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| 1 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v1 | 1 | + |
| 2 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v1 --S1 | 2 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v9 > ../outputs/Run1_v1.txt |
| 3 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v1 --S2 | 3 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v9 --S1 > ../outputs/Run2_v1.txt |
| 4 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v1 --S1 --S2 | 4 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v9 --S2 > ../outputs/Run3_v1.txt |
| 5 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v1 --S3 | 5 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v9 --S1 --S2 > ../outputs/Run4_v1.txt |
| 6 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v1 --S1 --S3 | 6 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v9 --S3 > ../outputs/Run5_v1.txt |
| 7 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v1 --S2 --S3 | 7 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v9 --S1 --S3 > ../outputs/Run6_v1.txt |
| 8 | -python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v1 --S1 --S2 --S3 | 8 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v9 --S2 --S3 > ../outputs/Run7_v1.txt |
| 9 | +python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v9 --S1 --S2 --S3 > ../outputs/Run8_v1.txt | ||
| 10 | + | ||
| 11 | + | ... | ... |
CRF/bin/grid_v2.sh
0 → 100644
| 1 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run1 --version _v2 > ../outputs/Run1_v2.txt | ||
| 2 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run2 --version _v2 --S1 > ../outputs/Run2_v2.txt | ||
| 3 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run3 --version _v2 --S2 > ../outputs/Run3_v2.txt | ||
| 4 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run4 --version _v2 --S1 --S2 > ../outputs/Run4_v2.txt | ||
| 5 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run5 --version _v2 --S3 > ../outputs/Run5_v2.txt | ||
| 6 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run6 --version _v2 --S1 --S3 > ../outputs/Run6_v2.txt | ||
| 7 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run7 --version _v2 --S2 --S3 > ../outputs/Run7_v2.txt | ||
| 8 | +python3 training_validation_v10.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70_v4.txt --testFile test-data-set-30_v4.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run8 --version _v2 --S1 --S2 --S3 > ../outputs/Run8_v2.txt | ||
| 9 | + | ||
| 10 | + |
CRF/bin/training_validation_v10.py
0 → 100644
| 1 | +# -*- coding: UTF-8 -*- | ||
| 2 | + | ||
| 3 | +import os | ||
| 4 | +from itertools import chain | ||
| 5 | +from optparse import OptionParser | ||
| 6 | +from time import time | ||
| 7 | +from collections import Counter | ||
| 8 | +import re | ||
| 9 | + | ||
| 10 | +import nltk | ||
| 11 | +import sklearn | ||
| 12 | +import scipy.stats | ||
| 13 | +import sys | ||
| 14 | + | ||
| 15 | +from sklearn.externals import joblib | ||
| 16 | +from sklearn.metrics import make_scorer | ||
| 17 | +from sklearn.cross_validation import cross_val_score | ||
| 18 | +from sklearn.grid_search import RandomizedSearchCV | ||
| 19 | + | ||
| 20 | +import sklearn_crfsuite | ||
| 21 | +from sklearn_crfsuite import scorers | ||
| 22 | +from sklearn_crfsuite import metrics | ||
| 23 | + | ||
| 24 | +from pandas import DataFrame as DF | ||
| 25 | +from nltk.corpus import stopwords | ||
| 26 | + | ||
| 27 | + | ||
| 28 | +# Objective | ||
| 29 | +# Training and evaluation of CRFs with sklearn-crfsuite. | ||
| 30 | +# | ||
| 31 | +# Input parameters | ||
| 32 | +# --inputPath=PATH Path of training and test data set | ||
| 33 | +# --trainingFile File with training data set | ||
| 34 | +# --testFile File with test data set | ||
| 35 | +# --outputPath=PATH Output path to place output files | ||
| 36 | +# --nameGrid Number of run | ||
| 37 | +# --version Version Report | ||
| 38 | + | ||
| 39 | +# Output | ||
| 40 | +# 1) Best model | ||
| 41 | +# 2) Report | ||
| 42 | + | ||
| 43 | +# Examples | ||
| 44 | +# python training_validation_v10.py | ||
| 45 | +# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 46 | +# --trainingFile training-data-set-70.txt | ||
| 47 | +# --testFile test-data-set-30.txt | ||
| 48 | +# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ | ||
| 49 | +# --version _v1 | ||
| 50 | +# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3 | ||
| 51 | + | ||
| 52 | +################################################################## | ||
| 53 | +# FEATURES # | ||
| 54 | +################################################################## | ||
| 55 | + | ||
| 56 | +#================== COMPLETE WORD FEATURES ======================# | ||
| 57 | + | ||
| 58 | +def isGreek(word): | ||
| 59 | + ## Complete word are greek letters | ||
| 60 | + alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω', | ||
| 61 | + 'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω'] | ||
| 62 | + if word in alphabet: | ||
| 63 | + return True | ||
| 64 | + else: | ||
| 65 | + return False | ||
| 66 | + | ||
| 67 | +#================ INNER OF THE WORD FEATURES ====================# | ||
| 68 | + | ||
| 69 | +def hNumber(word): | ||
| 70 | + ## Al leats has one greek letter | ||
| 71 | + for l in word: | ||
| 72 | + if l.isdigit(): | ||
| 73 | + return True | ||
| 74 | + return False | ||
| 75 | + | ||
| 76 | +def symb(word): | ||
| 77 | + n=0 | ||
| 78 | + ## At least a not alphanumeric character | ||
| 79 | + for l in word: | ||
| 80 | + if l.isdigit(): n = n+1 | ||
| 81 | + if l.isalpha(): n = n+1 | ||
| 82 | + #Exclude Greek letters | ||
| 83 | + if isGreek(l): n = n+1 | ||
| 84 | + | ||
| 85 | + if n<len(word): return True | ||
| 86 | + else: return False | ||
| 87 | + | ||
| 88 | +def hUpper(word): | ||
| 89 | + ## At least an upper letter | ||
| 90 | + for l in word: | ||
| 91 | + if l.isupper(): return True | ||
| 92 | + return False | ||
| 93 | + | ||
| 94 | +def hLower(word): | ||
| 95 | + ## At least a lower letter | ||
| 96 | + for l in word: | ||
| 97 | + if l.islower(): return True | ||
| 98 | + return False | ||
| 99 | + | ||
| 100 | +def hGreek(word): | ||
| 101 | + ## At least a greek letter | ||
| 102 | + for l in word: | ||
| 103 | + if isGreek(l): return True | ||
| 104 | + return False | ||
| 105 | + | ||
| 106 | +#============================FEATURES===========================# | ||
| 107 | + | ||
| 108 | +def word2features(sent, i, S1, S2, S3): | ||
| 109 | + ## Getting word features | ||
| 110 | + | ||
| 111 | + ## Saving CoreNLP annotations | ||
| 112 | + listElem = sent[i].split('|') | ||
| 113 | + word = listElem[0] | ||
| 114 | + lemma = listElem[1] | ||
| 115 | + postag = listElem[2] | ||
| 116 | + #ner = listElem[4] | ||
| 117 | + | ||
| 118 | + #=========================== G =============================# | ||
| 119 | + ## NAME LEVEL G | ||
| 120 | + ## FUTURE TYPE General features | ||
| 121 | + | ||
| 122 | + features = { | ||
| 123 | + ## basal features | ||
| 124 | + 'lemma': lemma, | ||
| 125 | + 'postag': postag | ||
| 126 | + } | ||
| 127 | + | ||
| 128 | + ## more tha one word in sentence | ||
| 129 | + if i > 0: | ||
| 130 | + ## Anterior word | ||
| 131 | + listElem = sent[i - 1].split('|') | ||
| 132 | + | ||
| 133 | + ## Saving CoreNLP annotations | ||
| 134 | + lemma0 = listElem[1] | ||
| 135 | + postag0 = listElem[2] | ||
| 136 | + features.update({ | ||
| 137 | + #LemaG anterior | ||
| 138 | + '-1:lemma': lemma0, | ||
| 139 | + #Postag anterior | ||
| 140 | + '-1:postag': postag0, | ||
| 141 | + }) | ||
| 142 | + | ||
| 143 | + ## is not the last word | ||
| 144 | + if i < len(sent) - 1: | ||
| 145 | + ## Posterior word | ||
| 146 | + listElem = sent[i + 1].split('|') | ||
| 147 | + ## Saving CoreNLP annotations | ||
| 148 | + lemma2 = listElem[1] | ||
| 149 | + postag2 = listElem[2] | ||
| 150 | + | ||
| 151 | + features.update({ | ||
| 152 | + #LemaG posterior | ||
| 153 | + '+1:lemma': lemma2, | ||
| 154 | + #Postag posterior | ||
| 155 | + '+1:postag': postag2, | ||
| 156 | + }) | ||
| 157 | + | ||
| 158 | + #=========================== S1 =============================# | ||
| 159 | + ## NAME LEVEL S1 | ||
| 160 | + ## FEATURE TYPE Inner word features | ||
| 161 | + | ||
| 162 | + if S1: | ||
| 163 | + #Add features | ||
| 164 | + features['hUpper']= hUpper(word) | ||
| 165 | + features['hLower']= hUpper(word) | ||
| 166 | + features['hGreek']= hGreek(word) | ||
| 167 | + features['symb']= symb(word) | ||
| 168 | + #word firstChar | ||
| 169 | + features['word[:1]']= word[:1] | ||
| 170 | + #word secondChar | ||
| 171 | + if len(word)>1: | ||
| 172 | + features['word[:2]']= word[:2] | ||
| 173 | + ''' | ||
| 174 | + #lemma and postag firstChar | ||
| 175 | + features['lemma[:1]']= lemma[:1] | ||
| 176 | + features['postag[:1]']= postag[:1] | ||
| 177 | + #lemma and postag secondChar | ||
| 178 | + if len(lemma)>1: | ||
| 179 | + features['lemma[:2]']= lemma[:2] | ||
| 180 | + if len(postag)>1: | ||
| 181 | + features['postag[:2]']= postag[:2] | ||
| 182 | + ''' | ||
| 183 | + #=========================== S2 =============================# | ||
| 184 | + ## NAME LEVEL S2 | ||
| 185 | + ## FEATURE TYPE Complete word features | ||
| 186 | + | ||
| 187 | + if S2: | ||
| 188 | + #Add features | ||
| 189 | + features['word']= word | ||
| 190 | + features['isUpper']= word.isupper() | ||
| 191 | + features['isLower']= word.islower() | ||
| 192 | + features['isGreek']= isGreek(word) | ||
| 193 | + features['isNumber']= word.isdigit() | ||
| 194 | + ## more tha one word in sentence | ||
| 195 | + if i > 0: | ||
| 196 | + ## Anterior word | ||
| 197 | + listElem = sent[i - 1].split('|') | ||
| 198 | + ## Saving CoreNLP annotations | ||
| 199 | + word0 = listElem[0] | ||
| 200 | + features['-1:word']= word0 | ||
| 201 | + | ||
| 202 | + ## is not the last word | ||
| 203 | + if i < len(sent)-1: | ||
| 204 | + listElem = sent[i + 1].split('|') | ||
| 205 | + ## Saving CoreNLP annotations | ||
| 206 | + word2 = listElem[0] | ||
| 207 | + ## Posterior word | ||
| 208 | + features['+1:word']= word2 | ||
| 209 | + | ||
| 210 | + #=========================== S3 =============================# | ||
| 211 | + ## NAME LEVEL S3 | ||
| 212 | + ## FEATURE TYPE Extended context features | ||
| 213 | + if S3: | ||
| 214 | + ## more tha two words in sentence | ||
| 215 | + if i > 1: | ||
| 216 | + ## two anterior lemma and postag | ||
| 217 | + listElem = sent[i - 2].split('|') | ||
| 218 | + ## Saving CoreNLP annotations | ||
| 219 | + lemma01 = listElem[1] | ||
| 220 | + postag01 = listElem[2] | ||
| 221 | + features['-2:lemma']= lemma01 | ||
| 222 | + features['-2:postag']= postag01 | ||
| 223 | + | ||
| 224 | + ## is not the penultimate word | ||
| 225 | + if i < len(sent) - 2: | ||
| 226 | + listElem = sent[i + 2].split('|') | ||
| 227 | + ## Saving CoreNLP annotations | ||
| 228 | + lemma02 = listElem[1] | ||
| 229 | + postag02 = listElem[2] | ||
| 230 | + ## two posterior lemma and postag | ||
| 231 | + features['+2:lemma']= lemma02 | ||
| 232 | + features['+2:postag']= postag02 | ||
| 233 | + | ||
| 234 | + return features | ||
| 235 | + | ||
| 236 | +def sent2features(sent, S1, S2, S3): | ||
| 237 | + ## Itering in sentence for each word and saving its features | ||
| 238 | + return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))] | ||
| 239 | + | ||
| 240 | +def sent2labels(sent): | ||
| 241 | + ## 3rd position by word is the label | ||
| 242 | + return [elem.split('|')[3] for elem in sent] | ||
| 243 | + | ||
| 244 | +def sent2tokens(sent): | ||
| 245 | + return [token for token, postag, label in sent] | ||
| 246 | + | ||
| 247 | +def print_transitions(trans_features, f): | ||
| 248 | + for (label_from, label_to), weight in trans_features: | ||
| 249 | + f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight)) | ||
| 250 | + | ||
| 251 | +def print_state_features(state_features, f): | ||
| 252 | + for (attr, label), weight in state_features: | ||
| 253 | + f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8"))) | ||
| 254 | + | ||
| 255 | + | ||
| 256 | +__author__ = 'egaytan' | ||
| 257 | + | ||
| 258 | +################################################################## | ||
| 259 | +# MAIN PROGRAM # | ||
| 260 | +################################################################## | ||
| 261 | + | ||
| 262 | +if __name__ == "__main__": | ||
| 263 | + ## Defining parameters | ||
| 264 | + parser = OptionParser() | ||
| 265 | + parser.add_option("--inputPath", dest="inputPath", help="Path of training data set", metavar="PATH") | ||
| 266 | + parser.add_option("--outputPath", dest="outputPath", help="Output path to place output files", metavar="PATH") | ||
| 267 | + parser.add_option("--trainingFile", dest="trainingFile", help="File with training data set", metavar="FILE") | ||
| 268 | + parser.add_option("--testFile", dest="testFile", help="File with test data set", metavar="FILE") | ||
| 269 | + parser.add_option("--Gridname", dest="Gridname", help="Report number run", metavar="FILE") | ||
| 270 | + parser.add_option("--version", dest="version", help="Report file", metavar="FILE") | ||
| 271 | + parser.add_option("--S1", dest="S1", help="Future Type", action="store_true", default=False) | ||
| 272 | + parser.add_option("--S2", dest="S2", help="Future Type", action="store_true", default=False) | ||
| 273 | + parser.add_option("--S3", dest="S3", help="Future Type", action="store_true", default=False) | ||
| 274 | + parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words", action="store_true", default=False) | ||
| 275 | + parser.add_option("--excludeSymbols", dest="excludeSymbols", help="Exclude punctuation marks", action="store_true", default=False) | ||
| 276 | + | ||
| 277 | + | ||
| 278 | + (options, args) = parser.parse_args() | ||
| 279 | + if len(args) > 0: | ||
| 280 | + parser.error("Any parameter given.") | ||
| 281 | + sys.exit(1) | ||
| 282 | + | ||
| 283 | + print('-------------------------------- PARAMETERS --------------------------------') | ||
| 284 | + print("Path of training data set: " + options.inputPath) | ||
| 285 | + print("File with training data set: " + str(options.trainingFile)) | ||
| 286 | + print("Path of test data set: " + options.inputPath) | ||
| 287 | + print("File with test data set: " + str(options.testFile)) | ||
| 288 | + print("Exclude stop words: " + str(options.excludeStopWords)) | ||
| 289 | + print("Levels: " + str(options.S1) + " " + str(options.S2)) | ||
| 290 | + print("Report file: " + str(options.version)) | ||
| 291 | + | ||
| 292 | + | ||
| 293 | + symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{', | ||
| 294 | + '}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...'] | ||
| 295 | + print("Exclude symbols: " + str(options.excludeSymbols)) | ||
| 296 | + | ||
| 297 | + print('-------------------------------- PROCESSING --------------------------------') | ||
| 298 | + print('Reading corpus...') | ||
| 299 | + t0 = time() | ||
| 300 | + | ||
| 301 | + sentencesTrainingData = [] | ||
| 302 | + sentencesTestData = [] | ||
| 303 | + | ||
| 304 | + stopwords = [word for word in stopwords.words('english')] | ||
| 305 | + | ||
| 306 | + with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile: | ||
| 307 | + for line in iFile.readlines(): | ||
| 308 | + listLine = [] | ||
| 309 | + line = line.strip('\n') | ||
| 310 | + for token in line.split(): | ||
| 311 | + if options.excludeStopWords: | ||
| 312 | + listToken = token.split('|') | ||
| 313 | + lemma = listToken[1] | ||
| 314 | + if lemma in stopwords: | ||
| 315 | + continue | ||
| 316 | + if options.excludeSymbols: | ||
| 317 | + listToken = token.split('|') | ||
| 318 | + lemma = listToken[1] | ||
| 319 | + if lemma in symbols: | ||
| 320 | + continue | ||
| 321 | + listLine.append(token) | ||
| 322 | + sentencesTrainingData.append(listLine) | ||
| 323 | + print(" Sentences training data: " + str(len(sentencesTrainingData))) | ||
| 324 | + | ||
| 325 | + with open(os.path.join(options.inputPath, options.testFile), "r") as iFile: | ||
| 326 | + for line in iFile.readlines(): | ||
| 327 | + listLine = [] | ||
| 328 | + line = line.strip('\n') | ||
| 329 | + for token in line.split(): | ||
| 330 | + if options.excludeStopWords: | ||
| 331 | + listToken = token.split('|') | ||
| 332 | + lemma = listToken[1] | ||
| 333 | + if lemma in stopwords: | ||
| 334 | + continue | ||
| 335 | + if options.excludeSymbols: | ||
| 336 | + listToken = token.split('|') | ||
| 337 | + lemma = listToken[1] | ||
| 338 | + if lemma in symbols: | ||
| 339 | + continue | ||
| 340 | + listLine.append(token) | ||
| 341 | + sentencesTestData.append(listLine) | ||
| 342 | + print(" Sentences test data: " + str(len(sentencesTestData))) | ||
| 343 | + | ||
| 344 | + print("Reading corpus done in: %fs" % (time() - t0)) | ||
| 345 | + | ||
| 346 | + print('-------------------------------- FEATURES --------------------------------') | ||
| 347 | + | ||
| 348 | + Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2] | ||
| 349 | + Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2] | ||
| 350 | + print('--------------------------Features Training ---------------------------') | ||
| 351 | + print(DF(list(Dtraning.items()))) | ||
| 352 | + print('--------------------------- FeaturesTest -----------------------------') | ||
| 353 | + print(DF(list(Dtest.items()))) | ||
| 354 | + | ||
| 355 | + t0 = time() | ||
| 356 | + | ||
| 357 | + X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData] | ||
| 358 | + y_train = [sent2labels(s) for s in sentencesTrainingData] | ||
| 359 | + | ||
| 360 | + X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData] | ||
| 361 | + # print X_test | ||
| 362 | + y_test = [sent2labels(s) for s in sentencesTestData] | ||
| 363 | + | ||
| 364 | + # Fixed parameters | ||
| 365 | + # crf = sklearn_crfsuite.CRF( | ||
| 366 | + # algorithm='lbfgs', | ||
| 367 | + # c1=0.1, | ||
| 368 | + # c2=0.1, | ||
| 369 | + # max_iterations=100, | ||
| 370 | + # all_pgossible_transitions=True | ||
| 371 | + # ) | ||
| 372 | + | ||
| 373 | + # Hyperparameter Optimization | ||
| 374 | + crf = sklearn_crfsuite.CRF( | ||
| 375 | + algorithm='lbfgs', | ||
| 376 | + max_iterations=100, | ||
| 377 | + all_possible_transitions=True | ||
| 378 | + ) | ||
| 379 | + params_space = { | ||
| 380 | + 'c1': scipy.stats.expon(scale=0.5), | ||
| 381 | + 'c2': scipy.stats.expon(scale=0.05), | ||
| 382 | + } | ||
| 383 | + | ||
| 384 | + # Original: labels = list(crf.classes_) | ||
| 385 | + # Original: labels.remove('O') | ||
| 386 | + labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH']) | ||
| 387 | + | ||
| 388 | + # use the same metric for evaluation | ||
| 389 | + f1_scorer = make_scorer(metrics.flat_f1_score, | ||
| 390 | + average='weighted', labels=labels) | ||
| 391 | + | ||
| 392 | + # search | ||
| 393 | + rs = RandomizedSearchCV(crf, params_space, | ||
| 394 | + cv=10, | ||
| 395 | + verbose=3, | ||
| 396 | + n_jobs=-1, | ||
| 397 | + n_iter=20, | ||
| 398 | + # n_iter=50, | ||
| 399 | + scoring=f1_scorer) | ||
| 400 | + rs.fit(X_train, y_train) | ||
| 401 | + | ||
| 402 | + # Fixed parameters | ||
| 403 | + # crf.fit(X_train, y_train) | ||
| 404 | + | ||
| 405 | + # Best hiperparameters | ||
| 406 | + # crf = rs.best_estimator_ | ||
| 407 | + | ||
| 408 | + nameReport = str(options.Gridname) + str(options.version) + '.txt' | ||
| 409 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile: | ||
| 410 | + oFile.write("********** TRAINING AND TESTING REPORT **********\n") | ||
| 411 | + oFile.write("Training file: " + options.trainingFile + '\n') | ||
| 412 | + oFile.write('\n') | ||
| 413 | + oFile.write('best params:' + str(rs.best_params_) + '\n') | ||
| 414 | + oFile.write('best CV score:' + str(rs.best_score_) + '\n') | ||
| 415 | + oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000)) | ||
| 416 | + | ||
| 417 | + print("Training done in: %fs" % (time() - t0)) | ||
| 418 | + t0 = time() | ||
| 419 | + | ||
| 420 | + # Update best crf | ||
| 421 | + crf = rs.best_estimator_ | ||
| 422 | + | ||
| 423 | + # Saving model | ||
| 424 | + print(" Saving training model...") | ||
| 425 | + t1 = time() | ||
| 426 | + nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '.mod' | ||
| 427 | + joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) | ||
| 428 | + print(" Saving training model done in: %fs" % (time() - t1)) | ||
| 429 | + | ||
| 430 | + # Evaluation against test data | ||
| 431 | + y_pred = crf.predict(X_test) | ||
| 432 | + print("*********************************") | ||
| 433 | + print("Prediction done in: %fs" % (time() - t0)) | ||
| 434 | + | ||
| 435 | + # labels = list(crf.classes_) | ||
| 436 | + # labels.remove('O') | ||
| 437 | + | ||
| 438 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile: | ||
| 439 | + oFile.write('\n') | ||
| 440 | + oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels))) | ||
| 441 | + oFile.write('\n') | ||
| 442 | + # labels = list(crf.classes_) | ||
| 443 | + sorted_labels = sorted( | ||
| 444 | + labels, | ||
| 445 | + key=lambda name: (name[1:], name[0]) | ||
| 446 | + ) | ||
| 447 | + oFile.write(metrics.flat_classification_report( | ||
| 448 | + y_test, y_pred, labels=sorted_labels, digits=3 | ||
| 449 | + )) | ||
| 450 | + oFile.write('\n') | ||
| 451 | + | ||
| 452 | + oFile.write("\nTop likely transitions:\n") | ||
| 453 | + print_transitions(Counter(crf.transition_features_).most_common(50), oFile) | ||
| 454 | + oFile.write('\n') | ||
| 455 | + | ||
| 456 | + oFile.write("\nTop unlikely transitions:\n") | ||
| 457 | + print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile) | ||
| 458 | + oFile.write('\n') | ||
| 459 | + | ||
| 460 | + oFile.write("\nTop positive:\n") | ||
| 461 | + print_state_features(Counter(crf.state_features_).most_common(200), oFile) | ||
| 462 | + oFile.write('\n') | ||
| 463 | + | ||
| 464 | + oFile.write("\nTop negative:\n") | ||
| 465 | + print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile) | ||
| 466 | + oFile.write('\n') | ||
| 467 | + |
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CRF/outputs/Run1_v1.txt
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| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003760s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 19 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.905489 - 1.1s | ||
| 20 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 21 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.577889 - 0.9s | ||
| 22 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 23 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.679766 - 1.1s | ||
| 24 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 25 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.767569 - 1.1s | ||
| 26 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 27 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.838429 - 1.2s | ||
| 28 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 29 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.857493 - 1.0s | ||
| 30 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 31 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.938387 - 1.1s | ||
| 32 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 33 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.848001 - 1.0s | ||
| 34 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 35 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.660012 - 1.0s | ||
| 36 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 37 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.721334 - 1.2s | ||
| 38 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 39 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.669962 - 0.8s | ||
| 40 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 41 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.703150 - 1.2s | ||
| 42 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 43 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.724515 - 1.2s | ||
| 44 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 45 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.708877 - 1.2s | ||
| 46 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 47 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.679766 - 1.2s | ||
| 48 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916 ................... | ||
| 49 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.597458 - 1.0s | ||
| 50 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124 .................. | ||
| 51 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.720311 - 1.2s | ||
| 52 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494 .................. | ||
| 53 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.661884 - 1.0s | ||
| 54 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 55 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.761418 - 1.2s | ||
| 56 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 57 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.586182 - 0.9s | ||
| 58 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916 ................... | ||
| 59 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.848001 - 1.2s | ||
| 60 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124 .................. | ||
| 61 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.596949 - 1.0s | ||
| 62 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 63 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.586182 - 1.1s | ||
| 64 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 65 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.905489 - 1.1s | ||
| 66 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 67 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.920970 - 1.0s | ||
| 68 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 69 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.866790 - 1.1s | ||
| 70 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 71 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.756561 - 1.2s | ||
| 72 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 73 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.741434 - 1.1s | ||
| 74 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 75 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.857493 - 1.1s | ||
| 76 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 77 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.687300 - 1.1s | ||
| 78 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916 ................... | ||
| 79 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.628354 - 1.1s | ||
| 80 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 81 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.921915 - 1.2s | ||
| 82 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 83 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.906853 - 1.2s | ||
| 84 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298 ................. | ||
| 85 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.674776 - 1.1s | ||
| 86 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017 ................... | ||
| 87 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.609849 - 1.0s | ||
| 88 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 89 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.547996 - 0.9s | ||
| 90 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 91 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.848001 - 1.2s | ||
| 92 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 93 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.773430 - 1.2s | ||
| 94 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 95 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.538621 - 0.9s | ||
| 96 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 97 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.848001 - 1.3s | ||
| 98 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056 ................. | ||
| 99 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.679766 - 0.9s | ||
| 100 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 101 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.906853 - 1.1s | ||
| 102 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816 ................ | ||
| 103 | +[CV] c1=0.09651425305864975, c2=0.0039926239609599816, score=0.921915 - 1.1s | ||
| 104 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807 ................... | ||
| 105 | +[CV] c1=0.5713116669674538, c2=0.01054418037901807, score=0.776203 - 1.1s | ||
| 106 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 107 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.872249 - 1.2s | ||
| 108 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916 ................... | ||
| 109 | +[CV] c1=0.20181412872449603, c2=0.1831099538162916, score=0.784628 - 1.2s | ||
| 110 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124 .................. | ||
| 111 | +[CV] c1=0.12349654401855631, c2=0.02271624803463124, score=0.741434 - 1.1s | ||
| 112 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494 .................. | ||
| 113 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.687750 - 1.1s | ||
| 114 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298 ................. | ||
| 115 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.710539 - 1.1s | ||
| 116 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017 ................... | ||
| 117 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.627348 - 1.0s | ||
| 118 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938 .................. | ||
| 119 | +[CV] c1=0.5461072593339137, c2=0.002561125547217938, score=0.761418 - 1.0s | ||
| 120 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697 ................. | ||
| 121 | +[CV] c1=0.22716579831507944, c2=0.007171535474090697, score=0.740663 - 1.4s | ||
| 122 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494 .................. | ||
| 123 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.730083 - 1.2s | ||
| 124 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298 ................. | ||
| 125 | +[CV] c1=0.1550751527481274, c2=0.0018910637535844298, score=0.583681 - 0.9s | ||
| 126 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084 ................. | ||
| 127 | +[CV] c1=0.24819385946875622, c2=0.052655886800089084, score=0.899703 - 1.2s | ||
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| 238 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
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| 310 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705 ................... | ||
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| 312 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494 .................. | ||
| 313 | +[CV] c1=0.9058341641460185, c2=0.007378307188927494, score=0.891760 - 1.1s | ||
| 314 | +[CV] c1=1.395645503093999, c2=0.03913303306397459 .................... | ||
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| 316 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017 ................... | ||
| 317 | +[CV] c1=1.0380596275637475, c2=0.18279171536318017, score=0.685536 - 1.1s | ||
| 318 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056 ................. | ||
| 319 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.753176 - 1.1s | ||
| 320 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705 ................... | ||
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| 322 | +[CV] c1=0.33745249047104287, c2=0.12028799387317968 .................. | ||
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| 324 | +[CV] c1=1.348060881200924, c2=0.05731692872510329 .................... | ||
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| 326 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
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| 328 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
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| 330 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
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| 332 | +[CV] c1=0.33745249047104287, c2=0.12028799387317968 .................. | ||
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| 334 | +[CV] c1=1.395645503093999, c2=0.03913303306397459 .................... | ||
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| 340 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
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| 342 | +[CV] c1=0.33745249047104287, c2=0.12028799387317968 .................. | ||
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| 344 | +[CV] c1=1.395645503093999, c2=0.03913303306397459 .................... | ||
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| 348 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
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| 350 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
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| 354 | +[CV] c1=1.395645503093999, c2=0.03913303306397459 .................... | ||
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| 360 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
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| 362 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436 ................. | ||
| 363 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.919762 - 1.1s | ||
| 364 | +[CV] c1=1.348060881200924, c2=0.05731692872510329 .................... | ||
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| 366 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
| 367 | +[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.689868 - 0.8s | ||
| 368 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
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| 370 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
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| 372 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436 ................. | ||
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| 374 | +[CV] c1=1.348060881200924, c2=0.05731692872510329 .................... | ||
| 375 | +[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.573741 - 1.1s | ||
| 376 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
| 377 | +[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.680407 - 0.8s | ||
| 378 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
| 379 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.845912 - 1.1s | ||
| 380 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705 ................... | ||
| 381 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.556324 - 0.9s | ||
| 382 | +[CV] c1=0.33745249047104287, c2=0.12028799387317968 .................. | ||
| 383 | +[CV] c1=0.33745249047104287, c2=0.12028799387317968, score=0.715320 - 1.0s | ||
| 384 | +[CV] c1=1.395645503093999, c2=0.03913303306397459 .................... | ||
| 385 | +[CV] c1=1.395645503093999, c2=0.03913303306397459, score=0.648261 - 1.4s | ||
| 386 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
| 387 | +[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.816730 - 1.0s | ||
| 388 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956 ................... | ||
| 389 | +[CV] c1=0.1126557712627844, c2=0.10045738310383956, score=0.919762 - 1.1s | ||
| 390 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196 .................. | ||
| 391 | +[CV] c1=0.5000947711428705, c2=0.016584093219888196, score=0.768203 - 1.1s | ||
| 392 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436 ................. | ||
| 393 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.866790 - 1.1s | ||
| 394 | +[CV] c1=1.348060881200924, c2=0.05731692872510329 .................... | ||
| 395 | +[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.748264 - 1.1s | ||
| 396 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
| 397 | +[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.624124 - 1.0s | ||
| 398 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056 ................. | ||
| 399 | +[CV] c1=0.27752606848750366, c2=0.036947033112907056, score=0.920970 - 1.2s | ||
| 400 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705 ................... | ||
| 401 | +[CV] c1=0.5994878159065081, c2=0.04116230984146705, score=0.883954 - 1.2s | ||
| 402 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436 ................. | ||
| 403 | +[CV] c1=0.38390254403775603, c2=0.019141773881786436, score=0.761418 - 1.1s | ||
| 404 | +[CV] c1=1.348060881200924, c2=0.05731692872510329 .................... | ||
| 405 | +[CV] c1=1.348060881200924, c2=0.05731692872510329, score=0.800487 - 1.1s | ||
| 406 | +[CV] c1=1.24594687727841, c2=0.044969845912413944 .................... | ||
| 407 | +[CV] c1=1.24594687727841, c2=0.044969845912413944, score=0.776399 - 1.0s | ||
| 408 | +Training done in: 7.289575s | ||
| 409 | + Saving training model... | ||
| 410 | + Saving training model done in: 0.015155s | ||
| 411 | +********************************* | ||
| 412 | +Prediction done in: 0.026515s |
CRF/outputs/Run1_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003629s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +--------------------------- FeaturesTest ----------------------------- | ||
| 23 | + 0 1 | ||
| 24 | +0 lemma delta-fnr | ||
| 25 | +1 postag NN | ||
| 26 | +2 -1:lemma _ | ||
| 27 | +3 -1:postag NN | ||
| 28 | +4 +1:lemma _ | ||
| 29 | +5 +1:postag CD | ||
| 30 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 31 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135 .................. | ||
| 32 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.659121 - 1.0s | ||
| 33 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687 ................. | ||
| 34 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687, score=0.721334 - 1.2s | ||
| 35 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114 .................. | ||
| 36 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114, score=0.656490 - 1.1s | ||
| 37 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165 .................. | ||
| 38 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165, score=0.632439 - 1.1s | ||
| 39 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293 .................. | ||
| 40 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.720311 - 1.2s | ||
| 41 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135 .................. | ||
| 42 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.573418 - 0.9s | ||
| 43 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687 ................. | ||
| 44 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687, score=0.674776 - 1.1s | ||
| 45 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114 .................. | ||
| 46 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114, score=0.721334 - 1.2s | ||
| 47 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165 .................. | ||
| 48 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165, score=0.715320 - 1.2s | ||
| 49 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293 .................. | ||
| 50 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.647203 - 1.2s | ||
| 51 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678 .................. | ||
| 52 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678, score=0.920970 - 1.1s | ||
| 53 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................ | ||
| 54 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.647203 - 1.2s | ||
| 55 | +[CV] c1=0.2962778461664418, c2=0.28403918392921157 ................... | ||
| 56 | +[CV] c1=0.2962778461664418, c2=0.28403918392921157, score=0.745362 - 1.1s | ||
| 57 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604 .................. | ||
| 58 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604, score=0.654823 - 1.0s | ||
| 59 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293 .................. | ||
| 60 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.919762 - 1.1s | ||
| 61 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678 .................. | ||
| 62 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678, score=0.660510 - 1.1s | ||
| 63 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................ | ||
| 64 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.867500 - 1.1s | ||
| 65 | +[CV] c1=0.2962778461664418, c2=0.28403918392921157 ................... | ||
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| 67 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604 .................. | ||
| 68 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604, score=0.720311 - 1.2s | ||
| 69 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555 ................... | ||
| 70 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555, score=0.564072 - 1.0s | ||
| 71 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678 .................. | ||
| 72 | +[CV] c1=0.07184657725057575, c2=0.06305366522004678, score=0.607039 - 0.8s | ||
| 73 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687 ................. | ||
| 74 | +[CV] c1=0.16006119829799537, c2=0.019860752797724687, score=0.865590 - 1.1s | ||
| 75 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114 .................. | ||
| 76 | +[CV] c1=0.4473078179611142, c2=0.031890587207333114, score=0.841313 - 1.2s | ||
| 77 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165 .................. | ||
| 78 | +[CV] c1=0.24874618699414613, c2=0.11465004865259165, score=0.919762 - 1.1s | ||
| 79 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293 .................. | ||
| 80 | +[CV] c1=0.08079651514556553, c2=0.07338414365364293, score=0.775757 - 1.2s | ||
| 81 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889 ................... | ||
| 82 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.654823 - 1.1s | ||
| 83 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
| 84 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.935386 - 1.1s | ||
| 85 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101 .................. | ||
| 86 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.647062 - 1.0s | ||
| 87 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604 .................. | ||
| 88 | +[CV] c1=0.09369139763074265, c2=0.07537173130694604, score=0.906853 - 1.1s | ||
| 89 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555 ................... | ||
| 90 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555, score=0.568556 - 1.1s | ||
| 91 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889 ................... | ||
| 92 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889, score=0.848001 - 1.2s | ||
| 93 | +[CV] c1=0.8749871337656958, c2=0.10465716037380113 ................... | ||
| 94 | +[CV] c1=0.8749871337656958, c2=0.10465716037380113, score=0.812515 - 1.1s | ||
| 95 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648 ................... | ||
| 96 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.787287 - 1.1s | ||
| 97 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214 ................. | ||
| 98 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.875991 - 0.9s | ||
| 99 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555 ................... | ||
| 100 | +[CV] c1=1.8472687447020986, c2=0.04257730516940555, score=0.660504 - 1.1s | ||
| 101 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547 ................... | ||
| 102 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.656490 - 1.2s | ||
| 103 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
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| 289 | +[CV] c1=0.02968662156028001, c2=0.12184278879734725 .................. | ||
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| 291 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135 .................. | ||
| 292 | +[CV] c1=0.7577102413636053, c2=0.053324799785666135, score=0.912680 - 1.3s | ||
| 293 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197 ................ | ||
| 294 | +[CV] c1=0.006393182611656157, c2=0.021090760536671197, score=0.902145 - 1.1s | ||
| 295 | +[CV] c1=0.2962778461664418, c2=0.28403918392921157 ................... | ||
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| 297 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214 ................. | ||
| 298 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.848001 - 1.2s | ||
| 299 | +[CV] c1=0.02968662156028001, c2=0.12184278879734725 .................. | ||
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| 301 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889 ................... | ||
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| 303 | +[CV] c1=0.8749871337656958, c2=0.10465716037380113 ................... | ||
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| 305 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648 ................... | ||
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| 307 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662 .................. | ||
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| 309 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064 .................. | ||
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| 315 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648 ................... | ||
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| 317 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662 .................. | ||
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| 319 | +[CV] c1=0.02968662156028001, c2=0.12184278879734725 .................. | ||
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| 323 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
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| 325 | +[CV] c1=0.2962778461664418, c2=0.28403918392921157 ................... | ||
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| 329 | +[CV] c1=0.02968662156028001, c2=0.12184278879734725 .................. | ||
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| 333 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
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| 335 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101 .................. | ||
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| 337 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214 ................. | ||
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| 339 | +[CV] c1=0.02968662156028001, c2=0.12184278879734725 .................. | ||
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| 341 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889 ................... | ||
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| 343 | +[CV] c1=0.8749871337656958, c2=0.10465716037380113 ................... | ||
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| 345 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648 ................... | ||
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| 347 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662 .................. | ||
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| 349 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064 .................. | ||
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| 351 | +[CV] c1=0.1483614516251027, c2=0.06633729885192889 ................... | ||
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| 353 | +[CV] c1=0.8749871337656958, c2=0.10465716037380113 ................... | ||
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| 355 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648 ................... | ||
| 356 | +[CV] c1=0.8748278310570387, c2=0.16014963439323648, score=0.624124 - 1.2s | ||
| 357 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662 .................. | ||
| 358 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.919762 - 1.4s | ||
| 359 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064 .................. | ||
| 360 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.580556 - 0.7s | ||
| 361 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547 ................... | ||
| 362 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.852821 - 1.2s | ||
| 363 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
| 364 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.760431 - 1.1s | ||
| 365 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101 .................. | ||
| 366 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.740663 - 1.1s | ||
| 367 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214 ................. | ||
| 368 | +[CV] c1=0.026281073826085702, c2=0.11845123072490214, score=0.887557 - 1.3s | ||
| 369 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064 .................. | ||
| 370 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.872249 - 0.9s | ||
| 371 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547 ................... | ||
| 372 | +[CV] c1=0.5898209423957529, c2=0.01037034945739547, score=0.708877 - 1.2s | ||
| 373 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803 ................ | ||
| 374 | +[CV] c1=0.014516456694382724, c2=0.020326963729101803, score=0.866790 - 1.1s | ||
| 375 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101 .................. | ||
| 376 | +[CV] c1=0.17342748153476484, c2=0.03315662632542101, score=0.783313 - 1.3s | ||
| 377 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662 .................. | ||
| 378 | +[CV] c1=0.23466274005583443, c2=0.14468669456987662, score=0.848001 - 1.2s | ||
| 379 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064 .................. | ||
| 380 | +[CV] c1=0.3233518999667819, c2=0.029859516013558064, score=0.867217 - 1.0s | ||
| 381 | +Training done in: 7.447655s | ||
| 382 | + Saving training model... | ||
| 383 | + Saving training model done in: 0.014152s | ||
| 384 | +********************************* | ||
| 385 | +Prediction done in: 0.025248s |
CRF/outputs/Run2_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003666s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=1.00966870162731, c2=0.025958556376657574 .................... | ||
| 19 | +[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.656999 - 1.0s | ||
| 20 | +[CV] c1=1.168847855695387, c2=0.054074754440257625 ................... | ||
| 21 | +[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.549071 - 0.9s | ||
| 22 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094 .................. | ||
| 23 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.559946 - 0.9s | ||
| 24 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 25 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.840539 - 1.1s | ||
| 26 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905 ................. | ||
| 27 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.660012 - 1.2s | ||
| 28 | +[CV] c1=1.00966870162731, c2=0.025958556376657574 .................... | ||
| 29 | +[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.826261 - 0.8s | ||
| 30 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832 .................. | ||
| 31 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.919762 - 1.0s | ||
| 32 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094 .................. | ||
| 33 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.761818 - 1.1s | ||
| 34 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 35 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.848001 - 1.2s | ||
| 36 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905 ................. | ||
| 37 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.761418 - 1.1s | ||
| 38 | +[CV] c1=1.00966870162731, c2=0.025958556376657574 .................... | ||
| 39 | +[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.716676 - 0.9s | ||
| 40 | +[CV] c1=1.168847855695387, c2=0.054074754440257625 ................... | ||
| 41 | +[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.670684 - 1.1s | ||
| 42 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433 ................... | ||
| 43 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.872399 - 1.1s | ||
| 44 | +[CV] c1=0.6765797517220264, c2=0.007434912899378703 .................. | ||
| 45 | +[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.743125 - 1.1s | ||
| 46 | +[CV] c1=0.20078106949479455, c2=0.023670407350363146 ................. | ||
| 47 | +[CV] c1=0.20078106949479455, c2=0.023670407350363146, score=0.838429 - 1.0s | ||
| 48 | +[CV] c1=1.00966870162731, c2=0.025958556376657574 .................... | ||
| 49 | +[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.641040 - 0.9s | ||
| 50 | +[CV] c1=1.168847855695387, c2=0.054074754440257625 ................... | ||
| 51 | +[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.704277 - 1.0s | ||
| 52 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433 ................... | ||
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| 54 | +[CV] c1=0.6765797517220264, c2=0.007434912899378703 .................. | ||
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| 56 | +[CV] c1=0.20078106949479455, c2=0.023670407350363146 ................. | ||
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| 58 | +[CV] c1=1.00966870162731, c2=0.025958556376657574 .................... | ||
| 59 | +[CV] c1=1.00966870162731, c2=0.025958556376657574, score=0.787287 - 0.8s | ||
| 60 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832 .................. | ||
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| 62 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094 .................. | ||
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| 64 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 65 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.919762 - 1.0s | ||
| 66 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905 ................. | ||
| 67 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.852821 - 1.2s | ||
| 68 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598 .................. | ||
| 69 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.566523 - 1.1s | ||
| 70 | +[CV] c1=0.6326902790510075, c2=0.060383400796135134 .................. | ||
| 71 | +[CV] c1=0.6326902790510075, c2=0.060383400796135134, score=0.704866 - 1.2s | ||
| 72 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433 ................... | ||
| 73 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.576589 - 1.0s | ||
| 74 | +[CV] c1=0.6765797517220264, c2=0.007434912899378703 .................. | ||
| 75 | +[CV] c1=0.6765797517220264, c2=0.007434912899378703, score=0.666440 - 1.0s | ||
| 76 | +[CV] c1=0.20078106949479455, c2=0.023670407350363146 ................. | ||
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| 78 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378 .................... | ||
| 79 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.761818 - 1.0s | ||
| 80 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832 .................. | ||
| 81 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.660510 - 1.2s | ||
| 82 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094 .................. | ||
| 83 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.891760 - 1.2s | ||
| 84 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 85 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.607039 - 0.9s | ||
| 86 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905 ................. | ||
| 87 | +[CV] c1=0.48395276763378503, c2=0.022365459591399905, score=0.848001 - 1.3s | ||
| 88 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378 .................... | ||
| 89 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.852821 - 1.1s | ||
| 90 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832 .................. | ||
| 91 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.592237 - 1.0s | ||
| 92 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094 .................. | ||
| 93 | +[CV] c1=0.7463567881969966, c2=0.010504031522292094, score=0.843338 - 1.2s | ||
| 94 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 95 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.718941 - 1.2s | ||
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| 304 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598 .................. | ||
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| 316 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
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| 318 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598 .................. | ||
| 319 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.547996 - 0.9s | ||
| 320 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 321 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.716676 - 1.1s | ||
| 322 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 323 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.559475 - 0.9s | ||
| 324 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378 .................... | ||
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| 326 | +[CV] c1=1.168847855695387, c2=0.054074754440257625 ................... | ||
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| 328 | +[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................ | ||
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| 330 | +[CV] c1=0.2837138419533594, c2=0.009966189901122134 .................. | ||
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| 332 | +[CV] c1=0.10973444640225576, c2=0.010828669158530741 ................. | ||
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| 334 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201 .................. | ||
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| 336 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
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| 338 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598 .................. | ||
| 339 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.857493 - 1.2s | ||
| 340 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 341 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.701526 - 1.1s | ||
| 342 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 343 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.596309 - 0.9s | ||
| 344 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201 .................. | ||
| 345 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.920970 - 1.2s | ||
| 346 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
| 347 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.691841 - 1.1s | ||
| 348 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598 .................. | ||
| 349 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.778347 - 1.2s | ||
| 350 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 351 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.566256 - 1.0s | ||
| 352 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
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| 354 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598 .................. | ||
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| 356 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832 .................. | ||
| 357 | +[CV] c1=0.22656149469246054, c2=0.06475330717049832, score=0.652192 - 1.0s | ||
| 358 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
| 359 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.852672 - 1.2s | ||
| 360 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661 .................. | ||
| 361 | +[CV] c1=0.06766924551335582, c2=0.05664528713448661, score=0.654823 - 1.0s | ||
| 362 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 363 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.836651 - 1.1s | ||
| 364 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 365 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.588339 - 0.9s | ||
| 366 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598 .................. | ||
| 367 | +[CV] c1=0.37276009448707553, c2=0.08055336693981598, score=0.748070 - 1.1s | ||
| 368 | +[CV] c1=0.6326902790510075, c2=0.060383400796135134 .................. | ||
| 369 | +[CV] c1=0.6326902790510075, c2=0.060383400796135134, score=0.794740 - 1.2s | ||
| 370 | +[CV] c1=0.016463867524667154, c2=0.009787977090088149 ................ | ||
| 371 | +[CV] c1=0.016463867524667154, c2=0.009787977090088149, score=0.866790 - 1.3s | ||
| 372 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 373 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.687750 - 1.4s | ||
| 374 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 375 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.512837 - 0.7s | ||
| 376 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201 .................. | ||
| 377 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.876920 - 1.4s | ||
| 378 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
| 379 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.564654 - 0.9s | ||
| 380 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598 .................. | ||
| 381 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.843338 - 1.1s | ||
| 382 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 383 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.856715 - 1.2s | ||
| 384 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 385 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.657444 - 0.9s | ||
| 386 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378 .................... | ||
| 387 | +[CV] c1=0.6395797105929565, c2=0.0461197515046378, score=0.883954 - 1.2s | ||
| 388 | +[CV] c1=1.168847855695387, c2=0.054074754440257625 ................... | ||
| 389 | +[CV] c1=1.168847855695387, c2=0.054074754440257625, score=0.686713 - 1.2s | ||
| 390 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433 ................... | ||
| 391 | +[CV] c1=0.7823077481969921, c2=0.03404532137185433, score=0.891760 - 1.3s | ||
| 392 | +[CV] c1=0.2837138419533594, c2=0.009966189901122134 .................. | ||
| 393 | +[CV] c1=0.2837138419533594, c2=0.009966189901122134, score=0.740663 - 1.3s | ||
| 394 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 395 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.580569 - 1.0s | ||
| 396 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201 .................. | ||
| 397 | +[CV] c1=0.16888346085657382, c2=0.02208269716963201, score=0.713945 - 1.3s | ||
| 398 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804 ................... | ||
| 399 | +[CV] c1=0.8607518495035315, c2=0.15862627698471804, score=0.654029 - 1.1s | ||
| 400 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598 .................. | ||
| 401 | +[CV] c1=0.6168211659220036, c2=0.006845272732197598, score=0.761818 - 1.2s | ||
| 402 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405 .................. | ||
| 403 | +[CV] c1=0.9988969075737604, c2=0.006345198146357405, score=0.787287 - 1.3s | ||
| 404 | +[CV] c1=2.243122699972053, c2=0.02408920842785463 .................... | ||
| 405 | +[CV] c1=2.243122699972053, c2=0.02408920842785463, score=0.660504 - 0.9s | ||
| 406 | +Training done in: 7.331329s | ||
| 407 | + Saving training model... | ||
| 408 | + Saving training model done in: 0.014029s | ||
| 409 | +********************************* | ||
| 410 | +Prediction done in: 0.024944s |
CRF/outputs/Run2_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003846s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 word[:1] 1 | ||
| 27 | +--------------------------- FeaturesTest ----------------------------- | ||
| 28 | + 0 1 | ||
| 29 | +0 lemma delta-fnr | ||
| 30 | +1 postag NN | ||
| 31 | +2 -1:lemma _ | ||
| 32 | +3 -1:postag NN | ||
| 33 | +4 +1:lemma _ | ||
| 34 | +5 +1:postag CD | ||
| 35 | +6 hUpper False | ||
| 36 | +7 hLower False | ||
| 37 | +8 hGreek False | ||
| 38 | +9 symb True | ||
| 39 | +10 word[:1] d | ||
| 40 | +11 word[:2] de | ||
| 41 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 42 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011 .................. | ||
| 43 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.692390 - 1.1s | ||
| 44 | +[CV] c1=1.4589431115727765, c2=0.00462048934522589 ................... | ||
| 45 | +[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.677656 - 1.4s | ||
| 46 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346 .................. | ||
| 47 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.697829 - 1.6s | ||
| 48 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295 .................. | ||
| 49 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.720638 - 1.4s | ||
| 50 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053 .................. | ||
| 51 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.716901 - 1.5s | ||
| 52 | +[CV] c1=0.298080277984045, c2=0.05416968597972857 .................... | ||
| 53 | +[CV] c1=0.298080277984045, c2=0.05416968597972857, score=0.866982 - 1.4s | ||
| 54 | +[CV] c1=0.350973260533853, c2=0.010037581949873645 ................... | ||
| 55 | +[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.701470 - 1.2s | ||
| 56 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346 .................. | ||
| 57 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.687400 - 1.3s | ||
| 58 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295 .................. | ||
| 59 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.941969 - 1.5s | ||
| 60 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053 .................. | ||
| 61 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.712895 - 1.1s | ||
| 62 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011 .................. | ||
| 63 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.764724 - 1.3s | ||
| 64 | +[CV] c1=1.4589431115727765, c2=0.00462048934522589 ................... | ||
| 65 | +[CV] c1=1.4589431115727765, c2=0.00462048934522589, score=0.691639 - 1.4s | ||
| 66 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346 .................. | ||
| 67 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.765131 - 1.3s | ||
| 68 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295 .................. | ||
| 69 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.891979 - 1.4s | ||
| 70 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053 .................. | ||
| 71 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.704318 - 1.4s | ||
| 72 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011 .................. | ||
| 73 | +[CV] c1=0.7552293645263738, c2=0.010542927773867011, score=0.679052 - 1.4s | ||
| 74 | +[CV] c1=0.350973260533853, c2=0.010037581949873645 ................... | ||
| 75 | +[CV] c1=0.350973260533853, c2=0.010037581949873645, score=0.723654 - 1.3s | ||
| 76 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346 .................. | ||
| 77 | +[CV] c1=0.47432740691636344, c2=0.03758235542198346, score=0.882037 - 1.4s | ||
| 78 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295 .................. | ||
| 79 | +[CV] c1=0.4819640275387183, c2=0.029691473721229295, score=0.687400 - 1.3s | ||
| 80 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053 .................. | ||
| 81 | +[CV] c1=0.21506344691612903, c2=0.02416742878069053, score=0.885770 - 1.5s | ||
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| 417 | +[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.905956 - 1.5s | ||
| 418 | +[CV] c1=0.5405494603106622, c2=0.02185761043719437 ................... | ||
| 419 | +[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.941969 - 1.4s | ||
| 420 | +[CV] c1=0.3811975088263534, c2=0.09035610955818969 ................... | ||
| 421 | +[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.877324 - 1.2s | ||
| 422 | +[CV] c1=0.24706375983667295, c2=0.024420937052355998 ................. | ||
| 423 | +[CV] c1=0.24706375983667295, c2=0.024420937052355998, score=0.943015 - 1.5s | ||
| 424 | +[CV] c1=0.5752830046115532, c2=0.029011946679537343 .................. | ||
| 425 | +[CV] c1=0.5752830046115532, c2=0.029011946679537343, score=0.941969 - 1.5s | ||
| 426 | +[CV] c1=0.12822074735920433, c2=0.028255623123597452 ................. | ||
| 427 | +[CV] c1=0.12822074735920433, c2=0.028255623123597452, score=0.712895 - 1.3s | ||
| 428 | +[CV] c1=0.5405494603106622, c2=0.02185761043719437 ................... | ||
| 429 | +[CV] c1=0.5405494603106622, c2=0.02185761043719437, score=0.746445 - 1.4s | ||
| 430 | +[CV] c1=0.3811975088263534, c2=0.09035610955818969 ................... | ||
| 431 | +[CV] c1=0.3811975088263534, c2=0.09035610955818969, score=0.941969 - 1.2s | ||
| 432 | +Training done in: 9.118032s | ||
| 433 | + Saving training model... | ||
| 434 | + Saving training model done in: 0.013122s | ||
| 435 | +********************************* | ||
| 436 | +Prediction done in: 0.030181s |
CRF/outputs/Run3_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003814s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.016595180754549518, c2=0.030948306031002376 ................ | ||
| 19 | +[CV] c1=0.016595180754549518, c2=0.030948306031002376, score=0.867500 - 1.3s | ||
| 20 | +[CV] c1=0.7863468698144266, c2=0.0037442044888246354 ................. | ||
| 21 | +[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.903565 - 1.2s | ||
| 22 | +[CV] c1=0.43749590188690224, c2=0.13150259694056668 .................. | ||
| 23 | +[CV] c1=0.43749590188690224, c2=0.13150259694056668, score=0.883954 - 1.3s | ||
| 24 | +[CV] c1=1.5356087724511331, c2=0.14043664965912495 ................... | ||
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| 388 | +[CV] c1=0.649264531621016, c2=0.031877071613145826 ................... | ||
| 389 | +[CV] c1=0.649264531621016, c2=0.031877071613145826, score=0.713917 - 1.1s | ||
| 390 | +[CV] c1=0.10489093988322791, c2=0.040276414459420484 ................. | ||
| 391 | +[CV] c1=0.10489093988322791, c2=0.040276414459420484, score=0.735607 - 1.1s | ||
| 392 | +[CV] c1=0.09784611146788476, c2=0.054300102474929904 ................. | ||
| 393 | +[CV] c1=0.09784611146788476, c2=0.054300102474929904, score=0.731639 - 1.3s | ||
| 394 | +[CV] c1=0.44728536850250333, c2=0.015283238629035883 ................. | ||
| 395 | +[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.835074 - 1.0s | ||
| 396 | +[CV] c1=1.1186692278337627, c2=0.22309738782267205 ................... | ||
| 397 | +[CV] c1=1.1186692278337627, c2=0.22309738782267205, score=0.598718 - 0.8s | ||
| 398 | +[CV] c1=0.5233514980566518, c2=0.05607213609434676 ................... | ||
| 399 | +[CV] c1=0.5233514980566518, c2=0.05607213609434676, score=0.721334 - 1.1s | ||
| 400 | +[CV] c1=0.7863468698144266, c2=0.0037442044888246354 ................. | ||
| 401 | +[CV] c1=0.7863468698144266, c2=0.0037442044888246354, score=0.891760 - 1.3s | ||
| 402 | +[CV] c1=0.3568772328262357, c2=0.03679897833962741 ................... | ||
| 403 | +[CV] c1=0.3568772328262357, c2=0.03679897833962741, score=0.721334 - 1.1s | ||
| 404 | +[CV] c1=1.5356087724511331, c2=0.14043664965912495 ................... | ||
| 405 | +[CV] c1=1.5356087724511331, c2=0.14043664965912495, score=0.654414 - 1.2s | ||
| 406 | +[CV] c1=0.44728536850250333, c2=0.015283238629035883 ................. | ||
| 407 | +[CV] c1=0.44728536850250333, c2=0.015283238629035883, score=0.899703 - 0.8s | ||
| 408 | +Training done in: 7.351656s | ||
| 409 | + Saving training model... | ||
| 410 | + Saving training model done in: 0.013628s | ||
| 411 | +********************************* | ||
| 412 | +Prediction done in: 0.024027s |
CRF/outputs/Run3_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003654s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 word 1 | ||
| 23 | +5 isUpper False | ||
| 24 | +6 isLower False | ||
| 25 | +7 isGreek False | ||
| 26 | +8 isNumber True | ||
| 27 | +9 -1:word PQ | ||
| 28 | +--------------------------- FeaturesTest ----------------------------- | ||
| 29 | + 0 1 | ||
| 30 | +0 lemma delta-fnr | ||
| 31 | +1 postag NN | ||
| 32 | +2 -1:lemma _ | ||
| 33 | +3 -1:postag NN | ||
| 34 | +4 +1:lemma _ | ||
| 35 | +5 +1:postag CD | ||
| 36 | +6 word delta-fnr | ||
| 37 | +7 isUpper False | ||
| 38 | +8 isLower True | ||
| 39 | +9 isGreek False | ||
| 40 | +10 isNumber False | ||
| 41 | +11 -1:word _ | ||
| 42 | +12 +1:word _ | ||
| 43 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 44 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 45 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.630601 - 1.2s | ||
| 46 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 47 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.848001 - 1.6s | ||
| 48 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973 .................. | ||
| 49 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.899703 - 1.6s | ||
| 50 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 51 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.742271 - 1.4s | ||
| 52 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 53 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.678771 - 1.1s | ||
| 54 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754 .................. | ||
| 55 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.719617 - 1.4s | ||
| 56 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 57 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.873584 - 1.5s | ||
| 58 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573 ................. | ||
| 59 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.690262 - 1.3s | ||
| 60 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 61 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.577546 - 1.2s | ||
| 62 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626 ................. | ||
| 63 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.719481 - 1.1s | ||
| 64 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137 ................... | ||
| 65 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.902737 - 1.6s | ||
| 66 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 67 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.549739 - 1.2s | ||
| 68 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 69 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.925743 - 1.5s | ||
| 70 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 71 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.848001 - 1.5s | ||
| 72 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 73 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.940286 - 1.4s | ||
| 74 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 75 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.849399 - 1.4s | ||
| 76 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578 .................. | ||
| 77 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.887803 - 1.2s | ||
| 78 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573 ................. | ||
| 79 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.853386 - 1.4s | ||
| 80 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574 ................... | ||
| 81 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.632374 - 1.3s | ||
| 82 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626 ................. | ||
| 83 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.857175 - 1.4s | ||
| 84 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754 .................. | ||
| 85 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.863912 - 1.4s | ||
| 86 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578 .................. | ||
| 87 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.768974 - 1.3s | ||
| 88 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573 ................. | ||
| 89 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.938387 - 1.5s | ||
| 90 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574 ................... | ||
| 91 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.624854 - 1.3s | ||
| 92 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626 ................. | ||
| 93 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.721089 - 1.2s | ||
| 94 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137 ................... | ||
| 95 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.624196 - 1.2s | ||
| 96 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 97 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.849399 - 1.5s | ||
| 98 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 99 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.904833 - 1.7s | ||
| 100 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 101 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.908205 - 1.4s | ||
| 102 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626 ................. | ||
| 103 | +[CV] c1=0.18982871503169924, c2=0.046233745555238626, score=0.692991 - 1.3s | ||
| 104 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754 .................. | ||
| 105 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.803642 - 1.5s | ||
| 106 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578 .................. | ||
| 107 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.680458 - 1.3s | ||
| 108 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 109 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.919762 - 1.4s | ||
| 110 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 111 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.703784 - 1.5s | ||
| 112 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575 .................. | ||
| 113 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.883871 - 1.0s | ||
