma:genotype/variation'
3.568906 O b'postag:IN'
3.460895 O b'lemma:_'
3.460895 O b'word:_'
3.428391 O b'lemma:1'
3.428391 O b'word:1'
3.423275 Technique b'lemma:rna-seq'
3.314745 Med b'word:LB'
3.281392 Technique b'word:ChIP-exo'
3.278176 O b'-1:lemma:ChIP-exo'
3.237196 O b'lemma:rpob'
3.237196 O b'word:RpoB'
3.225531 Supp b'lemma:nitrate'
3.225531 Supp b'word:nitrate'
3.161794 O b'postag::'
3.139068 Air b'word:Anaerobic'
3.139066 O b'+2:lemma:\xc2\xb0c'
3.077701 Gtype b'lemma:type'
3.077701 Gtype b'word:type'
3.075219 Technique b'word:ChIPSeq'
2.840391 O b'lemma:2'
2.840391 O b'word:2'
2.815117 Gtype b'-2:lemma:delta'
2.722376 O b'lemma:3'
2.722376 O b'word:3'
2.706348 O b'word:Cra'
2.634028 O b'+1:postag:RB'
2.495581 Substrain b'lemma:mg1655'
2.495581 Substrain b'word:MG1655'
2.448736 Med b'+2:lemma:with'
2.443674 Gtype b'-2:lemma:affyexp'
2.381962 O b'lemma:.'
2.381962 O b'postag:.'
2.381962 O b'word:.'
2.367230 Strain b'lemma:k-12'
2.367230 Strain b'word:K-12'
2.361973 Gtype b'lemma:wild-type'
2.355120 Phase b'lemma:mid-log'
2.355120 Phase b'word:mid-log'
2.319375 Gtype b'-2:lemma:genotype'
2.302990 Supp b'lemma:no3'
2.302990 Supp b'word:NO3'
2.291837 Med b'lemma:MOPS'
2.291837 Med b'word:MOPS'
2.228985 Technique b'lemma:ChIP-exo'
2.205076 Supp b'-2:lemma:supplement'
2.202918 Supp b'+1:lemma:\xc2\xb5m'
2.202918 Supp b'+1:word:\xc2\xb5M'
2.172606 Gtype b'+1:lemma:type'
2.172606 Gtype b'+1:word:type'
2.164705 Gtype b'+2:lemma:glucose'
2.129804 Gtype b'-1:lemma:\xe2\x88\x86'
2.129804 Gtype b'-1:word:\xe2\x88\x86'
2.103445 Anti b'+2:lemma:antibody'
2.089681 Air b'postag:RB'
2.074019 Technique b'+2:lemma:ph5'
2.072624 O b'+2:lemma:fructose'
2.067658 OD b'lemma:od600'
2.067658 OD b'word:OD600'
2.038104 Supp b'-2:lemma:shake'
2.013357 Supp b'lemma:Iron'
2.013357 Supp b'word:Iron'
2.013357 Supp b'+1:word:Deficient'
2.013357 Supp b'-2:lemma:Anaerobic'
1.980749 O b'+1:word:ChIP-Seq'
1.962748 O b'postag:CC'
1.930693 Supp b'lemma:pq'
1.930693 Supp b'word:PQ'
1.924374 O b'-1:word:Aerobic'
1.923374 O b'word:A'
1.922702 O b'lemma:b'
1.922702 O b'word:B'
1.917919 Supp b'-2:lemma:purr'
1.903045 O b'+1:postag:NNP'
1.888802 O b'+1:postag:VBP'
1.886279 Gtype b'lemma:wt'
1.882619 Phase b'-2:lemma:phase'
1.877260 Phase b'lemma:stationary'
1.877260 Phase b'word:stationary'
1.875788 O b'-2:lemma:~'
1.867119 O b'postag:DT'
1.857025 Technique b'lemma:chipseq'
1.833096 O b'postag:VBN'
1.829071 Gversion b'-2:lemma:nc'
1.818881 Gtype b'word:WT'
1.787639 O b'lemma:culture'
1.786961 O b'-1:lemma:tag'
1.786604 Gtype b'postag:-RRB-'
1.737297 Supp b'-1:word:Cra'
1.734300 O b'-2:lemma:mg/ml'
1.722597 O b'-2:lemma:medium'
1.711409 Technique b'lemma:rnaseq'
1.711409 Technique b'word:RNASeq'
1.696030 O b'lemma:chip'
1.694223 O b'lemma:-'
1.694223 O b'word:-'
1.694171 Supp b'-2:lemma:for'
1.691174 O b'lemma:Custom'
1.691174 O b'word:Custom'
1.681320 O b'word:Lrp'
1.673790 Gtype b'postag:JJ'
1.647891 O b'isLower'
1.643397 Gtype b'lemma:nsrr'
1.643397 Gtype b'word:NsrR'
1.632308 Supp b'lemma:arginine'
1.604616 O b'lemma:a'
1.600294 Gtype b'lemma:\xce\xb4cra'
1.596463 Gtype b'word:\xce\x94cra'
1.580527 Med b'+2:lemma:b2'
1.575286 O b'-1:lemma:lb'
1.556401 Temp b'-1:word:sample'
1.544845 O b'+2:lemma:polyclonal'
1.543849 Med b'isUpper'
1.541896 Supp b'+2:lemma:rifampicin'
1.535125 Supp b'lemma:glucose'
1.535125 Supp b'word:glucose'
1.524619 pH b'+1:postag:CD'
1.521913 Supp b'-1:postag:CC'
1.517190 O b'+2:lemma:chipseq'
1.503740 Supp b'-2:lemma:Lrp'
1.457179 O b'-2:lemma:co2'
1.447917 O b'-1:lemma:anaerobic'
1.447594 Temp b'-1:lemma:sample'
1.439709 Gtype b'lemma:\xe2\x88\x86'
1.439709 Gtype b'word:\xe2\x88\x86'
1.437966 Temp b'isNumber'
1.431128 Supp b'lemma:acetate'
1.431128 Supp b'word:acetate'
1.427889 Supp b'+1:lemma:2'
1.427889 Supp b'+1:word:2'
1.392397 Gversion b'lemma:nc'
1.392397 Gversion b'word:NC'
1.390556 pH b'lemma:ph5'
1.390556 pH b'+1:lemma:.5'
1.390556 pH b'word:pH5'
1.390556 pH b'+1:word:.5'
1.384470 Supp b'lemma:iptg'
1.384470 Supp b'word:IPTG'
1.365812 O b'-2:lemma:\xe2\x88\x86'
1.364153 Air b'+2:postag:NNP'
1.333446 Gtype b'+1:lemma:with'
1.333446 Gtype b'+1:word:with'
1.324361 Gtype b'-2:postag::'
1.306165 O b'+2:postag:JJ'
1.289867 Gtype b'-2:postag:DT'
1.281577 Gversion b'lemma:chip-seq'
1.270110 Gversion b'+2:lemma:000913'
1.267124 Vess b'lemma:flask'
1.267124 Vess b'-1:lemma:warm'
1.267124 Vess b'word:flask'
1.267124 Vess b'-1:word:warmed'
1.267124 Vess b'-2:lemma:pre'
1.267124 Vess b'+2:lemma:43'
1.263332 O b'+1:postag::'
1.249814 O b'isNumber'
1.246752 Air b'-2:postag:CD'
1.242966 Supp b'+1:lemma:1'
1.242966 Supp b'+1:word:1'
1.216506 Supp b'lemma:fructose'
1.216506 Supp b'word:fructose'
1.209634 Med b'lemma:media'
1.209634 Med b'word:media'
1.202005 O b'-1:lemma:media'
1.202005 O b'-1:word:media'
1.199774 Med b'+2:lemma:medium'
1.187094 Gtype b'-1:lemma:rpob'
1.187094 Gtype b'-1:word:RpoB'
1.183792 Supp b'lemma:dpd'
1.183792 Supp b'word:DPD'
1.180639 Air b'+2:lemma:37'
1.176560 Anti b'+1:lemma:antibody'
1.176560 Anti b'+1:word:antibody'
1.169611 O b'-1:word:tag'
1.165769 Gtype b'lemma:flag-tag'
1.165769 Gtype b'-1:lemma:c-terminal'
1.165769 Gtype b'word:Flag-tag'
1.165769 Gtype b'-1:word:C-terminal'
1.164325 Agit b'-2:postag:IN'
1.148652 O b'-2:lemma:mid-log'
1.147844 Gtype b'postag:NN'
1.145961 Phase b'isLower'
1.133253 O b'-2:lemma:ChIP-Seq'
1.129704 Temp b'-2:lemma:\xcf\x8332'
1.125804 Med b'+1:lemma:0.4'
1.125804 Med b'+1:word:0.4'
1.122954 Temp b'isUpper'
1.117074 Temp b'lemma:43'
1.117074 Temp b'word:43'
1.113876 Med b'+1:postag:JJ'
1.094450 Air b'-1:lemma:ChIP-Seq'
1.094450 Air b'-1:word:ChIP-Seq'
1.088461 Air b'-2:lemma:IP'
1.083576 Supp b'+1:lemma:_'
Top negative:
-0.031330 O b'-1:word:~'
-0.033235 Air b'+2:lemma:and'
-0.033826 Air b'-2:lemma:n2'
-0.033868 Temp b'+1:lemma:to'
-0.033868 Temp b'+1:postag:TO'
-0.033868 Temp b'+1:word:to'
-0.034239 O b'-2:lemma:-lrb-'
-0.034758 OD b'+2:postag:CD'
-0.034948 O b'+2:lemma:reference'
-0.046088 Air b'-1:postag:RB'
-0.047770 Temp b'+2:lemma:to'
-0.047770 Temp b'+2:postag:TO'
-0.048579 O b'-1:lemma:rpob'
-0.048579 O b'-1:word:RpoB'
-0.051599 Supp b'+1:lemma:-rrb-'
-0.051599 Supp b'+1:word:-RRB-'
-0.055182 O b'+2:lemma:anaerobically'
-0.055535 Air b'-1:lemma:,'
-0.055535 Air b'-1:postag:,'
-0.055535 Air b'-1:word:,'
-0.056326 OD b'+1:postag:CD'
-0.059220 O b'+1:word:cells'
-0.061552 O b'+1:word:ChIP-exo'
-0.064402 O b'lemma:fecl2'
-0.064402 O b'word:FeCl2'
-0.066340 Supp b'+1:postag:-RRB-'
-0.068654 Air b'-2:postag:CC'
-0.073218 Temp b'isLower'
-0.075683 O b'-2:lemma:%'
-0.080063 Supp b'postag:CC'
-0.081265 O b'-1:lemma:the'
-0.081974 Air b'postag:CD'
-0.082604 O b'-2:lemma:anaerobically'
-0.084445 Gtype b'-2:postag:IN'
-0.085948 O b'lemma:grow'
-0.086016 O b'lemma:20'
-0.086016 O b'word:20'
-0.087663 OD b'+2:postag:-LRB-'
-0.088450 pH b'postag:NN'
-0.089437 O b'-1:word:the'
-0.090217 O b'+1:lemma:mg1655'
-0.090217 O b'+1:word:MG1655'
-0.090497 O b'+1:lemma:300'
-0.090497 O b'+1:word:300'
-0.091900 O b'+1:lemma:fecl2'
-0.091900 O b'+1:word:FeCl2'
-0.091900 O b'-2:lemma:0.1'
-0.095208 Air b'+2:postag:IN'
-0.097435 O b'+1:postag:-RRB-'
-0.102615 Gtype b'+2:lemma:,'
-0.102615 Gtype b'+2:postag:,'
-0.104429 O b'-1:lemma:iptg'
-0.104429 O b'-1:word:IPTG'
-0.104998 O b'+1:lemma:.'
-0.104998 O b'+1:postag:.'
-0.104998 O b'+1:word:.'