| 114 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137 ................... | ||
| 115 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.866790 - 1.6s | ||
| 116 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 117 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.871122 - 1.5s | ||
| 118 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 119 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.747448 - 1.5s | ||
| 120 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 121 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.757664 - 1.5s | ||
| 122 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575 .................. | ||
| 123 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.708356 - 1.4s | ||
| 124 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754 .................. | ||
| 125 | +[CV] c1=0.8685665773754986, c2=0.040475472475883754, score=0.675999 - 1.3s | ||
| 126 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 127 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.927708 - 1.5s | ||
| 128 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 129 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.899703 - 1.4s | ||
| 130 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 131 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.919762 - 1.6s | ||
| 132 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575 .................. | ||
| 133 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.690262 - 1.1s | ||
| 134 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137 ................... | ||
| 135 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.938387 - 1.5s | ||
| 136 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 137 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.737065 - 1.5s | ||
| 138 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 139 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.717966 - 1.5s | ||
| 140 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574 ................... | ||
| 141 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.671836 - 1.5s | ||
| 142 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575 .................. | ||
| 143 | +[CV] c1=0.11429489799744622, c2=0.01488578964446575, score=0.935584 - 1.1s | ||
| 144 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137 ................... | ||
| 145 | +[CV] c1=0.2905084415493135, c2=0.01849397696699137, score=0.747448 - 1.5s | ||
| 146 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243 .................. | ||
| 147 | +[CV] c1=0.9997736934864921, c2=0.026878803960042243, score=0.687077 - 1.5s | ||
| 148 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103 ................. | ||
| 149 | +[CV] c1=0.22692190968141177, c2=0.023819618838019103, score=0.627027 - 1.2s | ||
| 150 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175 .................. | ||
| 151 | +[CV] c1=0.25483228949461545, c2=0.13089764900278175, score=0.857982 - 1.5s | ||
| 152 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 153 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.731659 - 1.4s | ||
| 154 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 155 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.719617 - 1.5s | ||
| 156 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578 .................. | ||
| 157 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.929632 - 1.4s | ||
| 158 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573 ................. | ||
| 159 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.602106 - 1.3s | ||
| 160 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574 ................... | ||
| 161 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.779997 - 1.4s | ||
| 162 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 163 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.823710 - 1.4s | ||
| 164 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 165 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.706548 - 1.3s | ||
| 166 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578 .................. | ||
| 167 | +[CV] c1=0.5665040037123241, c2=0.011962486026690578, score=0.720838 - 1.3s | ||
| 168 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573 ................. | ||
| 169 | +[CV] c1=0.07999002423801141, c2=0.000868661924339573, score=0.752021 - 1.4s | ||
| 170 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574 ................... | ||
| 171 | +[CV] c1=1.6511701323120827, c2=0.08558259304928574, score=0.726221 - 1.4s | ||
| 172 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 173 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.900039 - 1.5s | ||
| 174 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 175 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.532088 - 1.3s | ||
| 176 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688 .................. | ||
| 177 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.738823 - 1.4s | ||
| 178 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467 .................. | ||
| 179 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.665417 - 1.5s | ||
| 180 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339 .................. | ||
| 181 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.690262 - 1.3s | ||
| 182 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 183 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.620108 - 1.2s | ||
| 184 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 185 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.818254 - 1.5s | ||
| 186 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688 .................. | ||
| 187 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.665417 - 1.3s | ||
| 188 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467 .................. | ||
| 189 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.721089 - 1.5s | ||
| 190 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339 .................. | ||
| 191 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.734882 - 1.3s | ||
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| 372 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814 ................... | ||
| 373 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.678081 - 1.3s | ||
| 374 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 375 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.848001 - 1.5s | ||
| 376 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 377 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.892457 - 1.4s | ||
| 378 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973 .................. | ||
| 379 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.943287 - 1.4s | ||
| 380 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................ | ||
| 381 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.705101 - 1.5s | ||
| 382 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814 ................... | ||
| 383 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.703127 - 1.0s | ||
| 384 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 385 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.819775 - 1.5s | ||
| 386 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 387 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.721089 - 1.4s | ||
| 388 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973 .................. | ||
| 389 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.721089 - 1.5s | ||
| 390 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................ | ||
| 391 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.819775 - 1.4s | ||
| 392 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814 ................... | ||
| 393 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.726221 - 1.1s | ||
| 394 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393 ................ | ||
| 395 | +[CV] c1=0.031955518564645284, c2=0.004198138415764393, score=0.684656 - 1.4s | ||
| 396 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857 ................... | ||
| 397 | +[CV] c1=0.6747528619946138, c2=0.07283789541988857, score=0.863912 - 1.4s | ||
| 398 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688 .................. | ||
| 399 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.698041 - 1.4s | ||
| 400 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467 .................. | ||
| 401 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.766835 - 1.4s | ||
| 402 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339 .................. | ||
| 403 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.937982 - 1.3s | ||
| 404 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 405 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.906853 - 1.5s | ||
| 406 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 407 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.608111 - 1.1s | ||
| 408 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973 .................. | ||
| 409 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.843585 - 1.5s | ||
| 410 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................ | ||
| 411 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.921146 - 1.5s | ||
| 412 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814 ................... | ||
| 413 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.681542 - 1.0s | ||
| 414 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 415 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.690262 - 1.5s | ||
| 416 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 417 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.665417 - 1.3s | ||
| 418 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688 .................. | ||
| 419 | +[CV] c1=0.04258998203691286, c2=0.08845660294483688, score=0.629561 - 1.4s | ||
| 420 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467 .................. | ||
| 421 | +[CV] c1=0.08442255640374982, c2=0.07334312442868467, score=0.613609 - 1.3s | ||
| 422 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339 .................. | ||
| 423 | +[CV] c1=0.17037724024202613, c2=0.04579884459555339, score=0.883871 - 1.4s | ||
| 424 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496 ................. | ||
| 425 | +[CV] c1=0.15911702521720522, c2=0.046161934701581496, score=0.933070 - 1.6s | ||
| 426 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821 .................. | ||
| 427 | +[CV] c1=0.09008322955518538, c2=0.07446232300940821, score=0.925714 - 1.3s | ||
| 428 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973 .................. | ||
| 429 | +[CV] c1=0.25902302075140105, c2=0.03091362551658973, score=0.747448 - 1.4s | ||
| 430 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207 ................ | ||
| 431 | +[CV] c1=0.10267282220358842, c2=0.0004147936931735207, score=0.752021 - 1.4s | ||
| 432 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814 ................... | ||
| 433 | +[CV] c1=1.6087629131114594, c2=0.06538470359631814, score=0.624854 - 1.1s | ||
| 434 | +Training done in: 9.342762s | ||
| 435 | + Saving training model... | ||
| 436 | + Saving training model done in: 0.013957s | ||
| 437 | +********************************* | ||
| 438 | +Prediction done in: 0.032526s |
CRF/outputs/Run4_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003836s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 19 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.567237 - 0.9s | ||
| 20 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 21 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.852821 - 1.1s | ||
| 22 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 23 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.654823 - 1.0s | ||
| 24 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
| 25 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.921915 - 1.2s | ||
| 26 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
| 27 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.899703 - 1.2s | ||
| 28 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589 ................. | ||
| 29 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.920970 - 1.4s | ||
| 30 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 31 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.720311 - 1.3s | ||
| 32 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 33 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.675506 - 1.3s | ||
| 34 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 35 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.570419 - 1.0s | ||
| 36 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 37 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.723593 - 0.8s | ||
| 38 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 39 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.710539 - 1.2s | ||
| 40 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 41 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.867500 - 1.1s | ||
| 42 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 43 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.701323 - 1.2s | ||
| 44 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 45 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.858883 - 1.2s | ||
| 46 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 47 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.848230 - 0.7s | ||
| 48 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 49 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.753693 - 1.2s | ||
| 50 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 51 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.766835 - 1.0s | ||
| 52 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 53 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.624832 - 1.2s | ||
| 54 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 55 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.679766 - 1.3s | ||
| 56 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
| 57 | +[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.802426 - 0.9s | ||
| 58 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 59 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.919762 - 1.1s | ||
| 60 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 61 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.887557 - 1.1s | ||
| 62 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 63 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.640353 - 1.1s | ||
| 64 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 65 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.848001 - 1.2s | ||
| 66 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 67 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.774739 - 0.9s | ||
| 68 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
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| 70 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185 ................. | ||
| 71 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.920970 - 1.2s | ||
| 72 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 73 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.691890 - 1.3s | ||
| 74 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 75 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.864316 - 1.2s | ||
| 76 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
| 77 | +[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.717157 - 0.8s | ||
| 78 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
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| 80 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 81 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.848001 - 1.2s | ||
| 82 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 83 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.853988 - 1.2s | ||
| 84 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 85 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.920970 - 1.2s | ||
| 86 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 87 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.763058 - 0.9s | ||
| 88 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735 ................. | ||
| 89 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.643807 - 1.2s | ||
| 90 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173 ................. | ||
| 91 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.715300 - 1.1s | ||
| 92 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
| 93 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.632407 - 1.0s | ||
| 94 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872 ................. | ||
| 95 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.867500 - 1.1s | ||
| 96 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
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| 98 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 99 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.556973 - 1.0s | ||
| 100 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
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| 102 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 103 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.557241 - 1.0s | ||
| 104 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 105 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.737308 - 1.3s | ||
| 106 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 107 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.935386 - 1.1s | ||
| 108 | +[CV] c1=0.478213957506215, c2=0.020477014457446593 ................... | ||
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| 110 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
| 111 | +[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.753693 - 1.1s | ||
| 112 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739 ................... | ||
| 113 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.606581 - 1.0s | ||
| 114 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872 ................. | ||
| 115 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.887557 - 1.0s | ||
| 116 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 117 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.753693 - 1.2s | ||
| 118 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735 ................. | ||
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| 120 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173 ................. | ||
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| 122 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
| 123 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.637423 - 1.0s | ||
| 124 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
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| 126 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
| 127 | +[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.834063 - 1.2s | ||
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| 132 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
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| 140 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
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| 204 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
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| 206 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
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| 218 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
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| 230 | +[CV] c1=0.478213957506215, c2=0.020477014457446593 ................... | ||
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| 232 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
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| 234 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739 ................... | ||
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| 238 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
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| 244 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
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| 248 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
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| 252 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
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| 268 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
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| 272 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
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| 280 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185 ................. | ||
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| 282 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
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| 286 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
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| 292 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
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| 294 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
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| 296 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
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| 298 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589 ................. | ||
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| 306 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
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| 308 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589 ................. | ||
| 309 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.906853 - 1.3s | ||
| 310 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185 ................. | ||
| 311 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.603251 - 0.9s | ||
| 312 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
| 313 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.848001 - 1.3s | ||
| 314 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
| 315 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.740663 - 1.2s | ||
| 316 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
| 317 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.878327 - 0.9s | ||
| 318 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 319 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.740663 - 1.0s | ||
| 320 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735 ................. | ||
| 321 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.875991 - 1.2s | ||
| 322 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
| 323 | +[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.716266 - 1.3s | ||
| 324 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739 ................... | ||
| 325 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.578869 - 1.1s | ||
| 326 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034 .................. | ||
| 327 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.753693 - 1.1s | ||
| 328 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 329 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.674776 - 0.8s | ||
| 330 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 331 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.729308 - 1.2s | ||
| 332 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485 ................. | ||
| 333 | +[CV] c1=0.035487685725177805, c2=0.07066796438693485, score=0.607039 - 0.9s | ||
| 334 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156 ................... | ||
| 335 | +[CV] c1=0.7754820747377101, c2=0.12099050393613156, score=0.787287 - 1.3s | ||
| 336 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598 .................. | ||
| 337 | +[CV] c1=0.38805051498984994, c2=0.01477620810001598, score=0.782641 - 1.4s | ||
| 338 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 339 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.720311 - 1.2s | ||
| 340 | +[CV] c1=0.478213957506215, c2=0.020477014457446593 ................... | ||
| 341 | +[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.919762 - 1.1s | ||
| 342 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
| 343 | +[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.729308 - 1.2s | ||
| 344 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739 ................... | ||
| 345 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.788630 - 1.1s | ||
| 346 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034 .................. | ||
| 347 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.852821 - 1.1s | ||
| 348 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 349 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.906853 - 1.2s | ||
| 350 | +[CV] c1=0.478213957506215, c2=0.020477014457446593 ................... | ||
| 351 | +[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.547996 - 1.0s | ||
| 352 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
| 353 | +[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.855614 - 1.2s | ||
| 354 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739 ................... | ||
| 355 | +[CV] c1=1.2077186464874288, c2=0.11106721030811739, score=0.722890 - 1.1s | ||
| 356 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034 .................. | ||
| 357 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.728584 - 1.1s | ||
| 358 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 359 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.812131 - 1.1s | ||
| 360 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672 ................... | ||
| 361 | +[CV] c1=0.5672718732034153, c2=0.02408083022682672, score=0.899703 - 1.3s | ||
| 362 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173 ................. | ||
| 363 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.841313 - 1.4s | ||
| 364 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
| 365 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.852672 - 1.2s | ||
| 366 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034 .................. | ||
| 367 | +[CV] c1=0.725079276744011, c2=0.0025324013059438034, score=0.843338 - 1.2s | ||
| 368 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589 ................. | ||
| 369 | +[CV] c1=0.15761238349200285, c2=0.002525593517619589, score=0.867217 - 1.5s | ||
| 370 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185 ................. | ||
| 371 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.866790 - 1.1s | ||
| 372 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
| 373 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.741434 - 1.3s | ||
| 374 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
| 375 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.920970 - 1.1s | ||
| 376 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
| 377 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.728987 - 0.9s | ||
| 378 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085 .................. | ||
| 379 | +[CV] c1=0.08401658210095098, c2=0.01884625069711085, score=0.920970 - 1.5s | ||
| 380 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185 ................. | ||
| 381 | +[CV] c1=0.10252491344185391, c2=0.035456409715521185, score=0.814619 - 1.2s | ||
| 382 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011 .................... | ||
| 383 | +[CV] c1=0.1942293390156905, c2=0.0118048238421011, score=0.839369 - 1.1s | ||
| 384 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
| 385 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.838429 - 1.1s | ||
| 386 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
| 387 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.691890 - 1.1s | ||
| 388 | +[CV] c1=0.489724053657197, c2=0.044922427709806804 ................... | ||
| 389 | +[CV] c1=0.489724053657197, c2=0.044922427709806804, score=0.656490 - 1.2s | ||
| 390 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735 ................. | ||
| 391 | +[CV] c1=0.037804502799856664, c2=0.17775310605580735, score=0.707931 - 1.2s | ||
| 392 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173 ................. | ||
| 393 | +[CV] c1=0.48021458727568206, c2=0.024520344430852173, score=0.710539 - 1.2s | ||
| 394 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801 ................... | ||
| 395 | +[CV] c1=1.1913664771508643, c2=0.02636126240604801, score=0.677417 - 1.2s | ||
| 396 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872 ................. | ||
| 397 | +[CV] c1=0.011396903498125098, c2=0.08331303274987872, score=0.866790 - 1.1s | ||
| 398 | +[CV] c1=0.389627350050321, c2=0.20541641674647737 .................... | ||
| 399 | +[CV] c1=0.389627350050321, c2=0.20541641674647737, score=0.877067 - 1.1s | ||
| 400 | +[CV] c1=0.478213957506215, c2=0.020477014457446593 ................... | ||
| 401 | +[CV] c1=0.478213957506215, c2=0.020477014457446593, score=0.793956 - 1.2s | ||
| 402 | +[CV] c1=0.585686407327112, c2=0.012901559348345326 ................... | ||
| 403 | +[CV] c1=0.585686407327112, c2=0.012901559348345326, score=0.852821 - 1.4s | ||
| 404 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753 ................. | ||
| 405 | +[CV] c1=0.32462532886586554, c2=0.018288220546846753, score=0.848001 - 1.3s | ||
| 406 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882 ................... | ||
| 407 | +[CV] c1=0.7414419018297659, c2=0.12193121091232882, score=0.853988 - 1.0s | ||
| 408 | +Training done in: 7.486107s | ||
| 409 | + Saving training model... | ||
| 410 | + Saving training model done in: 0.013334s | ||
| 411 | +********************************* | ||
| 412 | +Prediction done in: 0.023981s |
CRF/outputs/Run4_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.004035s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 word[:1] 1 | ||
| 27 | +9 word 1 | ||
| 28 | +10 isUpper False | ||
| 29 | +11 isLower False | ||
| 30 | +12 isGreek False | ||
| 31 | +13 isNumber True | ||
| 32 | +14 -1:word PQ | ||
| 33 | +--------------------------- FeaturesTest ----------------------------- | ||
| 34 | + 0 1 | ||
| 35 | +0 lemma delta-fnr | ||
| 36 | +1 postag NN | ||
| 37 | +2 -1:lemma _ | ||
| 38 | +3 -1:postag NN | ||
| 39 | +4 +1:lemma _ | ||
| 40 | +5 +1:postag CD | ||
| 41 | +6 hUpper False | ||
| 42 | +7 hLower False | ||
| 43 | +8 hGreek False | ||
| 44 | +9 symb True | ||
| 45 | +10 word[:1] d | ||
| 46 | +11 word[:2] de | ||
| 47 | +12 word delta-fnr | ||
| 48 | +13 isUpper False | ||
| 49 | +14 isLower True | ||
| 50 | +15 isGreek False | ||
| 51 | +16 isNumber False | ||
| 52 | +17 -1:word _ | ||
| 53 | +18 +1:word _ | ||
| 54 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 55 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432 .................. | ||
| 56 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.719482 - 1.7s | ||
| 57 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803 .................. | ||
| 58 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.964829 - 1.8s | ||
| 59 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
| 60 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.671893 - 1.4s | ||
| 61 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577 ................. | ||
| 62 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.860861 - 1.8s | ||
| 63 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 64 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.714313 - 1.7s | ||
| 65 | +[CV] c1=0.5522760556298829, c2=0.011764289096805257 .................. | ||
| 66 | +[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.932342 - 1.5s | ||
| 67 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803 .................. | ||
| 68 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.893986 - 1.6s | ||
| 69 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
| 70 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.850267 - 1.6s | ||
| 71 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577 ................. | ||
| 72 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.713686 - 1.4s | ||
| 73 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 74 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.728846 - 1.7s | ||
| 75 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432 .................. | ||
| 76 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.715320 - 1.7s | ||
| 77 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803 .................. | ||
| 78 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.854753 - 1.6s | ||
| 79 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
| 80 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.644709 - 1.7s | ||
| 81 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577 ................. | ||
| 82 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.868023 - 2.1s | ||
| 83 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 84 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.628257 - 1.6s | ||
| 85 | +[CV] c1=0.4078998263978875, c2=0.03823537952712818 ................... | ||
| 86 | +[CV] c1=0.4078998263978875, c2=0.03823537952712818, score=0.729114 - 1.5s | ||
| 87 | +[CV] c1=1.0979918753546847, c2=0.002918879102946894 .................. | ||
| 88 | +[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.805804 - 1.7s | ||
| 89 | +[CV] c1=1.9851987092826848, c2=0.05255571087688783 ................... | ||
| 90 | +[CV] c1=1.9851987092826848, c2=0.05255571087688783, score=0.630354 - 1.3s | ||
| 91 | +[CV] c1=0.7263916143048589, c2=0.031205799626709132 .................. | ||
| 92 | +[CV] c1=0.7263916143048589, c2=0.031205799626709132, score=0.714493 - 1.6s | ||
| 93 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 94 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.750968 - 1.8s | ||
| 95 | +[CV] c1=0.5522760556298829, c2=0.011764289096805257 .................. | ||
| 96 | +[CV] c1=0.5522760556298829, c2=0.011764289096805257, score=0.696002 - 1.5s | ||
| 97 | +[CV] c1=1.0979918753546847, c2=0.002918879102946894 .................. | ||
| 98 | +[CV] c1=1.0979918753546847, c2=0.002918879102946894, score=0.664975 - 1.4s | ||
| 99 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
| 100 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.745162 - 1.7s | ||
| 101 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577 ................. | ||
| 102 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.792078 - 1.8s | ||
| 103 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 104 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.947941 - 1.6s | ||
| 105 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432 .................. | ||
| 106 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.628257 - 1.4s | ||
| 107 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803 .................. | ||
| 108 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.718319 - 1.8s | ||
| 109 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
| 110 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325, score=0.855472 - 1.7s | ||
| 111 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577 ................. | ||
| 112 | +[CV] c1=0.30683200632675367, c2=0.019783947264900577, score=0.757924 - 1.8s | ||
| 113 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144 ................. | ||
| 114 | +[CV] c1=0.03158220752670695, c2=0.051210940198560144, score=0.885770 - 1.9s | ||
| 115 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432 .................. | ||
| 116 | +[CV] c1=0.07231471163871557, c2=0.09430964775259432, score=0.885770 - 1.8s | ||
| 117 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803 .................. | ||
| 118 | +[CV] c1=0.2858121257516539, c2=0.017143803593821803, score=0.708131 - 1.3s | ||
| 119 | +[CV] c1=1.6285175067140285, c2=0.06773142195214325 ................... | ||
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| 405 | +[CV] c1=0.10648945642165056, c2=0.015449511254995961 ................. | ||
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| 407 | +[CV] c1=0.8236049945299427, c2=0.15208965114284034 ................... | ||
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| 409 | +[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................ | ||
| 410 | +[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.872268 - 1.7s | ||
| 411 | +[CV] c1=1.3104946340308028, c2=0.016932301174739674 .................. | ||
| 412 | +[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.684029 - 1.6s | ||
| 413 | +[CV] c1=0.021441360234559073, c2=0.04563400559940925 ................. | ||
| 414 | +[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.891699 - 1.5s | ||
| 415 | +[CV] c1=0.10648945642165056, c2=0.015449511254995961 ................. | ||
| 416 | +[CV] c1=0.10648945642165056, c2=0.015449511254995961, score=0.792078 - 1.6s | ||
| 417 | +[CV] c1=0.8236049945299427, c2=0.15208965114284034 ................... | ||
| 418 | +[CV] c1=0.8236049945299427, c2=0.15208965114284034, score=0.925608 - 1.7s | ||
| 419 | +[CV] c1=0.046498819434789694, c2=0.007495861195002632 ................ | ||
| 420 | +[CV] c1=0.046498819434789694, c2=0.007495861195002632, score=0.870252 - 1.7s | ||
| 421 | +[CV] c1=1.3104946340308028, c2=0.016932301174739674 .................. | ||
| 422 | +[CV] c1=1.3104946340308028, c2=0.016932301174739674, score=0.871212 - 1.7s | ||
| 423 | +[CV] c1=0.021441360234559073, c2=0.04563400559940925 ................. | ||
| 424 | +[CV] c1=0.021441360234559073, c2=0.04563400559940925, score=0.855704 - 1.4s | ||
| 425 | +Training done in: 11.278545s | ||
| 426 | + Saving training model... | ||
| 427 | + Saving training model done in: 0.014307s | ||
| 428 | +********************************* | ||
| 429 | +Prediction done in: 0.041099s |
CRF/outputs/Run5_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003781s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.6194603776098887, c2=0.003983838476166578 .................. | ||
| 19 | +[CV] c1=0.6194603776098887, c2=0.003983838476166578, score=0.656490 - 1.1s | ||
| 20 | +[CV] c1=1.529507873115847, c2=0.024136783344165424 ................... | ||
| 21 | +[CV] c1=1.529507873115847, c2=0.024136783344165424, score=0.643620 - 1.1s | ||
| 22 | +[CV] c1=0.4486050985597108, c2=0.00923136182458732 ................... | ||
| 23 | +[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.710539 - 1.3s | ||
| 24 | +[CV] c1=0.39114608628354247, c2=0.04029658321961293 .................. | ||
| 25 | +[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.899703 - 1.3s | ||
| 26 | +[CV] c1=0.02824756371284651, c2=0.0335948035118798 ................... | ||
| 27 | +[CV] c1=0.02824756371284651, c2=0.0335948035118798, score=0.890667 - 1.1s | ||
| 28 | +[CV] c1=0.25969741666753743, c2=0.027938172584771492 ................. | ||
| 29 | +[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.784613 - 1.2s | ||
| 30 | +[CV] c1=0.4878310757485807, c2=0.05686345202582919 ................... | ||
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| 32 | +[CV] c1=0.06596113672627639, c2=0.005613954965247502 ................. | ||
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| 34 | +[CV] c1=0.2467287269984389, c2=0.00376365828037806 ................... | ||
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| 46 | +[CV] c1=0.20710070358327326, c2=0.014282330320157044 ................. | ||
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| 48 | +[CV] c1=0.4128620881801901, c2=0.04225367471784858 ................... | ||
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| 50 | +[CV] c1=0.2505843507627238, c2=0.02792808991248863 ................... | ||
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| 52 | +[CV] c1=0.3926811460995468, c2=0.0013244367466887003 ................. | ||
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| 54 | +[CV] c1=0.2467287269984389, c2=0.00376365828037806 ................... | ||
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| 56 | +[CV] c1=0.02824756371284651, c2=0.0335948035118798 ................... | ||
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| 58 | +[CV] c1=0.25969741666753743, c2=0.027938172584771492 ................. | ||
| 59 | +[CV] c1=0.25969741666753743, c2=0.027938172584771492, score=0.679766 - 1.0s | ||
| 60 | +[CV] c1=0.4878310757485807, c2=0.05686345202582919 ................... | ||
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| 62 | +[CV] c1=0.06596113672627639, c2=0.005613954965247502 ................. | ||
| 63 | +[CV] c1=0.06596113672627639, c2=0.005613954965247502, score=0.866790 - 1.1s | ||
| 64 | +[CV] c1=0.2467287269984389, c2=0.00376365828037806 ................... | ||
| 65 | +[CV] c1=0.2467287269984389, c2=0.00376365828037806, score=0.847745 - 1.2s | ||
| 66 | +[CV] c1=0.20710070358327326, c2=0.014282330320157044 ................. | ||
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| 388 | +[CV] c1=1.1631641707070273, c2=0.023763063982595384 .................. | ||
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| 392 | +[CV] c1=0.4486050985597108, c2=0.00923136182458732 ................... | ||
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| 394 | +[CV] c1=0.39114608628354247, c2=0.04029658321961293 .................. | ||
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| 396 | +[CV] c1=0.07271681477281164, c2=0.02046865622687442 .................. | ||
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| 398 | +[CV] c1=1.1631641707070273, c2=0.023763063982595384 .................. | ||
| 399 | +[CV] c1=1.1631641707070273, c2=0.023763063982595384, score=0.548196 - 1.0s | ||
| 400 | +[CV] c1=0.2526516086542792, c2=0.00238624899782224 ................... | ||
| 401 | +[CV] c1=0.2526516086542792, c2=0.00238624899782224, score=0.899703 - 1.1s | ||
| 402 | +[CV] c1=0.4486050985597108, c2=0.00923136182458732 ................... | ||
| 403 | +[CV] c1=0.4486050985597108, c2=0.00923136182458732, score=0.556932 - 0.9s | ||
| 404 | +[CV] c1=0.39114608628354247, c2=0.04029658321961293 .................. | ||
| 405 | +[CV] c1=0.39114608628354247, c2=0.04029658321961293, score=0.679766 - 1.1s | ||
| 406 | +[CV] c1=0.07271681477281164, c2=0.02046865622687442 .................. | ||
| 407 | +[CV] c1=0.07271681477281164, c2=0.02046865622687442, score=0.720311 - 0.9s | ||
| 408 | +Training done in: 7.364966s | ||
| 409 | + Saving training model... | ||
| 410 | + Saving training model done in: 0.014886s | ||
| 411 | +********************************* | ||
| 412 | +Prediction done in: 0.025883s |
CRF/outputs/Run5_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003701s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 -2:lemma δsoxs | ||
| 23 | +5 -2:postag NN | ||
| 24 | +--------------------------- FeaturesTest ----------------------------- | ||
| 25 | + 0 1 | ||
| 26 | +0 lemma delta-fnr | ||
| 27 | +1 postag NN | ||
| 28 | +2 -1:lemma _ | ||
| 29 | +3 -1:postag NN | ||
| 30 | +4 +1:lemma _ | ||
| 31 | +5 +1:postag CD | ||
| 32 | +6 -2:lemma affyexp | ||
| 33 | +7 -2:postag JJ | ||
| 34 | +8 +2:lemma glucose | ||
| 35 | +9 +2:postag NN | ||
| 36 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 37 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363 ................. | ||
| 38 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.765174 - 1.3s | ||
| 39 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928 ................. | ||
| 40 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.873237 - 1.3s | ||
| 41 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
| 42 | +[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.849739 - 1.3s | ||
| 43 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
| 44 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.850404 - 1.5s | ||
| 45 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
| 46 | +[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.825973 - 1.4s | ||
| 47 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
| 48 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306, score=0.713945 - 1.5s | ||
| 49 | +[CV] c1=0.21956205153360858, c2=0.009541738536313635 ................. | ||
| 50 | +[CV] c1=0.21956205153360858, c2=0.009541738536313635, score=0.930099 - 1.4s | ||
| 51 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
| 52 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.880074 - 1.5s | ||
| 53 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
| 54 | +[CV] c1=0.927177018037934, c2=0.023269220013262686, score=0.602692 - 1.2s | ||
| 55 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
| 56 | +[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.741134 - 1.3s | ||
| 57 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
| 58 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.814966 - 1.3s | ||
| 59 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
| 60 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.846366 - 1.3s | ||
| 61 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
| 62 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.946893 - 1.3s | ||
| 63 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
| 64 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.713945 - 1.2s | ||
| 65 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
| 66 | +[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.817898 - 1.5s | ||
| 67 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
| 68 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.783004 - 1.3s | ||
| 69 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
| 70 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.883871 - 1.5s | ||
| 71 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
| 72 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.617261 - 1.2s | ||
| 73 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
| 74 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663, score=0.580603 - 0.9s | ||
| 75 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
| 76 | +[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.705309 - 1.5s | ||
| 77 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
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| 79 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
| 80 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625, score=0.764892 - 1.3s | ||
| 81 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
| 82 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689, score=0.883871 - 1.3s | ||
| 83 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
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| 85 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
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| 88 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.860074 - 1.3s | ||
| 89 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
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| 91 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
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| 93 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
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| 95 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 101 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
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| 103 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
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| 107 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
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| 109 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
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| 111 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
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| 113 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 115 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 123 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 125 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 129 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 133 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 135 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
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| 139 | +[CV] c1=0.6555816084765733, c2=0.022533357743075463 .................. | ||
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| 145 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
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| 149 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 159 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 165 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 169 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 173 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
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| 179 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 183 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 185 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
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| 189 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 195 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
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| 203 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 205 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
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| 209 | +[CV] c1=0.6555816084765733, c2=0.022533357743075463 .................. | ||
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| 211 | +[CV] c1=0.5243479435689085, c2=0.020264421529990553 .................. | ||
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| 213 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
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| 217 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
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| 221 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
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| 223 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363 ................. | ||
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| 225 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928 ................. | ||
| 226 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.631124 - 1.2s | ||
| 227 | +[CV] c1=0.21956205153360858, c2=0.009541738536313635 ................. | ||
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| 229 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 231 | +[CV] c1=0.7489529455784063, c2=0.07012128593942421 ................... | ||
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| 233 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
| 234 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.868690 - 1.5s | ||
| 235 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
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| 237 | +[CV] c1=0.21956205153360858, c2=0.009541738536313635 ................. | ||
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| 239 | +[CV] c1=0.6555816084765733, c2=0.022533357743075463 .................. | ||
| 240 | +[CV] c1=0.6555816084765733, c2=0.022533357743075463, score=0.721610 - 1.3s | ||
| 241 | +[CV] c1=0.5243479435689085, c2=0.020264421529990553 .................. | ||
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| 243 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363 ................. | ||
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| 245 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
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| 247 | +[CV] c1=0.17774701316807118, c2=0.012695982200445625 ................. | ||
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| 249 | +[CV] c1=0.10611954839898095, c2=0.006346156532999689 ................. | ||
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| 253 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
| 254 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625, score=0.718403 - 1.3s | ||
| 255 | +[CV] c1=0.6705921332964635, c2=0.014427642144010306 .................. | ||
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| 259 | +[CV] c1=0.6555816084765733, c2=0.022533357743075463 .................. | ||
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| 261 | +[CV] c1=0.5243479435689085, c2=0.020264421529990553 .................. | ||
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| 267 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
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| 269 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
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| 273 | +[CV] c1=0.7356533023470947, c2=0.0013731489455130663 ................. | ||
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| 275 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 279 | +[CV] c1=1.0784241377074688, c2=0.041059790429751976 .................. | ||
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| 281 | +[CV] c1=0.5243479435689085, c2=0.020264421529990553 .................. | ||
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| 283 | +[CV] c1=0.48638772360527766, c2=0.06914443790613625 .................. | ||
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| 345 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
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| 349 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
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| 359 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
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| 379 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
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| 381 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
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| 383 | +[CV] c1=0.7156254494091757, c2=0.04252905244564888 ................... | ||
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| 385 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
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| 387 | +[CV] c1=0.061878622473100685, c2=0.008830927560874847 ................ | ||
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| 393 | +[CV] c1=0.7489529455784063, c2=0.07012128593942421 ................... | ||
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| 405 | +[CV] c1=0.927177018037934, c2=0.023269220013262686 ................... | ||
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| 407 | +[CV] c1=1.439077844699842, c2=0.02774426387487829 .................... | ||
| 408 | +[CV] c1=1.439077844699842, c2=0.02774426387487829, score=0.518811 - 1.1s | ||
| 409 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906 ................. | ||
| 410 | +[CV] c1=0.3918550763541644, c2=0.0010997783061468906, score=0.660872 - 1.2s | ||
| 411 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
| 412 | +[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.589040 - 1.2s | ||
| 413 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
| 414 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.777342 - 1.3s | ||
| 415 | +[CV] c1=0.7156254494091757, c2=0.04252905244564888 ................... | ||
| 416 | +[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.841965 - 1.1s | ||
| 417 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363 ................. | ||
| 418 | +[CV] c1=0.14009357256950483, c2=0.009314873469817363, score=0.855731 - 1.3s | ||
| 419 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928 ................. | ||
| 420 | +[CV] c1=0.5652943015138516, c2=0.0037589652831553928, score=0.860160 - 1.2s | ||
| 421 | +[CV] c1=0.676799569030537, c2=0.05862110387649719 .................... | ||
| 422 | +[CV] c1=0.676799569030537, c2=0.05862110387649719, score=0.612772 - 1.3s | ||
| 423 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254 .................. | ||
| 424 | +[CV] c1=0.2644150178675066, c2=0.046160424707653254, score=0.770299 - 1.5s | ||
| 425 | +[CV] c1=0.7156254494091757, c2=0.04252905244564888 ................... | ||
| 426 | +[CV] c1=0.7156254494091757, c2=0.04252905244564888, score=0.776162 - 1.0s | ||
| 427 | +Training done in: 8.656537s | ||
| 428 | + Saving training model... | ||
| 429 | + Saving training model done in: 0.013108s | ||
| 430 | +********************************* | ||
| 431 | +Prediction done in: 0.028636s |
CRF/outputs/Run6_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003860s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 19 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.903565 - 1.2s | ||
| 20 | +[CV] c1=0.020829028765021226, c2=0.330913244342466 ................... | ||
| 21 | +[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.630985 - 1.0s | ||
| 22 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 23 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.559014 - 0.9s | ||
| 24 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 25 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.592492 - 1.1s | ||
| 26 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 27 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.582068 - 1.1s | ||
| 28 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 29 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.743125 - 1.0s | ||
| 30 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 31 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.866790 - 1.2s | ||
| 32 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 33 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.825330 - 1.1s | ||
| 34 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 35 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.596309 - 1.1s | ||
| 36 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 37 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.789900 - 1.2s | ||
| 38 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822 ................... | ||
| 39 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.603251 - 1.0s | ||
| 40 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 41 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.920970 - 1.1s | ||
| 42 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 43 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.870586 - 1.1s | ||
| 44 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 45 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.660504 - 1.1s | ||
| 46 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 47 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.605840 - 1.1s | ||
| 48 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 49 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.865533 - 1.2s | ||
| 50 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 51 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.906853 - 1.1s | ||
| 52 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
| 53 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.647745 - 1.1s | ||
| 54 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349 .................... | ||
| 55 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.649654 - 1.0s | ||
| 56 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 57 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.824341 - 1.1s | ||
| 58 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 59 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.701461 - 1.0s | ||
| 60 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 61 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.840539 - 1.2s | ||
| 62 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 63 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.712560 - 1.2s | ||
| 64 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 65 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.718275 - 1.1s | ||
| 66 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 67 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.672745 - 1.1s | ||
| 68 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822 ................... | ||
| 69 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.881938 - 1.1s | ||
| 70 | +[CV] c1=0.020829028765021226, c2=0.330913244342466 ................... | ||
| 71 | +[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.703305 - 1.1s | ||
| 72 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
| 73 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.673633 - 1.0s | ||
| 74 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 75 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.568556 - 1.2s | ||
| 76 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 77 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.518602 - 1.0s | ||
| 78 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 79 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.659253 - 1.0s | ||
| 80 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 81 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.720311 - 1.2s | ||
| 82 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 83 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.677417 - 1.1s | ||
| 84 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 85 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.683547 - 1.2s | ||
| 86 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 87 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.556540 - 1.2s | ||
| 88 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 89 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.753693 - 1.2s | ||
| 90 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 91 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.601571 - 0.9s | ||
| 92 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 93 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.647745 - 0.9s | ||
| 94 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 95 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.582162 - 1.2s | ||
| 96 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 97 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.643620 - 1.2s | ||
| 98 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 99 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.550050 - 0.9s | ||
| 100 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 101 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.654823 - 1.2s | ||
| 102 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 103 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.678288 - 1.1s | ||
| 104 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 105 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.507094 - 1.1s | ||
| 106 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437 ................... | ||
| 107 | +[CV] c1=1.4864633814895774, c2=0.07443280995437437, score=0.614085 - 1.3s | ||
| 108 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 109 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.883954 - 1.2s | ||
| 110 | +[CV] c1=0.020829028765021226, c2=0.330913244342466 ................... | ||
| 111 | +[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.710369 - 1.1s | ||
| 112 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
| 113 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.686713 - 1.1s | ||
| 114 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349 .................... | ||
| 115 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.594837 - 0.9s | ||
| 116 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 117 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.866790 - 1.1s | ||
| 118 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822 ................... | ||
| 119 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822, score=0.740663 - 1.1s | ||
| 120 | +[CV] c1=0.020829028765021226, c2=0.330913244342466 ................... | ||
| 121 | +[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.770846 - 1.1s | ||
| 122 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
| 123 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.677417 - 1.1s | ||
| 124 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349 .................... | ||
| 125 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.848001 - 1.1s | ||
| 126 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 127 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.935386 - 1.0s | ||
| 128 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333 ................... | ||
| 129 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.899703 - 1.2s | ||
| 130 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................ | ||
| 131 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.608985 - 0.9s | ||
| 132 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
| 133 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386, score=0.548196 - 0.9s | ||
| 134 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349 .................... | ||
| 135 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.814619 - 1.3s | ||
| 136 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 137 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.603356 - 0.9s | ||
| 138 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 139 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.843338 - 1.1s | ||
| 140 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 141 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.946561 - 1.1s | ||
| 142 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 143 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.698982 - 1.1s | ||
| 144 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349 .................... | ||
| 145 | +[CV] c1=0.1266383951793103, c2=0.0393032467121349, score=0.720311 - 1.1s | ||
| 146 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 147 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.652192 - 1.2s | ||
| 148 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263 ................. | ||
| 149 | +[CV] c1=0.7431164639270406, c2=0.0027998889877337263, score=0.708065 - 1.1s | ||
| 150 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524 ................... | ||
| 151 | +[CV] c1=0.09511707500453928, c2=0.0519939941697524, score=0.766835 - 1.1s | ||
| 152 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633 ................... | ||
| 153 | +[CV] c1=1.1133560080812872, c2=0.03524217248955633, score=0.856715 - 1.1s | ||
| 154 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973 .................. | ||
| 155 | +[CV] c1=2.2946346184092543, c2=0.026838185424639973, score=0.609338 - 1.2s | ||
| 156 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 157 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.723492 - 1.2s | ||
| 158 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333 ................... | ||
| 159 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.721334 - 1.3s | ||
| 160 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................ | ||
| 161 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.878773 - 1.1s | ||
| 162 | +[CV] c1=0.7225500746993299, c2=0.17031685283847245 ................... | ||
| 163 | +[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.568962 - 1.0s | ||
| 164 | +[CV] c1=2.0488638507950374, c2=0.05830217300206339 ................... | ||
| 165 | +[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.580569 - 1.0s | ||
| 166 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296 ................. | ||
| 167 | +[CV] c1=0.03116962391669711, c2=0.034902897212510296, score=0.920970 - 1.0s | ||
| 168 | +[CV] c1=0.1614939954077374, c2=0.06205814047571822 ................... | ||
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| 170 | +[CV] c1=0.020829028765021226, c2=0.330913244342466 ................... | ||
| 171 | +[CV] c1=0.020829028765021226, c2=0.330913244342466, score=0.848001 - 1.1s | ||
| 172 | +[CV] c1=1.1533562821101506, c2=0.019354995709139386 .................. | ||
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| 355 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.652192 - 1.3s | ||
| 356 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375 .................. | ||
| 357 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.875991 - 0.9s | ||
| 358 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408 ................... | ||
| 359 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.575822 - 0.9s | ||
| 360 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894 ................. | ||
| 361 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.713945 - 1.1s | ||
| 362 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602 .................. | ||
| 363 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.723537 - 1.1s | ||
| 364 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126 .................. | ||
| 365 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.735257 - 1.2s | ||
| 366 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375 .................. | ||
| 367 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.906853 - 0.9s | ||
| 368 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408 ................... | ||
| 369 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.770586 - 1.1s | ||
| 370 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894 ................. | ||
| 371 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.693714 - 1.2s | ||
| 372 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602 .................. | ||
| 373 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.667190 - 1.1s | ||
| 374 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126 .................. | ||
| 375 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.906853 - 1.1s | ||
| 376 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375 .................. | ||
| 377 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.607039 - 0.8s | ||
| 378 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408 ................... | ||
| 379 | +[CV] c1=0.3213690128955612, c2=0.03898256391447408, score=0.867217 - 1.1s | ||
| 380 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894 ................. | ||
| 381 | +[CV] c1=0.21271540606230951, c2=0.030620357980156894, score=0.814619 - 1.1s | ||
| 382 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602 .................. | ||
| 383 | +[CV] c1=1.6722766965579237, c2=0.013291004231457602, score=0.607625 - 1.1s | ||
| 384 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126 .................. | ||
| 385 | +[CV] c1=0.08475757164945485, c2=0.13819696066777126, score=0.680867 - 1.1s | ||
| 386 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375 .................. | ||
| 387 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.848001 - 1.0s | ||
| 388 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333 ................... | ||
| 389 | +[CV] c1=0.4084834008911277, c2=0.06619217123115333, score=0.673541 - 1.1s | ||
| 390 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602 ................ | ||
| 391 | +[CV] c1=0.0033333355799007253, c2=0.01971173429048602, score=0.866790 - 1.1s | ||
| 392 | +[CV] c1=0.7225500746993299, c2=0.17031685283847245 ................... | ||
| 393 | +[CV] c1=0.7225500746993299, c2=0.17031685283847245, score=0.852672 - 1.1s | ||
| 394 | +[CV] c1=2.0488638507950374, c2=0.05830217300206339 ................... | ||
| 395 | +[CV] c1=2.0488638507950374, c2=0.05830217300206339, score=0.778713 - 1.2s | ||
| 396 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375 .................. | ||
| 397 | +[CV] c1=0.001922394963124772, c2=0.1166032351837375, score=0.724290 - 1.1s | ||
| 398 | +Training done in: 7.322848s | ||
| 399 | + Saving training model... | ||
| 400 | + Saving training model done in: 0.013721s | ||
| 401 | +********************************* | ||
| 402 | +Prediction done in: 0.023824s |
CRF/outputs/Run6_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003824s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 word[:1] 1 | ||
| 27 | +9 -2:lemma δsoxs | ||
| 28 | +10 -2:postag NN | ||
| 29 | +--------------------------- FeaturesTest ----------------------------- | ||
| 30 | + 0 1 | ||
| 31 | +0 lemma delta-fnr | ||
| 32 | +1 postag NN | ||
| 33 | +2 -1:lemma _ | ||
| 34 | +3 -1:postag NN | ||
| 35 | +4 +1:lemma _ | ||
| 36 | +5 +1:postag CD | ||
| 37 | +6 hUpper False | ||
| 38 | +7 hLower False | ||
| 39 | +8 hGreek False | ||
| 40 | +9 symb True | ||
| 41 | +10 word[:1] d | ||
| 42 | +11 word[:2] de | ||
| 43 | +12 -2:lemma affyexp | ||
| 44 | +13 -2:postag JJ | ||
| 45 | +14 +2:lemma glucose | ||
| 46 | +15 +2:postag NN | ||
| 47 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 48 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924 ................... | ||
| 49 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.748989 - 1.5s | ||
| 50 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806 .................. | ||
| 51 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.688607 - 1.2s | ||
| 52 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 53 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.705446 - 1.3s | ||
| 54 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 55 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.844579 - 1.6s | ||
| 56 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 57 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.682226 - 1.5s | ||
| 58 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815 ................. | ||
| 59 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.701013 - 1.3s | ||
| 60 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005 .................. | ||
| 61 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.895566 - 1.8s | ||
| 62 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 63 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.719074 - 1.7s | ||
| 64 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 65 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.724487 - 1.6s | ||
| 66 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575 .................. | ||
| 67 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.868519 - 1.1s | ||
| 68 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806 .................. | ||
| 69 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.682226 - 1.4s | ||
| 70 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 71 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.947516 - 1.6s | ||
| 72 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 73 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.933155 - 1.6s | ||
| 74 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 75 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.727054 - 1.3s | ||
| 76 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924 ................... | ||
| 77 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.917847 - 1.3s | ||
| 78 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 79 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.738970 - 1.3s | ||
| 80 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 81 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.907093 - 1.6s | ||
| 82 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 83 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.868659 - 1.7s | ||
| 84 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 85 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.780640 - 1.5s | ||
| 86 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
| 87 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.683958 - 1.4s | ||
| 88 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 89 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.705265 - 1.4s | ||
| 90 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 91 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.732294 - 1.6s | ||
| 92 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
| 93 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.931297 - 1.9s | ||
| 94 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 95 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.878329 - 1.6s | ||
| 96 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
| 97 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.773191 - 1.4s | ||
| 98 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 99 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.885638 - 1.6s | ||
| 100 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 101 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.891699 - 1.7s | ||
| 102 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 103 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.673861 - 1.6s | ||
| 104 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 105 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.842875 - 1.7s | ||
| 106 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924 ................... | ||
| 107 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.868519 - 1.3s | ||
| 108 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 109 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.759154 - 1.4s | ||
| 110 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 111 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.796438 - 1.5s | ||
| 112 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 113 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.880312 - 1.8s | ||
| 114 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 115 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.734892 - 1.6s | ||
| 116 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575 .................. | ||
| 117 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.660504 - 1.1s | ||
| 118 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 119 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.748989 - 1.6s | ||
| 120 | +[CV] c1=0.0027865899296892344, c2=0.0322630560189459 ................. | ||
| 121 | +[CV] c1=0.0027865899296892344, c2=0.0322630560189459, score=0.688077 - 1.4s | ||
| 122 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 123 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.752420 - 1.6s | ||
| 124 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 125 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.754344 - 1.6s | ||
| 126 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924 ................... | ||
| 127 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.698897 - 1.1s | ||
| 128 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 129 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.914825 - 1.6s | ||
| 130 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 131 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.911961 - 1.6s | ||
| 132 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 133 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.796825 - 1.6s | ||
| 134 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 135 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.885638 - 1.7s | ||
| 136 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575 .................. | ||
| 137 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.704835 - 1.3s | ||
| 138 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412 .................. | ||
| 139 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412, score=0.648856 - 1.5s | ||
| 140 | +[CV] c1=0.0027865899296892344, c2=0.0322630560189459 ................. | ||
| 141 | +[CV] c1=0.0027865899296892344, c2=0.0322630560189459, score=0.721111 - 1.5s | ||
| 142 | +[CV] c1=0.35338694963813927, c2=0.027153986749367698 ................. | ||
| 143 | +[CV] c1=0.35338694963813927, c2=0.027153986749367698, score=0.786586 - 1.5s | ||
| 144 | +[CV] c1=0.07859831333888312, c2=0.07646449848130295 .................. | ||
| 145 | +[CV] c1=0.07859831333888312, c2=0.07646449848130295, score=0.653316 - 1.5s | ||
| 146 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
| 147 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.673792 - 1.4s | ||
| 148 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534 ................. | ||
| 149 | +[CV] c1=0.4188873236253328, c2=0.0026616054692428534, score=0.784018 - 1.5s | ||
| 150 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333 .................. | ||
| 151 | +[CV] c1=0.15577693298267048, c2=0.06637448911598333, score=0.746614 - 1.7s | ||
| 152 | +[CV] c1=0.823900513809091, c2=0.0387534873299443 ..................... | ||
| 153 | +[CV] c1=0.823900513809091, c2=0.0387534873299443, score=0.700287 - 1.5s | ||
| 154 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216 .................. | ||
| 155 | +[CV] c1=0.6399264634452653, c2=0.014870218135147216, score=0.940069 - 1.6s | ||
| 156 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575 .................. | ||
| 157 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575, score=0.891699 - 1.4s | ||
| 158 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412 .................. | ||
| 159 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412, score=0.730917 - 1.6s | ||
| 160 | +[CV] c1=0.5229213398180802, c2=0.05988470409107292 ................... | ||
| 161 | +[CV] c1=0.5229213398180802, c2=0.05988470409107292, score=0.682226 - 1.4s | ||
| 162 | +[CV] c1=0.35338694963813927, c2=0.027153986749367698 ................. | ||
| 163 | +[CV] c1=0.35338694963813927, c2=0.027153986749367698, score=0.759154 - 1.8s | ||
| 164 | +[CV] c1=0.07859831333888312, c2=0.07646449848130295 .................. | ||
| 165 | +[CV] c1=0.07859831333888312, c2=0.07646449848130295, score=0.713594 - 1.2s | ||
| 166 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
| 167 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682, score=0.893607 - 1.6s | ||
| 168 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806 .................. | ||
| 169 | +[CV] c1=0.5185417642698361, c2=0.053008807244735806, score=0.923873 - 1.6s | ||
| 170 | +[CV] c1=0.0027865899296892344, c2=0.0322630560189459 ................. | ||
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| 352 | +[CV] c1=1.0068963881008774, c2=0.0209795411094058 .................... | ||
| 353 | +[CV] c1=1.0068963881008774, c2=0.0209795411094058, score=0.866025 - 1.7s | ||
| 354 | +[CV] c1=0.031180803180743573, c2=0.07896645089543503 ................. | ||
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| 356 | +[CV] c1=0.11430921774270934, c2=0.06174595493921575 .................. | ||
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| 358 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412 .................. | ||
| 359 | +[CV] c1=0.25383138714597037, c2=0.04263753154943412, score=0.933576 - 1.6s | ||
| 360 | +[CV] c1=0.5229213398180802, c2=0.05988470409107292 ................... | ||
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| 362 | +[CV] c1=1.0068963881008774, c2=0.0209795411094058 .................... | ||
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| 364 | +[CV] c1=0.031180803180743573, c2=0.07896645089543503 ................. | ||
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| 366 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815 ................. | ||
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| 370 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
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| 372 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................ | ||
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| 374 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161 ................... | ||
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| 376 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
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| 386 | +[CV] c1=1.3873487379708354, c2=0.05280678047492682 ................... | ||
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| 400 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005 .................. | ||
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| 402 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
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| 404 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................ | ||
| 405 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.914459 - 1.5s | ||
| 406 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161 ................... | ||
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| 408 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815 ................. | ||
| 409 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.891699 - 1.8s | ||
| 410 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005 .................. | ||
| 411 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.759154 - 1.5s | ||
| 412 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
| 413 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.881296 - 1.5s | ||
| 414 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................ | ||
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| 416 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161 ................... | ||
| 417 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.895584 - 1.4s | ||
| 418 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924 ................... | ||
| 419 | +[CV] c1=0.2615074589465166, c2=0.00276705652339924, score=0.933576 - 1.9s | ||
| 420 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005 .................. | ||
| 421 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.727640 - 1.7s | ||
| 422 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
| 423 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.894300 - 1.7s | ||
| 424 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................ | ||
| 425 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.903099 - 1.7s | ||
| 426 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161 ................... | ||
| 427 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.759154 - 1.2s | ||
| 428 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815 ................. | ||
| 429 | +[CV] c1=0.12876611002706792, c2=0.005687634151887815, score=0.914459 - 1.6s | ||
| 430 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005 .................. | ||
| 431 | +[CV] c1=0.4343684628584727, c2=0.035865115766266005, score=0.926812 - 1.5s | ||
| 432 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114 ................... | ||
| 433 | +[CV] c1=0.4187966865740437, c2=0.19166197167501114, score=0.855051 - 1.6s | ||
| 434 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571 ................ | ||
| 435 | +[CV] c1=0.010635150805068118, c2=0.013559125772358571, score=0.886041 - 1.6s | ||
| 436 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161 ................... | ||
| 437 | +[CV] c1=0.5348883068759939, c2=0.00832448452340161, score=0.933155 - 1.2s | ||
| 438 | +Training done in: 10.407644s | ||
| 439 | + Saving training model... | ||
| 440 | + Saving training model done in: 0.013260s | ||
| 441 | +********************************* | ||
| 442 | +Prediction done in: 0.035441s |
CRF/outputs/Run7_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003661s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804 .................. | ||
| 19 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.568777 - 0.8s | ||
| 20 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 21 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.761418 - 1.3s | ||
| 22 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 23 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.815463 - 1.1s | ||
| 24 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 25 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.761418 - 1.1s | ||
| 26 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 27 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.753693 - 1.1s | ||
| 28 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804 .................. | ||
| 29 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.651934 - 1.0s | ||
| 30 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 31 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.789190 - 1.2s | ||
| 32 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 33 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.558164 - 0.9s | ||
| 34 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 35 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.860729 - 1.2s | ||
| 36 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 37 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.794740 - 1.1s | ||
| 38 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622 ................. | ||
| 39 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.866790 - 0.8s | ||
| 40 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 41 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.666440 - 1.0s | ||
| 42 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 43 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.691890 - 1.0s | ||
| 44 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 45 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.824341 - 1.2s | ||
| 46 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 47 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.694072 - 1.2s | ||
| 48 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 49 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.761418 - 1.1s | ||
| 50 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 51 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.662630 - 1.3s | ||
| 52 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 53 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.703150 - 1.2s | ||
| 54 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 55 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.659253 - 1.0s | ||
| 56 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978 ................... | ||
| 57 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.659121 - 1.0s | ||
| 58 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 59 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.538621 - 1.0s | ||
| 60 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 61 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.712560 - 1.1s | ||
| 62 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 63 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.920970 - 1.1s | ||
| 64 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 65 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.852821 - 1.2s | ||
| 66 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622 ................. | ||
| 67 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.652192 - 0.8s | ||
| 68 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 69 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.716266 - 1.2s | ||
| 70 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 71 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.716676 - 1.2s | ||
| 72 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 73 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.867889 - 1.1s | ||
| 74 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 75 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.739174 - 1.2s | ||
| 76 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622 ................. | ||
| 77 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.723492 - 1.0s | ||
| 78 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678 ................. | ||
| 79 | +[CV] c1=0.6043003012819512, c2=0.0016246066449729678, score=0.857493 - 1.2s | ||
| 80 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071 ................... | ||
| 81 | +[CV] c1=0.8830586244748654, c2=0.08016526354894071, score=0.826261 - 1.3s | ||
| 82 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 83 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.553248 - 1.1s | ||
| 84 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 85 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.561630 - 1.2s | ||
| 86 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622 ................. | ||
| 87 | +[CV] c1=0.03962800005233316, c2=0.022576612705236622, score=0.923613 - 1.2s | ||
| 88 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238 ................. | ||
| 89 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.843407 - 1.1s | ||
| 90 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673 .................. | ||
| 91 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.656999 - 1.0s | ||
| 92 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 93 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.899703 - 1.1s | ||
| 94 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104 .................. | ||
| 95 | +[CV] c1=0.7882460794764874, c2=0.008314409656759104, score=0.891760 - 1.2s | ||
| 96 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804 .................. | ||
| 97 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.844400 - 1.1s | ||
| 98 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238 ................. | ||
| 99 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.920970 - 1.2s | ||
| 100 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673 .................. | ||
| 101 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.555648 - 0.9s | ||
| 102 | +[CV] c1=2.2502498485352547, c2=0.014818926001867778 .................. | ||
| 103 | +[CV] c1=2.2502498485352547, c2=0.014818926001867778, score=0.588673 - 1.2s | ||
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| 285 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.724515 - 0.9s | ||
| 286 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978 ................... | ||
| 287 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.912680 - 1.2s | ||
| 288 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 289 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.643620 - 1.1s | ||
| 290 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 291 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.643620 - 1.1s | ||
| 292 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 293 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.654823 - 1.0s | ||
| 294 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646 ................... | ||
| 295 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.892456 - 1.0s | ||
| 296 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 297 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.679766 - 1.0s | ||
| 298 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265 .................. | ||
| 299 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.741434 - 1.2s | ||
| 300 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028 ................... | ||
| 301 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.729308 - 1.1s | ||
| 302 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924 .................. | ||
| 303 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.912680 - 1.1s | ||
| 304 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646 ................... | ||
| 305 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.674703 - 1.1s | ||
| 306 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 307 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.920970 - 1.1s | ||
| 308 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 309 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.723537 - 1.3s | ||
| 310 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 311 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.682607 - 1.2s | ||
| 312 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 313 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.906853 - 1.1s | ||
| 314 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 315 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.654817 - 0.7s | ||
| 316 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 317 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.710539 - 1.1s | ||
| 318 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265 .................. | ||
| 319 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.598446 - 1.0s | ||
| 320 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028 ................... | ||
| 321 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.761818 - 1.2s | ||
| 322 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924 .................. | ||
| 323 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.718872 - 1.1s | ||
| 324 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646 ................... | ||
| 325 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.575917 - 1.0s | ||
| 326 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804 .................. | ||
| 327 | +[CV] c1=0.8576127193843588, c2=0.011655958946285804, score=0.836651 - 1.1s | ||
| 328 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238 ................. | ||
| 329 | +[CV] c1=0.18334620784152844, c2=0.008065728975440238, score=0.741434 - 1.2s | ||
| 330 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673 .................. | ||
| 331 | +[CV] c1=0.9896982442127485, c2=0.029349684897034673, score=0.870586 - 1.3s | ||
| 332 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924 .................. | ||
| 333 | +[CV] c1=0.7431358277276424, c2=0.011105476280036924, score=0.753693 - 1.1s | ||
| 334 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646 ................... | ||
| 335 | +[CV] c1=0.2936978694984962, c2=0.18231632927233646, score=0.717219 - 1.1s | ||
| 336 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 337 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.899703 - 1.3s | ||
| 338 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 339 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.517508 - 0.9s | ||
| 340 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 341 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.788076 - 1.2s | ||
| 342 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 343 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.877650 - 1.2s | ||
| 344 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 345 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.935386 - 0.9s | ||
| 346 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 347 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.841313 - 1.2s | ||
| 348 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 349 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.673654 - 1.3s | ||
| 350 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 351 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.518602 - 1.0s | ||
| 352 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 353 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.654694 - 1.2s | ||
| 354 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 355 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.741434 - 0.9s | ||
| 356 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 357 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.863440 - 1.1s | ||
| 358 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 359 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.789900 - 1.2s | ||
| 360 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 361 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.698163 - 1.1s | ||
| 362 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 363 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.730124 - 1.0s | ||
| 364 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 365 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.664655 - 1.0s | ||
| 366 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 367 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.570419 - 0.9s | ||
| 368 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265 .................. | ||
| 369 | +[CV] c1=0.09824882728525007, c2=0.01967357302620265, score=0.920970 - 1.1s | ||
| 370 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028 ................... | ||
| 371 | +[CV] c1=0.5517747693290754, c2=0.03723059660924028, score=0.852821 - 1.2s | ||
| 372 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 373 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.720311 - 1.3s | ||
| 374 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 375 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.923613 - 0.8s | ||
| 376 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043 ................. | ||
| 377 | +[CV] c1=0.38596509561932013, c2=0.021114690490169043, score=0.772136 - 1.3s | ||
| 378 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 379 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.843581 - 1.2s | ||
| 380 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441 .................. | ||
| 381 | +[CV] c1=0.4160233685238722, c2=0.015614531623244441, score=0.679766 - 1.0s | ||
| 382 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 383 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.875991 - 1.1s | ||
| 384 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 385 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.707036 - 0.9s | ||
| 386 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978 ................... | ||
| 387 | +[CV] c1=0.6639775093102331, c2=0.05327533729445978, score=0.682045 - 1.2s | ||
| 388 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892 .................. | ||
| 389 | +[CV] c1=1.6387163642774465, c2=0.006347413830953892, score=0.599660 - 1.3s | ||
| 390 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886 .................... | ||
| 391 | +[CV] c1=1.4731035528519316, c2=0.0985918850323886, score=0.605840 - 1.1s | ||
| 392 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572 .................. | ||
| 393 | +[CV] c1=0.03993462764763037, c2=0.10539193423951572, score=0.866790 - 1.2s | ||
| 394 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744 ............... | ||
| 395 | +[CV] c1=0.011903408156662585, c2=0.0023869256052412744, score=0.927704 - 0.9s | ||
| 396 | +Training done in: 7.249866s | ||
| 397 | + Saving training model... | ||
| 398 | + Saving training model done in: 0.014392s | ||
| 399 | +********************************* | ||
| 400 | +Prediction done in: 0.025039s |
CRF/outputs/Run7_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003552s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 word 1 | ||
| 23 | +5 isUpper False | ||
| 24 | +6 isLower False | ||
| 25 | +7 isGreek False | ||
| 26 | +8 isNumber True | ||
| 27 | +9 -1:word PQ | ||
| 28 | +10 -2:lemma δsoxs | ||
| 29 | +11 -2:postag NN | ||
| 30 | +--------------------------- FeaturesTest ----------------------------- | ||
| 31 | + 0 1 | ||
| 32 | +0 lemma delta-fnr | ||
| 33 | +1 postag NN | ||
| 34 | +2 -1:lemma _ | ||
| 35 | +3 -1:postag NN | ||
| 36 | +4 +1:lemma _ | ||
| 37 | +5 +1:postag CD | ||
| 38 | +6 word delta-fnr | ||
| 39 | +7 isUpper False | ||
| 40 | +8 isLower True | ||
| 41 | +9 isGreek False | ||
| 42 | +10 isNumber False | ||
| 43 | +11 -1:word _ | ||
| 44 | +12 +1:word _ | ||
| 45 | +13 -2:lemma affyexp | ||
| 46 | +14 -2:postag JJ | ||
| 47 | +15 +2:lemma glucose | ||
| 48 | +16 +2:postag NN | ||
| 49 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 50 | +[CV] c1=0.17002935344175654, c2=0.03048089985747861 .................. | ||
| 51 | +[CV] c1=0.17002935344175654, c2=0.03048089985747861, score=0.930099 - 1.6s | ||
| 52 | +[CV] c1=0.4722267453140106, c2=0.001685255428968536 .................. | ||
| 53 | +[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.909545 - 1.9s | ||
| 54 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044 .................. | ||
| 55 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.636866 - 1.5s | ||
| 56 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................ | ||
| 57 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.766937 - 1.6s | ||
| 58 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404 ................... | ||
| 59 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.619815 - 1.4s | ||
| 60 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413 .................. | ||
| 61 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.751476 - 1.6s | ||
| 62 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 63 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.724597 - 1.5s | ||
| 64 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044 .................. | ||
| 65 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.788344 - 1.6s | ||
| 66 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................ | ||
| 67 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.850760 - 1.6s | ||
| 68 | +[CV] c1=0.16521043789445478, c2=0.12734995352729425 .................. | ||
| 69 | +[CV] c1=0.16521043789445478, c2=0.12734995352729425, score=0.930099 - 1.6s | ||
| 70 | +[CV] c1=0.08911978010699523, c2=0.0017540149814192383 ................ | ||
| 71 | +[CV] c1=0.08911978010699523, c2=0.0017540149814192383, score=0.614273 - 1.2s | ||
| 72 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 73 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.630631 - 1.3s | ||
| 74 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044 .................. | ||
| 75 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.893154 - 1.7s | ||
| 76 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................ | ||
| 77 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.906170 - 1.6s | ||
| 78 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404 ................... | ||
| 79 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.849859 - 1.5s | ||
| 80 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413 .................. | ||
| 81 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.711614 - 1.6s | ||
| 82 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 83 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.711518 - 1.6s | ||
| 84 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044 .................. | ||
| 85 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.930099 - 1.7s | ||
| 86 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................ | ||
| 87 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.686192 - 1.4s | ||
| 88 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404 ................... | ||
| 89 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.856270 - 1.5s | ||
| 90 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413 .................. | ||
| 91 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.874769 - 1.7s | ||
| 92 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 93 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.812021 - 1.6s | ||
| 94 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044 .................. | ||
| 95 | +[CV] c1=0.038297678976678046, c2=0.1916126137406044, score=0.845019 - 1.6s | ||
| 96 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506 ................ | ||
| 97 | +[CV] c1=0.22369184983412724, c2=0.0039152206686826506, score=0.765174 - 1.6s | ||
| 98 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404 ................... | ||
| 99 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.740712 - 1.5s | ||
| 100 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413 .................. | ||
| 101 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.844591 - 1.5s | ||
| 102 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 103 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.656309 - 1.6s | ||
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| 408 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404 ................... | ||
| 409 | +[CV] c1=0.7316013853643798, c2=0.25017196058094404, score=0.613639 - 1.3s | ||
| 410 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413 .................. | ||
| 411 | +[CV] c1=0.7934403590252077, c2=0.010140047052715413, score=0.664382 - 1.4s | ||
| 412 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165 ................... | ||
| 413 | +[CV] c1=1.2484765854262996, c2=0.03066474574094165, score=0.709002 - 1.6s | ||
| 414 | +[CV] c1=1.4620038736037526, c2=0.04868337460924114 ................... | ||
| 415 | +[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.568876 - 1.3s | ||
| 416 | +[CV] c1=0.14069682863299926, c2=0.024714016482769777 ................. | ||
| 417 | +[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.883871 - 1.9s | ||
| 418 | +[CV] c1=0.4862974700385636, c2=0.028075320941336974 .................. | ||
| 419 | +[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.906931 - 1.2s | ||
| 420 | +[CV] c1=0.14528662487494648, c2=0.20027010511973786 .................. | ||
| 421 | +[CV] c1=0.14528662487494648, c2=0.20027010511973786, score=0.879541 - 1.9s | ||
| 422 | +[CV] c1=0.4722267453140106, c2=0.001685255428968536 .................. | ||
| 423 | +[CV] c1=0.4722267453140106, c2=0.001685255428968536, score=0.871207 - 1.7s | ||
| 424 | +[CV] c1=1.4620038736037526, c2=0.04868337460924114 ................... | ||
| 425 | +[CV] c1=1.4620038736037526, c2=0.04868337460924114, score=0.803851 - 1.8s | ||
| 426 | +[CV] c1=0.14069682863299926, c2=0.024714016482769777 ................. | ||
| 427 | +[CV] c1=0.14069682863299926, c2=0.024714016482769777, score=0.697441 - 1.3s | ||
| 428 | +[CV] c1=0.4862974700385636, c2=0.028075320941336974 .................. | ||
| 429 | +[CV] c1=0.4862974700385636, c2=0.028075320941336974, score=0.871207 - 1.4s | ||
| 430 | +Training done in: 10.702919s | ||
| 431 | + Saving training model... | ||
| 432 | + Saving training model done in: 0.013511s | ||
| 433 | +********************************* | ||
| 434 | +Prediction done in: 0.037534s |
CRF/outputs/Run8_v1.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v9 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003941s | ||
| 15 | +{'lemma': 'δsoxs', 'postag': 'NN', '+1:lemma': 'pq', '+1:postag': 'NN'} | ||
| 16 | +{'lemma': 'affyexp', 'postag': 'JJ', '+1:lemma': '_', '+1:postag': 'NN'} | ||
| 17 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 18 | +[CV] c1=0.6805169695271499, c2=0.059941860636124 ..................... | ||
| 19 | +[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.739174 - 1.1s | ||
| 20 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
| 21 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.867500 - 1.2s | ||
| 22 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145 ................. | ||
| 23 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.883871 - 1.2s | ||
| 24 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513 ................... | ||
| 25 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.682045 - 1.3s | ||
| 26 | +[CV] c1=0.3610226719997963, c2=0.029611486118589044 .................. | ||
| 27 | +[CV] c1=0.3610226719997963, c2=0.029611486118589044, score=0.592237 - 0.8s | ||
| 28 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116 .................. | ||
| 29 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116, score=0.674776 - 1.0s | ||
| 30 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
| 31 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.861398 - 1.1s | ||
| 32 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145 ................. | ||
| 33 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.592237 - 0.9s | ||
| 34 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513 ................... | ||
| 35 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.747150 - 1.4s | ||
| 36 | +[CV] c1=0.3610226719997963, c2=0.029611486118589044 .................. | ||
| 37 | +[CV] c1=0.3610226719997963, c2=0.029611486118589044, score=0.679766 - 0.8s | ||
| 38 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116 .................. | ||
| 39 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116, score=0.713945 - 1.1s | ||
| 40 | +[CV] c1=0.2107941425103855, c2=0.07645318409354064 ................... | ||
| 41 | +[CV] c1=0.2107941425103855, c2=0.07645318409354064, score=0.713945 - 1.2s | ||
| 42 | +[CV] c1=0.43870196113001303, c2=0.10254088863167253 .................. | ||
| 43 | +[CV] c1=0.43870196113001303, c2=0.10254088863167253, score=0.632439 - 1.0s | ||
| 44 | +[CV] c1=0.4124010091584731, c2=0.03226124445670804 ................... | ||
| 45 | +[CV] c1=0.4124010091584731, c2=0.03226124445670804, score=0.721334 - 1.2s | ||
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| 48 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116 .................. | ||
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| 296 | +[CV] c1=0.14547316667964716, c2=0.04275866782811716 .................. | ||
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| 306 | +[CV] c1=0.14547316667964716, c2=0.04275866782811716 .................. | ||
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| 308 | +[CV] c1=0.1827955499307428, c2=0.002673779161901005 .................. | ||
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| 314 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
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| 318 | +[CV] c1=0.7907559657386046, c2=0.04221232955070474 ................... | ||
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| 322 | +[CV] c1=0.11923109411090525, c2=0.08712148554319654 .................. | ||
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| 324 | +[CV] c1=1.5310724688252555, c2=0.007849882070317076 .................. | ||
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| 326 | +[CV] c1=0.3610226719997963, c2=0.029611486118589044 .................. | ||
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| 328 | +[CV] c1=0.0893601644204355, c2=0.024019081127496116 .................. | ||
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| 330 | +[CV] c1=0.6067183285356851, c2=0.02508677467384688 ................... | ||
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| 342 | +[CV] c1=0.43870196113001303, c2=0.10254088863167253 .................. | ||
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| 344 | +[CV] c1=0.4124010091584731, c2=0.03226124445670804 ................... | ||
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| 346 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
| 347 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.607039 - 0.7s | ||
| 348 | +[CV] c1=0.6805169695271499, c2=0.059941860636124 ..................... | ||
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| 350 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
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| 356 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
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| 358 | +[CV] c1=0.6805169695271499, c2=0.059941860636124 ..................... | ||
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| 360 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
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| 366 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
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| 368 | +[CV] c1=0.6805169695271499, c2=0.059941860636124 ..................... | ||
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| 370 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
| 371 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.902145 - 1.2s | ||
| 372 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145 ................. | ||
| 373 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.920970 - 1.3s | ||
| 374 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513 ................... | ||
| 375 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.578486 - 0.9s | ||
| 376 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
| 377 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.866790 - 1.0s | ||
| 378 | +[CV] c1=0.6805169695271499, c2=0.059941860636124 ..................... | ||
| 379 | +[CV] c1=0.6805169695271499, c2=0.059941860636124, score=0.794740 - 1.1s | ||
| 380 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514 ................ | ||
| 381 | +[CV] c1=0.002248053678487388, c2=0.022468299598165514, score=0.935386 - 1.2s | ||
| 382 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145 ................. | ||
| 383 | +[CV] c1=0.11105424454358216, c2=0.015741660010216145, score=0.741434 - 1.1s | ||
| 384 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513 ................... | ||
| 385 | +[CV] c1=0.6648810381927359, c2=0.08001031738332513, score=0.794740 - 1.1s | ||
| 386 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534 .................. | ||
| 387 | +[CV] c1=0.06371903845172723, c2=0.09382386151498534, score=0.881938 - 1.0s | ||
| 388 | +Training done in: 7.467291s | ||
| 389 | + Saving training model... | ||
| 390 | + Saving training model done in: 0.015227s | ||
| 391 | +********************************* | ||
| 392 | +Prediction done in: 0.026117s |
CRF/outputs/Run8_v2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70_v4.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30_v4.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v2 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 283 | ||
| 13 | + Sentences test data: 122 | ||
| 14 | +Reading corpus done in: 0.003745s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 1 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma pq | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 word[:1] 1 | ||
| 27 | +9 word 1 | ||
| 28 | +10 isUpper False | ||
| 29 | +11 isLower False | ||
| 30 | +12 isGreek False | ||
| 31 | +13 isNumber True | ||
| 32 | +14 -1:word PQ | ||
| 33 | +15 -2:lemma δsoxs | ||
| 34 | +16 -2:postag NN | ||
| 35 | +--------------------------- FeaturesTest ----------------------------- | ||
| 36 | + 0 1 | ||
| 37 | +0 lemma delta-fnr | ||
| 38 | +1 postag NN | ||
| 39 | +2 -1:lemma _ | ||
| 40 | +3 -1:postag NN | ||
| 41 | +4 +1:lemma _ | ||
| 42 | +5 +1:postag CD | ||
| 43 | +6 hUpper False | ||
| 44 | +7 hLower False | ||
| 45 | +8 hGreek False | ||
| 46 | +9 symb True | ||
| 47 | +10 word[:1] d | ||
| 48 | +11 word[:2] de | ||
| 49 | +12 word delta-fnr | ||
| 50 | +13 isUpper False | ||
| 51 | +14 isLower True | ||
| 52 | +15 isGreek False | ||
| 53 | +16 isNumber False | ||
| 54 | +17 -1:word _ | ||
| 55 | +18 +1:word _ | ||
| 56 | +19 -2:lemma affyexp | ||
| 57 | +20 -2:postag JJ | ||
| 58 | +21 +2:lemma glucose | ||
| 59 | +22 +2:postag NN | ||
| 60 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 61 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 62 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.860686 - 1.4s | ||
| 63 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 64 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.856606 - 2.1s | ||
| 65 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 66 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.860686 - 1.6s | ||
| 67 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 68 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.711685 - 1.9s | ||
| 69 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933 .................. | ||
| 70 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.918560 - 2.1s | ||
| 71 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 72 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.715283 - 1.5s | ||
| 73 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313 ................... | ||
| 74 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.883499 - 1.9s | ||
| 75 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 76 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.724487 - 1.9s | ||
| 77 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 78 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.680522 - 1.8s | ||
| 79 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 80 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.697314 - 1.5s | ||
| 81 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 82 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.860686 - 1.5s | ||
| 83 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313 ................... | ||
| 84 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.727640 - 2.1s | ||
| 85 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 86 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.871735 - 1.7s | ||
| 87 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 88 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.722958 - 1.6s | ||
| 89 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 90 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.860776 - 1.9s | ||
| 91 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205 ................... | ||
| 92 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.795468 - 1.6s | ||
| 93 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 94 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.759154 - 1.9s | ||
| 95 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 96 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.855051 - 1.9s | ||
| 97 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 98 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.863709 - 1.9s | ||
| 99 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 100 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.778562 - 1.8s | ||
| 101 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 102 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.708096 - 1.3s | ||
| 103 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 104 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.727640 - 1.9s | ||
| 105 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 106 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.673283 - 2.1s | ||
| 107 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 108 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.845435 - 2.0s | ||
| 109 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 110 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.847925 - 2.1s | ||
| 111 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205 ................... | ||
| 112 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.621599 - 1.6s | ||
| 113 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 114 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.717756 - 1.7s | ||
| 115 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 116 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.795468 - 1.8s | ||
| 117 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 118 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.801799 - 2.1s | ||
| 119 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 120 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.779671 - 1.9s | ||
| 121 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 122 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.961600 - 1.8s | ||
| 123 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 124 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.933241 - 2.0s | ||
| 125 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 126 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.706732 - 1.8s | ||
| 127 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 128 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.750626 - 1.9s | ||
| 129 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 130 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.759154 - 1.9s | ||
| 131 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 132 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.705910 - 1.5s | ||
| 133 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 134 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.802981 - 1.8s | ||
| 135 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 136 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.891699 - 2.0s | ||
| 137 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 138 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.848726 - 2.2s | ||
| 139 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 140 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.933241 - 2.0s | ||
| 141 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088 .................. | ||
| 142 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.868519 - 1.8s | ||
| 143 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256 ................... | ||
| 144 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.855051 - 1.9s | ||
| 145 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894 .................. | ||
| 146 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.790731 - 2.2s | ||
| 147 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 148 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.667213 - 1.9s | ||
| 149 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 150 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.906414 - 1.4s | ||
| 151 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 152 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.860682 - 2.0s | ||
| 153 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 154 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.917580 - 2.1s | ||
| 155 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 156 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.795856 - 1.9s | ||
| 157 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105 .................. | ||
| 158 | +[CV] c1=0.603209677420507, c2=0.0025056598967555105, score=0.885638 - 2.0s | ||
| 159 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 160 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.746316 - 1.8s | ||
| 161 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313 ................... | ||
| 162 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.705446 - 1.7s | ||
| 163 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 164 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.885638 - 1.9s | ||
| 165 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 166 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.896573 - 1.9s | ||
| 167 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 168 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.677691 - 1.6s | ||
| 169 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205 ................... | ||
| 170 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.732294 - 1.9s | ||
| 171 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313 ................... | ||
| 172 | +[CV] c1=0.3286068152393628, c2=0.10962981701798313, score=0.895764 - 2.1s | ||
| 173 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 174 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.802130 - 1.8s | ||
| 175 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 176 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.784018 - 1.9s | ||
| 177 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 178 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.860350 - 1.8s | ||
| 179 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 180 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.691162 - 1.6s | ||
| 181 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306 .................. | ||
| 182 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.735598 - 1.9s | ||
| 183 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435 ................. | ||
| 184 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.705265 - 1.8s | ||
| 185 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 186 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.702864 - 1.6s | ||
| 187 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 188 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.730482 - 1.8s | ||
| 189 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088 .................. | ||
| 190 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.680522 - 1.6s | ||
| 191 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306 .................. | ||
| 192 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.660504 - 1.8s | ||
| 193 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 194 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.778562 - 1.8s | ||
| 195 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 196 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.917580 - 2.0s | ||
| 197 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 198 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.768697 - 1.7s | ||
| 199 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205 ................... | ||
| 200 | +[CV] c1=0.05199276558605893, c2=0.0702365499252205, score=0.906414 - 2.1s | ||
| 201 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306 .................. | ||
| 202 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.900313 - 1.9s | ||
| 203 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435 ................. | ||
| 204 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.730917 - 1.9s | ||
| 205 | +[CV] c1=0.8844076483955583, c2=0.11585472431298503 ................... | ||
| 206 | +[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.657484 - 1.9s | ||
| 207 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 208 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.738645 - 1.6s | ||
| 209 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088 .................. | ||
| 210 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.865290 - 1.8s | ||
| 211 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306 .................. | ||
| 212 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.618706 - 1.6s | ||
| 213 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012 .................. | ||
| 214 | +[CV] c1=0.6822425755498431, c2=0.020713938001918012, score=0.868519 - 1.9s | ||
| 215 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474 ................. | ||
| 216 | +[CV] c1=0.37575104918065877, c2=0.014068909404949474, score=0.933241 - 1.9s | ||
| 217 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 218 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.906753 - 1.8s | ||
| 219 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 220 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.818747 - 1.8s | ||
| 221 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 222 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.790731 - 2.0s | ||
| 223 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505 .................. | ||
| 224 | +[CV] c1=0.16114579362036052, c2=0.09197634743194505, score=0.940922 - 1.9s | ||
| 225 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588 .................. | ||
| 226 | +[CV] c1=0.9049035713403341, c2=0.021741456177008588, score=0.925895 - 2.4s | ||
| 227 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791 ................... | ||
| 228 | +[CV] c1=0.5180245113660787, c2=0.03601101440244791, score=0.759154 - 1.9s | ||
| 229 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669 ................. | ||
| 230 | +[CV] c1=0.08997152792208764, c2=0.004363773952774669, score=0.902851 - 1.2s | ||
| 231 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306 ............... | ||
| 232 | +[CV] c1=0.49898154231973574, c2=0.00020584758644216306, score=0.708096 - 1.7s | ||
| 233 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256 ................... | ||
| 234 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.702905 - 1.6s | ||
| 235 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894 .................. | ||
| 236 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.680522 - 1.6s | ||
| 237 | +[CV] c1=0.8844076483955583, c2=0.11585472431298503 ................... | ||
| 238 | +[CV] c1=0.8844076483955583, c2=0.11585472431298503, score=0.880312 - 1.9s | ||
| 239 | +[CV] c1=0.14485727750148428, c2=0.21618502439248377 .................. | ||
| 240 | +[CV] c1=0.14485727750148428, c2=0.21618502439248377, score=0.673283 - 1.5s | ||
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| 421 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088 .................. | ||
| 422 | +[CV] c1=0.1380082549956592, c2=0.015618296578657088, score=0.690217 - 1.6s | ||
| 423 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256 ................... | ||
| 424 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.906414 - 2.0s | ||
| 425 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894 .................. | ||
| 426 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.860614 - 2.2s | ||
| 427 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933 .................. | ||
| 428 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.717051 - 1.7s | ||
| 429 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897 .................. | ||
| 430 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.863709 - 1.6s | ||
| 431 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 432 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.906414 - 2.0s | ||
| 433 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306 .................. | ||
| 434 | +[CV] c1=0.06155533734282551, c2=0.11747794204884306, score=0.855051 - 1.9s | ||
| 435 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435 ................. | ||
| 436 | +[CV] c1=0.32267196716974095, c2=0.030929293399615435, score=0.925895 - 2.0s | ||
| 437 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933 .................. | ||
| 438 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.699424 - 1.9s | ||
| 439 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897 .................. | ||
| 440 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.821625 - 1.7s | ||
| 441 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703 ................. | ||
| 442 | +[CV] c1=0.08369291557347798, c2=0.012233988100281703, score=0.908780 - 2.0s | ||
| 443 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256 ................... | ||
| 444 | +[CV] c1=0.14146941159261275, c2=0.0623745074286256, score=0.732294 - 2.2s | ||
| 445 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894 .................. | ||
| 446 | +[CV] c1=0.5149952083751863, c2=0.020547420013119894, score=0.791382 - 1.9s | ||
| 447 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933 .................. | ||
| 448 | +[CV] c1=1.1812306284364236, c2=0.008430514440727933, score=0.827582 - 1.9s | ||
| 449 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897 .................. | ||
| 450 | +[CV] c1=0.8585868277805841, c2=0.018563372539478897, score=0.795856 - 1.7s | ||
| 451 | +Training done in: 12.580321s | ||
| 452 | + Saving training model... | ||
| 453 | + Saving training model done in: 0.013719s | ||
| 454 | +********************************* | ||
| 455 | +Prediction done in: 0.043038s |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.025778789677348212, 'c2': 0.0018714562014074947} | 4 | +best params:{'c1': 0.008401850714357223, 'c2': 0.010433611834050949} |
| 5 | -best CV score:0.8085092726655764 | 5 | +best CV score:0.8001659242959697 |
| 6 | -model size: 0.08M | 6 | +model size: 0.10M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.8137583902797803 | 8 | +Flat F1: 0.8047780251190458 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | - OD 1.000 0.405 0.577 37 | 11 | + OD 0.789 0.405 0.536 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | - Technique 0.880 1.000 0.936 22 | 13 | + Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.852 0.912 0.881 57 | 14 | + Med 0.897 0.912 0.904 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | Phase 1.000 0.947 0.973 19 | 18 | Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.920 0.742 0.821 62 | 19 | + Air 0.780 0.742 0.760 62 |
| 20 | - Anti 1.000 0.444 0.615 9 | 20 | + Anti 1.000 0.667 0.800 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.905 0.811 0.856 106 | 22 | + Gtype 0.867 0.802 0.833 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.883 0.669 0.762 136 | 24 | + Supp 0.869 0.684 0.765 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.904 0.760 0.814 480 | 27 | +avg / total 0.866 0.762 0.805 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -OD -> OD 6.458139 | 31 | +Agit -> Agit 6.023468 |
| 32 | -Agit -> Agit 6.258931 | 32 | +OD -> OD 5.987741 |
| 33 | -Anti -> Anti 6.237003 | 33 | +Anti -> Anti 5.339561 |
| 34 | -Temp -> Temp 6.159227 | 34 | +O -> O 5.206576 |
| 35 | -Med -> Med 5.670034 | 35 | +Temp -> Temp 5.181595 |
| 36 | -O -> O 5.195209 | 36 | +Med -> Med 5.180925 |
| 37 | -Air -> Air 5.178796 | 37 | +Air -> Air 4.646819 |
| 38 | -Gversion -> Gversion 5.056321 | 38 | +Gversion -> Gversion 4.293932 |
| 39 | -Gtype -> Gtype 4.897516 | 39 | +Gtype -> Gtype 4.243250 |
| 40 | -Phase -> Phase 4.866866 | 40 | +Phase -> Phase 4.214400 |
| 41 | -Technique -> Technique 4.086604 | 41 | +Supp -> Supp 4.068489 |
| 42 | -Supp -> Supp 3.969422 | 42 | +Technique -> Technique 3.260803 |
| 43 | -pH -> pH 2.272089 | 43 | +pH -> pH 2.779994 |
| 44 | -Substrain -> Gtype 1.512606 | 44 | +O -> Supp 1.733365 |
| 45 | -O -> Supp 1.281866 | 45 | +Substrain -> Gtype 1.597482 |
| 46 | -Gtype -> Supp 1.254695 | 46 | +O -> Technique 1.105926 |
| 47 | -Technique -> Air 1.119472 | 47 | +Gtype -> Supp 1.074709 |
| 48 | -O -> Technique 1.098084 | 48 | +O -> Gtype 0.988353 |
| 49 | -O -> Anti 0.739732 | 49 | +Technique -> Air 0.947990 |
| 50 | -O -> Gtype 0.595581 | 50 | +O -> Anti 0.752151 |
| 51 | -O -> Gversion 0.361965 | 51 | +O -> Temp 0.715991 |
| 52 | -O -> Temp 0.359101 | 52 | +Gtype -> pH 0.687911 |
| 53 | -Gtype -> pH 0.252154 | 53 | +O -> Strain 0.484049 |
| 54 | -O -> Strain 0.203795 | 54 | +Air -> O 0.435475 |
| 55 | -Air -> O 0.106227 | 55 | +Gtype -> Air 0.237417 |
| 56 | -Gtype -> Air 0.052216 | 56 | +O -> pH 0.237401 |
| 57 | -O -> pH 0.007039 | 57 | +O -> Gversion 0.212779 |
| 58 | -Gversion -> Supp -0.000001 | 58 | +O -> Vess 0.076820 |
| 59 | -pH -> Supp -0.000232 | 59 | +O -> Phase 0.037554 |
| 60 | -Strain -> O -0.001882 | 60 | +pH -> Gversion -0.000018 |
| 61 | -Phase -> Supp -0.055890 | 61 | +OD -> Strain -0.003457 |
| 62 | -Phase -> Air -0.056319 | 62 | +Phase -> Strain -0.004908 |
| 63 | -OD -> Phase -0.082524 | 63 | +Air -> Vess -0.005394 |
| 64 | -O -> Phase -0.121225 | 64 | +Phase -> Gversion -0.014599 |
| 65 | -O -> OD -0.123240 | 65 | +Gtype -> Agit -0.016123 |
| 66 | -Gtype -> Phase -0.163289 | 66 | +Gversion -> Med -0.016983 |
| 67 | -Temp -> O -0.187600 | 67 | +Vess -> O -0.017867 |
| 68 | -Med -> O -0.241653 | 68 | +Gtype -> Strain -0.043341 |
| 69 | -Gtype -> Gversion -0.242298 | 69 | +Anti -> Gversion -0.044629 |
| 70 | -pH -> O -0.266321 | 70 | +Agit -> Air -0.049411 |
| 71 | -OD -> Supp -0.290317 | 71 | +Gversion -> Anti -0.055390 |
| 72 | -Air -> Gtype -0.354319 | 72 | +OD -> pH -0.057387 |
| 73 | -Phase -> Temp -0.371875 | 73 | +Gtype -> Vess -0.065585 |
| 74 | -Anti -> O -0.373128 | 74 | +Substrain -> Supp -0.071178 |
| 75 | -Phase -> pH -0.374040 | 75 | +Agit -> Supp -0.075952 |
| 76 | -Phase -> Gtype -0.388060 | 76 | +Phase -> O -0.085482 |
| 77 | -Technique -> Gtype -0.398116 | 77 | +Air -> Substrain -0.092852 |
| 78 | -Gversion -> O -0.453455 | 78 | +Air -> Agit -0.094494 |
| 79 | -Air -> Phase -0.500367 | 79 | +pH -> OD -0.094754 |
| 80 | -Supp -> Phase -0.539395 | 80 | +Strain -> OD -0.101112 |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | Top unlikely transitions: | 83 | Top unlikely transitions: |
| 84 | -Med -> O -0.241653 | 84 | +Med -> Technique -0.617122 |
| 85 | -Gtype -> Gversion -0.242298 | 85 | +Anti -> Gtype -0.648491 |
| 86 | -pH -> O -0.266321 | 86 | +Technique -> Supp -0.653349 |
| 87 | -OD -> Supp -0.290317 | 87 | +Air -> Gtype -0.674312 |
| 88 | -Air -> Gtype -0.354319 | 88 | +Phase -> Supp -0.687180 |
| 89 | -Phase -> Temp -0.371875 | 89 | +Supp -> pH -0.691310 |
| 90 | -Anti -> O -0.373128 | 90 | +OD -> Temp -0.720203 |
| 91 | -Phase -> pH -0.374040 | 91 | +Phase -> Med -0.735659 |
| 92 | -Phase -> Gtype -0.388060 | 92 | +OD -> Technique -0.736152 |
| 93 | -Technique -> Gtype -0.398116 | 93 | +Gtype -> Gversion -0.736973 |
| 94 | -Gversion -> O -0.453455 | 94 | +Gtype -> Technique -0.792645 |
| 95 | -Air -> Phase -0.500367 | 95 | +Supp -> Vess -0.796725 |
| 96 | -Supp -> Phase -0.539395 | 96 | +Gversion -> Air -0.836299 |
| 97 | -O -> Med -0.558012 | 97 | +Air -> Temp -0.858957 |
| 98 | -Technique -> O -0.563680 | 98 | +Temp -> Med -0.902701 |
| 99 | -Technique -> pH -0.572119 | 99 | +Air -> Phase -0.915814 |
| 100 | -OD -> Air -0.575190 | 100 | +Supp -> O -0.968464 |
| 101 | -Phase -> O -0.591227 | 101 | +Supp -> Gversion -0.977110 |
| 102 | -Med -> Anti -0.624886 | 102 | +Med -> Air -1.000282 |
| 103 | -Anti -> OD -0.642709 | 103 | +Supp -> Temp -1.033968 |
| 104 | -O -> Air -0.644641 | 104 | +Agit -> O -1.058024 |
| 105 | -Phase -> Technique -0.707027 | 105 | +Supp -> OD -1.067605 |
| 106 | -Supp -> pH -0.714103 | 106 | +OD -> Supp -1.103342 |
| 107 | -Gtype -> O -0.767223 | 107 | +Phase -> Technique -1.118669 |
| 108 | -Supp -> Gversion -0.770430 | 108 | +Med -> Anti -1.133071 |
| 109 | -Supp -> Anti -0.833703 | 109 | +Anti -> OD -1.138727 |
| 110 | -Supp -> Technique -0.866289 | 110 | +Gtype -> Med -1.277127 |
| 111 | -Gtype -> Med -0.879350 | 111 | +Air -> Supp -1.287339 |
| 112 | -Supp -> OD -0.892817 | 112 | +Gtype -> Phase -1.342335 |
| 113 | -Agit -> O -0.961537 | 113 | +OD -> Med -1.360718 |
| 114 | -Phase -> Med -0.969283 | 114 | +Supp -> Gtype -1.375229 |
| 115 | -Temp -> Med -1.069687 | 115 | +Supp -> Phase -1.381910 |
| 116 | -Air -> Temp -1.156985 | 116 | +OD -> Gtype -1.386571 |
| 117 | -Air -> Supp -1.269357 | 117 | +Supp -> Anti -1.412562 |
| 118 | -OD -> O -1.314886 | 118 | +Air -> Med -1.437236 |
| 119 | -Supp -> Air -1.325800 | 119 | +OD -> O -1.444132 |
| 120 | -Technique -> OD -1.524590 | 120 | +Gtype -> OD -1.484604 |
| 121 | -OD -> Med -1.583386 | 121 | +Supp -> Technique -1.559328 |
| 122 | -Supp -> Gtype -1.630169 | 122 | +Substrain -> O -1.575494 |
| 123 | -Gtype -> OD -1.657535 | 123 | +O -> Air -1.706096 |
| 124 | -Supp -> O -1.680041 | 124 | +Gtype -> Anti -1.722995 |
| 125 | -Supp -> Temp -1.709825 | 125 | +Supp -> Air -1.758624 |
| 126 | -Air -> Med -1.823169 | 126 | +Technique -> Gtype -1.763985 |
| 127 | -OD -> Gtype -1.852919 | 127 | +Technique -> pH -1.821163 |
| 128 | -Gtype -> Anti -1.909177 | 128 | +Technique -> OD -1.868841 |
| 129 | -Substrain -> O -1.923623 | 129 | +OD -> Air -2.015499 |
| 130 | -Air -> OD -2.860427 | 130 | +Med -> Supp -2.311994 |
| 131 | -Med -> Supp -2.964145 | 131 | +Air -> OD -2.334329 |
| 132 | -Supp -> Med -3.290588 | 132 | +Supp -> Med -2.339867 |
| 133 | -Phase -> OD -4.227426 | 133 | +Phase -> OD -3.142146 |
| 134 | 134 | ||
| 135 | 135 | ||
| 136 | Top positive: | 136 | Top positive: |
| 137 | -11.662855 Supp b'lemma:Iron' | 137 | +9.100852 Phase b'lemma:stationary' |
| 138 | -10.511953 O b'lemma:_' | 138 | +8.999666 O b'lemma:_' |
| 139 | -10.230310 Phase b'lemma:stationary' | 139 | +7.748243 O b'lemma:1' |
| 140 | -9.183606 Air b'lemma:anaerobic' | 140 | +7.006071 Supp b'lemma:Iron' |
| 141 | -9.126291 O b'lemma:1' | 141 | +6.641579 O b'lemma:2' |
| 142 | -8.974301 Med b'lemma:MOPS' | 142 | +6.624553 Strain b'lemma:k-12' |
| 143 | -8.702900 O b'lemma:rpob' | 143 | +6.534879 Air b'lemma:anaerobic' |
| 144 | -8.676761 Phase b'lemma:mid-log' | 144 | +6.384186 Technique b'lemma:ChIP-exo' |
| 145 | -8.568886 Air b'lemma:aerobic' | 145 | +6.173586 Phase b'lemma:mid-log' |
| 146 | -8.230748 Technique b'lemma:chipseq' | 146 | +6.148502 Technique b'lemma:chipseq' |
| 147 | -8.195390 Technique b'lemma:ChIP-exo' | 147 | +6.098091 Air b'lemma:aerobic' |
| 148 | -8.058605 O b'-1:lemma:tag' | 148 | +6.023461 O b'lemma:3' |
| 149 | -7.748813 Supp b'lemma:nitrate' | 149 | +6.014984 O b'lemma:rpob' |
| 150 | -7.383352 Med b'lemma:LB' | 150 | +5.860186 Air b'-1:lemma:ChIP-Seq' |
| 151 | -7.258212 O b'lemma:2' | 151 | +5.802538 Supp b'lemma:pq' |
| 152 | -7.185114 Gversion b'lemma:asm584v2' | 152 | +5.638935 O b'-1:lemma:tag' |
| 153 | -7.171158 O b'lemma:3' | 153 | +5.602314 O b'lemma:rep1' |
| 154 | -7.148092 Strain b'lemma:k-12' | 154 | +5.589299 Gtype b'lemma:flag-tag' |
| 155 | -7.115910 Supp b'lemma:pq' | 155 | +5.589299 Gtype b'-1:lemma:c-terminal' |
| 156 | -7.026371 O b'lemma:for' | 156 | +5.581884 O b'lemma:Custom' |
| 157 | -7.014323 Gtype b'lemma:arca8myc' | 157 | +5.540635 Gtype b'lemma:\xce\xb4cra' |
| 158 | -7.008078 Supp b'+1:lemma:\xc2\xb5m' | 158 | +5.474812 Gtype b'lemma:arca8myc' |
| 159 | -6.977598 Gtype b'lemma:\xce\xb4cra' | 159 | +5.435564 Gversion b'lemma:asm584v2' |
| 160 | -6.880186 Gtype b'lemma:flag-tag' | 160 | +5.394282 O b'lemma:rep2' |
| 161 | -6.880186 Gtype b'-1:lemma:c-terminal' | 161 | +5.304494 Supp b'lemma:nh4cl' |
| 162 | -6.658138 Gtype b'lemma:delta-arca' | 162 | +5.296910 Supp b'lemma:nitrate' |
| 163 | -6.634178 O b'lemma:rep3' | 163 | +5.214813 O b'lemma:Cra' |
| 164 | -6.604885 O b'lemma:rep1' | 164 | +5.213416 O b'lemma:rep3' |
| 165 | -6.417248 O b'lemma:rep2' | 165 | +5.212603 Supp b'lemma:acetate' |
| 166 | -6.415638 O b'lemma:Custom' | 166 | +5.118628 Supp b'lemma:glucose' |
| 167 | -6.361925 Gtype b'lemma:fnr8myc' | 167 | +5.066237 Gtype b'lemma:wt' |
| 168 | -6.326103 Supp b'lemma:acetate' | 168 | +5.033217 Substrain b'lemma:mg1655' |
| 169 | -6.318547 O b'-1:lemma:ChIP-exo' | 169 | +4.964764 Gtype b'lemma:fnr8myc' |
| 170 | -6.305986 OD b'+1:lemma:stationary' | 170 | +4.937549 Med b'lemma:MOPS' |
| 171 | -6.292137 Air b'lemma:Aerobic' | 171 | +4.932561 Gtype b'lemma:delta-arca' |
| 172 | -6.239583 Supp b'-1:lemma:Cra' | 172 | +4.932143 O b'-1:lemma:0.3-0.35' |
| 173 | -6.162599 Air b'-1:lemma:ChIP-Seq' | 173 | +4.874040 Med b'lemma:LB' |
| 174 | -6.138632 O b'-1:lemma:0.3-0.35' | 174 | +4.818460 O b'lemma:b' |
| 175 | -6.069303 O b'lemma:b' | 175 | +4.732064 Technique b'lemma:rna-seq' |
| 176 | -6.025530 Substrain b'lemma:mg1655' | 176 | +4.724853 Supp b'lemma:no3' |
| 177 | -6.018017 OD b'lemma:od450' | 177 | +4.706345 Air b'lemma:Aerobic' |
| 178 | -5.968029 Anti b'lemma:none' | 178 | +4.654200 Supp b'+1:lemma:Deficient' |
| 179 | -5.951239 Technique b'lemma:rna-seq' | 179 | +4.633561 Supp b'+1:lemma:\xc2\xb5m' |
| 180 | -5.870411 Gtype b'lemma:delta-fnr' | 180 | +4.585571 Supp b'-1:lemma:Cra' |
| 181 | -5.859331 Supp b'lemma:rifampicin' | 181 | +4.563109 O b'lemma:a' |
| 182 | -5.853962 O b'lemma:with' | 182 | +4.553217 Anti b'lemma:none' |
| 183 | -5.787035 Supp b'lemma:Fe' | 183 | +4.530685 O b'lemma:\xcf\x8332' |
| 184 | -5.696867 O b'lemma:Cra' | 184 | +4.515755 O b'lemma:with' |
| 185 | -5.666336 Gtype b'lemma:wt' | 185 | +4.479081 Gtype b'-1:lemma:\xe2\x88\x86' |
| 186 | -5.634727 O b'lemma:\xcf\x8332' | 186 | +4.475079 Supp b'lemma:Fe' |
| 187 | -5.556439 Anti b'lemma:seqa' | 187 | +4.452629 Technique b'lemma:chip-seq' |
| 188 | -5.495699 Technique b'lemma:rnaseq' | 188 | +4.444236 O b'-1:lemma:Aerobic' |
| 189 | -5.475249 O b'lemma:-' | 189 | +4.435460 Anti b'lemma:seqa' |
| 190 | -5.461891 O b'postag::' | 190 | +4.292325 O b'lemma:.' |
| 191 | -5.444655 Gtype b'-1:lemma:\xe2\x88\x86' | 191 | +4.292325 O b'postag:.' |
| 192 | -5.439532 Supp b'lemma:nh4cl' | 192 | +4.273737 O b'+1:postag:RB' |
| 193 | -5.347691 Med b'+1:lemma:0.4' | 193 | +4.252089 Gtype b'lemma:delta-fnr' |
| 194 | -5.306864 Gtype b'+1:lemma:type' | 194 | +4.231472 Med b'lemma:lb' |
| 195 | -5.249286 Supp b'lemma:arginine' | 195 | +4.224780 O b'-1:lemma:ChIP-exo' |
| 196 | -5.228272 Anti b'lemma:anti-myc' | 196 | +4.206346 Supp b'lemma:rifampicin' |
| 197 | -5.189623 Gtype b'lemma:\xce\xb4fur' | 197 | +4.199432 Supp b'lemma:dpd' |
| 198 | -5.112523 Med b'lemma:lb' | 198 | +4.196830 Technique b'lemma:rnaseq' |
| 199 | -5.068530 O b'lemma:chip' | 199 | +4.150761 Gversion b'lemma:chip-seq' |
| 200 | -5.060776 O b'lemma:CEL' | 200 | +4.119365 O b'lemma:CEL' |
| 201 | -5.009251 O b'lemma:a' | 201 | +4.091076 Supp b'+1:lemma:1' |
| 202 | -4.960032 Temp b'-1:lemma:\xcf\x8332' | 202 | +4.009950 O b'+1:lemma:od600' |
| 203 | -4.958666 O b'-1:lemma:Aerobic' | 203 | +3.985436 Gversion b'lemma:nc' |
| 204 | -4.897653 Supp b'-1:lemma:+' | 204 | +3.944251 O b'postag::' |
| 205 | -4.868444 O b'lemma:.' | 205 | +3.932450 Supp b'lemma:arginine' |
| 206 | -4.868444 O b'postag:.' | 206 | +3.929084 OD b'lemma:od600' |
| 207 | -4.830243 Supp b'lemma:glucose' | 207 | +3.904034 O b'postag:IN' |
| 208 | -4.820752 Supp b'lemma:no3' | 208 | +3.892475 OD b'lemma:od450' |
| 209 | -4.796496 Supp b'lemma:dpd' | 209 | +3.890673 O b'-1:lemma:glucose' |
| 210 | -4.791818 O b'+1:postag:RB' | 210 | +3.863795 Strain b'+1:lemma:substr' |
| 211 | -4.789121 O b'-1:lemma:anaerobic' | 211 | +3.821365 O b'lemma:chip-arca' |
| 212 | -4.777256 Temp b'-1:lemma:37' | 212 | +3.806189 Med b'+1:lemma:0.4' |
| 213 | -4.758659 Technique b'-1:lemma:IP' | 213 | +3.785919 Gtype b'lemma:type' |
| 214 | -4.751186 Gtype b'lemma:wild-type' | 214 | +3.769177 Gtype b'lemma:\xce\xb4fur' |
| 215 | -4.743291 Supp b'+1:lemma:1' | 215 | +3.757933 O b'lemma:-' |
| 216 | -4.741868 Vess b'lemma:flask' | 216 | +3.738083 O b'lemma:at' |
| 217 | -4.741868 Vess b'-1:lemma:warm' | 217 | +3.718639 O b'lemma:s' |
| 218 | -4.683816 O b'-1:lemma:glucose' | 218 | +3.712990 Vess b'lemma:flask' |
| 219 | -4.643413 Anti b'lemma:anti-rpos' | 219 | +3.712990 Vess b'-1:lemma:warm' |
| 220 | -4.633816 Technique b'lemma:chip-seq' | 220 | +3.710102 Supp b'lemma:fructose' |
| 221 | -4.629451 O b'lemma:oxyr' | 221 | +3.662732 Anti b'lemma:anti-myc' |
| 222 | -4.567353 Gtype b'lemma:\xe2\x88\x86' | 222 | +3.626865 O b'lemma:ompr' |
| 223 | -4.557296 Supp b'lemma:fructose' | 223 | +3.624215 O b'lemma:affyexp' |
| 224 | -4.556286 O b'lemma:affyexp' | 224 | +3.616354 OD b'+1:lemma:stationary' |
| 225 | -4.553249 OD b'lemma:od600' | 225 | +3.602114 O b'lemma:oxyr' |
| 226 | -4.531615 Gtype b'lemma:type' | 226 | +3.576976 O b'-1:lemma:lb' |
| 227 | -4.489891 O b'-1:lemma:0.3' | 227 | +3.569370 Gtype b'lemma:\xce\xb4soxs' |
| 228 | -4.480766 O b'lemma:2-3' | 228 | +3.553173 O b'-1:lemma:anaerobic' |
| 229 | -4.479384 Gversion b'lemma:nc' | 229 | +3.551741 Supp b'-1:lemma:+' |
| 230 | -4.467099 Technique b'+1:lemma:chip-exo' | 230 | +3.536448 Supp b'+1:lemma:2' |
| 231 | -4.434426 Gtype b'lemma:\xce\xb4soxs' | 231 | +3.514973 Supp b'lemma:nacl' |
| 232 | -4.430899 O b'-1:lemma:dpd' | 232 | +3.503853 Supp b'+1:lemma:_' |
| 233 | -4.412502 Strain b'+1:lemma:substr' | 233 | +3.482883 Air b'lemma:Anaerobic' |
| 234 | -4.408579 O b'lemma:or' | 234 | +3.480740 O b'lemma:2-3' |
| 235 | -4.394512 O b'+1:lemma:o.d.' | 235 | +3.480105 Gtype b'lemma:WT' |
| 236 | -4.374031 O b'+1:lemma:sparging' | 236 | +3.474757 Gtype b'lemma:wild-type' |
| 237 | -4.312161 Phase b'+1:lemma:for' | 237 | +3.469456 O b'lemma:argr' |
| 238 | -4.261060 O b'lemma:chip-arca' | 238 | +3.457060 Med b'+1:lemma:2.0' |
| 239 | -4.215222 Air b'lemma:anerobically' | 239 | +3.419049 O b'lemma:for' |
| 240 | -4.197581 Technique b'+1:lemma:rna-seq' | 240 | +3.379644 pH b'lemma:ph5' |
| 241 | -4.178924 Supp b'+1:lemma:_' | 241 | +3.379644 pH b'+1:lemma:.5' |
| 242 | -4.178128 Gversion b'lemma:chip-seq' | 242 | +3.367140 O b'postag:VBN' |
| 243 | -4.162694 Technique b'lemma:ChIP-Seq' | 243 | +3.356569 Gtype b'lemma:\xce\xb4ompr' |
| 244 | -4.136869 Supp b'+1:lemma:hour' | 244 | +3.317528 Med b'lemma:m63' |
| 245 | -4.135692 O b'+1:lemma:od600' | 245 | +3.306615 Supp b'lemma:Leu' |
| 246 | -4.120055 O b'postag:IN' | 246 | +3.296772 Supp b'lemma:Adenine' |
| 247 | -4.088450 Gtype b'lemma:nsrr' | 247 | +3.296739 Air b'postag:RB' |
| 248 | -4.087944 Med b'-1:lemma:ml' | 248 | +3.294576 Gtype b'lemma:nsrr' |
| 249 | -4.053773 Gtype b'+1:lemma:with' | 249 | +3.286258 O b'+1:lemma:chip-seq' |
| 250 | -4.022074 Gtype b'lemma:\xce\xb4ompr' | 250 | +3.282887 O b'lemma:purr' |
| 251 | -4.019457 Gtype b'lemma:WT' | 251 | +3.266319 Air b'lemma:anerobically' |
| 252 | -3.994335 Gversion b'-1:lemma:nc' | 252 | +3.218805 Gtype b'lemma:\xe2\x88\x86' |
| 253 | -3.986008 pH b'lemma:ph5' | 253 | +3.190285 Med b'+1:lemma:minimal' |
| 254 | -3.986008 pH b'+1:lemma:.5' | 254 | +3.188756 Gtype b'+1:lemma:type' |
| 255 | -3.963426 O b'lemma:ompr' | 255 | +3.170208 Gtype b'+1:lemma:with' |
| 256 | -3.957893 Med b'+1:lemma:2.0' | 256 | +3.161736 O b'-1:lemma:type' |
| 257 | -3.957602 O b'-1:lemma:lb' | 257 | +3.148922 O b'-1:lemma:stpa' |
| 258 | -3.947299 Med b'+1:lemma:contain' | 258 | +3.133657 Gversion b'lemma:u00096' |
| 259 | -3.938942 Gtype b'lemma:pk4854' | 259 | +3.133657 Gversion b'+1:lemma:.2' |
| 260 | -3.936645 Supp b'lemma:Leu' | 260 | +3.125085 Gversion b'lemma:.2' |
| 261 | -3.914299 Supp b'+1:lemma:2' | 261 | +3.125085 Gversion b'-1:lemma:u00096' |
| 262 | -3.906482 O b'lemma:Fur' | 262 | +3.118643 Med b'-1:lemma:ml' |
| 263 | -3.904505 Gversion b'lemma:u00096' | 263 | +3.117225 Gtype b'lemma:deltaseqa' |
| 264 | -3.904505 Gversion b'+1:lemma:.2' | 264 | +3.117225 Gtype b'-1:lemma:old' |
| 265 | -3.885731 Technique b'-1:lemma:input' | 265 | +3.112128 O b'lemma:pt7' |
| 266 | -3.877441 O b'-1:lemma:\xc2\xb0c' | 266 | +3.102115 O b'lemma:Lrp' |
| 267 | -3.864432 Gversion b'lemma:.2' | 267 | +3.099621 Technique b'lemma:ChIP-Seq' |
| 268 | -3.864432 Gversion b'-1:lemma:u00096' | 268 | +3.081419 Air b'lemma:anaerobically' |
| 269 | -3.854046 Substrain b'+1:lemma:phtpg' | 269 | +3.067625 O b'lemma:or' |
| 270 | -3.853262 O b'lemma:s' | 270 | +3.063004 Gversion b'lemma:000913' |
| 271 | -3.836382 O b'-1:lemma:type' | 271 | +3.052833 O b'lemma:Fur' |
| 272 | -3.827763 O b'lemma:soxs' | 272 | +3.018143 Gtype b'lemma:pk4854' |
| 273 | -3.827763 O b'lemma:soxr' | 273 | +3.011617 O b'lemma:soxs' |
| 274 | -3.789271 Technique b'-1:lemma:chip-exo' | 274 | +3.011617 O b'lemma:soxr' |
| 275 | -3.787785 Gtype b'lemma:deltaseqa' | 275 | +3.000132 Gtype b'+1:lemma:pq' |
| 276 | -3.787785 Gtype b'-1:lemma:old' | 276 | +2.985754 Gtype b'-1:lemma:ptac' |
| 277 | -3.767682 O b'+1:lemma:43' | 277 | +2.973552 Temp b'lemma:43' |
| 278 | -3.736088 Air b'lemma:Anaerobic' | 278 | +2.963324 Gtype b'-1:lemma:rpob' |
| 279 | -3.723469 O b'lemma:argr' | 279 | +2.958448 Temp b'lemma:\xc2\xb0c' |
| 280 | -3.707152 Med b'lemma:L' | 280 | +2.953047 Gtype b'+1:lemma:flagtag' |
| 281 | -3.707152 Med b'+1:lemma:broth' | 281 | +2.940589 Temp b'-1:lemma:43' |
| 282 | -3.693116 O b'lemma:purr' | 282 | +2.931670 Air b'-1:lemma:-' |
| 283 | -3.692833 Gtype b'lemma:\xce\xb4oxyr' | 283 | +2.908980 O b'+1:lemma:pq' |
| 284 | -3.687510 Gtype b'-1:lemma:ptac' | 284 | +2.898571 O b'+1:lemma:o.d.' |
| 285 | -3.668468 Gtype b'lemma:\xce\xb4soxr' | 285 | +2.897413 Phase b'+1:lemma:for' |
| 286 | -3.661904 Supp b'lemma:Adenine' | 286 | +2.889124 Supp b'+1:lemma:deficient' |
| 287 | -3.646336 O b'+1:lemma:chip-seq' | 287 | +2.883315 Technique b'-1:lemma:IP' |
| 288 | -3.633392 O b'lemma:Lrp' | 288 | +2.862356 Med b'postag:NNP' |
| 289 | -3.623734 Supp b'lemma:nacl' | 289 | +2.855084 Gtype b'lemma:dfnr' |
| 290 | -3.589169 O b'lemma:chip-fnr' | 290 | +2.854348 O b'-1:lemma:min' |
| 291 | -3.581632 Med b'lemma:glucose' | 291 | +2.825991 Gtype b'lemma:\xce\xb4oxyr' |
| 292 | -3.560733 Supp b'lemma:iptg' | 292 | +2.825899 Substrain b'+1:lemma:phtpg' |
| 293 | -3.552695 O b'lemma:delta' | 293 | +2.805567 Technique b'+1:lemma:chip-exo' |
| 294 | -3.509922 O b'postag:VBN' | 294 | +2.802057 Phase b'+1:lemma:phase' |
| 295 | -3.445521 Med b'lemma:m63' | 295 | +2.795215 Gtype b'lemma:\xce\xb4soxr' |
| 296 | -3.434419 Temp b'lemma:37' | 296 | +2.789107 Gversion b'-1:lemma:nc' |
| 297 | -3.388210 Temp b'-1:lemma:43' | 297 | +2.785366 Gtype b'lemma:ptac' |
| 298 | -3.386139 Gtype b'+1:lemma:knock-out' | 298 | +2.776048 Temp b'-1:lemma:37' |
| 299 | -3.379573 Temp b'-1:lemma:sample' | 299 | +2.774544 O b'lemma:chip-fnr' |
| 300 | -3.363114 Anti b'+1:lemma:antibody' | 300 | +2.770176 O b'lemma:chip' |
| 301 | -3.344587 Gtype b'+1:lemma:flagtag' | 301 | +2.760772 Temp b'lemma:37' |
| 302 | -3.343995 Gtype b'lemma:dfnr' | 302 | +2.745440 O b'-1:lemma:dpd' |
| 303 | -3.336085 Med b'+1:lemma:minimal' | 303 | +2.743110 Technique b'-1:lemma:input' |
| 304 | -3.329171 Gtype b'-1:lemma:rpob' | 304 | +2.730665 Air b'+1:lemma:at' |