-0.107677 O b'lemma:k-12'
-0.107677 O b'word:K-12'
-0.113262 O b'-2:lemma:cell'
-0.116418 Supp b'-2:postag:IN'
-0.122812 O b'+2:lemma:-rrb-'
-0.124242 Supp b'-1:postag:NNP'
-0.126377 Anti b'+1:lemma:anti-fur'
-0.126377 Anti b'+1:word:anti-Fur'
-0.154570 O b'-1:postag:-LRB-'
-0.156192 O b'-2:postag:VBG'
-0.158047 O b'-2:postag:-LRB-'
-0.163530 Phase b'-2:postag:NN'
-0.165038 O b'-1:postag:VBN'
-0.172203 O b'-2:lemma:to'
-0.172203 O b'-2:postag:TO'
-0.175281 O b'+2:lemma:b'
-0.177331 O b'-2:lemma::'
-0.178997 O b'-1:lemma:37'
-0.178997 O b'-1:word:37'
-0.180982 Supp b'isUpper'
-0.196878 O b'lemma:dissolve'
-0.196878 O b'word:dissolved'
-0.196878 O b'+2:lemma:methanol'
-0.207471 Gtype b'-1:postag:NN'
-0.209158 Air b'isLower'
-0.211564 O b'+2:lemma:mg1655'
-0.216055 O b'+1:lemma:phase'
-0.216055 O b'+1:word:phase'
-0.218804 Anti b'+2:lemma:polyclonal'
-0.225020 Temp b'-2:postag:NN'
-0.226672 O b'+1:lemma:g/l'
-0.226672 O b'+1:word:g/L'
-0.236399 O b'-2:lemma:minimal'
-0.242119 Technique b'isNumber'
-0.243045 Air b'+1:postag:JJ'
-0.244256 Supp b'-2:postag:NN'
-0.247335 O b'lemma:2h'
-0.247335 O b'-1:lemma:additional'
-0.247335 O b'word:2h'
-0.247335 O b'-1:word:additional'
-0.249741 Air b'-1:postag:JJ'
-0.253398 O b'+1:word:hours'
-0.261331 O b'-2:lemma:50'
-0.267379 O b'+1:lemma:supplement'
-0.267379 O b'+1:word:supplemented'
-0.268909 O b'word:WT'
-0.273891 O b'+2:postag:RB'
-0.274312 O b'lemma:anaerobically'
-0.274312 O b'word:anaerobically'
-0.295438 Phase b'isUpper'
-0.297401 O b'+2:lemma:+'
-0.299315 O b'-1:lemma:co2'
-0.299315 O b'-1:word:CO2'
-0.310768 O b'-1:lemma:IP'
-0.310768 O b'-1:word:IP'
-0.319418 Anti b'+2:postag:JJ'
-0.325955 Supp b'+2:lemma:-rrb-'
-0.334787 Med b'+1:postag:NN'
-0.341329 O b'lemma:37'
-0.341329 O b'word:37'
-0.342615 O b'-1:lemma:dissolve'
-0.342615 O b'+1:lemma:methanol'
-0.342615 O b'-1:word:dissolved'
-0.342615 O b'+1:word:methanol'
-0.346343 O b'+1:postag:NNS'
-0.346399 Agit b'isUpper'
-0.361710 O b'lemma:methanol'
-0.361710 O b'word:methanol'
-0.361710 O b'-2:lemma:dissolve'
-0.365689 O b'+2:postag:-RRB-'
-0.371703 O b'lemma:media'
-0.371703 O b'word:media'
-0.375913 Med b'+1:postag:IN'
-0.375941 O b'-2:lemma:supplement'
-0.389209 O b'-1:lemma:nsrr'
-0.389209 O b'-1:word:NsrR'
-0.391437 Phase b'postag:JJ'
-0.407412 O b'-2:lemma:IP'
-0.420031 Supp b'+2:postag:NNS'
-0.428280 O b'lemma:glucose'
-0.428280 O b'word:glucose'
-0.431094 O b'-2:postag:RB'
-0.438906 Supp b'+2:postag:-RRB-'
-0.441532 O b'lemma:wt'
-0.462990 OD b'lemma:-lrb-'
-0.462990 OD b'word:-LRB-'
-0.468593 O b'-2:lemma:a'
-0.475940 O b'+1:postag:VBG'
-0.483738 Gtype b'isUpper'
-0.485302 OD b'-2:postag:JJ'
-0.500326 O b'+2:lemma:medium'
-0.515103 O b'-2:postag:DT'
-0.547995 O b'+1:lemma:in'
-0.547995 O b'+1:word:in'
-0.556608 O b'lemma:rifampicin'
-0.556608 O b'word:rifampicin'
-0.582146 OD b'isNumber'
-0.583100 O b'-1:postag:IN'
-0.592764 O b'lemma:phase'
-0.592764 O b'word:phase'
-0.595239 O b'lemma:mid-log'
-0.595239 O b'word:mid-log'
-0.605400 O b'lemma:of'
-0.605400 O b'word:of'
-0.607669 O b'-1:lemma:grow'
-0.614149 Temp b'postag:NN'
-0.632028 Supp b'+2:lemma:2'
-0.641055 Supp b'-2:postag:JJ'
-0.646532 OD b'+1:postag:NN'
-0.649552 O b'-1:lemma:sample'
-0.673065 O b'-2:lemma:rpob'
-0.685360 Supp b'+2:postag:NN'
-0.718536 Gversion b'isLower'
-0.726489 O b'+2:lemma:rifampicin'
-0.728168 Med b'-2:postag:VBN'
-0.728191 O b'-1:postag::'
-0.732227 O b'-1:lemma:2'
-0.732227 O b'-1:word:2'
-0.751907 Technique b'isLower'
-0.756257 O b'+1:postag:IN'
-0.788494 O b'postag:RB'
-0.793328 O b'+1:lemma:at'
-0.793328 O b'+1:word:at'
-0.803395 Med b'-1:postag:NN'
-0.840583 O b'-1:postag:VBG'
-0.849074 O b'word:cells'
-0.860641 O b'+2:lemma:mid-log'
-0.885639 Gtype b'isLower'
-0.907497 OD b'postag:-LRB-'
-0.937466 O b'-2:lemma:rifampicin'
-0.975829 Gtype b'isNumber'
-1.088007 O b'-2:lemma:phase'
-1.095557 Air b'postag:NN'
-1.113735 O b'+1:lemma:2'
-1.113735 O b'+1:word:2'
-1.264849 Anti b'postag:NNP'
-1.412293 O b'+1:lemma:1'
-1.412293 O b'+1:word:1'
-1.493591 Supp b'postag:JJ'
-1.991234 O b'-1:lemma::'
-1.991234 O b'-1:word::'
-2.151194 Supp b'+2:postag:CD'
-2.386492 O b'-1:lemma:_'
-2.386492 O b'-1:word:_'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.18334620784152844, 'c2': 0.008065728975440238}
best CV score:0.7992328667891142
model size: 0.06M
Flat F1: 0.7861345162985679
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.800 0.842 0.821 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.939 0.742 0.829 62
Anti 0.571 0.444 0.500 9
Strain 1.000 1.000 1.000 1
Gtype 0.866 0.792 0.828 106
Substrain 0.000 0.000 0.000 1
Supp 0.802 0.654 0.721 136
Gversion 0.000 0.000 0.000 0
avg / total 0.863 0.738 0.786 480
Top likely transitions:
Agit -> Agit 6.441317
OD -> OD 6.198142
Temp -> Temp 5.464759
Anti -> Anti 5.428002
Med -> Med 5.387458
Air -> Air 5.209961
Phase -> Phase 4.695053
O -> O 4.548631
Gversion -> Gversion 4.547965
Gtype -> Gtype 4.475060
Supp -> Supp 4.114913
Technique -> Technique 4.082736
pH -> pH 1.944903
O -> Supp 1.807640
Air -> O 1.622322
Gtype -> Supp 1.534817
Substrain -> Gtype 1.344174
O -> Technique 1.336522
O -> Gtype 1.245629
O -> Anti 0.936139
Technique -> Air 0.714948
O -> Temp 0.637848
Med -> O 0.459165
O -> Gversion 0.360936
Temp -> O 0.204109
OD -> Phase 0.159046
O -> Med 0.104640
Supp -> O 0.075713
Phase -> O 0.056846
Gtype -> pH 0.037916
O -> Strain 0.016408
O -> OD -0.000411
Technique -> O -0.074489
OD -> Air -0.121140
Technique -> Gtype -0.135273
Gtype -> Med -0.165067
Supp -> Air -0.232833
Technique -> OD -0.233483
Gtype -> O -0.424837
Gtype -> Anti -0.430777
OD -> O -0.542516
Supp -> Med -0.717785
O -> Air -0.775058
Agit -> O -0.784243
Gtype -> OD -0.845217
Substrain -> O -1.160866
Med -> Supp -1.461608
Phase -> OD -1.657661
Top unlikely transitions:
Agit -> Agit 6.441317
OD -> OD 6.198142
Temp -> Temp 5.464759
Anti -> Anti 5.428002
Med -> Med 5.387458
Air -> Air 5.209961
Phase -> Phase 4.695053
O -> O 4.548631
Gversion -> Gversion 4.547965
Gtype -> Gtype 4.475060
Supp -> Supp 4.114913
Technique -> Technique 4.082736
pH -> pH 1.944903
O -> Supp 1.807640
Air -> O 1.622322
Gtype -> Supp 1.534817
Substrain -> Gtype 1.344174
O -> Technique 1.336522
O -> Gtype 1.245629
O -> Anti 0.936139
Technique -> Air 0.714948
O -> Temp 0.637848
Med -> O 0.459165
O -> Gversion 0.360936
Temp -> O 0.204109
OD -> Phase 0.159046
O -> Med 0.104640
Supp -> O 0.075713
Phase -> O 0.056846
Gtype -> pH 0.037916
O -> Strain 0.016408
O -> OD -0.000411
Technique -> O -0.074489
OD -> Air -0.121140
Technique -> Gtype -0.135273
Gtype -> Med -0.165067
Supp -> Air -0.232833
Technique -> OD -0.233483
Gtype -> O -0.424837
Gtype -> Anti -0.430777
OD -> O -0.542516
Supp -> Med -0.717785
O -> Air -0.775058
Agit -> O -0.784243
Gtype -> OD -0.845217
Substrain -> O -1.160866
Med -> Supp -1.461608
Phase -> OD -1.657661
Top positive:
8.540612 Supp b'lemma:Iron'
8.329515 O b'lemma:_'
7.954212 Air b'lemma:anaerobic'
7.558303 Air b'lemma:aerobic'
7.425659 Supp b'lemma:nitrate'
7.188063 O b'lemma:1'
7.151953 Technique b'lemma:ChIP-exo'
6.868721 Phase b'lemma:stationary'
6.736734 Strain b'lemma:k-12'
6.164335 O b'lemma:rpob'
6.164166 Air b'-1:lemma:ChIP-Seq'
6.145220 Phase b'lemma:mid-log'
6.083537 O b'lemma:2'
6.046633 Technique b'lemma:chipseq'
5.843991 Substrain b'lemma:mg1655'
5.625605 Gversion b'lemma:asm584v2'
5.595675 Supp b'lemma:pq'
5.579787 O b'lemma:3'
5.528331 Gtype b'lemma:type'
5.458452 O b'-1:lemma:ChIP-exo'
5.389356 Med b'lemma:MOPS'
5.261442 O b'-1:lemma:tag'
5.221290 Gtype b'lemma:\xce\xb4cra'
5.207575 O b'lemma:\xcf\x8332'
5.185393 OD b'lemma:od600'
5.129342 O b'lemma:Custom'
5.077322 O b'lemma:rep1'
5.062790 Air b'lemma:Aerobic'
5.039230 Gtype b'lemma:flag-tag'
5.039230 Gtype b'-1:lemma:c-terminal'
4.960492 O b'lemma:b'
4.944484 Med b'lemma:LB'
4.895657 O b'lemma:rep2'
4.895123 Gversion b'lemma:nc'
4.892927 O b'postag:IN'
4.878845 Supp b'+1:lemma:\xc2\xb5m'
4.777473 Supp b'lemma:nh4cl'
4.733229 O b'lemma:rep3'
4.700693 Technique b'lemma:ChIP-Seq'
4.522919 Gtype b'-1:lemma:\xe2\x88\x86'
4.506447 O b'lemma:a'
4.486239 Gtype b'lemma:delta-arca'
4.484173 Gtype b'+1:lemma:type'
4.469270 Temp b'-1:lemma:sample'
4.466501 Gtype b'lemma:arca8myc'
4.444728 O b'lemma:Cra'
4.370578 Supp b'lemma:glucose'
4.315203 Technique b'lemma:rna-seq'
4.281493 O b'postag::'
4.229592 Gtype b'lemma:wt'
4.150659 Supp b'lemma:Fe'
4.147004 OD b'lemma:od450'
4.134772 O b'-1:lemma:Aerobic'
4.128050 Gtype b'lemma:fnr8myc'
4.061029 Med b'lemma:lb'
3.983457 Gversion b'-1:lemma:nc'
3.979082 Anti b'lemma:none'
3.866545 Gtype b'lemma:delta-fnr'
3.851958 Supp b'lemma:acetate'
3.765754 Supp b'lemma:dpd'
3.751043 Gtype b'lemma:\xe2\x88\x86'
3.745952 Technique b'lemma:chip-seq'
3.717926 Supp b'lemma:no3'
3.687851 Supp b'lemma:arginine'
3.686242 Anti b'lemma:seqa'
3.685360 O b'lemma:.'
3.685360 O b'postag:.'
3.654301 O b'+1:lemma:od600'
3.652925 Technique b'lemma:rnaseq'
3.626342 Gtype b'lemma:\xce\xb4fur'
3.609455 Gtype b'lemma:nsrr'
3.595076 O b'-1:lemma:0.3-0.35'
3.582662 O b'lemma:-'
3.473034 Supp b'lemma:rifampicin'
3.422494 Gtype b'lemma:wild-type'
3.383395 Supp b'lemma:fructose'
3.373092 O b'+1:postag:RB'
3.370884 Vess b'lemma:flask'
3.370884 Vess b'-1:lemma:warm'
3.350883 Med b'+1:lemma:0.4'
3.305547 O b'-1:lemma:type'
3.282833 Anti b'+1:lemma:antibody'
3.274554 O b'lemma:CEL'
3.202139 Gtype b'lemma:\xce\xb4ompr'
3.201589 pH b'lemma:ph5'
3.201589 pH b'+1:lemma:.5'
3.179454 OD b'+1:lemma:stationary'
3.176547 Strain b'+1:lemma:substr'
3.170822 O b'-1:lemma:glucose'
3.142788 Technique b'+1:lemma:chip-exo'
3.131035 Med b'lemma:m63'
3.104780 Gversion b'lemma:chip-seq'
3.102061 O b'lemma:chip'
3.089303 Med b'+1:lemma:minimal'
3.068476 O b'-1:lemma:0.3'
3.053453 O b'-1:lemma:anaerobic'
2.941730 Gtype b'+1:lemma:with'
2.941090 Temp b'-1:lemma:\xcf\x8332'
2.924228 O b'lemma:or'
2.920487 Gversion b'lemma:u00096'
2.920487 Gversion b'+1:lemma:.2'
2.919801 Anti b'lemma:anti-myc'
2.909988 Gtype b'+1:lemma:pq'
2.906926 O b'postag:VBN'
2.903384 Air b'lemma:anaerobically'
2.892016 Technique b'-1:lemma:IP'
2.855009 Temp b'-1:lemma:37'
2.841195 Gtype b'-1:lemma:ptac'
2.840168 Gtype b'+1:lemma:ph5'
2.824282 O b'lemma:with'
2.811989 Supp b'-1:lemma:Cra'
2.803863 Supp b'+1:lemma:1'
2.775638 Gtype b'-1:lemma:rpob'
2.742550 Gversion b'lemma:.2'
2.742550 Gversion b'-1:lemma:u00096'
2.725585 Supp b'lemma:nacl'
2.718890 O b'postag:CC'
2.663906 Med b'lemma:media'
2.648781 Supp b'+1:lemma:2'
2.634231 O b'+1:postag:NNP'
2.619387 Anti b'lemma:anti-rpos'
2.617733 Med b'-1:lemma:ml'
2.607952 O b'lemma:s'
2.604146 Med b'+1:lemma:2.0'
2.596931 Supp b'lemma:iptg'
2.582684 O b'lemma:oxyr'
2.582365 Supp b'-1:lemma:+'
2.553826 Technique b'-1:lemma:chip-exo'
2.553515 Temp b'-1:lemma:43'
2.539094 Gtype b'lemma:pk4854'
2.536990 Gversion b'lemma:000913'
2.536605 O b'postag:DT'
2.518305 O b'+1:lemma:chip-seq'
2.477235 Supp b'-1:lemma:\xc2\xb5m'
2.471748 Gtype b'+1:lemma:flagtag'
2.466305 O b'+1:lemma:pq'
2.452553 Supp b'+1:lemma:_'
2.440883 O b'-1:lemma:lb'
2.436674 Gtype b'lemma:\xce\xb4soxs'
2.430228 pH b'lemma:.5'
2.430228 pH b'-1:lemma:ph5'
2.426250 O b'-1:lemma:l1'
2.384757 Temp b'lemma:43'
2.377779 O b'lemma:for'
2.359688 Temp b'lemma:\xc2\xb0c'
2.350893 O b'postag:VBG'
2.345463 Supp b'lemma:Leu'
2.342569 Gtype b'lemma:ptac'
2.329995 Med b'lemma:L'
2.329995 Med b'+1:lemma:broth'
2.326782 Air b'postag:RB'
2.308974 O b'lemma:Lrp'
2.261997 O b'-1:lemma:stpa'
2.261829 O b'lemma:affyexp'
2.235812 OD b'-1:lemma:~'
2.218246 Med b'lemma:glucose'
2.195328 Gtype b'lemma:deltaseqa'
2.195328 Gtype b'-1:lemma:old'
2.183473 Air b'-1:lemma:-'
2.179368 O b'+1:lemma:sparging'
2.167113 O b'lemma:ompr'
2.162481 Gtype b'-1:lemma:nsrr'
2.144923 O b'lemma:chip-arca'
2.136602 Phase b'+1:lemma:for'
2.135598 Supp b'+1:lemma:hour'
2.135317 Med b'+1:lemma:supplement'
2.126541 Gtype b'+1:lemma:_'
2.123397 O b'-1:lemma:media'
2.105149 O b'+1:lemma:o.d.'
2.089279 Phase b'-1:lemma:until'
2.080166 Supp b'lemma:20'
2.074063 O b'lemma:Fur'
2.064834 Technique b'-1:lemma:input'
2.043986 Gtype b'-1:lemma:phtpg'
2.037910 Supp b'+1:lemma:Deficient'
2.037801 Supp b'-1:lemma:with'
2.030413 Med b'+1:lemma:g/l'
2.023253 O b'-1:lemma:\xc2\xb0c'
2.015889 O b'lemma:culture'
2.012914 Supp b'lemma:Adenine'
1.961151 O b'lemma:condition'
1.959484 OD b'lemma:0.3'
1.954444 O b'lemma:at'
1.926198 Gtype b'lemma:WT'
1.917991 Med b'+1:lemma:+'
1.914469 Technique b'+1:lemma:rna-seq'
1.908781 O b'+1:lemma:mid-log'
1.905871 Supp b'+1:lemma:and'
1.900742 Med b'-1:lemma:glucose'
1.887953 O b'lemma:soxs'
1.887953 O b'lemma:soxr'
1.887594 OD b'+1:lemma:phase'
1.885281 O b'lemma:purr'
1.881926 O b'lemma:argr'
1.870206 Supp b'lemma:methanol'
1.855988 Air b'lemma:Anaerobic'
1.848701 Temp b'lemma:37'
1.821308 OD b'-1:lemma:about'
1.790114 Vess b'-1:postag:VBN'
1.778495 Substrain b'+1:lemma:phtpg'
Top negative:
0.008475 O b'+1:lemma:source'
0.008182 Supp b'-1:postag:VBN'
0.007577 OD b'lemma:0.3-0.35'
0.006822 O b'-1:lemma:escherichia'
0.006285 Gtype b'+1:lemma:ryhb'
0.006132 O b'lemma:250'
0.006049 Gtype b'lemma:-rcb-'
0.005285 Supp b'-1:postag:NN'
0.004330 Air b'-1:postag:RB'
0.003915 O b'-1:lemma:total'
0.003749 O b'+1:lemma:total'
0.003385 OD b'-1:lemma:coli'
0.003150 Med b'+1:lemma:,'
0.003150 Med b'+1:postag:,'
0.002999 Supp b'-1:lemma:1g/l'
0.002933 Air b'-1:lemma:,'
0.002933 Air b'-1:postag:,'
0.002755 Gtype b'+1:postag:CD'
0.002753 O b'lemma:fructose'
0.002509 O b'lemma:fresh'
0.002233 O b'-1:lemma:no3'
0.001827 O b'-1:lemma:95'
0.001712 Gtype b'+1:lemma:chip'
0.001566 Phase b'+1:postag:RB'
0.001444 O b'-1:lemma:l2'
0.001388 O b'-1:postag:DT'
0.001213 Phase b'-1:postag:IN'
0.001197 Phase b'+1:lemma:aerobically'
0.000889 O b'lemma:contain'
0.000863 Gversion b'-1:postag::'
0.000854 Temp b'-1:postag:NN'
0.000693 O b'lemma:total'
0.000497 Gtype b'lemma:input'
0.000476 O b'+1:lemma:wash'
0.000274 Agit b'+1:postag:NN'
0.000249 Temp b'-1:postag:NNS'
0.000240 O b'lemma:minute'
0.000192 O b'lemma:w0002'
0.000188 Supp b'+1:postag:JJ'
0.000170 O b'lemma:95'
0.000154 O b'-1:postag:VBD'
0.000117 Gtype b'postag::'
0.000115 O b'+1:lemma:for'
0.000056 O b'-1:lemma:Fur'
0.000047 Air b'+1:postag::'
0.000047 O b'-1:lemma:in'
0.000045 O b'lemma:hour'
0.000020 O b'-1:lemma:be'
0.000020 Supp b'+1:lemma:respiratory'
0.000003 O b'+1:lemma:ChIP-Seq'
0.000000 Phase b'-1:lemma:to'
0.000000 Phase b'-1:postag:TO'
-0.000012 O b'+1:lemma:phase'
-0.000031 O b'lemma:\xc2\xb0c'
-0.000095 O b'+1:lemma:c'
-0.000192 OD b'-1:lemma:a'
-0.000224 OD b'+1:lemma:0.4'
-0.000561 OD b'-1:postag:DT'
-0.000675 O b'lemma:anaerobic'
-0.001077 Gtype b'+1:lemma:2'
-0.001543 Supp b'lemma:and'
-0.001755 Air b'-1:lemma:aerobically'
-0.002433 O b'+1:lemma:aerobically'
-0.002622 OD b'+1:postag:-LRB-'
-0.003351 O b'lemma:o2'
-0.003461 Supp b'lemma:mm'
-0.003669 Med b'+1:postag:IN'
-0.003709 OD b'postag:IN'
-0.003711 O b'-1:lemma:mm'
-0.004712 O b'-1:postag:-RRB-'
-0.005352 Supp b'+1:lemma:-rrb-'
-0.005698 Supp b'+1:postag:-RRB-'
-0.006752 O b'+1:lemma:grow'
-0.010187 Air b'-1:lemma:and'
-0.010327 Med b'postag:JJ'
-0.011310 O b'-1:postag:VBN'
-0.014869 Gtype b'-1:postag:NNP'
-0.017264 O b'+1:lemma:rep1'
-0.019988 O b'-1:lemma:1'
-0.020468 Air b'postag:CC'
-0.024010 O b'-1:lemma:,'
-0.024010 O b'-1:postag:,'
-0.032490 Air b'+1:postag:-LRB-'
-0.038677 Air b'+1:lemma:-lrb-'
-0.042409 Gtype b'-1:postag:NN'
-0.045287 O b'+1:lemma:0.4'
-0.048558 OD b'postag:JJ'
-0.052074 O b'-1:lemma:e.'