| 305 | -3.326850 Supp b'+1:lemma:Deficient' | 305 | +2.727900 Anti b'lemma:anti-rpos' |
| 306 | -3.310593 Phase b'-1:lemma:until' | 306 | +2.727268 O b'+1:lemma:43' |
| 307 | -3.304072 O b'lemma:supplement' | 307 | +2.717795 Supp b'lemma:iptg' |
| 308 | -3.302560 O b'+1:lemma:37' | 308 | +2.713876 O b'-1:lemma:0.3' |
| 309 | -3.285761 Gtype b'lemma:ptac' | 309 | +2.687853 Gtype b'+1:lemma:aerobic' |
| 310 | -3.282886 OD b'lemma:0.3' | 310 | +2.619262 OD b'-1:lemma:~' |
| 311 | -3.280884 Gversion b'lemma:000913' | 311 | +2.616842 Temp b'+1:lemma:\xc2\xb0c' |
| 312 | -3.277170 Temp b'lemma:\xc2\xb0c' | 312 | +2.608331 Gtype b'+1:lemma:ph5' |
| 313 | -3.267178 pH b'lemma:.5' | 313 | +2.591172 Gtype b'lemma:flagtag' |
| 314 | -3.267178 pH b'-1:lemma:ph5' | 314 | +2.589296 Med b'lemma:L' |
| 315 | -3.266678 Air b'lemma:anaerobically' | 315 | +2.589296 Med b'+1:lemma:broth' |
| 316 | -3.258256 Med b'-1:lemma:LB' | 316 | +2.584541 Phase b'-1:lemma:until' |
| 317 | -3.245906 O b'lemma:at' | 317 | +2.584059 Gtype b'+1:lemma:knock-out' |
| 318 | -3.227428 Temp b'lemma:43' | 318 | +2.575608 O b'-1:lemma:nh4cl' |
| 319 | -3.174057 O b'postag:DT' | 319 | +2.574656 Technique b'-1:lemma:chip-exo' |
| 320 | -3.124069 O b'-1:lemma:000913' | 320 | +2.564254 Med b'lemma:glucose' |
| 321 | -3.122174 O b'-1:lemma:min' | 321 | +2.556390 Gversion b'lemma:_' |
| 322 | -3.116791 Air b'postag:RB' | 322 | +2.554626 Air b'-1:lemma:_' |
| 323 | -3.107732 O b'lemma:pt7' | 323 | +2.549785 O b'postag:SYM' |
| 324 | -3.040595 Gtype b'lemma:\xce\xb4gadw' | 324 | +2.549729 O b'+1:lemma:mid-log' |
| 325 | -3.006824 O b'-1:lemma:stpa' | 325 | +2.543869 Air b'-1:lemma:phase' |
| 326 | -2.984377 OD b'-1:lemma:~' | 326 | +2.541328 O b'lemma:A' |
| 327 | -2.941221 Supp b'-1:lemma:\xc2\xb5m' | 327 | +2.537440 Gtype b'-1:lemma:_' |
| 328 | -2.928646 Gversion b'lemma:_' | 328 | +2.525410 Supp b'lemma:leucine' |
| 329 | -2.927017 Gtype b'lemma:soxs-8myc' | 329 | +2.522615 O b'lemma:lrp' |
| 330 | -2.927017 Gtype b'lemma:soxr-8myc' | 330 | +2.522036 Gtype b'-1:lemma:express' |
| 331 | -2.916978 O b'+1:lemma:mid-log' | 331 | +2.521629 O b'-1:lemma:\xc2\xb0c' |
| 332 | -2.899360 OD b'lemma:0.35' | 332 | +2.520010 O b'lemma:csir' |
| 333 | -2.886577 Supp b'+1:lemma:iptg' | 333 | +2.520010 O b'lemma:ntrc' |
| 334 | -2.876433 Supp b'lemma:leucine' | 334 | +2.474244 Anti b'+1:lemma:antibody' |
| 335 | -2.857437 Gtype b'lemma:purr-8myc' | 335 | +2.461694 Supp b'+1:lemma:leucine' |
| 336 | -2.854621 O b'postag:SYM' | 336 | +2.454280 O b'lemma:genotype/variation' |
| 337 | 337 | ||
| 338 | 338 | ||
| 339 | Top negative: | 339 | Top negative: |
| 340 | --0.011735 OD b'+1:lemma:0.4' | 340 | +-0.120022 Gtype b'-1:postag:,' |
| 341 | --0.012143 O b'+1:lemma:0.4' | 341 | +-0.120523 O b'-1:lemma:in' |
| 342 | --0.012737 OD b'+1:postag:DT' | 342 | +-0.122664 O b'+1:lemma:sample' |
| 343 | --0.013567 Gtype b'+1:postag:IN' | 343 | +-0.127328 O b'+1:lemma:mm' |
| 344 | --0.014658 Supp b'-1:postag:NN' | 344 | +-0.133270 OD b'+1:postag:CD' |
| 345 | --0.015388 O b'+1:lemma:co2' | 345 | +-0.138198 O b'-1:lemma:affinity' |
| 346 | --0.019498 O b'+1:lemma:25' | 346 | +-0.142281 O b'lemma:paraquat' |
| 347 | --0.024384 O b'-1:lemma:mm' | 347 | +-0.145257 O b'+1:lemma:-rrb-' |
| 348 | --0.026473 OD b'+1:lemma:~' | 348 | +-0.146006 Supp b'lemma:2' |
| 349 | --0.029376 Supp b'-1:lemma:and' | 349 | +-0.150887 Anti b'-1:postag:NN' |
| 350 | --0.030278 O b'lemma:\xc2\xb0c' | 350 | +-0.154225 Gtype b'lemma:_' |
| 351 | --0.033870 Gtype b'-1:lemma:mg1655' | 351 | +-0.158596 Gtype b'+1:postag:NNS' |
| 352 | --0.035964 O b'+1:lemma:rep1' | 352 | +-0.161604 O b'-1:postag:IN' |
| 353 | --0.036870 Anti b'-1:postag:NN' | 353 | +-0.163779 Gtype b'+1:lemma:b' |
| 354 | --0.037674 Med b'-1:lemma:m63' | 354 | +-0.166301 O b'-1:lemma:chip-exo' |
| 355 | --0.041457 O b'-1:lemma:for' | 355 | +-0.167220 O b'-1:lemma:of' |
| 356 | --0.042315 O b'-1:lemma:in' | 356 | +-0.171664 O b'-1:lemma:-lrb-' |
| 357 | --0.043253 O b'+1:lemma:5' | 357 | +-0.180434 Gversion b'+1:postag:NN' |
| 358 | --0.054536 O b'+1:lemma:antibody' | 358 | +-0.192357 O b'lemma:o2' |
| 359 | --0.056675 OD b'+1:postag:CD' | 359 | +-0.202260 O b'lemma:e.' |
| 360 | --0.057484 O b'-1:postag:VBN' | 360 | +-0.206741 Gtype b'+1:lemma:a' |
| 361 | --0.057779 O b'postag:RB' | 361 | +-0.208788 O b'+1:postag:-RRB-' |
| 362 | --0.061765 O b'-1:lemma:at' | 362 | +-0.212004 O b'-1:lemma:e.' |
| 363 | --0.063699 O b'-1:lemma:of' | 363 | +-0.218110 O b'-1:postag:-LRB-' |
| 364 | --0.073053 Phase b'+1:postag:NN' | 364 | +-0.235338 O b'+1:lemma:antibody' |
| 365 | --0.081144 O b'-1:lemma:o2' | 365 | +-0.236328 O b'+1:lemma:b' |
| 366 | --0.083185 O b'+1:lemma:-lcb-' | 366 | +-0.239367 Anti b'+1:postag:JJ' |
| 367 | --0.085303 O b'lemma:o2' | 367 | +-0.249593 Gtype b'-1:lemma:mg1655' |
| 368 | --0.090545 Gversion b'-1:postag:NN' | 368 | +-0.249870 Supp b'-1:postag:NNP' |
| 369 | --0.090810 Gtype b'lemma:fnr' | 369 | +-0.251500 O b'+1:lemma:delta' |
| 370 | --0.094072 O b'-1:postag:IN' | 370 | +-0.252232 Supp b'+1:postag:IN' |
| 371 | --0.095560 O b'+1:lemma:300' | 371 | +-0.256537 O b'-1:lemma:20' |
| 372 | --0.095835 O b'+1:lemma:culture' | 372 | +-0.258317 O b'lemma:grow' |
| 373 | --0.099835 Gtype b'-1:postag:NN' | 373 | +-0.269042 O b'lemma:medium' |
| 374 | --0.104011 Gtype b'-1:postag:DT' | 374 | +-0.273182 Temp b'-1:postag:IN' |
| 375 | --0.104295 O b'-1:lemma:-lrb-' | 375 | +-0.274173 Gtype b'-1:postag:CD' |
| 376 | --0.104392 O b'+1:postag:CD' | 376 | +-0.280038 O b'lemma:8' |
| 377 | --0.106605 O b'lemma:e.' | 377 | +-0.280993 O b'lemma:n2' |
| 378 | --0.114926 O b'lemma:aerobically' | 378 | +-0.288611 Supp b'-1:lemma:-' |
| 379 | --0.123054 Supp b'-1:lemma:-' | 379 | +-0.293962 Gtype b'lemma:ompr' |
| 380 | --0.124613 O b'-1:postag:-LRB-' | 380 | +-0.301245 Strain b'+1:postag:NN' |
| 381 | --0.130629 O b'lemma:lb' | 381 | +-0.303251 Med b'-1:lemma:MOPS' |
| 382 | --0.135809 O b'-1:lemma:delta' | 382 | +-0.306188 O b'-1:lemma:0.1' |
| 383 | --0.137484 O b'+1:lemma:delta' | 383 | +-0.306847 O b'-1:lemma:n2' |
| 384 | --0.145435 O b'-1:lemma:30' | 384 | +-0.308913 O b'+1:lemma:0.4' |
| 385 | --0.147772 Phase b'lemma:pahse' | 385 | +-0.314484 Temp b'postag:JJ' |
| 386 | --0.151829 O b'-1:lemma:e.' | 386 | +-0.318718 Med b'+1:postag:IN' |
| 387 | --0.152470 Phase b'+1:lemma:pahse' | 387 | +-0.318797 Gtype b'postag:NNS' |
| 388 | --0.153511 O b'+1:lemma:arginine' | 388 | +-0.319631 Supp b'+1:lemma:glucose' |
| 389 | --0.156235 Temp b'-1:postag:IN' | 389 | +-0.321045 O b'lemma:m63' |
| 390 | --0.165736 O b'lemma:n2' | 390 | +-0.324374 O b'lemma:aerobically' |
| 391 | --0.167320 O b'lemma:m63' | 391 | +-0.325816 O b'lemma:30' |
| 392 | --0.171593 O b'lemma:mg1655' | 392 | +-0.326188 Med b'-1:postag:CD' |
| 393 | --0.171854 O b'lemma:mg/ml' | 393 | +-0.329836 Phase b'-1:lemma:at' |
| 394 | --0.171854 O b'-1:lemma:150' | 394 | +-0.332152 O b'+1:postag:VB' |
| 395 | --0.172097 O b'+1:lemma:grow' | 395 | +-0.332842 Med b'postag:CD' |
| 396 | --0.174184 O b'+1:lemma:-rrb-' | 396 | +-0.334256 O b'lemma:co2' |
| 397 | --0.176692 O b'lemma:medium' | 397 | +-0.334810 O b'lemma:minimal' |
| 398 | --0.190407 O b'-1:lemma:n2' | 398 | +-0.342218 O b'+1:lemma:minimal' |
| 399 | --0.193709 Technique b'-1:lemma::' | 399 | +-0.349745 Gtype b'+1:lemma:2' |
| 400 | --0.197195 Supp b'+1:lemma:rifampicin' | 400 | +-0.351934 Supp b'lemma:and' |
| 401 | --0.199110 Supp b'+1:lemma:acetate' | 401 | +-0.354493 O b'-1:lemma:minimal' |
| 402 | --0.211904 Supp b'lemma:and' | 402 | +-0.358012 O b'lemma:mg1655' |
| 403 | --0.212434 O b'-1:lemma:fresh' | 403 | +-0.358237 O b'+1:lemma:.' |
| 404 | --0.215208 Med b'+1:postag:CC' | 404 | +-0.358237 O b'+1:postag:.' |
| 405 | --0.223718 Supp b'+1:postag:VBN' | 405 | +-0.363596 O b'-1:lemma:rna' |
| 406 | --0.225529 Gtype b'+1:lemma:\xe2\x88\x86' | 406 | +-0.370839 O b'+1:lemma:2.0' |
| 407 | --0.227506 O b'-1:lemma:iptg' | 407 | +-0.375043 Supp b'-1:postag:NN' |
| 408 | --0.228252 O b'lemma:grow' | 408 | +-0.376200 O b'-1:lemma:with' |
| 409 | --0.244665 O b'+1:postag:-RRB-' | 409 | +-0.392061 O b'+1:lemma:cell' |
| 410 | --0.248414 Phase b'-1:lemma:at' | 410 | +-0.395304 O b'-1:lemma:g/l' |
| 411 | --0.252297 O b'lemma:co2' | 411 | +-0.395511 Technique b'-1:lemma::' |
| 412 | --0.262234 O b'+1:lemma:until' | 412 | +-0.397546 O b'+1:lemma:shake' |
| 413 | --0.264339 Med b'+1:postag:NNS' | 413 | +-0.401170 O b'lemma:mg/ml' |
| 414 | --0.271018 Supp b'lemma:2' | 414 | +-0.401170 O b'-1:lemma:150' |
| 415 | --0.271420 O b'+1:lemma:mm' | 415 | +-0.409541 O b'-1:lemma:um' |
| 416 | --0.274442 Air b'-1:lemma:or' | 416 | +-0.409541 O b'+1:lemma:paraquat' |
| 417 | --0.275533 Air b'+1:postag:NNP' | 417 | +-0.409762 O b'+1:lemma:from' |
| 418 | --0.282985 O b'lemma:k-12' | 418 | +-0.419746 O b'+1:lemma:300' |
| 419 | --0.283867 pH b'postag:NN' | 419 | +-0.421010 O b'lemma:\xc2\xb0c' |
| 420 | --0.289565 O b'+1:postag:IN' | 420 | +-0.434499 O b'lemma:of' |
| 421 | --0.292519 Gtype b'postag:CD' | 421 | +-0.436286 O b'postag:RB' |
| 422 | --0.299546 Supp b'-1:postag:VBG' | 422 | +-0.439656 Med b'+1:postag:NN' |
| 423 | --0.302599 Supp b'-1:postag:NNP' | 423 | +-0.444355 O b'+1:lemma:dissolve' |
| 424 | --0.304446 OD b'+1:postag:NN' | 424 | +-0.452235 O b'+1:lemma:until' |
| 425 | --0.304579 O b'-1:lemma:0.1' | 425 | +-0.455261 O b'lemma:nacl' |
| 426 | --0.308132 O b'lemma:30' | 426 | +-0.456077 O b'lemma:glucose' |
| 427 | --0.315401 O b'+1:postag:VBG' | 427 | +-0.463464 O b'-1:lemma:grow' |
| 428 | --0.328419 O b'lemma:\xe2\x88\x86' | 428 | +-0.463968 O b'-1:lemma:fresh' |
| 429 | --0.334410 O b'+1:lemma:phase' | 429 | +-0.464076 Phase b'-1:postag:NN' |
| 430 | --0.339050 Med b'postag:CD' | 430 | +-0.486872 O b'-1:lemma:rifampicin' |
| 431 | --0.339573 O b'lemma:cell' | 431 | +-0.523137 O b'+1:postag:IN' |
| 432 | --0.349122 Gversion b'+1:postag:NN' | 432 | +-0.525151 Technique b'-1:postag::' |
| 433 | --0.350590 O b'+1:lemma:cell' | 433 | +-0.531783 O b'+1:lemma:phase' |
| 434 | --0.353274 O b'-1:lemma:from' | 434 | +-0.538887 OD b'+1:postag:NN' |
| 435 | --0.356173 O b'-1:lemma:minimal' | 435 | +-0.555616 O b'+1:lemma:or' |
| 436 | --0.365952 Technique b'-1:postag::' | 436 | +-0.565115 O b'+1:lemma:strain' |
| 437 | --0.377481 O b'lemma:m9' | 437 | +-0.566606 O b'lemma:od600' |
| 438 | --0.387016 O b'-1:lemma:um' | 438 | +-0.578470 Gtype b'-1:postag:SYM' |
| 439 | --0.387016 O b'+1:lemma:paraquat' | 439 | +-0.578637 OD b'lemma:-lrb-' |
| 440 | --0.396762 O b'lemma:minimal' | 440 | +-0.601008 Med b'+1:postag:NNS' |
| 441 | --0.399415 Med b'+1:postag:IN' | 441 | +-0.607701 Med b'postag:-LRB-' |
| 442 | --0.400174 O b'-1:lemma:.' | 442 | +-0.612346 O b'-1:lemma:od600' |
| 443 | --0.400174 O b'-1:postag:.' | 443 | +-0.613297 O b'+1:lemma:%' |
| 444 | --0.405899 Gtype b'+1:lemma:fnr' | 444 | +-0.632846 O b'lemma:dissolve' |
| 445 | --0.420549 Supp b'+1:postag:IN' | 445 | +-0.636917 O b'-1:lemma:cra' |
| 446 | --0.426457 Temp b'postag:NN' | 446 | +-0.637702 O b'+1:lemma:_' |
| 447 | --0.443672 Med b'+1:postag:NN' | 447 | +-0.645606 pH b'postag:NN' |
| 448 | --0.454874 O b'-1:lemma:with' | 448 | +-0.660680 Supp b'postag:CC' |
| 449 | --0.455975 O b'-1:lemma:od600' | 449 | +-0.661544 O b'lemma:phase' |
| 450 | --0.460725 O b'lemma:od600' | 450 | +-0.663541 O b'-1:lemma:co2' |
| 451 | --0.476927 O b'lemma:purify' | 451 | +-0.666296 Temp b'-1:lemma:\xc2\xb0c' |
| 452 | --0.513975 O b'lemma:glucose' | 452 | +-0.668061 Temp b'postag:NN' |
| 453 | --0.514369 O b'+1:lemma:shake' | 453 | +-0.677959 O b'-1:lemma:from' |
| 454 | --0.516980 O b'lemma:anaerobic' | 454 | +-0.689244 Air b'-1:postag:NNP' |
| 455 | --0.543673 O b'+1:lemma:dissolve' | 455 | +-0.689646 OD b'postag:-LRB-' |
| 456 | --0.575481 OD b'+1:postag:CC' | 456 | +-0.695039 O b'-1:lemma:30' |
| 457 | --0.575983 O b'+1:lemma:%' | 457 | +-0.695571 Anti b'+1:lemma:anti-fur' |
| 458 | --0.578458 O b'+1:lemma:\xc2\xb0c' | 458 | +-0.716001 O b'-1:lemma:~' |
| 459 | --0.579234 O b'+1:lemma:.' | 459 | +-0.731399 O b'lemma:150' |
| 460 | --0.579234 O b'+1:postag:.' | 460 | +-0.731399 O b'+1:lemma:mg/ml' |
| 461 | --0.590831 O b'-1:lemma:until' | 461 | +-0.739656 Gtype b'+1:lemma:\xe2\x88\x86' |
| 462 | --0.593646 O b'+1:lemma:minimal' | 462 | +-0.759740 Supp b'+1:postag:VBN' |
| 463 | --0.598050 O b'-1:lemma:rifampicin' | 463 | +-0.763772 O b'+1:lemma:Aerobic' |
| 464 | --0.599013 Anti b'+1:postag:JJ' | 464 | +-0.766890 O b'-1:lemma:\xe2\x88\x86' |
| 465 | --0.600816 O b'-1:lemma:grow' | 465 | +-0.766971 O b'-1:lemma:mid-log' |
| 466 | --0.609501 O b'+1:postag:NNS' | 466 | +-0.768804 OD b'+1:lemma:and' |
| 467 | --0.616694 O b'lemma:mid-log' | 467 | +-0.768894 O b'+1:lemma:\xc2\xb0c' |
| 468 | --0.622505 OD b'lemma:-lrb-' | 468 | +-0.776396 Med b'lemma:-lrb-' |
| 469 | --0.681173 Temp b'postag:JJ' | 469 | +-0.781865 Supp b'+1:lemma:rifampicin' |
| 470 | --0.682190 O b'lemma:\xce\xb4fur' | 470 | +-0.809383 O b'-1:lemma:until' |
| 471 | --0.683721 Phase b'-1:postag:NN' | 471 | +-0.873765 Med b'-1:postag:IN' |
| 472 | --0.699842 O b'-1:lemma:cra' | 472 | +-0.887188 O b'-1:lemma:0.2' |
| 473 | --0.699863 O b'+1:lemma:or' | 473 | +-0.914214 OD b'+1:postag:CC' |
| 474 | --0.706770 OD b'postag:-LRB-' | 474 | +-0.937224 O b'+1:lemma:c' |
| 475 | --0.726480 Anti b'+1:lemma:anti-fur' | 475 | +-0.951430 O b'+1:lemma:arginine' |
| 476 | --0.739377 O b'+1:lemma:0.3' | 476 | +-0.975038 O b'lemma:20' |
| 477 | --0.759701 O b'lemma:0.2' | 477 | +-0.984860 O b'lemma:dpd' |
| 478 | --0.767286 O b'-1:lemma:mid-log' | 478 | +-0.995326 Gtype b'-1:postag:DT' |
| 479 | --0.769781 O b'lemma:dissolve' | 479 | +-0.997365 O b'lemma:mid-log' |
| 480 | --0.773573 O b'+1:lemma:_' | 480 | +-1.001839 O b'-1:lemma:1' |
| 481 | --0.796461 OD b'postag:JJ' | 481 | +-1.007082 Phase b'-1:postag:JJ' |
| 482 | --0.804019 O b'+1:lemma:fecl2' | 482 | +-1.016639 O b'+1:postag:NNS' |
| 483 | --0.817322 O b'+1:lemma:c' | 483 | +-1.024920 O b'lemma:k-12' |
| 484 | --0.823112 O b'-1:lemma:0.2' | 484 | +-1.035792 Gtype b'lemma:delta' |
| 485 | --0.856156 O b'lemma:37' | 485 | +-1.035978 O b'lemma:anaerobically' |
| 486 | --0.874673 O b'-1:lemma:ml' | 486 | +-1.046001 O b'lemma:media' |
| 487 | --0.897793 O b'lemma:dpd' | 487 | +-1.073102 O b'+1:lemma:fecl2' |
| 488 | --0.928954 O b'lemma:0.3' | 488 | +-1.102636 Temp b'+1:lemma:to' |
| 489 | --0.935642 O b'lemma:media' | 489 | +-1.102636 Temp b'+1:postag:TO' |
| 490 | --0.953224 Supp b'postag:CC' | 490 | +-1.121716 Supp b'+1:lemma:acetate' |
| 491 | --0.962174 O b'lemma:150' | 491 | +-1.138292 O b'+1:lemma:supplement' |
| 492 | --0.962174 O b'+1:lemma:mg/ml' | 492 | +-1.168057 O b'lemma:purify' |
| 493 | --0.991546 Temp b'+1:lemma:to' | 493 | +-1.184745 O b'lemma:anaerobic' |
| 494 | --0.991546 Temp b'+1:postag:TO' | 494 | +-1.205475 O b'+1:lemma:rep1' |
| 495 | --0.996229 O b'-1:lemma:co2' | 495 | +-1.215530 O b'lemma:2h' |
| 496 | --1.000642 O b'lemma:of' | 496 | +-1.215530 O b'-1:lemma:additional' |
| 497 | --1.005860 O b'-1:postag::' | 497 | +-1.234334 Air b'-1:postag:JJ' |
| 498 | --1.099013 O b'lemma:20' | 498 | +-1.241734 O b'+1:lemma:0.3' |
| 499 | --1.117230 O b'-1:lemma:~' | 499 | +-1.301983 O b'-1:lemma:dissolve' |
| 500 | --1.139604 Air b'postag:NN' | 500 | +-1.301983 O b'+1:lemma:methanol' |
| 501 | --1.144681 OD b'+1:lemma:and' | 501 | +-1.303550 O b'lemma:0.3' |
| 502 | --1.201437 O b'-1:lemma:dissolve' | 502 | +-1.345097 O b'lemma:0.1' |
| 503 | --1.201437 O b'+1:lemma:methanol' | 503 | +-1.379870 Supp b'-1:postag:VBG' |
| 504 | --1.236667 O b'-1:lemma:sample' | 504 | +-1.382375 O b'+1:lemma:at' |
| 505 | --1.244866 O b'lemma:wt' | 505 | +-1.396032 O b'lemma:\xe2\x88\x86' |
| 506 | --1.252945 O b'+1:lemma:g/l' | 506 | +-1.417143 O b'+1:lemma:in' |
| 507 | --1.255778 O b'-1:lemma:37' | 507 | +-1.417204 O b'lemma:0.2' |
| 508 | --1.264177 Med b'-1:postag:IN' | 508 | +-1.503850 OD b'postag:JJ' |
| 509 | --1.288204 Supp b'-1:lemma:%' | 509 | +-1.525722 O b'lemma:\xce\xb4fur' |
| 510 | --1.302552 O b'lemma:0.1' | 510 | +-1.542072 Air b'postag:NN' |
| 511 | --1.371688 O b'lemma:anaerobically' | 511 | +-1.579787 O b'lemma:37' |
| 512 | --1.410598 O b'lemma:phase' | 512 | +-1.621701 O b'-1:lemma:ml' |
| 513 | --1.489551 O b'+1:lemma:+' | 513 | +-1.630192 O b'-1:lemma:sample' |
| 514 | --1.506032 O b'+1:lemma:supplement' | 514 | +-1.655725 O b'-1:lemma:rpob' |
| 515 | --1.532398 O b'lemma:2h' | 515 | +-1.681294 O b'+1:postag:VBG' |
| 516 | --1.532398 O b'-1:lemma:additional' | 516 | +-1.700082 Air b'+1:postag:JJ' |
| 517 | --1.534894 Air b'+1:postag:JJ' | 517 | +-1.700251 O b'lemma:fecl2' |
| 518 | --1.548281 O b'+1:lemma:in' | 518 | +-1.715116 O b'-1:postag:VBG' |
| 519 | --1.565843 Anti b'postag:NNP' | 519 | +-1.721605 O b'lemma:wt' |
| 520 | --1.638452 O b'postag:VBP' | 520 | +-1.755559 O b'-1:lemma:IP' |
| 521 | --1.657980 O b'lemma:rifampicin' | 521 | +-1.757192 O b'-1:postag::' |
| 522 | --1.822232 O b'+1:lemma:at' | 522 | +-1.825748 O b'+1:lemma:g/l' |
| 523 | --1.836234 O b'-1:postag:VBG' | 523 | +-1.826698 Supp b'-1:lemma:%' |
| 524 | --1.854980 O b'-1:lemma:IP' | 524 | +-1.900808 O b'-1:lemma:ompr' |
| 525 | --1.925222 O b'-1:lemma:2' | 525 | +-1.900850 Supp b'postag:JJ' |
| 526 | --1.936575 O b'lemma:fecl2' | 526 | +-2.012610 O b'lemma:methanol' |
| 527 | --1.945977 Air b'-1:postag:JJ' | 527 | +-2.081277 Anti b'postag:NNP' |
| 528 | --2.044512 O b'-1:lemma:nsrr' | 528 | +-2.159396 O b'-1:lemma:nsrr' |
| 529 | --2.267485 Phase b'-1:postag:JJ' | 529 | +-2.166881 O b'postag:VBP' |
| 530 | --2.297463 O b'-1:lemma:rpob' | 530 | +-2.270620 O b'lemma:rifampicin' |
| 531 | --2.299343 O b'+1:lemma:hour' | 531 | +-2.391350 O b'-1:lemma:2' |
| 532 | --2.321612 O b'lemma:methanol' | 532 | +-2.579475 O b'+1:lemma:2' |
| 533 | --2.467134 O b'-1:lemma:ompr' | 533 | +-2.672474 O b'-1:lemma:37' |
| 534 | --2.690673 Supp b'postag:JJ' | 534 | +-2.981970 O b'+1:lemma:1' |
| 535 | --3.133082 O b'+1:lemma:2' | 535 | +-3.081557 O b'+1:lemma:hour' |
| 536 | --3.547425 Phase b'postag:JJ' | 536 | +-3.094094 O b'+1:lemma:+' |
| 537 | --3.603436 O b'+1:lemma:1' | 537 | +-3.525755 Phase b'postag:JJ' |
| 538 | --4.365017 O b'-1:lemma:_' | 538 | +-3.662675 O b'-1:lemma:_' |
| 539 | --5.016691 O b'-1:lemma::' | 539 | +-4.650283 O b'-1:lemma::' |
| 540 | 540 | ... | ... |
CRF/reports/report_Run1_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.014516456694382724, 'c2': 0.020326963729101803} | ||
| 5 | +best CV score:0.7978697547192418 | ||
| 6 | +model size: 0.10M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7980283470747447 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.789 0.405 0.536 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.897 0.912 0.904 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.667 0.800 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.862 0.764 0.810 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.869 0.684 0.765 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.861 0.754 0.798 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 5.560370 | ||
| 32 | +Med -> Med 5.323219 | ||
| 33 | +Agit -> Agit 5.320147 | ||
| 34 | +Anti -> Anti 5.296542 | ||
| 35 | +Temp -> Temp 5.103287 | ||
| 36 | +O -> O 4.922938 | ||
| 37 | +Air -> Air 4.793927 | ||
| 38 | +Gversion -> Gversion 4.409724 | ||
| 39 | +Phase -> Phase 4.282790 | ||
| 40 | +Gtype -> Gtype 4.185033 | ||
| 41 | +Supp -> Supp 3.873567 | ||
| 42 | +Technique -> Technique 3.092187 | ||
| 43 | +pH -> pH 2.533873 | ||
| 44 | +Substrain -> Gtype 2.083775 | ||
| 45 | +O -> Supp 1.586928 | ||
| 46 | +Gtype -> Supp 1.409951 | ||
| 47 | +O -> Technique 1.210201 | ||
| 48 | +Air -> O 1.150012 | ||
| 49 | +O -> Gtype 1.137322 | ||
| 50 | +Technique -> Air 0.988159 | ||
| 51 | +O -> Temp 0.874873 | ||
| 52 | +Gtype -> pH 0.834090 | ||
| 53 | +O -> Anti 0.676973 | ||
| 54 | +Gtype -> Air 0.351268 | ||
| 55 | +O -> pH 0.312385 | ||
| 56 | +O -> Gversion 0.250755 | ||
| 57 | +O -> Strain 0.242825 | ||
| 58 | +Med -> O 0.156921 | ||
| 59 | +Phase -> O 0.156793 | ||
| 60 | +O -> Vess 0.116805 | ||
| 61 | +Strain -> O 0.014803 | ||
| 62 | +Phase -> Anti -0.000003 | ||
| 63 | +O -> Med -0.000752 | ||
| 64 | +Temp -> O -0.003264 | ||
| 65 | +Anti -> Gversion -0.005246 | ||
| 66 | +Substrain -> OD -0.006112 | ||
| 67 | +Anti -> O -0.012910 | ||
| 68 | +Vess -> Temp -0.013445 | ||
| 69 | +Gtype -> Strain -0.014292 | ||
| 70 | +Gtype -> Agit -0.018808 | ||
| 71 | +Agit -> Air -0.019198 | ||
| 72 | +pH -> Gversion -0.019841 | ||
| 73 | +Gtype -> Vess -0.027646 | ||
| 74 | +Anti -> pH -0.041855 | ||
| 75 | +Supp -> Substrain -0.048654 | ||
| 76 | +pH -> O -0.051317 | ||
| 77 | +pH -> Temp -0.051548 | ||
| 78 | +OD -> Strain -0.053471 | ||
| 79 | +Technique -> Phase -0.059693 | ||
| 80 | +Air -> Anti -0.065992 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Gversion -> Technique -0.391299 | ||
| 85 | +Gversion -> Supp -0.406688 | ||
| 86 | +Technique -> Gversion -0.428288 | ||
| 87 | +Supp -> Vess -0.430488 | ||
| 88 | +Phase -> Supp -0.437798 | ||
| 89 | +Technique -> O -0.448599 | ||
| 90 | +Air -> Gtype -0.476159 | ||
| 91 | +Anti -> Gtype -0.500852 | ||
| 92 | +Supp -> pH -0.583991 | ||
| 93 | +Air -> Temp -0.602302 | ||
| 94 | +OD -> Anti -0.617350 | ||
| 95 | +Gversion -> Air -0.617810 | ||
| 96 | +OD -> Technique -0.621252 | ||
| 97 | +Gtype -> Phase -0.623518 | ||
| 98 | +Gtype -> Technique -0.650072 | ||
| 99 | +OD -> Supp -0.671572 | ||
| 100 | +Technique -> Supp -0.688870 | ||
| 101 | +Supp -> Phase -0.709665 | ||
| 102 | +Air -> Med -0.773311 | ||
| 103 | +Med -> Air -0.783002 | ||
| 104 | +Gtype -> Gversion -0.797279 | ||
| 105 | +Anti -> OD -0.803027 | ||
| 106 | +Supp -> Temp -0.806667 | ||
| 107 | +OD -> Temp -0.831917 | ||
| 108 | +Gtype -> Med -0.857691 | ||
| 109 | +Supp -> Anti -0.870891 | ||
| 110 | +Supp -> Gversion -0.871973 | ||
| 111 | +Phase -> Technique -0.889830 | ||
| 112 | +Air -> Supp -0.929944 | ||
| 113 | +OD -> Med -0.949017 | ||
| 114 | +Temp -> Med -0.966397 | ||
| 115 | +Agit -> O -1.011105 | ||
| 116 | +Gtype -> Anti -1.040477 | ||
| 117 | +Supp -> Gtype -1.040776 | ||
| 118 | +Supp -> Technique -1.044847 | ||
| 119 | +Supp -> OD -1.045914 | ||
| 120 | +OD -> O -1.090042 | ||
| 121 | +O -> Air -1.160281 | ||
| 122 | +OD -> Air -1.213400 | ||
| 123 | +OD -> Gtype -1.220713 | ||
| 124 | +Supp -> Air -1.227062 | ||
| 125 | +Air -> OD -1.334679 | ||
| 126 | +Technique -> Gtype -1.446717 | ||
| 127 | +Substrain -> O -1.450017 | ||
| 128 | +Gtype -> OD -1.452352 | ||
| 129 | +Supp -> Med -1.509084 | ||
| 130 | +Technique -> pH -1.527185 | ||
| 131 | +Technique -> OD -1.622827 | ||
| 132 | +Med -> Supp -2.072342 | ||
| 133 | +Phase -> OD -2.635203 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +7.689893 O b'lemma:_' | ||
| 138 | +6.547225 O b'lemma:1' | ||
| 139 | +6.266708 Phase b'lemma:stationary' | ||
| 140 | +6.090095 Supp b'lemma:Iron' | ||
| 141 | +5.988669 Air b'lemma:anaerobic' | ||
| 142 | +5.820969 O b'lemma:2' | ||
| 143 | +5.673994 Strain b'lemma:k-12' | ||
| 144 | +5.616058 Technique b'lemma:ChIP-exo' | ||
| 145 | +5.566871 Technique b'lemma:chipseq' | ||
| 146 | +5.425819 O b'lemma:rpob' | ||
| 147 | +5.405712 Air b'lemma:aerobic' | ||
| 148 | +5.246162 Phase b'lemma:mid-log' | ||
| 149 | +5.241102 O b'lemma:3' | ||
| 150 | +5.223694 Supp b'lemma:pq' | ||
| 151 | +4.895058 Gtype b'lemma:arca8myc' | ||
| 152 | +4.866546 O b'lemma:rep1' | ||
| 153 | +4.849967 Gtype b'lemma:flag-tag' | ||
| 154 | +4.849967 Gtype b'-1:lemma:c-terminal' | ||
| 155 | +4.824569 Supp b'lemma:nh4cl' | ||
| 156 | +4.797323 Gtype b'lemma:\xce\xb4cra' | ||
| 157 | +4.775172 Gversion b'lemma:asm584v2' | ||
| 158 | +4.709551 O b'lemma:Cra' | ||
| 159 | +4.640113 O b'lemma:rep2' | ||
| 160 | +4.639482 Supp b'lemma:glucose' | ||
| 161 | +4.557425 Air b'-1:lemma:ChIP-Seq' | ||
| 162 | +4.515191 O b'-1:lemma:tag' | ||
| 163 | +4.493134 Substrain b'lemma:mg1655' | ||
| 164 | +4.481774 O b'lemma:rep3' | ||
| 165 | +4.480956 Med b'lemma:MOPS' | ||
| 166 | +4.471922 Gtype b'lemma:wt' | ||
| 167 | +4.376044 Supp b'lemma:acetate' | ||
| 168 | +4.334523 Med b'lemma:lb' | ||
| 169 | +4.283076 Supp b'+1:lemma:\xc2\xb5m' | ||
| 170 | +4.262932 Supp b'lemma:nitrate' | ||
| 171 | +4.214237 Gtype b'lemma:delta-arca' | ||
| 172 | +4.182534 Med b'lemma:LB' | ||
| 173 | +4.133282 Supp b'lemma:no3' | ||
| 174 | +4.105821 Technique b'lemma:rna-seq' | ||
| 175 | +4.070487 Gtype b'lemma:fnr8myc' | ||
| 176 | +4.070471 Air b'lemma:Aerobic' | ||
| 177 | +4.038314 O b'-1:lemma:Aerobic' | ||
| 178 | +4.015333 Anti b'lemma:none' | ||
| 179 | +3.997371 O b'lemma:b' | ||
| 180 | +3.963707 O b'postag:IN' | ||
| 181 | +3.955535 O b'lemma:a' | ||
| 182 | +3.955270 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 183 | +3.924171 Supp b'lemma:Fe' | ||
| 184 | +3.902126 Anti b'lemma:seqa' | ||
| 185 | +3.896361 O b'lemma:\xcf\x8332' | ||
| 186 | +3.864684 Technique b'lemma:chip-seq' | ||
| 187 | +3.813831 Technique b'lemma:rnaseq' | ||
| 188 | +3.720604 Supp b'-1:lemma:Cra' | ||
| 189 | +3.706354 O b'lemma:.' | ||
| 190 | +3.706354 O b'postag:.' | ||
| 191 | +3.645774 Gtype b'lemma:delta-fnr' | ||
| 192 | +3.637816 O b'+1:postag:RB' | ||
| 193 | +3.621220 Supp b'lemma:dpd' | ||
| 194 | +3.613509 O b'lemma:CEL' | ||
| 195 | +3.579889 O b'postag::' | ||
| 196 | +3.569191 Supp b'+1:lemma:Deficient' | ||
| 197 | +3.564359 O b'-1:lemma:ChIP-exo' | ||
| 198 | +3.554295 Gversion b'lemma:chip-seq' | ||
| 199 | +3.542155 Supp b'lemma:rifampicin' | ||
| 200 | +3.526053 Supp b'lemma:fructose' | ||
| 201 | +3.521805 O b'lemma:Custom' | ||
| 202 | +3.473156 OD b'lemma:od450' | ||
| 203 | +3.342102 Air b'postag:RB' | ||
| 204 | +3.326021 Gtype b'+1:lemma:with' | ||
| 205 | +3.297006 O b'lemma:with' | ||
| 206 | +3.288934 Med b'lemma:m63' | ||
| 207 | +3.287331 Supp b'lemma:arginine' | ||
| 208 | +3.278166 Supp b'+1:lemma:1' | ||
| 209 | +3.240003 Med b'+1:lemma:0.4' | ||
| 210 | +3.218381 O b'lemma:-' | ||
| 211 | +3.216059 Gtype b'lemma:type' | ||
| 212 | +3.202503 Gtype b'lemma:\xce\xb4fur' | ||
| 213 | +3.194189 Gtype b'+1:lemma:type' | ||
| 214 | +3.193082 O b'-1:lemma:0.3-0.35' | ||
| 215 | +3.189850 OD b'lemma:od600' | ||
| 216 | +3.166033 O b'-1:lemma:glucose' | ||
| 217 | +3.165613 O b'lemma:chip-arca' | ||
| 218 | +3.154829 Vess b'lemma:flask' | ||
| 219 | +3.154829 Vess b'-1:lemma:warm' | ||
| 220 | +3.153229 O b'lemma:oxyr' | ||
| 221 | +3.147911 Supp b'-1:lemma:+' | ||
| 222 | +3.129038 Anti b'lemma:anti-myc' | ||
| 223 | +3.109625 O b'lemma:s' | ||
| 224 | +3.097715 Gtype b'lemma:\xe2\x88\x86' | ||
| 225 | +3.093620 O b'lemma:ompr' | ||
| 226 | +3.084476 O b'lemma:affyexp' | ||
| 227 | +3.081752 Gtype b'lemma:wild-type' | ||
| 228 | +3.079295 Gversion b'lemma:nc' | ||
| 229 | +3.078281 Temp b'lemma:\xc2\xb0c' | ||
| 230 | +3.063891 Gtype b'lemma:WT' | ||
| 231 | +3.052218 pH b'lemma:ph5' | ||
| 232 | +3.052218 pH b'+1:lemma:.5' | ||
| 233 | +3.037788 O b'+1:lemma:anti-fur' | ||
| 234 | +3.014541 Gtype b'lemma:\xce\xb4soxs' | ||
| 235 | +3.011193 O b'+1:lemma:od600' | ||
| 236 | +3.008729 O b'lemma:argr' | ||
| 237 | +3.008102 O b'-1:lemma:lb' | ||
| 238 | +2.997116 Strain b'+1:lemma:substr' | ||
| 239 | +2.984041 Supp b'+1:lemma:hour' | ||
| 240 | +2.972494 O b'-1:lemma:anaerobic' | ||
| 241 | +2.971809 O b'+1:lemma:mid-log' | ||
| 242 | +2.955837 Gtype b'lemma:nsrr' | ||
| 243 | +2.926831 O b'lemma:purr' | ||
| 244 | +2.916380 Gversion b'lemma:.2' | ||
| 245 | +2.916380 Gversion b'-1:lemma:u00096' | ||
| 246 | +2.905573 Air b'lemma:Anaerobic' | ||
| 247 | +2.889288 O b'postag:VBN' | ||
| 248 | +2.860540 O b'-1:lemma:stpa' | ||
| 249 | +2.860204 Gversion b'lemma:u00096' | ||
| 250 | +2.860204 Gversion b'+1:lemma:.2' | ||
| 251 | +2.852943 Gtype b'lemma:\xce\xb4ompr' | ||
| 252 | +2.843988 Technique b'lemma:ChIP-Seq' | ||
| 253 | +2.824246 O b'+1:lemma:pq' | ||
| 254 | +2.822786 Supp b'+1:lemma:2' | ||
| 255 | +2.803844 Supp b'lemma:Leu' | ||
| 256 | +2.775354 O b'lemma:or' | ||
| 257 | +2.765101 O b'lemma:for' | ||
| 258 | +2.762328 Gversion b'lemma:000913' | ||
| 259 | +2.728995 Supp b'+1:lemma:_' | ||
| 260 | +2.717013 Gtype b'lemma:ptac' | ||
| 261 | +2.710470 Supp b'lemma:nacl' | ||
| 262 | +2.700499 Gversion b'-1:lemma:nc' | ||
| 263 | +2.693007 O b'lemma:Lrp' | ||
| 264 | +2.666936 Supp b'lemma:Adenine' | ||
| 265 | +2.666749 Gtype b'lemma:deltaseqa' | ||
| 266 | +2.666749 Gtype b'-1:lemma:old' | ||
| 267 | +2.666456 Technique b'-1:lemma:IP' | ||
| 268 | +2.657018 Gtype b'-1:lemma:ptac' | ||
| 269 | +2.656609 O b'+1:lemma:chip-seq' | ||
| 270 | +2.651756 Phase b'lemma:phase' | ||
| 271 | +2.645047 Med b'+1:lemma:2.0' | ||
| 272 | +2.635317 O b'lemma:at' | ||
| 273 | +2.634819 O b'-1:lemma:type' | ||
| 274 | +2.630111 Temp b'-1:lemma:37' | ||
| 275 | +2.603214 Gtype b'-1:lemma:rpob' | ||
| 276 | +2.591068 Phase b'+1:lemma:for' | ||
| 277 | +2.583108 O b'lemma:soxs' | ||
| 278 | +2.583108 O b'lemma:soxr' | ||
| 279 | +2.582233 Med b'+1:lemma:minimal' | ||
| 280 | +2.581503 OD b'+1:lemma:stationary' | ||
| 281 | +2.578479 Gtype b'+1:lemma:pq' | ||
| 282 | +2.546464 O b'lemma:Fur' | ||
| 283 | +2.517595 O b'postag:SYM' | ||
| 284 | +2.510648 Gtype b'+1:lemma:flagtag' | ||
| 285 | +2.478430 Gtype b'lemma:pk4854' | ||
| 286 | +2.476858 O b'lemma:chip' | ||
| 287 | +2.476469 Temp b'lemma:43' | ||
| 288 | +2.467259 Anti b'+1:lemma:antibody' | ||
| 289 | +2.464347 Gtype b'lemma:\xce\xb4oxyr' | ||
| 290 | +2.456036 Technique b'-1:lemma:input' | ||
| 291 | +2.439409 Air b'lemma:anerobically' | ||
| 292 | +2.439013 Supp b'lemma:iptg' | ||
| 293 | +2.427281 Phase b'-1:lemma:until' | ||
| 294 | +2.422079 O b'lemma:pt7' | ||
| 295 | +2.420462 Gtype b'lemma:\xce\xb4soxr' | ||
| 296 | +2.412058 O b'+1:lemma:o.d.' | ||
| 297 | +2.408051 Gtype b'+1:lemma:aerobic' | ||
| 298 | +2.394275 O b'lemma:2-3' | ||
| 299 | +2.382935 Air b'+1:lemma:at' | ||
| 300 | +2.372931 Technique b'-1:lemma:chip-exo' | ||
| 301 | +2.369521 Anti b'lemma:anti-rpos' | ||
| 302 | +2.363747 Substrain b'+1:lemma:phtpg' | ||
| 303 | +2.362943 O b'lemma:chip-fnr' | ||
| 304 | +2.354731 Med b'-1:lemma:ml' | ||
| 305 | +2.334266 Temp b'-1:lemma:43' | ||
| 306 | +2.309210 Gtype b'-1:lemma:nsrr' | ||
| 307 | +2.303678 Med b'postag:NNP' | ||
| 308 | +2.285357 O b'+1:lemma:43' | ||
| 309 | +2.282215 Air b'-1:lemma:-' | ||
| 310 | +2.273224 Gversion b'+1:lemma:000913' | ||
| 311 | +2.271839 Air b'-1:postag::' | ||
| 312 | +2.266287 Technique b'+1:lemma:chip-exo' | ||
| 313 | +2.264396 Med b'lemma:L' | ||
| 314 | +2.264396 Med b'+1:lemma:broth' | ||
| 315 | +2.262410 Air b'lemma:anaerobically' | ||
| 316 | +2.203015 Gtype b'lemma:dfnr' | ||
| 317 | +2.189315 pH b'lemma:.5' | ||
| 318 | +2.189315 pH b'-1:lemma:ph5' | ||
| 319 | +2.188404 Med b'lemma:glucose' | ||
| 320 | +2.187878 Gtype b'-1:lemma:_' | ||
| 321 | +2.186093 O b'postag:CC' | ||
| 322 | +2.181846 Vess b'-1:postag:VBN' | ||
| 323 | +2.178752 O b'-1:lemma:0.3' | ||
| 324 | +2.171387 O b'lemma:culture' | ||
| 325 | +2.168119 Gtype b'+1:lemma:ph5' | ||
| 326 | +2.151683 Gtype b'lemma:flagtag' | ||
| 327 | +2.151117 Supp b'+1:lemma:respiratory' | ||
| 328 | +2.148355 Technique b'postag:NNP' | ||
| 329 | +2.143403 Supp b'+1:lemma:leucine' | ||
| 330 | +2.130979 O b'lemma:A' | ||
| 331 | +2.126486 O b'-1:lemma:dpd' | ||
| 332 | +2.125151 O b'lemma:genotype/variation' | ||
| 333 | +2.124402 Air b'-1:lemma:_' | ||
| 334 | +2.119304 Gtype b'-1:lemma:express' | ||
| 335 | +2.116025 O b'-1:lemma:\xc2\xb0c' | ||
| 336 | +2.113245 Med b'-1:lemma:LB' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.149474 O b'-1:lemma:150' | ||
| 341 | +-0.156324 Supp b'+1:lemma:glucose' | ||
| 342 | +-0.166525 O b'+1:lemma:or' | ||
| 343 | +-0.166657 Gtype b'+1:lemma:cra' | ||
| 344 | +-0.169192 Air b'postag:CD' | ||
| 345 | +-0.171249 O b'-1:lemma:delta' | ||
| 346 | +-0.175879 Gtype b'lemma:ompr' | ||
| 347 | +-0.178610 O b'-1:lemma:-lrb-' | ||
| 348 | +-0.179471 O b'+1:lemma:mm' | ||
| 349 | +-0.183332 O b'lemma:e.' | ||
| 350 | +-0.187133 O b'lemma:paraquat' | ||
| 351 | +-0.187912 O b'-1:lemma:purify' | ||
| 352 | +-0.190418 O b'-1:lemma:of' | ||
| 353 | +-0.193237 O b'-1:lemma:the' | ||
| 354 | +-0.196917 Gtype b'-1:lemma:,' | ||
| 355 | +-0.196917 Gtype b'-1:postag:,' | ||
| 356 | +-0.207686 O b'-1:postag:VBP' | ||
| 357 | +-0.211483 Gtype b'-1:lemma:-lrb-' | ||
| 358 | +-0.212783 O b'lemma:aerobically' | ||
| 359 | +-0.213130 O b'-1:lemma:e.' | ||
| 360 | +-0.215721 O b'+1:postag:-RRB-' | ||
| 361 | +-0.215839 Supp b'+1:postag:IN' | ||
| 362 | +-0.218911 Supp b'lemma:and' | ||
| 363 | +-0.223065 Med b'+1:lemma:media' | ||
| 364 | +-0.225231 Gtype b'lemma:control' | ||
| 365 | +-0.230542 Supp b'-1:postag:NN' | ||
| 366 | +-0.230830 O b'-1:postag:-LRB-' | ||
| 367 | +-0.235271 Gtype b'-1:lemma:mg1655' | ||
| 368 | +-0.251142 Med b'-1:postag:NN' | ||
| 369 | +-0.251447 Temp b'-1:postag:IN' | ||
| 370 | +-0.253195 O b'+1:lemma:from' | ||
| 371 | +-0.254622 Gtype b'postag:CD' | ||
| 372 | +-0.254892 O b'lemma:lb' | ||
| 373 | +-0.256765 O b'-1:lemma:300' | ||
| 374 | +-0.260131 Gtype b'+1:lemma:a' | ||
| 375 | +-0.260302 Med b'-1:postag:CD' | ||
| 376 | +-0.260618 O b'+1:lemma:antibody' | ||
| 377 | +-0.264891 O b'lemma:m63' | ||
| 378 | +-0.266272 O b'+1:lemma:.' | ||
| 379 | +-0.266272 O b'+1:postag:.' | ||
| 380 | +-0.266629 O b'-1:lemma:with' | ||
| 381 | +-0.268778 Med b'-1:lemma:MOPS' | ||
| 382 | +-0.269344 Phase b'-1:lemma:at' | ||
| 383 | +-0.269854 Gtype b'+1:lemma:2' | ||
| 384 | +-0.272035 Gtype b'postag:NNS' | ||
| 385 | +-0.274858 O b'-1:lemma:minimal' | ||
| 386 | +-0.277854 O b'lemma:n2' | ||
| 387 | +-0.278065 O b'lemma:grow' | ||
| 388 | +-0.278999 O b'lemma:8' | ||
| 389 | +-0.281569 Med b'+1:postag:NNS' | ||
| 390 | +-0.293395 O b'lemma:minimal' | ||
| 391 | +-0.295919 O b'-1:lemma:mm' | ||
| 392 | +-0.305450 Gtype b'+1:lemma:b' | ||
| 393 | +-0.305852 Gtype b'+1:postag:NNS' | ||
| 394 | +-0.307660 Supp b'postag:CC' | ||
| 395 | +-0.307762 Technique b'-1:lemma::' | ||
| 396 | +-0.307991 OD b'+1:lemma:in' | ||
| 397 | +-0.317047 O b'-1:lemma:rna' | ||
| 398 | +-0.320066 O b'lemma:co2' | ||
| 399 | +-0.325889 O b'+1:lemma:0.4' | ||
| 400 | +-0.328270 O b'+1:lemma:-lcb-' | ||
| 401 | +-0.339366 O b'-1:lemma:n2' | ||
| 402 | +-0.341156 Temp b'postag:JJ' | ||
| 403 | +-0.344639 Gtype b'lemma:_' | ||
| 404 | +-0.356368 Gtype b'-1:postag:CD' | ||
| 405 | +-0.357550 O b'lemma:30' | ||
| 406 | +-0.367269 O b'postag:RB' | ||
| 407 | +-0.374575 O b'-1:lemma:0.1' | ||
| 408 | +-0.377633 O b'+1:postag:IN' | ||
| 409 | +-0.390722 O b'+1:lemma:delta' | ||
| 410 | +-0.393066 O b'-1:lemma:iptg' | ||
| 411 | +-0.393438 O b'-1:lemma:20' | ||
| 412 | +-0.397913 Technique b'-1:postag::' | ||
| 413 | +-0.402618 O b'-1:lemma:chip-exo' | ||
| 414 | +-0.404112 O b'-1:lemma:grow' | ||
| 415 | +-0.409921 Anti b'+1:postag:JJ' | ||
| 416 | +-0.417260 O b'-1:lemma:g/l' | ||
| 417 | +-0.428925 O b'lemma:glucose' | ||
| 418 | +-0.432215 Med b'+1:postag:IN' | ||
| 419 | +-0.434983 OD b'+1:postag:NN' | ||
| 420 | +-0.441704 O b'+1:lemma:phase' | ||
| 421 | +-0.446493 O b'+1:lemma:shake' | ||
| 422 | +-0.450617 O b'-1:lemma:30' | ||
| 423 | +-0.457886 O b'+1:lemma:%' | ||
| 424 | +-0.468431 OD b'+1:postag:CC' | ||
| 425 | +-0.468469 O b'lemma:of' | ||
| 426 | +-0.472653 O b'+1:lemma:cell' | ||
| 427 | +-0.473701 Temp b'-1:lemma:\xc2\xb0c' | ||
| 428 | +-0.476616 O b'-1:lemma:cra' | ||
| 429 | +-0.480503 O b'+1:lemma:dissolve' | ||
| 430 | +-0.480603 Med b'lemma:-lrb-' | ||
| 431 | +-0.484800 OD b'+1:lemma:and' | ||
| 432 | +-0.485490 O b'+1:lemma:_' | ||
| 433 | +-0.489193 O b'-1:lemma:affinity' | ||
| 434 | +-0.501511 O b'+1:lemma:strain' | ||
| 435 | +-0.503046 O b'lemma:\xc2\xb0c' | ||
| 436 | +-0.519614 O b'+1:lemma:until' | ||
| 437 | +-0.520710 O b'lemma:nacl' | ||
| 438 | +-0.522191 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 439 | +-0.533499 Med b'postag:CD' | ||
| 440 | +-0.534388 O b'-1:lemma:um' | ||
| 441 | +-0.534388 O b'+1:lemma:paraquat' | ||
| 442 | +-0.534863 pH b'postag:NN' | ||
| 443 | +-0.548817 O b'+1:lemma:300' | ||
| 444 | +-0.557597 O b'-1:lemma:o2' | ||
| 445 | +-0.560591 O b'-1:lemma:mid-log' | ||
| 446 | +-0.563679 O b'-1:lemma:rifampicin' | ||
| 447 | +-0.578432 O b'lemma:phase' | ||
| 448 | +-0.584471 O b'-1:lemma:from' | ||
| 449 | +-0.585725 Air b'-1:lemma:or' | ||
| 450 | +-0.594033 O b'-1:lemma:fresh' | ||
| 451 | +-0.597339 Med b'postag:-LRB-' | ||
| 452 | +-0.604705 OD b'lemma:-lrb-' | ||
| 453 | +-0.615198 O b'-1:lemma:od600' | ||
| 454 | +-0.623443 Supp b'+1:postag:VBN' | ||
| 455 | +-0.646640 O b'+1:lemma:Aerobic' | ||
| 456 | +-0.653308 O b'+1:lemma:b' | ||
| 457 | +-0.657858 Supp b'-1:postag:VBG' | ||
| 458 | +-0.666631 Gtype b'-1:postag:SYM' | ||
| 459 | +-0.704110 OD b'postag:-LRB-' | ||
| 460 | +-0.706773 Gtype b'-1:postag:DT' | ||
| 461 | +-0.707294 O b'lemma:mg1655' | ||
| 462 | +-0.715679 Supp b'+1:lemma:rifampicin' | ||
| 463 | +-0.720336 O b'lemma:dissolve' | ||
| 464 | +-0.723788 O b'+1:lemma:c' | ||
| 465 | +-0.727949 O b'+1:lemma:rep1' | ||
| 466 | +-0.753817 O b'lemma:150' | ||
| 467 | +-0.753817 O b'+1:lemma:mg/ml' | ||
| 468 | +-0.778468 O b'+1:lemma:arginine' | ||
| 469 | +-0.780795 O b'lemma:purify' | ||
| 470 | +-0.809568 Med b'-1:postag:IN' | ||
| 471 | +-0.813987 O b'+1:postag:NNS' | ||
| 472 | +-0.838649 Temp b'+1:lemma:to' | ||
| 473 | +-0.838649 Temp b'+1:postag:TO' | ||
| 474 | +-0.849944 Temp b'postag:NN' | ||
| 475 | +-0.860992 O b'+1:lemma:\xc2\xb0c' | ||
| 476 | +-0.865219 O b'-1:lemma:1' | ||
| 477 | +-0.874261 O b'-1:lemma:\xe2\x88\x86' | ||
| 478 | +-0.881565 O b'-1:lemma:~' | ||
| 479 | +-0.915657 Supp b'-1:lemma:%' | ||
| 480 | +-0.928703 Anti b'+1:lemma:anti-fur' | ||
| 481 | +-0.960297 O b'lemma:20' | ||
| 482 | +-0.970042 O b'+1:lemma:0.3' | ||
| 483 | +-0.979767 O b'lemma:anaerobically' | ||
| 484 | +-0.987659 O b'-1:lemma:co2' | ||
| 485 | +-0.993540 O b'-1:lemma:0.2' | ||
| 486 | +-0.993726 OD b'postag:JJ' | ||
| 487 | +-1.006779 O b'lemma:dpd' | ||
| 488 | +-1.009452 O b'lemma:mid-log' | ||
| 489 | +-1.021860 O b'-1:lemma:until' | ||
| 490 | +-1.039817 Air b'-1:postag:JJ' | ||
| 491 | +-1.045265 O b'lemma:od600' | ||
| 492 | +-1.056795 O b'lemma:media' | ||
| 493 | +-1.088631 O b'+1:lemma:fecl2' | ||
| 494 | +-1.105343 O b'lemma:anaerobic' | ||
| 495 | +-1.112271 O b'lemma:0.2' | ||
| 496 | +-1.113717 O b'lemma:0.3' | ||
| 497 | +-1.126838 O b'lemma:\xe2\x88\x86' | ||
| 498 | +-1.130388 O b'lemma:0.1' | ||
| 499 | +-1.131645 O b'+1:lemma:supplement' | ||
| 500 | +-1.150779 O b'lemma:fecl2' | ||
| 501 | +-1.165447 Phase b'-1:postag:JJ' | ||
| 502 | +-1.167544 Supp b'+1:lemma:acetate' | ||
| 503 | +-1.170520 Gtype b'lemma:delta' | ||
| 504 | +-1.179414 O b'-1:lemma:dissolve' | ||
| 505 | +-1.179414 O b'+1:lemma:methanol' | ||
| 506 | +-1.248724 O b'lemma:2h' | ||
| 507 | +-1.248724 O b'-1:lemma:additional' | ||
| 508 | +-1.254425 O b'+1:lemma:in' | ||
| 509 | +-1.288356 O b'+1:postag:VBG' | ||
| 510 | +-1.296222 O b'+1:lemma:at' | ||
| 511 | +-1.331987 O b'+1:lemma:g/l' | ||
| 512 | +-1.341740 O b'-1:lemma:sample' | ||
| 513 | +-1.346196 O b'-1:postag:VBG' | ||
| 514 | +-1.378677 O b'lemma:\xce\xb4fur' | ||
| 515 | +-1.510150 O b'-1:lemma:ml' | ||
| 516 | +-1.524262 O b'-1:lemma:ompr' | ||
| 517 | +-1.555514 Air b'postag:NN' | ||
| 518 | +-1.598034 O b'-1:postag::' | ||
| 519 | +-1.620081 O b'-1:lemma:rpob' | ||
| 520 | +-1.620254 O b'lemma:k-12' | ||
| 521 | +-1.654660 Supp b'postag:JJ' | ||
| 522 | +-1.689276 O b'-1:lemma:37' | ||
| 523 | +-1.759178 Anti b'postag:NNP' | ||
| 524 | +-1.772606 Air b'+1:postag:JJ' | ||
| 525 | +-1.784898 O b'-1:lemma:nsrr' | ||
| 526 | +-1.793413 O b'lemma:37' | ||
| 527 | +-1.813616 O b'lemma:wt' | ||
| 528 | +-1.828954 O b'postag:VBP' | ||
| 529 | +-1.829052 O b'lemma:methanol' | ||
| 530 | +-1.928972 O b'-1:lemma:IP' | ||
| 531 | +-1.940994 Phase b'postag:JJ' | ||
| 532 | +-1.956302 O b'lemma:rifampicin' | ||
| 533 | +-1.960859 O b'+1:lemma:hour' | ||
| 534 | +-2.041737 O b'-1:lemma:2' | ||
| 535 | +-2.306261 O b'+1:lemma:2' | ||
| 536 | +-2.397974 O b'+1:lemma:+' | ||
| 537 | +-2.892885 O b'+1:lemma:1' | ||
| 538 | +-3.539807 O b'-1:lemma:_' | ||
| 539 | +-3.548713 O b'-1:lemma::' | ||
| 540 | + |
CRF/reports/report_Run1_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.17443878436909793, 'c2': 0.025545309300829405} | ||
| 5 | +best CV score:0.8013809966284335 | ||
| 6 | +model size: 0.07M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7888604569464981 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.889 0.842 0.865 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.444 0.615 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.863 0.774 0.816 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.865 0.662 0.750 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.876 0.735 0.789 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.306877 | ||
| 32 | +OD -> OD 6.147632 | ||
| 33 | +Temp -> Temp 5.545039 | ||
| 34 | +Anti -> Anti 5.171893 | ||
| 35 | +Med -> Med 5.147638 | ||
| 36 | +Air -> Air 4.902392 | ||
| 37 | +Phase -> Phase 4.459229 | ||
| 38 | +O -> O 4.458501 | ||
| 39 | +Gtype -> Gtype 4.423121 | ||
| 40 | +Gversion -> Gversion 4.364069 | ||
| 41 | +Supp -> Supp 4.020395 | ||
| 42 | +Technique -> Technique 3.591576 | ||
| 43 | +O -> Supp 2.031115 | ||
| 44 | +Gtype -> Supp 1.883986 | ||
| 45 | +pH -> pH 1.853329 | ||
| 46 | +Air -> O 1.713991 | ||
| 47 | +Substrain -> Gtype 1.583252 | ||
| 48 | +O -> Gtype 1.310027 | ||
| 49 | +O -> Technique 1.273208 | ||
| 50 | +O -> Anti 0.815027 | ||
| 51 | +Technique -> Air 0.812634 | ||
| 52 | +O -> Temp 0.731105 | ||
| 53 | +Med -> O 0.704800 | ||
| 54 | +Temp -> O 0.557160 | ||
| 55 | +Gtype -> pH 0.523657 | ||
| 56 | +O -> Gversion 0.472268 | ||
| 57 | +Supp -> O 0.279601 | ||
| 58 | +Gtype -> Air 0.238299 | ||
| 59 | +Phase -> O 0.228824 | ||
| 60 | +OD -> Phase 0.203194 | ||
| 61 | +O -> Med 0.116408 | ||
| 62 | +O -> Phase 0.053144 | ||
| 63 | +O -> OD 0.051079 | ||
| 64 | +O -> Strain 0.044893 | ||
| 65 | +Anti -> O 0.000291 | ||
| 66 | +Supp -> OD -0.000005 | ||
| 67 | +Anti -> OD -0.000026 | ||
| 68 | +Technique -> O -0.000302 | ||
| 69 | +Supp -> Technique -0.017197 | ||
| 70 | +Gtype -> Gversion -0.044939 | ||
| 71 | +Gtype -> O -0.049058 | ||
| 72 | +Supp -> Gversion -0.122184 | ||
| 73 | +Supp -> Gtype -0.141890 | ||
| 74 | +Technique -> OD -0.217801 | ||
| 75 | +OD -> Med -0.233349 | ||
| 76 | +Gtype -> Med -0.266427 | ||
| 77 | +OD -> Gtype -0.270554 | ||
| 78 | +OD -> Air -0.350613 | ||
| 79 | +Supp -> Air -0.370520 | ||
| 80 | +Gtype -> Anti -0.385968 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Supp -> Supp 4.020395 | ||
| 85 | +Technique -> Technique 3.591576 | ||
| 86 | +O -> Supp 2.031115 | ||
| 87 | +Gtype -> Supp 1.883986 | ||
| 88 | +pH -> pH 1.853329 | ||
| 89 | +Air -> O 1.713991 | ||
| 90 | +Substrain -> Gtype 1.583252 | ||
| 91 | +O -> Gtype 1.310027 | ||
| 92 | +O -> Technique 1.273208 | ||
| 93 | +O -> Anti 0.815027 | ||
| 94 | +Technique -> Air 0.812634 | ||
| 95 | +O -> Temp 0.731105 | ||
| 96 | +Med -> O 0.704800 | ||
| 97 | +Temp -> O 0.557160 | ||
| 98 | +Gtype -> pH 0.523657 | ||
| 99 | +O -> Gversion 0.472268 | ||
| 100 | +Supp -> O 0.279601 | ||
| 101 | +Gtype -> Air 0.238299 | ||
| 102 | +Phase -> O 0.228824 | ||
| 103 | +OD -> Phase 0.203194 | ||
| 104 | +O -> Med 0.116408 | ||
| 105 | +O -> Phase 0.053144 | ||
| 106 | +O -> OD 0.051079 | ||
| 107 | +O -> Strain 0.044893 | ||
| 108 | +Anti -> O 0.000291 | ||
| 109 | +Supp -> OD -0.000005 | ||
| 110 | +Anti -> OD -0.000026 | ||
| 111 | +Technique -> O -0.000302 | ||
| 112 | +Supp -> Technique -0.017197 | ||
| 113 | +Gtype -> Gversion -0.044939 | ||
| 114 | +Gtype -> O -0.049058 | ||
| 115 | +Supp -> Gversion -0.122184 | ||
| 116 | +Supp -> Gtype -0.141890 | ||
| 117 | +Technique -> OD -0.217801 | ||
| 118 | +OD -> Med -0.233349 | ||
| 119 | +Gtype -> Med -0.266427 | ||
| 120 | +OD -> Gtype -0.270554 | ||
| 121 | +OD -> Air -0.350613 | ||
| 122 | +Supp -> Air -0.370520 | ||
| 123 | +Gtype -> Anti -0.385968 | ||
| 124 | +OD -> O -0.418172 | ||
| 125 | +Technique -> pH -0.477927 | ||
| 126 | +Technique -> Gtype -0.483798 | ||
| 127 | +Agit -> O -0.566238 | ||
| 128 | +Gtype -> OD -0.640169 | ||
| 129 | +O -> Air -0.714813 | ||
| 130 | +Substrain -> O -0.787403 | ||
| 131 | +Supp -> Med -1.021657 | ||
| 132 | +Med -> Supp -1.114839 | ||
| 133 | +Phase -> OD -1.698506 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +7.703197 O b'lemma:_' | ||
| 138 | +6.586493 O b'lemma:1' | ||
| 139 | +6.452806 Supp b'lemma:Iron' | ||
| 140 | +6.361401 Air b'lemma:anaerobic' | ||
| 141 | +5.975656 Air b'lemma:aerobic' | ||
| 142 | +5.920948 Technique b'lemma:ChIP-exo' | ||
| 143 | +5.738728 Strain b'lemma:k-12' | ||
| 144 | +5.658145 Phase b'lemma:stationary' | ||
| 145 | +5.415422 O b'lemma:2' | ||
| 146 | +5.410677 O b'lemma:rpob' | ||
| 147 | +5.181966 Technique b'lemma:chipseq' | ||
| 148 | +5.121249 Air b'-1:lemma:ChIP-Seq' | ||
| 149 | +5.109143 Phase b'lemma:mid-log' | ||
| 150 | +5.088706 O b'lemma:3' | ||
| 151 | +4.962756 Supp b'lemma:nitrate' | ||
| 152 | +4.946743 Supp b'lemma:pq' | ||
| 153 | +4.905311 O b'postag:IN' | ||
| 154 | +4.838793 Substrain b'lemma:mg1655' | ||
| 155 | +4.488840 Gtype b'lemma:flag-tag' | ||
| 156 | +4.488840 Gtype b'-1:lemma:c-terminal' | ||
| 157 | +4.477738 Gversion b'lemma:asm584v2' | ||
| 158 | +4.418207 O b'lemma:rep1' | ||
| 159 | +4.390936 Supp b'lemma:nh4cl' | ||
| 160 | +4.364183 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 161 | +4.354227 Gtype b'lemma:\xce\xb4cra' | ||
| 162 | +4.193812 Air b'lemma:Aerobic' | ||
| 163 | +4.171274 Supp b'lemma:glucose' | ||
| 164 | +4.140212 O b'lemma:\xcf\x8332' | ||
| 165 | +4.133873 Supp b'+1:lemma:\xc2\xb5m' | ||
| 166 | +4.133709 O b'lemma:rep2' | ||
| 167 | +4.094915 Med b'lemma:MOPS' | ||
| 168 | +4.091880 O b'postag::' | ||
| 169 | +4.082369 O b'-1:lemma:tag' | ||
| 170 | +4.079739 Med b'lemma:lb' | ||
| 171 | +4.056839 OD b'lemma:od600' | ||
| 172 | +4.039045 Gtype b'lemma:wt' | ||
| 173 | +3.989316 O b'lemma:Cra' | ||
| 174 | +3.968660 Gtype b'lemma:arca8myc' | ||
| 175 | +3.943132 O b'lemma:rep3' | ||
| 176 | +3.855516 Gversion b'lemma:nc' | ||
| 177 | +3.813109 Med b'lemma:LB' | ||
| 178 | +3.805010 O b'-1:lemma:ChIP-exo' | ||
| 179 | +3.780222 O b'lemma:b' | ||
| 180 | +3.776136 O b'lemma:a' | ||
| 181 | +3.762332 Gtype b'lemma:type' | ||
| 182 | +3.692897 Technique b'lemma:ChIP-Seq' | ||
| 183 | +3.685963 Technique b'lemma:rna-seq' | ||
| 184 | +3.608750 Supp b'lemma:Fe' | ||
| 185 | +3.602563 Gtype b'lemma:delta-arca' | ||
| 186 | +3.582946 O b'lemma:Custom' | ||
| 187 | +3.480469 Supp b'lemma:acetate' | ||
| 188 | +3.448871 Gversion b'-1:lemma:nc' | ||
| 189 | +3.444218 Supp b'lemma:no3' | ||
| 190 | +3.437906 O b'lemma:.' | ||
| 191 | +3.437906 O b'postag:.' | ||
| 192 | +3.437516 Technique b'lemma:chip-seq' | ||
| 193 | +3.389135 Supp b'lemma:rifampicin' | ||
| 194 | +3.386406 Gtype b'lemma:fnr8myc' | ||
| 195 | +3.384496 Gtype b'+1:lemma:type' | ||
| 196 | +3.339808 OD b'lemma:od450' | ||
| 197 | +3.322726 Gtype b'lemma:\xe2\x88\x86' | ||
| 198 | +3.304027 Technique b'lemma:rnaseq' | ||
| 199 | +3.256257 O b'+1:lemma:od600' | ||
| 200 | +3.186356 Anti b'lemma:none' | ||
| 201 | +3.181887 Supp b'lemma:dpd' | ||
| 202 | +3.055580 O b'-1:lemma:0.3-0.35' | ||
| 203 | +3.054658 Gtype b'lemma:nsrr' | ||
| 204 | +3.030442 Gtype b'lemma:\xce\xb4fur' | ||
| 205 | +3.025184 Vess b'lemma:flask' | ||
| 206 | +3.025184 Vess b'-1:lemma:warm' | ||
| 207 | +3.015874 O b'lemma:-' | ||
| 208 | +3.009573 Gtype b'lemma:delta-fnr' | ||
| 209 | +2.998130 Supp b'lemma:fructose' | ||
| 210 | +2.988910 O b'lemma:CEL' | ||
| 211 | +2.974937 pH b'lemma:ph5' | ||
| 212 | +2.974937 pH b'+1:lemma:.5' | ||
| 213 | +2.972759 Anti b'+1:lemma:antibody' | ||
| 214 | +2.954856 Med b'+1:lemma:0.4' | ||
| 215 | +2.925179 O b'-1:lemma:Aerobic' | ||
| 216 | +2.879985 O b'+1:postag:RB' | ||
| 217 | +2.865018 Med b'lemma:m63' | ||
| 218 | +2.859747 Gtype b'-1:lemma:ptac' | ||
| 219 | +2.825574 Supp b'lemma:arginine' | ||
| 220 | +2.824511 Technique b'-1:lemma:IP' | ||
| 221 | +2.817298 O b'postag:VBN' | ||
| 222 | +2.813172 Anti b'lemma:seqa' | ||
| 223 | +2.812406 Temp b'-1:lemma:sample' | ||
| 224 | +2.763158 Gtype b'+1:lemma:with' | ||
| 225 | +2.754310 Temp b'lemma:\xc2\xb0c' | ||
| 226 | +2.723063 Supp b'+1:lemma:1' | ||
| 227 | +2.675834 O b'-1:lemma:type' | ||
| 228 | +2.671720 Gversion b'lemma:chip-seq' | ||
| 229 | +2.653537 Supp b'+1:lemma:2' | ||
| 230 | +2.650378 Air b'postag:RB' | ||
| 231 | +2.631712 Gversion b'lemma:u00096' | ||
| 232 | +2.631712 Gversion b'+1:lemma:.2' | ||
| 233 | +2.616863 Supp b'-1:lemma:Cra' | ||
| 234 | +2.615297 O b'-1:lemma:glucose' | ||
| 235 | +2.613954 O b'postag:CC' | ||
| 236 | +2.589956 Gtype b'-1:lemma:rpob' | ||
| 237 | +2.582195 O b'lemma:with' | ||
| 238 | +2.540802 Gversion b'lemma:000913' | ||
| 239 | +2.539352 Gversion b'lemma:.2' | ||
| 240 | +2.539352 Gversion b'-1:lemma:u00096' | ||
| 241 | +2.503419 O b'lemma:chip' | ||
| 242 | +2.502065 Gtype b'lemma:wild-type' | ||
| 243 | +2.487392 Technique b'+1:lemma:chip-exo' | ||
| 244 | +2.444920 Supp b'+1:lemma:_' | ||
| 245 | +2.434479 O b'-1:lemma:anaerobic' | ||
| 246 | +2.420671 Gtype b'+1:lemma:flagtag' | ||
| 247 | +2.395183 Anti b'lemma:anti-myc' | ||
| 248 | +2.385218 Strain b'+1:lemma:substr' | ||
| 249 | +2.376772 Technique b'-1:lemma:chip-exo' | ||
| 250 | +2.348313 pH b'lemma:.5' | ||
| 251 | +2.348313 pH b'-1:lemma:ph5' | ||
| 252 | +2.334952 O b'lemma:s' | ||
| 253 | +2.334641 OD b'+1:lemma:stationary' | ||
| 254 | +2.330137 O b'-1:lemma:lb' | ||
| 255 | +2.298914 Air b'lemma:anaerobically' | ||
| 256 | +2.282617 Supp b'+1:lemma:Deficient' | ||
| 257 | +2.277510 Med b'+1:lemma:minimal' | ||
| 258 | +2.269747 Gtype b'+1:lemma:ph5' | ||
| 259 | +2.257564 Gtype b'+1:lemma:pq' | ||
| 260 | +2.256911 Temp b'-1:lemma:\xcf\x8332' | ||
| 261 | +2.250901 O b'lemma:oxyr' | ||
| 262 | +2.238383 Gtype b'lemma:\xce\xb4ompr' | ||
| 263 | +2.232015 Gtype b'lemma:\xce\xb4soxs' | ||
| 264 | +2.222768 O b'lemma:or' | ||
| 265 | +2.220103 Supp b'-1:lemma:+' | ||
| 266 | +2.219418 Anti b'lemma:anti-rpos' | ||
| 267 | +2.194736 Supp b'+1:lemma:hour' | ||
| 268 | +2.194499 Temp b'-1:lemma:43' | ||
| 269 | +2.187158 O b'postag:VBG' | ||
| 270 | +2.177204 pH b'+1:postag:CD' | ||
| 271 | +2.177114 Supp b'-1:lemma:\xc2\xb5m' | ||
| 272 | +2.151093 Supp b'lemma:nacl' | ||
| 273 | +2.140203 O b'postag:DT' | ||
| 274 | +2.133179 O b'+1:lemma:pq' | ||
| 275 | +2.131891 O b'-1:lemma:stpa' | ||
| 276 | +2.130575 O b'lemma:affyexp' | ||
| 277 | +2.104996 Temp b'lemma:43' | ||
| 278 | +2.103942 O b'+1:lemma:o.d.' | ||
| 279 | +2.096381 O b'lemma:for' | ||
| 280 | +2.062239 O b'-1:lemma:l1' | ||
| 281 | +2.059181 O b'-1:lemma:\xc2\xb0c' | ||
| 282 | +2.056904 O b'lemma:chip-arca' | ||
| 283 | +2.042964 Gtype b'+1:lemma:_' | ||
| 284 | +2.037784 Air b'-1:lemma:-' | ||
| 285 | +2.033829 Supp b'lemma:20' | ||
| 286 | +2.033283 Med b'+1:lemma:2.0' | ||
| 287 | +2.030340 Air b'lemma:Anaerobic' | ||
| 288 | +2.025461 O b'lemma:culture' | ||
| 289 | +2.007866 O b'+1:postag:NNP' | ||
| 290 | +2.002694 Supp b'lemma:Leu' | ||
| 291 | +1.992014 O b'lemma:Lrp' | ||
| 292 | +1.990572 O b'+1:lemma:anti-fur' | ||
| 293 | +1.987491 O b'lemma:ompr' | ||
| 294 | +1.985226 Temp b'lemma:37' | ||
| 295 | +1.981458 Temp b'+1:lemma:\xc2\xb0c' | ||
| 296 | +1.954050 Technique b'-1:lemma:input' | ||
| 297 | +1.939671 Air b'-1:lemma:co2' | ||
| 298 | +1.933847 Gtype b'lemma:deltaseqa' | ||
| 299 | +1.933847 Gtype b'-1:lemma:old' | ||
| 300 | +1.924772 O b'+1:lemma:chip-seq' | ||
| 301 | +1.922580 O b'lemma:Fur' | ||
| 302 | +1.920444 Med b'-1:lemma:ml' | ||
| 303 | +1.908513 Gtype b'lemma:ptac' | ||
| 304 | +1.905616 Supp b'lemma:iptg' | ||
| 305 | +1.905043 Temp b'-1:lemma:37' | ||
| 306 | +1.897096 Med b'lemma:glucose' | ||
| 307 | +1.886045 O b'+1:lemma:mid-log' | ||
| 308 | +1.880944 Supp b'lemma:Adenine' | ||
| 309 | +1.871549 Med b'lemma:media' | ||
| 310 | +1.869057 Gtype b'lemma:pk4854' | ||
| 311 | +1.858978 Med b'lemma:L' | ||
| 312 | +1.858978 Med b'+1:lemma:broth' | ||
| 313 | +1.849089 O b'postag:SYM' | ||
| 314 | +1.839128 Supp b'lemma:0.2' | ||
| 315 | +1.838608 Gtype b'lemma:WT' | ||
| 316 | +1.834443 Gtype b'+1:lemma:aerobic' | ||
| 317 | +1.824894 Supp b'-1:lemma:with' | ||
| 318 | +1.808905 O b'+1:lemma:43' | ||
| 319 | +1.792132 O b'lemma:argr' | ||
| 320 | +1.790393 Substrain b'+1:lemma:phtpg' | ||
| 321 | +1.786085 Phase b'-1:lemma:mid-log' | ||
| 322 | +1.783387 Technique b'+1:lemma:rna-seq' | ||
| 323 | +1.774887 Med b'+1:lemma:g/l' | ||
| 324 | +1.773397 Gtype b'-1:lemma:nsrr' | ||
| 325 | +1.771235 Med b'+1:lemma:+' | ||
| 326 | +1.769899 Med b'postag:NNP' | ||
| 327 | +1.769535 Supp b'-1:lemma:mm' | ||
| 328 | +1.763683 Air b'-1:postag:CD' | ||
| 329 | +1.752886 OD b'-1:lemma:~' | ||
| 330 | +1.749965 O b'-1:lemma:0.3' | ||
| 331 | +1.744858 O b'lemma:at' | ||
| 332 | +1.740916 Supp b'lemma:methanol' | ||
| 333 | +1.740449 O b'lemma:purr' | ||
| 334 | +1.740138 Technique b'-1:lemma:_' | ||
| 335 | +1.740075 Med b'lemma:broth' | ||
| 336 | +1.740075 Med b'-1:lemma:L' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +0.000364 O b'+1:lemma:70' | ||
| 341 | +0.000332 O b'lemma:fresh' | ||
| 342 | +0.000294 O b'postag:VBZ' | ||
| 343 | +0.000275 OD b'+1:lemma::' | ||
| 344 | +0.000231 O b'-1:lemma:medium' | ||
| 345 | +0.000175 Supp b'-1:postag:NN' | ||
| 346 | +0.000167 Gtype b'-1:lemma:hn' | ||
| 347 | +0.000124 O b'lemma:coli' | ||
| 348 | +0.000118 OD b'+1:lemma:0.15' | ||
| 349 | +0.000060 Agit b'+1:postag:VBG' | ||
| 350 | +0.000056 Gversion b'-1:lemma:the' | ||
| 351 | +0.000042 O b'+1:lemma:harvest' | ||
| 352 | +0.000028 Med b'-1:lemma:2' | ||
| 353 | +0.000027 O b'lemma:w0002' | ||
| 354 | +0.000026 Anti b'-1:postag:NN' | ||
| 355 | +0.000024 O b'lemma:50' | ||
| 356 | +0.000023 O b'-1:lemma:with' | ||
| 357 | +0.000023 Supp b'lemma:hour' | ||
| 358 | +0.000022 Gversion b'-1:postag:DT' | ||
| 359 | +0.000013 Supp b'-1:lemma:10' | ||
| 360 | +0.000010 Substrain b'postag:NN' | ||
| 361 | +0.000009 Med b'lemma:-rrb-' | ||
| 362 | +0.000009 Gtype b'lemma:the' | ||
| 363 | +0.000009 O b'+1:lemma:um' | ||
| 364 | +0.000007 Med b'postag:-RRB-' | ||
| 365 | +0.000004 Gtype b'-1:lemma:cra' | ||
| 366 | +-0.000007 Med b'+1:postag:NNS' | ||
| 367 | +-0.000009 O b'+1:lemma:aerobically' | ||
| 368 | +-0.000017 O b'-1:lemma:until' | ||
| 369 | +-0.000027 O b'lemma:mg/ml' | ||
| 370 | +-0.000027 O b'-1:lemma:150' | ||
| 371 | +-0.000033 O b'+1:lemma:phase' | ||
| 372 | +-0.000034 OD b'postag:NNS' | ||
| 373 | +-0.000193 Gversion b'-1:postag:NN' | ||
| 374 | +-0.000221 O b'lemma:glucose' | ||
| 375 | +-0.000434 O b'lemma:purify' | ||
| 376 | +-0.000743 O b'+1:lemma:grow' | ||
| 377 | +-0.000794 O b'lemma:\xc2\xb0c' | ||
| 378 | +-0.000895 O b'+1:lemma:mg1655' | ||
| 379 | +-0.001880 O b'+1:lemma:n2' | ||
| 380 | +-0.003127 O b'-1:lemma:20' | ||
| 381 | +-0.003470 Gtype b'-1:postag:NN' | ||
| 382 | +-0.003555 Temp b'-1:lemma:\xc2\xb0c' | ||
| 383 | +-0.003698 OD b'+1:lemma:0.4' | ||
| 384 | +-0.003819 Gtype b'+1:postag:NNS' | ||
| 385 | +-0.003979 OD b'-1:postag:DT' | ||
| 386 | +-0.004093 Air b'-1:lemma:anaerobically' | ||
| 387 | +-0.005847 OD b'lemma:~' | ||
| 388 | +-0.007703 OD b'+1:lemma:-lrb-' | ||
| 389 | +-0.008413 OD b'+1:lemma:~' | ||
| 390 | +-0.010004 OD b'+1:lemma:and' | ||
| 391 | +-0.011677 Air b'+1:lemma:-lrb-' | ||
| 392 | +-0.015840 OD b'+1:postag:NNS' | ||
| 393 | +-0.022634 Air b'+1:postag:-LRB-' | ||
| 394 | +-0.022941 O b'lemma:m63' | ||
| 395 | +-0.024873 OD b'+1:postag:CD' | ||
| 396 | +-0.025582 O b'lemma:dpd' | ||
| 397 | +-0.030490 Supp b'+1:postag:VBN' | ||
| 398 | +-0.041555 Air b'-1:postag:CC' | ||
| 399 | +-0.047125 Supp b'+1:lemma:-rrb-' | ||
| 400 | +-0.048162 Phase b'-1:postag:NN' | ||
| 401 | +-0.048198 Air b'-1:lemma:70' | ||
| 402 | +-0.056727 O b'+1:lemma:rep1' | ||
| 403 | +-0.061184 O b'-1:lemma:-lrb-' | ||
| 404 | +-0.062123 O b'lemma:e.' | ||
| 405 | +-0.067649 O b'-1:lemma:mid-log' | ||
| 406 | +-0.079172 O b'-1:lemma:e.' | ||
| 407 | +-0.079999 Med b'-1:postag:IN' | ||
| 408 | +-0.081811 Air b'postag:CC' | ||
| 409 | +-0.082914 Supp b'+1:postag:-RRB-' | ||
| 410 | +-0.084681 OD b'postag:JJ' | ||
| 411 | +-0.087207 O b'-1:lemma:,' | ||
| 412 | +-0.087207 O b'-1:postag:,' | ||
| 413 | +-0.091606 O b'-1:lemma:from' | ||
| 414 | +-0.094097 Air b'postag:CD' | ||
| 415 | +-0.094790 O b'-1:lemma:o2' | ||
| 416 | +-0.098442 Gtype b'-1:postag:SYM' | ||
| 417 | +-0.101371 O b'lemma:30' | ||
| 418 | +-0.102952 O b'-1:lemma:30' | ||
| 419 | +-0.104458 Med b'-1:postag:NN' | ||
| 420 | +-0.104966 O b'-1:postag:VBN' | ||
| 421 | +-0.106487 OD b'+1:postag:-LRB-' | ||
| 422 | +-0.115379 O b'-1:lemma:0.1' | ||
| 423 | +-0.123943 Gtype b'postag:CD' | ||
| 424 | +-0.125483 O b'lemma:n2' | ||
| 425 | +-0.128182 O b'+1:lemma:5' | ||
| 426 | +-0.130795 Air b'-1:lemma:or' | ||
| 427 | +-0.131840 O b'lemma:co2' | ||
| 428 | +-0.131841 Supp b'lemma:and' | ||
| 429 | +-0.133586 O b'-1:lemma:g/l' | ||
| 430 | +-0.139512 Phase b'-1:lemma:at' | ||
| 431 | +-0.139664 O b'+1:lemma:300' | ||
| 432 | +-0.140814 Gtype b'-1:postag:CD' | ||
| 433 | +-0.148051 Temp b'postag:JJ' | ||
| 434 | +-0.148722 O b'-1:lemma:n2' | ||
| 435 | +-0.151800 Phase b'+1:postag:NN' | ||
| 436 | +-0.154097 O b'+1:lemma:shake' | ||
| 437 | +-0.157668 O b'-1:lemma:rifampicin' | ||
| 438 | +-0.160737 Supp b'postag:CC' | ||
| 439 | +-0.163938 Technique b'-1:lemma::' | ||
| 440 | +-0.192959 Med b'postag:CD' | ||
| 441 | +-0.196077 Gversion b'+1:postag:NN' | ||
| 442 | +-0.197347 Med b'+1:postag:IN' | ||
| 443 | +-0.198353 O b'-1:lemma:the' | ||
| 444 | +-0.210857 O b'+1:lemma:.' | ||
| 445 | +-0.210857 O b'+1:postag:.' | ||
| 446 | +-0.212158 O b'-1:postag:IN' | ||
| 447 | +-0.224946 Anti b'+1:postag:JJ' | ||
| 448 | +-0.229079 O b'lemma:lb' | ||
| 449 | +-0.229762 O b'-1:lemma:iptg' | ||
| 450 | +-0.230713 O b'-1:lemma:0.2' | ||
| 451 | +-0.230962 O b'lemma:k-12' | ||
| 452 | +-0.231370 O b'-1:lemma:of' | ||
| 453 | +-0.233847 O b'lemma:150' | ||
| 454 | +-0.233847 O b'+1:lemma:mg/ml' | ||
| 455 | +-0.235755 O b'+1:lemma:\xc2\xb0c' | ||
| 456 | +-0.239301 O b'+1:lemma:until' | ||
| 457 | +-0.241454 O b'+1:lemma:-rrb-' | ||
| 458 | +-0.291406 Med b'+1:postag:NN' | ||
| 459 | +-0.300667 O b'-1:lemma:1' | ||
| 460 | +-0.301872 O b'-1:postag:-LRB-' | ||
| 461 | +-0.304883 Phase b'-1:postag:JJ' | ||
| 462 | +-0.316741 O b'+1:lemma:arginine' | ||
| 463 | +-0.323570 O b'-1:lemma:cra' | ||
| 464 | +-0.324550 pH b'postag:NN' | ||
| 465 | +-0.337342 O b'lemma:\xe2\x88\x86' | ||
| 466 | +-0.341398 Anti b'+1:lemma:anti-fur' | ||
| 467 | +-0.348116 O b'+1:postag:IN' | ||
| 468 | +-0.392002 O b'+1:lemma:%' | ||
| 469 | +-0.397249 O b'lemma:phase' | ||
| 470 | +-0.397709 O b'lemma:anaerobic' | ||
| 471 | +-0.418316 O b'+1:postag:-RRB-' | ||
| 472 | +-0.425489 O b'lemma:dissolve' | ||
| 473 | +-0.429358 O b'+1:lemma:0.3' | ||
| 474 | +-0.434377 Supp b'-1:lemma:%' | ||
| 475 | +-0.452106 Temp b'+1:lemma:to' | ||
| 476 | +-0.452106 Temp b'+1:postag:TO' | ||
| 477 | +-0.459401 Phase b'postag:JJ' | ||
| 478 | +-0.481800 O b'+1:lemma:c' | ||
| 479 | +-0.510217 O b'lemma:\xce\xb4fur' | ||
| 480 | +-0.512490 O b'+1:lemma:fecl2' | ||
| 481 | +-0.514242 O b'-1:lemma:od600' | ||
| 482 | +-0.519690 O b'-1:lemma:ml' | ||
| 483 | +-0.534845 O b'lemma:media' | ||
| 484 | +-0.543546 O b'+1:postag:NNS' | ||
| 485 | +-0.552477 O b'lemma:20' | ||
| 486 | +-0.554174 O b'lemma:0.3' | ||
| 487 | +-0.554563 O b'postag:VBP' | ||
| 488 | +-0.558858 Supp b'+1:lemma:rifampicin' | ||
| 489 | +-0.584166 O b'-1:lemma:rpob' | ||
| 490 | +-0.595632 OD b'+1:lemma:of' | ||
| 491 | +-0.601347 OD b'lemma:-lrb-' | ||
| 492 | +-0.606330 O b'-1:lemma:~' | ||
| 493 | +-0.609828 Air b'-1:postag:JJ' | ||
| 494 | +-0.617562 O b'+1:lemma:cell' | ||
| 495 | +-0.628406 O b'-1:lemma:sample' | ||
| 496 | +-0.648795 O b'-1:lemma:co2' | ||
| 497 | +-0.650443 Supp b'+1:lemma:acetate' | ||
| 498 | +-0.661394 O b'lemma:anaerobically' | ||
| 499 | +-0.661739 Technique b'-1:postag::' | ||
| 500 | +-0.694556 Temp b'postag:NN' | ||
| 501 | +-0.699281 O b'+1:postag:VBG' | ||
| 502 | +-0.806053 O b'-1:lemma:grow' | ||
| 503 | +-0.835270 OD b'postag:-LRB-' | ||
| 504 | +-0.843540 O b'lemma:fecl2' | ||
| 505 | +-0.844938 O b'lemma:2h' | ||
| 506 | +-0.844938 O b'-1:lemma:additional' | ||
| 507 | +-0.860246 O b'lemma:0.2' | ||
| 508 | +-0.918603 O b'lemma:0.1' | ||
| 509 | +-0.919972 OD b'+1:postag:NN' | ||
| 510 | +-0.923722 O b'lemma:od600' | ||
| 511 | +-0.997956 O b'lemma:37' | ||
| 512 | +-1.049790 O b'+1:lemma:supplement' | ||
| 513 | +-1.054918 O b'-1:lemma:dissolve' | ||
| 514 | +-1.054918 O b'+1:lemma:methanol' | ||
| 515 | +-1.059657 O b'lemma:of' | ||
| 516 | +-1.079576 O b'+1:lemma:g/l' | ||
| 517 | +-1.102935 O b'-1:postag:VBG' | ||
| 518 | +-1.103027 O b'lemma:mid-log' | ||
| 519 | +-1.131823 O b'-1:lemma:37' | ||
| 520 | +-1.134618 O b'-1:postag::' | ||
| 521 | +-1.186603 O b'-1:lemma:ompr' | ||
| 522 | +-1.219384 O b'+1:lemma:hour' | ||
| 523 | +-1.220567 O b'+1:lemma:+' | ||
| 524 | +-1.256620 O b'+1:lemma:at' | ||
| 525 | +-1.304576 O b'+1:lemma:in' | ||
| 526 | +-1.348770 O b'lemma:rifampicin' | ||
| 527 | +-1.369043 O b'lemma:wt' | ||
| 528 | +-1.372537 Supp b'postag:JJ' | ||
| 529 | +-1.416841 O b'lemma:methanol' | ||
| 530 | +-1.441519 Air b'postag:NN' | ||
| 531 | +-1.482367 Air b'+1:postag:JJ' | ||
| 532 | +-1.497730 Anti b'postag:NNP' | ||
| 533 | +-1.498466 O b'-1:lemma:nsrr' | ||
| 534 | +-1.531484 O b'-1:lemma:IP' | ||
| 535 | +-2.013157 O b'+1:lemma:2' | ||
| 536 | +-2.053762 O b'-1:lemma:2' | ||
| 537 | +-2.424183 O b'+1:lemma:1' | ||
| 538 | +-3.562427 O b'-1:lemma::' | ||
| 539 | +-3.910745 O b'-1:lemma:_' | ||
| 540 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.20645497959678813, 'c2': 0.017572644849766363} | 4 | +best params:{'c1': 0.036962186699730476, 'c2': 0.0007197340103941715} |
| 5 | -best CV score:0.7977309817293199 | 5 | +best CV score:0.8049563498270011 |
| 6 | -model size: 0.06M | 6 | +model size: 0.08M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.784234402165812 | 8 | +Flat F1: 0.8014090034358301 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 1.000 0.405 0.577 37 | 11 | OD 1.000 0.405 0.577 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.800 0.842 0.821 57 | 14 | + Med 0.803 0.860 0.831 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | - Phase 1.000 0.895 0.944 19 | 18 | + Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.807 0.742 0.773 62 | 19 | + Air 0.920 0.742 0.821 62 |
| 20 | Anti 1.000 0.444 0.615 9 | 20 | Anti 1.000 0.444 0.615 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.866 0.792 0.828 106 | 22 | + Gtype 0.878 0.811 0.843 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.818 0.662 0.732 136 | 24 | + Supp 0.830 0.684 0.750 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.859 0.740 0.784 480 | 27 | +avg / total 0.880 0.754 0.801 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -Agit -> Agit 6.425591 | 31 | +Agit -> Agit 7.652221 |
| 32 | -OD -> OD 5.826527 | 32 | +Anti -> Anti 6.905048 |
| 33 | -Temp -> Temp 5.548786 | 33 | +OD -> OD 6.644654 |
| 34 | -Med -> Med 5.385181 | 34 | +Temp -> Temp 6.392371 |
| 35 | -Anti -> Anti 5.274493 | 35 | +Med -> Med 5.897259 |
| 36 | -Air -> Air 5.273813 | 36 | +Gtype -> Gtype 5.885016 |
| 37 | -Phase -> Phase 4.728944 | 37 | +Gversion -> Gversion 5.871628 |
| 38 | -Gtype -> Gtype 4.437920 | 38 | +Phase -> Phase 5.642567 |
| 39 | -Gversion -> Gversion 4.349816 | 39 | +Air -> Air 5.394223 |
| 40 | -O -> O 4.268725 | 40 | +O -> O 5.148014 |
| 41 | -Supp -> Supp 3.971396 | 41 | +Technique -> Technique 4.714602 |
| 42 | -Technique -> Technique 3.834387 | 42 | +Supp -> Supp 4.403242 |
| 43 | -pH -> pH 2.157022 | 43 | +pH -> pH 2.882239 |
| 44 | -O -> Supp 1.775419 | 44 | +Substrain -> Gtype 1.688067 |
| 45 | -Gtype -> Supp 1.744617 | 45 | +Gtype -> Supp 1.322012 |
| 46 | -Substrain -> Gtype 1.701513 | 46 | +O -> Supp 1.067852 |
| 47 | -Air -> O 1.650192 | 47 | +O -> Technique 0.764618 |
| 48 | -O -> Gtype 1.270693 | 48 | +O -> Gtype 0.648760 |
| 49 | -O -> Technique 1.253973 | 49 | +O -> Phase 0.314348 |
| 50 | -Technique -> Air 0.977999 | 50 | +O -> Anti 0.311802 |
| 51 | -O -> Anti 0.884095 | 51 | +Air -> O 0.261909 |
| 52 | -O -> Temp 0.762865 | 52 | +O -> Vess 0.047068 |
| 53 | -Med -> O 0.608226 | 53 | +Technique -> Air 0.046094 |
| 54 | -OD -> Phase 0.415201 | 54 | +Gtype -> pH 0.025742 |
| 55 | -Temp -> O 0.355964 | 55 | +O -> Gversion 0.014285 |
| 56 | -Gtype -> Air 0.349440 | 56 | +Strain -> O -0.000027 |
| 57 | -O -> Gversion 0.343072 | 57 | +OD -> Gtype -0.000088 |
| 58 | -Gtype -> pH 0.331974 | 58 | +Med -> O -0.009150 |
| 59 | -O -> Med 0.236453 | 59 | +pH -> O -0.021922 |
| 60 | -Phase -> O 0.133978 | 60 | +O -> Agit -0.054019 |
| 61 | -Supp -> O 0.132584 | 61 | +Phase -> Air -0.057034 |
| 62 | -O -> Strain 0.015869 | 62 | +Supp -> Gversion -0.109041 |
| 63 | -O -> Phase 0.000848 | 63 | +Phase -> pH -0.126867 |
| 64 | -O -> OD -0.004725 | 64 | +Phase -> Supp -0.149179 |
| 65 | -Technique -> OD -0.009324 | 65 | +Gtype -> Anti -0.177305 |
| 66 | -Technique -> O -0.010626 | 66 | +Gtype -> Phase -0.275685 |
| 67 | -Technique -> pH -0.028457 | 67 | +Supp -> Temp -0.301687 |
| 68 | -Supp -> Air -0.068848 | 68 | +O -> OD -0.348061 |
| 69 | -OD -> Air -0.084459 | 69 | +Air -> Phase -0.353316 |
| 70 | -Supp -> OD -0.119773 | 70 | +Gtype -> Med -0.401859 |
| 71 | -OD -> Med -0.182306 | 71 | +Gtype -> O -0.403896 |
| 72 | -Gtype -> Med -0.204270 | 72 | +Supp -> OD -0.422683 |
| 73 | -Technique -> Gtype -0.212005 | 73 | +OD -> Phase -0.428221 |
| 74 | -Gtype -> O -0.327673 | 74 | +Technique -> O -0.452620 |
| 75 | -Gtype -> Anti -0.356226 | 75 | +Technique -> pH -0.467777 |
| 76 | -O -> Air -0.606839 | 76 | +Supp -> Phase -0.485969 |
| 77 | -OD -> O -0.668006 | 77 | +Supp -> Gtype -0.488284 |
| 78 | -Agit -> O -0.720674 | 78 | +OD -> Temp -0.615341 |
| 79 | -Substrain -> O -0.778994 | 79 | +Supp -> Anti -0.639507 |
| 80 | -Supp -> Med -0.779854 | 80 | +Phase -> O -0.706192 |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | Top unlikely transitions: | 83 | Top unlikely transitions: |
| 84 | -Med -> Med 5.385181 | 84 | +Gtype -> pH 0.025742 |
| 85 | -Anti -> Anti 5.274493 | 85 | +O -> Gversion 0.014285 |
| 86 | -Air -> Air 5.273813 | 86 | +Strain -> O -0.000027 |
| 87 | -Phase -> Phase 4.728944 | 87 | +OD -> Gtype -0.000088 |
| 88 | -Gtype -> Gtype 4.437920 | 88 | +Med -> O -0.009150 |
| 89 | -Gversion -> Gversion 4.349816 | 89 | +pH -> O -0.021922 |
| 90 | -O -> O 4.268725 | 90 | +O -> Agit -0.054019 |
| 91 | -Supp -> Supp 3.971396 | 91 | +Phase -> Air -0.057034 |
| 92 | -Technique -> Technique 3.834387 | 92 | +Supp -> Gversion -0.109041 |
| 93 | -pH -> pH 2.157022 | 93 | +Phase -> pH -0.126867 |
| 94 | -O -> Supp 1.775419 | 94 | +Phase -> Supp -0.149179 |
| 95 | -Gtype -> Supp 1.744617 | 95 | +Gtype -> Anti -0.177305 |
| 96 | -Substrain -> Gtype 1.701513 | 96 | +Gtype -> Phase -0.275685 |
| 97 | -Air -> O 1.650192 | 97 | +Supp -> Temp -0.301687 |
| 98 | -O -> Gtype 1.270693 | 98 | +O -> OD -0.348061 |
| 99 | -O -> Technique 1.253973 | 99 | +Air -> Phase -0.353316 |
| 100 | -Technique -> Air 0.977999 | 100 | +Gtype -> Med -0.401859 |
| 101 | -O -> Anti 0.884095 | 101 | +Gtype -> O -0.403896 |
| 102 | -O -> Temp 0.762865 | 102 | +Supp -> OD -0.422683 |
| 103 | -Med -> O 0.608226 | 103 | +OD -> Phase -0.428221 |
| 104 | -OD -> Phase 0.415201 | 104 | +Technique -> O -0.452620 |
| 105 | -Temp -> O 0.355964 | 105 | +Technique -> pH -0.467777 |
| 106 | -Gtype -> Air 0.349440 | 106 | +Supp -> Phase -0.485969 |
| 107 | -O -> Gversion 0.343072 | 107 | +Supp -> Gtype -0.488284 |
| 108 | -Gtype -> pH 0.331974 | 108 | +OD -> Temp -0.615341 |
| 109 | -O -> Med 0.236453 | 109 | +Supp -> Anti -0.639507 |
| 110 | -Phase -> O 0.133978 | 110 | +Phase -> O -0.706192 |
| 111 | -Supp -> O 0.132584 | 111 | +Anti -> OD -0.844857 |
| 112 | -O -> Strain 0.015869 | 112 | +Phase -> Med -0.902223 |
| 113 | -O -> Phase 0.000848 | 113 | +O -> Med -0.935765 |
| 114 | -O -> OD -0.004725 | 114 | +OD -> Supp -0.978463 |
| 115 | -Technique -> OD -0.009324 | 115 | +Supp -> O -1.084719 |
| 116 | -Technique -> O -0.010626 | 116 | +Agit -> O -1.097714 |
| 117 | -Technique -> pH -0.028457 | 117 | +OD -> Air -1.126328 |
| 118 | -Supp -> Air -0.068848 | 118 | +Air -> Med -1.132598 |
| 119 | -OD -> Air -0.084459 | 119 | +Gtype -> OD -1.139180 |
| 120 | -Supp -> OD -0.119773 | 120 | +Supp -> Technique -1.250739 |
| 121 | -OD -> Med -0.182306 | 121 | +Technique -> Gtype -1.250976 |
| 122 | -Gtype -> Med -0.204270 | 122 | +Air -> OD -1.277975 |
| 123 | -Technique -> Gtype -0.212005 | 123 | +O -> Air -1.291423 |
| 124 | -Gtype -> O -0.327673 | 124 | +Air -> Supp -1.303586 |
| 125 | -Gtype -> Anti -0.356226 | 125 | +Supp -> Air -1.334582 |
| 126 | -O -> Air -0.606839 | 126 | +Temp -> Med -1.516161 |
| 127 | -OD -> O -0.668006 | 127 | +OD -> Med -1.658158 |
| 128 | -Agit -> O -0.720674 | 128 | +OD -> O -1.907052 |
| 129 | -Substrain -> O -0.778994 | 129 | +Technique -> OD -1.926078 |
| 130 | -Supp -> Med -0.779854 | 130 | +Substrain -> O -2.266894 |
| 131 | -Gtype -> OD -1.018491 | 131 | +Med -> Supp -2.671557 |
| 132 | -Med -> Supp -1.466475 | 132 | +Supp -> Med -2.793078 |
| 133 | -Phase -> OD -1.648011 | 133 | +Phase -> OD -4.004033 |
| 134 | 134 | ||
| 135 | 135 | ||
| 136 | Top positive: | 136 | Top positive: |
| 137 | -7.908476 O b'lemma:_' | 137 | +14.736732 Supp b'lemma:Iron' |
| 138 | -7.519798 Supp b'lemma:Iron' | 138 | +14.465018 Phase b'lemma:stationary' |
| 139 | -6.893122 Air b'lemma:anaerobic' | 139 | +11.931234 Air b'lemma:anaerobic' |
| 140 | -6.757207 O b'lemma:1' | 140 | +11.755072 O b'lemma:_' |
| 141 | -6.526738 Air b'lemma:aerobic' | 141 | +11.500878 Air b'lemma:aerobic' |
| 142 | -6.246963 Phase b'lemma:stationary' | 142 | +10.776302 O b'lemma:Custom' |
| 143 | -6.216490 Strain b'lemma:k-12' | 143 | +9.977404 Med b'lemma:MOPS' |
| 144 | -6.159501 Technique b'lemma:ChIP-exo' | 144 | +9.507368 O b'lemma:1' |
| 145 | -5.949001 Supp b'lemma:nitrate' | 145 | +9.383805 O b'lemma:rpob' |
| 146 | -5.557355 O b'lemma:rpob' | 146 | +9.319544 Technique b'lemma:ChIP-exo' |
| 147 | -5.556016 Phase b'lemma:mid-log' | 147 | +9.016782 Supp b'lemma:nitrate' |
| 148 | -5.526361 O b'lemma:2' | 148 | +8.629834 OD b'+1:lemma:stationary' |
| 149 | -5.249738 Technique b'lemma:chipseq' | 149 | +8.582738 Technique b'lemma:chipseq' |
| 150 | -5.235064 Air b'-1:lemma:ChIP-Seq' | 150 | +8.331021 Strain b'lemma:k-12' |
| 151 | -5.174037 O b'lemma:3' | 151 | +8.185729 Supp b'lemma:pq' |
| 152 | -5.050373 O b'postag:IN' | 152 | +8.108336 Air b'lemma:Aerobic' |
| 153 | -4.985897 Supp b'lemma:pq' | 153 | +8.081666 O b'-1:lemma:tag' |
| 154 | -4.921604 Substrain b'lemma:mg1655' | 154 | +7.987196 Gtype b'lemma:flag-tag' |
| 155 | -4.872348 Gtype b'lemma:\xce\xb4cra' | 155 | +7.987196 Gtype b'-1:lemma:c-terminal' |
| 156 | -4.847236 Gversion b'lemma:asm584v2' | 156 | +7.969290 O b'lemma:\xcf\x8332' |
| 157 | -4.762705 O b'-1:lemma:tag' | 157 | +7.864454 Air b'-1:lemma:ChIP-Seq' |
| 158 | -4.726906 OD b'lemma:od600' | 158 | +7.779218 Phase b'lemma:mid-log' |
| 159 | -4.660975 Gtype b'lemma:type' | 159 | +7.699581 Technique b'lemma:ChIP-Seq' |
| 160 | -4.628321 O b'lemma:Custom' | 160 | +7.693879 Gtype b'lemma:\xce\xb4cra' |
| 161 | -4.553702 O b'lemma:rep1' | 161 | +7.488490 O b'lemma:2' |
| 162 | -4.515219 Med b'lemma:MOPS' | 162 | +7.378100 Gversion b'lemma:asm584v2' |
| 163 | -4.507185 Gversion b'lemma:nc' | 163 | +7.205543 O b'lemma:3' |
| 164 | -4.464398 Air b'lemma:Aerobic' | 164 | +7.115380 O b'lemma:b' |
| 165 | -4.453084 Med b'lemma:LB' | 165 | +7.043756 Med b'lemma:LB' |
| 166 | -4.447532 Supp b'+1:lemma:\xc2\xb5m' | 166 | +6.950209 O b'lemma:for' |
| 167 | -4.437438 O b'-1:lemma:ChIP-exo' | 167 | +6.905886 O b'lemma:rep1' |
| 168 | -4.404385 O b'lemma:rep2' | 168 | +6.892700 O b'lemma:rep2' |
| 169 | -4.373164 Supp b'lemma:nh4cl' | 169 | +6.829683 O b'-1:lemma:ChIP-exo' |
| 170 | -4.365179 Gtype b'lemma:flag-tag' | 170 | +6.826037 Gtype b'lemma:arca8myc' |
| 171 | -4.365179 Gtype b'-1:lemma:c-terminal' | 171 | +6.814538 OD b'lemma:od450' |
| 172 | -4.354053 O b'postag::' | 172 | +6.663495 O b'postag::' |
| 173 | -4.297412 O b'lemma:\xcf\x8332' | 173 | +6.587073 Supp b'-1:lemma:Cra' |
| 174 | -4.284115 Gtype b'+1:lemma:type' | 174 | +6.555197 Supp b'+1:lemma:\xc2\xb5m' |
| 175 | -4.278996 O b'lemma:b' | 175 | +6.542596 Gtype b'lemma:delta-arca' |
| 176 | -4.258389 Gtype b'-1:lemma:\xe2\x88\x86' | 176 | +6.493295 O b'lemma:rep3' |
| 177 | -4.241615 Gtype b'lemma:wt' | 177 | +6.402654 Gtype b'lemma:fnr8myc' |
| 178 | -4.228158 Med b'lemma:lb' | 178 | +6.392757 Gtype b'lemma:type' |
| 179 | -4.218565 Gtype b'lemma:arca8myc' | 179 | +6.351940 O b'-1:lemma:0.3-0.35' |
| 180 | -4.218302 Technique b'lemma:ChIP-Seq' | 180 | +6.347501 Supp b'lemma:Fe' |
| 181 | -4.180599 Supp b'lemma:glucose' | 181 | +6.273476 O b'lemma:Cra' |
| 182 | -4.160405 O b'lemma:rep3' | 182 | +6.182315 Gtype b'lemma:delta-fnr' |
| 183 | -4.081991 O b'lemma:Cra' | 183 | +6.177522 Substrain b'lemma:mg1655' |
| 184 | -3.932540 O b'lemma:a' | 184 | +6.170615 Air b'lemma:Anaerobic' |
| 185 | -3.844330 Technique b'lemma:rna-seq' | 185 | +6.113701 O b'lemma:with' |
| 186 | -3.814781 Gtype b'lemma:delta-arca' | 186 | +5.936854 O b'-1:lemma:Aerobic' |
| 187 | -3.626994 Gtype b'lemma:fnr8myc' | 187 | +5.932249 Technique b'lemma:rnaseq' |
| 188 | -3.606800 Supp b'lemma:acetate' | 188 | +5.914672 O b'lemma:a' |
| 189 | -3.573033 Supp b'lemma:Fe' | 189 | +5.800356 Gtype b'-1:lemma:\xe2\x88\x86' |
| 190 | -3.567339 Technique b'lemma:chip-seq' | 190 | +5.783221 O b'lemma:chip' |
| 191 | -3.563430 Supp b'lemma:rifampicin' | 191 | +5.753480 Technique b'lemma:rna-seq' |
| 192 | -3.511453 OD b'lemma:od450' | 192 | +5.693444 Supp b'lemma:rifampicin' |
| 193 | -3.511078 O b'lemma:.' | 193 | +5.670336 Gtype b'lemma:\xce\xb4fur' |
| 194 | -3.511078 O b'postag:.' | 194 | +5.653053 Supp b'lemma:nh4cl' |
| 195 | -3.438725 Temp b'-1:lemma:sample' | 195 | +5.619758 Gtype b'lemma:nsrr' |
| 196 | -3.393434 Supp b'lemma:dpd' | 196 | +5.548861 Gversion b'lemma:nc' |
| 197 | -3.386786 Supp b'lemma:no3' | 197 | +5.511691 O b'-1:lemma:anaerobic' |
| 198 | -3.357689 Anti b'lemma:none' | 198 | +5.500216 Supp b'lemma:no3' |
| 199 | -3.339507 Med b'+1:lemma:0.4' | 199 | +5.430117 Anti b'lemma:none' |
| 200 | -3.299536 Gtype b'lemma:\xe2\x88\x86' | 200 | +5.416869 Gtype b'lemma:wt' |
| 201 | -3.288791 O b'+1:lemma:od600' | 201 | +5.398199 O b'+1:lemma:chip-seq' |
| 202 | -3.273758 Technique b'lemma:rnaseq' | 202 | +5.372251 Strain b'+1:lemma:substr' |
| 203 | -3.258770 Gtype b'lemma:delta-fnr' | 203 | +5.367205 Supp b'lemma:glucose' |
| 204 | -3.254592 O b'postag:VBN' | 204 | +5.288350 Supp b'lemma:arginine' |
| 205 | -3.228840 Supp b'lemma:fructose' | 205 | +5.224904 O b'+1:lemma:sparging' |
| 206 | -3.219194 Gtype b'lemma:\xce\xb4fur' | 206 | +5.195289 Gtype b'-1:lemma:rpob' |
| 207 | -3.208266 O b'lemma:CEL' | 207 | +5.120201 O b'+1:lemma:od600' |
| 208 | -3.206942 Gtype b'lemma:nsrr' | 208 | +5.119304 Anti b'lemma:seqa' |
| 209 | -3.177189 O b'-1:lemma:Aerobic' | 209 | +5.065756 O b'lemma:.' |
| 210 | -3.129133 Technique b'-1:lemma:IP' | 210 | +5.065756 O b'postag:.' |
| 211 | -3.128048 O b'-1:lemma:0.3-0.35' | 211 | +4.958683 O b'+1:postag:RB' |
| 212 | -3.112441 O b'-1:lemma:type' | 212 | +4.957995 Supp b'-1:lemma:+' |
| 213 | -3.098709 Gversion b'-1:lemma:nc' | 213 | +4.942087 Anti b'lemma:anti-rpos' |
| 214 | -3.051729 Vess b'lemma:flask' | 214 | +4.940685 O b'-1:lemma:type' |
| 215 | -3.051729 Vess b'-1:lemma:warm' | 215 | +4.936711 Temp b'-1:lemma:\xcf\x8332' |
| 216 | -3.008997 Supp b'+1:lemma:1' | 216 | +4.912250 Gtype b'+1:lemma:ph5' |
| 217 | -2.987213 pH b'lemma:ph5' | 217 | +4.895200 Med b'lemma:lb' |
| 218 | -2.987213 pH b'+1:lemma:.5' | 218 | +4.815819 Gtype b'-1:lemma:ptac' |
| 219 | -2.977412 Anti b'lemma:seqa' | 219 | +4.811978 O b'lemma:2-3' |
| 220 | -2.955347 Gtype b'lemma:wild-type' | 220 | +4.810818 O b'-1:lemma:glucose' |
| 221 | -2.951444 O b'lemma:-' | 221 | +4.792895 Supp b'lemma:Leu' |
| 222 | -2.937212 O b'+1:postag:RB' | 222 | +4.733669 O b'-1:lemma:0.3' |
| 223 | -2.916028 Supp b'lemma:arginine' | 223 | +4.703956 Supp b'+1:lemma:hour' |
| 224 | -2.840642 O b'-1:lemma:glucose' | 224 | +4.701672 Anti b'lemma:anti-myc' |
| 225 | -2.820501 Gtype b'+1:lemma:ph5' | 225 | +4.688605 Gtype b'+1:lemma:type' |
| 226 | -2.791333 Anti b'+1:lemma:antibody' | 226 | +4.685195 Technique b'+1:lemma:chip-exo' |
| 227 | -2.774879 Gversion b'lemma:chip-seq' | 227 | +4.663539 Gtype b'lemma:\xce\xb4ompr' |
| 228 | -2.771457 Anti b'lemma:anti-myc' | 228 | +4.630196 O b'lemma:at' |
| 229 | -2.765907 O b'lemma:chip' | 229 | +4.627640 OD b'lemma:od600' |
| 230 | -2.735612 Gtype b'+1:lemma:flagtag' | 230 | +4.627504 Gversion b'-1:lemma:nc' |
| 231 | -2.722421 Med b'lemma:m63' | 231 | +4.614675 O b'lemma:ompr' |
| 232 | -2.721104 O b'lemma:or' | 232 | +4.580496 O b'lemma:oxyr' |
| 233 | -2.699589 Temp b'lemma:\xc2\xb0c' | 233 | +4.534418 Gtype b'lemma:WT' |
| 234 | -2.681423 O b'lemma:with' | 234 | +4.489105 Air b'lemma:anerobically' |
| 235 | -2.669444 Med b'+1:lemma:minimal' | 235 | +4.453615 Med b'+1:lemma:0.4' |
| 236 | -2.666834 Gversion b'lemma:u00096' | 236 | +4.449035 Vess b'lemma:flask' |
| 237 | -2.666834 Gversion b'+1:lemma:.2' | 237 | +4.449035 Vess b'-1:lemma:warm' |
| 238 | -2.660974 Gtype b'+1:lemma:pq' | 238 | +4.421452 Technique b'lemma:chip-seq' |
| 239 | -2.654887 OD b'+1:lemma:stationary' | 239 | +4.387313 Gtype b'lemma:pk4854' |
| 240 | -2.644825 Gtype b'+1:lemma:with' | 240 | +4.372903 Technique b'-1:lemma:input' |
| 241 | -2.637258 Supp b'+1:lemma:2' | 241 | +4.333388 Supp b'+1:lemma:1' |
| 242 | -2.578615 Gtype b'lemma:\xce\xb4ompr' | 242 | +4.325171 pH b'lemma:ph5' |
| 243 | -2.569922 O b'-1:lemma:anaerobic' | 243 | +4.325171 pH b'+1:lemma:.5' |
| 244 | -2.559477 Temp b'+1:lemma:\xc2\xb0c' | 244 | +4.293581 O b'-1:lemma:dpd' |
| 245 | -2.558177 Supp b'-1:lemma:Cra' | 245 | +4.280002 Air b'lemma:anaerobically' |
| 246 | -2.555473 Gversion b'lemma:.2' | 246 | +4.273687 Supp b'lemma:Adenine' |
| 247 | -2.555473 Gversion b'-1:lemma:u00096' | 247 | +4.255972 Temp b'-1:lemma:37' |
| 248 | -2.519787 O b'postag:CC' | 248 | +4.227681 Supp b'lemma:acetate' |
| 249 | -2.515611 Gtype b'-1:lemma:ptac' | 249 | +4.213628 O b'lemma:chip-arca' |
| 250 | -2.474668 Technique b'-1:lemma:chip-exo' | 250 | +4.212847 Technique b'-1:lemma:IP' |
| 251 | -2.465084 Gversion b'lemma:000913' | 251 | +4.207389 Med b'+1:lemma:contain' |
| 252 | -2.459269 O b'+1:lemma:pq' | 252 | +4.195958 O b'lemma:s' |
| 253 | -2.454369 Strain b'+1:lemma:substr' | 253 | +4.194941 Supp b'lemma:fructose' |
| 254 | -2.453079 O b'postag:DT' | 254 | +4.188294 O b'postag:IN' |
| 255 | -2.447446 Temp b'-1:lemma:\xcf\x8332' | 255 | +4.148814 O b'postag:VBN' |
| 256 | -2.434523 Technique b'+1:lemma:chip-exo' | 256 | +4.113823 O b'lemma:CEL' |
| 257 | -2.415981 Supp b'lemma:nacl' | 257 | +4.077959 O b'lemma:argr' |
| 258 | -2.400381 O b'+1:postag:NNP' | 258 | +4.042281 Supp b'lemma:dpd' |
| 259 | -2.395375 O b'lemma:s' | 259 | +3.997796 Gversion b'lemma:chip-seq' |
| 260 | -2.378114 pH b'lemma:.5' | 260 | +3.996937 Med b'-1:lemma:complete' |
| 261 | -2.378114 pH b'-1:lemma:ph5' | 261 | +3.979910 O b'lemma:or' |
| 262 | -2.360956 Med b'+1:lemma:2.0' | 262 | +3.977533 Supp b'lemma:iptg' |
| 263 | -2.360197 Temp b'-1:lemma:43' | 263 | +3.966804 Gtype b'+1:lemma:pq' |
| 264 | -2.354343 O b'-1:lemma:lb' | 264 | +3.958145 Gtype b'lemma:\xe2\x88\x86' |
| 265 | -2.333302 Gtype b'-1:lemma:rpob' | 265 | +3.955065 Med b'+1:lemma:2.0' |
| 266 | -2.331044 Supp b'+1:lemma:_' | 266 | +3.950822 Gtype b'lemma:wild-type' |
| 267 | -2.265756 O b'-1:lemma:l1' | 267 | +3.949211 O b'lemma:soxs' |
| 268 | -2.256561 Supp b'-1:lemma:\xc2\xb5m' | 268 | +3.949211 O b'lemma:soxr' |
| 269 | -2.253390 Air b'-1:lemma:-' | 269 | +3.941119 Med b'lemma:m63' |
| 270 | -2.244110 O b'lemma:oxyr' | 270 | +3.931242 Substrain b'+1:lemma:phtpg' |
| 271 | -2.231965 Air b'lemma:anaerobically' | 271 | +3.927386 O b'+1:lemma:o.d.' |
| 272 | -2.211436 Anti b'lemma:anti-rpos' | 272 | +3.916508 Gtype b'lemma:deltaseqa' |
| 273 | -2.204750 O b'-1:lemma:stpa' | 273 | +3.916508 Gtype b'-1:lemma:old' |
| 274 | -2.194353 OD b'-1:lemma:~' | 274 | +3.914220 Gtype b'lemma:\xce\xb4soxs' |
| 275 | -2.189113 Gtype b'lemma:\xce\xb4soxs' | 275 | +3.907586 O b'lemma:purr' |
| 276 | -2.183419 Air b'postag:RB' | 276 | +3.892156 Gtype b'-1:lemma:phtpg' |
| 277 | -2.170778 Supp b'-1:lemma:+' | 277 | +3.890329 Gtype b'lemma:ptac' |
| 278 | -2.151725 Temp b'lemma:43' | 278 | +3.850631 Gversion b'lemma:000913' |
| 279 | -2.127054 Temp b'lemma:37' | 279 | +3.838063 O b'+1:lemma:pq' |
| 280 | -2.124907 Supp b'lemma:20' | 280 | +3.814358 Med b'-1:lemma:ml' |
| 281 | -2.115142 O b'+1:lemma:o.d.' | 281 | +3.787653 Gtype b'lemma:dfnr' |
| 282 | -2.111143 Supp b'lemma:Leu' | 282 | +3.771572 Temp b'-1:lemma:sample' |
| 283 | -2.107663 O b'lemma:Lrp' | 283 | +3.744540 Supp b'+1:lemma:2' |
| 284 | -2.107472 Temp b'-1:lemma:37' | 284 | +3.742952 Supp b'+1:lemma:and' |
| 285 | -2.094728 Gtype b'lemma:ptac' | 285 | +3.728733 Gversion b'lemma:u00096' |
| 286 | -2.073944 O b'+1:lemma:chip-seq' | 286 | +3.728733 Gversion b'+1:lemma:.2' |
| 287 | -2.062388 Supp b'lemma:iptg' | 287 | +3.711200 O b'-1:lemma:lb' |
| 288 | -2.042062 O b'lemma:affyexp' | 288 | +3.705509 O b'lemma:-' |
| 289 | -2.040790 Med b'lemma:media' | 289 | +3.691676 Gtype b'+1:lemma:flagtag' |
| 290 | -2.031837 O b'lemma:culture' | 290 | +3.674793 Gversion b'lemma:.2' |
| 291 | -2.024586 O b'postag:VBG' | 291 | +3.674793 Gversion b'-1:lemma:u00096' |
| 292 | -2.010374 Vess b'-1:postag:VBN' | 292 | +3.653013 Supp b'lemma:nacl' |
| 293 | -2.009201 Gtype b'lemma:pk4854' | 293 | +3.643673 Phase b'lemma:exponentially' |
| 294 | -2.002974 Med b'lemma:glucose' | 294 | +3.585772 Technique b'+1:lemma:rna-seq' |
| 295 | -1.998019 Gtype b'+1:lemma:_' | 295 | +3.575806 O b'postag:DT' |
| 296 | -1.980119 Supp b'+1:lemma:hour' | 296 | +3.570513 OD b'-1:lemma:about' |
| 297 | -1.975173 O b'lemma:chip-arca' | 297 | +3.563376 Phase b'+1:lemma:for' |
| 298 | -1.959423 Supp b'-1:lemma:with' | 298 | +3.528626 O b'-1:lemma:\xc2\xb0c' |
| 299 | -1.922869 Technique b'-1:lemma:input' | 299 | +3.519471 Supp b'-1:lemma:\xc2\xb5m' |
| 300 | -1.921526 O b'lemma:ompr' | 300 | +3.512500 Temp b'lemma:\xc2\xb0c' |
| 301 | -1.910950 Med b'lemma:broth' | 301 | +3.492555 Med b'lemma:L' |
| 302 | -1.910950 Med b'-1:lemma:L' | 302 | +3.492555 Med b'+1:lemma:broth' |
| 303 | -1.910014 Gtype b'lemma:deltaseqa' | 303 | +3.475007 Phase b'-1:lemma:until' |
| 304 | -1.910014 Gtype b'-1:lemma:old' | 304 | +3.468148 Anti b'+1:lemma:antibody' |
| 305 | -1.905010 O b'-1:lemma:0.3' | 305 | +3.443352 Gtype b'+1:lemma:knock-out' |
| 306 | -1.901042 OD b'lemma:0.3' | 306 | +3.428406 O b'lemma:pt7' |
| 307 | -1.900964 Med b'lemma:L' | 307 | +3.424672 O b'lemma:delta' |
| 308 | -1.900964 Med b'+1:lemma:broth' | 308 | +3.402918 Temp b'-1:lemma:43' |
| 309 | -1.899018 Supp b'+1:lemma:Deficient' | 309 | +3.373540 OD b'lemma:0.3' |
| 310 | -1.893912 Air b'lemma:Anaerobic' | 310 | +3.365163 O b'+1:postag:VBP' |
| 311 | -1.893451 Med b'-1:lemma:ml' | 311 | +3.352185 Gtype b'lemma:\xce\xb4soxr' |
| 312 | -1.870173 O b'lemma:Fur' | 312 | +3.346484 O b'-1:lemma:min' |
| 313 | -1.848155 pH b'+1:postag:CD' | 313 | +3.328874 O b'lemma:affyexp' |
| 314 | -1.823256 O b'+1:lemma:coli' | 314 | +3.326810 Gtype b'-1:lemma:ptrc' |
| 315 | -1.818674 Gtype b'-1:lemma:nsrr' | 315 | +3.318952 Med b'-1:lemma:LB' |
| 316 | -1.808290 Substrain b'+1:lemma:phtpg' | 316 | +3.316906 Gtype b'lemma:\xce\xb4oxyr' |
| 317 | -1.805456 Phase b'-1:lemma:mid-log' | 317 | +3.293421 O b'lemma:Fur' |
| 318 | -1.797810 Med b'-1:lemma:glucose' | 318 | +3.287509 Gtype b'lemma:soxs-8myc' |
| 319 | -1.796653 Supp b'lemma:methanol' | 319 | +3.287509 Gtype b'lemma:soxr-8myc' |
| 320 | -1.792416 O b'-1:lemma:\xc2\xb0c' | 320 | +3.284962 O b'-1:lemma:one' |
| 321 | -1.781537 Supp b'lemma:Adenine' | 321 | +3.281320 Supp b'+1:lemma:_' |
| 322 | -1.779649 Air b'-1:lemma:grow' | 322 | +3.258770 OD b'lemma:0.35' |
| 323 | -1.777565 Technique b'+1:lemma:rna-seq' | 323 | +3.241590 Med b'+1:lemma:minimal' |
| 324 | -1.776039 OD b'lemma:phase' | 324 | +3.241148 Temp b'lemma:37' |
| 325 | -1.775438 O b'lemma:condition' | 325 | +3.196351 O b'+1:postag:NNP' |
| 326 | -1.763711 Air b'-1:lemma:phase' | 326 | +3.162352 Supp b'lemma:leucine' |
| 327 | -1.762988 Gversion b'lemma:_' | 327 | +3.132572 Supp b'lemma:methanol' |
| 328 | -1.759448 O b'-1:lemma:dpd' | 328 | +3.118836 Supp b'+1:lemma:iptg' |
| 329 | -1.736984 O b'lemma:genotype/variation' | 329 | +3.117955 O b'lemma:Lrp' |
| 330 | -1.716841 O b'lemma:argr' | 330 | +3.114567 O b'-1:lemma:l1' |
| 331 | -1.709815 O b'postag:VBD' | 331 | +3.104623 Technique b'-1:lemma:chip-exo' |
| 332 | -1.687639 Air b'-1:lemma:co2' | 332 | +3.095609 Temp b'lemma:43' |
| 333 | -1.686138 Gversion b'postag:CD' | 333 | +3.070949 Gtype b'lemma:purr-8myc' |
| 334 | -1.676377 Phase b'-1:lemma:until' | 334 | +3.038562 O b'lemma:chip-fnr' |
| 335 | -1.672693 Gtype b'lemma:WT' | 335 | +3.038302 Temp b'-1:lemma:degree' |
| 336 | -1.671406 Phase b'+1:lemma:for' | 336 | +2.983839 O b'+1:lemma:0.2' |
| 337 | 337 | ||
| 338 | 338 | ||
| 339 | Top negative: | 339 | Top negative: |
| 340 | -0.015104 Vess b'+1:postag:IN' | 340 | +-0.001880 O b'-1:lemma:20' |
| 341 | -0.014949 OD b'-1:lemma:to' | 341 | +-0.002666 O b'lemma:k-12' |
| 342 | -0.014949 OD b'-1:postag:TO' | 342 | +-0.002968 O b'+1:lemma:min' |
| 343 | -0.013481 O b'+1:lemma:nitrate' | 343 | +-0.003084 Med b'lemma:-lrb-' |
| 344 | -0.012911 O b'-1:lemma:mm' | 344 | +-0.003121 Med b'postag:-LRB-' |
| 345 | -0.012853 O b'-1:lemma:m63' | 345 | +-0.004653 O b'-1:lemma:iptg' |
| 346 | -0.012845 Phase b'+1:lemma:aerobically' | 346 | +-0.004849 O b'-1:lemma:at' |
| 347 | -0.012531 Phase b'+1:postag:RB' | 347 | +-0.005085 O b'+1:postag:CD' |
| 348 | -0.010531 OD b'+1:lemma:coli' | 348 | +-0.007587 O b'-1:lemma:cra' |
| 349 | -0.010197 Air b'postag:-LRB-' | 349 | +-0.010544 O b'+1:lemma:95' |
| 350 | -0.007967 O b'+1:lemma:mm' | 350 | +-0.011683 O b'lemma:m63' |
| 351 | -0.007668 Air b'-1:postag:-LRB-' | 351 | +-0.012501 O b'lemma:medium' |
| 352 | -0.007530 O b'+1:lemma:wt' | 352 | +-0.012898 OD b'-1:postag:DT' |
| 353 | -0.007412 O b'+1:lemma:for' | 353 | +-0.013161 O b'+1:lemma:25' |
| 354 | -0.006443 Med b'-1:lemma:g/l' | 354 | +-0.013797 Gtype b'postag::' |
| 355 | -0.005977 Temp b'-1:postag:NN' | 355 | +-0.013997 Agit b'-1:postag:NN' |
| 356 | -0.005028 OD b'-1:lemma:growth' | 356 | +-0.014419 Anti b'+1:postag:JJ' |
| 357 | -0.004138 Technique b'-1:postag:NN' | 357 | +-0.015431 Supp b'-1:postag:DT' |
| 358 | -0.003008 O b'lemma:fresh' | 358 | +-0.019000 O b'-1:lemma:30' |
| 359 | -0.002709 O b'+1:postag:SYM' | 359 | +-0.019225 O b'+1:lemma:shake' |
| 360 | -0.002549 Supp b'+1:lemma:deficient' | 360 | +-0.020830 OD b'-1:lemma:a' |
| 361 | -0.002275 Technique b'+1:postag:-RRB-' | 361 | +-0.025221 Air b'-1:postag:NNP' |
| 362 | -0.002219 O b'+1:lemma:_' | 362 | +-0.025592 Anti b'postag:NN' |
| 363 | -0.001749 O b'lemma:dpd' | 363 | +-0.028086 Gtype b'-1:lemma:,' |
| 364 | -0.001500 Temp b'postag:VB' | 364 | +-0.028086 Gtype b'-1:postag:,' |
| 365 | -0.001375 Gtype b'lemma:cra-8myc-tagged' | 365 | +-0.031137 Gtype b'-1:postag:JJ' |
| 366 | -0.001375 Gtype b'lemma:fur-8myc' | 366 | +-0.040614 O b'-1:lemma:mm' |
| 367 | -0.000712 O b'-1:postag:VBZ' | 367 | +-0.041284 O b'+1:lemma:-rrb-' |
| 368 | -0.000676 O b'+1:lemma:minute' | 368 | +-0.042740 O b'lemma:cell' |
| 369 | -0.000589 Temp b'+1:postag:NNS' | 369 | +-0.043305 Air b'-1:postag:CC' |
| 370 | -0.000468 Supp b'lemma:um' | 370 | +-0.043495 O b'+1:lemma:300' |
| 371 | -0.000451 Gtype b'lemma:Combined' | 371 | +-0.051111 Med b'-1:postag:NN' |
| 372 | -0.000451 Gtype b'+1:lemma:input' | 372 | +-0.055942 Phase b'+1:postag:NN' |
| 373 | -0.000346 O b'postag:VBZ' | 373 | +-0.059007 O b'-1:lemma:-lrb-' |
| 374 | -0.000331 Supp b'-1:lemma:250' | 374 | +-0.059506 O b'-1:lemma:until' |
| 375 | -0.000251 O b'lemma:-80' | 375 | +-0.060593 O b'lemma:purify' |
| 376 | -0.000219 Temp b'-1:postag:NNS' | 376 | +-0.062294 Med b'-1:lemma:m63' |
| 377 | -0.000204 O b'+1:lemma:total' | 377 | +-0.063502 Med b'+1:postag:CC' |
| 378 | -0.000185 Air b'+1:postag::' | 378 | +-0.064443 Med b'+1:postag:NNS' |
| 379 | -0.000154 O b'-1:lemma:to' | 379 | +-0.065194 O b'lemma:30' |
| 380 | -0.000154 O b'-1:postag:TO' | 380 | +-0.067235 O b'+1:lemma:antibody' |
| 381 | -0.000148 Gversion b'-1:postag::' | 381 | +-0.068873 O b'+1:lemma:arginine' |
| 382 | -0.000078 O b'+1:lemma:dpd' | 382 | +-0.074074 Anti b'+1:lemma:anti-fur' |
| 383 | -0.000049 Gtype b'lemma:inducible' | 383 | +-0.074512 Supp b'-1:lemma:the' |
| 384 | -0.000049 Gtype b'-1:lemma:carrying' | 384 | +-0.075699 Agit b'postag:NN' |
| 385 | -0.000049 Gtype b'+1:lemma:ptrc' | 385 | +-0.076342 OD b'postag:JJ' |
| 386 | -0.000030 OD b'+1:lemma:0.35' | 386 | +-0.081383 O b'lemma:mg/ml' |
| 387 | -0.000027 Anti b'+1:lemma:tag' | 387 | +-0.081383 O b'-1:lemma:150' |
| 388 | -0.000010 OD b'lemma:mg1655' | 388 | +-0.083167 O b'+1:lemma:mm' |
| 389 | -0.000009 OD b'-1:lemma:k-12' | 389 | +-0.084553 OD b'+1:postag:CD' |
| 390 | --0.000003 Gtype b'+1:postag:NNS' | 390 | +-0.088239 O b'+1:lemma:5' |
| 391 | --0.000145 O b'lemma:m63' | 391 | +-0.092963 O b'lemma:o2' |
| 392 | --0.000217 O b'-1:lemma:um' | 392 | +-0.102549 O b'+1:lemma:0.4' |
| 393 | --0.000217 O b'+1:lemma:paraquat' | 393 | +-0.103355 Air b'-1:lemma:95' |
| 394 | --0.000321 Temp b'-1:lemma:\xc2\xb0c' | 394 | +-0.106456 Supp b'-1:postag:NNP' |
| 395 | --0.000324 Agit b'postag:NN' | 395 | +-0.108567 O b'-1:lemma:of' |
| 396 | --0.000658 Gtype b'+1:lemma:\xe2\x88\x86' | 396 | +-0.115119 Gversion b'-1:postag:NN' |
| 397 | --0.000729 Air b'-1:lemma:,' | 397 | +-0.120133 O b'lemma:aerobically' |
| 398 | --0.000729 Air b'-1:postag:,' | 398 | +-0.120470 Gtype b'-1:postag:NN' |
| 399 | --0.001373 Gtype b'postag:CD' | 399 | +-0.120546 O b'+1:lemma:or' |
| 400 | --0.001602 Supp b'+1:lemma:-rrb-' | 400 | +-0.120740 O b'+1:lemma:culture' |
| 401 | --0.001692 Supp b'+1:postag:-RRB-' | 401 | +-0.127755 Supp b'-1:postag:NN' |
| 402 | --0.002077 O b'lemma:lb' | 402 | +-0.129556 Supp b'-1:lemma:-' |
| 403 | --0.002511 O b'-1:lemma:,' | 403 | +-0.133917 O b'-1:postag:-LRB-' |
| 404 | --0.002511 O b'-1:postag:,' | 404 | +-0.134138 Supp b'-1:postag:VBG' |
| 405 | --0.003565 OD b'+1:postag:-LRB-' | 405 | +-0.138473 O b'-1:lemma:fresh' |
| 406 | --0.004827 O b'-1:lemma:g/l' | 406 | +-0.140719 O b'-1:postag:IN' |
| 407 | --0.007036 Air b'+1:lemma:25' | 407 | +-0.142122 O b'lemma:mg1655' |
| 408 | --0.007105 O b'+1:lemma:rep1' | 408 | +-0.143719 OD b'+1:lemma:0.4' |
| 409 | --0.007327 Supp b'lemma:mm' | 409 | +-0.143799 O b'lemma:grow' |
| 410 | --0.008864 O b'+1:lemma:c' | 410 | +-0.148543 O b'-1:lemma:with' |
| 411 | --0.009788 Air b'-1:lemma:aerobically' | 411 | +-0.150394 Air b'-1:lemma:or' |
| 412 | --0.011509 O b'-1:postag:VBN' | 412 | +-0.152699 Air b'postag:CD' |
| 413 | --0.011813 O b'+1:lemma:shake' | 413 | +-0.159127 O b'-1:lemma:o2' |
| 414 | --0.014323 Air b'lemma:25' | 414 | +-0.164529 Anti b'-1:postag:NN' |
| 415 | --0.017276 Air b'+1:lemma:-lrb-' | 415 | +-0.167167 Supp b'+1:postag:IN' |
| 416 | --0.017627 O b'+1:lemma:aerobically' | 416 | +-0.171276 Technique b'-1:postag::' |
| 417 | --0.018161 O b'lemma:e.' | 417 | +-0.171821 O b'-1:lemma:n2' |
| 418 | --0.020084 Med b'-1:postag:CD' | 418 | +-0.176160 Gtype b'+1:lemma:-' |
| 419 | --0.021369 O b'lemma:glucose' | 419 | +-0.194927 O b'-1:lemma:IP' |
| 420 | --0.023787 Gtype b'-1:postag:NN' | 420 | +-0.195160 O b'lemma:n2' |
| 421 | --0.034266 OD b'postag:JJ' | 421 | +-0.198789 Phase b'lemma:pahse' |
| 422 | --0.035836 Med b'postag:CD' | 422 | +-0.201995 O b'lemma:e.' |
| 423 | --0.043749 O b'-1:lemma:o2' | 423 | +-0.205638 Supp b'lemma:and' |
| 424 | --0.049597 Gtype b'-1:postag:DT' | 424 | +-0.207287 O b'-1:lemma:from' |
| 425 | --0.050879 O b'+1:lemma:300' | 425 | +-0.208015 O b'lemma:minimal' |
| 426 | --0.051292 Phase b'-1:postag:JJ' | 426 | +-0.210261 Technique b'-1:lemma::' |
| 427 | --0.052811 Phase b'-1:postag:NN' | 427 | +-0.212191 Med b'+1:postag:IN' |
| 428 | --0.057812 O b'-1:lemma:rifampicin' | 428 | +-0.217993 O b'lemma:co2' |
| 429 | --0.064533 O b'-1:lemma:e.' | 429 | +-0.228390 O b'-1:lemma:e.' |
| 430 | --0.067797 O b'+1:lemma:until' | 430 | +-0.232055 O b'-1:lemma:delta' |
| 431 | --0.076803 O b'lemma:150' | 431 | +-0.235967 O b'lemma:anaerobic' |
| 432 | --0.076803 O b'+1:lemma:mg/ml' | 432 | +-0.240188 Gtype b'+1:lemma:\xe2\x88\x86' |
| 433 | --0.080714 O b'+1:lemma:5' | 433 | +-0.252858 Air b'+1:postag:NN' |
| 434 | --0.090840 Gversion b'+1:postag:NN' | 434 | +-0.253575 O b'lemma:\xce\xb4fur' |
| 435 | --0.099773 OD b'+1:postag:CD' | 435 | +-0.255267 O b'+1:lemma:until' |
| 436 | --0.103778 O b'-1:lemma:-lrb-' | 436 | +-0.278004 OD b'+1:lemma:and' |
| 437 | --0.104888 Anti b'+1:postag:JJ' | 437 | +-0.279260 Strain b'postag:NN' |
| 438 | --0.112142 Technique b'-1:lemma::' | 438 | +-0.290950 Phase b'+1:lemma:pahse' |
| 439 | --0.119753 Air b'postag:CC' | 439 | +-0.303132 O b'+1:postag:-RRB-' |
| 440 | --0.127293 O b'-1:lemma:0.1' | 440 | +-0.303655 O b'-1:lemma:0.1' |
| 441 | --0.127394 O b'+1:lemma:.' | 441 | +-0.306332 O b'lemma:lb' |
| 442 | --0.127394 O b'+1:postag:.' | 442 | +-0.321340 Strain b'+1:postag:NN' |
| 443 | --0.129048 Air b'-1:lemma:or' | 443 | +-0.322047 O b'-1:lemma:um' |
| 444 | --0.129819 O b'-1:lemma:from' | 444 | +-0.322047 O b'+1:lemma:paraquat' |
| 445 | --0.138472 O b'-1:postag:IN' | 445 | +-0.322249 O b'-1:postag:VBN' |
| 446 | --0.146711 Air b'-1:postag:CC' | 446 | +-0.349326 O b'lemma:\xc2\xb0c' |
| 447 | --0.147481 O b'+1:lemma:-rrb-' | 447 | +-0.361160 O b'-1:lemma:od600' |
| 448 | --0.155126 O b'+1:lemma:antibody' | 448 | +-0.367243 OD b'+1:postag:CC' |
| 449 | --0.155172 O b'lemma:co2' | 449 | +-0.370391 O b'+1:postag:IN' |
| 450 | --0.168963 Gtype b'-1:postag:CD' | 450 | +-0.371202 O b'+1:lemma:cell' |
| 451 | --0.169956 O b'+1:postag:NNS' | 451 | +-0.376309 Gtype b'postag:CD' |
| 452 | --0.174119 Supp b'postag:CC' | 452 | +-0.379638 O b'lemma:glucose' |
| 453 | --0.179294 O b'-1:lemma:1' | 453 | +-0.391908 Med b'postag:CD' |
| 454 | --0.191426 O b'+1:lemma:arginine' | 454 | +-0.423766 Phase b'-1:lemma:at' |
| 455 | --0.196031 O b'-1:lemma:cra' | 455 | +-0.429012 O b'-1:lemma:rifampicin' |
| 456 | --0.199976 O b'lemma:anaerobic' | 456 | +-0.467242 O b'lemma:phase' |
| 457 | --0.204578 O b'lemma:30' | 457 | +-0.467472 O b'+1:lemma:phase' |
| 458 | --0.224096 Med b'-1:postag:NN' | 458 | +-0.475017 O b'postag:RB' |
| 459 | --0.230003 Phase b'+1:postag:NN' | 459 | +-0.477051 Temp b'postag:NN' |
| 460 | --0.236956 O b'+1:lemma:%' | 460 | +-0.488107 O b'+1:lemma:.' |
| 461 | --0.241481 O b'-1:lemma:30' | 461 | +-0.488107 O b'+1:postag:.' |
| 462 | --0.264234 Air b'postag:CD' | 462 | +-0.490917 pH b'postag:NN' |
| 463 | --0.270046 O b'lemma:\xce\xb4fur' | 463 | +-0.497406 Supp b'+1:lemma:rifampicin' |
| 464 | --0.280726 O b'-1:lemma:ml' | 464 | +-0.508914 OD b'+1:postag:NN' |
| 465 | --0.288044 O b'-1:lemma:of' | 465 | +-0.512657 O b'+1:lemma:minimal' |
| 466 | --0.297076 Med b'+1:postag:NN' | 466 | +-0.519173 O b'-1:lemma:0.2' |
| 467 | --0.299805 Med b'+1:postag:IN' | 467 | +-0.530979 O b'lemma:od600' |
| 468 | --0.302610 Supp b'+1:lemma:rifampicin' | 468 | +-0.533526 O b'-1:lemma:ml' |
| 469 | --0.306596 O b'-1:lemma:~' | 469 | +-0.543008 O b'-1:lemma:grow' |
| 470 | --0.307778 O b'-1:postag:-LRB-' | 470 | +-0.578806 O b'+1:lemma:\xc2\xb0c' |
| 471 | --0.310654 O b'lemma:phase' | 471 | +-0.598896 O b'+1:lemma:%' |
| 472 | --0.311969 pH b'postag:NN' | 472 | +-0.630328 Anti b'postag:NNP' |
| 473 | --0.315543 O b'+1:lemma:0.3' | 473 | +-0.634341 O b'+1:postag:NNS' |
| 474 | --0.318646 O b'postag:VBP' | 474 | +-0.638897 O b'lemma:anaerobically' |
| 475 | --0.335513 OD b'+1:postag:NN' | 475 | +-0.646464 Med b'+1:postag:NN' |
| 476 | --0.365484 Temp b'postag:JJ' | 476 | +-0.654278 O b'lemma:dissolve' |
| 477 | --0.402954 O b'lemma:dissolve' | 477 | +-0.657625 O b'+1:lemma:0.3' |
| 478 | --0.424513 O b'lemma:20' | 478 | +-0.663655 O b'-1:lemma:~' |
| 479 | --0.429534 O b'+1:postag:IN' | 479 | +-0.667007 O b'+1:lemma:c' |
| 480 | --0.437134 O b'-1:lemma:grow' | 480 | +-0.671527 OD b'lemma:-lrb-' |
| 481 | --0.457631 Phase b'-1:lemma:at' | 481 | +-0.695001 Supp b'+1:lemma:acetate' |
| 482 | --0.461721 Temp b'+1:lemma:to' | 482 | +-0.719232 Supp b'+1:postag:VBN' |
| 483 | --0.461721 Temp b'+1:postag:TO' | 483 | +-0.736651 OD b'postag:-LRB-' |
| 484 | --0.486817 Supp b'-1:lemma:%' | 484 | +-0.748690 O b'lemma:150' |
| 485 | --0.495015 O b'lemma:0.3' | 485 | +-0.748690 O b'+1:lemma:mg/ml' |
| 486 | --0.505567 Temp b'postag:NN' | 486 | +-0.748744 O b'-1:lemma:mid-log' |
| 487 | --0.513730 O b'lemma:od600' | 487 | +-0.757228 O b'lemma:of' |
| 488 | --0.526067 O b'+1:postag:-RRB-' | 488 | +-0.765669 O b'lemma:0.3' |
| 489 | --0.537886 O b'+1:postag:VBG' | 489 | +-0.775445 Phase b'-1:postag:NN' |
| 490 | --0.541924 O b'-1:lemma:od600' | 490 | +-0.785838 O b'+1:lemma:_' |
| 491 | --0.549617 O b'-1:lemma:rpob' | 491 | +-0.836798 O b'+1:lemma:+' |
| 492 | --0.561323 O b'-1:lemma:0.2' | 492 | +-0.838706 O b'lemma:media' |
| 493 | --0.568252 OD b'lemma:-lrb-' | 493 | +-0.850667 Temp b'+1:lemma:to' |
| 494 | --0.568961 Technique b'-1:postag::' | 494 | +-0.850667 Temp b'+1:postag:TO' |
| 495 | --0.587228 O b'-1:lemma:sample' | 495 | +-0.853884 O b'lemma:20' |
| 496 | --0.604535 O b'+1:lemma:fecl2' | 496 | +-0.858396 O b'+1:lemma:fecl2' |
| 497 | --0.605395 O b'-1:lemma:37' | 497 | +-0.888463 O b'-1:lemma:37' |
| 498 | --0.633419 O b'lemma:anaerobically' | 498 | +-0.889531 O b'+1:postag:VBG' |
| 499 | --0.640315 Air b'-1:postag:JJ' | 499 | +-0.894578 Supp b'postag:CC' |
| 500 | --0.646518 O b'lemma:\xe2\x88\x86' | 500 | +-0.921012 O b'-1:lemma:sample' |
| 501 | --0.700705 O b'lemma:fecl2' | 501 | +-0.924636 O b'-1:lemma:rpob' |
| 502 | --0.713765 O b'-1:postag::' | 502 | +-0.961486 O b'-1:lemma:dissolve' |
| 503 | --0.750660 O b'lemma:media' | 503 | +-0.961486 O b'+1:lemma:methanol' |
| 504 | --0.798765 O b'+1:lemma:supplement' | 504 | +-0.968540 O b'+1:lemma:g/l' |
| 505 | --0.840866 O b'-1:postag:VBG' | 505 | +-0.990992 O b'-1:lemma:co2' |
| 506 | --0.867716 O b'lemma:0.2' | 506 | +-1.021480 Air b'postag:NN' |
| 507 | --0.905677 O b'+1:lemma:cell' | 507 | +-1.067624 O b'postag:VBP' |
| 508 | --0.915154 O b'lemma:2h' | 508 | +-1.081123 O b'lemma:37' |
| 509 | --0.915154 O b'-1:lemma:additional' | 509 | +-1.089911 O b'lemma:0.2' |
| 510 | --0.930586 Supp b'+1:lemma:acetate' | 510 | +-1.170615 O b'-1:postag:VBG' |
| 511 | --0.930611 O b'lemma:37' | 511 | +-1.208578 Med b'-1:postag:IN' |
| 512 | --0.940854 O b'+1:lemma:g/l' | 512 | +-1.244210 O b'lemma:dpd' |
| 513 | --0.942447 O b'-1:lemma:co2' | 513 | +-1.275258 Gversion b'+1:postag:NN' |
| 514 | --0.944499 O b'lemma:of' | 514 | +-1.294393 O b'+1:lemma:in' |
| 515 | --0.951108 O b'-1:lemma:dissolve' | 515 | +-1.403685 O b'-1:postag::' |
| 516 | --0.951108 O b'+1:lemma:methanol' | 516 | +-1.414702 O b'-1:lemma:nsrr' |
| 517 | --0.962496 O b'+1:lemma:hour' | 517 | +-1.415899 O b'+1:lemma:supplement' |
| 518 | --0.976720 Phase b'postag:JJ' | 518 | +-1.418323 O b'lemma:fecl2' |
| 519 | --0.983487 O b'lemma:0.1' | 519 | +-1.446252 O b'lemma:2h' |
| 520 | --1.035888 O b'-1:lemma:ompr' | 520 | +-1.446252 O b'-1:lemma:additional' |
| 521 | --1.064088 O b'+1:lemma:at' | 521 | +-1.614291 Air b'-1:postag:JJ' |
| 522 | --1.115638 OD b'postag:-LRB-' | 522 | +-1.668024 Phase b'-1:postag:JJ' |
| 523 | --1.121251 O b'lemma:wt' | 523 | +-1.735170 O b'+1:lemma:at' |
| 524 | --1.195033 O b'lemma:mid-log' | 524 | +-1.739701 Air b'+1:postag:JJ' |
| 525 | --1.218852 O b'+1:lemma:+' | 525 | +-1.761325 O b'lemma:0.1' |
| 526 | --1.237063 O b'-1:lemma:IP' | 526 | +-1.911105 O b'lemma:wt' |
| 527 | --1.311143 O b'-1:lemma:nsrr' | 527 | +-1.984681 O b'-1:lemma:ompr' |
| 528 | --1.325930 Anti b'postag:NNP' | 528 | +-1.985595 O b'lemma:mid-log' |
| 529 | --1.428005 O b'lemma:rifampicin' | 529 | +-2.042857 Supp b'postag:JJ' |
| 530 | --1.465722 Air b'+1:postag:JJ' | 530 | +-2.130120 Supp b'-1:lemma:%' |
| 531 | --1.474845 Supp b'postag:JJ' | 531 | +-2.172496 O b'+1:lemma:hour' |
| 532 | --1.503128 O b'lemma:methanol' | 532 | +-2.277278 O b'lemma:rifampicin' |
| 533 | --1.517666 O b'+1:lemma:in' | 533 | +-2.459658 O b'-1:lemma:2' |
| 534 | --1.685015 Air b'postag:NN' | 534 | +-2.504857 O b'lemma:methanol' |
| 535 | --2.153686 O b'+1:lemma:2' | 535 | +-2.599172 O b'+1:lemma:2' |
| 536 | --2.261742 O b'-1:lemma:2' | 536 | +-3.335267 O b'+1:lemma:1' |
| 537 | --2.412156 O b'+1:lemma:1' | 537 | +-4.632191 O b'-1:lemma:_' |
| 538 | --4.073767 O b'-1:lemma::' | 538 | +-4.728214 Phase b'postag:JJ' |
| 539 | --4.265465 O b'-1:lemma:_' | 539 | +-5.510009 O b'-1:lemma::' |
| 540 | 540 | ... | ... |
CRF/reports/report_Run2_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.12822074735920433, 'c2': 0.028255623123597452} | ||
| 5 | +best CV score:0.8237380408677073 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.8193415910917898 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.789 0.405 0.536 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 1.000 0.909 0.952 22 | ||
| 14 | + Med 0.898 0.930 0.914 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 0.810 0.758 0.783 62 | ||
| 20 | + Anti 1.000 0.667 0.800 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.927 0.840 0.881 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.883 0.669 0.762 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.889 0.771 0.819 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.565409 | ||
| 32 | +OD -> OD 6.231734 | ||
| 33 | +Temp -> Temp 5.402921 | ||
| 34 | +Med -> Med 5.359382 | ||
| 35 | +Anti -> Anti 5.104770 | ||
| 36 | +O -> O 4.742896 | ||
| 37 | +Air -> Air 4.719911 | ||
| 38 | +Supp -> Supp 4.287498 | ||
| 39 | +Phase -> Phase 4.241142 | ||
| 40 | +Gtype -> Gtype 4.089050 | ||
| 41 | +Gversion -> Gversion 4.032429 | ||
| 42 | +Technique -> Technique 3.850995 | ||
| 43 | +pH -> pH 1.963947 | ||
| 44 | +O -> Supp 1.603550 | ||
| 45 | +Air -> O 1.398467 | ||
| 46 | +O -> Technique 1.240044 | ||
| 47 | +Substrain -> Gtype 1.119453 | ||
| 48 | +O -> Gtype 0.875238 | ||
| 49 | +Gtype -> Supp 0.858295 | ||
| 50 | +O -> Temp 0.596269 | ||
| 51 | +Phase -> O 0.564175 | ||
| 52 | +O -> Anti 0.517085 | ||
| 53 | +Med -> O 0.386943 | ||
| 54 | +Supp -> O 0.353705 | ||
| 55 | +O -> Gversion 0.348096 | ||
| 56 | +Temp -> O 0.185839 | ||
| 57 | +OD -> Phase 0.161408 | ||
| 58 | +Technique -> Air 0.128857 | ||
| 59 | +O -> pH 0.118475 | ||
| 60 | +O -> Strain 0.096954 | ||
| 61 | +O -> Med 0.052178 | ||
| 62 | +Anti -> O 0.009171 | ||
| 63 | +O -> Phase 0.000467 | ||
| 64 | +O -> OD -0.005897 | ||
| 65 | +Phase -> Technique -0.012764 | ||
| 66 | +Supp -> Temp -0.013683 | ||
| 67 | +Technique -> Gtype -0.021909 | ||
| 68 | +Supp -> OD -0.033848 | ||
| 69 | +Phase -> Air -0.069264 | ||
| 70 | +Supp -> Air -0.090838 | ||
| 71 | +Gtype -> Technique -0.113048 | ||
| 72 | +Gtype -> Gversion -0.157086 | ||
| 73 | +Gtype -> Phase -0.202957 | ||
| 74 | +Technique -> pH -0.208178 | ||
| 75 | +Gtype -> O -0.210311 | ||
| 76 | +OD -> Gtype -0.231184 | ||
| 77 | +Air -> Supp -0.257429 | ||
| 78 | +Technique -> OD -0.285302 | ||
| 79 | +Technique -> O -0.341935 | ||
| 80 | +Supp -> Gversion -0.342115 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Air -> O 1.398467 | ||
| 85 | +O -> Technique 1.240044 | ||
| 86 | +Substrain -> Gtype 1.119453 | ||
| 87 | +O -> Gtype 0.875238 | ||
| 88 | +Gtype -> Supp 0.858295 | ||
| 89 | +O -> Temp 0.596269 | ||
| 90 | +Phase -> O 0.564175 | ||
| 91 | +O -> Anti 0.517085 | ||
| 92 | +Med -> O 0.386943 | ||
| 93 | +Supp -> O 0.353705 | ||
| 94 | +O -> Gversion 0.348096 | ||
| 95 | +Temp -> O 0.185839 | ||
| 96 | +OD -> Phase 0.161408 | ||
| 97 | +Technique -> Air 0.128857 | ||
| 98 | +O -> pH 0.118475 | ||
| 99 | +O -> Strain 0.096954 | ||
| 100 | +O -> Med 0.052178 | ||
| 101 | +Anti -> O 0.009171 | ||
| 102 | +O -> Phase 0.000467 | ||
| 103 | +O -> OD -0.005897 | ||
| 104 | +Phase -> Technique -0.012764 | ||
| 105 | +Supp -> Temp -0.013683 | ||
| 106 | +Technique -> Gtype -0.021909 | ||
| 107 | +Supp -> OD -0.033848 | ||
| 108 | +Phase -> Air -0.069264 | ||
| 109 | +Supp -> Air -0.090838 | ||
| 110 | +Gtype -> Technique -0.113048 | ||
| 111 | +Gtype -> Gversion -0.157086 | ||
| 112 | +Gtype -> Phase -0.202957 | ||
| 113 | +Technique -> pH -0.208178 | ||
| 114 | +Gtype -> O -0.210311 | ||
| 115 | +OD -> Gtype -0.231184 | ||
| 116 | +Air -> Supp -0.257429 | ||
| 117 | +Technique -> OD -0.285302 | ||
| 118 | +Technique -> O -0.341935 | ||
| 119 | +Supp -> Gversion -0.342115 | ||
| 120 | +Gtype -> Med -0.344684 | ||
| 121 | +Supp -> Gtype -0.358479 | ||
| 122 | +Air -> Temp -0.449831 | ||
| 123 | +OD -> O -0.500326 | ||
| 124 | +Gtype -> Anti -0.517041 | ||
| 125 | +Agit -> O -0.543034 | ||
| 126 | +O -> Air -0.641599 | ||
| 127 | +Phase -> OD -0.787199 | ||
| 128 | +OD -> Air -0.831209 | ||
| 129 | +Supp -> Technique -0.892537 | ||
| 130 | +Supp -> Med -0.914717 | ||
| 131 | +Gtype -> OD -0.923871 | ||
| 132 | +Substrain -> O -0.971193 | ||
| 133 | +Med -> Supp -1.319670 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +6.042889 O b'lemma:1' | ||
| 138 | +5.378037 O b'lemma:2' | ||
| 139 | +4.814602 O b'word[:2]:re' | ||
| 140 | +4.742997 O b'lemma:3' | ||
| 141 | +4.604194 Air b'word[:2]:Ae' | ||
| 142 | +4.582747 O b'-1:lemma:tag' | ||
| 143 | +4.358279 Technique b'word[:2]:Ch' | ||
| 144 | +4.152239 Air b'lemma:anaerobic' | ||
| 145 | +4.066499 O b'lemma:a' | ||
| 146 | +4.065258 O b'lemma:_' | ||
| 147 | +4.065258 O b'word[:1]:_' | ||
| 148 | +4.064588 O b'postag:IN' | ||
| 149 | +3.716431 O b'postag::' | ||
| 150 | +3.606992 Gtype b'word[:2]:Fl' | ||
| 151 | +3.524792 Phase b'lemma:mid-log' | ||
| 152 | +3.467339 Gtype b'lemma:arca8myc' | ||
| 153 | +3.410721 O b'lemma:with' | ||
| 154 | +3.368507 Phase b'lemma:stationary' | ||
| 155 | +3.359342 Gtype b'word[:1]:\xce\x94' | ||
| 156 | +3.271176 O b'+1:lemma:od600' | ||
| 157 | +3.232433 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 158 | +3.205920 Med b'word[:2]:LB' | ||
| 159 | +3.145263 O b'lemma:.' | ||
| 160 | +3.145263 O b'postag:.' | ||
| 161 | +3.128776 Supp b'+1:lemma:\xc2\xb5m' | ||
| 162 | +3.096928 O b'-1:lemma:Aerobic' | ||
| 163 | +3.056649 O b'word[:1]:S' | ||
| 164 | +3.049272 O b'word[:2]:ge' | ||
| 165 | +2.996386 O b'postag:VBN' | ||
| 166 | +2.992231 O b'word[:2]:Rp' | ||
| 167 | +2.901111 Supp b'lemma:Iron' | ||
| 168 | +2.901111 Supp b'word[:2]:Ir' | ||
| 169 | +2.888425 Supp b'lemma:arginine' | ||
| 170 | +2.815369 Supp b'word[:1]:I' | ||
| 171 | +2.784841 Supp b'lemma:nitrate' | ||
| 172 | +2.784841 Supp b'word[:2]:ni' | ||
| 173 | +2.775372 Med b'word[:1]:M' | ||
| 174 | +2.760314 Air b'-1:lemma:ChIP-Seq' | ||
| 175 | +2.752516 Supp b'-1:lemma:Cra' | ||
| 176 | +2.738888 O b'lemma:delta' | ||
| 177 | +2.690700 Anti b'+1:lemma:antibody' | ||
| 178 | +2.680938 Technique b'word[:2]:RN' | ||
| 179 | +2.640855 O b'-1:lemma:0.3-0.35' | ||
| 180 | +2.630147 O b'word[:2]:Cu' | ||
| 181 | +2.628890 O b'word[:2]:Cr' | ||
| 182 | +2.628035 Supp b'+1:lemma:1' | ||
| 183 | +2.611639 Air b'word[:2]:An' | ||
| 184 | +2.563252 Supp b'+1:lemma:2' | ||
| 185 | +2.537665 Gtype b'word[:2]:cr' | ||
| 186 | +2.505368 Air b'word[:1]:A' | ||
| 187 | +2.488531 O b'word[:1]:G' | ||
| 188 | +2.467070 O b'+1:postag:RB' | ||
| 189 | +2.451239 O b'lemma:argr' | ||
| 190 | +2.433577 Gtype b'lemma:flag-tag' | ||
| 191 | +2.433577 Gtype b'-1:lemma:c-terminal' | ||
| 192 | +2.391502 O b'word[:1]:B' | ||
| 193 | +2.376551 O b'+1:lemma:pq' | ||
| 194 | +2.369827 O b'lemma:-' | ||
| 195 | +2.356850 O b'lemma:A' | ||
| 196 | +2.330843 O b'postag:CC' | ||
| 197 | +2.301360 Med b'word[:1]:L' | ||
| 198 | +2.282908 Gtype b'word[:1]:d' | ||
| 199 | +2.281497 O b'+1:lemma:mid-log' | ||
| 200 | +2.281275 O b'+1:lemma:o.d.' | ||
| 201 | +2.274064 O b'-1:lemma:glucose' | ||
| 202 | +2.272588 Gversion b'-1:lemma:nc' | ||
| 203 | +2.261134 Supp b'lemma:pq' | ||
| 204 | +2.261134 Supp b'word[:2]:PQ' | ||
| 205 | +2.254663 O b'word[:2]:ch' | ||
| 206 | +2.242812 O b'lemma:at' | ||
| 207 | +2.229584 O b'-1:lemma:lb' | ||
| 208 | +2.216086 Gtype b'-1:lemma:_' | ||
| 209 | +2.208080 O b'-1:lemma:anaerobic' | ||
| 210 | +2.203650 Gtype b'lemma:type' | ||
| 211 | +2.203650 Gtype b'word[:2]:ty' | ||
| 212 | +2.188456 Med b'lemma:MOPS' | ||
| 213 | +2.188456 Med b'word[:2]:MO' | ||
| 214 | +2.154914 OD b'word[:1]:O' | ||
| 215 | +2.150169 Supp b'-1:lemma:+' | ||
| 216 | +2.148437 Supp b'+1:lemma:hour' | ||
| 217 | +2.145965 O b'lemma:purr' | ||
| 218 | +2.130562 Strain b'lemma:k-12' | ||
| 219 | +2.130562 Strain b'word[:2]:K-' | ||
| 220 | +2.128273 Gversion b'lemma:chip-seq' | ||
| 221 | +2.124653 Gversion b'lemma:asm584v2' | ||
| 222 | +2.124653 Gversion b'word[:2]:AS' | ||
| 223 | +2.114191 Supp b'word[:2]:mg' | ||
| 224 | +2.079751 Gtype b'lemma:wt' | ||
| 225 | +2.079618 Strain b'word[:1]:K' | ||
| 226 | +2.074663 O b'lemma:rpob' | ||
| 227 | +2.068933 OD b'+1:lemma:stationary' | ||
| 228 | +2.065663 Gversion b'word[:2]:00' | ||
| 229 | +2.061985 O b'lemma:b' | ||
| 230 | +2.056038 Temp b'-1:lemma:sample' | ||
| 231 | +2.053114 Phase b'word[:2]:st' | ||
| 232 | +2.043604 O b'postag:DT' | ||
| 233 | +2.037822 O b'word[:2]:Lr' | ||
| 234 | +2.022730 Gtype b'lemma:nsrr' | ||
| 235 | +2.022730 Gtype b'word[:2]:Ns' | ||
| 236 | +2.021608 Temp b'-1:lemma:\xcf\x8332' | ||
| 237 | +2.002870 Gversion b'lemma:nc' | ||
| 238 | +2.002870 Gversion b'word[:2]:NC' | ||
| 239 | +1.998257 Supp b'lemma:fructose' | ||
| 240 | +1.989806 OD b'word[:2]:OD' | ||
| 241 | +1.984624 O b'word[:2]:fo' | ||
| 242 | +1.983155 Med b'+1:lemma:0.4' | ||
| 243 | +1.978931 Air b'postag:RB' | ||
| 244 | +1.970422 O b'lemma:\xcf\x8332' | ||
| 245 | +1.970422 O b'word[:1]:\xcf\x83' | ||
| 246 | +1.970422 O b'word[:2]:\xcf\x833' | ||
| 247 | +1.968991 Substrain b'lemma:mg1655' | ||
| 248 | +1.968991 Substrain b'word[:2]:MG' | ||
| 249 | +1.949696 O b'lemma:Custom' | ||
| 250 | +1.942668 pH b'lemma:ph5' | ||
| 251 | +1.942668 pH b'+1:lemma:.5' | ||
| 252 | +1.942559 O b'-1:lemma:type' | ||
| 253 | +1.939421 Gtype b'word[:1]:W' | ||
| 254 | +1.927720 O b'lemma:0.4' | ||
| 255 | +1.918769 Air b'lemma:aerobic' | ||
| 256 | +1.911973 Supp b'lemma:rifampicin' | ||
| 257 | +1.899971 Supp b'word[:2]:ri' | ||
| 258 | +1.892762 O b'-1:lemma:stpa' | ||
| 259 | +1.891369 Supp b'word[:2]:gl' | ||
| 260 | +1.883496 Vess b'lemma:flask' | ||
| 261 | +1.883496 Vess b'-1:lemma:warm' | ||
| 262 | +1.883496 Vess b'word[:2]:fl' | ||
| 263 | +1.866473 Gtype b'+1:lemma:type' | ||
| 264 | +1.858048 Gtype b'hGreek' | ||
| 265 | +1.846301 Substrain b'word[:1]:M' | ||
| 266 | +1.843289 Gtype b'+1:lemma:flagtag' | ||
| 267 | +1.839432 Supp b'-1:lemma:with' | ||
| 268 | +1.808519 Anti b'word[:2]:an' | ||
| 269 | +1.796182 Supp b'word[:2]:Fe' | ||
| 270 | +1.770222 Air b'-1:lemma:co2' | ||
| 271 | +1.757419 O b'+1:postag:NNP' | ||
| 272 | +1.756260 Supp b'lemma:acetate' | ||
| 273 | +1.756125 Air b'-1:lemma:phase' | ||
| 274 | +1.744786 Supp b'word[:1]:2' | ||
| 275 | +1.742628 Temp b'lemma:43' | ||
| 276 | +1.742628 Temp b'word[:2]:43' | ||
| 277 | +1.737898 Technique b'lemma:ChIP-exo' | ||
| 278 | +1.733503 Gtype b'lemma:fnr8myc' | ||
| 279 | +1.733503 Gtype b'word[:2]:Fn' | ||
| 280 | +1.717668 O b'+1:lemma:chip-seq' | ||
| 281 | +1.717668 O b'word[:2]:In' | ||
| 282 | +1.711566 Supp b'+1:lemma:_' | ||
| 283 | +1.706442 O b'+1:lemma:anerobically' | ||
| 284 | +1.702869 Temp b'-1:lemma:43' | ||
| 285 | +1.697874 O b'word[:1]:E' | ||
| 286 | +1.679257 O b'+1:lemma:nacl' | ||
| 287 | +1.676751 Temp b'word[:1]:3' | ||
| 288 | +1.674101 Strain b'+1:lemma:substr' | ||
| 289 | +1.668117 Gtype b'+1:lemma::' | ||
| 290 | +1.662871 Gtype b'-1:lemma:rpob' | ||
| 291 | +1.659272 Phase b'+1:lemma:for' | ||
| 292 | +1.658740 Med b'+1:lemma:-lrb-' | ||
| 293 | +1.653292 Supp b'lemma:nacl' | ||
| 294 | +1.645217 Med b'+1:postag:-LRB-' | ||
| 295 | +1.644387 Phase b'-1:lemma:until' | ||
| 296 | +1.633923 Supp b'word[:2]:0.' | ||
| 297 | +1.631245 O b'word[:2]:Om' | ||
| 298 | +1.629217 O b'-1:lemma:\xc2\xb0c' | ||
| 299 | +1.609945 O b'lemma:antibody' | ||
| 300 | +1.602620 O b'word[:2]:Pu' | ||
| 301 | +1.596753 Supp b'word[:2]:ac' | ||
| 302 | +1.589715 Gtype b'word[:2]:so' | ||
| 303 | +1.579402 Supp b'+1:postag:CC' | ||
| 304 | +1.576836 Med b'+1:lemma:supplement' | ||
| 305 | +1.575982 Gtype b'-1:postag:VBG' | ||
| 306 | +1.572483 Supp b'lemma:nh4cl' | ||
| 307 | +1.572483 Supp b'word[:2]:NH' | ||
| 308 | +1.571642 Gtype b'lemma:\xe2\x88\x86' | ||
| 309 | +1.571642 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 310 | +1.541168 Air b'+1:lemma:at' | ||
| 311 | +1.539300 O b'-1:lemma:dpd' | ||
| 312 | +1.538899 Technique b'lemma:rnaseq' | ||
| 313 | +1.524271 pH b'+1:postag:CD' | ||
| 314 | +1.521425 O b'lemma:oxyr' | ||
| 315 | +1.521425 O b'word[:2]:Ox' | ||
| 316 | +1.520812 Supp b'word[:1]:\xc2\xb5' | ||
| 317 | +1.518532 pH b'lemma:.5' | ||
| 318 | +1.518532 pH b'-1:lemma:ph5' | ||
| 319 | +1.518532 pH b'word[:2]:.5' | ||
| 320 | +1.516502 O b'+1:postag::' | ||
| 321 | +1.513634 Temp b'+1:lemma:\xc2\xb0c' | ||
| 322 | +1.512169 Supp b'+1:lemma:and' | ||
| 323 | +1.512098 Gtype b'-1:lemma:ptac' | ||
| 324 | +1.512061 O b'word[:1]:C' | ||
| 325 | +1.511111 Supp b'word[:1]:1' | ||
| 326 | +1.508414 O b'postag:VBG' | ||
| 327 | +1.489242 Med b'postag:NNP' | ||
| 328 | +1.476047 O b'-1:lemma:0.3' | ||
| 329 | +1.472256 Air b'word[:2]:an' | ||
| 330 | +1.471863 Air b'-1:lemma:_' | ||
| 331 | +1.463959 O b'word[:1]:c' | ||
| 332 | +1.460284 O b'lemma:for' | ||
| 333 | +1.457885 Gtype b'+1:lemma:with' | ||
| 334 | +1.450344 Gversion b'word[:2]:Ch' | ||
| 335 | +1.449241 O b'word[:2]:or' | ||
| 336 | +1.445626 Gversion b'lemma:.2' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.086688 Air b'symb' | ||
| 341 | +-0.087278 O b'+1:postag:JJ' | ||
| 342 | +-0.088979 O b'lemma:0.1' | ||
| 343 | +-0.090012 Gtype b'lemma:,' | ||
| 344 | +-0.090012 Gtype b'postag:,' | ||
| 345 | +-0.090760 O b'word[:1]:M' | ||
| 346 | +-0.091539 O b'-1:lemma:g/l' | ||
| 347 | +-0.092936 Gtype b'word[:1]:,' | ||
| 348 | +-0.093150 O b'word[:1]:p' | ||
| 349 | +-0.094182 Phase b'-1:postag:JJ' | ||
| 350 | +-0.096715 O b'lemma:e.' | ||
| 351 | +-0.096913 O b'-1:postag:IN' | ||
| 352 | +-0.097475 Gtype b'-1:lemma:mg1655' | ||
| 353 | +-0.097915 Gtype b'+1:lemma:cra' | ||
| 354 | +-0.098266 Supp b'-1:postag:NN' | ||
| 355 | +-0.099523 Gtype b'+1:lemma:-rrb-' | ||
| 356 | +-0.101642 OD b'+1:lemma:0.4' | ||
| 357 | +-0.103503 Gversion b'-1:postag:NN' | ||
| 358 | +-0.104284 Technique b'-1:lemma::' | ||
| 359 | +-0.107474 Air b'-1:postag:CC' | ||
| 360 | +-0.107802 Supp b'+1:lemma:dpd' | ||
| 361 | +-0.109425 O b'lemma:k-12' | ||
| 362 | +-0.109425 O b'word[:2]:K-' | ||
| 363 | +-0.109862 Gtype b'-1:postag:SYM' | ||
| 364 | +-0.110589 O b'-1:lemma:n2' | ||
| 365 | +-0.116375 Med b'postag:NN' | ||
| 366 | +-0.118693 O b'lemma:o2' | ||
| 367 | +-0.118693 O b'word[:2]:O2' | ||
| 368 | +-0.124126 O b'word[:1]:g' | ||
| 369 | +-0.128725 O b'-1:lemma:e.' | ||
| 370 | +-0.131057 O b'-1:postag:VBN' | ||
| 371 | +-0.134797 Supp b'-1:postag:NNP' | ||
| 372 | +-0.134945 Vess b'hUpper' | ||
| 373 | +-0.134945 Vess b'hLower' | ||
| 374 | +-0.141446 O b'lemma:\xc2\xb0c' | ||
| 375 | +-0.141446 O b'word[:1]:\xc2\xb0' | ||
| 376 | +-0.141446 O b'word[:2]:\xc2\xb0C' | ||
| 377 | +-0.148538 O b'-1:lemma:mm' | ||
| 378 | +-0.150981 O b'word[:2]:cr' | ||
| 379 | +-0.154676 OD b'postag:IN' | ||
| 380 | +-0.155036 O b'word[:2]:LB' | ||
| 381 | +-0.160269 O b'-1:lemma:o2' | ||
| 382 | +-0.172623 O b'word[:2]:20' | ||
| 383 | +-0.179442 O b'+1:lemma:fecl2' | ||
| 384 | +-0.180162 O b'+1:lemma:or' | ||
| 385 | +-0.181662 Supp b'-1:postag:VBG' | ||
| 386 | +-0.183004 Air b'postag:CC' | ||
| 387 | +-0.184330 O b'+1:lemma:_' | ||
| 388 | +-0.190642 Gtype b'+1:postag:CD' | ||
| 389 | +-0.193285 Phase b'-1:lemma:at' | ||
| 390 | +-0.196188 O b'lemma:od600' | ||
| 391 | +-0.197981 O b'-1:postag:-LRB-' | ||
| 392 | +-0.201396 pH b'postag:NN' | ||
| 393 | +-0.204068 O b'lemma:co2' | ||
| 394 | +-0.204068 O b'word[:2]:CO' | ||
| 395 | +-0.204520 Supp b'+1:lemma:acetate' | ||
| 396 | +-0.206835 O b'+1:lemma:delta' | ||
| 397 | +-0.210712 O b'word[:2]:gl' | ||
| 398 | +-0.213914 O b'-1:lemma:0.2' | ||
| 399 | +-0.219505 O b'+1:lemma:300' | ||
| 400 | +-0.223188 O b'word[:2]:de' | ||
| 401 | +-0.223436 Gtype b'-1:postag:NN' | ||
| 402 | +-0.224373 O b'-1:lemma:the' | ||
| 403 | +-0.225222 OD b'postag:-LRB-' | ||
| 404 | +-0.225222 OD b'word[:2]:-L' | ||
| 405 | +-0.226307 OD b'lemma:-lrb-' | ||
| 406 | +-0.227748 O b'+1:lemma:dissolve' | ||
| 407 | +-0.230155 Med b'+1:postag:NN' | ||
| 408 | +-0.234353 Air b'-1:lemma:or' | ||
| 409 | +-0.235996 Gtype b'word[:1]:A' | ||
| 410 | +-0.238857 Gtype b'+1:lemma:-lrb-' | ||
| 411 | +-0.240915 O b'+1:lemma:-lcb-' | ||
| 412 | +-0.245779 O b'+1:lemma:%' | ||
| 413 | +-0.254436 O b'+1:lemma:.' | ||
| 414 | +-0.254436 O b'+1:postag:.' | ||
| 415 | +-0.256154 O b'-1:lemma:od600' | ||
| 416 | +-0.258786 Supp b'lemma:2' | ||
| 417 | +-0.267133 O b'lemma:dpd' | ||
| 418 | +-0.267133 O b'word[:2]:DP' | ||
| 419 | +-0.268311 Temp b'-1:lemma:\xc2\xb0c' | ||
| 420 | +-0.268819 O b'lemma:dissolve' | ||
| 421 | +-0.269284 O b'+1:lemma:minimal' | ||
| 422 | +-0.273587 O b'-1:lemma:um' | ||
| 423 | +-0.273587 O b'+1:lemma:paraquat' | ||
| 424 | +-0.283755 O b'+1:lemma:until' | ||
| 425 | +-0.290161 O b'word[:2]:30' | ||
| 426 | +-0.295390 Supp b'+1:postag:VBN' | ||
| 427 | +-0.301685 Anti b'+1:lemma:anti-fur' | ||
| 428 | +-0.310527 Med b'-1:postag:NN' | ||
| 429 | +-0.313589 O b'+1:lemma:arginine' | ||
| 430 | +-0.329477 Temp b'postag:NN' | ||
| 431 | +-0.330016 Gtype b'word[:1]:g' | ||
| 432 | +-0.331259 O b'lemma:150' | ||
| 433 | +-0.331259 O b'+1:lemma:mg/ml' | ||
| 434 | +-0.331259 O b'word[:2]:15' | ||
| 435 | +-0.343722 O b'+1:lemma:antibody' | ||
| 436 | +-0.345190 O b'+1:lemma:rep1' | ||
| 437 | +-0.346985 O b'word[:2]:mg' | ||
| 438 | +-0.352336 O b'-1:lemma:until' | ||
| 439 | +-0.352901 O b'lemma:\xe2\x88\x86' | ||
| 440 | +-0.352901 O b'word[:1]:\xe2\x88\x86' | ||
| 441 | +-0.368005 OD b'+1:postag:CD' | ||
| 442 | +-0.374288 O b'word[:2]:OD' | ||
| 443 | +-0.379040 Technique b'-1:postag::' | ||
| 444 | +-0.379664 O b'word[:1]:K' | ||
| 445 | +-0.381633 Gtype b'-1:lemma:,' | ||
| 446 | +-0.381633 Gtype b'-1:postag:,' | ||
| 447 | +-0.382431 O b'+1:postag:CD' | ||
| 448 | +-0.395128 O b'lemma:of' | ||
| 449 | +-0.395128 O b'word[:2]:of' | ||
| 450 | +-0.403132 O b'+1:lemma:-rrb-' | ||
| 451 | +-0.408197 O b'-1:lemma:1' | ||
| 452 | +-0.409223 Agit b'symb' | ||
| 453 | +-0.412681 O b'+1:lemma:c' | ||
| 454 | +-0.421053 O b'word[:2]:me' | ||
| 455 | +-0.422060 O b'lemma:2h' | ||
| 456 | +-0.422060 O b'-1:lemma:additional' | ||
| 457 | +-0.422060 O b'word[:2]:2h' | ||
| 458 | +-0.432550 O b'+1:lemma:\xc2\xb0c' | ||
| 459 | +-0.442411 O b'-1:lemma:ml' | ||
| 460 | +-0.474987 O b'lemma:20' | ||
| 461 | +-0.493548 Agit b'hUpper' | ||
| 462 | +-0.493548 Agit b'hLower' | ||
| 463 | +-0.497447 O b'-1:lemma:grow' | ||
| 464 | +-0.508442 O b'+1:postag:-RRB-' | ||
| 465 | +-0.511400 O b'lemma:anaerobic' | ||
| 466 | +-0.515457 O b'lemma:37' | ||
| 467 | +-0.515457 O b'word[:2]:37' | ||
| 468 | +-0.516266 Anti b'+1:postag:JJ' | ||
| 469 | +-0.527188 Supp b'+1:lemma:rifampicin' | ||
| 470 | +-0.529171 O b'lemma:anaerobically' | ||
| 471 | +-0.542987 O b'word[:2]:ce' | ||
| 472 | +-0.545817 O b'word[:2]:Fe' | ||
| 473 | +-0.550246 OD b'+1:postag:NN' | ||
| 474 | +-0.555017 O b'-1:lemma:\xe2\x88\x86' | ||
| 475 | +-0.585692 O b'word[:2]:ri' | ||
| 476 | +-0.590663 O b'+1:lemma:cell' | ||
| 477 | +-0.598318 O b'word[:1]:F' | ||
| 478 | +-0.602384 Temp b'+1:lemma:to' | ||
| 479 | +-0.602384 Temp b'+1:postag:TO' | ||
| 480 | +-0.630497 O b'-1:lemma:ompr' | ||
| 481 | +-0.651154 O b'+1:postag:IN' | ||
| 482 | +-0.657357 Air b'+1:postag:JJ' | ||
| 483 | +-0.662332 O b'+1:postag:NNS' | ||
| 484 | +-0.671056 O b'-1:lemma:cra' | ||
| 485 | +-0.677411 O b'postag:RB' | ||
| 486 | +-0.683285 O b'postag:VBP' | ||
| 487 | +-0.704946 Anti b'postag:NNP' | ||
| 488 | +-0.717280 Med b'+1:postag:IN' | ||
| 489 | +-0.747461 Phase b'hUpper' | ||
| 490 | +-0.747461 Phase b'hLower' | ||
| 491 | +-0.771466 Supp b'postag:CD' | ||
| 492 | +-0.774933 O b'word[:1]:N' | ||
| 493 | +-0.784937 Med b'symb' | ||
| 494 | +-0.797919 O b'word[:2]:0.' | ||
| 495 | +-0.823981 O b'word[:1]:d' | ||
| 496 | +-0.834163 O b'lemma:methanol' | ||
| 497 | +-0.845016 Supp b'word[:2]:an' | ||
| 498 | +-0.863890 Temp b'hGreek' | ||
| 499 | +-0.887768 O b'+1:lemma:supplement' | ||
| 500 | +-0.891809 O b'lemma:mid-log' | ||
| 501 | +-0.932608 O b'-1:lemma:dissolve' | ||
| 502 | +-0.932608 O b'+1:lemma:methanol' | ||
| 503 | +-0.938549 Supp b'-1:lemma:%' | ||
| 504 | +-0.941138 O b'+1:lemma:at' | ||
| 505 | +-0.941437 O b'+1:postag:VBG' | ||
| 506 | +-0.966149 O b'-1:lemma:IP' | ||
| 507 | +-0.967650 O b'lemma:rifampicin' | ||
| 508 | +-0.971114 O b'word[:1]:0' | ||
| 509 | +-1.027819 Supp b'word[:1]:C' | ||
| 510 | +-1.038642 O b'-1:lemma:co2' | ||
| 511 | +-1.053342 O b'-1:lemma:sample' | ||
| 512 | +-1.074523 O b'-1:lemma:37' | ||
| 513 | +-1.082863 O b'lemma:wt' | ||
| 514 | +-1.085639 O b'word[:1]:\xce\x94' | ||
| 515 | +-1.088972 O b'+1:lemma:+' | ||
| 516 | +-1.101307 O b'-1:lemma:rpob' | ||
| 517 | +-1.101534 Gtype b'lemma:delta' | ||
| 518 | +-1.131224 O b'-1:postag:VBG' | ||
| 519 | +-1.200680 O b'+1:lemma:g/l' | ||
| 520 | +-1.209964 O b'-1:lemma:nsrr' | ||
| 521 | +-1.223269 Gtype b'word[:1]:C' | ||
| 522 | +-1.236557 Air b'-1:postag:JJ' | ||
| 523 | +-1.342495 O b'+1:lemma:in' | ||
| 524 | +-1.418170 Air b'postag:NN' | ||
| 525 | +-1.475103 Technique b'postag:NN' | ||
| 526 | +-1.489457 Supp b'postag:JJ' | ||
| 527 | +-1.565345 Phase b'postag:JJ' | ||
| 528 | +-1.566076 O b'word[:1]:P' | ||
| 529 | +-1.602127 Supp b'hGreek' | ||
| 530 | +-1.627987 O b'+1:lemma:hour' | ||
| 531 | +-1.632857 O b'-1:postag::' | ||
| 532 | +-1.709919 O b'word[:2]:Ch' | ||
| 533 | +-1.721470 Supp b'symb' | ||
| 534 | +-2.064654 O b'+1:lemma:2' | ||
| 535 | +-2.235497 O b'-1:lemma:2' | ||
| 536 | +-2.286957 OD b'word[:1]:-' | ||
| 537 | +-2.535031 O b'+1:lemma:1' | ||
| 538 | +-3.735809 O b'-1:lemma:_' | ||
| 539 | +-3.940448 O b'-1:lemma::' | ||
| 540 | + |
CRF/reports/report_Run2_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.016463867524667154, 'c2': 0.009787977090088149} | ||
| 5 | +best CV score:0.8002661257453753 | ||
| 6 | +model size: 0.09M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7993777341659613 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.812 0.912 0.860 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.667 0.800 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.865 0.783 0.822 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.877 0.684 0.769 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.870 0.758 0.799 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.618554 | ||
| 32 | +OD -> OD 6.046990 | ||
| 33 | +Med -> Med 5.731787 | ||
| 34 | +Anti -> Anti 5.560967 | ||
| 35 | +Temp -> Temp 5.475319 | ||
| 36 | +O -> O 5.246611 | ||
| 37 | +Air -> Air 5.069288 | ||
| 38 | +Gversion -> Gversion 4.782679 | ||
| 39 | +Phase -> Phase 4.419771 | ||
| 40 | +Gtype -> Gtype 4.416987 | ||
| 41 | +Supp -> Supp 4.342876 | ||
| 42 | +Technique -> Technique 3.476989 | ||
| 43 | +pH -> pH 2.858102 | ||
| 44 | +Substrain -> Gtype 1.991185 | ||
| 45 | +O -> Supp 1.682496 | ||
| 46 | +O -> Technique 1.282752 | ||
| 47 | +Gtype -> Supp 1.102213 | ||
| 48 | +O -> Temp 1.095977 | ||
| 49 | +O -> Gtype 1.088815 | ||
| 50 | +Technique -> Air 0.953696 | ||
| 51 | +Air -> O 0.896546 | ||
| 52 | +Gtype -> pH 0.886031 | ||
| 53 | +O -> Anti 0.734178 | ||
| 54 | +O -> Strain 0.608646 | ||
| 55 | +Gtype -> Air 0.454671 | ||
| 56 | +O -> Gversion 0.272689 | ||
| 57 | +O -> Vess 0.158893 | ||
| 58 | +O -> pH 0.140174 | ||
| 59 | +Med -> O 0.029214 | ||
| 60 | +Phase -> O 0.002020 | ||
| 61 | +O -> Agit -0.000006 | ||
| 62 | +Anti -> Med -0.000156 | ||
| 63 | +Gversion -> Temp -0.000292 | ||
| 64 | +Temp -> O -0.000334 | ||
| 65 | +Gtype -> Substrain -0.000924 | ||
| 66 | +Agit -> OD -0.002021 | ||
| 67 | +Strain -> Supp -0.005596 | ||
| 68 | +Temp -> OD -0.020991 | ||
| 69 | +O -> Phase -0.034932 | ||
| 70 | +Med -> Technique -0.051093 | ||
| 71 | +Med -> Gtype -0.075674 | ||
| 72 | +Gtype -> Temp -0.095825 | ||
| 73 | +Gversion -> Gtype -0.096016 | ||
| 74 | +OD -> Phase -0.103930 | ||
| 75 | +Air -> Technique -0.110545 | ||
| 76 | +Gversion -> Technique -0.112689 | ||
| 77 | +Phase -> Temp -0.112941 | ||
| 78 | +O -> Med -0.122397 | ||
| 79 | +Gversion -> OD -0.151378 | ||
| 80 | +OD -> Anti -0.154828 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Gtype -> O -0.318325 | ||
| 85 | +Phase -> pH -0.345234 | ||
| 86 | +Air -> Gtype -0.347582 | ||
| 87 | +Phase -> Air -0.350325 | ||
| 88 | +Supp -> O -0.358385 | ||
| 89 | +Phase -> Gtype -0.365635 | ||
| 90 | +Gversion -> Air -0.381458 | ||
| 91 | +Technique -> O -0.390564 | ||
| 92 | +Phase -> Med -0.406160 | ||
| 93 | +Phase -> Supp -0.460254 | ||
| 94 | +Technique -> Supp -0.517689 | ||
| 95 | +Med -> Air -0.551360 | ||
| 96 | +Anti -> Gtype -0.565812 | ||
| 97 | +Gtype -> Technique -0.566337 | ||
| 98 | +Air -> Phase -0.631229 | ||
| 99 | +OD -> Supp -0.647555 | ||
| 100 | +Air -> Temp -0.656794 | ||
| 101 | +Supp -> Gversion -0.715756 | ||
| 102 | +Supp -> Phase -0.716453 | ||
| 103 | +Gtype -> Gversion -0.757530 | ||
| 104 | +OD -> Temp -0.788537 | ||
| 105 | +Gtype -> Phase -0.824421 | ||
| 106 | +Supp -> Gtype -0.884540 | ||
| 107 | +Supp -> OD -0.900562 | ||
| 108 | +Supp -> Anti -0.903053 | ||
| 109 | +Phase -> Technique -0.906097 | ||
| 110 | +Anti -> OD -0.909132 | ||
| 111 | +O -> Air -0.914911 | ||
| 112 | +Agit -> O -0.935018 | ||
| 113 | +Gtype -> Med -0.944769 | ||
| 114 | +OD -> Gtype -0.960373 | ||
| 115 | +OD -> Air -0.960499 | ||
| 116 | +Supp -> Temp -0.978389 | ||
| 117 | +OD -> Med -1.056468 | ||
| 118 | +Supp -> Technique -1.067708 | ||
| 119 | +Supp -> Air -1.075407 | ||
| 120 | +Temp -> Med -1.177952 | ||
| 121 | +Air -> Med -1.190708 | ||
| 122 | +Air -> Supp -1.204177 | ||
| 123 | +OD -> O -1.212915 | ||
| 124 | +Gtype -> Anti -1.370912 | ||
| 125 | +Gtype -> OD -1.436838 | ||
| 126 | +Air -> OD -1.503021 | ||
| 127 | +Technique -> pH -1.506307 | ||
| 128 | +Technique -> Gtype -1.536980 | ||
| 129 | +Substrain -> O -1.668439 | ||
| 130 | +Technique -> OD -1.715161 | ||
| 131 | +Supp -> Med -1.733906 | ||
| 132 | +Med -> Supp -2.443927 | ||
| 133 | +Phase -> OD -3.131759 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +9.305065 O b'lemma:_' | ||
| 138 | +8.732993 Phase b'lemma:stationary' | ||
| 139 | +7.760917 O b'lemma:1' | ||
| 140 | +7.168896 Supp b'lemma:Iron' | ||
| 141 | +7.028020 Phase b'lemma:mid-log' | ||
| 142 | +6.779175 Air b'lemma:aerobic' | ||
| 143 | +6.665098 O b'lemma:2' | ||
| 144 | +6.423370 O b'lemma:rpob' | ||
| 145 | +6.362007 Technique b'lemma:chipseq' | ||
| 146 | +6.331838 Air b'lemma:anaerobic' | ||
| 147 | +6.325395 Strain b'lemma:k-12' | ||
| 148 | +6.235497 Technique b'lemma:ChIP-exo' | ||
| 149 | +6.089690 O b'lemma:3' | ||
| 150 | +5.978696 O b'-1:lemma:tag' | ||
| 151 | +5.761282 Supp b'lemma:pq' | ||
| 152 | +5.719069 Air b'-1:lemma:ChIP-Seq' | ||
| 153 | +5.577060 O b'lemma:Cra' | ||
| 154 | +5.510085 O b'lemma:rep1' | ||
| 155 | +5.467485 Med b'lemma:MOPS' | ||
| 156 | +5.467177 Gtype b'lemma:flag-tag' | ||
| 157 | +5.467177 Gtype b'-1:lemma:c-terminal' | ||
| 158 | +5.453183 O b'lemma:rep2' | ||
| 159 | +5.426293 Gtype b'lemma:\xce\xb4cra' | ||
| 160 | +5.397017 Gversion b'lemma:asm584v2' | ||
| 161 | +5.390386 Supp b'lemma:nitrate' | ||
| 162 | +5.341842 Supp b'lemma:nh4cl' | ||
| 163 | +5.337281 Gtype b'lemma:arca8myc' | ||
| 164 | +5.304554 O b'lemma:rep3' | ||
| 165 | +5.196226 Supp b'lemma:glucose' | ||
| 166 | +5.117424 Substrain b'lemma:mg1655' | ||
| 167 | +5.026581 Air b'lemma:Aerobic' | ||
| 168 | +4.803005 Med b'lemma:lb' | ||
| 169 | +4.772452 Gtype b'lemma:wt' | ||
| 170 | +4.771894 Supp b'lemma:acetate' | ||
| 171 | +4.766600 Supp b'lemma:no3' | ||
| 172 | +4.729731 Gtype b'lemma:delta-arca' | ||
| 173 | +4.713097 Technique b'lemma:rna-seq' | ||
| 174 | +4.682193 O b'lemma:b' | ||
| 175 | +4.655495 O b'-1:lemma:ChIP-exo' | ||
| 176 | +4.654042 O b'lemma:Custom' | ||
| 177 | +4.608813 O b'lemma:\xcf\x8332' | ||
| 178 | +4.600330 Med b'lemma:LB' | ||
| 179 | +4.589780 Anti b'lemma:none' | ||
| 180 | +4.569387 O b'-1:lemma:Aerobic' | ||
| 181 | +4.552809 Supp b'lemma:Fe' | ||
| 182 | +4.549722 Gtype b'lemma:fnr8myc' | ||
| 183 | +4.469111 O b'lemma:a' | ||
| 184 | +4.442862 Supp b'+1:lemma:\xc2\xb5m' | ||
| 185 | +4.411648 Anti b'lemma:seqa' | ||
| 186 | +4.399167 Technique b'lemma:chip-seq' | ||
| 187 | +4.385270 O b'lemma:with' | ||
| 188 | +4.372699 O b'-1:lemma:0.3-0.35' | ||
| 189 | +4.269887 Supp b'+1:lemma:Deficient' | ||
| 190 | +4.261397 Supp b'lemma:fructose' | ||
| 191 | +4.249331 O b'lemma:.' | ||
| 192 | +4.249331 O b'postag:.' | ||
| 193 | +4.242020 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 194 | +4.234560 Supp b'lemma:rifampicin' | ||
| 195 | +4.204294 Supp b'-1:lemma:Cra' | ||
| 196 | +4.144998 Technique b'lemma:rnaseq' | ||
| 197 | +4.131518 O b'-1:lemma:glucose' | ||
| 198 | +4.112814 O b'lemma:CEL' | ||
| 199 | +4.104546 Gtype b'lemma:delta-fnr' | ||
| 200 | +4.079795 Supp b'+1:lemma:1' | ||
| 201 | +4.079552 O b'postag::' | ||
| 202 | +4.058149 Gversion b'lemma:chip-seq' | ||
| 203 | +4.037325 O b'lemma:for' | ||
| 204 | +4.034489 Supp b'lemma:dpd' | ||
| 205 | +4.010338 Strain b'+1:lemma:substr' | ||
| 206 | +3.921894 Supp b'lemma:arginine' | ||
| 207 | +3.871845 Med b'lemma:m63' | ||
| 208 | +3.869832 O b'lemma:-' | ||
| 209 | +3.804951 OD b'lemma:od450' | ||
| 210 | +3.804811 OD b'lemma:od600' | ||
| 211 | +3.798413 Gtype b'+1:lemma:type' | ||
| 212 | +3.780914 Supp b'+1:lemma:2' | ||
| 213 | +3.777061 O b'lemma:oxyr' | ||
| 214 | +3.772675 Gtype b'lemma:nsrr' | ||
| 215 | +3.768154 O b'postag:IN' | ||
| 216 | +3.745620 O b'-1:lemma:0.3' | ||
| 217 | +3.739942 O b'-1:lemma:lb' | ||
| 218 | +3.716105 O b'+1:postag:RB' | ||
| 219 | +3.704808 O b'lemma:ompr' | ||
| 220 | +3.699123 Gtype b'lemma:\xce\xb4fur' | ||
| 221 | +3.679821 O b'-1:lemma:anaerobic' | ||
| 222 | +3.674972 Gtype b'lemma:WT' | ||
| 223 | +3.633705 Med b'+1:lemma:0.4' | ||
| 224 | +3.613670 O b'lemma:chip-arca' | ||
| 225 | +3.584593 Anti b'lemma:anti-myc' | ||
| 226 | +3.583514 Gtype b'+1:lemma:with' | ||
| 227 | +3.582395 Gtype b'lemma:type' | ||
| 228 | +3.580941 Gversion b'lemma:nc' | ||
| 229 | +3.569260 Vess b'lemma:flask' | ||
| 230 | +3.569260 Vess b'-1:lemma:warm' | ||
| 231 | +3.558952 Gtype b'lemma:\xce\xb4soxs' | ||
| 232 | +3.551122 O b'+1:lemma:od600' | ||
| 233 | +3.521427 OD b'+1:lemma:stationary' | ||
| 234 | +3.499509 Gtype b'lemma:\xe2\x88\x86' | ||
| 235 | +3.497229 O b'lemma:s' | ||
| 236 | +3.444243 O b'lemma:affyexp' | ||
| 237 | +3.441867 O b'lemma:at' | ||
| 238 | +3.432521 O b'lemma:argr' | ||
| 239 | +3.430692 O b'lemma:2-3' | ||
| 240 | +3.429569 O b'lemma:or' | ||
| 241 | +3.420226 pH b'lemma:ph5' | ||
| 242 | +3.420226 pH b'+1:lemma:.5' | ||
| 243 | +3.329303 Supp b'+1:lemma:_' | ||
| 244 | +3.325338 Air b'lemma:anerobically' | ||
| 245 | +3.313930 Phase b'+1:lemma:for' | ||
| 246 | +3.313428 Air b'lemma:Anaerobic' | ||
| 247 | +3.306548 Gtype b'lemma:\xce\xb4ompr' | ||
| 248 | +3.295126 Gversion b'lemma:u00096' | ||
| 249 | +3.295126 Gversion b'+1:lemma:.2' | ||
| 250 | +3.293291 O b'lemma:purr' | ||
| 251 | +3.280062 O b'postag:VBN' | ||
| 252 | +3.276907 Med b'+1:lemma:minimal' | ||
| 253 | +3.266429 Gversion b'lemma:.2' | ||
| 254 | +3.266429 Gversion b'-1:lemma:u00096' | ||
| 255 | +3.204837 Technique b'lemma:ChIP-Seq' | ||
| 256 | +3.195028 Supp b'lemma:Leu' | ||
| 257 | +3.194814 Air b'postag:RB' | ||
| 258 | +3.190453 Gtype b'lemma:wild-type' | ||
| 259 | +3.189580 Gversion b'lemma:000913' | ||
| 260 | +3.165016 O b'+1:lemma:o.d.' | ||
| 261 | +3.164940 O b'-1:lemma:stpa' | ||
| 262 | +3.152706 Gtype b'-1:lemma:ptac' | ||
| 263 | +3.148350 Supp b'-1:lemma:+' | ||
| 264 | +3.129438 Gversion b'-1:lemma:nc' | ||
| 265 | +3.118509 Supp b'lemma:nacl' | ||
| 266 | +3.114692 O b'lemma:Lrp' | ||
| 267 | +3.092621 Supp b'lemma:Adenine' | ||
| 268 | +3.091939 O b'lemma:soxs' | ||
| 269 | +3.091939 O b'lemma:soxr' | ||
| 270 | +3.077192 O b'-1:lemma:type' | ||
| 271 | +3.075201 Gtype b'lemma:pk4854' | ||
| 272 | +3.057817 Med b'+1:lemma:2.0' | ||
| 273 | +3.055002 Gtype b'lemma:deltaseqa' | ||
| 274 | +3.055002 Gtype b'-1:lemma:old' | ||
| 275 | +3.024702 Temp b'lemma:\xc2\xb0c' | ||
| 276 | +3.023864 Gtype b'lemma:\xce\xb4soxr' | ||
| 277 | +3.009504 Technique b'-1:lemma:chip-exo' | ||
| 278 | +2.999113 O b'+1:lemma:chip-seq' | ||
| 279 | +2.997979 Gtype b'lemma:\xce\xb4oxyr' | ||
| 280 | +2.994098 O b'+1:lemma:pq' | ||
| 281 | +2.988197 Technique b'-1:lemma:IP' | ||
| 282 | +2.978971 Gtype b'+1:lemma:flagtag' | ||
| 283 | +2.950109 Gtype b'+1:lemma:pq' | ||
| 284 | +2.932317 O b'lemma:Fur' | ||
| 285 | +2.930678 Temp b'lemma:43' | ||
| 286 | +2.927639 Supp b'+1:lemma:hour' | ||
| 287 | +2.912329 Technique b'-1:lemma:input' | ||
| 288 | +2.909510 Gtype b'lemma:ptac' | ||
| 289 | +2.890332 O b'+1:lemma:mid-log' | ||
| 290 | +2.887693 Anti b'+1:lemma:antibody' | ||
| 291 | +2.861197 Phase b'-1:lemma:until' | ||
| 292 | +2.834560 O b'lemma:pt7' | ||
| 293 | +2.813666 Temp b'-1:lemma:43' | ||
| 294 | +2.812461 Med b'-1:lemma:LB' | ||
| 295 | +2.807067 O b'+1:lemma:anti-fur' | ||
| 296 | +2.805769 Med b'lemma:glucose' | ||
| 297 | +2.792580 Med b'postag:NNP' | ||
| 298 | +2.791499 Substrain b'+1:lemma:phtpg' | ||
| 299 | +2.780205 Anti b'lemma:anti-rpos' | ||
| 300 | +2.775436 O b'lemma:chip' | ||
| 301 | +2.773005 Air b'lemma:anaerobically' | ||
| 302 | +2.745128 Technique b'+1:lemma:chip-exo' | ||
| 303 | +2.707884 Temp b'-1:lemma:37' | ||
| 304 | +2.695840 Gtype b'-1:lemma:rpob' | ||
| 305 | +2.695400 O b'lemma:A' | ||
| 306 | +2.688169 Gtype b'+1:lemma:aerobic' | ||
| 307 | +2.675347 O b'-1:lemma:media' | ||
| 308 | +2.666679 Gversion b'lemma:_' | ||
| 309 | +2.657459 O b'lemma:chip-fnr' | ||
| 310 | +2.651315 O b'+1:lemma:sparging' | ||
| 311 | +2.632748 Air b'-1:lemma:-' | ||
| 312 | +2.627781 Med b'-1:lemma:ml' | ||
| 313 | +2.615678 Temp b'lemma:37' | ||
| 314 | +2.605568 Supp b'lemma:iptg' | ||
| 315 | +2.594624 O b'postag:SYM' | ||
| 316 | +2.562170 Med b'lemma:L' | ||
| 317 | +2.562170 Med b'+1:lemma:broth' | ||
| 318 | +2.557929 Air b'-1:lemma:anerobically' | ||
| 319 | +2.557567 Supp b'lemma:methanol' | ||
| 320 | +2.541889 Air b'+1:lemma:at' | ||
| 321 | +2.532330 pH b'lemma:.5' | ||
| 322 | +2.532330 pH b'-1:lemma:ph5' | ||
| 323 | +2.504689 Gtype b'lemma:dfnr' | ||
| 324 | +2.502393 Supp b'lemma:leucine' | ||
| 325 | +2.498877 O b'+1:postag:NNP' | ||
| 326 | +2.497838 O b'lemma:culture' | ||
| 327 | +2.494675 Supp b'+1:lemma:leucine' | ||
| 328 | +2.484413 Med b'+1:lemma:-lrb-' | ||
| 329 | +2.481062 Technique b'postag:NNP' | ||
| 330 | +2.479247 O b'lemma:genotype/variation' | ||
| 331 | +2.478491 O b'lemma:delta' | ||
| 332 | +2.475426 Gtype b'lemma:soxs-8myc' | ||
| 333 | +2.475426 Gtype b'lemma:soxr-8myc' | ||
| 334 | +2.462314 Temp b'-1:lemma:\xcf\x8332' | ||
| 335 | +2.420303 O b'-1:lemma:min' | ||
| 336 | +2.407878 O b'-1:lemma:\xc2\xb0c' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.078472 Gtype b'-1:lemma:,' | ||
| 341 | +-0.078472 Gtype b'-1:postag:,' | ||
| 342 | +-0.082841 Gtype b'+1:lemma:cra' | ||
| 343 | +-0.082999 O b'-1:postag:IN' | ||
| 344 | +-0.084148 O b'+1:lemma:sample' | ||
| 345 | +-0.086745 Air b'-1:lemma:-rrb-' | ||
| 346 | +-0.089656 O b'-1:lemma:delta' | ||
| 347 | +-0.090120 Supp b'+1:lemma:glucose' | ||
| 348 | +-0.094631 Med b'+1:lemma:media' | ||
| 349 | +-0.096766 OD b'+1:postag:CD' | ||
| 350 | +-0.101591 Anti b'+1:postag:JJ' | ||
| 351 | +-0.105414 Air b'postag:CD' | ||
| 352 | +-0.106119 O b'+1:lemma:5' | ||
| 353 | +-0.106327 O b'lemma:glucose' | ||
| 354 | +-0.106774 O b'-1:lemma:300' | ||
| 355 | +-0.110381 O b'+1:lemma:strain' | ||
| 356 | +-0.115429 OD b'+1:lemma:mid-log' | ||
| 357 | +-0.116504 O b'-1:lemma:o2' | ||
| 358 | +-0.116849 O b'lemma:8' | ||
| 359 | +-0.117115 Air b'-1:postag:-RRB-' | ||
| 360 | +-0.131943 O b'-1:postag:VBP' | ||
| 361 | +-0.140837 O b'+1:lemma:-rrb-' | ||
| 362 | +-0.145581 O b'lemma:o2' | ||
| 363 | +-0.145602 Med b'-1:postag:NN' | ||
| 364 | +-0.148797 Gtype b'+1:lemma:a' | ||
| 365 | +-0.149824 O b'+1:lemma:antibody' | ||
| 366 | +-0.155765 OD b'+1:lemma:0.4' | ||
| 367 | +-0.160857 O b'-1:lemma:Fe' | ||
| 368 | +-0.165249 Supp b'-1:postag:NN' | ||
| 369 | +-0.176258 O b'lemma:n2' | ||
| 370 | +-0.179426 Gtype b'-1:postag:DT' | ||
| 371 | +-0.190182 O b'lemma:nacl' | ||
| 372 | +-0.190914 O b'lemma:paraquat' | ||
| 373 | +-0.199978 O b'-1:lemma:affinity' | ||
| 374 | +-0.202133 Phase b'lemma:pahse' | ||
| 375 | +-0.206981 O b'-1:lemma:-lrb-' | ||
| 376 | +-0.209922 O b'-1:lemma:purify' | ||
| 377 | +-0.212225 O b'-1:lemma:e.' | ||
| 378 | +-0.214834 Phase b'-1:lemma:at' | ||
| 379 | +-0.215972 O b'lemma:grow' | ||
| 380 | +-0.220853 O b'+1:postag:-RRB-' | ||
| 381 | +-0.233967 O b'+1:lemma:0.4' | ||
| 382 | +-0.234246 O b'lemma:m63' | ||
| 383 | +-0.234336 O b'+1:lemma:delta' | ||
| 384 | +-0.236935 O b'-1:lemma:iptg' | ||
| 385 | +-0.237356 Supp b'-1:lemma:-' | ||
| 386 | +-0.238564 Temp b'-1:postag:IN' | ||
| 387 | +-0.241298 O b'lemma:lb' | ||
| 388 | +-0.252180 Air b'-1:lemma:or' | ||
| 389 | +-0.259409 Gtype b'-1:postag:CD' | ||
| 390 | +-0.263557 Gtype b'postag:CD' | ||
| 391 | +-0.263957 O b'lemma:e.' | ||
| 392 | +-0.273851 O b'+1:lemma:-lcb-' | ||
| 393 | +-0.277750 Supp b'-1:lemma:and' | ||
| 394 | +-0.279144 O b'-1:lemma:um' | ||
| 395 | +-0.279144 O b'+1:lemma:paraquat' | ||
| 396 | +-0.282397 O b'-1:postag:-LRB-' | ||
| 397 | +-0.283298 Supp b'+1:postag:IN' | ||
| 398 | +-0.287914 Gtype b'+1:postag:NNS' | ||
| 399 | +-0.295366 O b'lemma:co2' | ||
| 400 | +-0.297637 Med b'+1:postag:NNS' | ||
| 401 | +-0.299889 Med b'-1:lemma:MOPS' | ||
| 402 | +-0.302541 O b'lemma:aerobically' | ||
| 403 | +-0.306345 Supp b'lemma:and' | ||
| 404 | +-0.309099 O b'-1:lemma:n2' | ||
| 405 | +-0.312324 Gversion b'+1:postag:NN' | ||
| 406 | +-0.315967 O b'-1:lemma:g/l' | ||
| 407 | +-0.323765 O b'+1:lemma:or' | ||
| 408 | +-0.331216 O b'-1:lemma:20' | ||
| 409 | +-0.334167 O b'-1:lemma:30' | ||
| 410 | +-0.344013 O b'+1:lemma:cell' | ||
| 411 | +-0.344949 O b'postag:RB' | ||
| 412 | +-0.346100 O b'lemma:of' | ||
| 413 | +-0.352206 Temp b'-1:lemma:\xc2\xb0c' | ||
| 414 | +-0.355150 OD b'postag:JJ' | ||
| 415 | +-0.358507 O b'+1:lemma:from' | ||
| 416 | +-0.364055 O b'+1:lemma:shake' | ||
| 417 | +-0.367716 O b'lemma:minimal' | ||
| 418 | +-0.372888 Gtype b'postag:NNS' | ||
| 419 | +-0.374545 O b'+1:lemma:.' | ||
| 420 | +-0.374545 O b'+1:postag:.' | ||
| 421 | +-0.376161 pH b'postag:NN' | ||
| 422 | +-0.376856 O b'-1:lemma:minimal' | ||
| 423 | +-0.379126 Phase b'-1:postag:JJ' | ||
| 424 | +-0.380474 O b'lemma:mg1655' | ||
| 425 | +-0.388065 Technique b'-1:lemma::' | ||
| 426 | +-0.398201 O b'+1:postag:IN' | ||
| 427 | +-0.405322 O b'+1:lemma:minimal' | ||
| 428 | +-0.424455 O b'lemma:30' | ||
| 429 | +-0.427384 O b'+1:lemma:until' | ||
| 430 | +-0.436028 O b'-1:lemma:fresh' | ||
| 431 | +-0.460571 O b'-1:lemma:from' | ||
| 432 | +-0.465690 O b'-1:lemma:grow' | ||
| 433 | +-0.476082 O b'lemma:\xc2\xb0c' | ||
| 434 | +-0.479886 O b'+1:lemma:b' | ||
| 435 | +-0.490814 OD b'+1:postag:NN' | ||
| 436 | +-0.494543 Med b'+1:postag:IN' | ||
| 437 | +-0.502282 O b'-1:lemma:0.1' | ||
| 438 | +-0.522523 O b'+1:lemma:%' | ||
| 439 | +-0.524523 Supp b'+1:postag:VBN' | ||
| 440 | +-0.531557 O b'+1:lemma:c' | ||
| 441 | +-0.538489 O b'+1:lemma:_' | ||
| 442 | +-0.550066 OD b'lemma:-lrb-' | ||
| 443 | +-0.556057 Med b'+1:postag:NN' | ||
| 444 | +-0.559263 O b'-1:lemma:with' | ||
| 445 | +-0.566146 O b'+1:lemma:300' | ||
| 446 | +-0.569839 O b'-1:lemma:od600' | ||
| 447 | +-0.574777 O b'-1:lemma:rifampicin' | ||
| 448 | +-0.580814 O b'-1:lemma:~' | ||
| 449 | +-0.580908 O b'lemma:phase' | ||
| 450 | +-0.595586 O b'-1:lemma:co2' | ||
| 451 | +-0.603665 O b'+1:lemma:dissolve' | ||
| 452 | +-0.610355 O b'lemma:k-12' | ||
| 453 | +-0.623982 O b'-1:lemma:mid-log' | ||
| 454 | +-0.633959 Med b'postag:CD' | ||
| 455 | +-0.640260 O b'+1:lemma:Aerobic' | ||
| 456 | +-0.655574 OD b'postag:-LRB-' | ||
| 457 | +-0.666724 Technique b'-1:postag::' | ||
| 458 | +-0.670459 O b'lemma:od600' | ||
| 459 | +-0.673345 OD b'+1:lemma:and' | ||
| 460 | +-0.674316 Temp b'postag:NN' | ||
| 461 | +-0.676209 Gtype b'lemma:delta' | ||
| 462 | +-0.694986 Gtype b'-1:postag:SYM' | ||
| 463 | +-0.708935 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 464 | +-0.723413 O b'+1:lemma:phase' | ||
| 465 | +-0.728416 O b'-1:lemma:cra' | ||
| 466 | +-0.739107 O b'lemma:dissolve' | ||
| 467 | +-0.745574 Med b'lemma:-lrb-' | ||
| 468 | +-0.748120 O b'-1:lemma:1' | ||
| 469 | +-0.779677 Med b'postag:-LRB-' | ||
| 470 | +-0.783075 Supp b'-1:postag:VBG' | ||
| 471 | +-0.805015 Supp b'+1:lemma:rifampicin' | ||
| 472 | +-0.822331 O b'lemma:mid-log' | ||
| 473 | +-0.826614 O b'+1:lemma:\xc2\xb0c' | ||
| 474 | +-0.828084 O b'-1:lemma:\xe2\x88\x86' | ||
| 475 | +-0.834813 O b'lemma:150' | ||
| 476 | +-0.834813 O b'+1:lemma:mg/ml' | ||
| 477 | +-0.847218 O b'+1:lemma:arginine' | ||
| 478 | +-0.850600 O b'lemma:purify' | ||
| 479 | +-0.856637 O b'+1:lemma:rep1' | ||
| 480 | +-0.863375 Supp b'postag:CC' | ||
| 481 | +-0.911226 O b'+1:lemma:0.3' | ||
| 482 | +-0.939105 OD b'+1:postag:CC' | ||
| 483 | +-0.955944 Air b'-1:postag:JJ' | ||
| 484 | +-0.962224 O b'lemma:media' | ||
| 485 | +-0.965799 O b'-1:lemma:0.2' | ||
| 486 | +-0.969028 O b'lemma:anaerobically' | ||
| 487 | +-0.984393 Supp b'+1:lemma:acetate' | ||
| 488 | +-0.986157 O b'lemma:20' | ||
| 489 | +-0.994939 O b'+1:postag:NNS' | ||
| 490 | +-1.003238 O b'lemma:\xe2\x88\x86' | ||
| 491 | +-1.020262 O b'lemma:dpd' | ||
| 492 | +-1.021474 O b'+1:postag:VBG' | ||
| 493 | +-1.023814 O b'-1:lemma:until' | ||
| 494 | +-1.028655 Temp b'+1:lemma:to' | ||
| 495 | +-1.028655 Temp b'+1:postag:TO' | ||
| 496 | +-1.034923 O b'+1:lemma:fecl2' | ||
| 497 | +-1.048621 O b'+1:lemma:in' | ||
| 498 | +-1.093228 Anti b'+1:lemma:anti-fur' | ||
| 499 | +-1.117750 O b'+1:lemma:supplement' | ||
| 500 | +-1.118079 O b'-1:lemma:dissolve' | ||
| 501 | +-1.118079 O b'+1:lemma:methanol' | ||
| 502 | +-1.153383 Med b'-1:postag:IN' | ||
| 503 | +-1.161827 O b'lemma:0.1' | ||
| 504 | +-1.240288 O b'lemma:0.2' | ||
| 505 | +-1.240360 O b'lemma:0.3' | ||
| 506 | +-1.281903 O b'-1:lemma:ml' | ||
| 507 | +-1.331319 O b'lemma:\xce\xb4fur' | ||
| 508 | +-1.347884 O b'lemma:2h' | ||
| 509 | +-1.347884 O b'-1:lemma:additional' | ||
| 510 | +-1.412330 O b'lemma:fecl2' | ||
| 511 | +-1.425201 O b'lemma:anaerobic' | ||
| 512 | +-1.445822 O b'+1:lemma:at' | ||
| 513 | +-1.482178 Air b'+1:postag:JJ' | ||
| 514 | +-1.484222 O b'-1:lemma:sample' | ||
| 515 | +-1.563764 Supp b'-1:lemma:%' | ||
| 516 | +-1.568716 O b'+1:lemma:g/l' | ||
| 517 | +-1.573165 O b'-1:postag:VBG' | ||
| 518 | +-1.579364 Air b'postag:NN' | ||
| 519 | +-1.717872 O b'-1:lemma:IP' | ||
| 520 | +-1.738726 O b'postag:VBP' | ||
| 521 | +-1.761183 Supp b'postag:JJ' | ||
| 522 | +-1.765703 O b'lemma:wt' | ||
| 523 | +-1.767819 O b'lemma:37' | ||
| 524 | +-1.807701 O b'-1:postag::' | ||
| 525 | +-1.827545 O b'lemma:rifampicin' | ||
| 526 | +-1.961081 Anti b'postag:NNP' | ||
| 527 | +-2.001886 O b'-1:lemma:ompr' | ||
| 528 | +-2.126948 O b'-1:lemma:nsrr' | ||
| 529 | +-2.271346 O b'-1:lemma:rpob' | ||
| 530 | +-2.333080 O b'lemma:methanol' | ||
| 531 | +-2.336287 O b'-1:lemma:37' | ||
| 532 | +-2.381339 O b'-1:lemma:2' | ||
| 533 | +-2.515516 O b'+1:lemma:2' | ||
| 534 | +-2.555444 O b'+1:lemma:hour' | ||
| 535 | +-2.633630 O b'+1:lemma:+' | ||
| 536 | +-2.844080 Phase b'postag:JJ' | ||
| 537 | +-3.202166 O b'+1:lemma:1' | ||
| 538 | +-3.918526 O b'-1:lemma:_' | ||
| 539 | +-4.322819 O b'-1:lemma::' | ||
| 540 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.09081091923387723, 'c2': 0.00038627878700387623} | 4 | +best params:{'c1': 0.15010361345548673, 'c2': 5.707111790479162e-05} |
| 5 | -best CV score:0.7938633983009262 | 5 | +best CV score:0.797496608146535 |
| 6 | -model size: 0.07M | 6 | +model size: 0.06M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.786870840829875 | 8 | +Flat F1: 0.7827228028395358 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 0.789 0.405 0.536 37 | 11 | OD 0.789 0.405 0.536 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.776 0.912 0.839 57 | 14 | + Med 0.803 0.860 0.831 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | Phase 1.000 0.947 0.973 19 | 18 | Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.754 0.742 0.748 62 | 19 | + Air 0.780 0.742 0.760 62 |
| 20 | Anti 0.571 0.444 0.500 9 | 20 | Anti 0.571 0.444 0.500 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.860 0.811 0.835 106 | 22 | + Gtype 0.857 0.792 0.824 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.819 0.699 0.754 136 | 24 | + Supp 0.810 0.691 0.746 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.824 0.765 0.787 480 | 27 | +avg / total 0.828 0.752 0.783 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -Agit -> Agit 7.136396 | 31 | +Agit -> Agit 7.341089 |
| 32 | -OD -> OD 6.491625 | 32 | +OD -> OD 6.495857 |
| 33 | -Temp -> Temp 6.283086 | 33 | +Anti -> Anti 6.092589 |
| 34 | -Anti -> Anti 6.213232 | 34 | +Med -> Med 6.071567 |
| 35 | -Med -> Med 5.995903 | 35 | +Temp -> Temp 5.874329 |
| 36 | -Phase -> Phase 5.618998 | 36 | +Air -> Air 5.660813 |
| 37 | -Gtype -> Gtype 5.237438 | 37 | +Gtype -> Gtype 5.201158 |
| 38 | -Air -> Air 5.151876 | 38 | +Phase -> Phase 5.016982 |
| 39 | -Gversion -> Gversion 4.933604 | 39 | +Gversion -> Gversion 4.915266 |
| 40 | -O -> O 4.847296 | 40 | +O -> O 4.868094 |
| 41 | -Technique -> Technique 4.762002 | 41 | +Technique -> Technique 4.801722 |
| 42 | -Supp -> Supp 4.623411 | 42 | +Supp -> Supp 4.049658 |
| 43 | -Gtype -> Supp 1.707940 | 43 | +pH -> pH 2.237488 |
| 44 | -pH -> pH 1.691677 | 44 | +Substrain -> Gtype 1.851589 |
| 45 | -O -> Technique 1.635878 | 45 | +O -> Technique 1.624886 |
| 46 | -O -> Supp 1.559728 | 46 | +O -> Supp 1.553107 |
| 47 | -O -> Gtype 1.022656 | 47 | +Gtype -> Supp 1.547690 |
| 48 | -Substrain -> Gtype 0.995104 | 48 | +Air -> O 1.440675 |
| 49 | -O -> Anti 0.583807 | 49 | +O -> Gtype 1.359381 |
| 50 | -O -> Temp 0.467612 | 50 | +O -> Anti 0.638902 |
| 51 | -O -> Gversion 0.453034 | 51 | +Technique -> Air 0.616017 |
| 52 | -Technique -> Air 0.359052 | 52 | +Med -> O 0.445325 |
| 53 | -Air -> O 0.273813 | 53 | +O -> Temp 0.344531 |
| 54 | -O -> Med 0.235768 | 54 | +O -> Gversion 0.281572 |
| 55 | -Temp -> O 0.115990 | 55 | +Temp -> O 0.271329 |
| 56 | -Gtype -> Air 0.085028 | 56 | +O -> Med 0.092068 |
| 57 | -Med -> O 0.063901 | 57 | +Phase -> O 0.061858 |
| 58 | -Phase -> Air -0.013623 | 58 | +Gtype -> pH 0.046191 |
| 59 | -Strain -> O -0.015319 | 59 | +Anti -> O 0.018884 |
| 60 | -Air -> Phase -0.018991 | 60 | +Gtype -> Air 0.007955 |
| 61 | -O -> OD -0.096097 | 61 | +O -> OD -0.012110 |
| 62 | -Supp -> Air -0.152980 | 62 | +OD -> Med -0.056297 |
| 63 | -Supp -> Gtype -0.172882 | 63 | +Technique -> O -0.194680 |
| 64 | -O -> Phase -0.230569 | 64 | +Gtype -> Anti -0.249294 |
| 65 | -Gtype -> Anti -0.419137 | 65 | +Supp -> O -0.300903 |
| 66 | -Technique -> O -0.465846 | 66 | +Gtype -> O -0.529562 |
| 67 | -Air -> Supp -0.504152 | 67 | +Agit -> O -0.538328 |
| 68 | -OD -> Air -0.526665 | 68 | +OD -> O -0.737964 |
| 69 | -Gtype -> O -0.592689 | 69 | +Supp -> Med -0.744059 |
| 70 | -Supp -> O -0.617787 | 70 | +Gtype -> OD -0.843006 |
| 71 | -Technique -> OD -0.675268 | 71 | +O -> Air -0.935708 |
| 72 | -Phase -> O -0.805307 | 72 | +Substrain -> O -1.186882 |
| 73 | -OD -> Med -0.848210 | 73 | +Phase -> OD -1.409016 |
| 74 | -O -> Air -0.948079 | 74 | +Med -> Supp -2.610420 |
| 75 | -Supp -> Med -0.972720 | ||
| 76 | -Agit -> O -1.032994 | ||
| 77 | -OD -> O -1.111875 | ||
| 78 | -Gtype -> OD -1.121470 | ||
| 79 | -Air -> OD -1.294245 | ||
| 80 | -Substrain -> O -1.829982 | ||
| 81 | 75 | ||
| 82 | 76 | ||
| 83 | Top unlikely transitions: | 77 | Top unlikely transitions: |
| 84 | -Temp -> Temp 6.283086 | 78 | +Agit -> Agit 7.341089 |
| 85 | -Anti -> Anti 6.213232 | 79 | +OD -> OD 6.495857 |
| 86 | -Med -> Med 5.995903 | 80 | +Anti -> Anti 6.092589 |
| 87 | -Phase -> Phase 5.618998 | 81 | +Med -> Med 6.071567 |
| 88 | -Gtype -> Gtype 5.237438 | 82 | +Temp -> Temp 5.874329 |
| 89 | -Air -> Air 5.151876 | 83 | +Air -> Air 5.660813 |
| 90 | -Gversion -> Gversion 4.933604 | 84 | +Gtype -> Gtype 5.201158 |
| 91 | -O -> O 4.847296 | 85 | +Phase -> Phase 5.016982 |
| 92 | -Technique -> Technique 4.762002 | 86 | +Gversion -> Gversion 4.915266 |
| 93 | -Supp -> Supp 4.623411 | 87 | +O -> O 4.868094 |
| 94 | -Gtype -> Supp 1.707940 | 88 | +Technique -> Technique 4.801722 |
| 95 | -pH -> pH 1.691677 | 89 | +Supp -> Supp 4.049658 |
| 96 | -O -> Technique 1.635878 | 90 | +pH -> pH 2.237488 |
| 97 | -O -> Supp 1.559728 | 91 | +Substrain -> Gtype 1.851589 |
| 98 | -O -> Gtype 1.022656 | 92 | +O -> Technique 1.624886 |
| 99 | -Substrain -> Gtype 0.995104 | 93 | +O -> Supp 1.553107 |
| 100 | -O -> Anti 0.583807 | 94 | +Gtype -> Supp 1.547690 |
| 101 | -O -> Temp 0.467612 | 95 | +Air -> O 1.440675 |
| 102 | -O -> Gversion 0.453034 | 96 | +O -> Gtype 1.359381 |
| 103 | -Technique -> Air 0.359052 | 97 | +O -> Anti 0.638902 |
| 104 | -Air -> O 0.273813 | 98 | +Technique -> Air 0.616017 |
| 105 | -O -> Med 0.235768 | 99 | +Med -> O 0.445325 |
| 106 | -Temp -> O 0.115990 | 100 | +O -> Temp 0.344531 |
| 107 | -Gtype -> Air 0.085028 | 101 | +O -> Gversion 0.281572 |
| 108 | -Med -> O 0.063901 | 102 | +Temp -> O 0.271329 |
| 109 | -Phase -> Air -0.013623 | 103 | +O -> Med 0.092068 |
| 110 | -Strain -> O -0.015319 | 104 | +Phase -> O 0.061858 |
| 111 | -Air -> Phase -0.018991 | 105 | +Gtype -> pH 0.046191 |
| 112 | -O -> OD -0.096097 | 106 | +Anti -> O 0.018884 |
| 113 | -Supp -> Air -0.152980 | 107 | +Gtype -> Air 0.007955 |
| 114 | -Supp -> Gtype -0.172882 | 108 | +O -> OD -0.012110 |
| 115 | -O -> Phase -0.230569 | 109 | +OD -> Med -0.056297 |
| 116 | -Gtype -> Anti -0.419137 | 110 | +Technique -> O -0.194680 |
| 117 | -Technique -> O -0.465846 | 111 | +Gtype -> Anti -0.249294 |
| 118 | -Air -> Supp -0.504152 | 112 | +Supp -> O -0.300903 |
| 119 | -OD -> Air -0.526665 | 113 | +Gtype -> O -0.529562 |
| 120 | -Gtype -> O -0.592689 | 114 | +Agit -> O -0.538328 |
| 121 | -Supp -> O -0.617787 | 115 | +OD -> O -0.737964 |
| 122 | -Technique -> OD -0.675268 | 116 | +Supp -> Med -0.744059 |
| 123 | -Phase -> O -0.805307 | 117 | +Gtype -> OD -0.843006 |
| 124 | -OD -> Med -0.848210 | 118 | +O -> Air -0.935708 |
| 125 | -O -> Air -0.948079 | 119 | +Substrain -> O -1.186882 |
| 126 | -Supp -> Med -0.972720 | 120 | +Phase -> OD -1.409016 |
| 127 | -Agit -> O -1.032994 | 121 | +Med -> Supp -2.610420 |
| 128 | -OD -> O -1.111875 | ||
| 129 | -Gtype -> OD -1.121470 | ||
| 130 | -Air -> OD -1.294245 | ||
| 131 | -Substrain -> O -1.829982 | ||
| 132 | -Phase -> OD -2.186140 | ||
| 133 | -Med -> Supp -2.693786 | ||
| 134 | 122 | ||
| 135 | 123 | ||
| 136 | Top positive: | 124 | Top positive: |
| 137 | -12.023128 Supp b'lemma:Iron' | 125 | +14.131694 Supp b'lemma:Iron' |
| 138 | -11.905802 Phase b'lemma:stationary' | 126 | +10.668753 Phase b'lemma:stationary' |
| 139 | -10.567265 O b'lemma:_' | 127 | +9.969031 O b'lemma:_' |
| 140 | -10.151152 Air b'-1:lemma:ChIP-Seq' | 128 | +9.952965 Air b'lemma:anaerobic' |
| 141 | -10.090491 Air b'lemma:anaerobic' | 129 | +9.573463 Air b'lemma:aerobic' |
| 142 | -9.857898 Supp b'lemma:nitrate' | 130 | +9.006576 Supp b'lemma:nitrate' |
| 143 | -9.629833 Air b'lemma:aerobic' | 131 | +8.765618 Med b'lemma:MOPS' |
| 144 | -9.577578 Technique b'lemma:ChIP-exo' | 132 | +8.630149 Air b'-1:lemma:ChIP-Seq' |
| 145 | -9.036653 Phase b'lemma:mid-log' | 133 | +8.541642 O b'lemma:1' |
| 146 | -8.721963 Technique b'lemma:chipseq' | 134 | +8.103189 Technique b'lemma:ChIP-exo' |
| 147 | -8.698132 Med b'lemma:MOPS' | 135 | +8.056769 Strain b'lemma:k-12' |
| 148 | -8.668936 O b'lemma:1' | 136 | +7.747915 Phase b'lemma:mid-log' |
| 149 | -8.103505 O b'-1:lemma:ChIP-exo' | 137 | +7.630132 O b'lemma:Custom' |
| 150 | -7.864122 O b'lemma:rpob' | 138 | +7.452221 O b'-1:lemma:ChIP-exo' |
| 151 | -7.451473 Strain b'lemma:k-12' | 139 | +7.430108 O b'lemma:rpob' |
| 152 | -7.338543 O b'lemma:\xcf\x8332' | 140 | +7.256881 O b'-1:lemma:tag' |
| 153 | -7.198959 Air b'lemma:Aerobic' | 141 | +7.192950 O b'lemma:\xcf\x8332' |
| 154 | -7.109572 Gtype b'lemma:flag-tag' | 142 | +7.181976 Gversion b'-1:lemma:nc' |
| 155 | -7.109572 Gtype b'-1:lemma:c-terminal' | 143 | +6.998365 Gversion b'lemma:asm584v2' |
| 156 | -7.044978 Supp b'lemma:pq' | 144 | +6.702349 Technique b'lemma:chipseq' |
| 157 | -6.899921 O b'lemma:2' | 145 | +6.548039 Supp b'lemma:pq' |
| 158 | -6.897717 Gtype b'lemma:\xce\xb4cra' | 146 | +6.424562 O b'lemma:2' |
| 159 | -6.862453 O b'lemma:Custom' | 147 | +6.390388 Gtype b'lemma:\xce\xb4cra' |
| 160 | -6.848216 O b'-1:lemma:tag' | 148 | +6.379061 Air b'lemma:Aerobic' |
| 161 | -6.753546 Gversion b'lemma:asm584v2' | 149 | +6.327455 Substrain b'lemma:mg1655' |
| 162 | -6.751054 O b'lemma:b' | 150 | +6.271147 O b'lemma:3' |
| 163 | -6.726115 Technique b'lemma:ChIP-Seq' | 151 | +6.216371 O b'lemma:rep1' |
| 164 | -6.340232 O b'lemma:a' | 152 | +6.036273 Gtype b'lemma:type' |
| 165 | -6.324324 Med b'lemma:LB' | 153 | +5.982713 Gtype b'lemma:flag-tag' |
| 166 | -6.242158 O b'lemma:3' | 154 | +5.982713 Gtype b'-1:lemma:c-terminal' |
| 167 | -6.225748 O b'lemma:rep1' | 155 | +5.978106 O b'lemma:rep2' |
| 168 | -6.183760 Gversion b'-1:lemma:nc' | 156 | +5.928876 Supp b'+1:lemma:\xc2\xb5m' |
| 169 | -6.139494 O b'lemma:for' | 157 | +5.927978 O b'lemma:rep3' |
| 170 | -6.136397 O b'lemma:rep2' | 158 | +5.711298 OD b'lemma:od600' |
| 171 | -6.112373 O b'-1:lemma:Aerobic' | 159 | +5.700340 Gversion b'lemma:nc' |
| 172 | -6.052426 Gtype b'lemma:delta-arca' | 160 | +5.674933 Med b'lemma:LB' |
| 173 | -6.021691 Supp b'+1:lemma:\xc2\xb5m' | 161 | +5.635847 O b'lemma:b' |
| 174 | -6.014827 O b'lemma:rep3' | 162 | +5.491319 Supp b'lemma:rifampicin' |
| 175 | -5.998278 Gtype b'lemma:arca8myc' | 163 | +5.340763 OD b'lemma:od450' |
| 176 | -5.864622 Gtype b'lemma:fnr8myc' | 164 | +5.280658 Supp b'lemma:nh4cl' |
| 177 | -5.838163 Supp b'lemma:Fe' | 165 | +5.236869 O b'postag::' |
| 178 | -5.756687 Substrain b'lemma:mg1655' | 166 | +5.185016 O b'postag:IN' |
| 179 | -5.628610 O b'lemma:Cra' | 167 | +5.179346 O b'lemma:a' |
| 180 | -5.609519 Gtype b'+1:lemma:type' | 168 | +5.171656 O b'lemma:Cra' |
| 181 | -5.519720 Gtype b'lemma:type' | 169 | +5.156885 Supp b'lemma:glucose' |
| 182 | -5.487434 OD b'+1:lemma:stationary' | 170 | +5.045265 Gtype b'-1:lemma:\xe2\x88\x86' |
| 183 | -5.465596 Gversion b'lemma:nc' | 171 | +5.014858 Technique b'lemma:rna-seq' |
| 184 | -5.326426 Gtype b'lemma:delta-fnr' | 172 | +5.004572 Supp b'lemma:Fe' |
| 185 | -5.265842 Anti b'lemma:none' | 173 | +4.986002 Anti b'lemma:none' |