-0.054143 O b'+1:lemma:or'
-0.055074 O b'+1:lemma:\xc2\xb0c'
-0.057686 Gtype b'-1:postag:CD'
-0.059261 O b'lemma:grow'
-0.064670 Air b'-1:postag:CC'
-0.085677 Phase b'-1:postag:NN'
-0.088185 O b'+1:lemma:300'
-0.091727 O b'-1:lemma:o2'
-0.094970 O b'lemma:n2'
-0.095466 O b'-1:lemma:0.1'
-0.100732 O b'-1:lemma:30'
-0.104433 O b'+1:lemma:arginine'
-0.107064 O b'+1:lemma:5'
-0.119788 Med b'postag:CD'
-0.121641 O b'+1:lemma:until'
-0.126774 OD b'+1:postag:CD'
-0.129423 Anti b'+1:postag:JJ'
-0.131961 Supp b'+1:postag:VBN'
-0.134047 Supp b'postag:CC'
-0.137677 Gtype b'postag:CD'
-0.149809 O b'-1:lemma:from'
-0.150140 Temp b'postag:JJ'
-0.157105 O b'-1:lemma:-lrb-'
-0.163836 O b'+1:lemma:.'
-0.163836 O b'+1:postag:.'
-0.176704 O b'lemma:co2'
-0.183646 O b'-1:lemma:cra'
-0.186855 Med b'+1:postag:NN'
-0.194451 O b'+1:lemma:-rrb-'
-0.195654 O b'lemma:\xce\xb4fur'
-0.204517 O b'+1:postag:IN'
-0.207835 O b'-1:lemma:the'
-0.220665 O b'-1:lemma:of'
-0.229001 Phase b'+1:postag:NN'
-0.237611 pH b'postag:NN'
-0.240067 O b'-1:postag:IN'
-0.271765 Phase b'-1:lemma:at'
-0.272351 O b'+1:postag:NNS'
-0.288235 O b'-1:lemma:sample'
-0.292134 O b'lemma:lb'
-0.307663 O b'postag:RB'
-0.309475 O b'-1:lemma:ml'
-0.310188 Air b'-1:lemma:or'
-0.311946 O b'+1:lemma:%'
-0.326171 O b'-1:postag:-LRB-'
-0.346740 O b'lemma:dissolve'
-0.377272 Med b'-1:postag:NN'
-0.382593 Temp b'postag:NN'
-0.388931 O b'lemma:od600'
-0.389222 Air b'postag:CD'
-0.434666 O b'-1:lemma:0.2'
-0.436034 Gversion b'+1:postag:NN'
-0.444684 O b'-1:lemma:~'
-0.447800 Phase b'-1:postag:JJ'
-0.479171 O b'-1:lemma:od600'
-0.501180 O b'+1:lemma:0.3'
-0.508699 O b'lemma:20'
-0.510331 O b'lemma:phase'
-0.515267 Supp b'+1:lemma:rifampicin'
-0.563739 O b'-1:lemma:grow'
-0.564966 OD b'+1:postag:NN'
-0.590510 O b'lemma:anaerobically'
-0.599810 O b'-1:lemma:rpob'
-0.601743 O b'-1:lemma:37'
-0.610426 O b'+1:postag:-RRB-'
-0.616300 O b'lemma:0.3'
-0.638052 O b'-1:postag::'
-0.643137 Phase b'postag:JJ'
-0.663649 Air b'-1:postag:JJ'
-0.669047 O b'+1:lemma:fecl2'
-0.674359 Technique b'-1:postag::'
-0.688223 O b'lemma:37'
-0.710522 Temp b'+1:lemma:to'
-0.710522 Temp b'+1:postag:TO'
-0.719253 O b'+1:postag:VBG'
-0.763315 OD b'lemma:-lrb-'
-0.811771 O b'+1:lemma:cell'
-0.814345 Supp b'+1:lemma:acetate'
-0.815613 O b'lemma:of'
-0.847971 Supp b'-1:lemma:%'
-0.882271 O b'-1:lemma:co2'
-0.885833 O b'lemma:fecl2'
-0.926916 O b'lemma:0.2'
-0.956430 O b'+1:lemma:g/l'
-0.983784 O b'-1:postag:VBG'
-0.983894 O b'lemma:0.1'
-1.010718 O b'+1:lemma:hour'
-1.016547 OD b'postag:-LRB-'
-1.050740 O b'lemma:mid-log'
-1.054828 O b'-1:lemma:dissolve'
-1.054828 O b'+1:lemma:methanol'
-1.099862 O b'lemma:2h'
-1.099862 O b'-1:lemma:additional'
-1.167797 O b'+1:lemma:+'
-1.232705 Anti b'postag:NNP'
-1.359414 Air b'+1:postag:JJ'
-1.434137 O b'-1:lemma:IP'
-1.480595 O b'-1:lemma:ompr'
-1.489420 O b'+1:lemma:in'
-1.499340 O b'+1:lemma:at'
-1.520824 O b'lemma:wt'
-1.526038 O b'+1:lemma:supplement'
-1.551927 Air b'postag:NN'
-1.631005 O b'-1:lemma:nsrr'
-1.648045 O b'lemma:methanol'
-1.709156 O b'lemma:rifampicin'
-1.751173 Supp b'postag:JJ'
-2.001540 O b'-1:lemma:2'
-2.347334 O b'+1:lemma:2'
-2.780459 O b'+1:lemma:1'
-3.924496 O b'-1:lemma:_'
-4.403653 O b'-1:lemma::'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.15174828379035918, 'c2': 0.004631150546332649}
best CV score:0.8039437168420447
model size: 0.06M
best params:{'c1': 0.04677173929140849, 'c2': 0.02379834069563392}
best CV score:0.7990064924027899
model size: 0.09M
Flat F1: 0.7844164550442063
Flat F1: 0.7946783128458758
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.800 0.842 0.821 57
Med 0.897 0.912 0.904 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.947 0.973 19
Air 0.807 0.742 0.773 62
Anti 0.571 0.444 0.500 9
Air 0.754 0.742 0.748 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.866 0.792 0.828 106
Gtype 0.863 0.774 0.816 106
Substrain 0.000 0.000 0.000 1
Supp 0.807 0.676 0.736 136
Supp 0.865 0.662 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.848 0.746 0.784 480
avg / total 0.877 0.746 0.795 480
Top likely transitions:
Agit -> Agit 6.791682
OD -> OD 6.218349
Med -> Med 5.630081
Temp -> Temp 5.606252
Anti -> Anti 5.592992
Air -> Air 5.496160
Gtype -> Gtype 5.032489
O -> O 4.908086
Phase -> Phase 4.730701
Gversion -> Gversion 4.476840
Technique -> Technique 4.434337
Supp -> Supp 4.084657
pH -> pH 1.968754
Substrain -> Gtype 1.897449
O -> Supp 1.725753
Air -> O 1.650897
O -> Gtype 1.589697
Gtype -> Supp 1.521503
O -> Technique 1.404884
Technique -> Air 0.905351
O -> Temp 0.873962
O -> Anti 0.719006
Med -> O 0.502394
O -> Gversion 0.498028
Temp -> O 0.179242
OD -> Phase 0.164045
O -> Phase 0.156883
Phase -> O 0.137263
Gtype -> Air 0.075321
Gtype -> pH 0.063986
O -> Med 0.051856
O -> Strain 0.030496
Supp -> O 0.016375
Anti -> O 0.009641
O -> OD -0.006635
OD -> Med -0.051166
Technique -> OD -0.093116
Supp -> OD -0.100162
Supp -> Air -0.273856
Gtype -> O -0.276598
Technique -> Gtype -0.372736
Gtype -> Anti -0.373755
Gtype -> Med -0.384161
OD -> O -0.433058
Agit -> O -0.645946
O -> Air -0.659946
Substrain -> O -0.912411
Gtype -> OD -0.984268
Supp -> Med -1.212185
Med -> Supp -1.967819
Agit -> Agit 6.134641
OD -> OD 5.677741
Anti -> Anti 5.362057
Temp -> Temp 5.263270
Med -> Med 5.132754
O -> O 4.728785
Air -> Air 4.725974
Gversion -> Gversion 4.440261
Phase -> Phase 4.387821
Gtype -> Gtype 4.174708
Supp -> Supp 3.913450
Technique -> Technique 3.154023
pH -> pH 2.449543
O -> Supp 1.770580
Gtype -> Supp 1.668161
Substrain -> Gtype 1.640169
Air -> O 1.249366
O -> Gtype 1.164153
O -> Technique 1.104849
O -> Temp 0.933808
Technique -> Air 0.909479
Gtype -> pH 0.842607
O -> Anti 0.645228
Gtype -> Air 0.522992
O -> Strain 0.463558
Med -> O 0.403658
O -> Gversion 0.351834
Phase -> O 0.234348
O -> pH 0.165655
O -> Phase 0.095939
Temp -> O 0.048543
O -> Vess 0.041922
O -> Med 0.035257
OD -> Phase 0.028957
Anti -> O 0.009316
OD -> Anti -0.000732
Phase -> Air -0.015739
Technique -> Gversion -0.018772
Phase -> Med -0.022546
Phase -> Gtype -0.022549
Supp -> Vess -0.030895
Anti -> Med -0.033179
pH -> Supp -0.040764
Supp -> O -0.040968
OD -> Temp -0.042912
O -> OD -0.068011
Gversion -> Gtype -0.074143
Med -> Gtype -0.079772
OD -> Technique -0.093206
Gversion -> Technique -0.100359
Top unlikely transitions:
OD -> OD 6.218349
Med -> Med 5.630081
Temp -> Temp 5.606252
Anti -> Anti 5.592992
Air -> Air 5.496160
Gtype -> Gtype 5.032489
O -> O 4.908086
Phase -> Phase 4.730701
Gversion -> Gversion 4.476840
Technique -> Technique 4.434337
Supp -> Supp 4.084657
pH -> pH 1.968754
Substrain -> Gtype 1.897449
O -> Supp 1.725753
Air -> O 1.650897
O -> Gtype 1.589697
Gtype -> Supp 1.521503
O -> Technique 1.404884
Technique -> Air 0.905351
O -> Temp 0.873962
O -> Anti 0.719006
Med -> O 0.502394
O -> Gversion 0.498028
Temp -> O 0.179242
OD -> Phase 0.164045
O -> Phase 0.156883
Phase -> O 0.137263
Gtype -> Air 0.075321
Gtype -> pH 0.063986
O -> Med 0.051856
O -> Strain 0.030496
Supp -> O 0.016375
Anti -> O 0.009641
O -> OD -0.006635
OD -> Med -0.051166
Technique -> OD -0.093116
Supp -> OD -0.100162
Supp -> Air -0.273856
Gtype -> O -0.276598
Technique -> Gtype -0.372736
Gtype -> Anti -0.373755
Gtype -> Med -0.384161
OD -> O -0.433058
Agit -> O -0.645946
O -> Air -0.659946
Substrain -> O -0.912411
Gtype -> OD -0.984268
Supp -> Med -1.212185
Med -> Supp -1.967819
Phase -> OD -2.190300
OD -> Technique -0.093206
Gversion -> Technique -0.100359
Gversion -> O -0.108780
Gtype -> Temp -0.110250
Gtype -> Phase -0.170695
Gversion -> Supp -0.170820
Anti -> Supp -0.187552
Gtype -> O -0.225882
Air -> Temp -0.230459
Technique -> O -0.233549
Anti -> Gtype -0.271657
Supp -> pH -0.276160
Supp -> Phase -0.284897
Air -> Gtype -0.305208
Gversion -> Air -0.325062
Med -> Air -0.325731
Technique -> Supp -0.334858
Air -> Phase -0.349173
OD -> Supp -0.354028
Gtype -> Technique -0.374277
Supp -> Temp -0.396374
Phase -> Technique -0.429552
Supp -> Anti -0.516081
Air -> Med -0.526139
Anti -> OD -0.539948
Supp -> Gversion -0.628938
Temp -> Med -0.632351
OD -> Med -0.653167
Air -> Supp -0.653757
Gtype -> Gversion -0.690790
Supp -> Gtype -0.708051
OD -> Gtype -0.713878
Gtype -> Med -0.724292
Supp -> OD -0.756035
OD -> Air -0.790987
Supp -> Technique -0.797069
Air -> OD -0.800777
OD -> O -0.818966
Supp -> Air -0.835352
Agit -> O -0.856989
Gtype -> Anti -0.935186
O -> Air -0.982462
Technique -> OD -1.202863
Technique -> pH -1.218760
Gtype -> OD -1.289303
Substrain -> O -1.293089
Supp -> Med -1.346101
Technique -> Gtype -1.361871
Med -> Supp -1.701189
Phase -> OD -2.114354
Top positive:
10.442312 Supp b'lemma:Iron'
9.237513 O b'lemma:_'
8.066306 Phase b'lemma:stationary'
8.024906 Air b'lemma:aerobic'
7.908903 O b'lemma:1'
7.889018 Supp b'lemma:nitrate'
7.674820 Air b'lemma:anaerobic'
7.633175 Technique b'lemma:ChIP-exo'
6.899479 Strain b'lemma:k-12'
6.830547 Med b'lemma:MOPS'
6.657016 O b'lemma:rpob'
6.360670 O b'lemma:2'
6.250166 Gtype b'lemma:type'
6.190584 Substrain b'lemma:mg1655'
6.146067 Air b'-1:lemma:ChIP-Seq'
6.024964 Gversion b'lemma:asm584v2'
5.999859 Technique b'lemma:chipseq'
5.989574 Phase b'lemma:mid-log'
5.930186 Supp b'lemma:pq'
5.914739 O b'lemma:3'
5.824268 O b'lemma:Custom'
5.823157 O b'-1:lemma:tag'
5.790768 O b'-1:lemma:ChIP-exo'
5.787399 Gtype b'lemma:\xce\xb4cra'
5.679226 Air b'lemma:Aerobic'
5.626571 OD b'lemma:od600'
5.547367 Technique b'lemma:ChIP-Seq'
5.529761 O b'lemma:rep2'
5.480516 Med b'lemma:LB'
5.426406 O b'lemma:rep1'
5.393841 Gversion b'lemma:nc'
5.303166 Gtype b'lemma:flag-tag'
5.303166 Gtype b'-1:lemma:c-terminal'
5.281475 Supp b'+1:lemma:\xc2\xb5m'
5.272063 O b'lemma:b'
5.200310 O b'lemma:rep3'
5.142193 OD b'lemma:od450'
5.096163 O b'lemma:\xcf\x8332'
4.990214 O b'lemma:Cra'
4.926222 O b'lemma:a'
4.919918 Gtype b'-1:lemma:\xe2\x88\x86'
4.861544 Supp b'lemma:nh4cl'
4.812167 Gtype b'+1:lemma:type'
4.803668 Gtype b'lemma:wt'
4.778995 Gtype b'lemma:delta-arca'
4.686613 Gtype b'lemma:arca8myc'
4.679240 O b'postag::'
4.678684 O b'postag:IN'
4.626493 OD b'+1:lemma:stationary'
4.555800 Med b'lemma:lb'
4.525977 Gversion b'-1:lemma:nc'
4.514336 Supp b'lemma:glucose'
4.505232 Supp b'lemma:Fe'
4.499806 Gtype b'lemma:fnr8myc'
4.365930 Technique b'lemma:rna-seq'
4.353053 Supp b'lemma:rifampicin'
4.322748 Gtype b'lemma:\xce\xb4fur'
4.244815 Anti b'lemma:none'
4.188590 O b'-1:lemma:Aerobic'
4.181353 Temp b'-1:lemma:sample'
4.061718 Supp b'lemma:dpd'
4.014721 Gtype b'lemma:delta-fnr'
3.991603 Technique b'lemma:rnaseq'
3.988938 O b'lemma:-'
3.968688 O b'-1:lemma:0.3-0.35'
3.942988 Technique b'lemma:chip-seq'
3.894918 Supp b'lemma:acetate'
3.894666 O b'lemma:or'
3.891632 O b'lemma:.'
3.891632 O b'postag:.'
3.833478 Supp b'lemma:arginine'
3.829349 Supp b'lemma:no3'
3.814064 Temp b'-1:lemma:\xcf\x8332'
3.734701 Gtype b'+1:lemma:ph5'
3.730485 Gtype b'lemma:\xce\xb4ompr'
3.716590 Anti b'lemma:seqa'
3.692742 Gtype b'lemma:wild-type'
3.691658 Vess b'lemma:flask'
3.691658 Vess b'-1:lemma:warm'
3.680323 O b'+1:lemma:od600'
3.566813 pH b'lemma:ph5'
3.566813 pH b'+1:lemma:.5'
3.560406 Gtype b'lemma:nsrr'
3.535215 O b'-1:lemma:type'
3.524717 O b'+1:postag:RB'
3.508650 Supp b'lemma:fructose'
3.483038 O b'lemma:chip'
3.461944 Supp b'-1:lemma:Cra'
3.457426 Strain b'+1:lemma:substr'
3.436475 Supp b'+1:lemma:1'
3.379628 Anti b'lemma:anti-myc'
3.377053 Anti b'+1:lemma:antibody'
3.370766 Technique b'-1:lemma:IP'
3.365056 Gtype b'lemma:\xe2\x88\x86'
3.358640 O b'-1:lemma:anaerobic'
3.348760 O b'lemma:CEL'
3.347149 Med b'+1:lemma:0.4'
3.346755 Anti b'lemma:anti-rpos'
3.291412 Gtype b'-1:lemma:ptac'
3.278055 Gversion b'lemma:chip-seq'
3.276131 O b'-1:lemma:0.3'
3.234361 O b'-1:lemma:glucose'
3.215739 O b'lemma:with'
3.173824 Technique b'+1:lemma:chip-exo'
3.151844 Med b'lemma:m63'
3.095334 O b'lemma:2-3'
3.095161 Gversion b'lemma:.2'
3.095161 Gversion b'-1:lemma:u00096'
3.091572 O b'postag:VBN'
3.064702 Gversion b'lemma:u00096'
3.064702 Gversion b'+1:lemma:.2'
3.050277 Temp b'-1:lemma:37'
3.030666 Gtype b'+1:lemma:with'
3.027065 Supp b'+1:lemma:hour'
3.014173 O b'+1:lemma:chip-seq'
3.004960 Gtype b'+1:lemma:flagtag'
2.985168 O b'lemma:for'
2.975989 Supp b'-1:lemma:+'
2.944441 O b'lemma:oxyr'
2.938101 Gtype b'-1:lemma:phtpg'
2.932689 Gtype b'-1:lemma:rpob'
2.920019 Gtype b'+1:lemma:pq'
2.881207 Supp b'lemma:nacl'
2.860299 O b'lemma:s'
2.845172 Supp b'+1:lemma:2'
2.832035 pH b'lemma:.5'
2.832035 pH b'-1:lemma:ph5'
2.826929 Supp b'lemma:Leu'
2.812269 O b'+1:postag:NNP'
2.781059 Air b'lemma:anaerobically'
2.778609 O b'-1:lemma:lb'
2.760280 O b'+1:lemma:o.d.'
2.735776 Temp b'lemma:\xc2\xb0c'
2.720218 O b'lemma:at'
2.711579 Technique b'-1:lemma:chip-exo'
2.699401 O b'lemma:ompr'
2.690406 Air b'-1:lemma:-'
2.684684 Gtype b'lemma:\xce\xb4soxs'
2.665215 Supp b'+1:lemma:_'
2.660630 Phase b'-1:lemma:until'
2.607235 Med b'lemma:L'
2.607235 Med b'+1:lemma:broth'
2.606476 Med b'+1:lemma:minimal'
2.603782 O b'+1:lemma:pq'
2.599075 Supp b'-1:lemma:\xc2\xb5m'
2.567370 O b'-1:lemma:\xc2\xb0c'
2.524994 Supp b'lemma:Adenine'
2.522705 Gtype b'lemma:deltaseqa'
2.522705 Gtype b'-1:lemma:old'
2.484836 Temp b'-1:lemma:43'
2.470532 Supp b'lemma:20'
2.469573 O b'lemma:culture'
2.450105 Technique b'-1:lemma:input'
2.449141 O b'postag:DT'
2.444936 Med b'+1:lemma:2.0'
2.421299 Med b'-1:lemma:ml'
2.419343 Temp b'lemma:43'
2.410866 O b'+1:lemma:mid-log'
2.405996 Supp b'lemma:iptg'
2.397598 Air b'postag:RB'
2.397388 Med b'+1:lemma:g/l'
2.360509 Gtype b'-1:lemma:nsrr'
2.349789 O b'lemma:condition'
2.348126 Gtype b'lemma:ptac'
2.347726 Gversion b'lemma:000913'
2.337057 O b'lemma:chip-arca'
2.336687 Gtype b'lemma:pk4854'
2.327964 Med b'lemma:media'
2.272835 O b'-1:lemma:stpa'
2.265750 O b'lemma:Lrp'
2.265406 O b'lemma:soxs'
2.265406 O b'lemma:soxr'
2.262228 O b'postag:VBG'
2.253322 O b'-1:lemma:l1'
2.237857 Air b'lemma:anerobically'
2.184062 O b'-1:lemma:media'
2.159204 Supp b'-1:lemma:with'
2.158856 O b'lemma:genotype/variation'
2.157878 O b'-1:lemma:dpd'
2.152540 Gtype b'lemma:dfnr'
2.148134 O b'lemma:affyexp'
2.137699 O b'postag:CC'
2.111648 Supp b'lemma:methanol'
2.108494 O b'+1:postag:VBP'
2.075540 OD b'lemma:phase'
2.075417 Gversion b'postag:CD'
2.068323 Supp b'lemma:0.2'
2.064252 Gtype b'-1:lemma:vector'
2.056563 OD b'lemma:0.3'
2.050748 OD b'-1:lemma:~'
2.050625 Gtype b'lemma:WT'
2.032571 Temp b'lemma:37'
2.018067 Gtype b'+1:lemma:_'
2.017840 O b'lemma:Fur'
2.011856 O b'lemma:argr'
2.006861 Technique b'+1:lemma:rna-seq'
1.998918 O b'lemma:purr'
1.996704 Phase b'+1:lemma:for'
1.989638 Med b'lemma:glucose'
1.943868 Phase b'-1:lemma:mid-log'
7.534104 O b'lemma:_'
6.628671 O b'lemma:1'
6.331443 Phase b'lemma:stationary'
6.147039 Supp b'lemma:Iron'
5.873757 Strain b'lemma:k-12'
5.867898 Air b'lemma:anaerobic'
5.663960 O b'lemma:2'
5.524127 Technique b'lemma:ChIP-exo'
5.510347 O b'lemma:rpob'
5.509700 Air b'lemma:aerobic'
5.383908 Technique b'lemma:chipseq'
5.138707 Supp b'lemma:pq'
5.111571 O b'lemma:3'
4.862319 Air b'-1:lemma:ChIP-Seq'
4.820668 Phase b'lemma:mid-log'
4.756582 Supp b'lemma:nitrate'
4.733587 O b'lemma:rep1'
4.695668 Supp b'lemma:nh4cl'
4.657172 Gtype b'lemma:\xce\xb4cra'
4.653346 Gversion b'lemma:asm584v2'
4.604440 O b'-1:lemma:tag'
4.598239 Gtype b'lemma:flag-tag'
4.598239 Gtype b'-1:lemma:c-terminal'
4.560223 Supp b'lemma:glucose'
4.518418 O b'lemma:rep2'
4.442957 Substrain b'lemma:mg1655'
4.384855 O b'postag:IN'
4.373803 Gtype b'lemma:arca8myc'
4.288264 O b'lemma:rep3'
4.280619 Gtype b'lemma:wt'
4.244271 Supp b'+1:lemma:\xc2\xb5m'
4.243033 O b'lemma:Cra'
4.226369 Med b'lemma:MOPS'
4.201990 Air b'lemma:Aerobic'
4.134023 Med b'lemma:LB'
4.091845 Med b'lemma:lb'
4.032302 Supp b'lemma:acetate'
3.973554 O b'lemma:b'
3.942411 OD b'lemma:od600'
3.928969 Gtype b'lemma:delta-arca'
3.863545 Supp b'lemma:no3'
3.858283 O b'lemma:\xcf\x8332'
3.832869 O b'lemma:a'
3.823681 Gtype b'lemma:fnr8myc'
3.816982 Technique b'lemma:rna-seq'
3.782384 Gtype b'-1:lemma:\xe2\x88\x86'
3.739595 Anti b'lemma:none'
3.727287 Supp b'lemma:Fe'
3.715581 O b'+1:postag:RB'
3.678487 Supp b'lemma:dpd'
3.659984 O b'lemma:.'
3.659984 O b'postag:.'
3.648715 O b'-1:lemma:ChIP-exo'
3.614582 Technique b'lemma:chip-seq'
3.583103 Gtype b'lemma:\xe2\x88\x86'
3.579453 O b'lemma:Custom'
3.579229 Supp b'lemma:rifampicin'
3.576123 O b'-1:lemma:Aerobic'
3.569749 Anti b'lemma:seqa'
3.487112 O b'lemma:-'
3.459968 Gtype b'lemma:type'
3.455121 Supp b'lemma:fructose'
3.452777 O b'postag::'
3.447911 Technique b'lemma:rnaseq'
3.441629 O b'lemma:CEL'
3.393478 Gtype b'+1:lemma:type'
3.377102 OD b'lemma:od450'
3.366350 Supp b'-1:lemma:Cra'
3.356047 Gversion b'lemma:chip-seq'
3.319052 O b'+1:lemma:od600'
3.292164 Gtype b'lemma:delta-fnr'
3.267801 Gtype b'+1:lemma:with'
3.173282 Gversion b'lemma:nc'
3.159588 Supp b'lemma:arginine'
3.157495 Supp b'+1:lemma:Deficient'
3.142138 Supp b'+1:lemma:1'
3.110124 Med b'+1:lemma:0.4'
3.070894 pH b'lemma:ph5'
3.070894 pH b'+1:lemma:.5'