| 186 | -5.236408 Supp b'lemma:nh4cl' | 174 | +4.960380 OD b'+1:lemma:stationary' |
| 187 | -5.195640 O b'postag::' | 175 | +4.954569 Gtype b'lemma:wt' |
| 188 | -5.136998 Med b'lemma:lb' | 176 | +4.846980 O b'-1:lemma:0.3' |
| 189 | -5.129499 OD b'lemma:od450' | 177 | +4.808425 O b'-1:lemma:0.3-0.35' |
| 190 | -5.106518 Technique b'lemma:rna-seq' | 178 | +4.735890 Supp b'lemma:arginine' |
| 191 | -5.084990 O b'-1:lemma:anaerobic' | 179 | +4.724865 Gtype b'lemma:arca8myc' |
| 192 | -4.986922 Gtype b'lemma:wt' | 180 | +4.722199 O b'lemma:or' |
| 193 | -4.943309 Supp b'lemma:acetate' | 181 | +4.712517 Gtype b'lemma:delta-arca' |
| 194 | -4.879656 Gtype b'lemma:\xce\xb4fur' | 182 | +4.694670 Med b'lemma:lb' |
| 195 | -4.846650 Technique b'lemma:chip-seq' | 183 | +4.665780 Supp b'lemma:acetate' |
| 196 | -4.825495 O b'-1:lemma:0.3-0.35' | 184 | +4.592959 O b'-1:lemma:Aerobic' |
| 197 | -4.812352 Gtype b'-1:lemma:\xe2\x88\x86' | 185 | +4.582847 Supp b'lemma:dpd' |
| 198 | -4.769607 Supp b'lemma:glucose' | 186 | +4.579677 Anti b'lemma:seqa' |
| 199 | -4.759235 O b'-1:lemma:glucose' | 187 | +4.553469 Technique b'lemma:ChIP-Seq' |
| 200 | -4.740317 Supp b'lemma:arginine' | 188 | +4.524775 Gtype b'lemma:fnr8myc' |
| 201 | -4.738816 Supp b'lemma:rifampicin' | 189 | +4.512285 Gtype b'lemma:\xce\xb4fur' |
| 202 | -4.701038 Gversion b'lemma:chip-seq' | 190 | +4.453319 Supp b'lemma:fructose' |
| 203 | -4.693852 Gtype b'lemma:nsrr' | 191 | +4.385121 Vess b'lemma:flask' |
| 204 | -4.666819 O b'lemma:chip' | 192 | +4.385121 Vess b'-1:lemma:warm' |
| 205 | -4.666777 Air b'lemma:anerobically' | 193 | +4.362610 Gtype b'+1:lemma:type' |
| 206 | -4.665470 O b'lemma:or' | 194 | +4.241639 Technique b'lemma:chip-seq' |
| 207 | -4.635435 Temp b'-1:lemma:sample' | 195 | +4.222711 O b'lemma:-' |
| 208 | -4.605663 O b'lemma:.' | 196 | +4.122116 Technique b'+1:lemma:chip-exo' |
| 209 | -4.605663 O b'postag:.' | 197 | +4.119390 O b'lemma:.' |
| 210 | -4.574656 OD b'lemma:od600' | 198 | +4.119390 O b'postag:.' |
| 211 | -4.562061 O b'postag:IN' | 199 | +4.094206 Anti b'lemma:anti-myc' |
| 212 | -4.550601 Anti b'lemma:anti-myc' | 200 | +4.064301 Gtype b'+1:lemma:ph5' |
| 213 | -4.537492 Gtype b'+1:lemma:ph5' | 201 | +4.047658 O b'+1:lemma:od600' |
| 214 | -4.523129 O b'-1:lemma:type' | 202 | +4.033297 Temp b'-1:lemma:sample' |
| 215 | -4.511181 Strain b'+1:lemma:substr' | 203 | +4.027077 Temp b'-1:lemma:\xcf\x8332' |
| 216 | -4.493105 O b'+1:lemma:od600' | 204 | +3.988494 Supp b'lemma:no3' |
| 217 | -4.453065 Vess b'lemma:flask' | 205 | +3.987819 Gtype b'lemma:delta-fnr' |
| 218 | -4.453065 Vess b'-1:lemma:warm' | 206 | +3.965541 Technique b'lemma:rnaseq' |
| 219 | -4.444663 Supp b'lemma:no3' | 207 | +3.901419 Gtype b'lemma:wild-type' |
| 220 | -4.439485 Technique b'+1:lemma:chip-exo' | 208 | +3.858758 Gtype b'lemma:nsrr' |
| 221 | -4.416181 Gtype b'+1:lemma:flagtag' | 209 | +3.839972 O b'-1:lemma:anaerobic' |
| 222 | -4.415325 Supp b'-1:lemma:Cra' | 210 | +3.809743 O b'lemma:chip' |
| 223 | -4.396509 Supp b'-1:lemma:+' | 211 | +3.768275 Gtype b'-1:lemma:rpob' |
| 224 | -4.383866 Gtype b'-1:lemma:ptac' | 212 | +3.759291 O b'+1:postag:NNP' |
| 225 | -4.365928 O b'+1:lemma:sparging' | 213 | +3.753503 Technique b'-1:lemma:IP' |
| 226 | -4.354534 O b'+1:postag:RB' | 214 | +3.744094 Gtype b'-1:lemma:ptac' |
| 227 | -4.348783 Med b'+1:lemma:0.4' | 215 | +3.724227 O b'-1:lemma:type' |
| 228 | -4.341814 O b'-1:lemma:0.3' | 216 | +3.681895 Gtype b'+1:lemma:flagtag' |
| 229 | -4.336456 O b'+1:lemma:chip-seq' | 217 | +3.671930 Anti b'lemma:anti-rpos' |
| 230 | -4.269719 O b'lemma:with' | 218 | +3.640672 O b'postag:VBN' |
| 231 | -4.219193 Anti b'lemma:seqa' | 219 | +3.635571 Supp b'-1:lemma:+' |
| 232 | -4.194527 Supp b'+1:lemma:hour' | 220 | +3.615075 Gversion b'lemma:chip-seq' |
| 233 | -4.154345 Gtype b'lemma:\xe2\x88\x86' | 221 | +3.609485 Supp b'+1:lemma:1' |
| 234 | -4.105460 O b'lemma:-' | 222 | +3.603583 Gtype b'lemma:\xe2\x88\x86' |
| 235 | -4.045385 Temp b'-1:lemma:\xcf\x8332' | 223 | +3.583908 Gversion b'lemma:u00096' |
| 236 | -4.041775 Supp b'lemma:dpd' | 224 | +3.583908 Gversion b'+1:lemma:.2' |
| 237 | -4.018422 O b'lemma:oxyr' | 225 | +3.578924 Supp b'lemma:methanol' |
| 238 | -4.006587 Med b'+1:lemma:minimal' | 226 | +3.558572 O b'+1:postag:RB' |
| 239 | -3.994386 Gtype b'-1:lemma:rpob' | 227 | +3.531371 O b'lemma:CEL' |
| 240 | -3.943397 pH b'lemma:ph5' | 228 | +3.519433 Med b'+1:lemma:0.4' |
| 241 | -3.943397 pH b'+1:lemma:.5' | 229 | +3.514351 Supp b'lemma:iptg' |
| 242 | -3.925919 Supp b'lemma:fructose' | 230 | +3.492482 pH b'lemma:ph5' |
| 243 | -3.913579 Supp b'+1:lemma:1' | 231 | +3.492482 pH b'+1:lemma:.5' |
| 244 | -3.908385 O b'+1:postag:NNP' | 232 | +3.478227 O b'lemma:for' |
| 245 | -3.803339 O b'+1:lemma:o.d.' | 233 | +3.447690 O b'-1:lemma:glucose' |
| 246 | -3.758844 Technique b'lemma:rnaseq' | 234 | +3.435499 O b'lemma:oxyr' |
| 247 | -3.730482 Technique b'+1:lemma:rna-seq' | 235 | +3.435413 Anti b'+1:lemma:antibody' |
| 248 | -3.692271 Technique b'-1:lemma:IP' | 236 | +3.406205 Med b'lemma:m63' |
| 249 | -3.684645 O b'lemma:ompr' | 237 | +3.361046 O b'lemma:s' |
| 250 | -3.679500 O b'-1:lemma:lb' | 238 | +3.340573 Gtype b'lemma:\xce\xb4ompr' |
| 251 | -3.642465 Anti b'+1:lemma:antibody' | 239 | +3.334851 Supp b'-1:lemma:\xc2\xb5m' |
| 252 | -3.624491 O b'lemma:s' | 240 | +3.300340 O b'lemma:with' |
| 253 | -3.612874 O b'lemma:2-3' | 241 | +3.267870 Supp b'-1:lemma:Cra' |
| 254 | -3.606456 Gtype b'+1:lemma:pq' | 242 | +3.225692 Supp b'+1:lemma:2' |
| 255 | -3.584554 O b'lemma:soxs' | 243 | +3.198663 Supp b'lemma:nacl' |
| 256 | -3.584554 O b'lemma:soxr' | 244 | +3.197021 Air b'lemma:anaerobically' |
| 257 | -3.545385 O b'lemma:CEL' | 245 | +3.140248 Strain b'+1:lemma:substr' |
| 258 | -3.527179 Gversion b'lemma:u00096' | 246 | +3.081035 O b'lemma:ompr' |
| 259 | -3.527179 Gversion b'+1:lemma:.2' | 247 | +3.072833 Supp b'+1:lemma:hour' |
| 260 | -3.525538 Technique b'-1:lemma:chip-exo' | 248 | +3.032040 Supp b'+1:lemma:_' |
| 261 | -3.525111 Anti b'lemma:anti-rpos' | 249 | +3.019379 Gtype b'+1:lemma:with' |
| 262 | -3.517186 O b'postag:VBN' | 250 | +3.003302 Gtype b'lemma:pk4854' |
| 263 | -3.489661 Supp b'lemma:Leu' | 251 | +2.949430 Gtype b'+1:lemma:pq' |
| 264 | -3.480284 Supp b'lemma:iptg' | 252 | +2.942687 Supp b'lemma:Leu' |
| 265 | -3.469423 Temp b'-1:lemma:43' | 253 | +2.920502 Med b'-1:lemma:ml' |
| 266 | -3.467975 Gtype b'lemma:pk4854' | 254 | +2.911185 Temp b'-1:lemma:37' |
| 267 | -3.443002 OD b'-1:lemma:about' | 255 | +2.907442 O b'+1:lemma:chip-seq' |
| 268 | -3.435842 Gtype b'lemma:\xce\xb4ompr' | 256 | +2.901178 Gversion b'lemma:.2' |
| 269 | -3.435548 Med b'+1:lemma:contain' | 257 | +2.901178 Gversion b'-1:lemma:u00096' |
| 270 | -3.393209 Med b'lemma:m63' | 258 | +2.895104 Med b'+1:lemma:2.0' |
| 271 | -3.390757 Gversion b'lemma:.2' | 259 | +2.847883 Technique b'-1:lemma:chip-exo' |
| 272 | -3.390757 Gversion b'-1:lemma:u00096' | 260 | +2.841679 Air b'lemma:anerobically' |
| 273 | -3.365623 Gtype b'lemma:wild-type' | 261 | +2.787857 OD b'-1:lemma:about' |
| 274 | -3.365137 Supp b'+1:lemma:_' | 262 | +2.786869 O b'lemma:at' |
| 275 | -3.285213 O b'-1:lemma:\xc2\xb0c' | 263 | +2.783750 Supp b'lemma:20' |
| 276 | -3.270674 Air b'lemma:anaerobically' | 264 | +2.722669 pH b'lemma:.5' |
| 277 | -3.263042 Gversion b'lemma:000913' | 265 | +2.722669 pH b'-1:lemma:ph5' |
| 278 | -3.243898 Gtype b'lemma:\xce\xb4soxs' | 266 | +2.714038 Air b'-1:lemma:-' |
| 279 | -3.241988 O b'lemma:at' | 267 | +2.712647 Technique b'+1:lemma:rna-seq' |
| 280 | -3.241694 Supp b'lemma:Adenine' | 268 | +2.694003 O b'postag:DT' |
| 281 | -3.235960 Supp b'+1:lemma:2' | 269 | +2.684568 O b'lemma:soxs' |
| 282 | -3.220154 Substrain b'+1:lemma:phtpg' | 270 | +2.684568 O b'lemma:soxr' |
| 283 | -3.168232 O b'lemma:chip-arca' | 271 | +2.665698 Med b'+1:lemma:minimal' |
| 284 | -3.124706 Med b'-1:lemma:ml' | 272 | +2.649710 O b'+1:lemma:o.d.' |
| 285 | -3.119275 Gtype b'lemma:deltaseqa' | 273 | +2.645351 O b'+1:lemma:sparging' |
| 286 | -3.119275 Gtype b'-1:lemma:old' | 274 | +2.643627 Gtype b'lemma:\xce\xb4soxs' |
| 287 | -3.105855 Phase b'-1:lemma:until' | 275 | +2.641818 Med b'lemma:media' |
| 288 | -3.104880 Supp b'lemma:nacl' | 276 | +2.594213 Gtype b'-1:lemma:phtpg' |
| 289 | -3.063586 Phase b'+1:lemma:for' | 277 | +2.579796 Gtype b'-1:lemma:nsrr' |
| 290 | -3.062511 O b'lemma:argr' | 278 | +2.565558 O b'lemma:condition' |
| 291 | -3.057692 Temp b'-1:lemma:37' | 279 | +2.564623 Gtype b'lemma:deltaseqa' |
| 292 | -3.030255 O b'lemma:purr' | 280 | +2.564623 Gtype b'-1:lemma:old' |
| 293 | -3.006731 O b'-1:lemma:media' | 281 | +2.553746 Substrain b'+1:lemma:phtpg' |
| 294 | -2.937639 O b'+1:lemma:pq' | 282 | +2.552012 O b'postag:VBG' |
| 295 | -2.930516 Supp b'lemma:methanol' | 283 | +2.519921 O b'+1:lemma:pq' |
| 296 | -2.918452 Temp b'+1:lemma:\xc2\xb0c' | 284 | +2.506331 O b'-1:lemma:lb' |
| 297 | -2.915173 Gtype b'lemma:WT' | 285 | +2.497453 OD b'lemma:0.3' |
| 298 | -2.909714 OD b'-1:lemma:~' | 286 | +2.462504 O b'+1:lemma:acetate' |
| 299 | -2.900692 Med b'lemma:L' | 287 | +2.438317 O b'-1:lemma:stpa' |
| 300 | -2.900692 Med b'+1:lemma:broth' | 288 | +2.438025 Supp b'+1:lemma:iptg' |
| 301 | -2.899989 Gtype b'lemma:ptac' | 289 | +2.427624 Supp b'+1:lemma:and' |
| 302 | -2.898928 O b'+1:lemma:rifampicin' | 290 | +2.425953 Med b'+1:lemma:g/l' |
| 303 | -2.878667 pH b'lemma:.5' | 291 | +2.424623 Supp b'lemma:Adenine' |
| 304 | -2.878667 pH b'-1:lemma:ph5' | 292 | +2.400881 Technique b'-1:lemma:input' |
| 305 | -2.877293 O b'postag:DT' | 293 | +2.375136 O b'-1:lemma:media' |
| 306 | -2.875342 O b'+1:lemma:mid-log' | 294 | +2.359950 Supp b'lemma:0.2' |
| 307 | -2.845729 Gtype b'+1:lemma:with' | 295 | +2.343865 Med b'+1:lemma:supplement' |
| 308 | -2.833330 Temp b'lemma:\xc2\xb0c' | 296 | +2.341893 O b'-1:lemma:l1' |
| 309 | -2.821959 Supp b'-1:lemma:\xc2\xb5m' | 297 | +2.334122 O b'lemma:culture' |
| 310 | -2.778935 O b'-1:lemma:dpd' | 298 | +2.293428 Temp b'lemma:\xc2\xb0c' |
| 311 | -2.716093 Supp b'+1:lemma:iptg' | 299 | +2.283387 Gversion b'lemma:000913' |
| 312 | -2.714614 Supp b'+1:lemma:Deficient' | 300 | +2.277001 Temp b'lemma:37' |
| 313 | -2.696864 Gtype b'-1:lemma:phtpg' | 301 | +2.270319 Temp b'lemma:43' |
| 314 | -2.687105 Air b'+1:lemma:at' | 302 | +2.267164 Gversion b'postag:CD' |
| 315 | -2.676418 O b'lemma:affyexp' | 303 | +2.265729 Supp b'lemma:0.1' |
| 316 | -2.676025 Gtype b'lemma:\xce\xb4soxr' | 304 | +2.263323 Gtype b'-1:lemma:vector' |
| 317 | -2.663692 Gtype b'lemma:\xce\xb4oxyr' | 305 | +2.252869 O b'lemma:chip-arca' |
| 318 | -2.658854 Med b'+1:lemma:2.0' | 306 | +2.246589 O b'-1:lemma:dpd' |
| 319 | -2.651224 Gtype b'lemma:dfnr' | 307 | +2.245090 Gtype b'lemma:ptac' |
| 320 | -2.649576 O b'-1:lemma:l1' | 308 | +2.239134 Med b'lemma:L' |
| 321 | -2.620669 Air b'postag:RB' | 309 | +2.239134 Med b'+1:lemma:broth' |
| 322 | -2.577561 O b'lemma:Lrp' | 310 | +2.238728 Gtype b'+1:lemma:_' |
| 323 | -2.570022 Med b'+1:lemma:g/l' | 311 | +2.225573 Temp b'-1:lemma:43' |
| 324 | -2.524794 Technique b'-1:lemma:input' | 312 | +2.222881 O b'+1:postag:VBP' |
| 325 | -2.523784 O b'-1:lemma:min' | 313 | +2.192564 OD b'-1:lemma:~' |
| 326 | -2.517414 O b'+1:postag:VBP' | 314 | +2.185774 Air b'postag:RB' |
| 327 | -2.471571 O b'+1:lemma:acetate' | 315 | +2.184138 Phase b'-1:lemma:mid-log' |
| 328 | -2.464652 O b'postag:VBG' | 316 | +2.182400 Phase b'-1:lemma:until' |
| 329 | -2.464091 Air b'-1:lemma:phase' | 317 | +2.180459 Med b'lemma:broth' |
| 330 | -2.457715 OD b'lemma:0.3' | 318 | +2.180459 Med b'-1:lemma:L' |
| 331 | -2.425241 Gtype b'lemma:soxs-8myc' | 319 | +2.178459 Gtype b'lemma:\xce\xb4oxyr' |
| 332 | -2.425241 Gtype b'lemma:soxr-8myc' | 320 | +2.172998 Med b'lemma:glucose' |
| 333 | -2.406446 O b'+1:lemma:0.2' | 321 | +2.081891 Supp b'-1:lemma:with' |
| 334 | -2.380330 Temp b'lemma:37' | 322 | +2.081163 O b'lemma:Lrp' |
| 335 | -2.356535 Temp b'lemma:43' | 323 | +2.056042 Supp b'lemma:of' |
| 336 | -2.340361 Supp b'lemma:leucine' | 324 | +2.054403 O b'+1:lemma:rifampicin' |
| 337 | 325 | ||
| 338 | 326 | ||
| 339 | Top negative: | 327 | Top negative: |
| 340 | -0.000037 OD b'+1:lemma:\xce\xb4soxr' | 328 | +0.004444 OD b'+1:lemma:~' |
| 341 | -0.000031 Technique b'+1:lemma:Anaerobic' | 329 | +0.002512 O b'+1:lemma:media' |
| 342 | -0.000028 OD b'-1:lemma:phase' | 330 | +0.002348 Technique b'-1:postag:NNP' |
| 343 | -0.000026 Agit b'-1:postag:VBG' | 331 | +0.001954 Anti b'-1:lemma:monoclonal' |
| 344 | -0.000015 Agit b'+1:postag:IN' | 332 | +0.001373 Supp b'lemma:250' |
| 345 | -0.000015 O b'lemma:input' | 333 | +0.001330 O b'+1:lemma:n2' |
| 346 | -0.000014 OD b'+1:postag:RB' | 334 | +0.001020 OD b'-1:lemma:cell' |
| 347 | -0.000012 O b'-1:lemma:Fur' | 335 | +0.000979 Air b'lemma:70' |
| 348 | -0.000010 Supp b'+1:lemma:feso4' | 336 | +0.000779 Gtype b'-1:lemma:of' |
| 349 | -0.000010 O b'+1:lemma:ChIP-Seq' | 337 | +0.000613 Agit b'+1:lemma:at' |
| 350 | -0.000005 O b'-1:lemma:250' | 338 | +0.000612 OD b'-1:postag:VBN' |
| 351 | -0.000004 OD b'lemma::' | 339 | +0.000570 Anti b'-1:postag:NN' |
| 352 | -0.000004 Agit b'postag:VBG' | 340 | +0.000562 OD b'+1:postag:VBN' |
| 353 | -0.000003 OD b'postag::' | 341 | +0.000343 OD b'postag:VBN' |
| 354 | -0.000001 Temp b'-1:postag:NNS' | 342 | +0.000250 Supp b'lemma:feso4' |
| 355 | --0.000008 O b'lemma:mg1655' | 343 | +0.000211 Supp b'lemma:um' |
| 356 | --0.000009 O b'-1:lemma:sample' | 344 | +0.000200 O b'lemma:harvest' |
| 357 | --0.000026 O b'-1:lemma:e.' | 345 | +0.000172 Supp b'-1:lemma:250' |
| 358 | --0.000069 O b'-1:lemma:1' | 346 | +0.000169 O b'+1:lemma:harvest' |
| 359 | --0.000210 Gtype b'-1:postag:NNP' | 347 | +0.000161 O b'+1:lemma:minute' |
| 360 | --0.000267 O b'+1:lemma:co2' | 348 | +0.000152 O b'+1:lemma:rna' |
| 361 | --0.000316 Gtype b'+1:lemma:2' | 349 | +0.000142 Gtype b'lemma:input' |
| 362 | --0.000469 O b'+1:lemma:rep1' | 350 | +0.000138 Gtype b'lemma:mutant' |
| 363 | --0.001404 O b'-1:lemma:at' | 351 | +0.000125 Gtype b'lemma:-rcb-' |
| 364 | --0.002564 Med b'+1:postag:CC' | 352 | +0.000110 Gtype b'postag::' |
| 365 | --0.002647 OD b'lemma:~' | 353 | +0.000080 Phase b'-1:postag:IN' |
| 366 | --0.002825 O b'lemma:grow' | 354 | +0.000061 Phase b'+1:lemma:aerobically' |
| 367 | --0.003590 O b'lemma:anaerobic' | 355 | +0.000056 OD b'postag:IN' |
| 368 | --0.004607 O b'+1:lemma:dissolve' | 356 | +0.000055 Phase b'+1:postag:RB' |
| 369 | --0.005282 Supp b'+1:lemma:of' | 357 | +0.000045 Supp b'lemma:2' |
| 370 | --0.008060 OD b'+1:postag:-LRB-' | 358 | +0.000036 OD b'+1:lemma:mid-log' |
| 371 | --0.008731 OD b'+1:postag:-RRB-' | 359 | +0.000020 O b'-1:lemma:m9' |
| 372 | --0.009571 O b'-1:lemma:30' | 360 | +0.000015 Supp b'lemma:\xc2\xb5m' |
| 373 | --0.010095 O b'lemma:m63' | 361 | +0.000013 Supp b'-1:lemma:10' |
| 374 | --0.010149 Phase b'lemma:pahse' | 362 | +0.000012 O b'+1:postag:SYM' |
| 375 | --0.010429 Gtype b'+1:lemma:-' | 363 | +0.000012 Med b'-1:lemma:g/l' |
| 376 | --0.012754 Supp b'lemma:mm' | 364 | +0.000011 O b'+1:lemma:min' |
| 377 | --0.013827 OD b'+1:lemma:~' | 365 | +-0.000010 O b'-1:lemma:g/l' |
| 378 | --0.014292 O b'+1:lemma:grow' | 366 | +-0.000013 O b'lemma:cell' |
| 379 | --0.015852 OD b'+1:postag:CD' | 367 | +-0.000022 O b'-1:lemma:1' |
| 380 | --0.016820 O b'lemma:25' | 368 | +-0.000023 O b'+1:lemma:mm' |
| 381 | --0.017788 OD b'+1:lemma:-rrb-' | 369 | +-0.000025 O b'+1:lemma:medium' |
| 382 | --0.019574 O b'+1:lemma:~' | 370 | +-0.000054 Gtype b'+1:lemma:2' |
| 383 | --0.025256 O b'+1:lemma:300' | 371 | +-0.000084 O b'lemma:10' |
| 384 | --0.026121 O b'+1:lemma:0.4' | 372 | +-0.000087 OD b'-1:postag:DT' |
| 385 | --0.028318 O b'lemma:o2' | 373 | +-0.000166 Gtype b'postag:CD' |
| 386 | --0.029040 Anti b'+1:lemma:anti-fur' | 374 | +-0.000166 O b'+1:lemma:rep1' |
| 387 | --0.030350 OD b'+1:lemma:0.4' | 375 | +-0.000189 O b'-1:lemma:um' |
| 388 | --0.030931 Med b'+1:postag:NNS' | 376 | +-0.000189 O b'+1:lemma:paraquat' |
| 389 | --0.033897 O b'-1:lemma:mm' | 377 | +-0.000301 O b'lemma:m63' |
| 390 | --0.035604 O b'+1:lemma:o2' | 378 | +-0.000348 OD b'+1:postag:NNS' |
| 391 | --0.035916 O b'-1:lemma:the' | 379 | +-0.000501 OD b'+1:postag:-LRB-' |
| 392 | --0.035990 O b'+1:lemma:arginine' | 380 | +-0.001014 O b'lemma:lb' |
| 393 | --0.036415 Air b'-1:lemma:anaerobically' | 381 | +-0.001025 O b'+1:lemma:300' |
| 394 | --0.040153 Air b'-1:postag:CC' | 382 | +-0.001085 O b'+1:lemma:minimal' |
| 395 | --0.041154 O b'+1:lemma:antibody' | 383 | +-0.001319 O b'+1:lemma:phase' |
| 396 | --0.041832 Anti b'-1:postag:NN' | 384 | +-0.001982 O b'+1:lemma:fnr' |
| 397 | --0.045053 OD b'postag:IN' | 385 | +-0.002311 O b'+1:lemma:grow' |
| 398 | --0.047572 Gtype b'+1:postag:IN' | 386 | +-0.003075 O b'+1:lemma:until' |
| 399 | --0.053112 Supp b'+1:lemma:dpd' | 387 | +-0.003743 O b'+1:lemma:0.3' |
| 400 | --0.053329 O b'-1:lemma:minimal' | 388 | +-0.004269 O b'lemma:grow' |
| 401 | --0.060576 O b'-1:postag:IN' | 389 | +-0.004318 O b'+1:lemma:0.4' |
| 402 | --0.065925 O b'lemma:medium' | 390 | +-0.005882 O b'+1:lemma:25' |
| 403 | --0.066353 O b'+1:lemma:25' | 391 | +-0.005961 O b'-1:lemma:,' |
| 404 | --0.076464 Med b'-1:postag:NN' | 392 | +-0.005961 O b'-1:postag:,' |
| 405 | --0.078443 Supp b'-1:postag:NN' | 393 | +-0.006723 O b'-1:lemma:n2' |
| 406 | --0.078865 Strain b'+1:postag:NN' | 394 | +-0.006973 Air b'-1:lemma:and' |
| 407 | --0.091232 Air b'postag:CD' | 395 | +-0.007306 Supp b'-1:lemma:for' |
| 408 | --0.091763 O b'lemma:30' | 396 | +-0.007868 O b'lemma:5' |
| 409 | --0.095656 O b'lemma:lb' | 397 | +-0.011921 O b'lemma:95' |
| 410 | --0.098575 O b'+1:lemma:shake' | 398 | +-0.012399 O b'-1:lemma:95' |
| 411 | --0.100589 Anti b'+1:postag:JJ' | 399 | +-0.015125 O b'+1:lemma:antibody' |
| 412 | --0.109250 Supp b'+1:postag:IN' | 400 | +-0.018199 O b'lemma:25' |
| 413 | --0.113108 Agit b'postag:NN' | 401 | +-0.020534 OD b'-1:lemma:a' |
| 414 | --0.113815 O b'-1:lemma:o2' | 402 | +-0.021998 O b'-1:lemma:25' |
| 415 | --0.117553 O b'+1:lemma:5' | 403 | +-0.024040 OD b'+1:lemma:and' |
| 416 | --0.121789 Supp b'lemma:and' | 404 | +-0.027503 O b'-1:lemma:70' |
| 417 | --0.122865 Gtype b'-1:postag:NN' | 405 | +-0.030355 Air b'postag:CC' |
| 418 | --0.129126 O b'lemma:glucose' | 406 | +-0.031431 O b'-1:postag:VBN' |
| 419 | --0.130690 O b'-1:lemma:of' | 407 | +-0.034243 OD b'+1:postag:CD' |
| 420 | --0.132633 O b'+1:lemma:phase' | 408 | +-0.035178 O b'-1:lemma:mm' |
| 421 | --0.134059 OD b'+1:postag:CC' | 409 | +-0.037036 Air b'-1:lemma:aerobically' |
| 422 | --0.141756 Air b'-1:lemma:95' | 410 | +-0.044409 O b'-1:lemma:-lrb-' |
| 423 | --0.143614 O b'-1:lemma:-lrb-' | 411 | +-0.045497 O b'-1:lemma:\xe2\x88\x86' |
| 424 | --0.149012 O b'+1:lemma:\xc2\xb0c' | 412 | +-0.053514 O b'+1:lemma:o2' |
| 425 | --0.155150 O b'+1:postag:NNS' | 413 | +-0.057056 pH b'postag:NN' |
| 426 | --0.160903 O b'+1:lemma:-rrb-' | 414 | +-0.059321 O b'lemma:e.' |
| 427 | --0.161363 O b'lemma:n2' | 415 | +-0.060480 O b'+1:lemma:arginine' |
| 428 | --0.162536 O b'postag:VBP' | 416 | +-0.064459 O b'-1:lemma:0.1' |
| 429 | --0.168298 O b'-1:lemma:n2' | 417 | +-0.065478 O b'lemma:o2' |
| 430 | --0.171249 O b'-1:postag:VBN' | 418 | +-0.086735 O b'-1:postag:IN' |
| 431 | --0.176512 O b'lemma:aerobically' | 419 | +-0.088151 Supp b'postag:CC' |
| 432 | --0.186672 O b'lemma:co2' | 420 | +-0.090770 O b'+1:lemma:5' |
| 433 | --0.186766 O b'+1:lemma:_' | 421 | +-0.090829 Med b'+1:postag:NNS' |
| 434 | --0.196943 Strain b'postag:NN' | 422 | +-0.097005 O b'-1:lemma:e.' |
| 435 | --0.201827 O b'+1:lemma:mm' | 423 | +-0.102356 O b'-1:lemma:from' |
| 436 | --0.206537 O b'-1:postag:-LRB-' | 424 | +-0.105701 O b'-1:lemma:rifampicin' |
| 437 | --0.214121 Supp b'postag:CC' | 425 | +-0.107290 Supp b'lemma:and' |
| 438 | --0.215072 O b'lemma:e.' | 426 | +-0.111321 Gtype b'+1:postag:IN' |
| 439 | --0.235225 O b'-1:lemma:0.1' | 427 | +-0.122840 O b'+1:lemma:-rrb-' |
| 440 | --0.261548 O b'lemma:\xce\xb4fur' | 428 | +-0.131840 O b'-1:lemma:mid-log' |
| 441 | --0.264532 O b'-1:lemma:rifampicin' | 429 | +-0.136836 OD b'+1:postag:CC' |
| 442 | --0.272491 O b'-1:lemma:0.2' | 430 | +-0.145723 O b'-1:postag:-LRB-' |
| 443 | --0.284244 O b'-1:lemma:from' | 431 | +-0.146980 O b'-1:lemma:o2' |
| 444 | --0.285360 O b'-1:lemma:until' | 432 | +-0.156899 O b'-1:lemma:of' |
| 445 | --0.286318 Med b'postag:CD' | 433 | +-0.167701 Phase b'-1:lemma:at' |
| 446 | --0.287177 Air b'-1:lemma:or' | 434 | +-0.175342 Anti b'+1:postag:JJ' |
| 447 | --0.304066 O b'lemma:150' | 435 | +-0.183517 OD b'+1:postag:NN' |
| 448 | --0.304066 O b'+1:lemma:mg/ml' | 436 | +-0.190021 O b'-1:lemma:30' |
| 449 | --0.304896 O b'+1:lemma:or' | 437 | +-0.208806 Temp b'postag:NN' |
| 450 | --0.309102 O b'+1:postag:-RRB-' | 438 | +-0.208824 Temp b'postag:JJ' |
| 451 | --0.331291 Supp b'-1:postag:NNP' | 439 | +-0.215629 O b'lemma:co2' |
| 452 | --0.339237 Med b'+1:postag:IN' | 440 | +-0.221546 Air b'-1:lemma:or' |
| 453 | --0.352184 O b'postag:RB' | 441 | +-0.241850 O b'lemma:\xe2\x88\x86' |
| 454 | --0.361577 Gtype b'postag:CD' | 442 | +-0.242801 Technique b'-1:lemma::' |
| 455 | --0.367320 O b'-1:lemma:ml' | 443 | +-0.243926 Supp b'+1:postag:VBN' |
| 456 | --0.377900 O b'lemma:dissolve' | 444 | +-0.244243 O b'lemma:30' |
| 457 | --0.378236 O b'+1:lemma:.' | 445 | +-0.246547 Med b'-1:postag:IN' |
| 458 | --0.378236 O b'+1:postag:.' | 446 | +-0.268422 O b'-1:lemma:ml' |
| 459 | --0.378886 O b'+1:lemma:until' | 447 | +-0.274527 Med b'+1:postag:IN' |
| 460 | --0.380197 O b'lemma:od600' | 448 | +-0.289790 O b'+1:postag:IN' |
| 461 | --0.380556 O b'-1:lemma:od600' | 449 | +-0.291195 O b'+1:postag:-RRB-' |
| 462 | --0.388687 O b'lemma:phase' | 450 | +-0.293140 Med b'+1:postag:NN' |
| 463 | --0.393310 O b'+1:lemma:0.3' | 451 | +-0.299342 O b'lemma:phase' |
| 464 | --0.399102 O b'+1:postag:IN' | 452 | +-0.302946 O b'+1:postag:NNS' |
| 465 | --0.399168 Temp b'postag:JJ' | 453 | +-0.306118 O b'+1:lemma:.' |
| 466 | --0.401235 O b'-1:lemma:~' | 454 | +-0.306118 O b'+1:postag:.' |
| 467 | --0.410916 O b'-1:lemma:rpob' | 455 | +-0.308929 Gtype b'-1:postag:NN' |
| 468 | --0.431448 OD b'lemma:-lrb-' | 456 | +-0.317569 Air b'-1:postag:CC' |
| 469 | --0.434432 Technique b'-1:lemma::' | 457 | +-0.323438 Phase b'-1:postag:NN' |
| 470 | --0.444259 Supp b'+1:postag:VBN' | 458 | +-0.327100 O b'-1:lemma:cra' |
| 471 | --0.459196 Technique b'-1:postag::' | 459 | +-0.329119 Med b'-1:postag:NN' |
| 472 | --0.459291 OD b'+1:lemma:and' | 460 | +-0.343139 O b'+1:lemma:+' |
| 473 | --0.470209 O b'lemma:\xe2\x88\x86' | 461 | +-0.359236 O b'+1:lemma:%' |
| 474 | --0.486291 O b'+1:lemma:%' | 462 | +-0.360527 Air b'postag:CD' |
| 475 | --0.518507 O b'-1:lemma:IP' | 463 | +-0.364000 O b'lemma:0.3' |
| 476 | --0.519707 Phase b'-1:lemma:at' | 464 | +-0.365750 O b'lemma:aerobically' |
| 477 | --0.526678 O b'lemma:dpd' | 465 | +-0.415947 O b'-1:lemma:sample' |
| 478 | --0.534234 Air b'-1:postag:JJ' | 466 | +-0.429967 O b'-1:lemma:od600' |
| 479 | --0.540044 pH b'postag:NN' | 467 | +-0.455391 O b'lemma:dissolve' |
| 480 | --0.542011 O b'+1:lemma:c' | 468 | +-0.463970 O b'postag:RB' |
| 481 | --0.553114 O b'-1:lemma:grow' | 469 | +-0.467344 Technique b'-1:postag::' |
| 482 | --0.571198 O b'lemma:0.3' | 470 | +-0.494024 Temp b'+1:lemma:to' |
| 483 | --0.573213 Med b'+1:postag:NN' | 471 | +-0.494024 Temp b'+1:postag:TO' |
| 484 | --0.592187 Temp b'postag:NN' | 472 | +-0.508881 O b'-1:lemma:rpob' |
| 485 | --0.596509 O b'-1:lemma:mid-log' | 473 | +-0.523986 O b'lemma:media' |
| 486 | --0.616998 O b'lemma:media' | 474 | +-0.535749 Air b'-1:postag:JJ' |
| 487 | --0.625245 O b'+1:lemma:cell' | 475 | +-0.551274 O b'lemma:anaerobically' |
| 488 | --0.625847 O b'-1:lemma:cra' | 476 | +-0.552430 Phase b'+1:postag:NN' |
| 489 | --0.668364 Gversion b'+1:postag:NN' | 477 | +-0.564731 O b'lemma:20' |
| 490 | --0.670411 O b'+1:lemma:+' | 478 | +-0.567109 O b'-1:lemma:0.2' |
| 491 | --0.670829 O b'lemma:anaerobically' | 479 | +-0.605741 O b'-1:lemma:grow' |
| 492 | --0.693082 Supp b'+1:lemma:rifampicin' | 480 | +-0.649536 O b'lemma:0.2' |
| 493 | --0.727079 O b'-1:lemma:dissolve' | 481 | +-0.661223 Supp b'+1:lemma:rifampicin' |
| 494 | --0.727079 O b'+1:lemma:methanol' | 482 | +-0.663522 O b'-1:lemma:37' |
| 495 | --0.738408 O b'+1:lemma:fecl2' | 483 | +-0.665065 O b'+1:lemma:fecl2' |
| 496 | --0.792874 O b'lemma:20' | 484 | +-0.666478 Phase b'-1:postag:JJ' |
| 497 | --0.848889 OD b'+1:postag:NN' | 485 | +-0.681434 O b'lemma:od600' |
| 498 | --0.848997 Supp b'+1:lemma:acetate' | 486 | +-0.706506 Temp b'-1:lemma:\xc2\xb0c' |
| 499 | --0.861900 Med b'-1:postag:IN' | 487 | +-0.709880 O b'+1:lemma:\xc2\xb0c' |
| 500 | --0.865385 O b'lemma:0.2' | 488 | +-0.721412 O b'-1:lemma:~' |
| 501 | --0.892622 Temp b'+1:lemma:to' | 489 | +-0.727136 Supp b'+1:lemma:acetate' |
| 502 | --0.892622 Temp b'+1:postag:TO' | 490 | +-0.743650 O b'lemma:of' |
| 503 | --0.937071 O b'+1:lemma:supplement' | 491 | +-0.759091 O b'lemma:37' |
| 504 | --0.938360 O b'-1:lemma:co2' | 492 | +-0.796823 OD b'lemma:-lrb-' |
| 505 | --0.960239 O b'lemma:2h' | 493 | +-0.837874 O b'-1:postag:VBG' |
| 506 | --0.960239 O b'-1:lemma:additional' | 494 | +-0.842130 O b'+1:lemma:supplement' |
| 507 | --0.973815 O b'lemma:of' | 495 | +-0.871087 O b'+1:postag:VBG' |
| 508 | --1.034828 O b'+1:postag:VBG' | 496 | +-0.919085 O b'-1:postag::' |
| 509 | --1.035428 O b'+1:lemma:g/l' | 497 | +-0.932643 O b'lemma:0.1' |
| 510 | --1.050289 O b'lemma:mid-log' | 498 | +-0.946063 O b'+1:lemma:cell' |
| 511 | --1.059894 O b'-1:postag:VBG' | 499 | +-0.951793 O b'lemma:mid-log' |
| 512 | --1.066538 O b'lemma:0.1' | 500 | +-0.985731 OD b'postag:-LRB-' |
| 513 | --1.076597 O b'-1:postag::' | 501 | +-1.000812 O b'-1:lemma:dissolve' |
| 514 | --1.106329 Phase b'+1:postag:NN' | 502 | +-1.000812 O b'+1:lemma:methanol' |
| 515 | --1.148398 Phase b'-1:postag:NN' | 503 | +-1.091362 Supp b'-1:lemma:%' |
| 516 | --1.172180 Air b'+1:postag:JJ' | 504 | +-1.092178 O b'lemma:rifampicin' |
| 517 | --1.201626 O b'lemma:37' | 505 | +-1.111288 O b'-1:lemma:IP' |
| 518 | --1.206293 OD b'postag:-LRB-' | 506 | +-1.125339 O b'lemma:fecl2' |
| 519 | --1.252513 O b'-1:lemma:37' | 507 | +-1.126515 O b'-1:lemma:co2' |
| 520 | --1.399946 O b'+1:lemma:at' | 508 | +-1.133055 O b'lemma:2h' |
| 521 | --1.439837 O b'lemma:wt' | 509 | +-1.133055 O b'-1:lemma:additional' |
| 522 | --1.474885 O b'-1:lemma:nsrr' | 510 | +-1.239727 O b'+1:lemma:g/l' |
| 523 | --1.521797 O b'lemma:fecl2' | 511 | +-1.309169 Air b'+1:postag:JJ' |
| 524 | --1.544569 Anti b'postag:NNP' | 512 | +-1.364763 O b'+1:lemma:at' |
| 525 | --1.548585 O b'+1:lemma:hour' | 513 | +-1.408904 Anti b'postag:NNP' |
| 526 | --1.566877 Supp b'-1:lemma:%' | 514 | +-1.492174 O b'lemma:wt' |
| 527 | --1.597712 O b'+1:lemma:in' | 515 | +-1.496119 O b'-1:lemma:nsrr' |
| 528 | --1.629113 O b'-1:lemma:ompr' | 516 | +-1.510760 O b'lemma:methanol' |
| 529 | --1.773656 Air b'postag:NN' | 517 | +-1.588382 O b'+1:lemma:hour' |
| 530 | --1.898147 Phase b'-1:postag:JJ' | 518 | +-1.669770 Air b'postag:NN' |
| 531 | --2.222432 O b'lemma:rifampicin' | 519 | +-1.787096 O b'+1:lemma:in' |
| 532 | --2.229376 O b'-1:lemma:2' | 520 | +-1.897543 O b'-1:lemma:ompr' |
| 533 | --2.493849 O b'+1:lemma:1' | 521 | +-1.915892 Supp b'postag:JJ' |
| 534 | --2.529260 O b'lemma:methanol' | 522 | +-2.106107 O b'-1:lemma:2' |
| 535 | --2.707675 O b'+1:lemma:2' | 523 | +-2.456830 O b'+1:lemma:2' |
| 536 | --2.830767 Supp b'postag:JJ' | 524 | +-2.489947 Phase b'postag:JJ' |
| 537 | --2.988306 Phase b'postag:JJ' | 525 | +-2.935122 O b'+1:lemma:1' |
| 538 | --4.548731 O b'-1:lemma::' | 526 | +-4.717358 O b'-1:lemma::' |
| 539 | --4.577007 O b'-1:lemma:_' | 527 | +-4.976926 O b'-1:lemma:_' |
| 540 | 528 | ... | ... |
CRF/reports/report_Run3_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.07999002423801141, 'c2': 0.000868661924339573} | ||
| 5 | +best CV score:0.8083684694714717 | ||
| 6 | +model size: 0.12M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.797188910586862 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.878 0.754 0.811 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 1.000 0.742 0.852 62 | ||
| 20 | + Anti 0.571 0.444 0.500 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.842 0.802 0.821 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.819 0.699 0.754 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.880 0.744 0.797 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.851914 | ||
| 32 | +Temp -> Temp 6.755805 | ||
| 33 | +Anti -> Anti 6.408411 | ||
| 34 | +OD -> OD 6.070648 | ||
| 35 | +Med -> Med 5.592163 | ||
| 36 | +Gtype -> Gtype 5.552172 | ||
| 37 | +Gversion -> Gversion 5.270252 | ||
| 38 | +Air -> Air 4.673888 | ||
| 39 | +Supp -> Supp 4.485002 | ||
| 40 | +Phase -> Phase 4.276420 | ||
| 41 | +O -> O 4.272212 | ||
| 42 | +Technique -> Technique 3.801130 | ||
| 43 | +pH -> pH 2.239489 | ||
| 44 | +Gtype -> Supp 1.797612 | ||
| 45 | +O -> Gtype 1.020757 | ||
| 46 | +O -> Technique 0.845864 | ||
| 47 | +O -> Supp 0.684262 | ||
| 48 | +O -> Anti 0.542673 | ||
| 49 | +Substrain -> Gtype 0.423988 | ||
| 50 | +Technique -> Air 0.409033 | ||
| 51 | +O -> Temp 0.245701 | ||
| 52 | +Med -> O 0.105696 | ||
| 53 | +O -> Gversion 0.000171 | ||
| 54 | +Gtype -> pH 0.000014 | ||
| 55 | +Technique -> OD -0.019259 | ||
| 56 | +Vess -> O -0.025654 | ||
| 57 | +pH -> O -0.063409 | ||
| 58 | +Air -> OD -0.082675 | ||
| 59 | +Air -> Temp -0.095090 | ||
| 60 | +Air -> O -0.133376 | ||
| 61 | +Supp -> OD -0.159102 | ||
| 62 | +Anti -> O -0.247448 | ||
| 63 | +OD -> Air -0.261699 | ||
| 64 | +Gtype -> Med -0.274175 | ||
| 65 | +OD -> Gtype -0.277593 | ||
| 66 | +Strain -> O -0.369145 | ||
| 67 | +Phase -> Air -0.387062 | ||
| 68 | +O -> Phase -0.394932 | ||
| 69 | +Phase -> O -0.493736 | ||
| 70 | +Supp -> O -0.534752 | ||
| 71 | +Air -> Phase -0.600512 | ||
| 72 | +Supp -> Air -0.640514 | ||
| 73 | +OD -> Med -0.713090 | ||
| 74 | +Technique -> O -0.754114 | ||
| 75 | +Technique -> Gtype -0.754511 | ||
| 76 | +O -> OD -0.776176 | ||
| 77 | +O -> Med -0.780627 | ||
| 78 | +Gtype -> O -0.801612 | ||
| 79 | +Gtype -> OD -0.934362 | ||
| 80 | +Air -> Med -1.257535 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Supp -> Supp 4.485002 | ||
| 85 | +Phase -> Phase 4.276420 | ||
| 86 | +O -> O 4.272212 | ||
| 87 | +Technique -> Technique 3.801130 | ||
| 88 | +pH -> pH 2.239489 | ||
| 89 | +Gtype -> Supp 1.797612 | ||
| 90 | +O -> Gtype 1.020757 | ||
| 91 | +O -> Technique 0.845864 | ||
| 92 | +O -> Supp 0.684262 | ||
| 93 | +O -> Anti 0.542673 | ||
| 94 | +Substrain -> Gtype 0.423988 | ||
| 95 | +Technique -> Air 0.409033 | ||
| 96 | +O -> Temp 0.245701 | ||
| 97 | +Med -> O 0.105696 | ||
| 98 | +O -> Gversion 0.000171 | ||
| 99 | +Gtype -> pH 0.000014 | ||
| 100 | +Technique -> OD -0.019259 | ||
| 101 | +Vess -> O -0.025654 | ||
| 102 | +pH -> O -0.063409 | ||
| 103 | +Air -> OD -0.082675 | ||
| 104 | +Air -> Temp -0.095090 | ||
| 105 | +Air -> O -0.133376 | ||
| 106 | +Supp -> OD -0.159102 | ||
| 107 | +Anti -> O -0.247448 | ||
| 108 | +OD -> Air -0.261699 | ||
| 109 | +Gtype -> Med -0.274175 | ||
| 110 | +OD -> Gtype -0.277593 | ||
| 111 | +Strain -> O -0.369145 | ||
| 112 | +Phase -> Air -0.387062 | ||
| 113 | +O -> Phase -0.394932 | ||
| 114 | +Phase -> O -0.493736 | ||
| 115 | +Supp -> O -0.534752 | ||
| 116 | +Air -> Phase -0.600512 | ||
| 117 | +Supp -> Air -0.640514 | ||
| 118 | +OD -> Med -0.713090 | ||
| 119 | +Technique -> O -0.754114 | ||
| 120 | +Technique -> Gtype -0.754511 | ||
| 121 | +O -> OD -0.776176 | ||
| 122 | +O -> Med -0.780627 | ||
| 123 | +Gtype -> O -0.801612 | ||
| 124 | +Gtype -> OD -0.934362 | ||
| 125 | +Air -> Med -1.257535 | ||
| 126 | +Gtype -> Anti -1.262843 | ||
| 127 | +OD -> O -1.377165 | ||
| 128 | +Supp -> Med -1.741716 | ||
| 129 | +Agit -> O -1.885756 | ||
| 130 | +Substrain -> O -1.895216 | ||
| 131 | +Med -> Supp -2.409765 | ||
| 132 | +O -> Air -2.508634 | ||
| 133 | +Phase -> OD -2.584465 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +11.849885 Air b'word:Aerobic' | ||
| 138 | +7.837435 Air b'lemma:anaerobic' | ||
| 139 | +7.665723 O b'word:Cra' | ||
| 140 | +7.042313 Air b'word:Anaerobic' | ||
| 141 | +6.037970 O b'lemma:_' | ||
| 142 | +6.037970 O b'word:_' | ||
| 143 | +5.584218 O b'postag::' | ||
| 144 | +5.431231 O b'-1:lemma:ChIP-exo' | ||
| 145 | +5.349382 Med b'lemma:MOPS' | ||
| 146 | +5.349382 Med b'word:MOPS' | ||
| 147 | +5.289872 Technique b'word:ChIP-Seq' | ||
| 148 | +5.021757 Supp b'lemma:nh4cl' | ||
| 149 | +4.898148 O b'lemma:Custom' | ||
| 150 | +4.898148 O b'word:Custom' | ||
| 151 | +4.861257 Phase b'lemma:stationary' | ||
| 152 | +4.861257 Phase b'word:stationary' | ||
| 153 | +4.814387 Technique b'lemma:rna-seq' | ||
| 154 | +4.799463 Technique b'word:ChIPSeq' | ||
| 155 | +4.773443 Supp b'lemma:nitrate' | ||
| 156 | +4.773443 Supp b'word:nitrate' | ||
| 157 | +4.681396 O b'+1:postag:RB' | ||
| 158 | +4.678066 Supp b'-1:word:Cra' | ||
| 159 | +4.674952 Technique b'word:ChIP-exo' | ||
| 160 | +4.673460 O b'lemma:rpob' | ||
| 161 | +4.673460 O b'word:RpoB' | ||
| 162 | +4.632286 Med b'word:LB' | ||
| 163 | +4.272192 Supp b'lemma:pq' | ||
| 164 | +4.272192 Supp b'word:PQ' | ||
| 165 | +4.216477 Supp b'lemma:arginine' | ||
| 166 | +4.158847 O b'lemma:1' | ||
| 167 | +4.158847 O b'word:1' | ||
| 168 | +4.061171 Gtype b'lemma:wild-type' | ||
| 169 | +4.017592 O b'lemma:chip' | ||
| 170 | +3.861964 OD b'+1:lemma:stationary' | ||
| 171 | +3.861964 OD b'+1:word:stationary' | ||
| 172 | +3.805796 O b'-1:lemma:tag' | ||
| 173 | +3.744431 O b'-1:word:Aerobic' | ||
| 174 | +3.714272 Supp b'lemma:Iron' | ||
| 175 | +3.714272 Supp b'word:Iron' | ||
| 176 | +3.714272 Supp b'+1:word:Deficient' | ||
| 177 | +3.713062 Strain b'lemma:k-12' | ||
| 178 | +3.713062 Strain b'word:K-12' | ||
| 179 | +3.708676 Technique b'lemma:ChIP-exo' | ||
| 180 | +3.655103 O b'lemma:at' | ||
| 181 | +3.537057 Air b'postag:RB' | ||
| 182 | +3.506119 Gversion b'lemma:asm584v2' | ||
| 183 | +3.506119 Gversion b'word:ASM584v2' | ||
| 184 | +3.457008 O b'-1:word:Anaerobic' | ||
| 185 | +3.440372 O b'lemma:for' | ||
| 186 | +3.381566 Gversion b'lemma:chip-seq' | ||
| 187 | +3.373670 Gtype b'lemma:delta-fnr' | ||
| 188 | +3.373670 Gtype b'word:delta-fnr' | ||
| 189 | +3.345890 O b'lemma:a' | ||
| 190 | +3.268014 Gversion b'-1:lemma:nc' | ||
| 191 | +3.268014 Gversion b'-1:word:NC' | ||
| 192 | +3.225995 Air b'word:anaerobic' | ||
| 193 | +3.223526 Substrain b'lemma:mg1655' | ||
| 194 | +3.223526 Substrain b'word:MG1655' | ||
| 195 | +3.207086 O b'word:Lrp' | ||
| 196 | +3.199909 Gversion b'lemma:nc' | ||
| 197 | +3.199909 Gversion b'word:NC' | ||
| 198 | +3.184836 O b'lemma:2' | ||
| 199 | +3.184836 O b'word:2' | ||
| 200 | +3.184258 O b'-1:word:tag' | ||
| 201 | +3.161968 Gtype b'lemma:type' | ||
| 202 | +3.161968 Gtype b'word:type' | ||
| 203 | +3.129124 O b'lemma:.' | ||
| 204 | +3.129124 O b'postag:.' | ||
| 205 | +3.129124 O b'word:.' | ||
| 206 | +3.035046 O b'lemma:2-3' | ||
| 207 | +3.035046 O b'word:2-3' | ||
| 208 | +3.031993 Gtype b'lemma:\xce\xb4cra' | ||
| 209 | +3.023750 Gtype b'word:\xce\x94cra' | ||
| 210 | +3.015053 O b'-1:lemma:lb' | ||
| 211 | +2.985389 O b'postag:IN' | ||
| 212 | +2.963040 O b'+1:word:ChIP-Seq' | ||
| 213 | +2.954499 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 214 | +2.954499 Gtype b'-1:word:\xe2\x88\x86' | ||
| 215 | +2.921032 Gtype b'lemma:flag-tag' | ||
| 216 | +2.921032 Gtype b'-1:lemma:c-terminal' | ||
| 217 | +2.921032 Gtype b'word:Flag-tag' | ||
| 218 | +2.921032 Gtype b'-1:word:C-terminal' | ||
| 219 | +2.914388 O b'lemma:3' | ||
| 220 | +2.914388 O b'word:3' | ||
| 221 | +2.889633 Supp b'+1:lemma:\xc2\xb5m' | ||
| 222 | +2.889633 Supp b'+1:word:\xc2\xb5M' | ||
| 223 | +2.855964 Technique b'-1:lemma:chip-exo' | ||
| 224 | +2.841382 Temp b'-1:word:sample' | ||
| 225 | +2.838133 Med b'lemma:LB' | ||
| 226 | +2.837407 Gtype b'lemma:wt' | ||
| 227 | +2.815709 Phase b'lemma:mid-log' | ||
| 228 | +2.815709 Phase b'word:mid-log' | ||
| 229 | +2.815078 O b'word:OmpR' | ||
| 230 | +2.800233 Temp b'-1:lemma:sample' | ||
| 231 | +2.743118 Anti b'lemma:seqa' | ||
| 232 | +2.743118 Anti b'word:SeqA' | ||
| 233 | +2.738947 Gtype b'lemma:arca8myc' | ||
| 234 | +2.738947 Gtype b'word:ArcA8myc' | ||
| 235 | +2.734940 Supp b'lemma:rifampicin' | ||
| 236 | +2.734940 Supp b'word:rifampicin' | ||
| 237 | +2.713912 Technique b'lemma:rnaseq' | ||
| 238 | +2.713912 Technique b'word:RNASeq' | ||
| 239 | +2.676140 O b'+1:postag:NNP' | ||
| 240 | +2.668046 Gtype b'postag:-RRB-' | ||
| 241 | +2.666708 O b'lemma:rep1' | ||
| 242 | +2.666708 O b'word:rep1' | ||
| 243 | +2.639615 O b'word:for' | ||
| 244 | +2.628763 O b'lemma:with' | ||
| 245 | +2.628763 O b'word:with' | ||
| 246 | +2.602495 O b'lemma:b' | ||
| 247 | +2.602495 O b'word:B' | ||
| 248 | +2.600005 O b'+1:postag:VBP' | ||
| 249 | +2.593478 Supp b'+1:word:hours' | ||
| 250 | +2.586011 Technique b'lemma:chipseq' | ||
| 251 | +2.559150 Strain b'+1:lemma:substr' | ||
| 252 | +2.559150 Strain b'+1:word:substr' | ||
| 253 | +2.527855 Supp b'lemma:no3' | ||
| 254 | +2.527855 Supp b'word:NO3' | ||
| 255 | +2.521274 O b'lemma:-' | ||
| 256 | +2.521274 O b'word:-' | ||
| 257 | +2.481893 O b'lemma:rep3' | ||
| 258 | +2.481893 O b'word:rep3' | ||
| 259 | +2.477491 Gtype b'word:WT' | ||
| 260 | +2.457514 Gtype b'+1:lemma:type' | ||
| 261 | +2.457514 Gtype b'+1:word:type' | ||
| 262 | +2.445177 Supp b'lemma:Fe' | ||
| 263 | +2.445177 Supp b'word:Fe' | ||
| 264 | +2.387444 O b'lemma:rep2' | ||
| 265 | +2.387444 O b'word:rep2' | ||
| 266 | +2.380978 OD b'lemma:od600' | ||
| 267 | +2.380978 OD b'word:OD600' | ||
| 268 | +2.377956 Anti b'lemma:anti-rpos' | ||
| 269 | +2.377956 Anti b'word:anti-RpoS' | ||
| 270 | +2.363736 O b'lemma:oxyr' | ||
| 271 | +2.363736 O b'word:OxyR' | ||
| 272 | +2.360999 Anti b'lemma:none' | ||
| 273 | +2.360999 Anti b'word:none' | ||
| 274 | +2.343495 Gtype b'word:wt' | ||
| 275 | +2.342659 Supp b'lemma:dpd' | ||
| 276 | +2.342659 Supp b'word:DPD' | ||
| 277 | +2.334798 Gtype b'lemma:\xce\xb4ompr' | ||
| 278 | +2.334798 Gtype b'word:\xce\x94ompR' | ||
| 279 | +2.303303 O b'-1:lemma:0.3' | ||
| 280 | +2.303303 O b'-1:word:0.3' | ||
| 281 | +2.262158 O b'lemma:\xcf\x8332' | ||
| 282 | +2.262158 O b'word:\xcf\x8332' | ||
| 283 | +2.249986 O b'word:A' | ||
| 284 | +2.245441 Vess b'lemma:flask' | ||
| 285 | +2.245441 Vess b'-1:lemma:warm' | ||
| 286 | +2.245441 Vess b'word:flask' | ||
| 287 | +2.245441 Vess b'-1:word:warmed' | ||
| 288 | +2.238883 O b'+1:lemma:od600' | ||
| 289 | +2.238883 O b'+1:word:OD600' | ||
| 290 | +2.225888 O b'postag:DT' | ||
| 291 | +2.181011 O b'-1:lemma:0.3-0.35' | ||
| 292 | +2.181011 O b'-1:word:0.3-0.35' | ||
| 293 | +2.166240 O b'lemma:or' | ||
| 294 | +2.166240 O b'word:or' | ||
| 295 | +2.155012 Supp b'lemma:acetate' | ||
| 296 | +2.155012 Supp b'word:acetate' | ||
| 297 | +2.153135 OD b'lemma:od450' | ||
| 298 | +2.153135 OD b'word:OD450' | ||
| 299 | +2.153135 OD b'-1:word:At' | ||
| 300 | +2.131868 Supp b'lemma:glucose' | ||
| 301 | +2.131868 Supp b'word:glucose' | ||
| 302 | +2.127183 Anti b'+1:lemma:antibody' | ||
| 303 | +2.127183 Anti b'+1:word:antibody' | ||
| 304 | +2.127102 O b'lemma:culture' | ||
| 305 | +2.121306 Med b'+1:lemma:0.4' | ||
| 306 | +2.121306 Med b'+1:word:0.4' | ||
| 307 | +2.104976 Anti b'lemma:anti-myc' | ||
| 308 | +2.104976 Anti b'word:anti-myc' | ||
| 309 | +2.090073 Supp b'lemma:iptg' | ||
| 310 | +2.090073 Supp b'word:IPTG' | ||
| 311 | +2.088014 O b'lemma:chip-fnr' | ||
| 312 | +2.088014 O b'word:chip-Fnr' | ||
| 313 | +2.087065 Gtype b'lemma:nsrr' | ||
| 314 | +2.087065 Gtype b'word:NsrR' | ||
| 315 | +2.069607 O b'+1:postag::' | ||
| 316 | +2.049162 Phase b'-1:word:growing' | ||
| 317 | +2.041081 Gversion b'word:ChIP-Seq' | ||
| 318 | +2.034077 O b'-1:word:fnr' | ||
| 319 | +2.027233 Gtype b'+1:postag::' | ||
| 320 | +2.026441 Gtype b'postag:JJ' | ||
| 321 | +2.012468 O b'postag:VBN' | ||
| 322 | +2.003087 O b'lemma:soxs' | ||
| 323 | +2.003087 O b'word:SoxS' | ||
| 324 | +2.003087 O b'lemma:soxr' | ||
| 325 | +2.003087 O b'word:SoxR' | ||
| 326 | +1.984406 O b'+1:lemma:o.d.' | ||
| 327 | +1.984406 O b'+1:word:O.D.' | ||
| 328 | +1.975363 OD b'+1:postag:JJ' | ||
| 329 | +1.968960 Air b'-1:lemma:ChIP-Seq' | ||
| 330 | +1.968960 Air b'-1:word:ChIP-Seq' | ||
| 331 | +1.963497 Gtype b'lemma:pk4854' | ||
| 332 | +1.963497 Gtype b'word:PK4854' | ||
| 333 | +1.957953 Gtype b'word:cra' | ||
| 334 | +1.957254 Air b'lemma:anerobically' | ||
| 335 | +1.957254 Air b'word:anerobically' | ||
| 336 | +1.954863 O b'+1:lemma:pq' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.090059 O b'-1:lemma:e.' | ||
| 341 | +-0.092645 O b'+1:postag:-RRB-' | ||
| 342 | +-0.095582 O b'-1:word:the' | ||
| 343 | +-0.095914 O b'+1:lemma:minimal' | ||
| 344 | +-0.095914 O b'+1:word:minimal' | ||
| 345 | +-0.096813 Strain b'postag:NN' | ||
| 346 | +-0.100844 O b'word:LB' | ||
| 347 | +-0.102252 O b'lemma:anaerobic' | ||
| 348 | +-0.106574 OD b'+1:postag:CC' | ||
| 349 | +-0.107348 Air b'+1:postag:NN' | ||
| 350 | +-0.107934 O b'-1:word:grown' | ||
| 351 | +-0.108595 Supp b'-1:postag:VBG' | ||
| 352 | +-0.108740 pH b'postag:NN' | ||
| 353 | +-0.112315 O b'-1:lemma:ml' | ||
| 354 | +-0.112801 O b'+1:lemma:rep1' | ||
| 355 | +-0.112801 O b'+1:word:rep1' | ||
| 356 | +-0.112908 O b'-1:lemma:od600' | ||
| 357 | +-0.112908 O b'-1:word:OD600' | ||
| 358 | +-0.115106 Air b'-1:postag:CC' | ||
| 359 | +-0.115496 O b'lemma:co2' | ||
| 360 | +-0.115496 O b'word:CO2' | ||
| 361 | +-0.122244 O b'-1:lemma:the' | ||
| 362 | +-0.124640 O b'-1:lemma:~' | ||
| 363 | +-0.124640 O b'-1:word:~' | ||
| 364 | +-0.127544 OD b'+1:lemma:and' | ||
| 365 | +-0.127544 OD b'+1:word:and' | ||
| 366 | +-0.129259 O b'-1:lemma:-lrb-' | ||
| 367 | +-0.129259 O b'-1:word:-LRB-' | ||
| 368 | +-0.133618 O b'+1:lemma:_' | ||
| 369 | +-0.133618 O b'+1:word:_' | ||
| 370 | +-0.135372 O b'+1:lemma:\xc2\xb0c' | ||
| 371 | +-0.135372 O b'+1:word:\xc2\xb0C' | ||
| 372 | +-0.136841 Technique b'isNumber' | ||
| 373 | +-0.139019 O b'lemma:30' | ||
| 374 | +-0.139019 O b'word:30' | ||
| 375 | +-0.139199 Phase b'-1:postag:NN' | ||
| 376 | +-0.149458 O b'+1:lemma:5' | ||
| 377 | +-0.149458 O b'+1:word:5' | ||
| 378 | +-0.151250 OD b'postag:JJ' | ||
| 379 | +-0.152851 Supp b'+1:lemma:acetate' | ||
| 380 | +-0.152851 Supp b'+1:word:acetate' | ||
| 381 | +-0.156762 O b'+1:lemma:.' | ||
| 382 | +-0.156762 O b'+1:postag:.' | ||
| 383 | +-0.156762 O b'+1:word:.' | ||
| 384 | +-0.158764 O b'-1:postag:-LRB-' | ||
| 385 | +-0.161868 Gversion b'-1:postag:NN' | ||
| 386 | +-0.163014 pH b'isLower' | ||
| 387 | +-0.167779 O b'-1:lemma:30' | ||
| 388 | +-0.167779 O b'-1:word:30' | ||
| 389 | +-0.171168 O b'lemma:150' | ||
| 390 | +-0.171168 O b'+1:lemma:mg/ml' | ||
| 391 | +-0.171168 O b'word:150' | ||
| 392 | +-0.171168 O b'+1:word:mg/mL' | ||
| 393 | +-0.176143 O b'lemma:0.3' | ||
| 394 | +-0.176143 O b'word:0.3' | ||
| 395 | +-0.187819 O b'lemma:aerobically' | ||
| 396 | +-0.187819 O b'word:aerobically' | ||
| 397 | +-0.198962 O b'word:hours' | ||
| 398 | +-0.212759 Med b'+1:postag:NNS' | ||
| 399 | +-0.224619 Gtype b'-1:postag:SYM' | ||
| 400 | +-0.228665 O b'lemma:fecl2' | ||
| 401 | +-0.228665 O b'word:FeCl2' | ||
| 402 | +-0.233718 O b'+1:lemma:or' | ||
| 403 | +-0.233718 O b'+1:word:or' | ||
| 404 | +-0.234368 O b'lemma:e.' | ||
| 405 | +-0.236980 O b'lemma:dissolve' | ||
| 406 | +-0.236980 O b'word:dissolved' | ||
| 407 | +-0.241256 Supp b'+1:lemma:rifampicin' | ||
| 408 | +-0.241256 Supp b'+1:word:rifampicin' | ||
| 409 | +-0.241793 O b'-1:word:ml' | ||
| 410 | +-0.242844 O b'-1:lemma:mid-log' | ||
| 411 | +-0.242844 O b'-1:word:mid-log' | ||
| 412 | +-0.244892 O b'-1:lemma:o2' | ||
| 413 | +-0.244892 O b'-1:word:O2' | ||
| 414 | +-0.250659 O b'-1:lemma:0.2' | ||
| 415 | +-0.250659 O b'-1:word:0.2' | ||
| 416 | +-0.257587 Air b'-1:postag:JJ' | ||
| 417 | +-0.275537 O b'+1:postag:IN' | ||
| 418 | +-0.276339 Agit b'isUpper' | ||
| 419 | +-0.288029 O b'lemma:minimal' | ||
| 420 | +-0.288029 O b'word:minimal' | ||
| 421 | +-0.288682 O b'lemma:0.2' | ||
| 422 | +-0.288682 O b'word:0.2' | ||
| 423 | +-0.295170 O b'+1:lemma:%' | ||
| 424 | +-0.295170 O b'+1:word:%' | ||
| 425 | +-0.312769 Supp b'+1:postag:IN' | ||
| 426 | +-0.314136 O b'lemma:of' | ||
| 427 | +-0.314136 O b'word:of' | ||
| 428 | +-0.316019 O b'lemma:phase' | ||
| 429 | +-0.316019 O b'word:phase' | ||
| 430 | +-0.317543 O b'-1:lemma:rpob' | ||
| 431 | +-0.317543 O b'-1:word:RpoB' | ||
| 432 | +-0.352099 O b'lemma:0.1' | ||
| 433 | +-0.352099 O b'word:0.1' | ||
| 434 | +-0.354536 O b'-1:lemma:grow' | ||
| 435 | +-0.355121 O b'+1:postag:NNS' | ||
| 436 | +-0.360104 O b'lemma:dpd' | ||
| 437 | +-0.360104 O b'word:DPD' | ||
| 438 | +-0.361422 Med b'postag:CD' | ||
| 439 | +-0.374440 Air b'+1:postag:JJ' | ||
| 440 | +-0.374640 O b'+1:lemma:c' | ||
| 441 | +-0.386040 O b'lemma:medium' | ||
| 442 | +-0.386040 O b'word:medium' | ||
| 443 | +-0.425432 OD b'+1:postag:NN' | ||
| 444 | +-0.433655 Med b'+1:postag:NN' | ||
| 445 | +-0.442754 Supp b'-1:postag:NNP' | ||
| 446 | +-0.444075 O b'-1:postag:IN' | ||
| 447 | +-0.462977 O b'-1:lemma:IP' | ||
| 448 | +-0.462977 O b'-1:word:IP' | ||
| 449 | +-0.473099 O b'lemma:od600' | ||
| 450 | +-0.473099 O b'word:OD600' | ||
| 451 | +-0.475947 Supp b'-1:lemma:%' | ||
| 452 | +-0.475947 Supp b'-1:word:%' | ||
| 453 | +-0.478194 Supp b'+1:postag:VBN' | ||
| 454 | +-0.493813 O b'-1:lemma:dissolve' | ||
| 455 | +-0.493813 O b'+1:lemma:methanol' | ||
| 456 | +-0.493813 O b'-1:word:dissolved' | ||
| 457 | +-0.493813 O b'+1:word:methanol' | ||
| 458 | +-0.496860 Temp b'+1:lemma:to' | ||
| 459 | +-0.496860 Temp b'+1:postag:TO' | ||
| 460 | +-0.496860 Temp b'+1:word:to' | ||
| 461 | +-0.499631 O b'word:WT' | ||
| 462 | +-0.513610 Temp b'postag:NN' | ||
| 463 | +-0.514977 O b'lemma:glucose' | ||
| 464 | +-0.514977 O b'word:glucose' | ||
| 465 | +-0.536212 OD b'lemma:-lrb-' | ||
| 466 | +-0.536212 OD b'word:-LRB-' | ||
| 467 | +-0.551562 O b'lemma:media' | ||
| 468 | +-0.551562 O b'word:media' | ||
| 469 | +-0.560747 O b'+1:lemma:fecl2' | ||
| 470 | +-0.560747 O b'+1:word:FeCl2' | ||
| 471 | +-0.568774 O b'-1:lemma:co2' | ||
| 472 | +-0.568774 O b'-1:word:CO2' | ||
| 473 | +-0.570589 O b'lemma:20' | ||
| 474 | +-0.570589 O b'word:20' | ||
| 475 | +-0.601473 O b'-1:lemma:37' | ||
| 476 | +-0.601473 O b'-1:word:37' | ||
| 477 | +-0.606741 O b'+1:word:ChIP-exo' | ||
| 478 | +-0.613813 O b'+1:lemma:g/l' | ||
| 479 | +-0.613813 O b'+1:word:g/L' | ||
| 480 | +-0.619083 OD b'postag:-LRB-' | ||
| 481 | +-0.649236 O b'+1:word:C' | ||
| 482 | +-0.665832 O b'+1:lemma:supplement' | ||
| 483 | +-0.665832 O b'+1:word:supplemented' | ||
| 484 | +-0.674327 O b'lemma:37' | ||
| 485 | +-0.674327 O b'word:37' | ||
| 486 | +-0.686899 O b'lemma:2h' | ||
| 487 | +-0.686899 O b'-1:lemma:additional' | ||
| 488 | +-0.686899 O b'word:2h' | ||
| 489 | +-0.686899 O b'-1:word:additional' | ||
| 490 | +-0.702076 O b'+1:lemma:in' | ||
| 491 | +-0.702076 O b'+1:word:in' | ||
| 492 | +-0.720953 Med b'-1:postag:NN' | ||
| 493 | +-0.734913 Med b'+1:postag:IN' | ||
| 494 | +-0.738740 O b'postag:RB' | ||
| 495 | +-0.780009 Supp b'-1:postag:NN' | ||
| 496 | +-0.812687 Phase b'-1:postag:JJ' | ||
| 497 | +-0.862547 O b'+1:lemma:at' | ||
| 498 | +-0.862547 O b'+1:word:at' | ||
| 499 | +-0.884705 O b'lemma:anaerobically' | ||
| 500 | +-0.884705 O b'word:anaerobically' | ||
| 501 | +-0.954289 O b'lemma:rifampicin' | ||
| 502 | +-0.954289 O b'word:rifampicin' | ||
| 503 | +-0.975364 O b'+1:lemma:hour' | ||
| 504 | +-0.985559 O b'-1:lemma:nsrr' | ||
| 505 | +-0.985559 O b'-1:word:NsrR' | ||
| 506 | +-0.997260 O b'-1:postag::' | ||
| 507 | +-1.064484 O b'+1:lemma:2' | ||
| 508 | +-1.064484 O b'+1:word:2' | ||
| 509 | +-1.067361 O b'+1:postag:VBG' | ||
| 510 | +-1.084453 Temp b'isLower' | ||
| 511 | +-1.090676 Technique b'isLower' | ||
| 512 | +-1.096556 Air b'postag:NN' | ||
| 513 | +-1.130890 O b'-1:postag:VBG' | ||
| 514 | +-1.137066 O b'lemma:methanol' | ||
| 515 | +-1.137066 O b'word:methanol' | ||
| 516 | +-1.146647 Med b'-1:postag:IN' | ||
| 517 | +-1.273126 Gtype b'isUpper' | ||
| 518 | +-1.333154 OD b'isNumber' | ||
| 519 | +-1.341950 Anti b'postag:NNP' | ||
| 520 | +-1.346674 O b'lemma:wt' | ||
| 521 | +-1.359316 O b'-1:lemma:2' | ||
| 522 | +-1.359316 O b'-1:word:2' | ||
| 523 | +-1.393623 O b'lemma:mid-log' | ||
| 524 | +-1.393623 O b'word:mid-log' | ||
| 525 | +-1.528613 Supp b'postag:CC' | ||
| 526 | +-1.536721 O b'-1:lemma:ompr' | ||
| 527 | +-1.544831 O b'+1:lemma:1' | ||
| 528 | +-1.544831 O b'+1:word:1' | ||
| 529 | +-1.748788 Gtype b'isLower' | ||
| 530 | +-2.010239 O b'+1:word:hours' | ||
| 531 | +-2.214812 Gversion b'isLower' | ||
| 532 | +-2.235984 O b'-1:lemma:_' | ||
| 533 | +-2.235984 O b'-1:word:_' | ||
| 534 | +-2.367089 Supp b'postag:JJ' | ||
| 535 | +-2.519281 O b'-1:lemma::' | ||
| 536 | +-2.519281 O b'-1:word::' | ||
| 537 | +-2.594531 O b'word:cells' | ||
| 538 | +-3.006120 Gtype b'isNumber' | ||
| 539 | +-3.055847 Phase b'postag:JJ' | ||
| 540 | + |
CRF/reports/report_Run3_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.3568772328262357, 'c2': 0.03679897833962741} | ||
| 5 | +best CV score:0.7912405713814187 | ||
| 6 | +model size: 0.06M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7675992381773036 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.800 0.842 0.821 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.789 0.882 19 | ||
| 19 | + Air 0.780 0.742 0.760 62 | ||
| 20 | + Anti 0.800 0.444 0.571 9 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.845 0.774 0.808 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.806 0.640 0.713 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.842 0.723 0.768 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 5.955565 | ||
| 32 | +Agit -> Agit 5.919199 | ||
| 33 | +Temp -> Temp 5.457223 | ||
| 34 | +Med -> Med 5.142852 | ||
| 35 | +Anti -> Anti 5.096560 | ||
| 36 | +Air -> Air 4.785647 | ||
| 37 | +Gtype -> Gtype 4.265020 | ||
| 38 | +O -> O 4.167033 | ||
| 39 | +Gversion -> Gversion 4.096654 | ||
| 40 | +Supp -> Supp 4.095690 | ||
| 41 | +Phase -> Phase 4.087605 | ||
| 42 | +Technique -> Technique 3.540826 | ||
| 43 | +O -> Supp 2.079503 | ||
| 44 | +Gtype -> Supp 1.995901 | ||
| 45 | +Air -> O 1.832886 | ||
| 46 | +pH -> pH 1.823851 | ||
| 47 | +Substrain -> Gtype 1.407319 | ||
| 48 | +O -> Gtype 1.287017 | ||
| 49 | +O -> Technique 1.257508 | ||
| 50 | +O -> Anti 0.872529 | ||
| 51 | +Technique -> Air 0.856385 | ||
| 52 | +O -> Temp 0.849337 | ||
| 53 | +Med -> O 0.823339 | ||
| 54 | +OD -> Phase 0.567936 | ||
| 55 | +Supp -> O 0.535077 | ||
| 56 | +O -> Gversion 0.454745 | ||
| 57 | +Temp -> O 0.378011 | ||
| 58 | +O -> Med 0.340773 | ||
| 59 | +Phase -> O 0.256163 | ||
| 60 | +Gtype -> Air 0.217223 | ||
| 61 | +Gtype -> pH 0.173493 | ||
| 62 | +O -> Phase 0.079173 | ||
| 63 | +O -> Strain 0.031985 | ||
| 64 | +Supp -> Air -0.000004 | ||
| 65 | +Gtype -> Anti -0.020854 | ||
| 66 | +Gtype -> Gversion -0.026214 | ||
| 67 | +Technique -> Gtype -0.122709 | ||
| 68 | +OD -> O -0.164948 | ||
| 69 | +Technique -> pH -0.215348 | ||
| 70 | +Supp -> Med -0.427866 | ||
| 71 | +O -> Air -0.523868 | ||
| 72 | +Agit -> O -0.572132 | ||
| 73 | +Substrain -> O -0.707348 | ||
| 74 | +Gtype -> OD -0.819099 | ||
| 75 | +Med -> Supp -0.863239 | ||
| 76 | +Phase -> OD -0.994549 | ||
| 77 | + | ||
| 78 | + | ||
| 79 | +Top unlikely transitions: | ||
| 80 | +OD -> OD 5.955565 | ||
| 81 | +Agit -> Agit 5.919199 | ||
| 82 | +Temp -> Temp 5.457223 | ||
| 83 | +Med -> Med 5.142852 | ||
| 84 | +Anti -> Anti 5.096560 | ||
| 85 | +Air -> Air 4.785647 | ||
| 86 | +Gtype -> Gtype 4.265020 | ||
| 87 | +O -> O 4.167033 | ||
| 88 | +Gversion -> Gversion 4.096654 | ||
| 89 | +Supp -> Supp 4.095690 | ||
| 90 | +Phase -> Phase 4.087605 | ||
| 91 | +Technique -> Technique 3.540826 | ||
| 92 | +O -> Supp 2.079503 | ||
| 93 | +Gtype -> Supp 1.995901 | ||
| 94 | +Air -> O 1.832886 | ||
| 95 | +pH -> pH 1.823851 | ||
| 96 | +Substrain -> Gtype 1.407319 | ||
| 97 | +O -> Gtype 1.287017 | ||
| 98 | +O -> Technique 1.257508 | ||
| 99 | +O -> Anti 0.872529 | ||
| 100 | +Technique -> Air 0.856385 | ||
| 101 | +O -> Temp 0.849337 | ||
| 102 | +Med -> O 0.823339 | ||
| 103 | +OD -> Phase 0.567936 | ||
| 104 | +Supp -> O 0.535077 | ||
| 105 | +O -> Gversion 0.454745 | ||
| 106 | +Temp -> O 0.378011 | ||
| 107 | +O -> Med 0.340773 | ||
| 108 | +Phase -> O 0.256163 | ||
| 109 | +Gtype -> Air 0.217223 | ||
| 110 | +Gtype -> pH 0.173493 | ||
| 111 | +O -> Phase 0.079173 | ||
| 112 | +O -> Strain 0.031985 | ||
| 113 | +Supp -> Air -0.000004 | ||
| 114 | +Gtype -> Anti -0.020854 | ||
| 115 | +Gtype -> Gversion -0.026214 | ||
| 116 | +Technique -> Gtype -0.122709 | ||
| 117 | +OD -> O -0.164948 | ||
| 118 | +Technique -> pH -0.215348 | ||
| 119 | +Supp -> Med -0.427866 | ||
| 120 | +O -> Air -0.523868 | ||
| 121 | +Agit -> O -0.572132 | ||
| 122 | +Substrain -> O -0.707348 | ||
| 123 | +Gtype -> OD -0.819099 | ||
| 124 | +Med -> Supp -0.863239 | ||
| 125 | +Phase -> OD -0.994549 | ||
| 126 | + | ||
| 127 | + | ||
| 128 | +Top positive: | ||
| 129 | +7.311391 O b'lemma:_' | ||
| 130 | +6.386213 O b'lemma:1' | ||
| 131 | +5.942659 Air b'lemma:anaerobic' | ||
| 132 | +5.902775 Supp b'lemma:Iron' | ||
| 133 | +5.497006 Strain b'lemma:k-12' | ||
| 134 | +5.443070 Air b'lemma:aerobic' | ||
| 135 | +5.417956 Technique b'lemma:ChIP-exo' | ||
| 136 | +5.360099 O b'lemma:2' | ||
| 137 | +4.972296 Phase b'lemma:mid-log' | ||
| 138 | +4.783538 O b'postag:IN' | ||
| 139 | +4.776370 Supp b'lemma:nitrate' | ||
| 140 | +4.762645 O b'lemma:rpob' | ||
| 141 | +4.691195 Air b'-1:lemma:ChIP-Seq' | ||
| 142 | +4.618875 O b'lemma:3' | ||
| 143 | +4.601053 Substrain b'lemma:mg1655' | ||
| 144 | +4.462226 Technique b'lemma:chipseq' | ||
| 145 | +4.387311 Phase b'lemma:stationary' | ||
| 146 | +4.222036 OD b'lemma:od600' | ||
| 147 | +4.073562 Gtype b'+1:lemma:type' | ||
| 148 | +4.057916 Supp b'lemma:pq' | ||
| 149 | +3.985864 Supp b'lemma:nh4cl' | ||
| 150 | +3.972087 Gtype b'lemma:\xce\xb4cra' | ||
| 151 | +3.961883 Air b'lemma:Aerobic' | ||
| 152 | +3.882824 O b'postag::' | ||
| 153 | +3.851044 Gtype b'lemma:type' | ||
| 154 | +3.817888 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 155 | +3.749284 Gtype b'lemma:flag-tag' | ||
| 156 | +3.749284 Gtype b'-1:lemma:c-terminal' | ||
| 157 | +3.742652 Gtype b'lemma:wt' | ||
| 158 | +3.740216 Med b'lemma:lb' | ||
| 159 | +3.740189 Supp b'lemma:glucose' | ||
| 160 | +3.732373 O b'lemma:rep1' | ||
| 161 | +3.722079 O b'lemma:b' | ||
| 162 | +3.685687 Gversion b'lemma:asm584v2' | ||
| 163 | +3.675629 Gversion b'lemma:nc' | ||
| 164 | +3.658421 Supp b'+1:lemma:\xc2\xb5m' | ||
| 165 | +3.453987 O b'lemma:a' | ||
| 166 | +3.428380 O b'lemma:rep2' | ||
| 167 | +3.424503 Med b'lemma:LB' | ||
| 168 | +3.414190 Gtype b'lemma:arca8myc' | ||
| 169 | +3.403980 O b'-1:lemma:ChIP-exo' | ||
| 170 | +3.303023 Med b'lemma:MOPS' | ||
| 171 | +3.265948 Technique b'lemma:rna-seq' | ||
| 172 | +3.251521 Technique b'lemma:ChIP-Seq' | ||
| 173 | +3.210550 O b'lemma:\xcf\x8332' | ||
| 174 | +3.209996 O b'lemma:Cra' | ||
| 175 | +3.119550 O b'postag:VBN' | ||
| 176 | +3.109382 Gtype b'lemma:delta-arca' | ||
| 177 | +3.070896 O b'lemma:.' | ||
| 178 | +3.070896 O b'postag:.' | ||
| 179 | +3.047834 Technique b'lemma:chip-seq' | ||
| 180 | +3.046544 Gtype b'lemma:\xe2\x88\x86' | ||
| 181 | +3.018451 Supp b'lemma:Fe' | ||
| 182 | +3.007680 Supp b'lemma:acetate' | ||
| 183 | +2.972749 Air b'postag:RB' | ||
| 184 | +2.971413 O b'-1:lemma:tag' | ||
| 185 | +2.959092 Med b'+1:lemma:0.4' | ||
| 186 | +2.947878 O b'lemma:rep3' | ||
| 187 | +2.936895 Gtype b'lemma:fnr8myc' | ||
| 188 | +2.934222 Anti b'+1:lemma:antibody' | ||
| 189 | +2.898737 Supp b'lemma:no3' | ||
| 190 | +2.896406 O b'lemma:Custom' | ||
| 191 | +2.856337 O b'postag:CC' | ||
| 192 | +2.850328 Technique b'-1:lemma:IP' | ||
| 193 | +2.848169 Temp b'lemma:\xc2\xb0c' | ||
| 194 | +2.841904 Supp b'lemma:fructose' | ||
| 195 | +2.805619 Technique b'lemma:rnaseq' | ||
| 196 | +2.779984 Gtype b'lemma:nsrr' | ||
| 197 | +2.746209 O b'+1:lemma:od600' | ||
| 198 | +2.719832 Supp b'lemma:rifampicin' | ||
| 199 | +2.673293 O b'-1:lemma:Aerobic' | ||
| 200 | +2.634726 Vess b'lemma:flask' | ||
| 201 | +2.634726 Vess b'-1:lemma:warm' | ||
| 202 | +2.632998 Supp b'+1:lemma:1' | ||
| 203 | +2.627950 pH b'lemma:ph5' | ||
| 204 | +2.627950 pH b'+1:lemma:.5' | ||
| 205 | +2.584412 Gtype b'lemma:\xce\xb4fur' | ||
| 206 | +2.580319 OD b'lemma:od450' | ||
| 207 | +2.506717 Gtype b'+1:lemma:with' | ||
| 208 | +2.487258 Supp b'lemma:dpd' | ||
| 209 | +2.454806 Supp b'+1:lemma:2' | ||
| 210 | +2.450355 Gversion b'-1:lemma:nc' | ||
| 211 | +2.405914 O b'lemma:-' | ||
| 212 | +2.403636 Supp b'lemma:arginine' | ||
| 213 | +2.402149 O b'-1:lemma:type' | ||
| 214 | +2.392360 Gtype b'lemma:delta-fnr' | ||
| 215 | +2.374469 O b'-1:lemma:0.3-0.35' | ||
| 216 | +2.367275 Gversion b'lemma:000913' | ||
| 217 | +2.362681 O b'lemma:CEL' | ||
| 218 | +2.349730 Gversion b'lemma:u00096' | ||
| 219 | +2.349730 Gversion b'+1:lemma:.2' | ||
| 220 | +2.344881 Gtype b'+1:lemma:ph5' | ||
| 221 | +2.330556 Temp b'-1:lemma:sample' | ||
| 222 | +2.315441 Med b'lemma:m63' | ||
| 223 | +2.315022 O b'postag:DT' | ||
| 224 | +2.300074 Gtype b'+1:lemma:pq' | ||
| 225 | +2.267250 Gtype b'-1:lemma:rpob' | ||
| 226 | +2.265036 Anti b'lemma:none' | ||
| 227 | +2.258989 O b'-1:lemma:glucose' | ||
| 228 | +2.231273 Med b'+1:lemma:minimal' | ||
| 229 | +2.224003 O b'+1:postag:RB' | ||
| 230 | +2.220750 Med b'lemma:media' | ||
| 231 | +2.206396 Gtype b'lemma:wild-type' | ||
| 232 | +2.185276 Gtype b'+1:lemma:flagtag' | ||
| 233 | +2.172170 Temp b'-1:lemma:\xcf\x8332' | ||
| 234 | +2.170608 Gversion b'lemma:.2' | ||
| 235 | +2.170608 Gversion b'-1:lemma:u00096' | ||
| 236 | +2.168316 O b'lemma:chip' | ||
| 237 | +2.140388 pH b'lemma:.5' | ||
| 238 | +2.140388 pH b'-1:lemma:ph5' | ||
| 239 | +2.092729 Technique b'-1:lemma:chip-exo' | ||
| 240 | +2.092406 O b'postag:VBG' | ||
| 241 | +2.091643 Supp b'+1:lemma:_' | ||
| 242 | +2.084452 Gtype b'-1:lemma:ptac' | ||
| 243 | +2.084202 Strain b'+1:lemma:substr' | ||
| 244 | +2.037782 O b'+1:postag:NNP' | ||
| 245 | +2.036707 O b'lemma:with' | ||
| 246 | +2.020481 Anti b'lemma:seqa' | ||
| 247 | +2.017889 O b'lemma:affyexp' | ||
| 248 | +2.016765 O b'+1:lemma:pq' | ||
| 249 | +2.014069 Supp b'-1:lemma:\xc2\xb5m' | ||
| 250 | +2.007497 OD b'+1:lemma:stationary' | ||
| 251 | +2.005510 O b'lemma:s' | ||
| 252 | +1.992269 O b'-1:lemma:l1' | ||
| 253 | +1.979839 Supp b'-1:lemma:with' | ||
| 254 | +1.950746 Med b'+1:lemma:2.0' | ||
| 255 | +1.943075 Supp b'lemma:nacl' | ||
| 256 | +1.939615 O b'lemma:or' | ||
| 257 | +1.934384 O b'-1:lemma:\xc2\xb0c' | ||
| 258 | +1.924238 Gversion b'lemma:chip-seq' | ||
| 259 | +1.912397 Air b'-1:lemma:-' | ||
| 260 | +1.907041 O b'-1:lemma:anaerobic' | ||
| 261 | +1.897746 Supp b'lemma:20' | ||
| 262 | +1.889218 Gtype b'+1:lemma:_' | ||
| 263 | +1.887958 Phase b'-1:lemma:mid-log' | ||
| 264 | +1.881451 Technique b'+1:lemma:chip-exo' | ||
| 265 | +1.878291 Temp b'-1:lemma:43' | ||
| 266 | +1.855251 pH b'+1:postag:CD' | ||
| 267 | +1.845211 Gversion b'lemma:_' | ||
| 268 | +1.834481 Gtype b'lemma:\xce\xb4ompr' | ||
| 269 | +1.833194 O b'-1:lemma:0.3' | ||
| 270 | +1.819503 O b'postag:VBD' | ||
| 271 | +1.794552 Supp b'-1:lemma:Cra' | ||
| 272 | +1.789484 Temp b'lemma:43' | ||
| 273 | +1.773482 Supp b'lemma:iptg' | ||
| 274 | +1.756704 O b'lemma:culture' | ||
| 275 | +1.754791 Temp b'+1:lemma:\xc2\xb0c' | ||
| 276 | +1.743371 Technique b'-1:lemma:1' | ||
| 277 | +1.741538 Temp b'lemma:37' | ||
| 278 | +1.722498 Air b'lemma:anaerobically' | ||
| 279 | +1.719157 O b'-1:lemma:lb' | ||
| 280 | +1.715507 Air b'-1:lemma:co2' | ||
| 281 | +1.702741 Med b'-1:lemma:glucose' | ||
| 282 | +1.692405 Med b'lemma:L' | ||
| 283 | +1.692405 Med b'+1:lemma:broth' | ||
| 284 | +1.691874 Med b'+1:lemma:supplement' | ||
| 285 | +1.691307 OD b'-1:lemma:~' | ||
| 286 | +1.683838 Supp b'lemma:Leu' | ||
| 287 | +1.682972 O b'lemma:genotype/variation' | ||
| 288 | +1.676442 Gtype b'lemma:ptac' | ||
| 289 | +1.663265 O b'lemma:oxyr' | ||
| 290 | +1.660953 Anti b'lemma:anti-rpos' | ||
| 291 | +1.630672 OD b'lemma:0.3' | ||
| 292 | +1.621148 O b'lemma:-rrb-' | ||
| 293 | +1.617178 Anti b'lemma:anti-myc' | ||
| 294 | +1.604063 O b'-1:lemma:stpa' | ||
| 295 | +1.586655 Med b'lemma:glucose' | ||
| 296 | +1.585743 Gversion b'+1:lemma:000913' | ||
| 297 | +1.579174 O b'postag:SYM' | ||
| 298 | +1.578068 Gtype b'-1:lemma:nsrr' | ||
| 299 | +1.574137 Supp b'-1:lemma:+' | ||
| 300 | +1.567060 Gtype b'+1:postag::' | ||
| 301 | +1.563299 Gversion b'postag:CD' | ||
| 302 | +1.544619 Temp b'-1:lemma:37' | ||
| 303 | +1.538602 Med b'+1:lemma:g/l' | ||
| 304 | +1.528286 O b'lemma:to' | ||
| 305 | +1.528286 O b'postag:TO' | ||
| 306 | +1.523324 Gtype b'lemma:\xce\xb4soxs' | ||
| 307 | +1.518247 Technique b'postag:NNP' | ||
| 308 | +1.515066 O b'lemma:Lrp' | ||
| 309 | +1.503810 Supp b'+1:lemma:Deficient' | ||
| 310 | +1.474618 Med b'postag:NNP' | ||
| 311 | +1.470896 O b'lemma:condition' | ||
| 312 | +1.470694 O b'postag:NNS' | ||
| 313 | +1.466882 Vess b'-1:postag:VBN' | ||
| 314 | +1.460777 Substrain b'+1:lemma:phtpg' | ||
| 315 | +1.454367 O b'lemma:Fur' | ||
| 316 | +1.445446 Gtype b'lemma:pk4854' | ||
| 317 | +1.444799 O b'lemma:chip-arca' | ||
| 318 | +1.433832 Air b'-1:postag:CD' | ||
| 319 | +1.433106 Supp b'lemma:of' | ||
| 320 | +1.427368 Supp b'lemma:0.2' | ||
| 321 | +1.416476 Gtype b'postag:-RRB-' | ||
| 322 | +1.416028 Med b'+1:lemma:+' | ||
| 323 | +1.405123 Gtype b'+1:lemma:aerobic' | ||
| 324 | +1.403649 O b'+1:lemma:chip-seq' | ||
| 325 | +1.392465 Vess b'+1:lemma:at' | ||
| 326 | +1.387929 Air b'+1:lemma:%' | ||
| 327 | +1.386557 Air b'lemma:Anaerobic' | ||
| 328 | +1.379418 Air b'lemma:%' | ||
| 329 | + | ||
| 330 | + | ||
| 331 | +Top negative: | ||
| 332 | +0.046237 Technique b'-1:postag:-LRB-' | ||
| 333 | +0.044591 O b'lemma:total' | ||
| 334 | +0.042487 OD b'-1:postag:JJ' | ||
| 335 | +0.041254 Agit b'+1:lemma:at' | ||
| 336 | +0.040829 Air b'-1:lemma:o2' | ||
| 337 | +0.039691 O b'+1:postag:SYM' | ||
| 338 | +0.037763 Air b'-1:lemma:95' | ||
| 339 | +0.037597 Med b'-1:lemma:g/l' | ||
| 340 | +0.034684 Med b'-1:postag::' | ||
| 341 | +0.034326 OD b'lemma:and' | ||
| 342 | +0.031598 Supp b'-1:lemma:ompr' | ||
| 343 | +0.024936 Technique b'postag:NN' | ||
| 344 | +0.024683 O b'lemma:co2' | ||
| 345 | +0.024521 O b'-1:lemma:k-12' | ||
| 346 | +0.023660 O b'lemma:express' | ||
| 347 | +0.023660 O b'+1:lemma:nsrr' | ||
| 348 | +0.021537 OD b'-1:postag:-LRB-' | ||
| 349 | +0.020167 O b'-1:lemma:respiratory' | ||
| 350 | +0.019242 Technique b'-1:postag:NN' | ||
| 351 | +0.017406 O b'+1:postag:-LRB-' | ||
| 352 | +0.015124 O b'lemma:contain' | ||
| 353 | +0.013912 Agit b'-1:postag:DT' | ||
| 354 | +0.013779 O b'+1:lemma:with' | ||
| 355 | +0.011889 Supp b'-1:postag:NN' | ||
| 356 | +0.010468 O b'-1:lemma:no3' | ||
| 357 | +0.007499 O b'postag:VBZ' | ||
| 358 | +0.006399 Temp b'-1:postag:NNS' | ||
| 359 | +0.006118 O b'lemma:%' | ||
| 360 | +0.004379 Med b'-1:lemma:2' | ||
| 361 | +0.003940 OD b'postag:CC' | ||
| 362 | +0.003905 Gtype b'lemma::' | ||
| 363 | +0.003701 O b'-1:lemma:with' | ||
| 364 | +0.003698 Air b'postag:NNP' | ||
| 365 | +0.003581 O b'+1:lemma:20' | ||
| 366 | +0.003278 O b'+1:lemma:wt' | ||
| 367 | +0.003056 Gtype b'-1:postag:NN' | ||
| 368 | +0.003014 O b'-1:postag:VBD' | ||
| 369 | +0.002667 Supp b'-1:lemma:contain' | ||
| 370 | +0.002596 O b'lemma:respiratory' | ||
| 371 | +0.001697 Agit b'postag:IN' | ||
| 372 | +0.001336 O b'-1:lemma:genotype' | ||
| 373 | +0.001218 OD b'+1:postag:-RRB-' | ||
| 374 | +0.001198 O b'lemma:mm' | ||
| 375 | +0.001116 OD b'postag:CD' | ||
| 376 | +0.000945 Med b'lemma:g/l' | ||
| 377 | +0.000825 O b'+1:lemma:total' | ||
| 378 | +0.000744 Air b'+1:lemma:and' | ||
| 379 | +0.000698 Gtype b'-1:lemma:lacz' | ||
| 380 | +0.000535 O b'+1:lemma:anaerobically' | ||
| 381 | +0.000513 O b'-1:lemma:and' | ||
| 382 | +0.000496 O b'+1:lemma:mm' | ||
| 383 | +0.000435 O b'-1:lemma:fructose' | ||
| 384 | +0.000393 O b'lemma:acetate' | ||
| 385 | +0.000297 Gtype b'lemma:wild' | ||
| 386 | +0.000283 Temp b'+1:lemma:.' | ||
| 387 | +0.000283 Temp b'+1:postag:.' | ||
| 388 | +0.000099 Phase b'postag:RB' | ||
| 389 | +0.000088 Supp b'lemma:1mm' | ||
| 390 | +0.000079 O b'+1:lemma:use' | ||
| 391 | +0.000050 Supp b'+1:postag:JJ' | ||
| 392 | +0.000036 Supp b'-1:lemma:1g/l' | ||
| 393 | +0.000026 Supp b'lemma:paraquat' | ||
| 394 | +0.000026 O b'-1:lemma:l2' | ||
| 395 | +0.000025 OD b'lemma:\xce\xb4soxr' | ||
| 396 | +0.000007 pH b'postag:CD' | ||
| 397 | +0.000007 Supp b'lemma:um' | ||
| 398 | +0.000006 Gtype b'lemma:small' | ||
| 399 | +-0.000000 O b'-1:lemma:cra' | ||
| 400 | +-0.000009 O b'+1:lemma:dissolve' | ||
| 401 | +-0.000017 O b'-1:lemma:the' | ||
| 402 | +-0.000043 Supp b'lemma:and' | ||
| 403 | +-0.000046 O b'lemma:\xce\xb4fur' | ||
| 404 | +-0.000085 O b'-1:lemma:rifampicin' | ||
| 405 | +-0.000146 O b'-1:lemma:iptg' | ||
| 406 | +-0.000260 OD b'+1:postag:NNS' | ||
| 407 | +-0.000627 O b'-1:lemma:g/l' | ||
| 408 | +-0.000742 OD b'postag:JJ' | ||
| 409 | +-0.001488 O b'lemma:m63' | ||
| 410 | +-0.003058 Air b'postag:CD' | ||
| 411 | +-0.003448 O b'+1:lemma:phase' | ||
| 412 | +-0.004608 Agit b'postag:NN' | ||
| 413 | +-0.004847 O b'-1:lemma:,' | ||
| 414 | +-0.004847 O b'-1:postag:,' | ||
| 415 | +-0.005037 O b'-1:lemma:ml' | ||
| 416 | +-0.007684 O b'+1:lemma:5' | ||
| 417 | +-0.008395 Air b'+1:postag:-RRB-' | ||
| 418 | +-0.008451 Air b'+1:lemma:-lrb-' | ||
| 419 | +-0.017107 Med b'postag:CD' | ||
| 420 | +-0.017612 Supp b'postag:CD' | ||
| 421 | +-0.018284 O b'+1:lemma:c' | ||
| 422 | +-0.018326 Air b'+1:postag:NN' | ||
| 423 | +-0.018494 O b'+1:lemma:300' | ||
| 424 | +-0.020172 O b'+1:lemma:arginine' | ||
| 425 | +-0.021074 O b'+1:lemma:until' | ||
| 426 | +-0.022065 O b'-1:lemma:n2' | ||
| 427 | +-0.022176 Air b'+1:lemma:-rrb-' | ||
| 428 | +-0.036363 Gtype b'postag:CD' | ||
| 429 | +-0.041102 O b'+1:lemma:rep1' | ||
| 430 | +-0.042847 O b'-1:lemma:e.' | ||
| 431 | +-0.044979 Air b'-1:lemma:-lrb-' | ||
| 432 | +-0.046714 Air b'-1:postag:CC' | ||
| 433 | +-0.058789 O b'-1:lemma:1' | ||
| 434 | +-0.063701 O b'lemma:k-12' | ||
| 435 | +-0.066551 Supp b'+1:lemma:-rrb-' | ||
| 436 | +-0.070646 Anti b'+1:lemma:anti-fur' | ||
| 437 | +-0.073806 OD b'+1:postag:CD' | ||
| 438 | +-0.084658 OD b'+1:postag:-LRB-' | ||
| 439 | +-0.084874 O b'lemma:150' | ||
| 440 | +-0.084874 O b'+1:lemma:mg/ml' | ||
| 441 | +-0.089700 O b'-1:postag:VBN' | ||
| 442 | +-0.098890 O b'lemma:lb' | ||
| 443 | +-0.104646 Technique b'-1:lemma::' | ||
| 444 | +-0.109346 Gtype b'-1:postag:CD' | ||
| 445 | +-0.117060 Med b'-1:postag:NN' | ||
| 446 | +-0.137397 O b'lemma:\xe2\x88\x86' | ||
| 447 | +-0.139038 Med b'+1:postag:IN' | ||
| 448 | +-0.139665 Supp b'postag:CC' | ||
| 449 | +-0.145456 O b'-1:lemma:0.2' | ||
| 450 | +-0.166221 Anti b'+1:postag:JJ' | ||
| 451 | +-0.168662 O b'-1:lemma:30' | ||
| 452 | +-0.170969 Gtype b'+1:lemma:-lrb-' | ||
| 453 | +-0.185496 O b'+1:postag:NNS' | ||
| 454 | +-0.187775 O b'+1:lemma:-rrb-' | ||
| 455 | +-0.189256 O b'lemma:phase' | ||
| 456 | +-0.197532 O b'-1:lemma:~' | ||
| 457 | +-0.198007 Supp b'+1:lemma:rifampicin' | ||
| 458 | +-0.204204 O b'+1:lemma:.' | ||
| 459 | +-0.204204 O b'+1:postag:.' | ||
| 460 | +-0.216763 Supp b'+1:postag:-RRB-' | ||
| 461 | +-0.218250 O b'+1:lemma:%' | ||
| 462 | +-0.224866 O b'lemma:dissolve' | ||
| 463 | +-0.237242 O b'-1:postag:IN' | ||
| 464 | +-0.238328 O b'-1:lemma:of' | ||
| 465 | +-0.240558 O b'+1:lemma:hour' | ||
| 466 | +-0.240999 O b'-1:lemma:-lrb-' | ||
| 467 | +-0.256297 Temp b'+1:lemma:to' | ||
| 468 | +-0.256297 Temp b'+1:postag:TO' | ||
| 469 | +-0.256467 O b'+1:lemma:0.3' | ||
| 470 | +-0.259261 Temp b'postag:JJ' | ||
| 471 | +-0.264304 O b'-1:lemma:from' | ||
| 472 | +-0.278399 O b'lemma:20' | ||
| 473 | +-0.278740 Phase b'-1:lemma:at' | ||
| 474 | +-0.285638 O b'lemma:media' | ||
| 475 | +-0.332297 O b'-1:postag:-LRB-' | ||
| 476 | +-0.344037 O b'-1:lemma:mid-log' | ||
| 477 | +-0.360399 Med b'+1:postag:NN' | ||
| 478 | +-0.369081 O b'+1:postag:IN' | ||
| 479 | +-0.394929 pH b'postag:NN' | ||
| 480 | +-0.422222 O b'lemma:anaerobically' | ||
| 481 | +-0.424296 O b'lemma:fecl2' | ||
| 482 | +-0.437175 O b'+1:postag:-RRB-' | ||
| 483 | +-0.454022 O b'lemma:0.3' | ||
| 484 | +-0.489502 O b'+1:lemma:fecl2' | ||
| 485 | +-0.515212 O b'-1:lemma:rpob' | ||
| 486 | +-0.523695 O b'-1:lemma:ompr' | ||
| 487 | +-0.548908 O b'-1:lemma:od600' | ||
| 488 | +-0.555804 O b'+1:postag:VBG' | ||
| 489 | +-0.560571 O b'-1:lemma:sample' | ||
| 490 | +-0.564990 O b'-1:lemma:37' | ||
| 491 | +-0.571228 O b'-1:lemma:grow' | ||
| 492 | +-0.575388 OD b'+1:postag:NN' | ||
| 493 | +-0.582274 O b'lemma:od600' | ||
| 494 | +-0.590024 Technique b'-1:postag::' | ||
| 495 | +-0.607317 OD b'lemma:-lrb-' | ||
| 496 | +-0.626089 Air b'-1:postag:JJ' | ||
| 497 | +-0.675603 O b'lemma:2h' | ||
| 498 | +-0.675603 O b'-1:lemma:additional' | ||
| 499 | +-0.678009 Supp b'+1:lemma:acetate' | ||
| 500 | +-0.680017 O b'+1:lemma:cell' | ||
| 501 | +-0.707984 O b'lemma:0.1' | ||
| 502 | +-0.736935 O b'lemma:37' | ||
| 503 | +-0.745442 O b'+1:lemma:+' | ||
| 504 | +-0.767826 O b'lemma:0.2' | ||
| 505 | +-0.773161 Temp b'postag:NN' | ||
| 506 | +-0.851338 O b'lemma:wt' | ||
| 507 | +-0.866767 O b'-1:lemma:dissolve' | ||
| 508 | +-0.866767 O b'+1:lemma:methanol' | ||
| 509 | +-0.888840 O b'+1:lemma:g/l' | ||
| 510 | +-0.912059 O b'lemma:mid-log' | ||
| 511 | +-0.950858 O b'-1:postag::' | ||
| 512 | +-0.973355 Anti b'postag:NNP' | ||
| 513 | +-0.986952 O b'lemma:of' | ||
| 514 | +-1.090926 O b'lemma:methanol' | ||
| 515 | +-1.112071 O b'+1:lemma:supplement' | ||
| 516 | +-1.135645 O b'lemma:rifampicin' | ||
| 517 | +-1.140338 O b'-1:postag:VBG' | ||
| 518 | +-1.194026 O b'+1:lemma:at' | ||
| 519 | +-1.228205 O b'-1:lemma:co2' | ||
| 520 | +-1.238990 O b'-1:lemma:nsrr' | ||
| 521 | +-1.291964 OD b'postag:-LRB-' | ||
| 522 | +-1.351756 O b'-1:lemma:IP' | ||
| 523 | +-1.411430 Air b'+1:postag:JJ' | ||
| 524 | +-1.429559 O b'+1:lemma:in' | ||
| 525 | +-1.505998 Supp b'postag:JJ' | ||
| 526 | +-1.647279 Air b'postag:NN' | ||
| 527 | +-1.998332 O b'-1:lemma:2' | ||
| 528 | +-2.129948 O b'+1:lemma:2' | ||
| 529 | +-2.202486 O b'+1:lemma:1' | ||
| 530 | +-3.512875 O b'-1:lemma::' | ||
| 531 | +-3.774844 O b'-1:lemma:_' | ||
| 532 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.24365115413317517, 'c2': 0.017603116029939036} | 4 | +best params:{'c1': 0.18162961741547431, 'c2': 0.010173319055706773} |
| 5 | -best CV score:0.797058241278945 | 5 | +best CV score:0.8000535163011767 |
| 6 | model size: 0.06M | 6 | model size: 0.06M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.7778441635784862 | 8 | +Flat F1: 0.7788313742200469 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 1.000 0.405 0.577 37 | 11 | OD 1.000 0.405 0.577 37 |
| ... | @@ -15,512 +15,524 @@ Flat F1: 0.7778441635784862 | ... | @@ -15,512 +15,524 @@ Flat F1: 0.7778441635784862 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | - Phase 1.000 0.895 0.944 19 | 18 | + Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.780 0.742 0.760 62 | 19 | + Air 0.754 0.742 0.748 62 |
| 20 | Anti 0.571 0.444 0.500 9 | 20 | Anti 0.571 0.444 0.500 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | Gtype 0.863 0.774 0.816 106 | 22 | Gtype 0.863 0.774 0.816 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.818 0.662 0.732 136 | 24 | + Supp 0.820 0.669 0.737 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.847 0.735 0.778 480 | 27 | +avg / total 0.844 0.740 0.779 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -OD -> OD 6.460512 | 31 | +Agit -> Agit 6.428280 |
| 32 | -Agit -> Agit 6.341871 | 32 | +OD -> OD 6.391198 |
| 33 | -Temp -> Temp 5.624129 | 33 | +Temp -> Temp 5.649607 |
| 34 | -Med -> Med 5.402282 | 34 | +Med -> Med 5.539114 |
| 35 | -Anti -> Anti 5.214940 | 35 | +Anti -> Anti 5.303445 |
| 36 | -Air -> Air 4.858980 | 36 | +Air -> Air 5.166643 |
| 37 | -Phase -> Phase 4.544403 | 37 | +O -> O 4.665819 |
| 38 | -Gtype -> Gtype 4.483666 | 38 | +Gversion -> Gversion 4.506373 |
| 39 | -Supp -> Supp 4.372876 | 39 | +Gtype -> Gtype 4.407445 |
| 40 | -Gversion -> Gversion 4.358204 | 40 | +Phase -> Phase 4.396047 |
| 41 | -O -> O 4.356881 | 41 | +Supp -> Supp 4.016861 |
| 42 | -Technique -> Technique 3.828561 | 42 | +Technique -> Technique 3.916964 |
| 43 | -O -> Supp 2.070080 | 43 | +O -> Supp 1.874908 |
| 44 | -Gtype -> Supp 1.938994 | 44 | +pH -> pH 1.860916 |
| 45 | -pH -> pH 1.828748 | 45 | +Air -> O 1.770442 |
| 46 | -Air -> O 1.699192 | 46 | +Gtype -> Supp 1.543348 |
| 47 | -O -> Technique 1.307357 | 47 | +O -> Technique 1.425814 |
| 48 | -Substrain -> Gtype 1.254891 | 48 | +O -> Gtype 1.309373 |
| 49 | -O -> Gtype 1.237193 | 49 | +Substrain -> Gtype 1.304530 |
| 50 | -O -> Temp 0.952632 | 50 | +Technique -> Air 0.870147 |
| 51 | -Med -> O 0.819857 | 51 | +O -> Temp 0.799278 |
| 52 | -OD -> Phase 0.738941 | 52 | +O -> Anti 0.706193 |
| 53 | -Technique -> Air 0.735321 | 53 | +Med -> O 0.658266 |
| 54 | -O -> Anti 0.520896 | 54 | +Temp -> O 0.368124 |
| 55 | -Supp -> O 0.493996 | 55 | +O -> Gversion 0.329037 |
| 56 | -Temp -> O 0.435644 | 56 | +OD -> Phase 0.304771 |
| 57 | -O -> Gversion 0.368943 | 57 | +O -> Med 0.286180 |
| 58 | -Phase -> O 0.362864 | 58 | +Gtype -> pH 0.234567 |
| 59 | -Gtype -> pH 0.340162 | 59 | +Phase -> O 0.219735 |
| 60 | -O -> Med 0.294591 | 60 | +Supp -> O 0.186801 |
| 61 | -Gtype -> Air 0.108303 | 61 | +O -> Strain 0.165838 |
| 62 | -O -> Strain 0.008465 | 62 | +O -> Phase 0.049593 |
| 63 | -Gtype -> O -0.094763 | 63 | +Gtype -> Air 0.047789 |
| 64 | -Gtype -> Anti -0.194733 | 64 | +O -> OD 0.017713 |
| 65 | -OD -> O -0.218649 | 65 | +Technique -> O -0.003305 |
| 66 | -Technique -> pH -0.317427 | 66 | +OD -> Med -0.005961 |
| 67 | -Agit -> O -0.543505 | 67 | +Supp -> Air -0.145259 |
| 68 | -Supp -> Med -0.600692 | 68 | +Gtype -> Med -0.329989 |
| 69 | -Gtype -> OD -0.628749 | 69 | +OD -> O -0.341272 |
| 70 | -O -> Air -0.839621 | 70 | +Gtype -> O -0.347754 |
| 71 | -Substrain -> O -0.911959 | 71 | +Technique -> OD -0.359361 |
| 72 | -Med -> Supp -1.122521 | 72 | +Agit -> O -0.510570 |
| 73 | -Phase -> OD -1.131519 | 73 | +Gtype -> Anti -0.695655 |
| 74 | +Supp -> Med -0.748551 | ||
| 75 | +Gtype -> OD -0.794417 | ||
| 76 | +O -> Air -0.800635 | ||
| 77 | +Substrain -> O -1.117563 | ||
| 78 | +Phase -> OD -1.392334 | ||
| 79 | +Med -> Supp -1.659724 | ||
| 74 | 80 | ||
| 75 | 81 | ||
| 76 | Top unlikely transitions: | 82 | Top unlikely transitions: |
| 77 | -OD -> OD 6.460512 | 83 | +Agit -> Agit 6.428280 |
| 78 | -Agit -> Agit 6.341871 | 84 | +OD -> OD 6.391198 |
| 79 | -Temp -> Temp 5.624129 | 85 | +Temp -> Temp 5.649607 |
| 80 | -Med -> Med 5.402282 | 86 | +Med -> Med 5.539114 |
| 81 | -Anti -> Anti 5.214940 | 87 | +Anti -> Anti 5.303445 |
| 82 | -Air -> Air 4.858980 | 88 | +Air -> Air 5.166643 |
| 83 | -Phase -> Phase 4.544403 | 89 | +O -> O 4.665819 |
| 84 | -Gtype -> Gtype 4.483666 | 90 | +Gversion -> Gversion 4.506373 |
| 85 | -Supp -> Supp 4.372876 | 91 | +Gtype -> Gtype 4.407445 |
| 86 | -Gversion -> Gversion 4.358204 | 92 | +Phase -> Phase 4.396047 |
| 87 | -O -> O 4.356881 | 93 | +Supp -> Supp 4.016861 |
| 88 | -Technique -> Technique 3.828561 | 94 | +Technique -> Technique 3.916964 |
| 89 | -O -> Supp 2.070080 | 95 | +O -> Supp 1.874908 |
| 90 | -Gtype -> Supp 1.938994 | 96 | +pH -> pH 1.860916 |
| 91 | -pH -> pH 1.828748 | 97 | +Air -> O 1.770442 |
| 92 | -Air -> O 1.699192 | 98 | +Gtype -> Supp 1.543348 |
| 93 | -O -> Technique 1.307357 | 99 | +O -> Technique 1.425814 |
| 94 | -Substrain -> Gtype 1.254891 | 100 | +O -> Gtype 1.309373 |
| 95 | -O -> Gtype 1.237193 | 101 | +Substrain -> Gtype 1.304530 |
| 96 | -O -> Temp 0.952632 | 102 | +Technique -> Air 0.870147 |
| 97 | -Med -> O 0.819857 | 103 | +O -> Temp 0.799278 |
| 98 | -OD -> Phase 0.738941 | 104 | +O -> Anti 0.706193 |
| 99 | -Technique -> Air 0.735321 | 105 | +Med -> O 0.658266 |
| 100 | -O -> Anti 0.520896 | 106 | +Temp -> O 0.368124 |
| 101 | -Supp -> O 0.493996 | 107 | +O -> Gversion 0.329037 |
| 102 | -Temp -> O 0.435644 | 108 | +OD -> Phase 0.304771 |
| 103 | -O -> Gversion 0.368943 | 109 | +O -> Med 0.286180 |
| 104 | -Phase -> O 0.362864 | 110 | +Gtype -> pH 0.234567 |
| 105 | -Gtype -> pH 0.340162 | 111 | +Phase -> O 0.219735 |
| 106 | -O -> Med 0.294591 | 112 | +Supp -> O 0.186801 |
| 107 | -Gtype -> Air 0.108303 | 113 | +O -> Strain 0.165838 |
| 108 | -O -> Strain 0.008465 | 114 | +O -> Phase 0.049593 |
| 109 | -Gtype -> O -0.094763 | 115 | +Gtype -> Air 0.047789 |
| 110 | -Gtype -> Anti -0.194733 | 116 | +O -> OD 0.017713 |
| 111 | -OD -> O -0.218649 | 117 | +Technique -> O -0.003305 |
| 112 | -Technique -> pH -0.317427 | 118 | +OD -> Med -0.005961 |
| 113 | -Agit -> O -0.543505 | 119 | +Supp -> Air -0.145259 |
| 114 | -Supp -> Med -0.600692 | 120 | +Gtype -> Med -0.329989 |
| 115 | -Gtype -> OD -0.628749 | 121 | +OD -> O -0.341272 |
| 116 | -O -> Air -0.839621 | 122 | +Gtype -> O -0.347754 |
| 117 | -Substrain -> O -0.911959 | 123 | +Technique -> OD -0.359361 |
| 118 | -Med -> Supp -1.122521 | 124 | +Agit -> O -0.510570 |
| 119 | -Phase -> OD -1.131519 | 125 | +Gtype -> Anti -0.695655 |
| 126 | +Supp -> Med -0.748551 | ||
| 127 | +Gtype -> OD -0.794417 | ||
| 128 | +O -> Air -0.800635 | ||
| 129 | +Substrain -> O -1.117563 | ||
| 130 | +Phase -> OD -1.392334 | ||
| 131 | +Med -> Supp -1.659724 | ||
| 120 | 132 | ||
| 121 | 133 | ||
| 122 | Top positive: | 134 | Top positive: |
| 123 | -7.945473 O b'lemma:_' | 135 | +8.779498 Supp b'lemma:Iron' |
| 124 | -7.412165 Supp b'lemma:Iron' | 136 | +8.304502 O b'lemma:_' |
| 125 | -6.926609 Air b'lemma:anaerobic' | 137 | +7.618690 Phase b'lemma:stationary' |
| 126 | -6.922674 O b'lemma:1' | 138 | +7.484170 Air b'lemma:anaerobic' |
| 127 | -6.590205 Air b'lemma:aerobic' | 139 | +7.354518 O b'lemma:1' |
| 128 | -6.223986 Strain b'lemma:k-12' | 140 | +7.067189 Air b'lemma:aerobic' |
| 129 | -6.187011 Technique b'lemma:ChIP-exo' | 141 | +6.669483 Phase b'lemma:mid-log' |
| 130 | -6.130654 Phase b'lemma:stationary' | 142 | +6.618228 Strain b'lemma:k-12' |
| 131 | -5.864907 Supp b'lemma:nitrate' | 143 | +6.546745 Technique b'lemma:ChIP-exo' |
| 132 | -5.653173 O b'lemma:2' | 144 | +6.382709 Supp b'lemma:nitrate' |
| 133 | -5.610923 O b'lemma:rpob' | 145 | +6.166994 O b'lemma:rpob' |
| 134 | -5.610415 Air b'-1:lemma:ChIP-Seq' | 146 | +5.942129 Technique b'lemma:chipseq' |
| 135 | -5.397732 Phase b'lemma:mid-log' | 147 | +5.857472 Med b'lemma:MOPS' |
| 136 | -5.255269 O b'lemma:3' | 148 | +5.774642 Air b'-1:lemma:ChIP-Seq' |
| 137 | -5.206599 Technique b'lemma:chipseq' | 149 | +5.737667 Substrain b'lemma:mg1655' |
| 138 | -4.960561 Substrain b'lemma:mg1655' | 150 | +5.732281 O b'lemma:2' |
| 139 | -4.914901 O b'postag:IN' | 151 | +5.455707 O b'lemma:3' |
| 140 | -4.746312 Supp b'lemma:pq' | 152 | +5.364542 Supp b'lemma:pq' |
| 141 | -4.579937 Gtype b'lemma:\xce\xb4cra' | 153 | +5.264936 Gtype b'lemma:\xce\xb4cra' |
| 142 | -4.520187 Gtype b'lemma:type' | 154 | +5.213694 Gversion b'lemma:asm584v2' |
| 143 | -4.511014 OD b'lemma:od600' | 155 | +5.194289 O b'-1:lemma:tag' |
| 144 | -4.469574 Gtype b'lemma:flag-tag' | 156 | +5.063868 O b'lemma:\xcf\x8332' |
| 145 | -4.469574 Gtype b'-1:lemma:c-terminal' | 157 | +5.027668 O b'lemma:Custom' |
| 146 | -4.462810 O b'lemma:rep1' | 158 | +4.891622 OD b'lemma:od600' |
| 147 | -4.392739 O b'postag::' | 159 | +4.882911 O b'lemma:rep1' |
| 148 | -4.375670 Gversion b'lemma:asm584v2' | 160 | +4.854545 Gtype b'-1:lemma:\xe2\x88\x86' |
| 149 | -4.369737 O b'lemma:Custom' | 161 | +4.823744 Med b'lemma:LB' |
| 150 | -4.356443 O b'lemma:b' | 162 | +4.814164 Gtype b'+1:lemma:type' |
| 151 | -4.303923 Technique b'lemma:ChIP-Seq' | 163 | +4.802778 Gtype b'lemma:flag-tag' |
| 152 | -4.302917 Med b'lemma:MOPS' | 164 | +4.802778 Gtype b'-1:lemma:c-terminal' |
| 153 | -4.296205 Supp b'lemma:nh4cl' | 165 | +4.765392 O b'postag:IN' |
| 154 | -4.281883 Gtype b'-1:lemma:\xe2\x88\x86' | 166 | +4.744766 O b'lemma:b' |
| 155 | -4.279879 Gtype b'+1:lemma:type' | 167 | +4.740937 Gversion b'lemma:nc' |
| 156 | -4.270631 O b'lemma:rep2' | 168 | +4.733044 O b'lemma:rep2' |
| 157 | -4.239368 Air b'lemma:Aerobic' | 169 | +4.686977 Supp b'+1:lemma:\xc2\xb5m' |
| 158 | -4.132080 Gversion b'lemma:nc' | 170 | +4.648287 Gtype b'lemma:type' |
| 159 | -4.117043 Med b'lemma:lb' | 171 | +4.641760 O b'-1:lemma:ChIP-exo' |
| 160 | -4.108014 Supp b'+1:lemma:\xc2\xb5m' | 172 | +4.637432 Air b'lemma:Aerobic' |
| 161 | -4.076646 O b'lemma:rep3' | 173 | +4.612308 Technique b'lemma:ChIP-Seq' |
| 162 | -4.043095 Gtype b'lemma:arca8myc' | 174 | +4.552359 O b'lemma:rep3' |
| 163 | -4.041495 Supp b'lemma:glucose' | 175 | +4.544430 Supp b'lemma:nh4cl' |
| 164 | -4.033775 O b'lemma:a' | 176 | +4.492332 Med b'lemma:lb' |
| 165 | -4.027421 O b'-1:lemma:tag' | 177 | +4.439803 O b'lemma:Cra' |
| 166 | -4.027011 Med b'lemma:LB' | 178 | +4.427104 Gtype b'lemma:arca8myc' |
| 167 | -4.007935 O b'lemma:Cra' | 179 | +4.360255 O b'lemma:a' |
| 168 | -3.910498 Gtype b'lemma:wt' | 180 | +4.334331 Supp b'lemma:glucose' |
| 169 | -3.905564 O b'-1:lemma:ChIP-exo' | 181 | +4.324045 O b'postag::' |
| 170 | -3.870678 O b'lemma:\xcf\x8332' | 182 | +4.225895 Gtype b'lemma:delta-arca' |
| 171 | -3.727782 Supp b'lemma:acetate' | 183 | +4.196049 OD b'lemma:od450' |
| 172 | -3.697104 Gtype b'lemma:delta-arca' | 184 | +4.164044 Gtype b'lemma:wt' |
| 173 | -3.647724 Technique b'lemma:rna-seq' | 185 | +4.160035 OD b'+1:lemma:stationary' |
| 174 | -3.633897 Supp b'lemma:Fe' | 186 | +4.107066 Supp b'lemma:rifampicin' |
| 175 | -3.575150 Gtype b'lemma:fnr8myc' | 187 | +4.089185 Technique b'lemma:rna-seq' |
| 176 | -3.536159 OD b'lemma:od450' | 188 | +4.023125 Gtype b'lemma:fnr8myc' |
| 177 | -3.488627 Supp b'lemma:rifampicin' | 189 | +3.987616 Supp b'lemma:acetate' |
| 178 | -3.426221 O b'lemma:.' | 190 | +3.959560 Supp b'lemma:Fe' |
| 179 | -3.426221 O b'postag:.' | 191 | +3.767113 O b'-1:lemma:Aerobic' |
| 180 | -3.421248 Technique b'lemma:chip-seq' | 192 | +3.742419 Technique b'lemma:chip-seq' |
| 181 | -3.389912 Air b'postag:RB' | 193 | +3.719024 Supp b'lemma:dpd' |
| 182 | -3.367471 Med b'+1:lemma:0.4' | 194 | +3.697799 Anti b'lemma:none' |
| 183 | -3.358386 Gtype b'lemma:\xe2\x88\x86' | 195 | +3.628511 Gtype b'lemma:\xce\xb4fur' |
| 184 | -3.341657 Supp b'lemma:dpd' | 196 | +3.610358 O b'-1:lemma:0.3-0.35' |
| 185 | -3.311375 Supp b'lemma:no3' | 197 | +3.589450 O b'lemma:.' |
| 186 | -3.301666 Gtype b'lemma:nsrr' | 198 | +3.589450 O b'postag:.' |
| 187 | -3.263607 OD b'+1:lemma:stationary' | 199 | +3.579795 Supp b'lemma:fructose' |
| 188 | -3.256783 O b'-1:lemma:Aerobic' | 200 | +3.551159 Gtype b'lemma:delta-fnr' |
| 189 | -3.217842 Anti b'lemma:none' | 201 | +3.542698 O b'+1:lemma:od600' |
| 190 | -3.181572 Gversion b'-1:lemma:nc' | 202 | +3.524374 O b'lemma:-' |
| 191 | -3.100116 Technique b'lemma:rnaseq' | 203 | +3.524138 Gversion b'-1:lemma:nc' |
| 192 | -3.072172 Gtype b'lemma:\xce\xb4fur' | 204 | +3.508492 Technique b'lemma:rnaseq' |
| 193 | -3.058843 O b'postag:VBN' | 205 | +3.507955 Supp b'lemma:no3' |
| 194 | -3.028102 Anti b'+1:lemma:antibody' | 206 | +3.411452 Temp b'-1:lemma:sample' |
| 195 | -3.018055 Supp b'lemma:arginine' | 207 | +3.356731 Vess b'lemma:flask' |
| 196 | -3.012119 Supp b'+1:lemma:1' | 208 | +3.356731 Vess b'-1:lemma:warm' |
| 197 | -3.009503 Gtype b'lemma:delta-fnr' | 209 | +3.344734 Gtype b'lemma:\xe2\x88\x86' |
| 198 | -2.984566 O b'lemma:CEL' | 210 | +3.342213 Gtype b'lemma:nsrr' |
| 199 | -2.976222 O b'+1:lemma:od600' | 211 | +3.307055 Med b'+1:lemma:0.4' |
| 200 | -2.972362 Supp b'lemma:fructose' | 212 | +3.294711 Anti b'lemma:seqa' |
| 201 | -2.971825 Vess b'lemma:flask' | 213 | +3.198770 Anti b'lemma:anti-myc' |
| 202 | -2.971825 Vess b'-1:lemma:warm' | 214 | +3.181726 Supp b'+1:lemma:1' |
| 203 | -2.946262 Technique b'-1:lemma:IP' | 215 | +3.157564 O b'-1:lemma:type' |
| 204 | -2.917769 Temp b'-1:lemma:sample' | 216 | +3.124717 Technique b'-1:lemma:IP' |
| 205 | -2.914128 Med b'+1:lemma:minimal' | 217 | +3.101009 pH b'lemma:ph5' |
| 206 | -2.847635 Temp b'lemma:\xc2\xb0c' | 218 | +3.101009 pH b'+1:lemma:.5' |
| 207 | -2.845956 O b'-1:lemma:type' | 219 | +3.088003 O b'lemma:CEL' |
| 208 | -2.837114 pH b'lemma:ph5' | 220 | +3.079066 O b'-1:lemma:glucose' |
| 209 | -2.837114 pH b'+1:lemma:.5' | 221 | +3.060659 Temp b'-1:lemma:\xcf\x8332' |
| 210 | -2.822859 Supp b'+1:lemma:2' | 222 | +3.059431 O b'-1:lemma:0.3' |
| 211 | -2.819530 O b'postag:CC' | 223 | +3.049487 O b'-1:lemma:anaerobic' |
| 212 | -2.802486 Gtype b'+1:lemma:with' | 224 | +3.042109 O b'lemma:chip' |
| 213 | -2.796286 Anti b'lemma:seqa' | 225 | +3.030894 Supp b'lemma:arginine' |
| 214 | -2.757551 Gtype b'+1:lemma:pq' | 226 | +3.023592 Gtype b'-1:lemma:ptac' |
| 215 | -2.752041 O b'lemma:chip' | 227 | +2.997640 Med b'lemma:m63' |
| 216 | -2.720379 O b'lemma:-' | 228 | +2.992347 O b'+1:postag:RB' |
| 217 | -2.697742 Gversion b'lemma:u00096' | 229 | +2.983691 O b'postag:VBN' |
| 218 | -2.697742 Gversion b'+1:lemma:.2' | 230 | +2.926938 Strain b'+1:lemma:substr' |
| 219 | -2.686468 Technique b'+1:lemma:chip-exo' | 231 | +2.901956 Supp b'+1:lemma:2' |
| 220 | -2.652892 O b'-1:lemma:0.3-0.35' | 232 | +2.867119 Gtype b'+1:lemma:with' |
| 221 | -2.634884 O b'-1:lemma:glucose' | 233 | +2.866259 Gtype b'lemma:wild-type' |
| 222 | -2.605565 Gversion b'lemma:chip-seq' | 234 | +2.813978 O b'+1:lemma:chip-seq' |
| 223 | -2.589331 Strain b'+1:lemma:substr' | 235 | +2.813217 O b'-1:lemma:lb' |
| 224 | -2.586612 O b'+1:postag:RB' | 236 | +2.811430 Gversion b'lemma:u00096' |
| 225 | -2.568676 O b'postag:DT' | 237 | +2.811430 Gversion b'+1:lemma:.2' |
| 226 | -2.560900 Temp b'-1:lemma:\xcf\x8332' | 238 | +2.805985 Gtype b'lemma:\xce\xb4ompr' |
| 227 | -2.543878 O b'lemma:with' | 239 | +2.805379 Gversion b'lemma:chip-seq' |
| 228 | -2.514778 Med b'lemma:m63' | 240 | +2.791650 Med b'lemma:media' |
| 229 | -2.497949 Anti b'lemma:anti-myc' | 241 | +2.783789 O b'lemma:with' |
| 230 | -2.469343 pH b'lemma:.5' | 242 | +2.762838 O b'lemma:or' |
| 231 | -2.469343 pH b'-1:lemma:ph5' | 243 | +2.761734 Supp b'-1:lemma:Cra' |
| 232 | -2.464961 Gversion b'lemma:000913' | 244 | +2.735714 Supp b'lemma:nacl' |
| 233 | -2.461605 Gtype b'-1:lemma:rpob' | 245 | +2.718227 Anti b'+1:lemma:antibody' |
| 234 | -2.454623 O b'lemma:s' | 246 | +2.689667 O b'lemma:at' |
| 235 | -2.438821 O b'+1:postag:NNP' | 247 | +2.681896 Technique b'+1:lemma:chip-exo' |
| 236 | -2.438655 Gversion b'lemma:.2' | 248 | +2.675618 Gversion b'lemma:.2' |
| 237 | -2.438655 Gversion b'-1:lemma:u00096' | 249 | +2.675618 Gversion b'-1:lemma:u00096' |
| 238 | -2.427395 Technique b'-1:lemma:chip-exo' | 250 | +2.673476 Technique b'-1:lemma:chip-exo' |
| 239 | -2.415443 Anti b'lemma:anti-rpos' | 251 | +2.663534 Anti b'lemma:anti-rpos' |
| 240 | -2.411875 Temp b'-1:lemma:43' | 252 | +2.642331 O b'lemma:s' |
| 241 | -2.410922 Gtype b'-1:lemma:ptac' | 253 | +2.641502 Gtype b'+1:lemma:pq' |
| 242 | -2.405223 Gtype b'lemma:\xce\xb4ompr' | 254 | +2.621220 Gtype b'-1:lemma:rpob' |
| 243 | -2.401826 O b'-1:lemma:anaerobic' | 255 | +2.612960 Air b'lemma:anaerobically' |
| 244 | -2.390761 O b'lemma:or' | 256 | +2.582119 Supp b'+1:lemma:_' |
| 245 | -2.388354 O b'-1:lemma:lb' | 257 | +2.546680 O b'postag:DT' |
| 246 | -2.381109 Gtype b'+1:lemma:flagtag' | 258 | +2.543407 Gversion b'lemma:000913' |
| 247 | -2.347230 Med b'+1:lemma:2.0' | 259 | +2.539879 O b'lemma:oxyr' |
| 248 | -2.324166 Med b'lemma:media' | 260 | +2.525639 O b'+1:postag:NNP' |
| 249 | -2.310748 O b'-1:lemma:0.3' | 261 | +2.495876 Air b'postag:RB' |
| 250 | -2.278494 Supp b'-1:lemma:Cra' | 262 | +2.493741 O b'postag:CC' |
| 251 | -2.263509 O b'+1:lemma:pq' | 263 | +2.488520 Temp b'lemma:\xc2\xb0c' |
| 252 | -2.238545 Supp b'+1:lemma:_' | 264 | +2.472865 Temp b'-1:lemma:43' |
| 253 | -2.229756 O b'-1:lemma:l1' | 265 | +2.468054 Gtype b'+1:lemma:ph5' |
| 254 | -2.226389 Air b'-1:lemma:co2' | 266 | +2.460194 O b'+1:lemma:o.d.' |
| 255 | -2.200525 Gtype b'+1:lemma:aerobic' | 267 | +2.457589 O b'-1:lemma:\xc2\xb0c' |
| 256 | -2.173774 Supp b'lemma:nacl' | 268 | +2.446783 Supp b'-1:lemma:\xc2\xb5m' |
| 257 | -2.171575 Substrain b'+1:lemma:phtpg' | 269 | +2.446748 Med b'-1:lemma:ml' |
| 258 | -2.149631 Supp b'lemma:20' | 270 | +2.432723 pH b'lemma:.5' |
| 259 | -2.120754 Gtype b'lemma:wild-type' | 271 | +2.432723 pH b'-1:lemma:ph5' |
| 260 | -2.119820 Supp b'-1:lemma:\xc2\xb5m' | 272 | +2.429127 O b'+1:lemma:pq' |
| 261 | -2.113883 O b'-1:lemma:\xc2\xb0c' | 273 | +2.426199 Gtype b'+1:lemma:flagtag' |
| 262 | -2.105763 Supp b'-1:lemma:+' | 274 | +2.422501 Temp b'-1:lemma:37' |
| 263 | -2.101125 O b'lemma:oxyr' | 275 | +2.364062 Supp b'-1:lemma:+' |
| 264 | -2.092553 Gtype b'lemma:\xce\xb4soxs' | 276 | +2.359818 O b'lemma:affyexp' |
| 265 | -2.090291 Air b'-1:lemma:-' | 277 | +2.358214 Supp b'lemma:iptg' |
| 266 | -2.081430 Supp b'lemma:Leu' | 278 | +2.345240 Gtype b'lemma:\xce\xb4soxs' |
| 267 | -2.062775 O b'postag:VBG' | 279 | +2.293242 O b'-1:lemma:l1' |
| 268 | -2.055064 O b'-1:lemma:stpa' | 280 | +2.283378 O b'lemma:for' |
| 269 | -2.046935 O b'lemma:condition' | 281 | +2.259276 Supp b'lemma:Leu' |
| 270 | -2.038964 Temp b'lemma:43' | 282 | +2.257438 Air b'-1:lemma:-' |
| 271 | -2.033948 Supp b'lemma:iptg' | 283 | +2.250572 Med b'+1:lemma:minimal' |
| 272 | -2.023886 pH b'+1:postag:CD' | 284 | +2.245090 Supp b'-1:lemma:with' |
| 273 | -2.022782 Gtype b'+1:lemma:ph5' | 285 | +2.236516 Med b'lemma:L' |
| 274 | -2.013337 Temp b'-1:lemma:37' | 286 | +2.236516 Med b'+1:lemma:broth' |
| 275 | -1.955826 Med b'lemma:L' | 287 | +2.194950 Gtype b'lemma:ptac' |
| 276 | -1.955826 Med b'+1:lemma:broth' | 288 | +2.191764 O b'+1:lemma:acetate' |
| 277 | -1.954859 Temp b'lemma:37' | 289 | +2.145434 Med b'+1:lemma:2.0' |
| 278 | -1.927649 O b'+1:lemma:chip-seq' | 290 | +2.144916 O b'-1:lemma:stpa' |
| 279 | -1.919892 Supp b'-1:lemma:with' | 291 | +2.139794 Supp b'lemma:20' |
| 280 | -1.915338 O b'lemma:affyexp' | 292 | +2.138137 Technique b'-1:lemma:input' |
| 281 | -1.911245 Gtype b'lemma:pk4854' | 293 | +2.120690 Supp b'lemma:0.2' |
| 282 | -1.909261 Phase b'-1:lemma:mid-log' | 294 | +2.115282 Air b'lemma:anerobically' |
| 283 | -1.895692 Temp b'+1:lemma:\xc2\xb0c' | 295 | +2.108802 O b'lemma:ompr' |
| 284 | -1.886863 O b'lemma:genotype/variation' | 296 | +2.102080 Air b'-1:lemma:co2' |
| 285 | -1.872821 OD b'-1:lemma:~' | 297 | +2.101933 Gtype b'lemma:deltaseqa' |
| 286 | -1.872507 OD b'lemma:0.3' | 298 | +2.101933 Gtype b'-1:lemma:old' |
| 287 | -1.858566 Med b'+1:lemma:supplement' | 299 | +2.098653 Gtype b'-1:lemma:nsrr' |
| 288 | -1.848644 Gtype b'lemma:ptac' | 300 | +2.094495 O b'lemma:chip-arca' |
| 289 | -1.844359 O b'lemma:Lrp' | 301 | +2.093152 O b'lemma:Lrp' |
| 290 | -1.841048 Med b'+1:lemma:+' | 302 | +2.073057 O b'lemma:soxs' |
| 291 | -1.831366 O b'lemma:culture' | 303 | +2.073057 O b'lemma:soxr' |
| 292 | -1.830571 Gtype b'-1:postag:VBG' | 304 | +2.033842 pH b'+1:postag:CD' |
| 293 | -1.825208 O b'lemma:-rrb-' | 305 | +2.030212 Temp b'lemma:37' |
| 294 | -1.822383 Gtype b'lemma:deltaseqa' | 306 | +2.025024 Temp b'lemma:43' |
| 295 | -1.822383 Gtype b'-1:lemma:old' | 307 | +2.005145 O b'-1:lemma:dpd' |
| 296 | -1.820507 Gtype b'-1:lemma:nsrr' | 308 | +1.996291 Supp b'lemma:methanol' |
| 297 | -1.819979 Gtype b'+1:lemma:_' | 309 | +1.975959 OD b'-1:lemma:~' |
| 298 | -1.784801 Med b'+1:lemma:g/l' | 310 | +1.961870 OD b'lemma:0.3' |
| 299 | -1.781733 Technique b'+1:lemma:rna-seq' | 311 | +1.953650 Supp b'+1:lemma:hour' |
| 300 | -1.778548 Supp b'+1:lemma:Deficient' | 312 | +1.948299 Phase b'-1:lemma:until' |
| 301 | -1.771039 Gversion b'postag:CD' | 313 | +1.945342 Gtype b'+1:lemma:_' |
| 302 | -1.755561 O b'lemma:chip-arca' | 314 | +1.941615 O b'postag:VBG' |
| 303 | -1.740739 Supp b'lemma:methanol' | 315 | +1.938029 OD b'-1:lemma:about' |
| 304 | -1.728483 O b'lemma:ompr' | 316 | +1.930492 O b'lemma:Fur' |
| 305 | -1.717002 Med b'-1:lemma:ml' | 317 | +1.926280 Gtype b'lemma:pk4854' |
| 306 | -1.696842 OD b'lemma:phase' | 318 | +1.918352 Technique b'+1:lemma:rna-seq' |
| 307 | -1.693821 Supp b'lemma:Adenine' | 319 | +1.910079 O b'-1:lemma:media' |
| 308 | -1.677174 Air b'-1:postag::' | 320 | +1.909335 O b'lemma:genotype/variation' |
| 309 | -1.675361 Phase b'-1:lemma:until' | 321 | +1.897683 Med b'lemma:glucose' |
| 310 | -1.672716 Air b'-1:postag:CD' | 322 | +1.894728 O b'lemma:condition' |
| 311 | -1.672711 Med b'lemma:broth' | 323 | +1.886371 Supp b'lemma:Adenine' |
| 312 | -1.672711 Med b'-1:lemma:L' | 324 | +1.881519 Med b'lemma:broth' |
| 313 | -1.672565 Technique b'-1:lemma:input' | 325 | +1.881519 Med b'-1:lemma:L' |
| 314 | -1.666211 Technique b'-1:lemma:_' | 326 | +1.881208 Gtype b'+1:lemma:aerobic' |
| 315 | -1.663572 Air b'lemma:Anaerobic' | 327 | +1.872732 Supp b'+1:lemma:Deficient' |
| 316 | -1.657183 Gtype b'-1:lemma:_' | 328 | +1.854369 O b'lemma:culture' |
| 317 | -1.650921 O b'lemma:Fur' | 329 | +1.844760 O b'+1:lemma:sparging' |
| 318 | -1.650554 Gtype b'-1:postag:VBP' | 330 | +1.836586 Phase b'-1:lemma:mid-log' |
| 319 | -1.647569 Med b'-1:lemma:glucose' | 331 | +1.835743 Gtype b'lemma:WT' |
| 320 | -1.646454 Gtype b'lemma:WT' | 332 | +1.826348 Gversion b'+1:lemma:000913' |
| 321 | -1.642228 Air b'lemma:anaerobically' | 333 | +1.810910 Gtype b'-1:lemma:phtpg' |
| 322 | -1.638505 Supp b'+1:lemma:hour' | 334 | +1.809834 Gtype b'-1:lemma:_' |
| 323 | 335 | ||
| 324 | 336 | ||
| 325 | Top negative: | 337 | Top negative: |
| 326 | -0.003606 Phase b'-1:postag:TO' | 338 | +0.001509 Air b'+1:lemma:70' |
| 327 | -0.003173 O b'+1:lemma:minute' | 339 | +0.001485 O b'-1:lemma:5' |
| 328 | -0.002853 OD b'postag:CC' | 340 | +0.001306 O b'-1:lemma:no3' |
| 329 | -0.002630 Technique b'+1:lemma:-rrb-' | 341 | +0.001230 Air b'-1:postag:RB' |
| 330 | -0.002520 Technique b'+1:postag:-RRB-' | 342 | +0.001224 Med b'-1:lemma:in' |
| 331 | -0.002467 Med b'lemma:m9' | 343 | +0.001140 OD b'-1:postag:VBN' |
| 332 | -0.002337 Air b'+1:postag:-LRB-' | 344 | +0.001060 Technique b'+1:lemma:Anaerobic' |
| 333 | -0.002264 Technique b'+1:lemma:Anaerobic' | 345 | +0.001048 O b'+1:postag:SYM' |
| 334 | -0.002098 Phase b'postag:RB' | 346 | +0.000988 O b'-1:lemma:fnr' |
| 335 | -0.002086 Gtype b'+1:lemma:rna' | 347 | +0.000917 O b'lemma:fructose' |
| 336 | -0.002053 O b'lemma:~' | 348 | +0.000830 O b'+1:lemma:use' |
| 337 | -0.001666 OD b'-1:postag:JJ' | 349 | +0.000649 OD b'+1:postag:VBD' |
| 338 | -0.001084 Gtype b'+1:lemma:chip' | 350 | +0.000635 Gtype b'lemma:input' |
| 339 | -0.001034 Air b'+1:lemma:-lrb-' | 351 | +0.000565 O b'lemma:treatment' |
| 340 | -0.000728 OD b'-1:lemma:to' | 352 | +0.000544 Temp b'+1:postag:VB' |
| 341 | -0.000728 OD b'-1:postag:TO' | 353 | +0.000534 O b'lemma:EB' |
| 342 | -0.000711 O b'-1:lemma:at' | 354 | +0.000477 OD b'+1:postag:VBN' |
| 343 | -0.000709 O b'+1:lemma:_' | 355 | +0.000465 Supp b'-1:lemma:10' |
| 344 | -0.000560 Temp b'+1:postag:VB' | 356 | +0.000457 O b'lemma:~' |
| 345 | -0.000555 Gtype b'lemma:lack' | 357 | +0.000451 Gtype b'lemma:wild' |
| 346 | -0.000388 OD b'postag:VBD' | 358 | +0.000403 Air b'postag:NNP' |
| 347 | -0.000335 Air b'-1:postag:RB' | 359 | +0.000324 Temp b'-1:postag:NN' |
| 348 | -0.000334 OD b'-1:postag:VBN' | 360 | +0.000271 Supp b'+1:lemma:of' |
| 349 | -0.000307 Air b'-1:lemma:95' | 361 | +0.000230 Supp b'-1:lemma:contain' |
| 350 | -0.000306 Anti b'-1:lemma:Custom' | 362 | +0.000161 Gtype b'-1:lemma:small' |
| 351 | -0.000275 O b'-1:postag:VBZ' | 363 | +0.000112 Supp b'+1:lemma:feso4' |
| 352 | -0.000204 Air b'-1:lemma:-lrb-' | 364 | +0.000108 Air b'-1:lemma:aerobically' |
| 353 | -0.000203 Air b'-1:postag:-LRB-' | 365 | +0.000097 Supp b'lemma:um' |
| 354 | -0.000156 Temp b'postag:VB' | 366 | +0.000092 Med b'-1:lemma:m9' |
| 355 | -0.000139 Supp b'+1:lemma:dissolve' | 367 | +0.000070 Temp b'postag:VB' |
| 356 | -0.000138 Gtype b'lemma:ptrc' | 368 | +0.000061 Supp b'-1:lemma:250' |
| 357 | -0.000138 Gtype b'-1:lemma:inducible' | 369 | +0.000056 O b'+1:lemma:_' |
| 358 | -0.000085 Med b'-1:lemma:complete' | 370 | +0.000037 Gtype b'postag::' |
| 359 | -0.000051 OD b'+1:lemma:0.35' | 371 | +0.000032 Phase b'-1:postag:IN' |
| 360 | -0.000048 Temp b'+1:lemma:-rrb-' | 372 | +0.000029 Temp b'lemma:-lrb-' |
| 361 | -0.000043 Air b'-1:lemma:anaerobically' | 373 | +0.000024 Temp b'postag:-LRB-' |
| 362 | -0.000039 OD b'+1:postag:VBN' | 374 | +0.000018 OD b'+1:lemma:0.15' |
| 363 | -0.000034 Temp b'+1:postag:-RRB-' | 375 | +0.000013 Gtype b'lemma:small' |
| 364 | -0.000030 Supp b'-1:postag:VBN' | 376 | +0.000006 O b'lemma:agitation' |
| 365 | -0.000028 OD b'lemma:mg1655' | 377 | +-0.000006 Supp b'+1:lemma:-rrb-' |
| 366 | -0.000023 OD b'+1:lemma:mg1655' | 378 | +-0.000007 Supp b'+1:postag:-RRB-' |
| 367 | -0.000022 OD b'lemma:k-12' | 379 | +-0.000030 O b'+1:lemma:95' |
| 368 | -0.000019 Temp b'lemma:-lrb-' | 380 | +-0.000036 O b'-1:lemma:mid-log' |
| 369 | -0.000017 Temp b'postag:-LRB-' | 381 | +-0.000163 Gversion b'-1:postag:NN' |
| 370 | -0.000016 Air b'lemma:-rrb-' | 382 | +-0.000207 OD b'-1:postag:DT' |
| 371 | -0.000015 Air b'postag:-RRB-' | 383 | +-0.000850 Supp b'+1:lemma:dpd' |
| 372 | -0.000007 Gtype b'lemma:inducible' | 384 | +-0.001166 O b'+1:lemma:o2' |
| 373 | -0.000007 Gtype b'-1:lemma:carrying' | 385 | +-0.001921 Temp b'-1:postag:JJ' |
| 374 | -0.000007 Gtype b'+1:lemma:ptrc' | 386 | +-0.002203 O b'+1:lemma:rep1' |
| 375 | -0.000003 O b'lemma:4' | 387 | +-0.002684 O b'-1:lemma:g/l' |
| 376 | -0.000001 O b'postag:VBZ' | 388 | +-0.003051 O b'-1:lemma:,' |
| 377 | -0.000000 Med b'+1:lemma:,' | 389 | +-0.003051 O b'-1:postag:,' |
| 378 | -0.000000 Med b'+1:postag:,' | 390 | +-0.004416 O b'-1:lemma:until' |
| 379 | --0.000019 O b'-1:lemma:g/l' | 391 | +-0.005028 O b'lemma:lb' |
| 380 | --0.000078 O b'-1:lemma:iptg' | 392 | +-0.006746 O b'-1:lemma:iptg' |
| 381 | --0.000082 O b'+1:lemma:until' | 393 | +-0.008099 O b'lemma:minimal' |
| 382 | --0.000090 Supp b'+1:postag:CD' | 394 | +-0.009386 O b'lemma:glucose' |
| 383 | --0.000137 O b'+1:lemma:phase' | 395 | +-0.009971 Gtype b'+1:lemma:2' |
| 384 | --0.000630 O b'+1:lemma:grow' | 396 | +-0.011912 Med b'-1:postag:CD' |
| 385 | --0.000719 Air b'lemma:,' | 397 | +-0.012108 OD b'+1:postag:NNS' |
| 386 | --0.000719 Air b'postag:,' | 398 | +-0.012515 Air b'-1:lemma:and' |
| 387 | --0.000881 Supp b'-1:postag:NNP' | 399 | +-0.014917 OD b'+1:lemma:0.4' |
| 388 | --0.001151 O b'+1:lemma:95' | 400 | +-0.015462 O b'lemma:co2' |
| 389 | --0.001284 O b'lemma:glucose' | 401 | +-0.017434 O b'lemma:medium' |
| 390 | --0.001441 O b'lemma:anaerobic' | 402 | +-0.017596 O b'+1:lemma:grow' |
| 391 | --0.002285 Supp b'-1:postag:NN' | 403 | +-0.018130 O b'-1:lemma:1' |
| 392 | --0.003211 Air b'-1:lemma:,' | 404 | +-0.019463 Air b'+1:postag:-LRB-' |
| 393 | --0.003211 Air b'-1:postag:,' | 405 | +-0.020969 Air b'-1:lemma:95' |
| 394 | --0.003285 O b'+1:lemma:rep1' | 406 | +-0.026012 Med b'+1:postag:IN' |
| 395 | --0.003344 O b'-1:lemma:n2' | 407 | +-0.029462 Air b'+1:lemma:-rrb-' |
| 396 | --0.004884 Supp b'+1:postag:IN' | 408 | +-0.029964 Med b'+1:postag:NNS' |
| 397 | --0.005691 O b'lemma:grow' | 409 | +-0.030676 Gtype b'-1:postag:CD' |
| 398 | --0.008542 O b'lemma:\xce\xb4fur' | 410 | +-0.030969 OD b'+1:postag:CC' |
| 399 | --0.008810 O b'lemma:30' | 411 | +-0.032789 Air b'postag:CC' |
| 400 | --0.008856 O b'lemma:\xe2\x88\x86' | 412 | +-0.039308 O b'lemma:m63' |
| 401 | --0.016851 Gversion b'+1:postag:NN' | 413 | +-0.039681 O b'-1:lemma:mm' |
| 402 | --0.017577 Agit b'postag:NN' | 414 | +-0.043781 O b'-1:lemma:sample' |
| 403 | --0.019899 OD b'postag:JJ' | 415 | +-0.045727 O b'+1:lemma:5' |
| 404 | --0.021053 Supp b'lemma:and' | 416 | +-0.048720 Gversion b'+1:postag:NN' |
| 405 | --0.035082 Med b'-1:postag:IN' | 417 | +-0.050456 O b'lemma:e.' |
| 406 | --0.037650 O b'+1:lemma:shake' | 418 | +-0.051510 Air b'+1:lemma:-lrb-' |
| 407 | --0.040816 Technique b'-1:lemma::' | 419 | +-0.052744 Phase b'+1:postag:NN' |
| 408 | --0.042661 Air b'-1:postag:VBN' | 420 | +-0.060135 O b'lemma:150' |
| 409 | --0.047406 O b'lemma:e.' | 421 | +-0.060135 O b'+1:lemma:mg/ml' |
| 410 | --0.050232 O b'+1:lemma:300' | 422 | +-0.061483 OD b'+1:postag:CD' |
| 411 | --0.057684 Supp b'postag:CD' | 423 | +-0.061644 Gtype b'postag:CD' |
| 412 | --0.060532 Med b'+1:postag:IN' | 424 | +-0.062527 O b'-1:lemma:o2' |
| 413 | --0.071550 O b'+1:lemma:5' | 425 | +-0.067638 Air b'-1:lemma:or' |
| 414 | --0.074571 Supp b'+1:lemma:-rrb-' | 426 | +-0.070682 O b'-1:lemma:0.1' |
| 415 | --0.077631 O b'-1:postag:VBN' | 427 | +-0.072485 O b'-1:postag:IN' |
| 416 | --0.083084 OD b'+1:postag:CD' | 428 | +-0.072778 Gtype b'-1:postag:NN' |
| 417 | --0.083227 Air b'postag:CD' | 429 | +-0.074033 Air b'-1:postag:CC' |
| 418 | --0.086748 Supp b'+1:postag:-RRB-' | 430 | +-0.074222 Temp b'postag:JJ' |
| 419 | --0.087729 O b'-1:lemma:e.' | 431 | +-0.085943 O b'-1:lemma:e.' |
| 420 | --0.089412 O b'-1:lemma:um' | 432 | +-0.090975 OD b'postag:JJ' |
| 421 | --0.089412 O b'+1:lemma:paraquat' | 433 | +-0.094470 Supp b'+1:postag:VBN' |
| 422 | --0.095031 O b'-1:lemma:,' | 434 | +-0.097464 O b'+1:lemma:antibody' |
| 423 | --0.095031 O b'-1:postag:,' | 435 | +-0.099584 O b'+1:lemma:300' |
| 424 | --0.097514 Anti b'+1:postag:JJ' | 436 | +-0.099687 O b'-1:postag:VBN' |
| 425 | --0.097686 O b'-1:lemma:the' | 437 | +-0.107582 Air b'+1:postag:-RRB-' |
| 426 | --0.115298 OD b'+1:postag:-LRB-' | 438 | +-0.110954 O b'postag:RB' |
| 427 | --0.115560 Phase b'-1:postag:NN' | 439 | +-0.132121 Air b'postag:CD' |
| 428 | --0.117367 Phase b'-1:postag:JJ' | 440 | +-0.148947 O b'-1:lemma:-lrb-' |
| 429 | --0.118533 Supp b'postag:CC' | 441 | +-0.150683 Med b'postag:CD' |
| 430 | --0.118866 Med b'-1:postag:NN' | 442 | +-0.155098 Technique b'-1:lemma::' |
| 431 | --0.119788 O b'+1:postag:NNS' | 443 | +-0.162800 Supp b'lemma:and' |
| 432 | --0.128143 O b'lemma:150' | 444 | +-0.171938 O b'+1:lemma:minimal' |
| 433 | --0.128143 O b'+1:lemma:mg/ml' | 445 | +-0.173189 Supp b'+1:lemma:rifampicin' |
| 434 | --0.128440 Gtype b'postag:CD' | 446 | +-0.173535 O b'lemma:\xe2\x88\x86' |
| 435 | --0.128454 O b'-1:lemma:rifampicin' | 447 | +-0.181287 O b'-1:lemma:ml' |
| 436 | --0.130932 Phase b'-1:lemma:at' | 448 | +-0.195801 O b'+1:lemma:%' |
| 437 | --0.144251 Air b'-1:postag:CC' | 449 | +-0.197661 O b'-1:lemma:30' |
| 438 | --0.152959 O b'+1:lemma:c' | 450 | +-0.202314 O b'lemma:\xce\xb4fur' |
| 439 | --0.153793 O b'+1:lemma:arginine' | 451 | +-0.220334 O b'+1:lemma:or' |
| 440 | --0.155635 O b'+1:lemma:-rrb-' | 452 | +-0.221282 Supp b'postag:CC' |
| 441 | --0.155871 Phase b'+1:postag:NN' | 453 | +-0.230040 O b'lemma:30' |
| 442 | --0.169334 O b'-1:lemma:1' | 454 | +-0.234659 O b'+1:lemma:arginine' |
| 443 | --0.178678 O b'-1:lemma:-lrb-' | 455 | +-0.241611 Anti b'+1:postag:JJ' |
| 444 | --0.185252 O b'-1:lemma:cra' | 456 | +-0.253103 O b'-1:lemma:rifampicin' |
| 445 | --0.188794 Supp b'+1:postag:VBN' | 457 | +-0.268147 O b'+1:lemma:until' |
| 446 | --0.189587 Supp b'-1:lemma:%' | 458 | +-0.276798 O b'-1:lemma:of' |
| 447 | --0.197975 O b'+1:lemma:.' | 459 | +-0.283028 pH b'postag:NN' |
| 448 | --0.197975 O b'+1:postag:.' | 460 | +-0.285848 O b'lemma:aerobically' |
| 449 | --0.206342 O b'-1:postag:IN' | 461 | +-0.308992 O b'+1:lemma:-rrb-' |
| 450 | --0.218582 O b'-1:lemma:of' | 462 | +-0.311262 O b'-1:postag:-LRB-' |
| 451 | --0.228664 O b'-1:lemma:0.2' | 463 | +-0.314602 O b'-1:lemma:from' |
| 452 | --0.243004 O b'lemma:phase' | 464 | +-0.326058 O b'-1:lemma:cra' |
| 453 | --0.245652 Temp b'postag:JJ' | 465 | +-0.332056 O b'+1:lemma:.' |
| 454 | --0.248718 O b'-1:lemma:30' | 466 | +-0.332056 O b'+1:postag:.' |
| 455 | --0.258083 Supp b'+1:lemma:rifampicin' | 467 | +-0.335073 O b'lemma:phase' |
| 456 | --0.265675 O b'-1:lemma:from' | 468 | +-0.341647 Med b'-1:postag:NN' |
| 457 | --0.270538 Anti b'+1:lemma:anti-fur' | 469 | +-0.344072 Med b'+1:postag:NN' |
| 458 | --0.275341 Med b'+1:postag:NN' | 470 | +-0.355271 Temp b'+1:lemma:to' |
| 459 | --0.286886 O b'lemma:20' | 471 | +-0.355271 Temp b'+1:postag:TO' |
| 460 | --0.287653 Med b'postag:CD' | 472 | +-0.379882 O b'+1:postag:IN' |
| 461 | --0.299457 pH b'postag:NN' | 473 | +-0.399275 O b'lemma:od600' |
| 462 | --0.299809 O b'+1:postag:IN' | 474 | +-0.406215 O b'-1:lemma:od600' |
| 463 | --0.304068 O b'-1:postag:-LRB-' | 475 | +-0.417969 O b'+1:postag:NNS' |
| 464 | --0.308718 O b'+1:lemma:%' | 476 | +-0.429718 O b'postag:VBP' |
| 465 | --0.337061 O b'lemma:media' | 477 | +-0.438097 O b'lemma:media' |
| 466 | --0.343972 O b'+1:postag:-RRB-' | 478 | +-0.446126 O b'lemma:anaerobically' |
| 467 | --0.375037 O b'-1:lemma:~' | 479 | +-0.460423 O b'+1:lemma:c' |
| 468 | --0.378855 O b'+1:postag:VBG' | 480 | +-0.472382 O b'lemma:dissolve' |
| 469 | --0.390573 O b'+1:lemma:0.3' | 481 | +-0.479226 O b'-1:lemma:~' |
| 470 | --0.442424 Temp b'+1:lemma:to' | 482 | +-0.487398 OD b'+1:postag:NN' |
| 471 | --0.442424 Temp b'+1:postag:TO' | 483 | +-0.497942 O b'+1:postag:-RRB-' |
| 472 | --0.442791 O b'lemma:dissolve' | 484 | +-0.513460 O b'-1:lemma:0.2' |
| 473 | --0.457125 Air b'-1:postag:JJ' | 485 | +-0.534142 Phase b'-1:lemma:at' |
| 474 | --0.473796 O b'-1:lemma:ml' | 486 | +-0.535921 Temp b'postag:NN' |
| 475 | --0.487814 O b'-1:lemma:grow' | 487 | +-0.546444 O b'lemma:20' |
| 476 | --0.504521 O b'-1:lemma:od600' | 488 | +-0.554159 O b'+1:lemma:\xc2\xb0c' |
| 477 | --0.510322 O b'lemma:anaerobically' | 489 | +-0.568528 Supp b'+1:lemma:acetate' |
| 478 | --0.574504 O b'lemma:0.3' | 490 | +-0.579080 O b'+1:lemma:fecl2' |
| 479 | --0.603912 O b'+1:lemma:hour' | 491 | +-0.580237 O b'+1:lemma:0.3' |
| 480 | --0.607283 O b'lemma:od600' | 492 | +-0.597189 Technique b'-1:postag::' |
| 481 | --0.671305 O b'+1:lemma:+' | 493 | +-0.633040 O b'lemma:0.3' |
| 482 | --0.673609 O b'lemma:fecl2' | 494 | +-0.635311 Air b'-1:postag:JJ' |
| 483 | --0.687238 O b'-1:lemma:sample' | 495 | +-0.639958 O b'+1:lemma:cell' |
| 484 | --0.693028 OD b'+1:postag:NN' | 496 | +-0.642294 Supp b'-1:lemma:%' |
| 485 | --0.699278 Technique b'-1:postag::' | 497 | +-0.674687 O b'-1:lemma:grow' |
| 486 | --0.701848 O b'+1:lemma:fecl2' | 498 | +-0.678680 O b'+1:postag:VBG' |
| 487 | --0.704105 Phase b'postag:JJ' | 499 | +-0.725561 O b'-1:lemma:37' |
| 488 | --0.721360 O b'-1:lemma:37' | 500 | +-0.767934 O b'lemma:of' |
| 489 | --0.751804 O b'lemma:2h' | 501 | +-0.780908 O b'-1:lemma:co2' |
| 490 | --0.751804 O b'-1:lemma:additional' | 502 | +-0.783637 O b'-1:postag::' |
| 491 | --0.765268 O b'+1:lemma:cell' | 503 | +-0.801117 O b'lemma:0.2' |
| 492 | --0.797811 O b'-1:postag:VBG' | 504 | +-0.825901 O b'lemma:37' |
| 493 | --0.812938 OD b'lemma:-lrb-' | 505 | +-0.836319 O b'-1:lemma:rpob' |
| 494 | --0.817055 O b'lemma:37' | 506 | +-0.911234 O b'+1:lemma:hour' |
| 495 | --0.849161 O b'lemma:0.1' | 507 | +-0.911954 O b'lemma:fecl2' |
| 496 | --0.857948 Temp b'postag:NN' | 508 | +-0.962999 O b'lemma:rifampicin' |
| 497 | --0.858109 Supp b'+1:lemma:acetate' | 509 | +-0.978360 O b'lemma:2h' |
| 498 | --0.893857 O b'-1:lemma:rpob' | 510 | +-0.978360 O b'-1:lemma:additional' |
| 499 | --0.908853 O b'lemma:0.2' | 511 | +-0.998803 O b'-1:lemma:dissolve' |
| 500 | --0.910535 O b'lemma:of' | 512 | +-0.998803 O b'+1:lemma:methanol' |
| 501 | --0.917031 O b'+1:lemma:g/l' | 513 | +-1.013445 OD b'lemma:-lrb-' |
| 502 | --0.927240 O b'-1:lemma:dissolve' | 514 | +-1.072784 O b'-1:postag:VBG' |
| 503 | --0.927240 O b'+1:lemma:methanol' | 515 | +-1.079188 O b'+1:lemma:g/l' |
| 504 | --0.952327 O b'-1:postag::' | 516 | +-1.085657 O b'lemma:0.1' |
| 505 | --1.012901 O b'lemma:mid-log' | 517 | +-1.090190 O b'lemma:mid-log' |
| 506 | --1.041464 O b'-1:lemma:ompr' | 518 | +-1.191813 O b'+1:lemma:supplement' |
| 507 | --1.052741 O b'lemma:wt' | 519 | +-1.257824 Anti b'postag:NNP' |
| 508 | --1.080730 Anti b'postag:NNP' | 520 | +-1.260068 O b'+1:lemma:+' |
| 509 | --1.207147 O b'+1:lemma:supplement' | 521 | +-1.276383 OD b'postag:-LRB-' |
| 510 | --1.210841 O b'lemma:methanol' | 522 | +-1.370527 O b'lemma:wt' |
| 511 | --1.241992 Air b'+1:postag:JJ' | 523 | +-1.398724 Phase b'postag:JJ' |
| 512 | --1.248085 O b'lemma:rifampicin' | 524 | +-1.421300 O b'+1:lemma:at' |
| 513 | --1.259918 O b'+1:lemma:at' | 525 | +-1.471212 O b'-1:lemma:IP' |
| 514 | --1.297301 O b'-1:lemma:IP' | 526 | +-1.494485 O b'-1:lemma:ompr' |
| 515 | --1.445280 O b'-1:lemma:nsrr' | 527 | +-1.577503 O b'-1:lemma:nsrr' |
| 516 | --1.572311 O b'+1:lemma:in' | 528 | +-1.592880 Supp b'postag:JJ' |
| 517 | --1.575804 O b'-1:lemma:co2' | 529 | +-1.599977 Air b'+1:postag:JJ' |
| 518 | --1.596289 OD b'postag:-LRB-' | 530 | +-1.682029 Air b'postag:NN' |
| 519 | --1.598275 Supp b'postag:JJ' | 531 | +-1.687804 O b'lemma:methanol' |
| 520 | --1.805996 Air b'postag:NN' | 532 | +-1.731880 O b'+1:lemma:in' |
| 521 | --1.906139 O b'+1:lemma:2' | 533 | +-2.271152 O b'+1:lemma:2' |
| 522 | --2.059834 O b'+1:lemma:1' | 534 | +-2.300463 O b'-1:lemma:2' |
| 523 | --2.164534 O b'-1:lemma:2' | 535 | +-2.728413 O b'+1:lemma:1' |
| 524 | --3.758611 O b'-1:lemma::' | 536 | +-3.852462 O b'-1:lemma:_' |
| 525 | --3.808109 O b'-1:lemma:_' | 537 | +-4.219153 O b'-1:lemma::' |
| 526 | 538 | ... | ... |
CRF/reports/report_Run4_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.19555004078116134, 'c2': 0.013719557943369584} | ||
| 5 | +best CV score:0.8266077920368616 | ||
| 6 | +model size: 0.11M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.8150979684771513 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.789 0.405 0.536 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 1.000 0.909 0.952 22 | ||
| 14 | + Med 0.893 0.877 0.885 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.810 0.758 0.783 62 | ||
| 20 | + Anti 1.000 0.667 0.800 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.937 0.840 0.886 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.853 0.684 0.759 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.882 0.767 0.815 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 7.029011 | ||
| 32 | +Agit -> Agit 6.826413 | ||
| 33 | +Temp -> Temp 5.979472 | ||
| 34 | +Med -> Med 5.720420 | ||
| 35 | +Anti -> Anti 5.293877 | ||
| 36 | +Gversion -> Gversion 4.696471 | ||
| 37 | +Technique -> Technique 4.642372 | ||
| 38 | +Air -> Air 4.554023 | ||
| 39 | +Supp -> Supp 4.536382 | ||
| 40 | +Phase -> Phase 4.521590 | ||
| 41 | +Gtype -> Gtype 4.384473 | ||
| 42 | +O -> O 3.790788 | ||
| 43 | +pH -> pH 2.512302 | ||
| 44 | +Gtype -> Supp 1.227863 | ||
| 45 | +O -> Supp 1.192139 | ||
| 46 | +O -> Technique 0.934775 | ||
| 47 | +O -> Gtype 0.662404 | ||
| 48 | +Substrain -> Gtype 0.296928 | ||
| 49 | +Med -> O 0.185994 | ||
| 50 | +O -> Anti 0.184766 | ||
| 51 | +Air -> O 0.174165 | ||
| 52 | +Temp -> O 0.096665 | ||
| 53 | +O -> Gversion 0.076653 | ||
| 54 | +O -> Temp 0.057678 | ||
| 55 | +OD -> Phase 0.022845 | ||
| 56 | +Technique -> Air 0.001578 | ||
| 57 | +O -> Strain 0.000001 | ||
| 58 | +O -> Med -0.054605 | ||
| 59 | +Technique -> pH -0.057365 | ||
| 60 | +Supp -> O -0.119271 | ||
| 61 | +Anti -> O -0.138393 | ||
| 62 | +Supp -> Technique -0.159198 | ||
| 63 | +O -> OD -0.170727 | ||
| 64 | +Supp -> Med -0.220567 | ||
| 65 | +Phase -> OD -0.414455 | ||
| 66 | +Air -> Temp -0.424565 | ||
| 67 | +OD -> Air -0.495373 | ||
| 68 | +Gtype -> Anti -0.639969 | ||
| 69 | +Agit -> O -0.781636 | ||
| 70 | +Technique -> O -0.863862 | ||
| 71 | +Gtype -> O -0.926865 | ||
| 72 | +OD -> O -1.090238 | ||
| 73 | +Substrain -> O -1.190917 | ||
| 74 | +Med -> Supp -1.321707 | ||
| 75 | +O -> Air -1.398663 | ||
| 76 | + | ||
| 77 | + | ||
| 78 | +Top unlikely transitions: | ||
| 79 | +OD -> OD 7.029011 | ||
| 80 | +Agit -> Agit 6.826413 | ||
| 81 | +Temp -> Temp 5.979472 | ||
| 82 | +Med -> Med 5.720420 | ||
| 83 | +Anti -> Anti 5.293877 | ||
| 84 | +Gversion -> Gversion 4.696471 | ||
| 85 | +Technique -> Technique 4.642372 | ||
| 86 | +Air -> Air 4.554023 | ||
| 87 | +Supp -> Supp 4.536382 | ||
| 88 | +Phase -> Phase 4.521590 | ||
| 89 | +Gtype -> Gtype 4.384473 | ||
| 90 | +O -> O 3.790788 | ||
| 91 | +pH -> pH 2.512302 | ||
| 92 | +Gtype -> Supp 1.227863 | ||
| 93 | +O -> Supp 1.192139 | ||
| 94 | +O -> Technique 0.934775 | ||
| 95 | +O -> Gtype 0.662404 | ||
| 96 | +Substrain -> Gtype 0.296928 | ||
| 97 | +Med -> O 0.185994 | ||
| 98 | +O -> Anti 0.184766 | ||
| 99 | +Air -> O 0.174165 | ||
| 100 | +Temp -> O 0.096665 | ||
| 101 | +O -> Gversion 0.076653 | ||
| 102 | +O -> Temp 0.057678 | ||
| 103 | +OD -> Phase 0.022845 | ||
| 104 | +Technique -> Air 0.001578 | ||
| 105 | +O -> Strain 0.000001 | ||
| 106 | +O -> Med -0.054605 | ||
| 107 | +Technique -> pH -0.057365 | ||
| 108 | +Supp -> O -0.119271 | ||
| 109 | +Anti -> O -0.138393 | ||
| 110 | +Supp -> Technique -0.159198 | ||
| 111 | +O -> OD -0.170727 | ||
| 112 | +Supp -> Med -0.220567 | ||
| 113 | +Phase -> OD -0.414455 | ||
| 114 | +Air -> Temp -0.424565 | ||
| 115 | +OD -> Air -0.495373 | ||
| 116 | +Gtype -> Anti -0.639969 | ||
| 117 | +Agit -> O -0.781636 | ||
| 118 | +Technique -> O -0.863862 | ||
| 119 | +Gtype -> O -0.926865 | ||
| 120 | +OD -> O -1.090238 | ||
| 121 | +Substrain -> O -1.190917 | ||
| 122 | +Med -> Supp -1.321707 | ||
| 123 | +O -> Air -1.398663 | ||
| 124 | + | ||
| 125 | + | ||
| 126 | +Top positive: | ||
| 127 | +5.312005 O b'word[:2]:re' | ||
| 128 | +4.884582 Technique b'word[:2]:Ch' | ||
| 129 | +4.406858 Air b'lemma:anaerobic' | ||
| 130 | +3.944633 O b'postag::' | ||
| 131 | +3.862898 O b'lemma:1' | ||
| 132 | +3.862898 O b'word:1' | ||
| 133 | +3.693885 O b'word[:1]:S' | ||
| 134 | +3.634278 O b'postag:IN' | ||
| 135 | +3.455038 Air b'word[:2]:Ae' | ||
| 136 | +3.455038 Air b'word:Aerobic' | ||
| 137 | +3.425015 Technique b'word[:2]:RN' | ||
| 138 | +3.411467 O b'word[:2]:Rp' | ||
| 139 | +3.351922 Gtype b'word[:1]:\xce\x94' | ||
| 140 | +3.295787 Gtype b'word[:2]:cr' | ||
| 141 | +3.209157 OD b'word[:1]:O' | ||
| 142 | +3.145528 Gtype b'word[:2]:Fl' | ||
| 143 | +3.124141 O b'lemma:_' | ||
| 144 | +3.124141 O b'word[:1]:_' | ||
| 145 | +3.124141 O b'word:_' | ||
| 146 | +3.093107 Air b'postag:RB' | ||
| 147 | +3.052912 O b'+1:postag:RB' | ||
| 148 | +2.979721 O b'word:A' | ||
| 149 | +2.971788 O b'-1:lemma:tag' | ||
| 150 | +2.882253 O b'lemma:3' | ||
| 151 | +2.882253 O b'word:3' | ||
| 152 | +2.855255 O b'word[:1]:G' | ||
| 153 | +2.826283 O b'lemma:2' | ||
| 154 | +2.826283 O b'word:2' | ||
| 155 | +2.801121 Phase b'lemma:stationary' | ||
| 156 | +2.801121 Phase b'word:stationary' | ||
| 157 | +2.742452 Gtype b'word[:1]:d' | ||
| 158 | +2.729707 Air b'word[:1]:A' | ||
| 159 | +2.725212 Supp b'-1:word:Cra' | ||
| 160 | +2.626064 Supp b'lemma:arginine' | ||
| 161 | +2.509102 O b'-1:word:Aerobic' | ||
| 162 | +2.466965 O b'word[:2]:ge' | ||
| 163 | +2.441206 Supp b'+1:word:hours' | ||
| 164 | +2.439697 O b'word[:2]:or' | ||
| 165 | +2.414611 O b'lemma:a' | ||
| 166 | +2.383495 O b'lemma:.' | ||
| 167 | +2.383495 O b'postag:.' | ||
| 168 | +2.383495 O b'word:.' | ||
| 169 | +2.376885 Supp b'word[:1]:I' | ||
| 170 | +2.372488 O b'+1:word:ChIP-Seq' | ||
| 171 | +2.332104 Air b'word[:2]:an' | ||
| 172 | +2.319866 O b'-1:word:tag' | ||
| 173 | +2.286706 O b'word[:1]:B' | ||
| 174 | +2.264178 Temp b'word[:1]:3' | ||
| 175 | +2.232768 Technique b'lemma:ChIP-exo' | ||
| 176 | +2.217911 Temp b'-1:word:sample' | ||
| 177 | +2.211263 O b'postag:CC' | ||
| 178 | +2.209541 O b'word[:1]:C' | ||
| 179 | +2.191226 Supp b'word[:2]:Fe' | ||
| 180 | +2.181901 Supp b'lemma:nitrate' | ||
| 181 | +2.181901 Supp b'word[:2]:ni' | ||
| 182 | +2.181901 Supp b'word:nitrate' | ||
| 183 | +2.175597 O b'-1:lemma:lb' | ||
| 184 | +2.161370 Air b'word[:2]:An' | ||
| 185 | +2.161370 Air b'word:Anaerobic' | ||
| 186 | +2.146764 Temp b'-1:lemma:sample' | ||
| 187 | +2.122014 O b'word[:2]:Cu' | ||
| 188 | +2.100150 OD b'word[:2]:OD' | ||
| 189 | +2.097281 O b'lemma:with' | ||
| 190 | +2.097281 O b'word:with' | ||
| 191 | +2.096745 O b'-1:lemma:anaerobic' | ||
| 192 | +2.095524 O b'lemma:-' | ||
| 193 | +2.095524 O b'word:-' | ||
| 194 | +2.085444 Gtype b'lemma:wt' | ||
| 195 | +2.076545 Gtype b'word[:1]:W' | ||
| 196 | +2.074067 O b'postag:VBN' | ||
| 197 | +2.042662 Gversion b'lemma:chip-seq' | ||
| 198 | +2.032616 Gtype b'lemma:arca8myc' | ||
| 199 | +2.032616 Gtype b'word:ArcA8myc' | ||
| 200 | +2.019776 Gversion b'word[:2]:00' | ||
| 201 | +1.980973 O b'postag:DT' | ||
| 202 | +1.968660 Gversion b'-1:lemma:nc' | ||
| 203 | +1.968660 Gversion b'-1:word:NC' | ||
| 204 | +1.961531 Med b'word[:1]:M' | ||
| 205 | +1.921062 O b'word[:2]:ch' | ||
| 206 | +1.893301 Gversion b'word:ChIP-Seq' | ||
| 207 | +1.885602 Med b'word[:1]:L' | ||
| 208 | +1.878552 O b'isLower' | ||
| 209 | +1.865095 Gtype b'lemma:type' | ||
| 210 | +1.865095 Gtype b'word[:2]:ty' | ||
| 211 | +1.865095 Gtype b'word:type' | ||
| 212 | +1.850010 Supp b'word[:2]:gl' | ||
| 213 | +1.837123 Phase b'lemma:mid-log' | ||
| 214 | +1.837123 Phase b'word:mid-log' | ||
| 215 | +1.811977 Supp b'lemma:Iron' | ||
| 216 | +1.811977 Supp b'word[:2]:Ir' | ||
| 217 | +1.811977 Supp b'word:Iron' | ||
| 218 | +1.811977 Supp b'+1:word:Deficient' | ||
| 219 | +1.797891 Anti b'word[:2]:an' | ||
| 220 | +1.792147 O b'+1:lemma:od600' | ||
| 221 | +1.792147 O b'+1:word:OD600' | ||
| 222 | +1.788559 Med b'lemma:MOPS' | ||
| 223 | +1.788559 Med b'word[:2]:MO' | ||
| 224 | +1.788559 Med b'word:MOPS' | ||
| 225 | +1.766167 Strain b'+1:lemma:substr' | ||
| 226 | +1.766167 Strain b'+1:word:substr' | ||
| 227 | +1.752330 O b'word[:2]:Cr' | ||
| 228 | +1.752330 O b'word:Cra' | ||
| 229 | +1.749824 O b'+1:postag:NNP' | ||
| 230 | +1.679832 Gtype b'-1:postag:VBG' | ||
| 231 | +1.660773 Air b'-1:lemma:co2' | ||
| 232 | +1.660773 Air b'-1:word:CO2' | ||
| 233 | +1.660308 Supp b'+1:lemma:\xc2\xb5m' | ||
| 234 | +1.660308 Supp b'+1:word:\xc2\xb5M' | ||
| 235 | +1.651105 Air b'+1:postag:IN' | ||
| 236 | +1.650444 O b'word[:1]:E' | ||
| 237 | +1.641207 O b'lemma:at' | ||
| 238 | +1.630939 Supp b'word[:1]:1' | ||
| 239 | +1.629832 Gtype b'lemma:flag-tag' | ||
| 240 | +1.629832 Gtype b'-1:lemma:c-terminal' | ||
| 241 | +1.629832 Gtype b'word:Flag-tag' | ||
| 242 | +1.629832 Gtype b'-1:word:C-terminal' | ||
| 243 | +1.622707 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 244 | +1.622707 Gtype b'-1:word:\xe2\x88\x86' | ||
| 245 | +1.612203 Gtype b'word[:2]:de' | ||
| 246 | +1.564079 Supp b'lemma:nh4cl' | ||
| 247 | +1.564079 Supp b'word[:2]:NH' | ||
| 248 | +1.561438 OD b'+1:lemma:stationary' | ||
| 249 | +1.561438 OD b'+1:word:stationary' | ||
| 250 | +1.553871 Technique b'word[:1]:C' | ||
| 251 | +1.517787 Supp b'+1:lemma:1' | ||
| 252 | +1.517787 Supp b'+1:word:1' | ||
| 253 | +1.515416 Supp b'lemma:pq' | ||
| 254 | +1.515416 Supp b'word[:2]:PQ' | ||
| 255 | +1.515416 Supp b'word:PQ' | ||
| 256 | +1.510927 O b'word[:2]:Pu' | ||
| 257 | +1.483322 Vess b'lemma:flask' | ||
| 258 | +1.483322 Vess b'-1:lemma:warm' | ||
| 259 | +1.483322 Vess b'word[:2]:fl' | ||
| 260 | +1.483322 Vess b'word:flask' | ||
| 261 | +1.483322 Vess b'-1:word:warmed' | ||
| 262 | +1.475753 Technique b'symb' | ||
| 263 | +1.469180 O b'word[:1]:T' | ||
| 264 | +1.460811 Gversion b'lemma:asm584v2' | ||
| 265 | +1.460811 Gversion b'word[:2]:AS' | ||
| 266 | +1.460811 Gversion b'word:ASM584v2' | ||
| 267 | +1.446236 Anti b'+1:lemma:antibody' | ||
| 268 | +1.446236 Anti b'+1:word:antibody' | ||
| 269 | +1.444397 Air b'word[:1]:a' | ||
| 270 | +1.443964 Gtype b'word[:1]:w' | ||
| 271 | +1.416989 Gtype b'hGreek' | ||
| 272 | +1.397052 Substrain b'lemma:mg1655' | ||
| 273 | +1.397052 Substrain b'word[:2]:MG' | ||
| 274 | +1.397052 Substrain b'word:MG1655' | ||
| 275 | +1.394402 O b'lemma:\xcf\x8332' | ||
| 276 | +1.394402 O b'word[:1]:\xcf\x83' | ||
| 277 | +1.394402 O b'word[:2]:\xcf\x833' | ||
| 278 | +1.394402 O b'word:\xcf\x8332' | ||
| 279 | +1.377208 O b'word[:1]:R' | ||
| 280 | +1.375050 Med b'+1:lemma:0.4' | ||
| 281 | +1.375050 Med b'+1:word:0.4' | ||
| 282 | +1.364759 O b'lemma:Custom' | ||
| 283 | +1.364759 O b'word:Custom' | ||
| 284 | +1.360005 O b'word[:2]:fo' | ||
| 285 | +1.350754 Supp b'lemma:rifampicin' | ||
| 286 | +1.350754 Supp b'word:rifampicin' | ||
| 287 | +1.344579 Strain b'word[:1]:K' | ||
| 288 | +1.343710 Supp b'word[:2]:ri' | ||
| 289 | +1.340304 pH b'lemma:ph5' | ||
| 290 | +1.340304 pH b'+1:lemma:.5' | ||
| 291 | +1.340304 pH b'word:pH5' | ||
| 292 | +1.340304 pH b'+1:word:.5' | ||
| 293 | +1.337816 Gtype b'lemma:nsrr' | ||
| 294 | +1.337816 Gtype b'word[:2]:Ns' | ||
| 295 | +1.337816 Gtype b'word:NsrR' | ||
| 296 | +1.326904 Strain b'lemma:k-12' | ||
| 297 | +1.326904 Strain b'word[:2]:K-' | ||
| 298 | +1.326904 Strain b'word:K-12' | ||
| 299 | +1.314361 Supp b'+1:lemma:2' | ||
| 300 | +1.314361 Supp b'+1:word:2' | ||
| 301 | +1.308459 Med b'word[:2]:LB' | ||
| 302 | +1.308459 Med b'word:LB' | ||
| 303 | +1.298260 Gtype b'symb' | ||
| 304 | +1.294311 O b'+1:lemma:pq' | ||
| 305 | +1.294311 O b'+1:word:PQ' | ||
| 306 | +1.294271 Substrain b'word[:1]:M' | ||
| 307 | +1.290578 Gtype b'-1:postag:VBP' | ||
| 308 | +1.283956 Gversion b'word[:2]:Ch' | ||
| 309 | +1.268071 Gtype b'postag:JJ' | ||
| 310 | +1.261557 O b'-1:lemma:0.3-0.35' | ||
| 311 | +1.261557 O b'-1:word:0.3-0.35' | ||
| 312 | +1.259366 O b'lemma:b' | ||
| 313 | +1.259366 O b'word:B' | ||
| 314 | +1.257660 O b'-1:lemma:glucose' | ||
| 315 | +1.257660 O b'-1:word:glucose' | ||
| 316 | +1.256368 O b'+1:lemma:nacl' | ||
| 317 | +1.256368 O b'+1:word:NaCl' | ||
| 318 | +1.250169 O b'lemma:rpob' | ||
| 319 | +1.250169 O b'word:RpoB' | ||
| 320 | +1.248890 O b'word:Lrp' | ||
| 321 | +1.243321 Med b'+1:lemma:g/l' | ||
| 322 | +1.243321 Med b'+1:word:g/L' | ||
| 323 | +1.239040 pH b'+1:postag:CD' | ||
| 324 | +1.232026 O b'lemma:delta' | ||
| 325 | +1.232026 O b'word:delta' | ||
| 326 | +1.230236 O b'word[:1]:H' | ||
| 327 | + | ||
| 328 | + | ||
| 329 | +Top negative: | ||
| 330 | +-0.068713 Med b'-1:postag:CD' | ||
| 331 | +-0.070898 pH b'isLower' | ||
| 332 | +-0.071980 O b'lemma:dpd' | ||
| 333 | +-0.071980 O b'word[:2]:DP' | ||
| 334 | +-0.071980 O b'word:DPD' | ||
| 335 | +-0.072232 O b'-1:lemma:of' | ||
| 336 | +-0.072232 O b'-1:word:of' | ||
| 337 | +-0.075191 O b'-1:lemma:o2' | ||
| 338 | +-0.075191 O b'-1:word:O2' | ||
| 339 | +-0.078769 Phase b'+1:postag:NN' | ||
| 340 | +-0.079557 Supp b'-1:postag:VBG' | ||
| 341 | +-0.079633 Air b'-1:postag:VBN' | ||
| 342 | +-0.083786 Air b'postag:CC' | ||
| 343 | +-0.087096 O b'word[:2]:OD' | ||
| 344 | +-0.093025 Supp b'postag:CD' | ||
| 345 | +-0.093410 O b'word[:2]:20' | ||
| 346 | +-0.097736 O b'+1:lemma:arginine' | ||
| 347 | +-0.099182 O b'word[:1]:l' | ||
| 348 | +-0.103765 Temp b'postag:NN' | ||
| 349 | +-0.104490 O b'-1:postag:-LRB-' | ||
| 350 | +-0.105330 O b'+1:lemma:fecl2' | ||
| 351 | +-0.105330 O b'+1:word:FeCl2' | ||
| 352 | +-0.105938 Air b'-1:postag:CC' | ||
| 353 | +-0.107646 O b'-1:word:OmpR' | ||
| 354 | +-0.109102 O b'+1:lemma:\xc2\xb0c' | ||
| 355 | +-0.109102 O b'+1:word:\xc2\xb0C' | ||
| 356 | +-0.112420 Air b'postag:-RRB-' | ||
| 357 | +-0.112420 Air b'word[:2]:-R' | ||
| 358 | +-0.117390 Air b'isLower' | ||
| 359 | +-0.117817 O b'-1:lemma:IP' | ||
| 360 | +-0.117817 O b'-1:word:IP' | ||
| 361 | +-0.119059 Anti b'+1:lemma:anti-fur' | ||
| 362 | +-0.119059 Anti b'+1:word:anti-Fur' | ||
| 363 | +-0.120171 O b'word[:1]:g' | ||
| 364 | +-0.122244 Technique b'isNumber' | ||
| 365 | +-0.123373 O b'lemma:of' | ||
| 366 | +-0.123373 O b'word[:2]:of' | ||
| 367 | +-0.123373 O b'word:of' | ||
| 368 | +-0.125903 O b'+1:postag:IN' | ||
| 369 | +-0.127562 O b'+1:lemma:c' | ||
| 370 | +-0.128049 OD b'postag:CD' | ||
| 371 | +-0.128910 Gtype b'postag:NNP' | ||
| 372 | +-0.131123 O b'lemma:anaerobically' | ||
| 373 | +-0.131123 O b'word:anaerobically' | ||
| 374 | +-0.133893 Supp b'word[:2]:mi' | ||
| 375 | +-0.136181 O b'-1:word:the' | ||
| 376 | +-0.136609 O b'-1:lemma:od600' | ||
| 377 | +-0.136609 O b'-1:word:OD600' | ||
| 378 | +-0.137723 O b'+1:lemma:+' | ||
| 379 | +-0.137723 O b'+1:word:+' | ||
| 380 | +-0.138435 O b'word[:1]:F' | ||
| 381 | +-0.140881 O b'word[:2]:0.' | ||
| 382 | +-0.141470 Air b'symb' | ||
| 383 | +-0.141558 O b'word[:1]:p' | ||
| 384 | +-0.142135 O b'lemma:150' | ||
| 385 | +-0.142135 O b'+1:lemma:mg/ml' | ||
| 386 | +-0.142135 O b'word[:2]:15' | ||
| 387 | +-0.142135 O b'word:150' | ||
| 388 | +-0.142135 O b'+1:word:mg/mL' | ||
| 389 | +-0.143733 Phase b'-1:word:at' | ||
| 390 | +-0.143958 O b'-1:lemma:iptg' | ||
| 391 | +-0.143958 O b'-1:word:IPTG' | ||
| 392 | +-0.145720 Phase b'-1:lemma:at' | ||
| 393 | +-0.148058 OD b'+1:lemma:~' | ||
| 394 | +-0.148058 OD b'+1:word:~' | ||
| 395 | +-0.154564 Anti b'symb' | ||
| 396 | +-0.168424 O b'+1:lemma:-rrb-' | ||
| 397 | +-0.168424 O b'+1:word:-RRB-' | ||
| 398 | +-0.171070 OD b'+1:postag:CD' | ||
| 399 | +-0.178172 Air b'-1:lemma:or' | ||
| 400 | +-0.178172 Air b'-1:word:or' | ||
| 401 | +-0.183332 O b'-1:postag:VBN' | ||
| 402 | +-0.185846 O b'lemma:20' | ||
| 403 | +-0.185846 O b'word:20' | ||
| 404 | +-0.187116 O b'-1:postag:IN' | ||
| 405 | +-0.187838 Gtype b'-1:lemma:,' | ||
| 406 | +-0.187838 Gtype b'-1:postag:,' | ||
| 407 | +-0.187838 Gtype b'-1:word:,' | ||
| 408 | +-0.197654 OD b'lemma:~' | ||
| 409 | +-0.197654 OD b'word[:1]:~' | ||
| 410 | +-0.197654 OD b'word:~' | ||
| 411 | +-0.209004 O b'lemma:phase' | ||
| 412 | +-0.209004 O b'word:phase' | ||
| 413 | +-0.232938 O b'word[:2]:mg' | ||
| 414 | +-0.241910 O b'lemma:37' | ||
| 415 | +-0.241910 O b'word[:2]:37' | ||
| 416 | +-0.241910 O b'word:37' | ||
| 417 | +-0.256827 O b'+1:lemma:.' | ||
| 418 | +-0.256827 O b'+1:postag:.' | ||
| 419 | +-0.256827 O b'+1:word:.' | ||
| 420 | +-0.258887 O b'+1:postag:-RRB-' | ||
| 421 | +-0.260688 O b'word[:1]:K' | ||
| 422 | +-0.271025 Temp b'hGreek' | ||
| 423 | +-0.272963 O b'+1:lemma:cell' | ||
| 424 | +-0.279619 O b'-1:lemma:rpob' | ||
| 425 | +-0.279619 O b'-1:word:RpoB' | ||
| 426 | +-0.282042 O b'lemma:2h' | ||
| 427 | +-0.282042 O b'-1:lemma:additional' | ||
| 428 | +-0.282042 O b'word[:2]:2h' | ||
| 429 | +-0.282042 O b'word:2h' | ||
| 430 | +-0.282042 O b'-1:word:additional' | ||
| 431 | +-0.307901 O b'word[:1]:m' | ||
| 432 | +-0.310789 O b'+1:word:cells' | ||
| 433 | +-0.312898 Technique b'isLower' | ||
| 434 | +-0.323122 Supp b'+1:postag:VBN' | ||
| 435 | +-0.336111 Gtype b'lemma:delta' | ||
| 436 | +-0.336111 Gtype b'word:delta' | ||
| 437 | +-0.338083 O b'-1:lemma:37' | ||
| 438 | +-0.338083 O b'-1:word:37' | ||
| 439 | +-0.363134 O b'word[:1]:N' | ||
| 440 | +-0.365622 Supp b'isUpper' | ||
| 441 | +-0.371038 Temp b'+1:lemma:to' | ||
| 442 | +-0.371038 Temp b'+1:postag:TO' | ||
| 443 | +-0.371038 Temp b'+1:word:to' | ||
| 444 | +-0.375663 O b'lemma:methanol' | ||
| 445 | +-0.375663 O b'word:methanol' | ||
| 446 | +-0.386821 O b'+1:word:C' | ||
| 447 | +-0.390549 O b'word[:2]:Fe' | ||
| 448 | +-0.398822 O b'+1:postag:NNS' | ||
| 449 | +-0.400605 O b'+1:lemma:hour' | ||
| 450 | +-0.402617 OD b'postag:IN' | ||
| 451 | +-0.405062 Med b'+1:postag:NN' | ||
| 452 | +-0.406038 O b'-1:lemma:nsrr' | ||
| 453 | +-0.406038 O b'-1:word:NsrR' | ||
| 454 | +-0.414701 O b'-1:lemma:ompr' | ||
| 455 | +-0.416003 Gtype b'isNumber' | ||
| 456 | +-0.429137 O b'word[:2]:gl' | ||
| 457 | +-0.433599 O b'-1:lemma:grow' | ||
| 458 | +-0.446189 Supp b'word[:2]:an' | ||
| 459 | +-0.449818 Temp b'isLower' | ||
| 460 | +-0.453449 Supp b'-1:lemma:%' | ||
| 461 | +-0.453449 Supp b'-1:word:%' | ||
| 462 | +-0.479179 Med b'-1:postag:IN' | ||
| 463 | +-0.488851 O b'word[:2]:ri' | ||
| 464 | +-0.490659 O b'word[:2]:me' | ||
| 465 | +-0.500177 Med b'-1:postag:NN' | ||
| 466 | +-0.509290 O b'word[:2]:ce' | ||
| 467 | +-0.522634 O b'postag:VBP' | ||
| 468 | +-0.532399 Med b'+1:postag:IN' | ||
| 469 | +-0.539071 O b'+1:lemma:supplement' | ||
| 470 | +-0.539071 O b'+1:word:supplemented' | ||
| 471 | +-0.539739 O b'lemma:rifampicin' | ||
| 472 | +-0.539739 O b'word:rifampicin' | ||
| 473 | +-0.552871 O b'+1:lemma:g/l' | ||
| 474 | +-0.552871 O b'+1:word:g/L' | ||
| 475 | +-0.560634 Agit b'hUpper' | ||
| 476 | +-0.560634 Agit b'hLower' | ||
| 477 | +-0.562608 O b'-1:lemma:dissolve' | ||
| 478 | +-0.562608 O b'+1:lemma:methanol' | ||
| 479 | +-0.562608 O b'-1:word:dissolved' | ||
| 480 | +-0.562608 O b'+1:word:methanol' | ||
| 481 | +-0.619514 Air b'-1:postag:JJ' | ||
| 482 | +-0.625491 Phase b'postag:JJ' | ||
| 483 | +-0.625812 O b'word[:1]:d' | ||
| 484 | +-0.649550 Supp b'word[:1]:C' | ||
| 485 | +-0.703665 Phase b'hUpper' | ||
| 486 | +-0.703665 Phase b'hLower' | ||
| 487 | +-0.716840 O b'+1:lemma:at' | ||
| 488 | +-0.716840 O b'+1:word:at' | ||
| 489 | +-0.763556 Phase b'-1:postag:JJ' | ||
| 490 | +-0.787727 O b'lemma:mid-log' | ||
| 491 | +-0.787727 O b'word:mid-log' | ||
| 492 | +-0.797424 Anti b'postag:NNP' | ||
| 493 | +-0.811067 O b'lemma:wt' | ||
| 494 | +-0.815501 O b'-1:postag:VBG' | ||
| 495 | +-0.817040 O b'word[:1]:0' | ||
| 496 | +-0.819358 O b'postag:RB' | ||
| 497 | +-0.827170 O b'-1:lemma:co2' | ||
| 498 | +-0.827170 O b'-1:word:CO2' | ||
| 499 | +-0.854780 OD b'isNumber' | ||
| 500 | +-0.880817 O b'+1:postag:VBG' | ||
| 501 | +-0.904661 OD b'+1:postag:NN' | ||
| 502 | +-0.945300 O b'+1:lemma:in' | ||
| 503 | +-0.945300 O b'+1:word:in' | ||
| 504 | +-0.951737 O b'+1:lemma:2' | ||
| 505 | +-0.951737 O b'+1:word:2' | ||
| 506 | +-0.992231 Air b'postag:NN' | ||
| 507 | +-1.005360 O b'word:cells' | ||
| 508 | +-1.012629 O b'word[:1]:\xce\x94' | ||
| 509 | +-1.013888 Med b'symb' | ||
| 510 | +-1.045981 O b'+1:lemma:1' | ||
| 511 | +-1.045981 O b'+1:word:1' | ||
| 512 | +-1.053560 O b'-1:lemma:2' | ||
| 513 | +-1.053560 O b'-1:word:2' | ||
| 514 | +-1.102339 Gtype b'word[:1]:C' | ||
| 515 | +-1.167989 Gversion b'isLower' | ||
| 516 | +-1.221456 Gtype b'isUpper' | ||
| 517 | +-1.317978 O b'-1:postag::' | ||
| 518 | +-1.332231 Supp b'symb' | ||
| 519 | +-1.384191 Supp b'postag:JJ' | ||
| 520 | +-1.468390 O b'word[:1]:P' | ||
| 521 | +-1.498430 O b'word[:2]:Ch' | ||
| 522 | +-1.650068 Technique b'postag:NN' | ||
| 523 | +-1.692161 O b'+1:word:hours' | ||
| 524 | +-2.120503 O b'-1:lemma::' | ||
| 525 | +-2.120503 O b'-1:word::' | ||
| 526 | +-2.146800 Supp b'hGreek' | ||
| 527 | +-2.229078 O b'-1:lemma:_' | ||
| 528 | +-2.229078 O b'-1:word:_' | ||
| 529 | +-3.855247 OD b'word[:1]:-' | ||
| 530 | + |
CRF/reports/report_Run4_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.08401658210095098, 'c2': 0.01884625069711085} | ||
| 5 | +best CV score:0.7971532567919597 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7859098898539817 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.803 0.860 0.831 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.444 0.615 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.863 0.774 0.816 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.865 0.662 0.750 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.865 0.740 0.786 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.618083 | ||
| 32 | +OD -> OD 5.963729 | ||
| 33 | +Anti -> Anti 5.607797 | ||
| 34 | +Temp -> Temp 5.545821 | ||
| 35 | +Med -> Med 5.260331 | ||
| 36 | +Air -> Air 4.806253 | ||
| 37 | +Gversion -> Gversion 4.687833 | ||
| 38 | +O -> O 4.630219 | ||
| 39 | +Phase -> Phase 4.602318 | ||
| 40 | +Gtype -> Gtype 4.461602 | ||
| 41 | +Supp -> Supp 4.065962 | ||
| 42 | +Technique -> Technique 3.763491 | ||
| 43 | +pH -> pH 2.471906 | ||
| 44 | +O -> Supp 1.921146 | ||
| 45 | +Substrain -> Gtype 1.817014 | ||
| 46 | +Gtype -> Supp 1.706501 | ||
| 47 | +O -> Gtype 1.385338 | ||
| 48 | +O -> Technique 1.373124 | ||
| 49 | +Air -> O 1.263736 | ||
| 50 | +Technique -> Air 0.981438 | ||
| 51 | +O -> Temp 0.947656 | ||
| 52 | +O -> Anti 0.881240 | ||
| 53 | +O -> Gversion 0.510967 | ||
| 54 | +Gtype -> pH 0.475746 | ||
| 55 | +Med -> O 0.383498 | ||
| 56 | +Gtype -> Air 0.370305 | ||
| 57 | +Phase -> O 0.334011 | ||
| 58 | +O -> Strain 0.302672 | ||
| 59 | +OD -> Phase 0.207286 | ||
| 60 | +Temp -> O 0.148085 | ||
| 61 | +O -> Med 0.134972 | ||
| 62 | +O -> pH 0.068234 | ||
| 63 | +O -> Phase 0.059435 | ||
| 64 | +Supp -> O 0.022057 | ||
| 65 | +O -> Vess 0.017629 | ||
| 66 | +Phase -> Air 0.013801 | ||
| 67 | +Supp -> Phase -0.000010 | ||
| 68 | +Phase -> Technique -0.000094 | ||
| 69 | +O -> OD -0.000142 | ||
| 70 | +Gversion -> Air -0.000827 | ||
| 71 | +Air -> Phase -0.032287 | ||
| 72 | +Anti -> Gtype -0.056186 | ||
| 73 | +Supp -> Temp -0.140218 | ||
| 74 | +Technique -> O -0.163065 | ||
| 75 | +Med -> Air -0.167050 | ||
| 76 | +Supp -> Anti -0.172664 | ||
| 77 | +Anti -> OD -0.203224 | ||
| 78 | +Gtype -> O -0.264978 | ||
| 79 | +Supp -> Gversion -0.273317 | ||
| 80 | +Temp -> Med -0.300017 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Med -> O 0.383498 | ||
| 85 | +Gtype -> Air 0.370305 | ||
| 86 | +Phase -> O 0.334011 | ||
| 87 | +O -> Strain 0.302672 | ||
| 88 | +OD -> Phase 0.207286 | ||
| 89 | +Temp -> O 0.148085 | ||
| 90 | +O -> Med 0.134972 | ||
| 91 | +O -> pH 0.068234 | ||
| 92 | +O -> Phase 0.059435 | ||
| 93 | +Supp -> O 0.022057 | ||
| 94 | +O -> Vess 0.017629 | ||
| 95 | +Phase -> Air 0.013801 | ||
| 96 | +Supp -> Phase -0.000010 | ||
| 97 | +Phase -> Technique -0.000094 | ||
| 98 | +O -> OD -0.000142 | ||
| 99 | +Gversion -> Air -0.000827 | ||
| 100 | +Air -> Phase -0.032287 | ||
| 101 | +Anti -> Gtype -0.056186 | ||
| 102 | +Supp -> Temp -0.140218 | ||
| 103 | +Technique -> O -0.163065 | ||
| 104 | +Med -> Air -0.167050 | ||
| 105 | +Supp -> Anti -0.172664 | ||
| 106 | +Anti -> OD -0.203224 | ||
| 107 | +Gtype -> O -0.264978 | ||
| 108 | +Supp -> Gversion -0.273317 | ||
| 109 | +Temp -> Med -0.300017 | ||
| 110 | +Gtype -> Gversion -0.322045 | ||
| 111 | +Supp -> Technique -0.339816 | ||
| 112 | +Air -> Med -0.378155 | ||
| 113 | +Supp -> OD -0.429402 | ||
| 114 | +Supp -> Air -0.446692 | ||
| 115 | +OD -> Gtype -0.457057 | ||
| 116 | +Supp -> Gtype -0.465532 | ||
| 117 | +Air -> Supp -0.485627 | ||
| 118 | +OD -> Med -0.597226 | ||
| 119 | +Gtype -> Anti -0.605601 | ||
| 120 | +OD -> Air -0.642908 | ||
| 121 | +Agit -> O -0.654857 | ||
| 122 | +Air -> OD -0.667036 | ||
| 123 | +Gtype -> Med -0.685203 | ||
| 124 | +OD -> O -0.817999 | ||
| 125 | +Technique -> OD -0.835801 | ||
| 126 | +O -> Air -0.855078 | ||
| 127 | +Technique -> pH -0.981502 | ||
| 128 | +Technique -> Gtype -0.984976 | ||
| 129 | +Supp -> Med -1.097285 | ||
| 130 | +Substrain -> O -1.099208 | ||
| 131 | +Gtype -> OD -1.114446 | ||
| 132 | +Med -> Supp -1.496574 | ||
| 133 | +Phase -> OD -1.695254 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +8.123739 O b'lemma:_' | ||
| 138 | +6.810504 Phase b'lemma:stationary' | ||
| 139 | +6.641654 O b'lemma:1' | ||
| 140 | +6.403325 Supp b'lemma:Iron' | ||
| 141 | +6.186494 Air b'lemma:anaerobic' | ||
| 142 | +6.121179 Technique b'lemma:ChIP-exo' | ||
| 143 | +6.115918 Strain b'lemma:k-12' | ||
| 144 | +6.089855 Air b'lemma:aerobic' | ||
| 145 | +5.817542 Phase b'lemma:mid-log' | ||
| 146 | +5.738043 O b'lemma:rpob' | ||
| 147 | +5.580039 O b'lemma:2' | ||
| 148 | +5.561019 Technique b'lemma:chipseq' | ||
| 149 | +5.375911 Air b'-1:lemma:ChIP-Seq' | ||
| 150 | +5.253286 Supp b'lemma:pq' | ||
| 151 | +5.023770 O b'lemma:3' | ||
| 152 | +4.993878 Substrain b'lemma:mg1655' | ||
| 153 | +4.982089 O b'-1:lemma:tag' | ||
| 154 | +4.964173 O b'postag:IN' | ||
| 155 | +4.938595 Gversion b'lemma:asm584v2' | ||
| 156 | +4.926165 Supp b'lemma:nitrate' | ||
| 157 | +4.785605 Gtype b'lemma:\xce\xb4cra' | ||
| 158 | +4.768006 Supp b'lemma:nh4cl' | ||
| 159 | +4.718684 O b'lemma:rep1' | ||
| 160 | +4.670907 Gtype b'lemma:flag-tag' | ||
| 161 | +4.670907 Gtype b'-1:lemma:c-terminal' | ||
| 162 | +4.606839 Supp b'lemma:glucose' | ||
| 163 | +4.553992 O b'lemma:Cra' | ||
| 164 | +4.544271 Supp b'+1:lemma:\xc2\xb5m' | ||
| 165 | +4.491246 Gtype b'lemma:arca8myc' | ||
| 166 | +4.483151 O b'lemma:rep2' | ||
| 167 | +4.433079 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 168 | +4.339017 Med b'lemma:MOPS' | ||
| 169 | +4.311202 Air b'lemma:Aerobic' | ||
| 170 | +4.296372 O b'lemma:rep3' | ||
| 171 | +4.261737 O b'lemma:\xcf\x8332' | ||
| 172 | +4.226976 O b'lemma:Custom' | ||
| 173 | +4.195337 O b'lemma:b' | ||
| 174 | +4.188524 Med b'lemma:LB' | ||
| 175 | +4.172139 Supp b'lemma:dpd' | ||
| 176 | +4.089549 Med b'lemma:lb' | ||
| 177 | +4.079376 O b'-1:lemma:ChIP-exo' | ||
| 178 | +4.036897 Supp b'lemma:acetate' | ||
| 179 | +4.018214 Gtype b'lemma:wt' | ||
| 180 | +4.015668 Technique b'lemma:rna-seq' | ||
| 181 | +3.920242 Gtype b'lemma:delta-arca' | ||
| 182 | +3.910529 Gversion b'lemma:nc' | ||
| 183 | +3.899136 O b'lemma:a' | ||
| 184 | +3.895888 Gtype b'+1:lemma:type' | ||
| 185 | +3.885009 O b'postag::' | ||
| 186 | +3.855692 Gtype b'lemma:type' | ||
| 187 | +3.834701 Supp b'lemma:no3' | ||
| 188 | +3.819349 OD b'lemma:od600' | ||
| 189 | +3.817994 Supp b'lemma:Fe' | ||
| 190 | +3.765429 Anti b'lemma:none' | ||
| 191 | +3.748597 Gtype b'lemma:fnr8myc' | ||
| 192 | +3.746700 Technique b'lemma:chip-seq' | ||
| 193 | +3.731504 O b'-1:lemma:Aerobic' | ||
| 194 | +3.682782 O b'lemma:.' | ||
| 195 | +3.682782 O b'postag:.' | ||
| 196 | +3.604002 OD b'lemma:od450' | ||
| 197 | +3.566627 Technique b'lemma:ChIP-Seq' | ||
| 198 | +3.529137 O b'lemma:CEL' | ||
| 199 | +3.522238 Supp b'lemma:fructose' | ||
| 200 | +3.519152 Anti b'lemma:seqa' | ||
| 201 | +3.519022 O b'lemma:-' | ||
| 202 | +3.511099 Technique b'lemma:rnaseq' | ||
| 203 | +3.493325 Supp b'+1:lemma:Deficient' | ||
| 204 | +3.455879 Gtype b'lemma:\xe2\x88\x86' | ||
| 205 | +3.419995 Air b'postag:RB' | ||
| 206 | +3.414096 Med b'+1:lemma:0.4' | ||
| 207 | +3.352804 O b'+1:lemma:od600' | ||
| 208 | +3.347175 Gtype b'lemma:delta-fnr' | ||
| 209 | +3.308709 Gversion b'lemma:chip-seq' | ||
| 210 | +3.285099 Supp b'+1:lemma:1' | ||
| 211 | +3.229589 Gtype b'lemma:\xce\xb4fur' | ||
| 212 | +3.161898 Supp b'lemma:arginine' | ||
| 213 | +3.139896 Gtype b'lemma:nsrr' | ||
| 214 | +3.136958 Vess b'lemma:flask' | ||
| 215 | +3.136958 Vess b'-1:lemma:warm' | ||
| 216 | +3.129325 Med b'lemma:m63' | ||
| 217 | +3.128400 Gtype b'+1:lemma:with' | ||
| 218 | +3.125627 pH b'lemma:ph5' | ||
| 219 | +3.125627 pH b'+1:lemma:.5' | ||
| 220 | +3.125247 Supp b'lemma:rifampicin' | ||
| 221 | +3.103906 O b'+1:postag:RB' | ||
| 222 | +3.094719 Gversion b'lemma:000913' | ||
| 223 | +3.087516 O b'-1:lemma:anaerobic' | ||
| 224 | +3.071486 Gtype b'lemma:wild-type' | ||
| 225 | +3.045037 O b'-1:lemma:0.3-0.35' | ||
| 226 | +3.040572 Supp b'+1:lemma:2' | ||
| 227 | +3.014672 O b'postag:VBN' | ||
| 228 | +3.012836 Supp b'-1:lemma:Cra' | ||
| 229 | +3.011017 Gversion b'-1:lemma:nc' | ||
| 230 | +2.965942 O b'-1:lemma:glucose' | ||
| 231 | +2.965565 Supp b'+1:lemma:hour' | ||
| 232 | +2.961946 Anti b'lemma:anti-myc' | ||
| 233 | +2.924402 O b'-1:lemma:lb' | ||
| 234 | +2.922240 Strain b'+1:lemma:substr' | ||
| 235 | +2.919534 O b'lemma:affyexp' | ||
| 236 | +2.903005 O b'lemma:for' | ||
| 237 | +2.879508 Technique b'-1:lemma:IP' | ||
| 238 | +2.872556 O b'lemma:with' | ||
| 239 | +2.842720 O b'-1:lemma:type' | ||
| 240 | +2.828833 Gversion b'lemma:u00096' | ||
| 241 | +2.828833 Gversion b'+1:lemma:.2' | ||
| 242 | +2.821257 Anti b'+1:lemma:antibody' | ||
| 243 | +2.802148 Gversion b'lemma:.2' | ||
| 244 | +2.802148 Gversion b'-1:lemma:u00096' | ||
| 245 | +2.791973 Gtype b'-1:lemma:ptac' | ||
| 246 | +2.785654 O b'lemma:chip' | ||
| 247 | +2.777328 O b'lemma:oxyr' | ||
| 248 | +2.767449 O b'lemma:s' | ||
| 249 | +2.762984 Med b'+1:lemma:2.0' | ||
| 250 | +2.701150 Temp b'lemma:\xc2\xb0c' | ||
| 251 | +2.700498 Temp b'-1:lemma:43' | ||
| 252 | +2.698132 Gtype b'lemma:\xce\xb4soxs' | ||
| 253 | +2.696529 OD b'+1:lemma:stationary' | ||
| 254 | +2.695658 O b'lemma:or' | ||
| 255 | +2.694898 O b'postag:CC' | ||
| 256 | +2.692159 O b'-1:lemma:stpa' | ||
| 257 | +2.668311 O b'lemma:ompr' | ||
| 258 | +2.643579 Supp b'lemma:nacl' | ||
| 259 | +2.630322 O b'lemma:chip-arca' | ||
| 260 | +2.625439 Supp b'+1:lemma:_' | ||
| 261 | +2.617277 Med b'-1:lemma:ml' | ||
| 262 | +2.616109 Gtype b'lemma:\xce\xb4ompr' | ||
| 263 | +2.581776 Temp b'lemma:43' | ||
| 264 | +2.528601 Temp b'-1:lemma:sample' | ||
| 265 | +2.520928 O b'lemma:Lrp' | ||
| 266 | +2.506536 Gtype b'lemma:WT' | ||
| 267 | +2.496575 Gtype b'lemma:ptac' | ||
| 268 | +2.489191 O b'+1:lemma:chip-seq' | ||
| 269 | +2.488069 O b'+1:lemma:o.d.' | ||
| 270 | +2.478372 Technique b'-1:lemma:chip-exo' | ||
| 271 | +2.471197 Gtype b'lemma:pk4854' | ||
| 272 | +2.470284 Gtype b'+1:lemma:ph5' | ||
| 273 | +2.425178 Temp b'-1:lemma:\xcf\x8332' | ||
| 274 | +2.394241 Gtype b'+1:lemma:pq' | ||
| 275 | +2.390337 Supp b'-1:lemma:+' | ||
| 276 | +2.379949 O b'-1:lemma:l1' | ||
| 277 | +2.373863 Gtype b'lemma:deltaseqa' | ||
| 278 | +2.373863 Gtype b'-1:lemma:old' | ||
| 279 | +2.362861 O b'+1:lemma:pq' | ||
| 280 | +2.344951 pH b'lemma:.5' | ||
| 281 | +2.344951 pH b'-1:lemma:ph5' | ||
| 282 | +2.343944 O b'lemma:purr' | ||
| 283 | +2.340182 O b'postag:DT' | ||
| 284 | +2.330847 Med b'+1:lemma:minimal' | ||
| 285 | +2.321541 Supp b'lemma:Leu' | ||
| 286 | +2.318395 O b'lemma:argr' | ||
| 287 | +2.311924 Technique b'+1:lemma:chip-exo' | ||
| 288 | +2.309581 Gtype b'+1:lemma:flagtag' | ||
| 289 | +2.296616 Technique b'-1:lemma:input' | ||
| 290 | +2.290860 Temp b'-1:lemma:37' | ||
| 291 | +2.268695 pH b'+1:postag:CD' | ||
| 292 | +2.260677 Air b'-1:lemma:-' | ||
| 293 | +2.258589 O b'lemma:Fur' | ||
| 294 | +2.242051 Gtype b'-1:lemma:rpob' | ||
| 295 | +2.232930 Substrain b'+1:lemma:phtpg' | ||
| 296 | +2.209727 O b'+1:lemma:mid-log' | ||
| 297 | +2.203454 O b'+1:lemma:sparging' | ||
| 298 | +2.197358 Anti b'lemma:anti-rpos' | ||
| 299 | +2.189715 Temp b'lemma:37' | ||
| 300 | +2.177841 Med b'lemma:glucose' | ||
| 301 | +2.177663 Supp b'lemma:iptg' | ||
| 302 | +2.156759 Phase b'+1:lemma:for' | ||
| 303 | +2.146515 Gtype b'-1:lemma:nsrr' | ||
| 304 | +2.145729 O b'lemma:soxs' | ||
| 305 | +2.145729 O b'lemma:soxr' | ||
| 306 | +2.116627 Med b'lemma:L' | ||
| 307 | +2.116627 Med b'+1:lemma:broth' | ||
| 308 | +2.108116 Gtype b'+1:lemma:_' | ||
| 309 | +2.105252 O b'+1:lemma:anti-fur' | ||
| 310 | +2.101969 O b'-1:lemma:dpd' | ||
| 311 | +2.101790 O b'postag:SYM' | ||
| 312 | +2.101328 O b'postag:VBG' | ||
| 313 | +2.099930 O b'-1:lemma:\xc2\xb0c' | ||
| 314 | +2.098829 Air b'lemma:anaerobically' | ||
| 315 | +2.098434 Supp b'-1:lemma:\xc2\xb5m' | ||
| 316 | +2.096819 Gtype b'+1:lemma:aerobic' | ||
| 317 | +2.094813 Supp b'lemma:Adenine' | ||
| 318 | +2.088323 O b'lemma:2-3' | ||
| 319 | +2.075369 O b'lemma:at' | ||
| 320 | +2.068102 Vess b'-1:postag:VBN' | ||
| 321 | +2.054291 O b'-1:lemma:0.3' | ||
| 322 | +2.053277 Supp b'lemma:20' | ||
| 323 | +2.013209 Air b'lemma:Anaerobic' | ||
| 324 | +2.012548 Air b'lemma:anerobically' | ||
| 325 | +1.999409 Gtype b'lemma:\xce\xb4soxr' | ||
| 326 | +1.981344 O b'+1:postag:NNP' | ||
| 327 | +1.973476 Med b'postag:NNP' | ||
| 328 | +1.946249 Gtype b'lemma:\xce\xb4oxyr' | ||
| 329 | +1.946126 Phase b'-1:lemma:until' | ||
| 330 | +1.942530 Supp b'-1:lemma:with' | ||
| 331 | +1.936299 O b'lemma:genotype/variation' | ||
| 332 | +1.930729 Temp b'-1:lemma:30' | ||
| 333 | +1.927186 O b'lemma:chip-fnr' | ||
| 334 | +1.924213 Gtype b'-1:postag:VBG' | ||
| 335 | +1.924060 Temp b'+1:lemma:\xc2\xb0c' | ||
| 336 | +1.915381 Technique b'-1:lemma:_' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +0.000026 O b'-1:postag:-RRB-' | ||
| 341 | +0.000013 Anti b'lemma:polyclonal' | ||
| 342 | +0.000013 Gtype b'+1:lemma:lacx74/ptg2' | ||
| 343 | +0.000013 O b'lemma:ga' | ||
| 344 | +0.000000 O b'lemma:Deficient' | ||
| 345 | +-0.000007 O b'+1:lemma:pahse' | ||
| 346 | +-0.000008 O b'-1:lemma:chip-exo' | ||
| 347 | +-0.000010 Supp b'+1:lemma:-rrb-' | ||
| 348 | +-0.000010 Supp b'+1:postag:-RRB-' | ||
| 349 | +-0.000013 O b'+1:lemma:delta' | ||
| 350 | +-0.000025 O b'lemma:pahse' | ||
| 351 | +-0.000026 Gversion b'-1:postag:NN' | ||
| 352 | +-0.000058 O b'+1:lemma:phase' | ||
| 353 | +-0.000081 OD b'postag:NNS' | ||
| 354 | +-0.000302 O b'-1:lemma:delta' | ||
| 355 | +-0.000325 O b'+1:lemma:dissolve' | ||
| 356 | +-0.000441 O b'-1:postag:DT' | ||
| 357 | +-0.001613 O b'lemma:10' | ||
| 358 | +-0.002653 Med b'-1:postag:CD' | ||
| 359 | +-0.007301 OD b'+1:postag:NNS' | ||
| 360 | +-0.011796 O b'lemma:minimal' | ||
| 361 | +-0.012879 Air b'postag:CC' | ||
| 362 | +-0.015192 Supp b'+1:lemma:glucose' | ||
| 363 | +-0.015373 O b'lemma:mg1655' | ||
| 364 | +-0.015533 Med b'postag:JJ' | ||
| 365 | +-0.015705 OD b'+1:postag:CD' | ||
| 366 | +-0.016291 O b'+1:lemma:0.4' | ||
| 367 | +-0.019297 O b'+1:lemma:-lcb-' | ||
| 368 | +-0.019455 OD b'+1:lemma:-lrb-' | ||
| 369 | +-0.022330 O b'+1:lemma:antibody' | ||
| 370 | +-0.024436 O b'+1:lemma:grow' | ||
| 371 | +-0.025452 O b'+1:lemma:~' | ||
| 372 | +-0.025572 OD b'+1:lemma:0.4' | ||
| 373 | +-0.026441 Gtype b'+1:postag:NNS' | ||
| 374 | +-0.030832 O b'-1:lemma:the' | ||
| 375 | +-0.033857 O b'lemma:aerobically' | ||
| 376 | +-0.036355 O b'+1:lemma:mm' | ||
| 377 | +-0.037359 Gtype b'+1:lemma:2' | ||
| 378 | +-0.037661 O b'-1:postag:IN' | ||
| 379 | +-0.040653 O b'lemma:medium' | ||
| 380 | +-0.041962 O b'lemma:glucose' | ||
| 381 | +-0.042266 O b'+1:lemma:Aerobic' | ||
| 382 | +-0.043089 Phase b'+1:postag:NN' | ||
| 383 | +-0.044930 O b'+1:lemma:95' | ||
| 384 | +-0.055017 Gtype b'-1:postag:CD' | ||
| 385 | +-0.055240 O b'lemma:o2' | ||
| 386 | +-0.060245 Gtype b'+1:lemma:cra' | ||
| 387 | +-0.060637 O b'lemma:nacl' | ||
| 388 | +-0.061555 Phase b'-1:postag:NN' | ||
| 389 | +-0.071216 O b'-1:postag:VBN' | ||
| 390 | +-0.073581 O b'-1:lemma:mm' | ||
| 391 | +-0.078544 Med b'postag:CD' | ||
| 392 | +-0.090713 Supp b'-1:postag:NNP' | ||
| 393 | +-0.098591 O b'lemma:\xc2\xb0c' | ||
| 394 | +-0.102077 Air b'-1:postag:CC' | ||
| 395 | +-0.102114 O b'lemma:m63' | ||
| 396 | +-0.105468 Temp b'-1:lemma:\xc2\xb0c' | ||
| 397 | +-0.105895 Supp b'lemma:and' | ||
| 398 | +-0.111348 Air b'-1:lemma:or' | ||
| 399 | +-0.115338 O b'+1:lemma:_' | ||
| 400 | +-0.128807 Med b'-1:postag:NN' | ||
| 401 | +-0.128969 Gtype b'lemma:delta' | ||
| 402 | +-0.131150 O b'+1:lemma:or' | ||
| 403 | +-0.132570 O b'+1:lemma:minimal' | ||
| 404 | +-0.135127 O b'-1:lemma:30' | ||
| 405 | +-0.135964 O b'-1:lemma:e.' | ||
| 406 | +-0.140354 Med b'+1:postag:NN' | ||
| 407 | +-0.145665 O b'-1:lemma:-lrb-' | ||
| 408 | +-0.155987 O b'lemma:n2' | ||
| 409 | +-0.156942 O b'-1:lemma:of' | ||
| 410 | +-0.159639 Gversion b'+1:postag:NN' | ||
| 411 | +-0.161027 O b'-1:lemma:\xe2\x88\x86' | ||
| 412 | +-0.166686 O b'lemma:e.' | ||
| 413 | +-0.169994 OD b'postag:JJ' | ||
| 414 | +-0.176847 Med b'+1:postag:NNS' | ||
| 415 | +-0.176866 Supp b'-1:postag:VBG' | ||
| 416 | +-0.183758 O b'lemma:grow' | ||
| 417 | +-0.188546 O b'-1:lemma:n2' | ||
| 418 | +-0.188833 O b'-1:lemma:g/l' | ||
| 419 | +-0.190322 OD b'+1:lemma:and' | ||
| 420 | +-0.195342 OD b'+1:postag:CC' | ||
| 421 | +-0.202144 O b'-1:postag:-LRB-' | ||
| 422 | +-0.205644 O b'lemma:co2' | ||
| 423 | +-0.210227 Supp b'+1:postag:IN' | ||
| 424 | +-0.213468 O b'-1:lemma:0.1' | ||
| 425 | +-0.214864 O b'lemma:phase' | ||
| 426 | +-0.215815 Supp b'+1:postag:VBN' | ||
| 427 | +-0.219355 Gtype b'postag:CD' | ||
| 428 | +-0.239606 Gtype b'-1:postag:SYM' | ||
| 429 | +-0.243275 O b'-1:lemma:from' | ||
| 430 | +-0.244995 Supp b'postag:CC' | ||
| 431 | +-0.246314 Temp b'postag:JJ' | ||
| 432 | +-0.247956 O b'+1:lemma:.' | ||
| 433 | +-0.247956 O b'+1:postag:.' | ||
| 434 | +-0.249604 O b'+1:lemma:5' | ||
| 435 | +-0.250831 Gtype b'-1:postag:DT' | ||
| 436 | +-0.253469 O b'+1:lemma:-rrb-' | ||
| 437 | +-0.254981 O b'+1:lemma:until' | ||
| 438 | +-0.256496 O b'+1:lemma:shake' | ||
| 439 | +-0.257679 O b'+1:lemma:%' | ||
| 440 | +-0.258132 O b'lemma:lb' | ||
| 441 | +-0.269974 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 442 | +-0.281159 O b'-1:lemma:iptg' | ||
| 443 | +-0.288450 Technique b'-1:lemma::' | ||
| 444 | +-0.293073 O b'+1:postag:IN' | ||
| 445 | +-0.295868 Phase b'-1:lemma:at' | ||
| 446 | +-0.299182 O b'-1:lemma:um' | ||
| 447 | +-0.299182 O b'+1:lemma:paraquat' | ||
| 448 | +-0.314439 O b'lemma:k-12' | ||
| 449 | +-0.325000 O b'+1:lemma:rep1' | ||
| 450 | +-0.330417 Med b'-1:postag:IN' | ||
| 451 | +-0.341066 O b'+1:lemma:c' | ||
| 452 | +-0.359756 O b'lemma:purify' | ||
| 453 | +-0.360517 pH b'postag:NN' | ||
| 454 | +-0.360830 O b'-1:lemma:1' | ||
| 455 | +-0.366396 O b'lemma:30' | ||
| 456 | +-0.368824 Med b'+1:postag:IN' | ||
| 457 | +-0.371177 O b'-1:lemma:rifampicin' | ||
| 458 | +-0.372454 O b'-1:lemma:o2' | ||
| 459 | +-0.379912 Supp b'+1:lemma:rifampicin' | ||
| 460 | +-0.385450 O b'-1:lemma:until' | ||
| 461 | +-0.400292 Anti b'+1:lemma:anti-fur' | ||
| 462 | +-0.408694 Phase b'-1:postag:JJ' | ||
| 463 | +-0.409475 O b'+1:postag:-RRB-' | ||
| 464 | +-0.425033 Anti b'+1:postag:JJ' | ||
| 465 | +-0.431972 O b'-1:lemma:mid-log' | ||
| 466 | +-0.454284 O b'+1:lemma:\xc2\xb0c' | ||
| 467 | +-0.456154 O b'-1:lemma:cra' | ||
| 468 | +-0.468923 O b'+1:lemma:300' | ||
| 469 | +-0.476521 OD b'+1:postag:NN' | ||
| 470 | +-0.486601 O b'+1:lemma:arginine' | ||
| 471 | +-0.497598 O b'-1:lemma:od600' | ||
| 472 | +-0.500312 Temp b'postag:NN' | ||
| 473 | +-0.501307 O b'lemma:\xe2\x88\x86' | ||
| 474 | +-0.527078 O b'-1:lemma:grow' | ||
| 475 | +-0.535232 O b'lemma:media' | ||
| 476 | +-0.560336 Temp b'+1:lemma:to' | ||
| 477 | +-0.560336 Temp b'+1:postag:TO' | ||
| 478 | +-0.580574 Technique b'-1:postag::' | ||
| 479 | +-0.586372 O b'lemma:150' | ||
| 480 | +-0.586372 O b'+1:lemma:mg/ml' | ||
| 481 | +-0.599232 O b'-1:lemma:ml' | ||
| 482 | +-0.631824 O b'lemma:od600' | ||
| 483 | +-0.642215 O b'+1:lemma:cell' | ||
| 484 | +-0.656656 O b'-1:lemma:0.2' | ||
| 485 | +-0.667528 O b'lemma:dissolve' | ||
| 486 | +-0.696155 O b'+1:lemma:0.3' | ||
| 487 | +-0.704278 O b'+1:postag:NNS' | ||
| 488 | +-0.722852 O b'lemma:of' | ||
| 489 | +-0.794409 OD b'lemma:-lrb-' | ||
| 490 | +-0.798043 O b'lemma:mid-log' | ||
| 491 | +-0.800225 Air b'-1:postag:JJ' | ||
| 492 | +-0.807147 O b'+1:lemma:fecl2' | ||
| 493 | +-0.846837 O b'lemma:anaerobically' | ||
| 494 | +-0.848073 O b'-1:postag:VBG' | ||
| 495 | +-0.863647 O b'lemma:\xce\xb4fur' | ||
| 496 | +-0.869227 O b'lemma:anaerobic' | ||
| 497 | +-0.880191 O b'lemma:20' | ||
| 498 | +-0.903243 Supp b'-1:lemma:%' | ||
| 499 | +-0.911617 OD b'postag:-LRB-' | ||
| 500 | +-0.920995 O b'lemma:0.3' | ||
| 501 | +-0.922420 Supp b'+1:lemma:acetate' | ||
| 502 | +-0.960047 O b'-1:lemma:~' | ||
| 503 | +-0.971637 O b'-1:lemma:sample' | ||
| 504 | +-0.997239 O b'-1:lemma:dissolve' | ||
| 505 | +-0.997239 O b'+1:lemma:methanol' | ||
| 506 | +-1.021077 O b'-1:lemma:co2' | ||
| 507 | +-1.029818 O b'-1:postag::' | ||
| 508 | +-1.037126 O b'+1:lemma:g/l' | ||
| 509 | +-1.055847 O b'+1:postag:VBG' | ||
| 510 | +-1.065175 O b'postag:VBP' | ||
| 511 | +-1.100145 O b'lemma:fecl2' | ||
| 512 | +-1.138423 O b'lemma:2h' | ||
| 513 | +-1.138423 O b'-1:lemma:additional' | ||
| 514 | +-1.148498 Air b'postag:NN' | ||
| 515 | +-1.149326 O b'lemma:0.1' | ||
| 516 | +-1.209987 O b'lemma:0.2' | ||
| 517 | +-1.234531 O b'+1:lemma:supplement' | ||
| 518 | +-1.275261 O b'lemma:37' | ||
| 519 | +-1.368318 O b'+1:lemma:at' | ||
| 520 | +-1.399811 O b'-1:lemma:37' | ||
| 521 | +-1.426313 O b'+1:lemma:in' | ||
| 522 | +-1.457935 O b'-1:lemma:rpob' | ||
| 523 | +-1.491896 O b'-1:lemma:ompr' | ||
| 524 | +-1.501624 Air b'+1:postag:JJ' | ||
| 525 | +-1.548871 O b'lemma:wt' | ||
| 526 | +-1.574564 Phase b'postag:JJ' | ||
| 527 | +-1.596170 O b'+1:lemma:hour' | ||
| 528 | +-1.660391 O b'-1:lemma:IP' | ||
| 529 | +-1.699119 Supp b'postag:JJ' | ||
| 530 | +-1.736144 O b'lemma:methanol' | ||
| 531 | +-1.794070 O b'-1:lemma:nsrr' | ||
| 532 | +-1.798927 O b'+1:lemma:+' | ||
| 533 | +-1.799190 Anti b'postag:NNP' | ||
| 534 | +-2.092441 O b'-1:lemma:2' | ||
| 535 | +-2.113784 O b'+1:lemma:2' | ||
| 536 | +-2.209993 O b'lemma:rifampicin' | ||
| 537 | +-2.612840 O b'+1:lemma:1' | ||
| 538 | +-3.674746 O b'-1:lemma:_' | ||
| 539 | +-3.979126 O b'-1:lemma::' | ||
| 540 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.04724343003249949, 'c2': 0.01243677446159028} | 4 | +best params:{'c1': 0.06175888892030738, 'c2': 0.007297468450426697} |
| 5 | -best CV score:0.7976445146405444 | 5 | +best CV score:0.8063684219603322 |
| 6 | model size: 0.08M | 6 | model size: 0.08M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.7934791324630633 | 8 | +Flat F1: 0.8038632313016971 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | - OD 1.000 0.405 0.577 37 | 11 | + OD 0.789 0.405 0.536 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.891 0.860 0.875 57 | 14 | + Med 0.897 0.912 0.904 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | Phase 1.000 0.947 0.973 19 | 18 | Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.742 0.742 0.742 62 | 19 | + Air 0.807 0.742 0.773 62 |
| 20 | Anti 1.000 0.444 0.615 9 | 20 | Anti 1.000 0.444 0.615 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.862 0.764 0.810 106 | 22 | + Gtype 0.867 0.802 0.833 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.869 0.684 0.765 136 | 24 | + Supp 0.877 0.684 0.769 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.875 0.744 0.793 480 | 27 | +avg / total 0.871 0.758 0.804 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -Agit -> Agit 6.389375 | 31 | +Agit -> Agit 7.039997 |
| 32 | -Anti -> Anti 5.797544 | 32 | +OD -> OD 6.131524 |
| 33 | -OD -> OD 5.755859 | 33 | +Anti -> Anti 6.088253 |
| 34 | -Temp -> Temp 5.474910 | 34 | +Temp -> Temp 5.782167 |
| 35 | -Med -> Med 5.305285 | 35 | +Med -> Med 5.473727 |
| 36 | -Gversion -> Gversion 4.804763 | 36 | +Phase -> Phase 5.118964 |
| 37 | -O -> O 4.666202 | 37 | +Gversion -> Gversion 5.069590 |
| 38 | -Air -> Air 4.625279 | 38 | +Air -> Air 5.035955 |
| 39 | -Gtype -> Gtype 4.391065 | 39 | +O -> O 4.832708 |
| 40 | -Phase -> Phase 4.207878 | 40 | +Gtype -> Gtype 4.669937 |
| 41 | -Supp -> Supp 3.772231 | 41 | +Supp -> Supp 4.378479 |
| 42 | -Technique -> Technique 3.487681 | 42 | +Technique -> Technique 3.990893 |
| 43 | -pH -> pH 2.578623 | 43 | +pH -> pH 2.569701 |
| 44 | -O -> Supp 1.341155 | 44 | +Substrain -> Gtype 1.830007 |
| 45 | -Gtype -> Supp 1.313090 | 45 | +O -> Supp 1.626801 |
| 46 | -Substrain -> Gtype 1.142286 | 46 | +O -> Gtype 1.297672 |
| 47 | -O -> Technique 1.070411 | 47 | +Gtype -> Supp 1.190661 |
| 48 | -O -> Gtype 1.049693 | 48 | +O -> Technique 1.135884 |
| 49 | -O -> Anti 0.871683 | 49 | +Air -> O 0.818807 |
| 50 | -Technique -> Air 0.727345 | 50 | +Technique -> Air 0.814259 |
| 51 | -Gtype -> pH 0.559755 | 51 | +O -> Anti 0.771130 |
| 52 | -O -> Temp 0.443406 | 52 | +O -> Temp 0.647711 |
| 53 | -Air -> O 0.413184 | 53 | +O -> Gversion 0.213529 |
| 54 | -Gtype -> Air 0.316166 | 54 | +Med -> O 0.130864 |
| 55 | -O -> Gversion 0.270633 | 55 | +Gtype -> pH 0.110856 |
| 56 | -O -> Strain 0.150083 | 56 | +Temp -> O 0.071206 |
| 57 | -Med -> O 0.029148 | 57 | +O -> Med 0.068395 |
| 58 | -O -> pH 0.001669 | 58 | +OD -> Phase 0.032935 |
| 59 | -OD -> Temp -0.004690 | 59 | +O -> Phase 0.005045 |
| 60 | -pH -> O -0.027664 | 60 | +O -> Strain 0.004127 |
| 61 | -Anti -> O -0.053386 | 61 | +Gtype -> Air 0.001026 |
| 62 | -Air -> Gtype -0.064282 | 62 | +O -> pH 0.000010 |
| 63 | -Gversion -> O -0.068988 | 63 | +Med -> Air -0.000266 |
| 64 | -OD -> Technique -0.076420 | 64 | +Air -> Phase -0.002144 |
| 65 | -Phase -> Air -0.090168 | 65 | +Supp -> Gtype -0.028407 |
| 66 | -O -> Med -0.097953 | 66 | +Gtype -> Phase -0.055051 |
| 67 | -Phase -> O -0.101900 | 67 | +pH -> O -0.067213 |
| 68 | -O -> Phase -0.121729 | 68 | +Phase -> O -0.083281 |
| 69 | -Anti -> Gtype -0.149802 | 69 | +Supp -> Temp -0.086247 |
| 70 | -Air -> Phase -0.152600 | 70 | +O -> Agit -0.105739 |
| 71 | -Anti -> Supp -0.166950 | 71 | +Anti -> OD -0.120656 |
| 72 | -O -> OD -0.195576 | 72 | +Supp -> Gversion -0.132405 |