3.055480 O b'postag:VBN'
3.042474 O b'-1:lemma:glucose'
3.026214 Gtype b'lemma:wild-type'
3.023824 O b'-1:lemma:0.3-0.35'
3.014842 Vess b'lemma:flask'
3.014842 Vess b'-1:lemma:warm'
3.008710 Gtype b'lemma:\xce\xb4fur'
3.002326 Air b'postag:RB'
2.997223 O b'-1:lemma:anaerobic'
2.995282 Strain b'+1:lemma:substr'
2.984104 Technique b'lemma:ChIP-Seq'
2.963817 O b'-1:lemma:lb'
2.963222 O b'lemma:affyexp'
2.932438 O b'lemma:with'
2.930598 O b'lemma:chip-arca'
2.927299 O b'lemma:or'
2.924379 Med b'lemma:m63'
2.907457 Anti b'lemma:anti-myc'
2.863249 O b'lemma:oxyr'
2.862524 O b'lemma:s'
2.860715 Gtype b'lemma:nsrr'
2.848040 Med b'+1:lemma:minimal'
2.835399 Gversion b'lemma:u00096'
2.835399 Gversion b'+1:lemma:.2'
2.784084 Gversion b'lemma:.2'
2.784084 Gversion b'-1:lemma:u00096'
2.759399 O b'lemma:argr'
2.748921 Supp b'+1:lemma:2'
2.745607 Gtype b'lemma:\xce\xb4soxs'
2.734894 Gtype b'lemma:WT'
2.724494 Supp b'+1:lemma:_'
2.724148 Gtype b'-1:lemma:ptac'
2.708775 O b'lemma:ompr'
2.704416 O b'-1:lemma:type'
2.702036 Temp b'lemma:\xc2\xb0c'
2.697776 Air b'lemma:anaerobically'
2.689994 O b'-1:lemma:stpa'
2.680820 O b'+1:lemma:anti-fur'
2.655921 Air b'lemma:Anaerobic'
2.655797 Supp b'-1:lemma:+'
2.622529 Technique b'-1:lemma:IP'
2.621136 Med b'+1:lemma:2.0'
2.617145 Gversion b'lemma:000913'
2.616146 Gtype b'lemma:\xce\xb4ompr'
2.590492 Gversion b'+1:lemma:000913'
2.585180 Temp b'-1:lemma:43'
2.573573 O b'lemma:purr'
2.573022 Supp b'lemma:nacl'
2.569061 Gtype b'+1:lemma:flagtag'
2.519791 O b'+1:lemma:pq'
2.506876 Anti b'+1:lemma:antibody'
2.476869 O b'lemma:for'
2.476779 OD b'+1:lemma:stationary'
2.468830 Gversion b'-1:lemma:nc'
2.462372 Supp b'lemma:Leu'
2.457208 O b'lemma:Lrp'
2.436354 Anti b'lemma:anti-rpos'
2.425547 Gtype b'lemma:ptac'
2.423670 O b'lemma:Fur'
2.407480 Technique b'-1:lemma:chip-exo'
2.398179 Gtype b'lemma:pk4854'
2.385757 O b'+1:lemma:o.d.'
2.379658 Technique b'-1:lemma:input'
2.376821 O b'+1:lemma:chip-seq'
2.371298 O b'lemma:chip'
2.356254 Gtype b'+1:lemma:pq'
2.346453 Substrain b'+1:lemma:phtpg'
2.325961 Supp b'lemma:Adenine'
2.324750 Gtype b'lemma:deltaseqa'
2.324750 Gtype b'-1:lemma:old'
2.319652 O b'-1:lemma:dpd'
2.309116 Temp b'lemma:43'
2.274038 Phase b'lemma:phase'
2.271043 O b'lemma:2-3'
2.257073 O b'lemma:soxs'
2.257073 O b'lemma:soxr'
2.244724 Gtype b'-1:lemma:rpob'
2.229381 Technique b'+1:lemma:chip-exo'
2.222498 Temp b'-1:lemma:\xcf\x8332'
2.216473 Phase b'-1:lemma:mid-log'
2.208114 Air b'-1:lemma:-'
2.198129 O b'postag:SYM'
2.197977 Temp b'-1:lemma:sample'
2.197671 pH b'lemma:.5'
2.197671 pH b'-1:lemma:ph5'
2.191655 O b'lemma:pt7'
2.179497 Temp b'-1:lemma:37'
2.163485 O b'lemma:at'
2.159035 O b'-1:lemma:l1'
2.157894 Med b'lemma:L'
2.157894 Med b'+1:lemma:broth'
2.155748 Gtype b'+1:lemma:ph5'
2.154483 Supp b'+1:lemma:hour'
2.149987 Med b'postag:NNP'
2.130185 Gtype b'lemma:\xce\xb4oxyr'
2.128728 Technique b'postag:NNP'
2.120879 Gtype b'+1:lemma:aerobic'
2.119345 O b'+1:lemma:43'
2.118846 Temp b'+1:lemma:\xc2\xb0c'
2.117976 O b'postag:DT'
2.112237 Gtype b'lemma:\xce\xb4soxr'
2.103111 O b'lemma:chip-fnr'
2.095565 Gtype b'-1:lemma:_'
2.095139 Air b'lemma:anerobically'
2.088059 pH b'+1:postag:CD'
2.082289 Vess b'-1:postag:VBN'
2.082182 Air b'+1:lemma:at'
2.072000 Supp b'-1:lemma:\xc2\xb5m'
2.063372 O b'lemma:culture'
2.052919 Supp b'+1:postag:CC'
2.051661 Gtype b'+1:lemma:_'
2.042397 Supp b'lemma:iptg'
2.038377 OD b'-1:lemma:~'
2.032972 Air b'-1:postag::'
2.032763 Med b'lemma:broth'
2.032763 Med b'-1:lemma:L'
2.015625 O b'lemma:genotype/variation'
2.011175 Phase b'+1:lemma:for'
2.009864 Med b'lemma:glucose'
2.006608 Med b'+1:lemma:+'
2.006544 O b'postag:CC'
Top negative:
0.000312 OD b'-1:lemma:mid-log'
0.000096 OD b'-1:postag:VBN'
0.000087 Gtype b'-1:lemma:small'
0.000087 Med b'-1:lemma:g/l'
0.000084 Agit b'+1:postag:NN'
0.000056 O b'+1:lemma:ChIP-Seq'
0.000053 Supp b'-1:lemma:1g/l'
0.000051 O b'lemma:hour'
0.000051 Gtype b'lemma:cra'
0.000036 OD b'lemma:and'
0.000021 Temp b'lemma:-lrb-'
0.000021 Temp b'postag:-LRB-'
0.000019 O b'-1:lemma:l2'
0.000014 Technique b'+1:lemma:-rrb-'
0.000014 Technique b'+1:postag:-RRB-'
0.000007 Gtype b'lemma:small'
-0.000002 Gversion b'-1:postag:NN'
-0.000046 O b'-1:lemma:g/l'
-0.000070 Supp b'-1:lemma:and'
-0.000073 O b'-1:lemma:1'
-0.000129 Med b'postag:CD'
-0.000455 O b'-1:lemma:20'
-0.000511 OD b'+1:postag:-LRB-'
-0.000708 OD b'+1:postag:NNS'
-0.000735 Gtype b'postag:CD'
-0.000807 Gtype b'+1:postag:NNS'
-0.000867 O b'+1:postag:CD'
-0.000974 Gtype b'-1:postag:CD'
-0.001057 O b'+1:lemma:~'
-0.001061 O b'+1:lemma:fnr'
-0.001528 Air b'+1:lemma:70'
-0.001678 O b'-1:lemma:the'
-0.001682 O b'postag:VBP'
-0.002024 O b'+1:lemma:min'
-0.002325 Phase b'-1:postag:NN'
-0.002352 O b'lemma:n2'
-0.002519 O b'lemma:\xce\xb4fur'
-0.002662 Air b'lemma:,'
-0.002662 Air b'postag:,'
-0.005486 Gtype b'+1:lemma:2'
-0.006088 O b'+1:lemma:o2'
-0.006828 Air b'-1:lemma:and'
-0.008457 Temp b'-1:lemma:\xc2\xb0c'
-0.009847 O b'-1:lemma:,'
-0.009847 O b'-1:postag:,'
-0.010744 O b'+1:lemma:phase'
-0.011644 O b'lemma:cell'
-0.011902 Gtype b'-1:postag:NNP'
-0.013075 OD b'+1:lemma:and'
-0.013273 O b'-1:lemma:\xe2\x88\x86'
-0.013803 O b'lemma:e.'
-0.013807 O b'-1:lemma:sample'
-0.013821 O b'+1:lemma:mm'
-0.014710 O b'+1:lemma:rep1'
-0.015201 Air b'+1:lemma:-lrb-'
-0.015350 OD b'+1:postag:CD'
-0.017836 O b'+1:lemma:grow'
-0.019975 O b'lemma:anaerobic'
-0.024268 Air b'+1:postag:CD'
-0.025672 O b'lemma:medium'
-0.025888 O b'+1:lemma:95'
-0.026118 O b'lemma:k-12'
-0.027112 O b'+1:lemma:25'
-0.029447 Air b'postag:CC'
-0.030441 O b'lemma:m63'
-0.030598 OD b'+1:postag:CC'
-0.032367 O b'lemma:grow'
-0.035584 Air b'+1:postag:-LRB-'
-0.039003 O b'lemma:mg/ml'
-0.039003 O b'-1:lemma:150'
-0.041109 O b'-1:lemma:e.'
-0.043248 Supp b'-1:postag:NN'
-0.049539 Gversion b'+1:postag:NN'
-0.050421 O b'lemma:25'
-0.053998 Temp b'postag:JJ'
-0.060680 O b'-1:lemma:at'
-0.060890 Phase b'-1:postag:JJ'
-0.061474 O b'lemma:lb'
-0.064297 Med b'-1:postag:NN'
-0.065687 O b'-1:postag:VBN'
-0.067931 O b'-1:lemma:o2'
-0.068731 O b'+1:lemma:5'
-0.069126 O b'+1:lemma:shake'
-0.069173 O b'-1:lemma:25'
-0.071503 Air b'-1:postag:CC'
-0.075779 O b'+1:lemma:0.4'
-0.077365 Air b'-1:lemma:or'
-0.080349 O b'lemma:30'
-0.087136 O b'-1:lemma:mm'
-0.089014 pH b'postag:NN'
-0.089177 O b'lemma:o2'
-0.097371 Supp b'lemma:and'
-0.101711 Gtype b'-1:postag:DT'
-0.104337 O b'+1:lemma:antibody'
-0.113298 O b'-1:lemma:um'
-0.113298 O b'+1:lemma:paraquat'
-0.118293 Phase b'+1:postag:NN'
-0.119989 O b'-1:lemma:30'
-0.126122 Phase b'-1:lemma:at'
-0.135089 Supp b'postag:CC'
-0.137129 O b'-1:postag:IN'
-0.138660 O b'+1:lemma:arginine'
-0.139143 O b'+1:lemma:until'
-0.162860 O b'lemma:150'
-0.162860 O b'+1:lemma:mg/ml'
-0.164772 OD b'postag:JJ'
-0.171975 Temp b'postag:NN'
-0.183842 O b'lemma:phase'
-0.184042 O b'+1:lemma:-rrb-'
-0.185930 O b'-1:lemma:-lrb-'
-0.185933 O b'-1:lemma:rifampicin'
-0.195035 Med b'-1:postag:IN'
-0.204004 Anti b'+1:postag:JJ'
-0.210272 Gtype b'lemma:delta'
-0.217084 Supp b'+1:postag:VBN'
-0.218515 O b'lemma:co2'
-0.219042 O b'-1:lemma:of'
-0.220276 O b'+1:lemma:%'
-0.228465 Med b'+1:postag:NN'
-0.229909 O b'-1:lemma:n2'
-0.230847 OD b'+1:postag:NN'
-0.248221 O b'-1:lemma:ml'
-0.250359 Anti b'+1:lemma:anti-fur'
-0.279734 O b'+1:lemma:0.3'
-0.283648 O b'-1:postag:-LRB-'
-0.286892 O b'-1:lemma:mid-log'
-0.312152 Gtype b'-1:postag:NN'
-0.322232 O b'-1:lemma:0.1'
-0.331861 O b'+1:postag:-RRB-'
-0.336159 O b'-1:lemma:from'
-0.340286 Med b'+1:postag:IN'
-0.341633 O b'+1:postag:IN'
-0.355453 O b'-1:lemma:cra'
-0.366315 O b'+1:lemma:.'
-0.366315 O b'+1:postag:.'
-0.376920 O b'postag:RB'
-0.405053 O b'lemma:\xe2\x88\x86'
-0.424434 O b'+1:postag:NNS'
-0.430071 O b'lemma:aerobically'
-0.440727 Air b'postag:CD'
-0.446825 O b'lemma:anaerobically'
-0.447447 O b'-1:lemma:od600'
-0.465924 O b'+1:lemma:cell'
-0.468267 O b'lemma:od600'
-0.472878 O b'lemma:dissolve'
-0.502409 O b'lemma:20'
-0.508433 O b'-1:lemma:~'
-0.524904 Air b'-1:postag:JJ'
-0.543671 O b'+1:lemma:fecl2'
-0.554628 O b'-1:lemma:0.2'
-0.556138 Temp b'+1:lemma:to'
-0.556138 Temp b'+1:postag:TO'
-0.589220 Supp b'+1:lemma:rifampicin'
-0.610212 O b'lemma:0.3'
-0.622831 O b'lemma:media'
-0.657974 O b'-1:lemma:37'
-0.677014 Supp b'-1:lemma:%'
-0.678005 O b'+1:lemma:\xc2\xb0c'
-0.707832 O b'lemma:of'
-0.722898 O b'-1:lemma:rpob'
-0.723244 O b'+1:lemma:+'
-0.755790 OD b'lemma:-lrb-'
-0.789730 O b'lemma:0.2'
-0.814406 O b'-1:lemma:grow'
-0.909402 O b'-1:postag::'
-0.915529 O b'-1:postag:VBG'
-0.926818 Technique b'-1:postag::'
-0.933497 OD b'postag:-LRB-'
-0.980631 O b'lemma:fecl2'
-1.017727 O b'-1:lemma:dissolve'
-1.017727 O b'+1:lemma:methanol'
-1.020513 O b'lemma:2h'
-1.020513 O b'-1:lemma:additional'
-1.034839 O b'lemma:37'
-1.121637 O b'lemma:0.1'
-1.205775 O b'+1:lemma:supplement'
-1.230075 Supp b'+1:lemma:acetate'
-1.250120 O b'+1:postag:VBG'
-1.256564 O b'lemma:wt'
-1.276371 O b'+1:lemma:g/l'
-1.304341 O b'-1:lemma:IP'
-1.328183 O b'-1:lemma:co2'
-1.391087 O b'-1:lemma:ompr'
-1.452522 Anti b'postag:NNP'
-1.489210 O b'+1:lemma:at'
-1.603327 Air b'+1:postag:JJ'
-1.726036 O b'lemma:mid-log'
-1.737094 O b'lemma:rifampicin'
-1.758957 O b'-1:lemma:nsrr'
-1.762287 Supp b'postag:JJ'
-1.770399 Air b'postag:NN'
-1.810971 O b'+1:lemma:hour'
-2.081711 Phase b'postag:JJ'
-2.115674 O b'lemma:methanol'
-2.200974 O b'+1:lemma:in'
-2.263160 O b'+1:lemma:2'
-2.388655 O b'-1:lemma:2'
-2.590523 O b'+1:lemma:1'
-4.545984 O b'-1:lemma::'
-4.681648 O b'-1:lemma:_'
-0.030705 O b'-1:lemma:chip-exo'
-0.033076 OD b'lemma:~'
-0.042809 Gtype b'lemma:control'
-0.044545 O b'-1:postag:DT'
-0.050305 O b'-1:lemma:rna'
-0.052149 Supp b'-1:postag:NN'
-0.059299 O b'lemma:paraquat'
-0.061867 Med b'-1:postag:NN'
-0.063794 O b'-1:lemma:mm'
-0.064411 OD b'+1:lemma:and'
-0.065739 Supp b'-1:postag:JJ'
-0.067296 Med b'-1:postag:CD'
-0.068394 Air b'-1:postag:CC'
-0.071978 O b'+1:lemma:-rrb-'
-0.072542 Phase b'-1:lemma:at'
-0.072594 O b'+1:lemma:5'
-0.073614 Phase b'+1:postag:NN'
-0.074214 O b'+1:lemma:-lcb-'
-0.078588 O b'+1:lemma:delta'
-0.080091 O b'-1:lemma:the'
-0.084524 O b'-1:lemma:of'
-0.084670 O b'-1:lemma:fresh'
-0.092681 Gtype b'+1:lemma:cra'
-0.094545 Air b'-1:lemma:or'
-0.098369 O b'lemma:o2'
-0.102102 Air b'postag:CD'
-0.103275 OD b'postag:JJ'
-0.104224 O b'-1:lemma:with'
-0.110720 Supp b'lemma:and'
-0.116486 O b'lemma:mg/ml'
-0.116486 O b'-1:lemma:150'
-0.117260 Technique b'-1:lemma::'
-0.123127 Med b'postag:-LRB-'
-0.125962 O b'-1:lemma:affinity'
-0.126151 Med b'lemma:-lrb-'
-0.132649 Supp b'-1:lemma:and'
-0.137087 OD b'+1:lemma:0.4'
-0.138413 O b'-1:lemma:delta'
-0.138623 O b'+1:lemma:mg1655'
-0.144390 O b'lemma:medium'
-0.147406 O b'lemma:e.'
-0.149940 O b'-1:postag:VBN'
-0.171711 O b'-1:postag:IN'
-0.171840 O b'+1:lemma:mm'
-0.172335 O b'-1:lemma:iptg'
-0.172927 O b'lemma:pahse'
-0.174410 O b'-1:lemma:e.'
-0.180259 O b'+1:lemma:0.4'
-0.184212 Gtype b'-1:postag:DT'
-0.192140 O b'lemma:aerobically'
-0.195145 O b'-1:lemma:20'
-0.196338 O b'-1:lemma:-lrb-'
-0.202283 O b'+1:lemma:shake'
-0.203197 O b'lemma:co2'
-0.203279 O b'+1:lemma:antibody'
-0.217474 Gversion b'+1:postag:NN'
-0.221749 O b'-1:lemma:o2'
-0.225204 Supp b'+1:postag:IN'
-0.227101 O b'lemma:n2'
-0.229126 O b'+1:lemma:.'
-0.229126 O b'+1:postag:.'
-0.229774 Gtype b'postag:CD'
-0.229916 O b'+1:lemma:minimal'
-0.234531 Gtype b'-1:postag:CD'
-0.235270 Supp b'-1:postag:NNP'
-0.241460 O b'-1:lemma:n2'
-0.246278 Supp b'-1:postag:VBG'
-0.247884 O b'-1:lemma:mid-log'
-0.249629 O b'lemma:grow'
-0.256652 Anti b'+1:postag:JJ'
-0.258827 O b'-1:postag:-LRB-'
-0.259766 OD b'+1:lemma:mid-log'
-0.260676 O b'lemma:30'
-0.262198 O b'lemma:lb'
-0.264023 Med b'+1:postag:NN'
-0.264423 O b'postag:RB'
-0.274539 O b'+1:lemma:b'
-0.274643 O b'+1:lemma:rep1'
-0.276742 O b'-1:lemma:um'
-0.276742 O b'+1:lemma:paraquat'
-0.279342 Med b'+1:postag:NNS'
-0.286088 O b'+1:lemma:phase'
-0.286355 O b'lemma:nacl'
-0.288644 Med b'postag:CD'
-0.291831 Temp b'postag:JJ'
-0.292363 O b'+1:lemma:or'
-0.292909 O b'+1:lemma:_'
-0.309719 O b'-1:lemma:minimal'
-0.310879 O b'lemma:minimal'
-0.316065 O b'-1:lemma:0.1'
-0.317315 O b'lemma:glucose'
-0.331509 O b'lemma:\xc2\xb0c'
-0.335559 O b'-1:lemma:from'
-0.337031 Gtype b'lemma:_'
-0.367204 O b'-1:lemma:od600'
-0.376428 O b'+1:lemma:Aerobic'
-0.392320 Supp b'postag:CC'
-0.394063 Med b'-1:postag:IN'
-0.397299 O b'-1:lemma:g/l'
-0.400353 O b'+1:postag:IN'
-0.411740 O b'+1:postag:-RRB-'
-0.414297 Supp b'+1:lemma:glucose'
-0.417115 O b'-1:lemma:grow'
-0.434939 O b'+1:lemma:cell'
-0.455419 Technique b'-1:postag::'
-0.464919 O b'+1:lemma:dissolve'
-0.465860 O b'+1:lemma:%'
-0.466338 O b'+1:lemma:until'
-0.481860 O b'-1:lemma:rifampicin'
-0.483707 pH b'postag:NN'
-0.485247 Gtype b'-1:postag:SYM'
-0.501917 Gtype b'lemma:delta'
-0.503189 O b'lemma:mg1655'
-0.508938 Gtype b'+1:lemma:\xe2\x88\x86'
-0.518932 OD b'+1:postag:NN'
-0.534335 O b'-1:lemma:until'
-0.547846 Supp b'+1:postag:VBN'
-0.575194 O b'-1:lemma:cra'
-0.583475 OD b'lemma:-lrb-'
-0.585808 Supp b'+1:lemma:rifampicin'
-0.587062 Med b'+1:postag:IN'
-0.591031 O b'lemma:phase'
-0.604967 O b'-1:lemma:\xe2\x88\x86'
-0.607989 O b'lemma:m63'
-0.609363 O b'+1:lemma:300'
-0.622369 Temp b'-1:lemma:\xc2\xb0c'
-0.627260 Temp b'postag:NN'
-0.639822 O b'lemma:od600'
-0.640212 O b'lemma:150'
-0.640212 O b'+1:lemma:mg/ml'
-0.652984 OD b'postag:-LRB-'
-0.673873 Temp b'+1:lemma:to'
-0.673873 Temp b'+1:postag:TO'
-0.674063 O b'+1:lemma:c'
-0.677850 O b'lemma:purify'
-0.683914 O b'lemma:of'
-0.689091 O b'+1:postag:NNS'
-0.698464 O b'-1:lemma:1'
-0.705692 O b'-1:lemma:30'
-0.714318 O b'lemma:dissolve'
-0.716763 O b'lemma:dpd'
-0.740206 O b'+1:lemma:\xc2\xb0c'
-0.752744 O b'+1:lemma:arginine'
-0.788403 Phase b'-1:postag:JJ'
-0.834026 O b'-1:lemma:~'
-0.843212 O b'lemma:k-12'
-0.849778 O b'-1:lemma:co2'
-0.851042 O b'+1:lemma:0.3'
-0.909147 O b'lemma:media'
-0.910481 Air b'-1:postag:JJ'
-0.915586 O b'lemma:20'
-0.923944 O b'lemma:\xe2\x88\x86'
-0.924668 O b'lemma:anaerobically'
-0.929792 O b'+1:lemma:fecl2'
-0.940939 Anti b'+1:lemma:anti-fur'
-0.942359 Supp b'-1:lemma:%'
-0.975994 O b'+1:lemma:supplement'
-0.981045 O b'lemma:mid-log'
-0.985760 O b'-1:lemma:dissolve'
-0.985760 O b'+1:lemma:methanol'
-0.991880 O b'lemma:anaerobic'
-1.004133 O b'-1:lemma:0.2'
-1.047975 O b'-1:postag:VBG'
-1.056100 O b'lemma:\xce\xb4fur'
-1.058032 O b'lemma:2h'
-1.058032 O b'-1:lemma:additional'
-1.065496 O b'lemma:0.3'
-1.108652 O b'lemma:0.1'
-1.114961 O b'+1:postag:VBG'
-1.137551 Supp b'+1:lemma:acetate'
-1.154485 O b'lemma:0.2'
-1.248669 O b'+1:lemma:at'
-1.249902 O b'lemma:fecl2'
-1.259624 O b'-1:lemma:rpob'
-1.282405 O b'+1:lemma:in'
-1.300959 O b'postag:VBP'
-1.307774 O b'-1:postag::'
-1.330717 Air b'+1:postag:JJ'
-1.343057 O b'+1:lemma:g/l'
-1.370626 O b'lemma:37'
-1.394308 O b'-1:lemma:sample'
-1.451537 O b'-1:lemma:ompr'
-1.539969 Supp b'postag:JJ'
-1.574060 Air b'postag:NN'
-1.626564 O b'lemma:rifampicin'
-1.646551 Phase b'postag:JJ'
-1.690746 O b'-1:lemma:ml'
-1.723948 Anti b'postag:NNP'
-1.752448 O b'-1:lemma:37'
-1.808172 O b'-1:lemma:nsrr'
-1.877830 O b'-1:lemma:IP'
-1.901078 O b'lemma:wt'
-1.911145 O b'+1:lemma:+'
-2.060304 O b'-1:lemma:2'
-2.238911 O b'lemma:methanol'
-2.346827 O b'+1:lemma:2'
-2.515820 O b'+1:lemma:hour'
-2.737658 O b'+1:lemma:1'
-3.430701 O b'-1:lemma:_'
-3.751199 O b'-1:lemma::'
......
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.37575104918065877, 'c2': 0.014068909404949474}
best CV score:0.8255861440832887
model size: 0.09M
Flat F1: 0.8259332647953259
precision recall f1-score support
OD 0.652 0.405 0.500 37
pH 1.000 1.000 1.000 12
Technique 1.000 1.000 1.000 22
Med 1.000 0.912 0.954 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.807 0.742 0.773 62
Anti 0.900 1.000 0.947 9
Strain 1.000 1.000 1.000 1
Gtype 0.883 0.858 0.871 106
Substrain 0.000 0.000 0.000 1
Supp 0.887 0.691 0.777 136
Gversion 0.000 0.000 0.000 0
avg / total 0.880 0.785 0.826 480
Top likely transitions:
OD -> OD 7.084434
Agit -> Agit 6.186786
Temp -> Temp 5.929541
Air -> Air 5.333804
Med -> Med 5.303931
Supp -> Supp 4.741743
Gversion -> Gversion 4.640552
Anti -> Anti 4.494565
Phase -> Phase 4.151550
Gtype -> Gtype 4.131202
Technique -> Technique 3.603317
O -> O 3.497598
pH -> pH 1.761638
O -> Supp 1.456972
Gtype -> Supp 1.262299
Air -> O 1.158446
O -> Technique 0.833897
OD -> Phase 0.824018
O -> Gtype 0.581942
Temp -> O 0.517869
Med -> O 0.476850
Substrain -> Gtype 0.368872
Supp -> O 0.290899
Technique -> Air 0.268494
O -> Anti 0.125794
O -> Gversion 0.041462
O -> OD 0.003049
Gtype -> Air 0.000025
O -> Air -0.236692
Gtype -> O -0.409359
OD -> O -0.632212
Med -> Supp -0.705455
Technique -> O -0.720532
Substrain -> O -0.793543
Agit -> O -0.912986
Top unlikely transitions:
OD -> OD 7.084434
Agit -> Agit 6.186786
Temp -> Temp 5.929541
Air -> Air 5.333804
Med -> Med 5.303931
Supp -> Supp 4.741743
Gversion -> Gversion 4.640552
Anti -> Anti 4.494565
Phase -> Phase 4.151550
Gtype -> Gtype 4.131202
Technique -> Technique 3.603317
O -> O 3.497598
pH -> pH 1.761638
O -> Supp 1.456972
Gtype -> Supp 1.262299
Air -> O 1.158446
O -> Technique 0.833897
OD -> Phase 0.824018
O -> Gtype 0.581942
Temp -> O 0.517869
Med -> O 0.476850
Substrain -> Gtype 0.368872
Supp -> O 0.290899
Technique -> Air 0.268494
O -> Anti 0.125794
O -> Gversion 0.041462
O -> OD 0.003049
Gtype -> Air 0.000025
O -> Air -0.236692
Gtype -> O -0.409359
OD -> O -0.632212
Med -> Supp -0.705455
Technique -> O -0.720532
Substrain -> O -0.793543
Agit -> O -0.912986
Top positive:
5.026788 Anti b'-2:lemma:antibody'
4.581170 O b'word[:2]:re'
4.532914 O b'-2:lemma:_'
4.141075 Technique b'word[:2]:Ch'
4.000190 Air b'lemma:anaerobic'
3.925942 O b'word[:2]:Rp'
3.588650 O b'lemma:1'
3.588650 O b'word:1'
3.545521 O b'postag::'
3.537943 O b'postag:IN'
3.493406 O b'+2:lemma:\xc2\xb0c'
3.393325 Gtype b'-2:lemma:genotype/variation'
3.329554 O b'word:A'
3.068046 Gtype b'word[:1]:\xce\x94'
3.034385 O b'word[:1]:G'
3.015992 O b'word[:1]:S'
2.836526 Supp b'word[:2]:Fe'
2.820630 Air b'word[:2]:Ae'
2.820630 Air b'word:Aerobic'
2.738575 Gtype b'word[:2]:Fl'
2.722116 Air b'word[:1]:A'
2.638126 Temp b'word[:1]:3'
2.523318 O b'lemma:3'
2.523318 O b'word:3'
2.522986 O b'postag:CC'
2.473237 O b'lemma:2'
2.473237 O b'word:2'
2.468222 O b'postag:VBN'
2.391799 Gtype b'-2:lemma:delta'
2.346345 O b'word[:1]:B'
2.285720 Gtype b'lemma:type'
2.285720 Gtype b'word[:2]:ty'
2.285720 Gtype b'word:type'
2.284112 Gtype b'+2:lemma:glucose'
2.211360 Technique b'word[:2]:RN'
2.182686 O b'+1:postag:RB'
2.177098 O b'postag:DT'
2.169923 Phase b'lemma:stationary'
2.169923 Phase b'word:stationary'
2.155319 Anti b'+2:lemma:antibody'
2.151791 O b'lemma:.'
2.151791 O b'postag:.'
2.151791 O b'word:.'
2.145140 Gtype b'-1:lemma:\xe2\x88\x86'
2.145140 Gtype b'-1:word:\xe2\x88\x86'
2.134554 Supp b'-2:lemma:supplement'
2.134313 O b'-1:word:Aerobic'
2.089564 OD b'word[:2]:OD'
2.068607 Supp b'lemma:arginine'
2.061542 O b'isLower'
2.024477 Supp b'lemma:nitrate'
2.024477 Supp b'word[:2]:ni'
2.024477 Supp b'word:nitrate'
1.995233 O b'word[:2]:ge'
1.977149 O b'-1:lemma:tag'
1.954967 O b'+2:lemma:cra'
1.948541 O b'+2:lemma:fructose'
1.925028 Med b'word[:1]:L'
1.908907 Med b'word[:1]:M'
1.872648 Supp b'word[:1]:I'
1.862418 Med b'+2:lemma:with'
1.818612 Phase b'lemma:mid-log'
1.818612 Phase b'word:mid-log'
1.808244 Temp b'-1:word:sample'
1.800900 Supp b'+1:word:hours'
1.794367 O b'lemma:_'
1.794367 O b'word[:1]:_'
1.794367 O b'word:_'
1.771399 O b'-2:lemma:~'
1.768285 Temp b'-1:lemma:sample'
1.765360 OD b'word[:1]:O'
1.739074 O b'word[:2]:ch'
1.734592 Gtype b'word[:1]:d'
1.733152 Supp b'-1:word:Cra'
1.720079 O b'+1:word:ChIP-Seq'
1.719613 O b'+1:postag:VBP'
1.680129 Technique b'word[:1]:R'
1.672356 O b'+2:lemma:chipseq'
1.646401 Supp b'-1:postag:CC'
1.634591 Air b'+2:lemma:37'
1.616241 Gtype b'-2:postag:DT'
1.602328 Supp b'+1:lemma:\xc2\xb5m'
1.602328 Supp b'+1:word:\xc2\xb5M'
1.563258 Gtype b'word[:1]:W'
1.536685 Air b'word[:1]:a'
1.524926 Supp b'-2:lemma:purr'
1.515693 Air b'word[:2]:An'
1.515693 Air b'word:Anaerobic'
1.512353 Supp b'+2:lemma:rifampicin'
1.503664 Med b'word[:1]:g'
1.496011 Supp b'word[:1]:N'
1.494242 O b'-1:lemma:anaerobic'
1.482358 O b'-1:lemma:lb'
1.476473 Gtype b'lemma:nsrr'
1.476473 Gtype b'word[:2]:Ns'
1.476473 Gtype b'word:NsrR'
1.475408 pH b'+1:postag:CD'
1.464474 Supp b'word[:2]:gl'
1.459471 Air b'word[:2]:an'
1.449561 O b'-1:word:tag'
1.441346 O b'-2:lemma:medium'
1.436637 Gtype b'-2:postag:NNS'
1.405198 Phase b'-2:lemma:phase'
1.403755 Supp b'word[:1]:\xc2\xb5'
1.381552 Technique b'word[:1]:C'
1.367426 O b'word[:1]:C'
1.358817 Anti b'word[:2]:an'
1.352736 Supp b'+1:lemma:2'
1.352736 Supp b'+1:word:2'
1.338532 Technique b'symb'
1.327081 pH b'lemma:ph5'
1.327081 pH b'+1:lemma:.5'
1.327081 pH b'word:pH5'
1.327081 pH b'+1:word:.5'
1.320139 O b'lemma:-'
1.320139 O b'word:-'
1.312227 OD b'word[:2]:0.'
1.306758 Air b'-2:postag:CD'
1.306653 Technique b'lemma:ChIP-exo'
1.294854 Supp b'+1:lemma:1'
1.294854 Supp b'+1:word:1'
1.291466 Gtype b'hGreek'
1.288351 Gtype b'lemma:wt'
1.281820 Med b'isUpper'
1.280384 O b'word[:2]:Cu'
1.273897 Strain b'lemma:k-12'
1.273897 Strain b'word[:2]:K-'
1.273897 Strain b'word:K-12'
1.263759 Supp b'lemma:pq'
1.263759 Supp b'word[:2]:PQ'
1.263759 Supp b'word:PQ'
1.262897 Gversion b'postag:CD'
1.260684 Substrain b'lemma:mg1655'
1.260684 Substrain b'word[:2]:MG'
1.260684 Substrain b'word:MG1655'
1.257247 Med b'+2:lemma:b2'
1.250577 Gtype b'word[:2]:cr'
1.245268 Supp b'lemma:Iron'
1.245268 Supp b'word[:2]:Ir'
1.245268 Supp b'word:Iron'
1.245268 Supp b'+1:word:Deficient'
1.245268 Supp b'-2:lemma:Anaerobic'
1.242618 Gtype b'postag:JJ'
1.229834 Gversion b'lemma:chip-seq'
1.223343 O b'+2:postag:JJ'
1.202557 O b'lemma:a'
1.198655 Gtype b'+1:lemma:type'
1.198655 Gtype b'+1:word:type'
1.198344 Strain b'word[:1]:K'
1.192715 Gtype b'lemma:\xe2\x88\x86'
1.192715 Gtype b'word[:1]:\xe2\x88\x86'
1.192715 Gtype b'word:\xe2\x88\x86'
1.191305 O b'+2:lemma:of'
1.187697 Med b'lemma:MOPS'
1.187697 Med b'word[:2]:MO'
1.187697 Med b'word:MOPS'
1.171501 Substrain b'word[:1]:M'
1.171059 Air b'postag:RB'
1.169190 Med b'word[:2]:LB'
1.169190 Med b'word:LB'
1.154631 Gversion b'word:ChIP-Seq'
1.142086 O b'isNumber'
1.141002 Gversion b'-2:lemma:build'
1.140702 Gtype b'-2:lemma:genotype'
1.126546 Technique b'+2:lemma:ph5'
1.113495 O b'+1:postag:NNP'
1.108444 O b'-2:lemma:fructose'
1.100127 O b'-2:lemma:co2'
1.093797 O b'-2:lemma:\xe2\x88\x86'
1.087633 Supp b'+1:lemma:_'
1.087633 Supp b'+1:word:_'
1.087387 O b'word[:1]:H'
1.079339 Anti b'+1:lemma:antibody'
1.079339 Anti b'+1:word:antibody'
1.053803 Supp b'lemma:acetate'
1.053803 Supp b'word:acetate'
1.052666 Supp b'-1:postag:CD'
1.041028 Anti b'-2:lemma:polymerase'
1.026459 O b'+1:postag:VBN'
1.021797 O b'-2:lemma:mid-log'
1.014372 Gtype b'-1:lemma:rpob'
1.014372 Gtype b'-1:word:RpoB'
0.999828 O b'+1:postag:VBZ'
0.999620 Gversion b'+1:postag:CD'
0.998043 O b'word[:2]:Cr'
0.998043 O b'word:Cra'
0.994250 Supp b'word[:2]:0.'
0.985843 O b'lemma:purr'
0.985843 O b'word:PurR'
0.983781 Supp b'word[:1]:1'
0.980764 Gtype b'-2:postag::'
0.978629 O b'lemma:b'
0.978629 O b'word:B'
0.978589 O b'-1:lemma:media'
0.978589 O b'-1:word:media'
0.978508 O b'lemma:at'
0.969017 O b'word[:1]:c'
0.967404 O b'word[:1]:R'
0.958802 O b'word[:1]:E'
0.953468 O b'+1:postag::'
Top negative:
-0.052044 O b'+1:lemma:-rrb-'
-0.052044 O b'+1:word:-RRB-'
-0.056554 O b'word[:2]:ce'
-0.060548 Phase b'-2:postag:NN'
-0.062690 Supp b'+2:lemma:glucose'
-0.064571 Agit b'symb'
-0.065267 O b'+1:lemma:_'
-0.065267 O b'+1:word:_'
-0.068598 O b'-1:lemma:rpob'
-0.068598 O b'-1:word:RpoB'
-0.068684 Gtype b'lemma:_'
-0.068684 Gtype b'word[:1]:_'
-0.068684 Gtype b'word:_'
-0.074203 Air b'+2:lemma:and'
-0.074727 O b'-1:lemma:iptg'
-0.074727 O b'-1:word:IPTG'
-0.074850 OD b'+1:postag:CD'
-0.077216 O b'+2:lemma:+'
-0.078067 Temp b'+2:lemma:to'
-0.078067 Temp b'+2:postag:TO'
-0.079117 O b'+2:lemma:mg1655'
-0.079758 O b'word[:2]:30'
-0.080740 Anti b'+2:postag:JJ'
-0.083302 Air b'-1:postag:RB'
-0.083969 O b'-2:lemma:anaerobically'
-0.084742 Supp b'isNumber'
-0.086180 O b'+2:lemma:anaerobically'
-0.092175 O b'-2:postag:-LRB-'
-0.095060 O b'word[:1]:F'
-0.097644 Air b'postag:CC'
-0.099744 O b'lemma:k-12'
-0.099744 O b'word[:2]:K-'
-0.099744 O b'word:K-12'
-0.106457 O b'lemma:media'
-0.106457 O b'word:media'
-0.108219 O b'+1:lemma:until'
-0.108219 O b'+1:word:until'
-0.108963 Supp b'lemma:2'
-0.108963 Supp b'word:2'
-0.110990 OD b'+1:postag:IN'
-0.111975 Gtype b'-1:postag:NN'
-0.112503 O b'+1:word:cells'
-0.113137 Gtype b'-1:lemma:,'
-0.113137 Gtype b'-1:postag:,'
-0.113137 Gtype b'-1:word:,'
-0.116950 O b'-1:lemma:37'
-0.116950 O b'-1:word:37'
-0.117677 O b'-1:word:the'
-0.120669 O b'+1:lemma:supplement'
-0.120669 O b'+1:word:supplemented'
-0.121823 O b'+1:postag:-RRB-'
-0.121829 O b'word[:1]:p'
-0.129179 O b'+2:lemma:-rrb-'
-0.130177 O b'-1:lemma:mid-log'
-0.130177 O b'-1:word:mid-log'
-0.133448 O b'-1:lemma:the'
-0.133564 O b'word[:2]:Fe'
-0.134575 O b'+1:lemma:cell'
-0.135676 O b'-1:lemma:nsrr'
-0.135676 O b'-1:word:NsrR'
-0.136278 Med b'-2:lemma:grow'
-0.137702 OD b'-2:postag:JJ'
-0.138850 O b'+2:lemma:a'
-0.139158 O b'postag:NN'
-0.141309 Air b'-2:postag:RB'
-0.142269 Temp b'-2:postag:NN'
-0.150696 Air b'-2:postag:CC'
-0.152422 OD b'postag:CD'
-0.155346 Gtype b'isNumber'
-0.157347 O b'lemma:phase'
-0.157347 O b'word:phase'
-0.158371 Supp b'hGreek'
-0.162404 O b'+2:lemma:medium'
-0.163618 O b'-2:postag:-RRB-'
-0.166539 O b'+2:postag:RB'
-0.168007 Supp b'+2:postag:NNS'
-0.169738 O b'lemma:of'
-0.169738 O b'word[:2]:of'
-0.169738 O b'word:of'
-0.172303 O b'+2:lemma:.'
-0.172303 O b'+2:postag:.'
-0.172600 O b'-1:lemma:sample'
-0.178258 O b'+1:word:hours'
-0.185213 Anti b'+2:lemma:polyclonal'
-0.186446 O b'word[:2]:OD'
-0.187064 O b'+1:lemma:g/l'
-0.187064 O b'+1:word:g/L'
-0.189574 O b'lemma:2h'
-0.189574 O b'-1:lemma:additional'
-0.189574 O b'word[:2]:2h'
-0.189574 O b'word:2h'
-0.189574 O b'-1:word:additional'
-0.189977 O b'-1:postag:-LRB-'
-0.192454 O b'+1:lemma:.'
-0.192454 O b'+1:postag:.'
-0.192454 O b'+1:word:.'
-0.198550 Gtype b'+2:lemma:,'
-0.198550 Gtype b'+2:postag:,'
-0.199077 Supp b'+2:lemma:-rrb-'
-0.209538 Supp b'+2:postag:-RRB-'
-0.216556 O b'lemma:methanol'
-0.216556 O b'word:methanol'
-0.216556 O b'-2:lemma:dissolve'
-0.222399 O b'+2:lemma:b'
-0.230362 Supp b'-2:postag:JJ'
-0.230473 O b'-1:lemma:dissolve'
-0.230473 O b'+1:lemma:methanol'
-0.230473 O b'-1:word:dissolved'
-0.230473 O b'+1:word:methanol'
-0.246071 Temp b'postag:NN'
-0.253325 O b'-1:lemma:grow'
-0.262317 Temp b'isLower'
-0.263799 O b'word[:2]:gl'
-0.265145 OD b'isLower'
-0.271959 O b'-2:lemma:50'
-0.277605 O b'-2:postag:RB'
-0.294527 O b'+2:lemma:rifampicin'
-0.296283 Supp b'isUpper'
-0.303601 O b'+1:postag:VBG'
-0.305609 Gtype b'postag:NNP'
-0.306835 O b'-2:postag:DT'
-0.307435 O b'word[:2]:ri'
-0.308156 O b'-1:lemma:co2'
-0.308156 O b'-1:word:CO2'
-0.308934 Med b'+1:postag:NN'
-0.312777 O b'-1:postag:IN'
-0.331437 O b'-2:lemma:a'
-0.342737 O b'word[:1]:K'
-0.345243 Anti b'+1:lemma:anti-fur'
-0.345243 Anti b'+1:word:anti-Fur'
-0.357708 Agit b'hUpper'
-0.357708 Agit b'hLower'
-0.360267 Supp b'word[:2]:an'
-0.374118 O b'+1:postag:NNS'
-0.375266 O b'-2:postag:VBG'
-0.382105 Phase b'postag:JJ'
-0.396801 Med b'symb'
-0.399800 O b'word[:1]:g'
-0.401641 Med b'-2:postag:NNP'
-0.404890 OD b'+1:postag:NN'
-0.415691 Phase b'hUpper'
-0.415691 Phase b'hLower'
-0.419849 O b'lemma:rifampicin'
-0.419849 O b'word:rifampicin'
-0.451527 O b'word[:1]:N'
-0.494122 Supp b'+2:lemma:2'
-0.511421 OD b'+2:postag:NN'
-0.530842 O b'-2:lemma:supplement'
-0.535189 O b'lemma:wt'
-0.537729 O b'word:cells'
-0.557817 OD b'+2:postag:CD'
-0.562708 Med b'-1:postag:NN'
-0.567600 O b'-2:lemma::'
-0.588931 O b'+2:postag:-RRB-'
-0.588979 Air b'isLower'
-0.648905 O b'postag:RB'
-0.650990 O b'+2:lemma:mid-log'
-0.653045 O b'-2:lemma:rpob'
-0.658979 Air b'-1:postag:JJ'
-0.664709 Supp b'+2:postag:NN'
-0.715070 O b'-1:postag:VBG'
-0.728681 Med b'-2:postag:VBN'
-0.764375 O b'+1:lemma:in'
-0.764375 O b'+1:word:in'
-0.781477 O b'word[:1]:0'
-0.789024 OD b'isNumber'
-0.793942 O b'lemma:mid-log'
-0.793942 O b'word:mid-log'
-0.808561 O b'word[:1]:\xce\x94'
-0.808585 Med b'+1:postag:IN'
-0.828064 O b'+1:lemma:at'
-0.828064 O b'+1:word:at'
-0.852882 O b'+1:postag:IN'
-0.863301 O b'word[:1]:P'
-0.887183 Gversion b'isLower'
-0.892329 O b'-2:lemma:rifampicin'
-0.892363 O b'word[:2]:me'
-0.923638 O b'+1:lemma:2'
-0.923638 O b'+1:word:2'
-0.926320 O b'-1:lemma:2'
-0.926320 O b'-1:word:2'
-0.953731 Gtype b'isUpper'
-0.983394 Gtype b'word[:1]:C'
-0.991482 O b'word[:1]:d'
-1.050165 O b'-2:lemma:phase'
-1.081955 Supp b'symb'
-1.100341 Anti b'postag:NNP'
-1.101751 O b'+1:lemma:1'
-1.101751 O b'+1:word:1'
-1.313954 O b'-1:postag::'
-1.342158 Technique b'postag:NN'
-1.383899 O b'word[:2]:Ch'
-1.392025 Supp b'postag:JJ'
-1.498805 Air b'postag:NN'
-1.634162 O b'-1:lemma::'
-1.634162 O b'-1:word::'
-2.037586 O b'-1:lemma:_'
-2.037586 O b'-1:word:_'
-2.050665 Supp b'+2:postag:CD'
-3.447085 OD b'word[:1]:-'
********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.005890787510878062, 'c2': 0.06901405430753309}
best CV score:0.800439058983579
model size: 0.13M
Flat F1: 0.7875530357193007
precision recall f1-score support
OD 1.000 0.405 0.577 37
pH 1.000 1.000 1.000 12
Technique 0.952 0.909 0.930 22
Med 0.889 0.842 0.865 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.754 0.742 0.748 62
Anti 1.000 0.444 0.615 9
Strain 1.000 1.000 1.000 1
Gtype 0.862 0.764 0.810 106
Substrain 0.000 0.000 0.000 1
Supp 0.865 0.662 0.750 136
Gversion 0.000 0.000 0.000 0
avg / total 0.875 0.733 0.788 480
Top likely transitions:
OD -> OD 5.295300
Med -> Med 4.817027
Air -> Air 4.541687
Temp -> Temp 4.477980
Anti -> Anti 4.403961
Agit -> Agit 4.189406
O -> O 4.155711
Gversion -> Gversion 3.926573
Phase -> Phase 3.764540
Gtype -> Gtype 3.728193
Supp -> Supp 3.500024
Technique -> Technique 2.523454
pH -> pH 2.120930
O -> Supp 1.644804
Substrain -> Gtype 1.553365
Gtype -> Supp 1.549696
Air -> O 1.305073
O -> Gtype 1.048094
Technique -> Air 1.030180
O -> Technique 0.933161
O -> Temp 0.764897
Gtype -> pH 0.723788
Med -> O 0.647341
Gtype -> Air 0.646357
O -> Anti 0.639501
OD -> Phase 0.283925
O -> Strain 0.281301
Phase -> O 0.224883
O -> Gversion 0.199014
O -> Vess 0.165133
O -> pH 0.164399
Supp -> O 0.147494
Temp -> O 0.060602
O -> Med 0.024988
pH -> Vess -0.000034
Gversion -> Strain -0.000143
Agit -> Anti -0.005756
Strain -> Gversion -0.006189
Vess -> O -0.008273
Vess -> Technique -0.009171
Substrain -> Phase -0.009186
Temp -> Substrain -0.014198
Med -> Strain -0.014524
Vess -> Med -0.015908
Med -> Agit -0.017755
Agit -> Gversion -0.019478
Med -> Vess -0.019502
Gversion -> Agit -0.021787
Substrain -> Med -0.022015
pH -> Agit -0.023370
Top unlikely transitions:
Gversion -> Gtype -0.449091
Anti -> Supp -0.469341
Technique -> O -0.471772
Air -> Gtype -0.471801
OD -> Anti -0.472176
Med -> Air -0.493933
Gversion -> Supp -0.505303
Air -> Temp -0.514758
Anti -> Gtype -0.526422
Technique -> Gversion -0.527475
OD -> Supp -0.540365
Gversion -> Air -0.543215
Gversion -> Technique -0.557808
OD -> Technique -0.562317
Anti -> OD -0.572231
Air -> Supp -0.574414
Gtype -> Phase -0.589533
Supp -> pH -0.634245
Air -> Med -0.635679
OD -> Med -0.653630
O -> Air -0.677094
Supp -> Phase -0.687344
Gtype -> Technique -0.694977
Technique -> Supp -0.714796
OD -> Temp -0.724798
Supp -> Temp -0.735059
Gtype -> Gversion -0.783076
Temp -> Med -0.785893
Phase -> Technique -0.787474
OD -> Gtype -0.788802
Gtype -> Med -0.799774
Air -> OD -0.822597
Supp -> Anti -0.844375
Supp -> Air -0.856507
OD -> O -0.872397
Supp -> OD -0.885971
Supp -> Gversion -0.902285
Gtype -> Anti -0.919969
Gtype -> OD -0.936809
Agit -> O -0.963196
Supp -> Gtype -0.973061
Supp -> Technique -0.989494
OD -> Air -1.170906
Technique -> OD -1.195273
Technique -> Gtype -1.215623
Substrain -> O -1.241298
Supp -> Med -1.319744
Technique -> pH -1.339939
Med -> Supp -1.354155
Phase -> OD -1.507830
Top positive:
6.001404 O b'lemma:_'
5.108046 O b'lemma:1'
4.607885 Air b'lemma:anaerobic'
4.487322 O b'lemma:2'
4.403039 Strain b'lemma:k-12'
4.353066 Technique b'lemma:ChIP-exo'
4.261832 Technique b'lemma:chipseq'
4.120645 Air b'lemma:aerobic'
4.097041 Supp b'lemma:Iron'
4.006566 O b'lemma:rpob'
3.971422 Supp b'lemma:nh4cl'
3.946783 Supp b'lemma:pq'
3.920412 Supp b'lemma:glucose'
3.913288 O b'postag:IN'
3.777202 O b'lemma:3'
3.702196 Gtype b'lemma:arca8myc'
3.696052 O b'lemma:rep1'
3.694299 Gtype b'lemma:wt'
3.684859 Phase b'lemma:stationary'
3.619890 Gtype b'lemma:flag-tag'
3.619890 Gtype b'-1:lemma:c-terminal'
3.561287 Gtype b'lemma:\xce\xb4cra'
3.436909 Substrain b'lemma:mg1655'
3.399977 Gtype b'-1:lemma:\xe2\x88\x86'
3.390171 O b'lemma:rep2'
3.367223 Supp b'lemma:acetate'
3.313496 Supp b'+1:lemma:\xc2\xb5m'
3.310220 Phase b'lemma:mid-log'
3.304995 Gversion b'lemma:asm584v2'
3.270028 O b'lemma:Cra'
3.220110 Supp b'lemma:no3'
3.184611 O b'lemma:b'
3.183606 O b'postag::'
3.173832 Supp b'lemma:nitrate'
3.172458 Air b'-1:lemma:ChIP-Seq'
3.117942 O b'lemma:a'
3.086615 Gtype b'lemma:delta-arca'
3.060393 Med b'lemma:LB'
3.052585 O b'lemma:.'
3.052585 O b'postag:.'
3.040998 O b'-1:lemma:tag'
3.039527 Air b'lemma:Aerobic'
3.034395 O b'lemma:rep3'
3.030474 Med b'lemma:lb'
3.013829 Supp b'lemma:Fe'
2.993252 Technique b'lemma:rna-seq'
2.946753 Supp b'lemma:dpd'
2.934731 Gtype b'lemma:fnr8myc'
2.888684 Technique b'lemma:chip-seq'
2.845234 Supp b'lemma:fructose'
2.833231 OD b'lemma:od600'
2.824550 O b'-1:lemma:Aerobic'
2.820328 Gtype b'lemma:\xe2\x88\x86'
2.817149 O b'lemma:\xcf\x8332'
2.807553 O b'-1:lemma:ChIP-exo'
2.800013 O b'+1:postag:RB'
2.767317 Supp b'+1:lemma:1'
2.763849 Technique b'lemma:rnaseq'
2.736019 Anti b'lemma:none'
2.735616 Med b'lemma:MOPS'
2.704042 O b'postag:VBN'
2.692426 Anti b'lemma:seqa'
2.674687 O b'lemma:CEL'
2.641978 Med b'+1:lemma:0.4'
2.538323 O b'lemma:Custom'
2.532184 OD b'lemma:od450'
2.528303 Gtype b'lemma:type'
2.515549 Gtype b'+1:lemma:type'
2.508151 O b'lemma:-'
2.506162 Gtype b'lemma:delta-fnr'
2.494354 pH b'lemma:ph5'
2.494354 pH b'+1:lemma:.5'
2.483580 Gversion b'lemma:nc'
2.472529 Supp b'lemma:rifampicin'
2.439115 Air b'postag:RB'
2.437715 Supp b'+1:lemma:Deficient'
2.432663 Gtype b'lemma:nsrr'
2.426483 O b'lemma:affyexp'
2.426224 Vess b'lemma:flask'
2.426224 Vess b'-1:lemma:warm'
2.409664 Gtype b'lemma:\xce\xb4fur'
2.401638 Supp b'-1:lemma:Cra'
2.397836 Gversion b'lemma:chip-seq'
2.376616 Gtype b'+1:lemma:with'
2.376328 Supp b'+1:lemma:2'
2.352749 O b'+1:lemma:od600'
2.350360 Temp b'lemma:\xc2\xb0c'
2.340801 Supp b'+1:lemma:_'
2.340243 Supp b'lemma:arginine'
2.296460 O b'lemma:chip-arca'
2.263142 O b'-1:lemma:glucose'
2.259312 Gtype b'lemma:wild-type'
2.256120 O b'lemma:with'
2.252353 Gversion b'lemma:.2'
2.252353 Gversion b'-1:lemma:u00096'
2.250177 Gtype b'lemma:WT'
2.244062 O b'lemma:s'
2.242532 Technique b'lemma:ChIP-Seq'
2.236704 Gtype b'-1:lemma:_'
2.235688 O b'lemma:argr'
2.232314 Gversion b'lemma:u00096'
2.232314 Gversion b'+1:lemma:.2'
2.227051 Med b'lemma:m63'
2.196925 Gversion b'lemma:000913'
2.195820 O b'-1:lemma:stpa'
2.190615 O b'lemma:oxyr'
2.167202 O b'-1:lemma:anaerobic'
2.153126 Gtype b'-1:lemma:ptac'
2.138902 pH b'+1:postag:CD'
2.137252 Strain b'+1:lemma:substr'
2.135331 Gtype b'lemma:\xce\xb4soxs'
2.132696 Technique b'-1:lemma:IP'
2.130445 O b'+1:lemma:pq'
2.121844 O b'lemma:or'
2.120627 Med b'+1:lemma:2.0'
2.119248 O b'-1:lemma:0.3-0.35'
2.102124 Anti b'lemma:anti-myc'
2.099119 Gtype b'+1:lemma:pq'
2.097053 Gversion b'-1:lemma:nc'
2.095915 O b'postag:SYM'
2.087696 Gtype b'+1:lemma:flagtag'
2.068537 Phase b'lemma:phase'
2.039522 O b'-1:lemma:lb'
2.034656 O b'lemma:ompr'
2.020219 Supp b'lemma:nacl'
2.011236 O b'+1:lemma:anti-fur'
2.002622 O b'lemma:purr'
1.989136 Gtype b'lemma:ptac'
1.986425 O b'lemma:Lrp'
1.986041 Air b'lemma:anaerobically'
1.984872 Technique b'postag:NNP'
1.982619 Supp b'lemma:Leu'
1.963147 Air b'-1:lemma:_'
1.960508 Air b'-1:lemma:-'
1.951971 O b'lemma:chip'
1.946660 Gtype b'lemma:deltaseqa'
1.946660 Gtype b'-1:lemma:old'
1.941357 Technique b'-1:lemma:chip-exo'
1.929969 Anti b'+1:lemma:antibody'
1.926992 Phase b'-1:lemma:mid-log'
1.917242 Gtype b'-1:lemma:rpob'
1.913616 Substrain b'+1:lemma:phtpg'
1.907553 Temp b'-1:lemma:37'
1.902343 O b'-1:lemma:type'
1.899563 Gtype b'lemma:\xce\xb4ompr'
1.896818 Gtype b'+1:lemma:aerobic'
1.896130 Supp b'lemma:iptg'
1.891122 Air b'lemma:Anaerobic'
1.888582 Gtype b'lemma:pk4854'
1.885003 Temp b'lemma:43'
1.884992 Med b'+1:lemma:+'
1.883373 Gtype b'+1:lemma:ph5'
1.883065 Air b'-1:postag::'
1.880978 O b'postag:DT'
1.869735 O b'postag:CC'
1.867667 Supp b'-1:lemma:with'
1.859135 Supp b'-1:lemma:\xc2\xb5m'
1.850190 Temp b'+1:lemma:\xc2\xb0c'
1.849895 Vess b'-1:postag:VBN'
1.830649 O b'+1:lemma:43'
1.826705 Supp b'+1:lemma:respiratory'
1.826425 Med b'postag:NNP'
1.818906 O b'lemma:culture'
1.815650 Med b'-1:lemma:ml'
1.814335 Gtype b'-1:lemma:nsrr'
1.807866 Technique b'-1:lemma:input'
1.801111 pH b'lemma:.5'
1.801111 pH b'-1:lemma:ph5'
1.799448 Supp b'lemma:Adenine'
1.798437 Air b'+1:lemma:at'
1.797384 O b'lemma:genotype/variation'
1.795853 Temp b'-1:lemma:43'
1.792969 O b'lemma:Fur'
1.792070 Technique b'-1:lemma:_'
1.790333 O b'+1:lemma:chip-seq'
1.785178 Gversion b'+1:lemma:000913'
1.777548 Anti b'lemma:anti-rpos'
1.772627 Supp b'+1:lemma:hour'
1.771735 O b'lemma:chip-fnr'
1.766973 Technique b'+1:lemma:chip-exo'
1.765244 Supp b'lemma:methanol'
1.753576 OD b'+1:lemma:stationary'
1.735182 O b'lemma:for'
1.733859 Vess b'+1:lemma:at'
1.726551 O b'lemma:pt7'
1.711211 O b'postag:VBG'
1.709643 O b'-1:lemma:\xc2\xb0c'
1.699026 Temp b'lemma:37'
1.698654 Gtype b'+1:lemma:,'
1.698654 Gtype b'+1:postag:,'
1.691558 Gtype b'+1:lemma:_'
1.691282 O b'lemma:soxs'
1.691282 O b'lemma:soxr'
1.691054 Supp b'lemma:20'
1.680349 Gversion b'postag:CD'
1.680242 O b'+1:lemma:mid-log'
1.676394 O b'lemma:at'
1.671037 Supp b'-1:lemma:+'
1.657960 Phase b'+1:lemma:for'
1.657799 Technique b'-1:lemma:rna-seq'
Top negative:
-0.138337 OD b'postag:IN'
-0.140202 O b'lemma:n2'
-0.141199 Gtype b'-1:lemma:-lrb-'
-0.141513 Med b'postag:-LRB-'
-0.142816 O b'lemma:aerobically'
-0.148531 Technique b'+1:postag:JJ'
-0.153818 Gtype b'postag:VBG'
-0.163124 Supp b'postag:CD'
-0.169140 O b'-1:lemma:of'
-0.172938 O b'+1:lemma:2.0'
-0.175379 Technique b'-1:lemma::'
-0.175946 Supp b'-1:lemma:%'
-0.176380 O b'-1:postag:-LRB-'
-0.177032 OD b'+1:postag:CD'
-0.186317 O b'+1:lemma:pahse'
-0.188005 OD b'+1:postag:NNS'
-0.189604 Med b'+1:lemma:m9'
-0.194248 Gtype b'postag:CD'
-0.196879 Med b'-1:lemma:MOPS'
-0.200307 O b'+1:lemma:purify'
-0.202100 Med b'-1:postag:NN'
-0.209858 O b'-1:lemma:delta'
-0.209949 O b'lemma:10'
-0.214403 OD b'+1:lemma:0.4'
-0.215059 O b'lemma:co2'
-0.217010 Phase b'postag:JJ'
-0.220806 Med b'postag:CD'
-0.221059 Gtype b'-1:lemma:,'
-0.221059 Gtype b'-1:postag:,'
-0.227070 O b'lemma:mg/ml'
-0.227070 O b'-1:lemma:150'
-0.228793 O b'-1:lemma:grow'
-0.241460 Supp b'lemma:and'
-0.241888 O b'lemma:medium'
-0.246141 Gtype b'+1:lemma:2'
-0.251300 Gtype b'postag:NNS'
-0.251694 O b'+1:lemma:sample'
-0.253709 Supp b'+1:postag:IN'
-0.255442 Gtype b'-1:lemma:-'
-0.263468 O b'+1:postag:-RRB-'
-0.271432 Gtype b'+1:postag:NNS'
-0.278350 Air b'postag:CD'
-0.280151 O b'postag:RB'
-0.286504 O b'-1:lemma:purify'
-0.287229 Supp b'-1:postag:VBG'
-0.291292 O b'+1:lemma:%'
-0.295935 OD b'+1:lemma:in'
-0.296047 O b'-1:lemma:rna'
-0.296196 Gtype b'lemma:ompr'
-0.297998 O b'+1:lemma:phase'
-0.299404 Phase b'-1:lemma:at'
-0.304065 O b'lemma:30'
-0.305817 O b'+1:lemma:-lcb-'
-0.308356 O b'-1:lemma:20'
-0.308695 O b'+1:lemma:mg1655'
-0.311346 O b'+1:lemma:delta'
-0.313799 O b'-1:postag:VBP'
-0.315020 O b'lemma:e.'
-0.315230 O b'-1:lemma:e.'
-0.319138 Gtype b'+1:lemma:-lrb-'
-0.321739 Anti b'+1:postag:JJ'
-0.322662 O b'-1:lemma:30'
-0.329200 O b'lemma:nacl'
-0.329442 Gtype b'+1:lemma:cra'
-0.332012 O b'-1:lemma:o2'
-0.332558 O b'+1:lemma:from'
-0.333621 Gtype b'+1:lemma:a'
-0.335398 O b'+1:lemma:cell'
-0.339984 O b'lemma:pahse'
-0.350806 O b'-1:lemma:fresh'
-0.364120 O b'+1:lemma:dissolve'
-0.372799 O b'+1:lemma:minimal'
-0.374219 Supp b'+1:postag:VBN'
-0.377677 Gtype b'-1:postag:CD'
-0.390295 O b'+1:postag:IN'
-0.390779 Med b'-1:postag:CD'
-0.399008 Technique b'-1:postag::'
-0.401291 O b'+1:lemma:strain'
-0.405578 O b'-1:lemma:affinity'
-0.411039 O b'lemma:minimal'
-0.413767 O b'lemma:8'
-0.418867 O b'-1:lemma:rifampicin'
-0.420435 Med b'+1:postag:NNS'
-0.421888 O b'-1:lemma:iptg'
-0.426304 O b'-1:lemma:0.1'
-0.427748 O b'-1:lemma:um'
-0.427748 O b'+1:lemma:paraquat'
-0.432025 Supp b'+1:lemma:glucose'
-0.439327 OD b'+1:postag:CC'
-0.440292 Gtype b'+1:lemma:b'
-0.444597 Med b'+1:postag:NN'
-0.449089 O b'+1:lemma:shake'
-0.454608 O b'-1:lemma:from'
-0.468184 O b'lemma:of'
-0.472171 O b'lemma:\xc2\xb0c'
-0.475747 O b'lemma:phase'
-0.483124 O b'-1:lemma:mid-log'
-0.485719 O b'+1:lemma:until'
-0.487110 Temp b'postag:JJ'
-0.495708 O b'-1:lemma:chip-exo'
-0.495761 O b'-1:lemma:cra'
-0.499278 Temp b'+1:lemma:to'
-0.499278 Temp b'+1:postag:TO'
-0.502976 O b'+1:lemma:rep1'
-0.516570 O b'lemma:150'
-0.516570 O b'+1:lemma:mg/ml'
-0.517552 OD b'+1:lemma:and'
-0.526042 O b'lemma:dissolve'
-0.528223 O b'lemma:m63'
-0.532678 O b'lemma:glucose'
-0.539809 O b'-1:lemma:mm'
-0.555116 O b'+1:lemma:Aerobic'
-0.560647 Supp b'postag:CC'
-0.568048 O b'+1:lemma:b'
-0.574891 O b'+1:lemma:300'
-0.583571 O b'+1:lemma:c'
-0.591151 O b'-1:lemma:g/l'
-0.591330 Temp b'-1:lemma:\xc2\xb0c'
-0.600038 O b'+1:postag:NNS'
-0.602099 OD b'postag:JJ'
-0.605582 pH b'postag:NN'
-0.607566 OD b'+1:lemma:mid-log'
-0.610267 O b'lemma:lb'
-0.612280 O b'lemma:purify'
-0.617785 Gtype b'lemma:_'
-0.625835 O b'+1:lemma:0.4'
-0.638498 O b'+1:lemma:arginine'
-0.643623 OD b'lemma:-lrb-'
-0.644126 Gtype b'-1:postag:SYM'
-0.658568 Temp b'postag:NN'
-0.658731 Gtype b'+1:lemma:\xe2\x88\x86'
-0.661085 O b'+1:lemma:fecl2'
-0.669040 O b'lemma:mg1655'
-0.672673 O b'lemma:dpd'
-0.698443 Supp b'+1:lemma:rifampicin'
-0.713908 O b'-1:lemma:until'
-0.714588 O b'-1:lemma:od600'
-0.721807 Gtype b'-1:postag:DT'
-0.723775 Gtype b'lemma:delta'
-0.727392 OD b'postag:-LRB-'
-0.754913 O b'-1:lemma:1'
-0.773161 OD b'+1:postag:NN'
-0.785912 Anti b'+1:lemma:anti-fur'
-0.798212 O b'+1:lemma:0.3'
-0.806842 O b'lemma:anaerobically'
-0.817840 O b'lemma:od600'
-0.828895 Phase b'-1:postag:JJ'
-0.832410 O b'+1:lemma:in'
-0.838317 Med b'+1:postag:IN'
-0.843570 O b'+1:lemma:\xc2\xb0c'
-0.853228 O b'+1:lemma:at'
-0.895416 Air b'-1:postag:JJ'
-0.900736 O b'lemma:media'
-0.902081 O b'-1:lemma:\xe2\x88\x86'
-0.906592 O b'lemma:0.3'
-0.918504 O b'-1:lemma:0.2'
-0.931732 O b'+1:postag:VBG'
-0.943156 O b'lemma:0.1'
-0.954406 O b'-1:lemma:dissolve'
-0.954406 O b'+1:lemma:methanol'
-0.966339 Supp b'+1:lemma:acetate'
-0.995930 O b'lemma:fecl2'
-1.003164 O b'lemma:20'
-1.026277 O b'lemma:mid-log'
-1.053295 O b'-1:lemma:ompr'
-1.054899 O b'lemma:anaerobic'
-1.057596 O b'lemma:2h'
-1.057596 O b'-1:lemma:additional'
-1.080282 O b'+1:lemma:g/l'
-1.082820 O b'lemma:0.2'
-1.104495 O b'-1:lemma:~'
-1.121867 O b'-1:lemma:ml'
-1.127613 O b'lemma:k-12'
-1.175804 O b'lemma:\xe2\x88\x86'
-1.176063 O b'lemma:\xce\xb4fur'
-1.192468 O b'+1:lemma:supplement'
-1.233751 O b'-1:postag:VBG'
-1.236448 O b'postag:VBP'
-1.249871 O b'-1:lemma:sample'
-1.284753 O b'-1:lemma:rpob'
-1.294533 O b'-1:lemma:co2'
-1.310574 O b'lemma:37'
-1.338283 O b'-1:postag::'
-1.367124 Anti b'postag:NNP'
-1.397494 O b'-1:lemma:37'
-1.398009 Supp b'postag:JJ'
-1.437506 Air b'+1:postag:JJ'
-1.540588 O b'lemma:wt'
-1.569408 O b'-1:lemma:2'
-1.577711 O b'+1:lemma:+'
-1.615554 O b'+1:lemma:hour'
-1.616588 O b'lemma:methanol'
-1.673269 O b'lemma:rifampicin'
-1.677284 O b'-1:lemma:IP'
-1.688519 O b'-1:lemma:nsrr'
-1.716711 Air b'postag:NN'
-1.806551 O b'+1:lemma:2'
-1.992901 O b'+1:lemma:1'
-2.768062 O b'-1:lemma:_'
-2.825339 O b'-1:lemma::'