| 73 | -Gversion -> Air -0.198819 | 73 | +Phase -> Air -0.135463 |
| 74 | -Med -> Air -0.247104 | 74 | +Air -> Temp -0.140622 |
| 75 | -Technique -> Supp -0.254151 | 75 | +OD -> Gtype -0.176085 |
| 76 | -Supp -> pH -0.311839 | 76 | +Gtype -> Gversion -0.192477 |
| 77 | -Supp -> Anti -0.312452 | 77 | +O -> OD -0.271290 |
| 78 | -Anti -> OD -0.340468 | 78 | +Technique -> O -0.302420 |
| 79 | -Supp -> Phase -0.344456 | 79 | +Supp -> OD -0.335241 |
| 80 | -Gtype -> Technique -0.348541 | 80 | +Temp -> Med -0.384357 |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | Top unlikely transitions: | 83 | Top unlikely transitions: |
| 84 | -Phase -> Air -0.090168 | 84 | +O -> Gversion 0.213529 |
| 85 | -O -> Med -0.097953 | 85 | +Med -> O 0.130864 |
| 86 | -Phase -> O -0.101900 | 86 | +Gtype -> pH 0.110856 |
| 87 | -O -> Phase -0.121729 | 87 | +Temp -> O 0.071206 |
| 88 | -Anti -> Gtype -0.149802 | 88 | +O -> Med 0.068395 |
| 89 | -Air -> Phase -0.152600 | 89 | +OD -> Phase 0.032935 |
| 90 | -Anti -> Supp -0.166950 | 90 | +O -> Phase 0.005045 |
| 91 | -O -> OD -0.195576 | 91 | +O -> Strain 0.004127 |
| 92 | -Gversion -> Air -0.198819 | 92 | +Gtype -> Air 0.001026 |
| 93 | -Med -> Air -0.247104 | 93 | +O -> pH 0.000010 |
| 94 | -Technique -> Supp -0.254151 | 94 | +Med -> Air -0.000266 |
| 95 | -Supp -> pH -0.311839 | 95 | +Air -> Phase -0.002144 |
| 96 | -Supp -> Anti -0.312452 | 96 | +Supp -> Gtype -0.028407 |
| 97 | -Anti -> OD -0.340468 | 97 | +Gtype -> Phase -0.055051 |
| 98 | -Supp -> Phase -0.344456 | 98 | +pH -> O -0.067213 |
| 99 | -Gtype -> Technique -0.348541 | 99 | +Phase -> O -0.083281 |
| 100 | -Phase -> Technique -0.371932 | 100 | +Supp -> Temp -0.086247 |
| 101 | -Gtype -> Gversion -0.440310 | 101 | +O -> Agit -0.105739 |
| 102 | -Air -> Temp -0.442388 | 102 | +Anti -> OD -0.120656 |
| 103 | -Gtype -> Phase -0.446343 | 103 | +Supp -> Gversion -0.132405 |
| 104 | -Supp -> Temp -0.482112 | 104 | +Phase -> Air -0.135463 |
| 105 | -OD -> Supp -0.494819 | 105 | +Air -> Temp -0.140622 |
| 106 | -Supp -> O -0.518055 | 106 | +OD -> Gtype -0.176085 |
| 107 | -Technique -> O -0.541070 | 107 | +Gtype -> Gversion -0.192477 |
| 108 | -Gtype -> O -0.554034 | 108 | +O -> OD -0.271290 |
| 109 | -Supp -> Technique -0.694840 | 109 | +Technique -> O -0.302420 |
| 110 | -Supp -> OD -0.711794 | 110 | +Supp -> OD -0.335241 |
| 111 | -Supp -> Gversion -0.733427 | 111 | +Temp -> Med -0.384357 |
| 112 | -OD -> Air -0.787405 | 112 | +Supp -> Technique -0.385060 |
| 113 | -OD -> Gtype -0.827938 | 113 | +Supp -> O -0.403868 |
| 114 | -Supp -> Gtype -0.848914 | 114 | +Gtype -> Med -0.554149 |
| 115 | -Gtype -> Anti -0.850239 | 115 | +Air -> Med -0.637433 |
| 116 | -Temp -> Med -0.927802 | 116 | +OD -> Med -0.669447 |
| 117 | -Gtype -> Med -0.940529 | 117 | +Gtype -> O -0.714185 |
| 118 | -OD -> Med -0.954731 | 118 | +Technique -> OD -0.717082 |
| 119 | -Air -> Med -1.010714 | 119 | +Technique -> Gtype -0.718169 |
| 120 | -OD -> O -1.020865 | 120 | +Technique -> pH -0.760896 |
| 121 | -O -> Air -1.023312 | 121 | +Air -> OD -0.787076 |
| 122 | -Supp -> Air -1.036972 | 122 | +Gtype -> Anti -0.790622 |
| 123 | -Air -> Supp -1.040140 | 123 | +OD -> Air -0.869139 |
| 124 | -Technique -> pH -1.071992 | 124 | +Agit -> O -0.936533 |
| 125 | -Agit -> O -1.092416 | 125 | +Supp -> Air -0.944719 |
| 126 | -Technique -> OD -1.136546 | 126 | +Air -> Supp -0.951816 |
| 127 | -Technique -> Gtype -1.152303 | 127 | +OD -> O -0.966392 |
| 128 | -Air -> OD -1.203336 | 128 | +Gtype -> OD -1.245349 |
| 129 | -Gtype -> OD -1.470509 | 129 | +Supp -> Med -1.310718 |
| 130 | -Substrain -> O -1.705609 | 130 | +Substrain -> O -1.335115 |
| 131 | -Supp -> Med -1.924115 | 131 | +O -> Air -1.686756 |
| 132 | -Med -> Supp -2.263703 | 132 | +Phase -> OD -2.096304 |
| 133 | -Phase -> OD -2.559981 | 133 | +Med -> Supp -2.167551 |
| 134 | 134 | ||
| 135 | 135 | ||
| 136 | Top positive: | 136 | Top positive: |
| 137 | -8.778667 O b'lemma:_' | 137 | +9.429627 O b'lemma:_' |
| 138 | -7.894046 Phase b'lemma:stationary' | 138 | +8.878639 Phase b'lemma:stationary' |
| 139 | -7.688886 Supp b'lemma:Iron' | 139 | +8.718938 Supp b'lemma:Iron' |
| 140 | -7.227846 O b'lemma:1' | 140 | +7.681723 O b'lemma:1' |
| 141 | -6.518255 Air b'lemma:anaerobic' | 141 | +7.568503 Air b'lemma:aerobic' |
| 142 | -6.510310 Air b'lemma:aerobic' | 142 | +7.528752 Technique b'lemma:ChIP-exo' |
| 143 | -6.504238 Phase b'lemma:mid-log' | 143 | +7.490123 Air b'lemma:anaerobic' |
| 144 | -6.494190 Technique b'lemma:ChIP-exo' | 144 | +6.800664 O b'lemma:rpob' |
| 145 | -6.481618 O b'lemma:rpob' | 145 | +6.784655 Supp b'lemma:nitrate' |
| 146 | -6.445611 Strain b'lemma:k-12' | 146 | +6.781496 Med b'lemma:MOPS' |
| 147 | -6.104157 O b'lemma:2' | 147 | +6.698412 Strain b'lemma:k-12' |
| 148 | -6.023116 Technique b'lemma:chipseq' | 148 | +6.360995 Technique b'lemma:chipseq' |
| 149 | -5.944249 Air b'-1:lemma:ChIP-Seq' | 149 | +6.332061 O b'-1:lemma:tag' |
| 150 | -5.823850 Supp b'lemma:pq' | 150 | +6.294441 O b'lemma:2' |
| 151 | -5.723339 O b'lemma:3' | 151 | +6.134867 Supp b'lemma:pq' |
| 152 | -5.687179 O b'-1:lemma:tag' | 152 | +6.056497 Gversion b'lemma:asm584v2' |
| 153 | -5.451451 Gversion b'lemma:asm584v2' | 153 | +5.974776 Gtype b'lemma:\xce\xb4cra' |
| 154 | -5.250448 Substrain b'lemma:mg1655' | 154 | +5.968446 O b'lemma:3' |
| 155 | -5.231044 O b'lemma:rep1' | 155 | +5.959950 Air b'-1:lemma:ChIP-Seq' |
| 156 | -5.209409 Gtype b'lemma:\xce\xb4cra' | 156 | +5.787437 Gtype b'lemma:flag-tag' |
| 157 | -5.200206 Supp b'lemma:nitrate' | 157 | +5.787437 Gtype b'-1:lemma:c-terminal' |
| 158 | -5.178620 O b'lemma:rep2' | 158 | +5.767411 O b'lemma:Custom' |
| 159 | -5.178433 O b'lemma:Cra' | 159 | +5.622312 Air b'lemma:Aerobic' |
| 160 | -5.173563 Med b'lemma:MOPS' | 160 | +5.534195 O b'lemma:rep1' |
| 161 | -5.068820 Gtype b'lemma:flag-tag' | 161 | +5.503124 Gtype b'lemma:arca8myc' |
| 162 | -5.068820 Gtype b'-1:lemma:c-terminal' | 162 | +5.451254 O b'-1:lemma:ChIP-exo' |
| 163 | -5.040185 Supp b'+1:lemma:\xc2\xb5m' | 163 | +5.433030 Substrain b'lemma:mg1655' |
| 164 | -5.017969 O b'lemma:rep3' | 164 | +5.426412 O b'lemma:rep2' |
| 165 | -4.971785 Air b'lemma:Aerobic' | 165 | +5.419246 O b'lemma:b' |
| 166 | -4.954714 Supp b'lemma:glucose' | 166 | +5.392492 O b'lemma:Cra' |
| 167 | -4.889061 Gtype b'lemma:arca8myc' | 167 | +5.313073 Supp b'+1:lemma:\xc2\xb5m' |
| 168 | -4.884882 O b'postag:IN' | 168 | +5.205081 Med b'lemma:LB' |
| 169 | -4.832496 Supp b'lemma:nh4cl' | 169 | +5.079806 Technique b'lemma:ChIP-Seq' |
| 170 | -4.697100 O b'-1:lemma:ChIP-exo' | 170 | +5.049305 Supp b'lemma:glucose' |
| 171 | -4.685588 Gtype b'lemma:delta-arca' | 171 | +5.044483 OD b'lemma:od450' |
| 172 | -4.678766 Med b'lemma:LB' | 172 | +5.039131 O b'lemma:rep3' |
| 173 | -4.646146 O b'lemma:b' | 173 | +5.012495 Gtype b'lemma:delta-arca' |
| 174 | -4.589396 Gtype b'lemma:wt' | 174 | +4.965809 Supp b'lemma:nh4cl' |
| 175 | -4.555367 O b'lemma:\xcf\x8332' | 175 | +4.923813 Gtype b'lemma:type' |
| 176 | -4.535944 Gtype b'-1:lemma:\xe2\x88\x86' | 176 | +4.896333 O b'lemma:a' |
| 177 | -4.520189 Gtype b'lemma:fnr8myc' | 177 | +4.860082 Supp b'lemma:Fe' |
| 178 | -4.461759 Med b'lemma:lb' | 178 | +4.840158 O b'+1:postag:RB' |
| 179 | -4.436556 Technique b'lemma:rna-seq' | 179 | +4.836640 Gtype b'-1:lemma:\xe2\x88\x86' |
| 180 | -4.355492 O b'postag::' | 180 | +4.816606 Phase b'lemma:mid-log' |
| 181 | -4.344693 O b'lemma:a' | 181 | +4.811283 Gtype b'lemma:fnr8myc' |
| 182 | -4.294247 O b'-1:lemma:Aerobic' | 182 | +4.790845 OD b'+1:lemma:stationary' |
| 183 | -4.275618 Supp b'lemma:Fe' | 183 | +4.780811 O b'lemma:\xcf\x8332' |
| 184 | -4.228638 Anti b'lemma:none' | 184 | +4.762091 Gtype b'lemma:wt' |
| 185 | -4.228158 O b'-1:lemma:0.3-0.35' | 185 | +4.756489 O b'+1:lemma:od600' |
| 186 | -4.206556 Supp b'lemma:acetate' | 186 | +4.716971 Technique b'lemma:rna-seq' |
| 187 | -4.187817 Supp b'lemma:no3' | 187 | +4.704242 O b'postag:IN' |
| 188 | -4.123083 Technique b'lemma:chip-seq' | 188 | +4.655483 OD b'lemma:od600' |
| 189 | -4.115374 Technique b'lemma:rnaseq' | 189 | +4.653380 Gversion b'lemma:nc' |
| 190 | -4.092073 O b'lemma:Custom' | 190 | +4.577875 Anti b'lemma:none' |
| 191 | -4.090797 Gtype b'lemma:delta-fnr' | 191 | +4.558396 Supp b'lemma:acetate' |
| 192 | -4.086877 Anti b'lemma:seqa' | 192 | +4.516720 Supp b'lemma:rifampicin' |
| 193 | -4.043157 Supp b'-1:lemma:Cra' | 193 | +4.507138 O b'postag::' |
| 194 | -4.011760 O b'lemma:CEL' | 194 | +4.433020 Gtype b'+1:lemma:type' |
| 195 | -4.000976 Supp b'lemma:rifampicin' | 195 | +4.356436 Gversion b'-1:lemma:nc' |
| 196 | -3.995000 OD b'lemma:od450' | 196 | +4.338051 Supp b'-1:lemma:Cra' |
| 197 | -3.983638 Gversion b'lemma:nc' | 197 | +4.313945 Technique b'lemma:rnaseq' |
| 198 | -3.942031 O b'+1:postag:RB' | 198 | +4.282860 Med b'lemma:lb' |
| 199 | -3.937436 O b'lemma:.' | 199 | +4.266947 Anti b'lemma:seqa' |
| 200 | -3.937436 O b'postag:.' | 200 | +4.245888 Supp b'lemma:no3' |
| 201 | -3.911694 O b'+1:lemma:od600' | 201 | +4.245555 O b'-1:lemma:0.3-0.35' |
| 202 | -3.747230 Gversion b'lemma:chip-seq' | 202 | +4.242062 O b'lemma:.' |
| 203 | -3.735836 Gtype b'lemma:type' | 203 | +4.242062 O b'postag:.' |
| 204 | -3.708583 O b'-1:lemma:anaerobic' | 204 | +4.224468 Gtype b'lemma:delta-fnr' |
| 205 | -3.691098 Gtype b'+1:lemma:type' | 205 | +4.214205 Gtype b'lemma:\xce\xb4fur' |
| 206 | -3.680809 Supp b'lemma:dpd' | 206 | +4.192928 O b'-1:lemma:Aerobic' |
| 207 | -3.646664 Med b'+1:lemma:0.4' | 207 | +4.142672 Technique b'lemma:chip-seq' |
| 208 | -3.593949 O b'-1:lemma:glucose' | 208 | +4.113542 Supp b'lemma:dpd' |
| 209 | -3.588513 Gtype b'lemma:\xe2\x88\x86' | 209 | +4.085146 O b'lemma:-' |
| 210 | -3.552980 Technique b'lemma:ChIP-Seq' | 210 | +3.963197 Med b'+1:lemma:0.4' |
| 211 | -3.547388 OD b'lemma:od600' | 211 | +3.958952 O b'+1:lemma:o.d.' |
| 212 | -3.533518 Gtype b'+1:lemma:with' | 212 | +3.887023 Supp b'lemma:fructose' |
| 213 | -3.504439 O b'+1:lemma:o.d.' | 213 | +3.878469 Supp b'+1:lemma:hour' |
| 214 | -3.492405 O b'lemma:-' | 214 | +3.849287 Strain b'+1:lemma:substr' |
| 215 | -3.484369 Gtype b'lemma:\xce\xb4fur' | 215 | +3.805978 O b'lemma:with' |
| 216 | -3.480535 Supp b'+1:lemma:1' | 216 | +3.794001 Vess b'lemma:flask' |
| 217 | -3.463027 Supp b'lemma:arginine' | 217 | +3.794001 Vess b'-1:lemma:warm' |
| 218 | -3.457950 O b'-1:lemma:lb' | 218 | +3.787347 Gtype b'lemma:nsrr' |
| 219 | -3.432558 Gtype b'lemma:nsrr' | 219 | +3.742649 O b'-1:lemma:glucose' |
| 220 | -3.411785 Vess b'lemma:flask' | 220 | +3.720278 O b'+1:lemma:chip-seq' |
| 221 | -3.411785 Vess b'-1:lemma:warm' | 221 | +3.702007 Gtype b'-1:lemma:ptac' |
| 222 | -3.392532 O b'lemma:with' | 222 | +3.662982 Supp b'+1:lemma:1' |
| 223 | -3.384479 pH b'lemma:ph5' | 223 | +3.654612 Anti b'lemma:anti-myc' |
| 224 | -3.384479 pH b'+1:lemma:.5' | 224 | +3.649389 Supp b'+1:lemma:Deficient' |
| 225 | -3.360996 Air b'postag:RB' | 225 | +3.646552 Supp b'lemma:arginine' |
| 226 | -3.348572 O b'lemma:for' | 226 | +3.618594 O b'lemma:CEL' |
| 227 | -3.346364 Gtype b'lemma:wild-type' | 227 | +3.606640 O b'-1:lemma:0.3' |
| 228 | -3.342085 Strain b'+1:lemma:substr' | 228 | +3.599357 O b'postag:VBN' |
| 229 | -3.336804 O b'lemma:oxyr' | 229 | +3.586637 Temp b'lemma:\xc2\xb0c' |
| 230 | -3.311067 Supp b'lemma:fructose' | 230 | +3.576770 Air b'lemma:Anaerobic' |
| 231 | -3.305851 Anti b'lemma:anti-myc' | 231 | +3.574484 O b'-1:lemma:anaerobic' |
| 232 | -3.281892 Supp b'+1:lemma:Deficient' | 232 | +3.573047 O b'lemma:ompr' |
| 233 | -3.280890 Med b'lemma:m63' | 233 | +3.556429 Gtype b'lemma:wild-type' |
| 234 | -3.275989 Gtype b'lemma:\xce\xb4soxs' | 234 | +3.554917 Gtype b'-1:lemma:rpob' |
| 235 | -3.263146 O b'lemma:or' | 235 | +3.554502 O b'lemma:2-3' |
| 236 | -3.240421 O b'postag:VBN' | 236 | +3.523026 Supp b'-1:lemma:+' |
| 237 | -3.225118 O b'lemma:s' | 237 | +3.503145 O b'lemma:s' |
| 238 | -3.218060 Supp b'+1:lemma:2' | 238 | +3.499526 Gtype b'+1:lemma:with' |
| 239 | -3.170999 O b'lemma:ompr' | 239 | +3.489586 Gtype b'lemma:\xe2\x88\x86' |
| 240 | -3.157791 O b'-1:lemma:type' | 240 | +3.467032 O b'-1:lemma:type' |
| 241 | -3.150274 Gversion b'-1:lemma:nc' | 241 | +3.452564 Gversion b'lemma:chip-seq' |
| 242 | -3.144459 O b'lemma:affyexp' | 242 | +3.446983 O b'lemma:oxyr' |
| 243 | -3.098092 Temp b'-1:lemma:37' | 243 | +3.437767 pH b'lemma:ph5' |
| 244 | -3.074698 Anti b'+1:lemma:antibody' | 244 | +3.437767 pH b'+1:lemma:.5' |
| 245 | -3.074328 OD b'+1:lemma:stationary' | 245 | +3.432615 Anti b'lemma:anti-rpos' |
| 246 | -3.057680 Gtype b'lemma:WT' | 246 | +3.418713 O b'lemma:or' |
| 247 | -3.055594 Technique b'-1:lemma:IP' | 247 | +3.407689 Med b'lemma:m63' |
| 248 | -3.047772 Supp b'-1:lemma:+' | 248 | +3.401201 O b'lemma:for' |
| 249 | -3.030792 Supp b'lemma:nacl' | 249 | +3.394419 Med b'+1:lemma:minimal' |
| 250 | -3.021146 Gversion b'lemma:u00096' | 250 | +3.357624 Air b'lemma:anerobically' |
| 251 | -3.021146 Gversion b'+1:lemma:.2' | 251 | +3.345050 Temp b'-1:lemma:37' |
| 252 | -3.016112 Air b'lemma:Anaerobic' | 252 | +3.316153 Gtype b'+1:lemma:ph5' |
| 253 | -3.015642 O b'lemma:chip-arca' | 253 | +3.308024 O b'lemma:chip' |
| 254 | -2.992114 Gtype b'lemma:\xce\xb4ompr' | 254 | +3.305474 Gtype b'+1:lemma:pq' |
| 255 | -2.991588 Substrain b'+1:lemma:phtpg' | 255 | +3.303537 Temp b'-1:lemma:sample' |
| 256 | -2.962136 Gversion b'lemma:.2' | 256 | +3.262181 Gtype b'lemma:\xce\xb4ompr' |
| 257 | -2.962136 Gversion b'-1:lemma:u00096' | 257 | +3.232854 Gversion b'lemma:.2' |
| 258 | -2.943798 Supp b'+1:lemma:_' | 258 | +3.232854 Gversion b'-1:lemma:u00096' |
| 259 | -2.929777 O b'+1:lemma:anti-fur' | 259 | +3.227066 Gversion b'lemma:000913' |
| 260 | -2.906800 Temp b'-1:lemma:43' | 260 | +3.204195 Phase b'-1:lemma:until' |
| 261 | -2.894662 Gversion b'lemma:000913' | 261 | +3.194368 Temp b'-1:lemma:\xcf\x8332' |
| 262 | -2.885668 Gtype b'-1:lemma:ptac' | 262 | +3.192675 O b'lemma:affyexp' |
| 263 | -2.873518 O b'lemma:2-3' | 263 | +3.185554 Air b'lemma:anaerobically' |
| 264 | -2.848786 Air b'lemma:anaerobically' | 264 | +3.157577 Supp b'+1:lemma:2' |
| 265 | -2.846499 Med b'+1:lemma:2.0' | 265 | +3.152351 O b'-1:lemma:dpd' |
| 266 | -2.846396 Supp b'lemma:Leu' | 266 | +3.147823 Anti b'+1:lemma:antibody' |
| 267 | -2.832090 O b'lemma:argr' | 267 | +3.147197 Gversion b'lemma:u00096' |
| 268 | -2.824032 Gtype b'+1:lemma:flagtag' | 268 | +3.147197 Gversion b'+1:lemma:.2' |
| 269 | -2.803595 Air b'lemma:anerobically' | 269 | +3.145534 Med b'+1:lemma:2.0' |
| 270 | -2.790970 Temp b'lemma:43' | 270 | +3.144986 O b'lemma:chip-arca' |
| 271 | -2.789734 O b'lemma:soxs' | 271 | +3.128621 O b'-1:lemma:\xc2\xb0c' |
| 272 | -2.789734 O b'lemma:soxr' | 272 | +3.123647 Gtype b'lemma:\xce\xb4soxs' |
| 273 | -2.761406 Anti b'lemma:anti-rpos' | 273 | +3.096543 O b'+1:lemma:mid-log' |
| 274 | -2.759003 Gtype b'lemma:deltaseqa' | 274 | +3.081866 Technique b'-1:lemma:IP' |
| 275 | -2.759003 Gtype b'-1:lemma:old' | 275 | +3.074036 O b'+1:lemma:pq' |
| 276 | -2.758592 O b'+1:lemma:chip-seq' | 276 | +3.055089 Gtype b'lemma:pk4854' |
| 277 | -2.753991 O b'lemma:purr' | 277 | +3.047512 Gtype b'+1:lemma:flagtag' |
| 278 | -2.739456 O b'lemma:Lrp' | 278 | +3.033127 Technique b'-1:lemma:chip-exo' |
| 279 | -2.739128 Gtype b'lemma:pk4854' | 279 | +3.002892 Supp b'lemma:Leu' |
| 280 | -2.724879 Temp b'-1:lemma:sample' | 280 | +2.999013 Supp b'lemma:Adenine' |
| 281 | -2.710711 O b'-1:lemma:stpa' | 281 | +2.974704 O b'-1:lemma:lb' |
| 282 | -2.707614 O b'-1:lemma:dpd' | 282 | +2.958351 Med b'-1:lemma:ml' |
| 283 | -2.693567 O b'lemma:chip' | 283 | +2.936300 Air b'+1:lemma:at' |
| 284 | -2.680179 Temp b'lemma:\xc2\xb0c' | 284 | +2.921131 Gtype b'lemma:WT' |
| 285 | -2.675708 O b'lemma:at' | 285 | +2.907355 O b'lemma:argr' |
| 286 | -2.674777 Supp b'lemma:Adenine' | 286 | +2.906382 Technique b'+1:lemma:chip-exo' |
| 287 | -2.654457 Med b'-1:lemma:ml' | 287 | +2.887412 OD b'-1:lemma:~' |
| 288 | -2.621739 Supp b'+1:lemma:hour' | 288 | +2.886486 O b'lemma:at' |
| 289 | -2.617235 Technique b'-1:lemma:chip-exo' | 289 | +2.880821 Technique b'-1:lemma:input' |
| 290 | -2.613832 Med b'+1:lemma:minimal' | 290 | +2.874454 Temp b'-1:lemma:43' |
| 291 | -2.609168 O b'lemma:Fur' | 291 | +2.847136 O b'-1:lemma:stpa' |
| 292 | -2.603191 Gtype b'lemma:ptac' | 292 | +2.828648 Gtype b'lemma:ptac' |
| 293 | -2.602754 Temp b'-1:lemma:\xcf\x8332' | 293 | +2.821605 Gtype b'lemma:deltaseqa' |
| 294 | -2.600527 Technique b'-1:lemma:input' | 294 | +2.821605 Gtype b'-1:lemma:old' |
| 295 | -2.586051 Gtype b'-1:lemma:rpob' | 295 | +2.819393 Supp b'+1:lemma:_' |
| 296 | -2.582507 Supp b'lemma:iptg' | 296 | +2.815914 O b'lemma:purr' |
| 297 | -2.575439 pH b'lemma:.5' | 297 | +2.782076 Supp b'lemma:nacl' |
| 298 | -2.575439 pH b'-1:lemma:ph5' | 298 | +2.766819 Air b'postag:RB' |
| 299 | -2.567178 Phase b'+1:lemma:for' | 299 | +2.765932 O b'lemma:soxs' |
| 300 | -2.561161 Temp b'lemma:37' | 300 | +2.765932 O b'lemma:soxr' |
| 301 | -2.554310 Phase b'-1:lemma:mid-log' | 301 | +2.755196 pH b'lemma:.5' |
| 302 | -2.520491 Gtype b'lemma:\xce\xb4oxyr' | 302 | +2.755196 pH b'-1:lemma:ph5' |
| 303 | -2.510164 O b'postag:SYM' | 303 | +2.722030 O b'-1:lemma:l1' |
| 304 | -2.501887 Gtype b'lemma:\xce\xb4soxr' | 304 | +2.718971 Air b'-1:postag::' |
| 305 | -2.469798 O b'-1:lemma:l1' | 305 | +2.658925 O b'lemma:culture' |
| 306 | -2.453386 Phase b'-1:lemma:until' | 306 | +2.648763 Med b'lemma:L' |
| 307 | -2.441656 O b'+1:lemma:43' | 307 | +2.648763 Med b'+1:lemma:broth' |
| 308 | -2.410885 O b'+1:lemma:mid-log' | 308 | +2.627139 Technique b'+1:lemma:rna-seq' |
| 309 | -2.403011 Gtype b'+1:lemma:ph5' | 309 | +2.619872 Med b'lemma:glucose' |
| 310 | -2.401711 Med b'lemma:glucose' | 310 | +2.619781 Supp b'lemma:methanol' |
| 311 | -2.400503 Med b'lemma:L' | 311 | +2.591668 O b'lemma:Lrp' |
| 312 | -2.400503 Med b'+1:lemma:broth' | 312 | +2.561051 O b'lemma:one' |
| 313 | -2.386245 O b'+1:lemma:pq' | 313 | +2.550533 O b'+1:lemma:43' |
| 314 | -2.371627 O b'postag:VBG' | 314 | +2.549438 Supp b'lemma:iptg' |
| 315 | -2.358742 O b'lemma:chip-fnr' | 315 | +2.527814 Med b'-1:lemma:LB' |
| 316 | -2.353099 Gtype b'lemma:dfnr' | 316 | +2.524624 Temp b'lemma:37' |
| 317 | -2.338808 Supp b'+1:lemma:respiratory' | 317 | +2.515848 OD b'-1:lemma:about' |
| 318 | -2.338302 O b'+1:lemma:sparging' | 318 | +2.506523 Temp b'lemma:43' |
| 319 | -2.329852 Gtype b'+1:lemma:aerobic' | 319 | +2.504102 O b'+1:postag:VBP' |
| 320 | -2.319775 O b'postag:DT' | 320 | +2.486048 Gtype b'lemma:dfnr' |
| 321 | -2.307514 Supp b'lemma:0.2' | 321 | +2.463884 O b'postag:DT' |
| 322 | -2.298843 Med b'+1:lemma:+' | 322 | +2.460887 O b'postag:VBG' |
| 323 | -2.298674 Supp b'lemma:methanol' | 323 | +2.404015 Gtype b'lemma:\xce\xb4soxr' |
| 324 | -2.262217 Gversion b'lemma:_' | 324 | +2.395072 O b'lemma:pt7' |
| 325 | -2.247831 Gtype b'+1:lemma:pq' | 325 | +2.386555 Gtype b'lemma:\xce\xb4oxyr' |
| 326 | -2.246181 O b'lemma:genotype/variation' | 326 | +2.384720 O b'+1:postag:NNP' |
| 327 | -2.244933 Air b'-1:lemma:-' | 327 | +2.384009 Phase b'+1:lemma:for' |
| 328 | -2.243583 Gtype b'-1:lemma:nsrr' | 328 | +2.375984 Gtype b'-1:lemma:phtpg' |
| 329 | -2.241509 Technique b'+1:lemma:chip-exo' | 329 | +2.357924 Supp b'lemma:leucine' |
| 330 | -2.238931 Supp b'+1:lemma:and' | 330 | +2.346880 Gtype b'+1:lemma:aerobic' |
| 331 | -2.229747 OD b'lemma:0.3' | 331 | +2.331271 pH b'+1:postag:CD' |
| 332 | -2.227356 O b'lemma:pt7' | 332 | +2.296129 Gtype b'-1:lemma:nsrr' |
| 333 | -2.218343 O b'-1:lemma:min' | 333 | +2.286249 O b'lemma:Fur' |
| 334 | -2.209534 OD b'-1:lemma:~' | 334 | +2.281780 OD b'lemma:0.3' |
| 335 | -2.191059 O b'postag:CC' | 335 | +2.279276 O b'lemma:delta' |
| 336 | -2.183306 O b'-1:lemma:media' | 336 | +2.265327 Med b'postag:NNP' |
| 337 | 337 | ||
| 338 | 338 | ||
| 339 | Top negative: | 339 | Top negative: |
| 340 | --0.007960 O b'+1:lemma:25' | 340 | +-0.000825 O b'+1:lemma:95' |
| 341 | --0.011560 Gtype b'-1:lemma:,' | 341 | +-0.001451 O b'lemma:5' |
| 342 | --0.011560 Gtype b'-1:postag:,' | 342 | +-0.001572 O b'-1:lemma:-lrb-' |
| 343 | --0.012403 Air b'-1:lemma:anaerobically' | 343 | +-0.002926 O b'+1:lemma:25' |
| 344 | --0.013219 O b'lemma:pahse' | 344 | +-0.003089 OD b'-1:postag:DT' |
| 345 | --0.013507 Gversion b'-1:postag:NN' | 345 | +-0.003331 OD b'+1:postag:-LRB-' |
| 346 | --0.013699 O b'+1:lemma:medium' | 346 | +-0.003846 O b'+1:lemma:a' |
| 347 | --0.014516 Med b'-1:postag:CD' | 347 | +-0.004476 O b'+1:lemma:0.4' |
| 348 | --0.014698 Gtype b'-1:lemma:mg1655' | 348 | +-0.004597 Air b'-1:lemma:aerobically' |
| 349 | --0.016645 OD b'+1:lemma:~' | 349 | +-0.005115 Gtype b'+1:lemma:2' |
| 350 | --0.017116 Supp b'+1:lemma:glucose' | 350 | +-0.005380 Temp b'-1:lemma:\xc2\xb0c' |
| 351 | --0.018290 OD b'+1:lemma:0.4' | 351 | +-0.006805 O b'-1:lemma:,' |
| 352 | --0.019265 O b'lemma:25' | 352 | +-0.006805 O b'-1:postag:,' |
| 353 | --0.020700 Med b'+1:postag:NNS' | 353 | +-0.007118 Air b'-1:postag:CC' |
| 354 | --0.020972 O b'+1:lemma:0.4' | 354 | +-0.010580 O b'+1:lemma:dissolve' |
| 355 | --0.022100 OD b'+1:postag:-LRB-' | 355 | +-0.012150 OD b'+1:postag:CD' |
| 356 | --0.022143 O b'+1:lemma:strain' | 356 | +-0.017346 O b'-1:postag:IN' |
| 357 | --0.024088 Supp b'-1:postag:VBG' | 357 | +-0.019089 O b'-1:lemma:1' |
| 358 | --0.038792 O b'+1:postag:CD' | 358 | +-0.021090 O b'+1:lemma:grow' |
| 359 | --0.039859 O b'-1:postag:IN' | 359 | +-0.021180 O b'lemma:30' |
| 360 | --0.040290 O b'+1:lemma:k-12' | 360 | +-0.021446 O b'lemma:cell' |
| 361 | --0.041101 O b'lemma:nacl' | 361 | +-0.021525 OD b'lemma:~' |
| 362 | --0.042472 Gtype b'+1:lemma:cra' | 362 | +-0.021651 Gtype b'-1:lemma:mg1655' |
| 363 | --0.052362 O b'+1:lemma:grow' | 363 | +-0.022113 Air b'-1:lemma:anaerobically' |
| 364 | --0.054063 Anti b'-1:postag:NN' | 364 | +-0.023965 O b'lemma:nacl' |
| 365 | --0.057006 O b'-1:lemma:20' | 365 | +-0.025824 Med b'-1:postag:CD' |
| 366 | --0.057134 O b'-1:lemma:mm' | 366 | +-0.026049 OD b'postag:IN' |
| 367 | --0.062775 Phase b'-1:postag:NN' | 367 | +-0.028482 OD b'+1:postag:DT' |
| 368 | --0.064327 O b'-1:postag:VBN' | 368 | +-0.029411 OD b'+1:lemma:0.4' |
| 369 | --0.064682 O b'postag:RB' | 369 | +-0.031488 O b'lemma:mg1655' |
| 370 | --0.066584 Supp b'-1:postag:NN' | 370 | +-0.032375 OD b'-1:lemma:a' |
| 371 | --0.069958 Gtype b'postag:CD' | 371 | +-0.038129 O b'+1:lemma:co2' |
| 372 | --0.071415 O b'+1:lemma:95' | 372 | +-0.041455 O b'-1:lemma:with' |
| 373 | --0.073208 Phase b'lemma:pahse' | 373 | +-0.046377 O b'+1:lemma:mm' |
| 374 | --0.078903 Gtype b'-1:postag:NN' | 374 | +-0.046769 O b'+1:lemma:o2' |
| 375 | --0.080786 O b'+1:lemma:5' | 375 | +-0.047221 O b'lemma:medium' |
| 376 | --0.083451 Temp b'-1:lemma:\xc2\xb0c' | 376 | +-0.047788 Gtype b'+1:lemma:\xe2\x88\x86' |
| 377 | --0.084429 O b'+1:lemma:antibody' | 377 | +-0.051338 O b'lemma:k-12' |
| 378 | --0.093835 O b'-1:lemma:fresh' | 378 | +-0.058113 O b'+1:lemma:shake' |
| 379 | --0.095847 Supp b'+1:postag:IN' | 379 | +-0.067222 O b'+1:lemma:phase' |
| 380 | --0.103631 OD b'postag:JJ' | 380 | +-0.067235 Strain b'+1:postag:NN' |
| 381 | --0.105270 O b'+1:lemma:o2' | 381 | +-0.068404 Gtype b'-1:postag:SYM' |
| 382 | --0.106875 O b'+1:lemma:mm' | 382 | +-0.070459 Phase b'+1:postag:NN' |
| 383 | --0.117705 O b'+1:lemma:dissolve' | 383 | +-0.071893 O b'lemma:m63' |
| 384 | --0.119607 Med b'+1:postag:NN' | 384 | +-0.074961 O b'-1:lemma:fresh' |
| 385 | --0.123002 OD b'+1:postag:CD' | 385 | +-0.076182 O b'-1:lemma:mm' |
| 386 | --0.127620 O b'-1:lemma:g/l' | 386 | +-0.081344 Technique b'-1:lemma::' |
| 387 | --0.133716 Gtype b'-1:postag:CD' | 387 | +-0.089803 O b'lemma:o2' |
| 388 | --0.140619 O b'-1:lemma:-lrb-' | 388 | +-0.090417 O b'-1:lemma:e.' |
| 389 | --0.143859 O b'lemma:o2' | 389 | +-0.090764 O b'lemma:grow' |
| 390 | --0.144789 O b'-1:lemma:o2' | 390 | +-0.099382 Supp b'-1:postag:NN' |
| 391 | --0.146704 O b'-1:lemma:30' | 391 | +-0.101790 Gtype b'-1:postag:CD' |
| 392 | --0.147636 Temp b'postag:JJ' | 392 | +-0.106440 O b'+1:lemma:300' |
| 393 | --0.152183 Gtype b'+1:lemma:\xe2\x88\x86' | 393 | +-0.107647 Gtype b'-1:postag:NN' |
| 394 | --0.153487 Med b'+1:postag:CC' | 394 | +-0.110265 O b'-1:lemma:\xe2\x88\x86' |
| 395 | --0.156696 O b'lemma:mg1655' | 395 | +-0.113592 O b'lemma:\xc2\xb0c' |
| 396 | --0.156753 O b'lemma:e.' | 396 | +-0.113759 O b'+1:lemma:5' |
| 397 | --0.159541 Technique b'-1:lemma::' | 397 | +-0.126723 O b'-1:lemma:until' |
| 398 | --0.162599 O b'-1:lemma:minimal' | 398 | +-0.127511 Supp b'+1:lemma:glucose' |
| 399 | --0.167611 O b'-1:lemma:with' | 399 | +-0.130049 O b'-1:lemma:minimal' |
| 400 | --0.176978 O b'-1:postag:-LRB-' | 400 | +-0.138770 O b'lemma:e.' |
| 401 | --0.179005 O b'lemma:m63' | 401 | +-0.140462 O b'lemma:aerobically' |
| 402 | --0.180170 O b'lemma:medium' | 402 | +-0.140632 O b'lemma:minimal' |
| 403 | --0.183738 O b'+1:lemma:Aerobic' | 403 | +-0.140732 O b'-1:lemma:of' |
| 404 | --0.190885 O b'lemma:n2' | 404 | +-0.151688 Phase b'-1:lemma:at' |
| 405 | --0.191225 Supp b'-1:postag:NNP' | 405 | +-0.153011 Supp b'+1:postag:IN' |
| 406 | --0.198786 O b'-1:lemma:n2' | 406 | +-0.155728 Air b'-1:lemma:or' |
| 407 | --0.199226 Supp b'-1:lemma:and' | 407 | +-0.155927 O b'lemma:n2' |
| 408 | --0.199384 O b'lemma:\xc2\xb0c' | 408 | +-0.158122 O b'lemma:purify' |
| 409 | --0.202752 O b'-1:lemma:of' | 409 | +-0.159148 O b'-1:postag:-LRB-' |
| 410 | --0.208526 O b'+1:lemma:-rrb-' | 410 | +-0.162204 O b'-1:lemma:n2' |
| 411 | --0.210040 O b'-1:lemma:e.' | 411 | +-0.163370 Gtype b'postag:CD' |
| 412 | --0.219231 O b'+1:lemma:shake' | 412 | +-0.165311 O b'+1:lemma:-rrb-' |
| 413 | --0.219460 Gtype b'-1:postag:DT' | 413 | +-0.181332 O b'+1:lemma:antibody' |
| 414 | --0.237900 O b'-1:lemma:0.1' | 414 | +-0.183547 Med b'postag:CD' |
| 415 | --0.241643 O b'lemma:lb' | 415 | +-0.187622 O b'+1:lemma:minimal' |
| 416 | --0.242224 Supp b'lemma:and' | 416 | +-0.190046 Gversion b'-1:postag:NN' |
| 417 | --0.245820 O b'lemma:co2' | 417 | +-0.193027 O b'-1:lemma:o2' |
| 418 | --0.252281 Temp b'-1:postag:IN' | 418 | +-0.199971 O b'+1:lemma:.' |
| 419 | --0.261850 OD b'+1:postag:NN' | 419 | +-0.199971 O b'+1:postag:.' |
| 420 | --0.266916 Supp b'+1:postag:VBN' | 420 | +-0.203385 Med b'-1:postag:NN' |
| 421 | --0.267689 O b'+1:lemma:until' | 421 | +-0.221160 O b'-1:postag:VBN' |
| 422 | --0.271480 O b'-1:lemma:\xe2\x88\x86' | 422 | +-0.230480 Supp b'lemma:and' |
| 423 | --0.277039 O b'+1:lemma:minimal' | 423 | +-0.232278 Med b'+1:lemma:media' |
| 424 | --0.277788 O b'lemma:grow' | 424 | +-0.234457 Med b'+1:postag:CC' |
| 425 | --0.285871 O b'+1:postag:IN' | 425 | +-0.235346 Gtype b'-1:postag:DT' |
| 426 | --0.296129 Med b'postag:-LRB-' | 426 | +-0.239623 O b'-1:lemma:um' |
| 427 | --0.302011 O b'-1:lemma:um' | 427 | +-0.239623 O b'+1:lemma:paraquat' |
| 428 | --0.302011 O b'+1:lemma:paraquat' | 428 | +-0.242354 O b'lemma:co2' |
| 429 | --0.304578 O b'+1:postag:-RRB-' | 429 | +-0.264358 O b'-1:lemma:mid-log' |
| 430 | --0.307866 Med b'lemma:-lrb-' | 430 | +-0.265962 Supp b'-1:postag:NNP' |
| 431 | --0.309056 O b'+1:lemma:.' | 431 | +-0.267624 Supp b'-1:lemma:-' |
| 432 | --0.309056 O b'+1:postag:.' | 432 | +-0.283009 O b'lemma:phase' |
| 433 | --0.312126 Air b'-1:lemma:or' | 433 | +-0.307486 O b'-1:lemma:from' |
| 434 | --0.317647 O b'lemma:minimal' | 434 | +-0.311456 O b'-1:lemma:rifampicin' |
| 435 | --0.319138 Gtype b'-1:postag:SYM' | 435 | +-0.336644 O b'-1:lemma:od600' |
| 436 | --0.326202 O b'-1:lemma:1' | 436 | +-0.348696 O b'-1:lemma:cra' |
| 437 | --0.328780 Phase b'-1:lemma:at' | 437 | +-0.349206 O b'-1:lemma:30' |
| 438 | --0.346851 O b'+1:lemma:300' | 438 | +-0.349519 O b'+1:lemma:\xc2\xb0c' |
| 439 | --0.351977 Med b'-1:postag:NN' | 439 | +-0.376657 O b'+1:lemma:until' |
| 440 | --0.355707 O b'lemma:30' | 440 | +-0.376734 O b'+1:lemma:or' |
| 441 | --0.365992 Gversion b'+1:postag:NN' | 441 | +-0.380376 O b'lemma:lb' |
| 442 | --0.367337 O b'-1:lemma:grow' | 442 | +-0.391631 Anti b'+1:postag:JJ' |
| 443 | --0.387748 O b'lemma:k-12' | 443 | +-0.391764 O b'postag:RB' |
| 444 | --0.389573 O b'+1:lemma:cell' | 444 | +-0.393925 Med b'-1:postag:IN' |
| 445 | --0.397777 O b'-1:lemma:from' | 445 | +-0.404484 O b'-1:lemma:0.1' |
| 446 | --0.400558 O b'-1:lemma:mid-log' | 446 | +-0.405885 O b'+1:postag:-RRB-' |
| 447 | --0.403379 O b'+1:lemma:phase' | 447 | +-0.410930 OD b'+1:lemma:and' |
| 448 | --0.433545 Supp b'+1:lemma:rifampicin' | 448 | +-0.440153 Agit b'postag:NN' |
| 449 | --0.436853 O b'+1:lemma:or' | 449 | +-0.449451 O b'+1:lemma:rep1' |
| 450 | --0.441744 Med b'postag:CD' | 450 | +-0.458859 O b'lemma:od600' |
| 451 | --0.446245 Med b'+1:postag:IN' | 451 | +-0.466920 O b'-1:lemma:grow' |
| 452 | --0.451884 Gtype b'lemma:delta' | 452 | +-0.485539 O b'lemma:dissolve' |
| 453 | --0.460983 Anti b'+1:postag:JJ' | 453 | +-0.485571 O b'+1:lemma:arginine' |
| 454 | --0.469979 O b'+1:lemma:_' | 454 | +-0.500536 OD b'+1:postag:CC' |
| 455 | --0.472319 O b'-1:lemma:rifampicin' | 455 | +-0.501505 Anti b'+1:lemma:anti-fur' |
| 456 | --0.497593 O b'-1:lemma:cra' | 456 | +-0.508110 O b'+1:lemma:_' |
| 457 | --0.503197 O b'-1:lemma:od600' | 457 | +-0.509492 O b'lemma:media' |
| 458 | --0.504727 Supp b'postag:CC' | 458 | +-0.520104 O b'+1:postag:IN' |
| 459 | --0.508290 pH b'postag:NN' | 459 | +-0.520122 Med b'+1:postag:NN' |
| 460 | --0.516046 O b'+1:lemma:%' | 460 | +-0.536661 O b'lemma:anaerobic' |
| 461 | --0.518365 Technique b'-1:postag::' | 461 | +-0.537297 OD b'+1:postag:NN' |
| 462 | --0.523304 OD b'+1:lemma:and' | 462 | +-0.552346 O b'+1:lemma:%' |
| 463 | --0.525519 OD b'+1:postag:CC' | 463 | +-0.557522 Supp b'postag:CC' |
| 464 | --0.558490 O b'+1:postag:NNS' | 464 | +-0.561985 O b'lemma:\xe2\x88\x86' |
| 465 | --0.586906 O b'-1:lemma:co2' | 465 | +-0.562073 O b'-1:lemma:~' |
| 466 | --0.603821 O b'lemma:150' | 466 | +-0.563392 Temp b'postag:JJ' |
| 467 | --0.603821 O b'+1:lemma:mg/ml' | 467 | +-0.565743 O b'-1:lemma:co2' |
| 468 | --0.605931 O b'+1:lemma:arginine' | 468 | +-0.569796 Technique b'-1:postag::' |
| 469 | --0.606479 O b'lemma:phase' | 469 | +-0.575269 O b'lemma:150' |
| 470 | --0.611575 O b'lemma:od600' | 470 | +-0.575269 O b'+1:lemma:mg/ml' |
| 471 | --0.651162 O b'+1:lemma:rep1' | 471 | +-0.583809 O b'+1:lemma:0.3' |
| 472 | --0.653345 O b'lemma:dissolve' | 472 | +-0.589903 Phase b'-1:postag:NN' |
| 473 | --0.665212 Med b'-1:postag:IN' | 473 | +-0.589906 Supp b'-1:postag:VBG' |
| 474 | --0.669800 OD b'lemma:-lrb-' | 474 | +-0.624638 Med b'+1:postag:IN' |
| 475 | --0.672263 O b'-1:lemma:0.2' | 475 | +-0.647563 OD b'lemma:-lrb-' |
| 476 | --0.687604 O b'lemma:\xe2\x88\x86' | 476 | +-0.651123 O b'lemma:0.3' |
| 477 | --0.707413 Temp b'+1:lemma:to' | 477 | +-0.672987 O b'+1:postag:NNS' |
| 478 | --0.707413 Temp b'+1:postag:TO' | 478 | +-0.675261 O b'lemma:fecl2' |
| 479 | --0.709054 Temp b'postag:NN' | 479 | +-0.712388 Med b'+1:postag:NNS' |
| 480 | --0.717292 O b'lemma:mid-log' | 480 | +-0.714926 O b'+1:lemma:c' |
| 481 | --0.727885 O b'-1:lemma:until' | 481 | +-0.727882 O b'-1:lemma:0.2' |
| 482 | --0.733043 O b'lemma:media' | 482 | +-0.741220 OD b'postag:-LRB-' |
| 483 | --0.733111 O b'+1:lemma:c' | 483 | +-0.746499 Gversion b'+1:postag:NN' |
| 484 | --0.747011 OD b'postag:-LRB-' | 484 | +-0.753494 Supp b'+1:postag:VBN' |
| 485 | --0.750366 O b'+1:lemma:0.3' | 485 | +-0.755447 O b'lemma:\xce\xb4fur' |
| 486 | --0.761257 Anti b'+1:lemma:anti-fur' | 486 | +-0.756879 O b'+1:lemma:fecl2' |
| 487 | --0.768890 Phase b'-1:postag:JJ' | 487 | +-0.756986 pH b'postag:NN' |
| 488 | --0.791918 O b'+1:lemma:\xc2\xb0c' | 488 | +-0.757378 OD b'postag:JJ' |
| 489 | --0.792189 O b'lemma:anaerobically' | 489 | +-0.788163 O b'-1:postag:VBG' |
| 490 | --0.829072 O b'lemma:0.2' | 490 | +-0.834275 O b'-1:lemma:ml' |
| 491 | --0.870965 O b'lemma:0.3' | 491 | +-0.897819 Temp b'+1:lemma:to' |
| 492 | --0.872689 O b'lemma:purify' | 492 | +-0.897819 Temp b'+1:postag:TO' |
| 493 | --0.898705 O b'-1:postag:VBG' | 493 | +-0.904753 O b'lemma:20' |
| 494 | --0.916416 O b'+1:lemma:fecl2' | 494 | +-0.944733 O b'lemma:anaerobically' |
| 495 | --0.929519 O b'-1:lemma:~' | 495 | +-0.963571 O b'+1:lemma:in' |
| 496 | --0.964077 Air b'postag:NN' | 496 | +-0.967298 Air b'-1:postag:JJ' |
| 497 | --0.999189 O b'lemma:20' | 497 | +-0.978670 Supp b'+1:lemma:rifampicin' |
| 498 | --1.006423 O b'lemma:fecl2' | 498 | +-0.980602 Phase b'-1:postag:JJ' |
| 499 | --1.015503 O b'lemma:dpd' | 499 | +-0.986834 O b'lemma:of' |
| 500 | --1.039211 O b'lemma:anaerobic' | 500 | +-0.987936 Temp b'postag:NN' |
| 501 | --1.067901 O b'-1:lemma:dissolve' | 501 | +-1.002995 O b'postag:VBP' |
| 502 | --1.067901 O b'+1:lemma:methanol' | 502 | +-1.014836 O b'lemma:dpd' |
| 503 | --1.079142 Supp b'+1:lemma:acetate' | 503 | +-1.041168 Supp b'+1:lemma:acetate' |
| 504 | --1.086390 O b'lemma:37' | 504 | +-1.041187 O b'-1:lemma:sample' |
| 505 | --1.090519 O b'lemma:\xce\xb4fur' | 505 | +-1.042720 O b'lemma:0.2' |
| 506 | --1.110265 O b'-1:postag::' | 506 | +-1.050897 O b'+1:lemma:supplement' |
| 507 | --1.136252 O b'-1:lemma:ml' | 507 | +-1.079011 O b'+1:lemma:at' |
| 508 | --1.138020 O b'lemma:2h' | 508 | +-1.093829 O b'+1:lemma:cell' |
| 509 | --1.138020 O b'-1:lemma:additional' | 509 | +-1.096333 O b'-1:lemma:dissolve' |
| 510 | --1.184350 O b'lemma:of' | 510 | +-1.096333 O b'+1:lemma:methanol' |
| 511 | --1.210896 Supp b'-1:lemma:%' | 511 | +-1.136240 O b'+1:lemma:g/l' |
| 512 | --1.216753 O b'-1:lemma:37' | 512 | +-1.201055 O b'-1:lemma:rpob' |
| 513 | --1.220049 O b'+1:lemma:g/l' | 513 | +-1.208075 O b'lemma:2h' |
| 514 | --1.245093 O b'-1:lemma:sample' | 514 | +-1.208075 O b'-1:lemma:additional' |
| 515 | --1.280180 Air b'-1:postag:JJ' | 515 | +-1.245138 O b'-1:lemma:37' |
| 516 | --1.282705 O b'lemma:0.1' | 516 | +-1.284488 O b'lemma:0.1' |
| 517 | --1.293206 O b'+1:lemma:supplement' | 517 | +-1.307838 O b'-1:lemma:IP' |
| 518 | --1.340548 Air b'+1:postag:JJ' | 518 | +-1.367289 O b'+1:postag:VBG' |
| 519 | --1.397536 O b'+1:lemma:at' | 519 | +-1.389589 O b'+1:lemma:+' |
| 520 | --1.470536 O b'+1:lemma:in' | 520 | +-1.436423 Air b'+1:postag:JJ' |
| 521 | --1.532979 O b'+1:postag:VBG' | 521 | +-1.446071 O b'lemma:wt' |
| 522 | --1.548239 O b'-1:lemma:rpob' | 522 | +-1.450739 Supp b'-1:lemma:%' |
| 523 | --1.647386 O b'-1:lemma:ompr' | 523 | +-1.499193 O b'lemma:37' |
| 524 | --1.665792 O b'postag:VBP' | 524 | +-1.538565 O b'-1:postag::' |
| 525 | --1.714606 O b'lemma:wt' | 525 | +-1.553221 Air b'postag:NN' |
| 526 | --1.723995 O b'-1:lemma:nsrr' | 526 | +-1.648157 Anti b'postag:NNP' |
| 527 | --1.770674 Supp b'postag:JJ' | 527 | +-1.853282 O b'+1:lemma:hour' |
| 528 | --1.852907 O b'lemma:rifampicin' | 528 | +-1.858904 O b'-1:lemma:nsrr' |
| 529 | --1.859721 Anti b'postag:NNP' | 529 | +-1.884215 O b'-1:lemma:ompr' |
| 530 | --1.869393 O b'+1:lemma:+' | 530 | +-2.067974 O b'-1:lemma:2' |
| 531 | --1.873494 O b'-1:lemma:IP' | 531 | +-2.131263 O b'lemma:rifampicin' |
| 532 | --2.065639 O b'lemma:methanol' | 532 | +-2.175822 O b'+1:lemma:2' |
| 533 | --2.192016 O b'-1:lemma:2' | 533 | +-2.308282 O b'lemma:methanol' |
| 534 | --2.353663 O b'+1:lemma:2' | 534 | +-2.446120 Supp b'postag:JJ' |
| 535 | --2.354781 Phase b'postag:JJ' | 535 | +-2.454149 O b'lemma:mid-log' |
| 536 | --2.458047 O b'+1:lemma:hour' | 536 | +-2.638968 Phase b'postag:JJ' |
| 537 | --3.007939 O b'+1:lemma:1' | 537 | +-2.760556 O b'+1:lemma:1' |
| 538 | --3.831961 O b'-1:lemma:_' | 538 | +-3.707810 O b'-1:lemma:_' |
| 539 | --4.149098 O b'-1:lemma::' | 539 | +-3.997262 O b'-1:lemma::' |
| 540 | 540 | ... | ... |
CRF/reports/report_Run5_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.10611954839898095, 'c2': 0.006346156532999689} | ||
| 5 | +best CV score:0.8029791834815372 | ||
| 6 | +model size: 0.09M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.811550814808516 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.652 0.405 0.500 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.875 0.955 0.913 22 | ||
| 14 | + Med 1.000 0.842 0.914 57 | ||
| 15 | + Temp 0.800 0.889 0.842 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.842 0.914 19 | ||
| 19 | + Air 0.804 0.726 0.763 62 | ||
| 20 | + Anti 1.000 1.000 1.000 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.935 0.811 0.869 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.831 0.721 0.772 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.870 0.765 0.812 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.951338 | ||
| 32 | +OD -> OD 6.384899 | ||
| 33 | +Temp -> Temp 6.191832 | ||
| 34 | +Med -> Med 5.660137 | ||
| 35 | +Anti -> Anti 5.222338 | ||
| 36 | +Supp -> Supp 4.948395 | ||
| 37 | +Gversion -> Gversion 4.779316 | ||
| 38 | +Air -> Air 4.661973 | ||
| 39 | +Phase -> Phase 4.585606 | ||
| 40 | +O -> O 4.523040 | ||
| 41 | +Gtype -> Gtype 4.374544 | ||
| 42 | +Technique -> Technique 3.916776 | ||
| 43 | +pH -> pH 2.762443 | ||
| 44 | +Gtype -> Supp 1.647453 | ||
| 45 | +Substrain -> Gtype 1.438721 | ||
| 46 | +O -> Supp 1.197603 | ||
| 47 | +O -> Technique 1.047286 | ||
| 48 | +Technique -> Air 0.678619 | ||
| 49 | +Air -> O 0.635169 | ||
| 50 | +O -> Gtype 0.582793 | ||
| 51 | +O -> Anti 0.576502 | ||
| 52 | +Gtype -> Air 0.400088 | ||
| 53 | +Med -> O 0.380660 | ||
| 54 | +O -> Temp 0.322992 | ||
| 55 | +Temp -> O 0.199442 | ||
| 56 | +Phase -> O 0.150624 | ||
| 57 | +O -> Gversion 0.126987 | ||
| 58 | +Supp -> O 0.120279 | ||
| 59 | +O -> Med 0.081702 | ||
| 60 | +OD -> Phase 0.004611 | ||
| 61 | +Gtype -> pH 0.003342 | ||
| 62 | +O -> Phase -0.018492 | ||
| 63 | +Supp -> Gtype -0.099455 | ||
| 64 | +Technique -> O -0.160718 | ||
| 65 | +O -> OD -0.177350 | ||
| 66 | +Gtype -> O -0.254968 | ||
| 67 | +OD -> Air -0.399166 | ||
| 68 | +Technique -> Gtype -0.518986 | ||
| 69 | +Gtype -> OD -0.674743 | ||
| 70 | +O -> Air -0.909565 | ||
| 71 | +OD -> O -1.026695 | ||
| 72 | +Agit -> O -1.193723 | ||
| 73 | +Substrain -> O -1.417707 | ||
| 74 | +Phase -> OD -1.598916 | ||
| 75 | +Med -> Supp -2.026822 | ||
| 76 | + | ||
| 77 | + | ||
| 78 | +Top unlikely transitions: | ||
| 79 | +Agit -> Agit 6.951338 | ||
| 80 | +OD -> OD 6.384899 | ||
| 81 | +Temp -> Temp 6.191832 | ||
| 82 | +Med -> Med 5.660137 | ||
| 83 | +Anti -> Anti 5.222338 | ||
| 84 | +Supp -> Supp 4.948395 | ||
| 85 | +Gversion -> Gversion 4.779316 | ||
| 86 | +Air -> Air 4.661973 | ||
| 87 | +Phase -> Phase 4.585606 | ||
| 88 | +O -> O 4.523040 | ||
| 89 | +Gtype -> Gtype 4.374544 | ||
| 90 | +Technique -> Technique 3.916776 | ||
| 91 | +pH -> pH 2.762443 | ||
| 92 | +Gtype -> Supp 1.647453 | ||
| 93 | +Substrain -> Gtype 1.438721 | ||
| 94 | +O -> Supp 1.197603 | ||
| 95 | +O -> Technique 1.047286 | ||
| 96 | +Technique -> Air 0.678619 | ||
| 97 | +Air -> O 0.635169 | ||
| 98 | +O -> Gtype 0.582793 | ||
| 99 | +O -> Anti 0.576502 | ||
| 100 | +Gtype -> Air 0.400088 | ||
| 101 | +Med -> O 0.380660 | ||
| 102 | +O -> Temp 0.322992 | ||
| 103 | +Temp -> O 0.199442 | ||
| 104 | +Phase -> O 0.150624 | ||
| 105 | +O -> Gversion 0.126987 | ||
| 106 | +Supp -> O 0.120279 | ||
| 107 | +O -> Med 0.081702 | ||
| 108 | +OD -> Phase 0.004611 | ||
| 109 | +Gtype -> pH 0.003342 | ||
| 110 | +O -> Phase -0.018492 | ||
| 111 | +Supp -> Gtype -0.099455 | ||
| 112 | +Technique -> O -0.160718 | ||
| 113 | +O -> OD -0.177350 | ||
| 114 | +Gtype -> O -0.254968 | ||
| 115 | +OD -> Air -0.399166 | ||
| 116 | +Technique -> Gtype -0.518986 | ||
| 117 | +Gtype -> OD -0.674743 | ||
| 118 | +O -> Air -0.909565 | ||
| 119 | +OD -> O -1.026695 | ||
| 120 | +Agit -> O -1.193723 | ||
| 121 | +Substrain -> O -1.417707 | ||
| 122 | +Phase -> OD -1.598916 | ||
| 123 | +Med -> Supp -2.026822 | ||
| 124 | + | ||
| 125 | + | ||
| 126 | +Top positive: | ||
| 127 | +8.202551 O b'lemma:1' | ||
| 128 | +8.081205 Supp b'lemma:nitrate' | ||
| 129 | +7.724034 Phase b'lemma:stationary' | ||
| 130 | +7.139079 O b'-2:lemma:_' | ||
| 131 | +7.113779 O b'lemma:rpob' | ||
| 132 | +7.039754 Air b'lemma:aerobic' | ||
| 133 | +6.838389 Air b'lemma:anaerobic' | ||
| 134 | +6.715520 O b'lemma:2' | ||
| 135 | +6.343991 O b'lemma:3' | ||
| 136 | +6.130545 Technique b'lemma:ChIP-exo' | ||
| 137 | +5.730880 Gtype b'lemma:type' | ||
| 138 | +5.677171 Supp b'lemma:no3' | ||
| 139 | +5.464025 Supp b'lemma:pq' | ||
| 140 | +5.438992 Strain b'lemma:k-12' | ||
| 141 | +5.409079 Med b'lemma:MOPS' | ||
| 142 | +5.383170 Gtype b'-2:lemma:genotype/variation' | ||
| 143 | +5.364773 Technique b'lemma:chipseq' | ||
| 144 | +5.303901 Phase b'lemma:mid-log' | ||
| 145 | +5.273251 Substrain b'lemma:mg1655' | ||
| 146 | +5.262924 Anti b'-2:lemma:antibody' | ||
| 147 | +5.234508 O b'-1:lemma:ChIP-exo' | ||
| 148 | +5.167882 O b'lemma:_' | ||
| 149 | +5.116022 O b'+2:lemma:\xc2\xb0c' | ||
| 150 | +5.083422 Air b'lemma:Aerobic' | ||
| 151 | +4.942311 Gtype b'lemma:\xce\xb4cra' | ||
| 152 | +4.924649 Supp b'lemma:nh4cl' | ||
| 153 | +4.774563 O b'lemma:b' | ||
| 154 | +4.709841 O b'postag:IN' | ||
| 155 | +4.702565 Supp b'+1:lemma:\xc2\xb5m' | ||
| 156 | +4.687035 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 157 | +4.643920 Technique b'lemma:rna-seq' | ||
| 158 | +4.637975 Technique b'lemma:chip-seq' | ||
| 159 | +4.607255 Gtype b'+1:lemma:type' | ||
| 160 | +4.457411 OD b'lemma:od450' | ||
| 161 | +4.452366 O b'-2:lemma:flagtag' | ||
| 162 | +4.351257 O b'+2:lemma:fructose' | ||
| 163 | +4.305727 Supp b'lemma:Iron' | ||
| 164 | +4.305727 Supp b'-2:lemma:Anaerobic' | ||
| 165 | +4.270637 Med b'lemma:LB' | ||
| 166 | +4.264041 Gtype b'lemma:wt' | ||
| 167 | +4.196120 OD b'lemma:od600' | ||
| 168 | +4.164218 Supp b'lemma:acetate' | ||
| 169 | +4.136757 O b'lemma:-' | ||
| 170 | +4.109668 Med b'lemma:lb' | ||
| 171 | +4.038024 O b'lemma:.' | ||
| 172 | +4.038024 O b'postag:.' | ||
| 173 | +4.011633 O b'lemma:a' | ||
| 174 | +4.001990 Gversion b'lemma:chip-seq' | ||
| 175 | +3.980816 O b'lemma:Cra' | ||
| 176 | +3.888163 O b'+1:postag:RB' | ||
| 177 | +3.882391 Gtype b'-2:lemma:genotype' | ||
| 178 | +3.870554 O b'lemma:rep1' | ||
| 179 | +3.786732 O b'-1:lemma:tag' | ||
| 180 | +3.784821 Gtype b'lemma:flag-tag' | ||
| 181 | +3.784821 Gtype b'-1:lemma:c-terminal' | ||
| 182 | +3.784385 Gtype b'-2:lemma:affyexp' | ||
| 183 | +3.777053 Gtype b'lemma:\xe2\x88\x86' | ||
| 184 | +3.728794 O b'+2:lemma:cra' | ||
| 185 | +3.679265 Gtype b'lemma:\xce\xb4fur' | ||
| 186 | +3.669557 Gtype b'-2:lemma:delta' | ||
| 187 | +3.559327 Supp b'lemma:glucose' | ||
| 188 | +3.549105 Gtype b'lemma:nsrr' | ||
| 189 | +3.543860 Supp b'lemma:iptg' | ||
| 190 | +3.508675 Supp b'lemma:arginine' | ||
| 191 | +3.463556 O b'lemma:Custom' | ||
| 192 | +3.436560 O b'-1:lemma:media' | ||
| 193 | +3.426544 O b'-2:lemma:myc' | ||
| 194 | +3.416590 O b'lemma:oxyr' | ||
| 195 | +3.416144 O b'postag:VBN' | ||
| 196 | +3.379211 Air b'-1:lemma:ChIP-Seq' | ||
| 197 | +3.361106 O b'postag::' | ||
| 198 | +3.327937 O b'lemma:culture' | ||
| 199 | +3.281566 Air b'-2:lemma:IP' | ||
| 200 | +3.243630 Gtype b'+1:lemma:with' | ||
| 201 | +3.233953 Supp b'-2:lemma:purr' | ||
| 202 | +3.177625 Supp b'-1:lemma:Cra' | ||
| 203 | +3.154838 Supp b'lemma:Fe' | ||
| 204 | +3.106755 Gtype b'lemma:\xce\xb4ompr' | ||
| 205 | +3.091806 Technique b'+2:lemma:ph5' | ||
| 206 | +3.085874 Supp b'+1:lemma:1' | ||
| 207 | +3.076198 Technique b'lemma:rnaseq' | ||
| 208 | +3.067570 O b'lemma:purr' | ||
| 209 | +3.056379 O b'+1:postag:VBP' | ||
| 210 | +2.992692 Med b'+2:lemma:b2' | ||
| 211 | +2.989554 Supp b'lemma:nacl' | ||
| 212 | +2.977780 O b'lemma:rep2' | ||
| 213 | +2.962704 O b'-1:lemma:0.3' | ||
| 214 | +2.933202 Supp b'lemma:fructose' | ||
| 215 | +2.929584 Temp b'-1:lemma:sample' | ||
| 216 | +2.914017 pH b'lemma:ph5' | ||
| 217 | +2.914017 pH b'+1:lemma:.5' | ||
| 218 | +2.909617 O b'lemma:CEL' | ||
| 219 | +2.897129 Supp b'+1:lemma:_' | ||
| 220 | +2.888676 O b'-2:lemma:~' | ||
| 221 | +2.886570 Supp b'+1:lemma:2' | ||
| 222 | +2.868631 Technique b'lemma:ChIP-Seq' | ||
| 223 | +2.863602 Supp b'lemma:rifampicin' | ||
| 224 | +2.844607 O b'-1:lemma:type' | ||
| 225 | +2.822375 O b'lemma:argr' | ||
| 226 | +2.738012 O b'lemma:Lrp' | ||
| 227 | +2.736527 Supp b'-2:lemma:shake' | ||
| 228 | +2.722390 O b'-1:lemma:anaerobic' | ||
| 229 | +2.722131 Technique b'-2:lemma:Fur' | ||
| 230 | +2.717816 Gtype b'-1:lemma:rpob' | ||
| 231 | +2.702398 O b'-1:lemma:\xc2\xb0c' | ||
| 232 | +2.697548 Gtype b'-1:lemma:ptac' | ||
| 233 | +2.686027 Gtype b'lemma:\xce\xb4soxs' | ||
| 234 | +2.672826 O b'-2:lemma:ChIP-Seq' | ||
| 235 | +2.652232 O b'lemma:s' | ||
| 236 | +2.640574 Temp b'lemma:43' | ||
| 237 | +2.616265 O b'-1:lemma:glucose' | ||
| 238 | +2.604674 O b'-2:lemma:fructose' | ||
| 239 | +2.596037 Gversion b'lemma:.2' | ||
| 240 | +2.596037 Gversion b'-1:lemma:u00096' | ||
| 241 | +2.593526 Supp b'+2:lemma:rifampicin' | ||
| 242 | +2.593425 O b'+2:lemma:chipseq' | ||
| 243 | +2.574956 O b'lemma:soxs' | ||
| 244 | +2.574956 O b'lemma:soxr' | ||
| 245 | +2.572085 O b'lemma:\xcf\x8332' | ||
| 246 | +2.560311 pH b'lemma:.5' | ||
| 247 | +2.560311 pH b'-1:lemma:ph5' | ||
| 248 | +2.558026 Anti b'+1:lemma:antibody' | ||
| 249 | +2.548716 O b'+1:lemma:chip-seq' | ||
| 250 | +2.547807 O b'+2:lemma:polyclonal' | ||
| 251 | +2.547779 O b'postag:DT' | ||
| 252 | +2.547476 Gtype b'lemma:wild-type' | ||
| 253 | +2.542568 Gtype b'lemma:ptac' | ||
| 254 | +2.496299 Temp b'-1:lemma:\xcf\x8332' | ||
| 255 | +2.482714 O b'lemma:condition' | ||
| 256 | +2.450763 Supp b'lemma:dpd' | ||
| 257 | +2.436790 OD b'lemma:0.3' | ||
| 258 | +2.432687 Gtype b'lemma:dfnr' | ||
| 259 | +2.425186 O b'lemma:affyexp' | ||
| 260 | +2.402512 OD b'+1:lemma:stationary' | ||
| 261 | +2.396707 O b'+1:postag:NNP' | ||
| 262 | +2.395525 O b'-1:lemma:Aerobic' | ||
| 263 | +2.390930 O b'lemma:chip' | ||
| 264 | +2.365269 Med b'+2:lemma:with' | ||
| 265 | +2.349317 O b'+1:lemma:condition' | ||
| 266 | +2.347569 Med b'+2:lemma:b1' | ||
| 267 | +2.323852 Gtype b'+1:lemma:flagtag' | ||
| 268 | +2.285051 Air b'-2:postag:SYM' | ||
| 269 | +2.270519 Med b'+1:lemma:0.4' | ||
| 270 | +2.267409 Air b'postag:RB' | ||
| 271 | +2.227138 Med b'lemma:m63' | ||
| 272 | +2.221466 Supp b'-2:lemma:Lrp' | ||
| 273 | +2.211681 Gtype b'lemma:\xce\xb4soxr' | ||
| 274 | +2.198402 Technique b'-1:lemma:IP' | ||
| 275 | +2.191991 Temp b'-1:lemma:43' | ||
| 276 | +2.190945 Technique b'-1:lemma:chip-exo' | ||
| 277 | +2.177040 Technique b'-1:lemma:input' | ||
| 278 | +2.164912 O b'lemma:ompr' | ||
| 279 | +2.159564 Supp b'+2:lemma:for' | ||
| 280 | +2.147969 Gversion b'-2:lemma:build' | ||
| 281 | +2.138399 Supp b'-1:lemma:with' | ||
| 282 | +2.130975 Gversion b'lemma:u00096' | ||
| 283 | +2.130975 Gversion b'+1:lemma:.2' | ||
| 284 | +2.116889 Air b'+2:lemma:L' | ||
| 285 | +2.109271 O b'+1:lemma:anti-fur' | ||
| 286 | +2.094403 Phase b'-2:lemma:phase' | ||
| 287 | +2.088072 Anti b'+2:lemma:antibody' | ||
| 288 | +2.069606 Temp b'-1:lemma:37' | ||
| 289 | +2.062716 OD b'+2:lemma:stationary' | ||
| 290 | +2.062298 Supp b'-2:lemma:supplement' | ||
| 291 | +2.054041 Temp b'lemma:\xc2\xb0c' | ||
| 292 | +2.051199 Supp b'lemma:20' | ||
| 293 | +2.046096 Med b'+1:lemma:g/l' | ||
| 294 | +2.033023 Temp b'lemma:37' | ||
| 295 | +2.031219 Gversion b'lemma:nc' | ||
| 296 | +2.026359 Phase b'-1:lemma:mid-log' | ||
| 297 | +2.022551 Temp b'-2:lemma:\xcf\x8332' | ||
| 298 | +2.021988 O b'postag:CC' | ||
| 299 | +2.012689 Med b'-2:lemma:50' | ||
| 300 | +1.995640 O b'lemma:with' | ||
| 301 | +1.988961 Supp b'-2:postag:VBG' | ||
| 302 | +1.987668 Temp b'+1:lemma:\xc2\xb0c' | ||
| 303 | +1.983838 Med b'lemma:media' | ||
| 304 | +1.966093 Gtype b'+1:lemma:ph5' | ||
| 305 | +1.966093 Gtype b'+2:lemma:.5' | ||
| 306 | +1.929947 O b'+1:lemma:od600' | ||
| 307 | +1.925489 Gtype b'+2:lemma:glucose' | ||
| 308 | +1.923491 Gversion b'-2:lemma:nc' | ||
| 309 | +1.919933 O b'-2:lemma:medium' | ||
| 310 | +1.916487 Technique b'+1:lemma:chip-exo' | ||
| 311 | +1.915937 O b'lemma:at' | ||
| 312 | +1.903350 pH b'+1:postag:CD' | ||
| 313 | +1.881335 O b'-2:lemma:co2' | ||
| 314 | +1.880331 Air b'+2:lemma:37' | ||
| 315 | +1.842022 O b'-1:lemma:l1' | ||
| 316 | +1.835960 Gtype b'lemma:arca8myc' | ||
| 317 | +1.835960 Gtype b'-2:lemma:chip-arca' | ||
| 318 | +1.825949 O b'+1:lemma:sparging' | ||
| 319 | +1.820188 O b'lemma:Fur' | ||
| 320 | +1.816501 Med b'postag:NNP' | ||
| 321 | +1.816366 Temp b'-2:lemma:keep' | ||
| 322 | +1.812523 Substrain b'+1:lemma:phtpg' | ||
| 323 | +1.806914 Med b'lemma:glucose' | ||
| 324 | +1.798594 O b'lemma:for' | ||
| 325 | +1.790149 Supp b'-1:lemma:+' | ||
| 326 | +1.786505 O b'-1:lemma:lb' | ||
| 327 | + | ||
| 328 | + | ||
| 329 | +Top negative: | ||
| 330 | +-0.056377 O b'+2:lemma:follow' | ||
| 331 | +-0.057834 O b'-2:postag:RB' | ||
| 332 | +-0.062691 O b'lemma:lb' | ||
| 333 | +-0.062694 O b'+2:lemma:co2' | ||
| 334 | +-0.063082 Agit b'postag:NN' | ||
| 335 | +-0.063895 O b'-2:lemma:stir' | ||
| 336 | +-0.066451 O b'+1:lemma:or' | ||
| 337 | +-0.069881 Air b'-2:lemma:or' | ||
| 338 | +-0.071179 Supp b'+1:postag:-RRB-' | ||
| 339 | +-0.073541 O b'+1:lemma:300' | ||
| 340 | +-0.076445 OD b'+2:lemma:~' | ||
| 341 | +-0.078449 O b'-2:lemma:paraquat' | ||
| 342 | +-0.079932 OD b'+1:postag:CC' | ||
| 343 | +-0.080336 OD b'lemma:~' | ||
| 344 | +-0.082164 O b'-1:lemma:until' | ||
| 345 | +-0.087626 O b'+2:lemma:supplement' | ||
| 346 | +-0.089622 O b'lemma:e.' | ||
| 347 | +-0.092349 O b'-1:lemma:1' | ||
| 348 | +-0.093669 O b'lemma:grow' | ||
| 349 | +-0.094841 Med b'+1:postag:IN' | ||
| 350 | +-0.097229 Supp b'-2:postag:IN' | ||
| 351 | +-0.101825 Air b'postag:CD' | ||
| 352 | +-0.103517 Anti b'+1:postag:JJ' | ||
| 353 | +-0.105803 O b'+2:lemma:od600' | ||
| 354 | +-0.108906 O b'lemma:co2' | ||
| 355 | +-0.111524 Supp b'-2:postag:VBN' | ||
| 356 | +-0.118531 Agit b'-1:postag:NN' | ||
| 357 | +-0.120507 O b'-2:lemma:cell' | ||
| 358 | +-0.121204 Air b'lemma:70' | ||
| 359 | +-0.124675 O b'-1:lemma:0.1' | ||
| 360 | +-0.124675 O b'+2:lemma:fecl2' | ||
| 361 | +-0.126624 O b'+2:lemma:for' | ||
| 362 | +-0.128419 Air b'+1:lemma:70' | ||
| 363 | +-0.128789 O b'lemma:150' | ||
| 364 | +-0.128789 O b'+1:lemma:mg/ml' | ||
| 365 | +-0.128789 O b'-2:lemma:concentration' | ||
| 366 | +-0.130352 O b'-2:lemma:nh4cl' | ||
| 367 | +-0.132047 O b'+2:lemma:37' | ||
| 368 | +-0.135046 O b'-1:postag:VBN' | ||
| 369 | +-0.138694 Med b'+2:postag:VBN' | ||
| 370 | +-0.138737 O b'lemma:\xc2\xb0c' | ||
| 371 | +-0.140991 Gtype b'lemma:_' | ||
| 372 | +-0.145854 O b'-1:postag:IN' | ||
| 373 | +-0.145950 O b'-2:lemma:genome' | ||
| 374 | +-0.147428 O b'+2:lemma:iptg' | ||
| 375 | +-0.147810 O b'-1:lemma:cra' | ||
| 376 | +-0.155455 Air b'+2:lemma:70' | ||
| 377 | +-0.156201 Supp b'lemma:and' | ||
| 378 | +-0.158149 O b'+1:postag:JJ' | ||
| 379 | +-0.164480 O b'+1:postag:CD' | ||
| 380 | +-0.172333 OD b'+1:postag:CD' | ||
| 381 | +-0.174063 O b'+2:lemma:.' | ||
| 382 | +-0.174063 O b'+2:postag:.' | ||
| 383 | +-0.178683 Supp b'+2:lemma:-rrb-' | ||
| 384 | +-0.181783 O b'-1:lemma:ml' | ||
| 385 | +-0.184867 O b'-2:postag:VBG' | ||
| 386 | +-0.187294 O b'+2:lemma:anaerobically' | ||
| 387 | +-0.187906 Supp b'-1:postag:NN' | ||
| 388 | +-0.188626 Gtype b'-2:postag:IN' | ||
| 389 | +-0.197726 O b'-1:postag:-LRB-' | ||
| 390 | +-0.198187 O b'-2:lemma:dna' | ||
| 391 | +-0.204690 Air b'+2:postag:IN' | ||
| 392 | +-0.204920 O b'+2:lemma:cell' | ||
| 393 | +-0.225831 O b'lemma:\xce\xb4fur' | ||
| 394 | +-0.230974 O b'-1:lemma:um' | ||
| 395 | +-0.230974 O b'+1:lemma:paraquat' | ||
| 396 | +-0.236573 O b'lemma:of' | ||
| 397 | +-0.240385 O b'-1:lemma:iptg' | ||
| 398 | +-0.244742 Supp b'+2:postag:-RRB-' | ||
| 399 | +-0.251781 O b'-1:lemma:rifampicin' | ||
| 400 | +-0.263047 O b'+1:postag:IN' | ||
| 401 | +-0.263702 O b'+1:postag:VBG' | ||
| 402 | +-0.268568 O b'lemma:20' | ||
| 403 | +-0.274794 O b'+2:lemma:add' | ||
| 404 | +-0.280223 O b'+2:postag:RB' | ||
| 405 | +-0.291400 Supp b'+2:lemma:1' | ||
| 406 | +-0.296141 Phase b'-1:postag:NN' | ||
| 407 | +-0.297378 O b'-2:lemma:dpd' | ||
| 408 | +-0.301496 Phase b'-2:postag:NN' | ||
| 409 | +-0.307882 Supp b'-2:lemma:grow' | ||
| 410 | +-0.308671 O b'-2:lemma:anaerobically' | ||
| 411 | +-0.316370 O b'+1:lemma:mg1655' | ||
| 412 | +-0.317713 O b'-2:lemma:until' | ||
| 413 | +-0.327378 O b'-1:lemma:from' | ||
| 414 | +-0.329280 Med b'-2:lemma:in' | ||
| 415 | +-0.331478 O b'+1:lemma:until' | ||
| 416 | +-0.343943 O b'lemma:k-12' | ||
| 417 | +-0.346692 OD b'+1:postag:NN' | ||
| 418 | +-0.347195 Supp b'-1:postag:VBG' | ||
| 419 | +-0.348433 O b'+1:lemma:fecl2' | ||
| 420 | +-0.348433 O b'-2:lemma:0.1' | ||
| 421 | +-0.358964 O b'-2:lemma::' | ||
| 422 | +-0.362392 pH b'postag:NN' | ||
| 423 | +-0.364550 OD b'lemma:-lrb-' | ||
| 424 | +-0.366840 Anti b'+1:lemma:anti-fur' | ||
| 425 | +-0.372342 O b'-1:lemma:grow' | ||
| 426 | +-0.376200 O b'+2:postag:-RRB-' | ||
| 427 | +-0.383946 O b'lemma:od600' | ||
| 428 | +-0.387364 Supp b'-2:postag:NN' | ||
| 429 | +-0.394053 Anti b'+2:lemma:polyclonal' | ||
| 430 | +-0.398869 Supp b'-1:postag:NNP' | ||
| 431 | +-0.402792 O b'-1:lemma:od600' | ||
| 432 | +-0.405894 O b'postag:RB' | ||
| 433 | +-0.407413 O b'-1:lemma:mid-log' | ||
| 434 | +-0.417577 O b'+2:lemma:fnr' | ||
| 435 | +-0.419538 O b'lemma:dissolve' | ||
| 436 | +-0.419538 O b'+2:lemma:methanol' | ||
| 437 | +-0.420729 O b'-2:postag:DT' | ||
| 438 | +-0.427686 Gtype b'-1:postag:NN' | ||
| 439 | +-0.433305 O b'+1:lemma:_' | ||
| 440 | +-0.440572 O b'+1:lemma:\xc2\xb0c' | ||
| 441 | +-0.441074 Supp b'+1:lemma:rifampicin' | ||
| 442 | +-0.446067 Med b'+1:postag:NN' | ||
| 443 | +-0.453325 Phase b'+1:postag:NN' | ||
| 444 | +-0.453738 O b'-1:lemma:co2' | ||
| 445 | +-0.454368 O b'lemma:0.3' | ||
| 446 | +-0.465224 OD b'-2:postag:IN' | ||
| 447 | +-0.467206 O b'-2:postag:SYM' | ||
| 448 | +-0.469619 Supp b'postag:CC' | ||
| 449 | +-0.480615 O b'lemma:anaerobically' | ||
| 450 | +-0.482560 O b'+2:lemma:reference' | ||
| 451 | +-0.492293 O b'-2:lemma:rpob' | ||
| 452 | +-0.507584 O b'+1:lemma:hour' | ||
| 453 | +-0.517359 O b'lemma:glucose' | ||
| 454 | +-0.518184 O b'-2:lemma:a' | ||
| 455 | +-0.523810 O b'+1:lemma:supplement' | ||
| 456 | +-0.529465 O b'lemma:dpd' | ||
| 457 | +-0.535094 O b'lemma:anaerobic' | ||
| 458 | +-0.535327 Supp b'+1:lemma:acetate' | ||
| 459 | +-0.543209 Supp b'+2:postag:NN' | ||
| 460 | +-0.549417 O b'lemma:aerobically' | ||
| 461 | +-0.550622 O b'+1:lemma:+' | ||
| 462 | +-0.571540 O b'lemma:media' | ||
| 463 | +-0.573484 O b'+2:lemma:antibody' | ||
| 464 | +-0.582564 O b'-1:lemma:dissolve' | ||
| 465 | +-0.582564 O b'+1:lemma:methanol' | ||
| 466 | +-0.591022 O b'lemma:0.1' | ||
| 467 | +-0.601166 Air b'+1:postag:JJ' | ||
| 468 | +-0.618396 O b'-2:lemma:aerobically' | ||
| 469 | +-0.620494 O b'lemma:methanol' | ||
| 470 | +-0.620494 O b'-2:lemma:dissolve' | ||
| 471 | +-0.625501 O b'lemma:0.2' | ||
| 472 | +-0.627314 O b'-1:lemma:ompr' | ||
| 473 | +-0.627416 Temp b'-1:lemma:\xc2\xb0c' | ||
| 474 | +-0.631755 Air b'-1:postag:JJ' | ||
| 475 | +-0.641710 O b'+1:lemma:minimal' | ||
| 476 | +-0.642246 O b'lemma:fecl2' | ||
| 477 | +-0.651512 O b'lemma:rifampicin' | ||
| 478 | +-0.655237 O b'lemma:\xe2\x88\x86' | ||
| 479 | +-0.663186 O b'-1:lemma:sample' | ||
| 480 | +-0.665432 O b'+2:lemma:+' | ||
| 481 | +-0.669192 O b'lemma:phase' | ||
| 482 | +-0.678711 O b'lemma:37' | ||
| 483 | +-0.681855 O b'+1:lemma:g/l' | ||
| 484 | +-0.682703 O b'-1:lemma:37' | ||
| 485 | +-0.698027 O b'+1:postag:NNS' | ||
| 486 | +-0.702726 Supp b'+2:lemma:2' | ||
| 487 | +-0.715445 O b'-1:lemma:0.2' | ||
| 488 | +-0.734463 Med b'-1:postag:NN' | ||
| 489 | +-0.741932 O b'lemma:2h' | ||
| 490 | +-0.741932 O b'-1:lemma:additional' | ||
| 491 | +-0.743025 Supp b'-2:postag:JJ' | ||
| 492 | +-0.769586 O b'+1:lemma:phase' | ||
| 493 | +-0.772776 OD b'-2:postag:JJ' | ||
| 494 | +-0.774462 O b'+2:lemma:medium' | ||
| 495 | +-0.795476 O b'-2:lemma:IP' | ||
| 496 | +-0.799045 O b'-1:lemma:~' | ||
| 497 | +-0.821552 O b'+2:lemma:mid-log' | ||
| 498 | +-0.839684 OD b'postag:-LRB-' | ||
| 499 | +-0.858529 O b'-2:lemma:rifampicin' | ||
| 500 | +-0.862954 O b'-1:postag::' | ||
| 501 | +-0.882732 Supp b'+2:postag:NNS' | ||
| 502 | +-0.895274 Temp b'postag:NN' | ||
| 503 | +-0.947318 Anti b'+2:postag:JJ' | ||
| 504 | +-0.959235 Phase b'-1:postag:JJ' | ||
| 505 | +-0.977788 O b'-1:lemma:rpob' | ||
| 506 | +-0.978443 O b'lemma:mid-log' | ||
| 507 | +-0.988760 O b'-1:postag:VBG' | ||
| 508 | +-1.006314 O b'-2:lemma:50' | ||
| 509 | +-1.041256 O b'-1:lemma:nsrr' | ||
| 510 | +-1.065402 O b'+2:lemma:b' | ||
| 511 | +-1.086805 O b'-2:lemma:supplement' | ||
| 512 | +-1.093802 O b'+1:lemma:cell' | ||
| 513 | +-1.098577 O b'+2:lemma:rifampicin' | ||
| 514 | +-1.120238 O b'-1:lemma:IP' | ||
| 515 | +-1.200121 Med b'-2:postag:VBN' | ||
| 516 | +-1.376159 Air b'postag:NN' | ||
| 517 | +-1.479670 O b'+1:lemma:in' | ||
| 518 | +-1.485332 Phase b'postag:JJ' | ||
| 519 | +-1.570263 O b'lemma:wt' | ||
| 520 | +-1.570821 Supp b'postag:JJ' | ||
| 521 | +-1.809959 Anti b'postag:NNP' | ||
| 522 | +-1.929723 O b'-1:lemma:2' | ||
| 523 | +-2.027837 O b'+1:lemma:at' | ||
| 524 | +-2.145834 O b'-2:lemma:phase' | ||
| 525 | +-2.516491 O b'+1:lemma:2' | ||
| 526 | +-2.632073 Supp b'+2:postag:CD' | ||
| 527 | +-3.112250 O b'+1:lemma:1' | ||
| 528 | +-4.352391 O b'-1:lemma::' | ||
| 529 | +-4.597643 O b'-1:lemma:_' | ||
| 530 | + |
CRF/reports/report_Run5_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.06596113672627639, 'c2': 0.005613954965247502} | ||
| 5 | +best CV score:0.8018183916317536 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7935906805413363 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.803 0.860 0.831 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.947 0.973 19 | ||
| 19 | + Air 0.902 0.742 0.814 62 | ||
| 20 | + Anti 0.571 0.444 0.500 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.865 0.783 0.822 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.830 0.684 0.750 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.867 0.748 0.794 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.810185 | ||
| 32 | +OD -> OD 6.187635 | ||
| 33 | +Temp -> Temp 5.829357 | ||
| 34 | +Med -> Med 5.699279 | ||
| 35 | +Anti -> Anti 5.664227 | ||
| 36 | +Air -> Air 5.035921 | ||
| 37 | +Phase -> Phase 4.898803 | ||
| 38 | +Gversion -> Gversion 4.861231 | ||
| 39 | +O -> O 4.770492 | ||
| 40 | +Gtype -> Gtype 4.725413 | ||
| 41 | +Supp -> Supp 4.444377 | ||
| 42 | +Technique -> Technique 4.039464 | ||
| 43 | +pH -> pH 2.490113 | ||
| 44 | +O -> Supp 1.657684 | ||
| 45 | +Substrain -> Gtype 1.602926 | ||
| 46 | +O -> Technique 1.346731 | ||
| 47 | +Gtype -> Supp 1.341693 | ||
| 48 | +O -> Gtype 1.213701 | ||
| 49 | +O -> Temp 0.759700 | ||
| 50 | +Technique -> Air 0.709582 | ||
| 51 | +Air -> O 0.679733 | ||
| 52 | +O -> Anti 0.628958 | ||
| 53 | +Gtype -> pH 0.381737 | ||
| 54 | +OD -> Phase 0.217695 | ||
| 55 | +Gtype -> Air 0.206619 | ||
| 56 | +O -> Gversion 0.164188 | ||
| 57 | +O -> Med 0.158358 | ||
| 58 | +Med -> O 0.068822 | ||
| 59 | +O -> Strain 0.037849 | ||
| 60 | +O -> Phase 0.019143 | ||
| 61 | +Temp -> O 0.000267 | ||
| 62 | +Supp -> Anti -0.000426 | ||
| 63 | +Gversion -> O -0.017952 | ||
| 64 | +Anti -> OD -0.023479 | ||
| 65 | +Air -> Temp -0.064389 | ||
| 66 | +Strain -> O -0.068951 | ||
| 67 | +Phase -> Air -0.097477 | ||
| 68 | +Temp -> Med -0.130697 | ||
| 69 | +Supp -> Gversion -0.132660 | ||
| 70 | +Gtype -> Gversion -0.152489 | ||
| 71 | +Supp -> Temp -0.180122 | ||
| 72 | +O -> OD -0.195607 | ||
| 73 | +Anti -> O -0.203415 | ||
| 74 | +Supp -> Technique -0.213129 | ||
| 75 | +Supp -> OD -0.295829 | ||
| 76 | +Technique -> pH -0.297966 | ||
| 77 | +Air -> Phase -0.309467 | ||
| 78 | +Gtype -> Med -0.371622 | ||
| 79 | +Phase -> O -0.401213 | ||
| 80 | +Technique -> O -0.444318 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Air -> O 0.679733 | ||
| 85 | +O -> Anti 0.628958 | ||
| 86 | +Gtype -> pH 0.381737 | ||
| 87 | +OD -> Phase 0.217695 | ||
| 88 | +Gtype -> Air 0.206619 | ||
| 89 | +O -> Gversion 0.164188 | ||
| 90 | +O -> Med 0.158358 | ||
| 91 | +Med -> O 0.068822 | ||
| 92 | +O -> Strain 0.037849 | ||
| 93 | +O -> Phase 0.019143 | ||
| 94 | +Temp -> O 0.000267 | ||
| 95 | +Supp -> Anti -0.000426 | ||
| 96 | +Gversion -> O -0.017952 | ||
| 97 | +Anti -> OD -0.023479 | ||
| 98 | +Air -> Temp -0.064389 | ||
| 99 | +Strain -> O -0.068951 | ||
| 100 | +Phase -> Air -0.097477 | ||
| 101 | +Temp -> Med -0.130697 | ||
| 102 | +Supp -> Gversion -0.132660 | ||
| 103 | +Gtype -> Gversion -0.152489 | ||
| 104 | +Supp -> Temp -0.180122 | ||
| 105 | +O -> OD -0.195607 | ||
| 106 | +Anti -> O -0.203415 | ||
| 107 | +Supp -> Technique -0.213129 | ||
| 108 | +Supp -> OD -0.295829 | ||
| 109 | +Technique -> pH -0.297966 | ||
| 110 | +Air -> Phase -0.309467 | ||
| 111 | +Gtype -> Med -0.371622 | ||
| 112 | +Phase -> O -0.401213 | ||
| 113 | +Technique -> O -0.444318 | ||
| 114 | +OD -> Gtype -0.458964 | ||
| 115 | +Air -> Med -0.484691 | ||
| 116 | +Supp -> O -0.486623 | ||
| 117 | +OD -> Air -0.565502 | ||
| 118 | +Technique -> OD -0.598899 | ||
| 119 | +Technique -> Gtype -0.612194 | ||
| 120 | +Air -> OD -0.617091 | ||
| 121 | +Supp -> Air -0.672649 | ||
| 122 | +Gtype -> O -0.732894 | ||
| 123 | +OD -> Med -0.783942 | ||
| 124 | +O -> Air -0.841156 | ||
| 125 | +Gtype -> Anti -0.881159 | ||
| 126 | +Air -> Supp -0.895933 | ||
| 127 | +Agit -> O -0.971277 | ||
| 128 | +Gtype -> OD -1.088787 | ||
| 129 | +OD -> O -1.113905 | ||
| 130 | +Supp -> Med -1.253584 | ||
| 131 | +Substrain -> O -1.723672 | ||
| 132 | +Phase -> OD -2.084990 | ||
| 133 | +Med -> Supp -2.134929 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +9.803739 Supp b'lemma:Iron' | ||
| 138 | +9.580173 O b'lemma:_' | ||
| 139 | +8.154870 O b'lemma:1' | ||
| 140 | +7.967307 Phase b'lemma:stationary' | ||
| 141 | +7.817188 Technique b'lemma:ChIP-exo' | ||
| 142 | +7.499968 Air b'lemma:anaerobic' | ||
| 143 | +7.345897 Supp b'lemma:nitrate' | ||
| 144 | +7.255329 Med b'lemma:MOPS' | ||
| 145 | +7.049720 Strain b'lemma:k-12' | ||
| 146 | +6.904427 Air b'lemma:aerobic' | ||
| 147 | +6.841300 O b'lemma:rpob' | ||
| 148 | +6.768590 O b'lemma:2' | ||
| 149 | +6.737063 Technique b'lemma:chipseq' | ||
| 150 | +6.360291 O b'-1:lemma:tag' | ||
| 151 | +6.349470 Supp b'lemma:pq' | ||
| 152 | +6.300045 Gtype b'lemma:\xce\xb4cra' | ||
| 153 | +6.186808 O b'lemma:3' | ||
| 154 | +6.179446 O b'-1:lemma:ChIP-exo' | ||
| 155 | +6.005364 Air b'-1:lemma:ChIP-Seq' | ||
| 156 | +5.920885 Gversion b'lemma:asm584v2' | ||
| 157 | +5.896974 Air b'lemma:Aerobic' | ||
| 158 | +5.722661 Gtype b'lemma:flag-tag' | ||
| 159 | +5.722661 Gtype b'-1:lemma:c-terminal' | ||
| 160 | +5.531927 OD b'lemma:od600' | ||
| 161 | +5.514469 Med b'lemma:LB' | ||
| 162 | +5.500899 O b'lemma:Cra' | ||
| 163 | +5.490395 O b'lemma:rep1' | ||
| 164 | +5.429405 Gtype b'lemma:arca8myc' | ||
| 165 | +5.319893 Substrain b'lemma:mg1655' | ||
| 166 | +5.281725 O b'lemma:rep2' | ||
| 167 | +5.261435 O b'lemma:Custom' | ||
| 168 | +5.225717 Supp b'+1:lemma:\xc2\xb5m' | ||
| 169 | +5.209658 Gtype b'lemma:delta-arca' | ||
| 170 | +5.179292 Gtype b'lemma:type' | ||
| 171 | +5.158663 O b'lemma:b' | ||
| 172 | +5.112757 Supp b'lemma:nh4cl' | ||
| 173 | +5.101092 O b'lemma:rep3' | ||
| 174 | +5.039392 OD b'lemma:od450' | ||
| 175 | +5.020295 Med b'lemma:lb' | ||
| 176 | +5.002221 O b'-1:lemma:0.3-0.35' | ||
| 177 | +4.965187 Supp b'lemma:glucose' | ||
| 178 | +4.956435 Gtype b'lemma:fnr8myc' | ||
| 179 | +4.954144 O b'postag::' | ||
| 180 | +4.945827 Technique b'lemma:rna-seq' | ||
| 181 | +4.916169 OD b'+1:lemma:stationary' | ||
| 182 | +4.892519 Gtype b'lemma:wt' | ||
| 183 | +4.870877 Supp b'lemma:Fe' | ||
| 184 | +4.839544 Gtype b'+1:lemma:type' | ||
| 185 | +4.839112 O b'lemma:a' | ||
| 186 | +4.816421 Supp b'lemma:acetate' | ||
| 187 | +4.800826 O b'lemma:for' | ||
| 188 | +4.795011 O b'-1:lemma:Aerobic' | ||
| 189 | +4.749012 O b'lemma:\xcf\x8332' | ||
| 190 | +4.703876 Anti b'lemma:none' | ||
| 191 | +4.687916 Gversion b'lemma:nc' | ||
| 192 | +4.679745 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 193 | +4.658460 O b'postag:IN' | ||
| 194 | +4.499779 Gtype b'lemma:delta-fnr' | ||
| 195 | +4.488425 Supp b'lemma:rifampicin' | ||
| 196 | +4.420970 Technique b'lemma:ChIP-Seq' | ||
| 197 | +4.383863 O b'lemma:.' | ||
| 198 | +4.383863 O b'postag:.' | ||
| 199 | +4.370053 O b'+1:lemma:od600' | ||
| 200 | +4.356499 O b'-1:lemma:glucose' | ||
| 201 | +4.332569 Anti b'lemma:seqa' | ||
| 202 | +4.328668 Supp b'lemma:no3' | ||
| 203 | +4.297407 Med b'+1:lemma:0.4' | ||
| 204 | +4.276695 Supp b'-1:lemma:Cra' | ||
| 205 | +4.206385 Strain b'+1:lemma:substr' | ||
| 206 | +4.200724 Gtype b'lemma:\xe2\x88\x86' | ||
| 207 | +4.199179 Phase b'lemma:mid-log' | ||
| 208 | +4.192968 Gtype b'lemma:\xce\xb4fur' | ||
| 209 | +4.176687 Technique b'lemma:rnaseq' | ||
| 210 | +4.174399 Technique b'lemma:chip-seq' | ||
| 211 | +4.163064 O b'-1:lemma:anaerobic' | ||
| 212 | +4.079966 Supp b'lemma:dpd' | ||
| 213 | +4.071291 O b'lemma:-' | ||
| 214 | +4.042539 Gtype b'lemma:nsrr' | ||
| 215 | +4.040900 O b'+1:postag:RB' | ||
| 216 | +3.961200 Anti b'lemma:anti-rpos' | ||
| 217 | +3.949739 Supp b'lemma:fructose' | ||
| 218 | +3.943560 Supp b'lemma:arginine' | ||
| 219 | +3.920546 O b'lemma:with' | ||
| 220 | +3.906842 O b'lemma:or' | ||
| 221 | +3.867183 Gversion b'lemma:000913' | ||
| 222 | +3.852346 Supp b'+1:lemma:1' | ||
| 223 | +3.844501 Vess b'lemma:flask' | ||
| 224 | +3.844501 Vess b'-1:lemma:warm' | ||
| 225 | +3.833652 O b'lemma:CEL' | ||
| 226 | +3.821792 Anti b'lemma:anti-myc' | ||
| 227 | +3.754133 Gversion b'-1:lemma:nc' | ||
| 228 | +3.739933 pH b'lemma:ph5' | ||
| 229 | +3.739933 pH b'+1:lemma:.5' | ||
| 230 | +3.707305 Temp b'-1:lemma:\xcf\x8332' | ||
| 231 | +3.705406 O b'lemma:chip' | ||
| 232 | +3.697004 O b'-1:lemma:type' | ||
| 233 | +3.688398 Med b'lemma:m63' | ||
| 234 | +3.683435 Supp b'+1:lemma:hour' | ||
| 235 | +3.597164 O b'postag:VBN' | ||
| 236 | +3.578566 Gversion b'lemma:chip-seq' | ||
| 237 | +3.568740 O b'lemma:s' | ||
| 238 | +3.558200 Temp b'-1:lemma:sample' | ||
| 239 | +3.545060 O b'+1:lemma:o.d.' | ||
| 240 | +3.516070 Supp b'-1:lemma:+' | ||
| 241 | +3.483554 Gtype b'lemma:\xce\xb4ompr' | ||
| 242 | +3.483503 Gtype b'+1:lemma:with' | ||
| 243 | +3.459746 Supp b'lemma:nacl' | ||
| 244 | +3.441734 O b'-1:lemma:lb' | ||
| 245 | +3.409536 Air b'lemma:Anaerobic' | ||
| 246 | +3.404389 Gtype b'+1:lemma:ph5' | ||
| 247 | +3.361396 Technique b'+1:lemma:chip-exo' | ||
| 248 | +3.328422 Gtype b'lemma:\xce\xb4soxs' | ||
| 249 | +3.317686 Med b'+1:lemma:2.0' | ||
| 250 | +3.301476 Gversion b'lemma:u00096' | ||
| 251 | +3.301476 Gversion b'+1:lemma:.2' | ||
| 252 | +3.286668 O b'lemma:affyexp' | ||
| 253 | +3.280195 Air b'lemma:anaerobically' | ||
| 254 | +3.258177 Gtype b'-1:lemma:ptac' | ||
| 255 | +3.257208 O b'lemma:ompr' | ||
| 256 | +3.255510 Gtype b'+1:lemma:pq' | ||
| 257 | +3.246680 Anti b'+1:lemma:antibody' | ||
| 258 | +3.236124 O b'lemma:oxyr' | ||
| 259 | +3.209122 Supp b'+1:lemma:2' | ||
| 260 | +3.197656 Med b'+1:lemma:minimal' | ||
| 261 | +3.196597 Phase b'-1:lemma:until' | ||
| 262 | +3.189945 Gtype b'lemma:wild-type' | ||
| 263 | +3.181288 O b'-1:lemma:0.3' | ||
| 264 | +3.170002 Temp b'lemma:\xc2\xb0c' | ||
| 265 | +3.161695 O b'+1:lemma:pq' | ||
| 266 | +3.159682 Supp b'lemma:Leu' | ||
| 267 | +3.133292 Gversion b'lemma:.2' | ||
| 268 | +3.133292 Gversion b'-1:lemma:u00096' | ||
| 269 | +3.126040 O b'lemma:2-3' | ||
| 270 | +3.125880 Technique b'-1:lemma:IP' | ||
| 271 | +3.112267 O b'-1:lemma:stpa' | ||
| 272 | +3.103375 Gtype b'lemma:ptac' | ||
| 273 | +3.101224 Gtype b'+1:lemma:flagtag' | ||
| 274 | +3.060100 Temp b'-1:lemma:37' | ||
| 275 | +3.057323 Supp b'+1:lemma:_' | ||
| 276 | +3.050729 O b'lemma:Lrp' | ||
| 277 | +3.035951 Gtype b'lemma:pk4854' | ||
| 278 | +3.030223 O b'lemma:chip-arca' | ||
| 279 | +3.008946 OD b'-1:lemma:~' | ||
| 280 | +2.947889 O b'lemma:argr' | ||
| 281 | +2.944505 Technique b'-1:lemma:chip-exo' | ||
| 282 | +2.933771 O b'+1:lemma:chip-seq' | ||
| 283 | +2.918186 Gtype b'-1:lemma:rpob' | ||
| 284 | +2.896628 Phase b'+1:lemma:for' | ||
| 285 | +2.896158 O b'lemma:purr' | ||
| 286 | +2.893920 Gtype b'lemma:WT' | ||
| 287 | +2.885542 Med b'-1:lemma:ml' | ||
| 288 | +2.868396 O b'-1:lemma:l1' | ||
| 289 | +2.864588 O b'lemma:at' | ||
| 290 | +2.861849 Gtype b'lemma:deltaseqa' | ||
| 291 | +2.861849 Gtype b'-1:lemma:old' | ||
| 292 | +2.861515 Air b'postag:RB' | ||
| 293 | +2.860863 Technique b'-1:lemma:input' | ||
| 294 | +2.852420 Air b'lemma:anerobically' | ||
| 295 | +2.847369 O b'-1:lemma:\xc2\xb0c' | ||
| 296 | +2.838846 Substrain b'+1:lemma:phtpg' | ||
| 297 | +2.838740 Temp b'-1:lemma:43' | ||
| 298 | +2.808074 OD b'lemma:phase' | ||
| 299 | +2.787238 Med b'lemma:L' | ||
| 300 | +2.787238 Med b'+1:lemma:broth' | ||
| 301 | +2.770533 Gtype b'+1:lemma:aerobic' | ||
| 302 | +2.754834 O b'-1:lemma:dpd' | ||
| 303 | +2.711280 Gtype b'lemma:\xce\xb4soxr' | ||
| 304 | +2.708114 Med b'lemma:glucose' | ||
| 305 | +2.683398 O b'-1:lemma:media' | ||
| 306 | +2.661239 O b'+1:postag:NNP' | ||
| 307 | +2.646068 Gtype b'lemma:\xce\xb4oxyr' | ||
| 308 | +2.622418 O b'lemma:soxs' | ||
| 309 | +2.622418 O b'lemma:soxr' | ||
| 310 | +2.602038 Supp b'+1:lemma:Deficient' | ||
| 311 | +2.600846 Temp b'lemma:43' | ||
| 312 | +2.597103 O b'postag:DT' | ||
| 313 | +2.594739 Supp b'lemma:iptg' | ||
| 314 | +2.565098 OD b'lemma:0.3' | ||
| 315 | +2.562324 Supp b'lemma:Adenine' | ||
| 316 | +2.524716 pH b'lemma:.5' | ||
| 317 | +2.524716 pH b'-1:lemma:ph5' | ||
| 318 | +2.490454 Air b'+1:lemma:at' | ||
| 319 | +2.468286 O b'lemma:Fur' | ||
| 320 | +2.464129 Supp b'lemma:methanol' | ||
| 321 | +2.445015 Air b'-1:lemma:-' | ||
| 322 | +2.439688 Med b'+1:lemma:contain' | ||
| 323 | +2.436952 Med b'-1:lemma:LB' | ||
| 324 | +2.431687 Supp b'-1:lemma:\xc2\xb5m' | ||
| 325 | +2.424727 O b'lemma:culture' | ||
| 326 | +2.410632 O b'lemma:chip-fnr' | ||
| 327 | +2.399552 O b'+1:lemma:mid-log' | ||
| 328 | +2.380228 O b'lemma:condition' | ||
| 329 | +2.369416 Supp b'lemma:20' | ||
| 330 | +2.332730 Technique b'+1:lemma:rna-seq' | ||
| 331 | +2.331984 Gtype b'lemma:dfnr' | ||
| 332 | +2.298119 O b'-1:lemma:min' | ||
| 333 | +2.251434 Gtype b'lemma:soxs-8myc' | ||
| 334 | +2.251434 Gtype b'lemma:soxr-8myc' | ||
| 335 | +2.236660 O b'+1:lemma:sparging' | ||
| 336 | +2.235760 Gtype b'-1:lemma:_' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +0.000004 Gtype b'+1:lemma:carrying' | ||
| 341 | +-0.000024 Gtype b'+1:lemma:-' | ||
| 342 | +-0.000044 Med b'+1:lemma:media' | ||
| 343 | +-0.000057 O b'-1:lemma:g/l' | ||
| 344 | +-0.000062 Gtype b'+1:postag:IN' | ||
| 345 | +-0.000133 Gtype b'+1:lemma:cra' | ||
| 346 | +-0.000220 OD b'+1:postag:NNS' | ||
| 347 | +-0.000334 O b'lemma:pahse' | ||
| 348 | +-0.000367 O b'+1:lemma:pahse' | ||
| 349 | +-0.000370 O b'+1:lemma:antibody' | ||
| 350 | +-0.000463 Gtype b'+1:lemma:2' | ||
| 351 | +-0.000888 O b'+1:lemma:95' | ||
| 352 | +-0.001725 O b'+1:lemma:grow' | ||
| 353 | +-0.001924 O b'-1:lemma:70' | ||
| 354 | +-0.002590 O b'-1:lemma:at' | ||
| 355 | +-0.002609 Supp b'+1:lemma:glucose' | ||
| 356 | +-0.002737 Temp b'-1:lemma:\xc2\xb0c' | ||
| 357 | +-0.003250 O b'+1:lemma:0.4' | ||
| 358 | +-0.003835 O b'-1:lemma:the' | ||
| 359 | +-0.004365 Supp b'lemma:min' | ||
| 360 | +-0.004404 Air b'+1:postag:NN' | ||
| 361 | +-0.004876 Gtype b'-1:postag:SYM' | ||
| 362 | +-0.007478 Air b'-1:lemma:anaerobically' | ||
| 363 | +-0.008825 O b'lemma:25' | ||
| 364 | +-0.010133 O b'-1:lemma:\xe2\x88\x86' | ||
| 365 | +-0.010800 O b'+1:lemma:~' | ||
| 366 | +-0.011018 O b'-1:lemma:25' | ||
| 367 | +-0.012738 OD b'+1:lemma:0.4' | ||
| 368 | +-0.013297 O b'-1:lemma:mm' | ||
| 369 | +-0.013330 O b'+1:lemma:25' | ||
| 370 | +-0.017236 O b'lemma:medium' | ||
| 371 | +-0.017258 O b'+1:lemma:co2' | ||
| 372 | +-0.021642 O b'-1:lemma:minimal' | ||
| 373 | +-0.022529 O b'lemma:\xe2\x88\x86' | ||
| 374 | +-0.023207 OD b'+1:postag:CD' | ||
| 375 | +-0.024275 O b'+1:lemma:culture' | ||
| 376 | +-0.027000 Med b'+1:postag:NNS' | ||
| 377 | +-0.028443 O b'-1:postag:IN' | ||
| 378 | +-0.028871 OD b'lemma:~' | ||
| 379 | +-0.029400 O b'-1:lemma:-lrb-' | ||
| 380 | +-0.029957 O b'-1:postag:VBN' | ||
| 381 | +-0.031814 OD b'+1:lemma:-lrb-' | ||
| 382 | +-0.036730 O b'lemma:\xc2\xb0c' | ||
| 383 | +-0.040489 O b'+1:lemma:shake' | ||
| 384 | +-0.049352 O b'lemma:grow' | ||
| 385 | +-0.049870 Gtype b'-1:postag:CD' | ||
| 386 | +-0.051592 O b'+1:lemma:\xc2\xb0c' | ||
| 387 | +-0.058064 O b'+1:lemma:5' | ||
| 388 | +-0.060533 Supp b'-1:postag:NNP' | ||
| 389 | +-0.066506 O b'lemma:m63' | ||
| 390 | +-0.067322 O b'lemma:purify' | ||
| 391 | +-0.073479 O b'-1:lemma:1' | ||
| 392 | +-0.078629 OD b'+1:postag:-LRB-' | ||
| 393 | +-0.088409 OD b'-1:postag:DT' | ||
| 394 | +-0.089657 O b'+1:lemma:300' | ||
| 395 | +-0.090027 O b'lemma:lb' | ||
| 396 | +-0.092005 Air b'-1:postag:CC' | ||
| 397 | +-0.094016 O b'-1:lemma:e.' | ||
| 398 | +-0.094979 O b'-1:postag:-LRB-' | ||
| 399 | +-0.095499 O b'+1:lemma:-rrb-' | ||
| 400 | +-0.096558 Gversion b'-1:postag:NN' | ||
| 401 | +-0.102714 O b'-1:lemma:fresh' | ||
| 402 | +-0.102983 Phase b'+1:postag:NN' | ||
| 403 | +-0.104669 Supp b'lemma:and' | ||
| 404 | +-0.106096 Phase b'-1:lemma:at' | ||
| 405 | +-0.110455 O b'+1:lemma:minimal' | ||
| 406 | +-0.110526 Supp b'+1:postag:IN' | ||
| 407 | +-0.113970 Technique b'-1:lemma::' | ||
| 408 | +-0.119878 O b'-1:lemma:iptg' | ||
| 409 | +-0.125836 O b'+1:lemma:mm' | ||
| 410 | +-0.127210 O b'+1:lemma:rep1' | ||
| 411 | +-0.132494 Gtype b'-1:postag:NN' | ||
| 412 | +-0.133598 Vess b'postag:NN' | ||
| 413 | +-0.137884 O b'lemma:o2' | ||
| 414 | +-0.140906 O b'+1:lemma:o2' | ||
| 415 | +-0.143319 O b'-1:lemma:n2' | ||
| 416 | +-0.147451 O b'-1:lemma:o2' | ||
| 417 | +-0.153465 Anti b'+1:postag:JJ' | ||
| 418 | +-0.160555 O b'lemma:mg1655' | ||
| 419 | +-0.160730 O b'-1:lemma:um' | ||
| 420 | +-0.160730 O b'+1:lemma:paraquat' | ||
| 421 | +-0.168104 O b'lemma:minimal' | ||
| 422 | +-0.171270 O b'-1:lemma:of' | ||
| 423 | +-0.172228 O b'-1:lemma:from' | ||
| 424 | +-0.175329 O b'lemma:e.' | ||
| 425 | +-0.178475 O b'-1:lemma:30' | ||
| 426 | +-0.179463 O b'-1:lemma:0.1' | ||
| 427 | +-0.182901 OD b'postag:JJ' | ||
| 428 | +-0.185549 Med b'postag:CD' | ||
| 429 | +-0.192111 Air b'postag:CD' | ||
| 430 | +-0.211750 Supp b'-1:postag:NN' | ||
| 431 | +-0.223595 O b'lemma:co2' | ||
| 432 | +-0.226618 Gtype b'postag:CD' | ||
| 433 | +-0.231536 Med b'-1:postag:NN' | ||
| 434 | +-0.234723 O b'lemma:30' | ||
| 435 | +-0.248832 O b'lemma:aerobically' | ||
| 436 | +-0.249281 Agit b'postag:NN' | ||
| 437 | +-0.250953 O b'lemma:n2' | ||
| 438 | +-0.270863 O b'+1:lemma:phase' | ||
| 439 | +-0.306219 Strain b'+1:postag:NN' | ||
| 440 | +-0.308359 O b'-1:lemma:od600' | ||
| 441 | +-0.323236 O b'+1:postag:IN' | ||
| 442 | +-0.329990 O b'lemma:anaerobic' | ||
| 443 | +-0.339291 O b'lemma:od600' | ||
| 444 | +-0.345297 O b'+1:lemma:.' | ||
| 445 | +-0.345297 O b'+1:postag:.' | ||
| 446 | +-0.345455 Med b'+1:postag:IN' | ||
| 447 | +-0.346323 O b'-1:lemma:rifampicin' | ||
| 448 | +-0.350930 Air b'-1:lemma:or' | ||
| 449 | +-0.351942 O b'-1:lemma:cra' | ||
| 450 | +-0.357748 Gtype b'lemma:delta' | ||
| 451 | +-0.359268 O b'lemma:phase' | ||
| 452 | +-0.360855 O b'-1:lemma:~' | ||
| 453 | +-0.363783 O b'postag:RB' | ||
| 454 | +-0.363829 OD b'+1:lemma:and' | ||
| 455 | +-0.388025 Supp b'+1:postag:VBN' | ||
| 456 | +-0.399712 O b'+1:lemma:until' | ||
| 457 | +-0.413829 O b'+1:postag:NNS' | ||
| 458 | +-0.416759 OD b'+1:postag:CC' | ||
| 459 | +-0.419943 O b'-1:lemma:ml' | ||
| 460 | +-0.423733 O b'+1:postag:-RRB-' | ||
| 461 | +-0.431094 O b'-1:lemma:grow' | ||
| 462 | +-0.438662 O b'lemma:150' | ||
| 463 | +-0.438662 O b'+1:lemma:mg/ml' | ||
| 464 | +-0.438787 O b'+1:lemma:0.3' | ||
| 465 | +-0.450796 Temp b'postag:JJ' | ||
| 466 | +-0.452037 O b'lemma:\xce\xb4fur' | ||
| 467 | +-0.453882 Air b'-1:postag:JJ' | ||
| 468 | +-0.460132 O b'+1:lemma:arginine' | ||
| 469 | +-0.520629 O b'postag:VBP' | ||
| 470 | +-0.525807 O b'-1:lemma:0.2' | ||
| 471 | +-0.531833 O b'lemma:dissolve' | ||
| 472 | +-0.544854 Phase b'-1:postag:NN' | ||
| 473 | +-0.548102 Anti b'+1:lemma:anti-fur' | ||
| 474 | +-0.553501 O b'lemma:0.3' | ||
| 475 | +-0.554123 Technique b'-1:postag::' | ||
| 476 | +-0.564730 O b'+1:lemma:%' | ||
| 477 | +-0.566274 O b'-1:lemma:mid-log' | ||
| 478 | +-0.595934 O b'+1:lemma:cell' | ||
| 479 | +-0.624651 O b'+1:lemma:c' | ||
| 480 | +-0.627312 Temp b'+1:lemma:to' | ||
| 481 | +-0.627312 Temp b'+1:postag:TO' | ||
| 482 | +-0.629337 Med b'+1:postag:NN' | ||
| 483 | +-0.634742 O b'+1:lemma:_' | ||
| 484 | +-0.635820 O b'lemma:dpd' | ||
| 485 | +-0.688829 OD b'lemma:-lrb-' | ||
| 486 | +-0.690594 OD b'+1:postag:NN' | ||
| 487 | +-0.702445 O b'lemma:20' | ||
| 488 | +-0.763984 OD b'postag:-LRB-' | ||
| 489 | +-0.768100 O b'lemma:media' | ||
| 490 | +-0.778612 Gversion b'+1:postag:NN' | ||
| 491 | +-0.780471 O b'lemma:anaerobically' | ||
| 492 | +-0.786127 O b'-1:postag:VBG' | ||
| 493 | +-0.824784 Med b'-1:postag:IN' | ||
| 494 | +-0.845775 Supp b'+1:lemma:acetate' | ||
| 495 | +-0.846041 O b'-1:lemma:co2' | ||
| 496 | +-0.852351 pH b'postag:NN' | ||
| 497 | +-0.867978 O b'+1:lemma:fecl2' | ||
| 498 | +-0.888618 Supp b'+1:lemma:rifampicin' | ||
| 499 | +-0.923659 Supp b'postag:CC' | ||
| 500 | +-0.924869 O b'lemma:of' | ||
| 501 | +-0.956241 Temp b'postag:NN' | ||
| 502 | +-0.991767 O b'-1:lemma:sample' | ||
| 503 | +-1.051712 O b'-1:lemma:dissolve' | ||
| 504 | +-1.051712 O b'+1:lemma:methanol' | ||
| 505 | +-1.119586 O b'+1:lemma:+' | ||
| 506 | +-1.132902 O b'-1:lemma:37' | ||
| 507 | +-1.140977 Phase b'-1:postag:JJ' | ||
| 508 | +-1.157470 O b'lemma:fecl2' | ||
| 509 | +-1.187930 O b'lemma:0.2' | ||
| 510 | +-1.196177 O b'+1:lemma:supplement' | ||
| 511 | +-1.198543 O b'lemma:2h' | ||
| 512 | +-1.198543 O b'-1:lemma:additional' | ||
| 513 | +-1.211522 O b'+1:lemma:g/l' | ||
| 514 | +-1.224455 O b'+1:lemma:at' | ||
| 515 | +-1.233557 O b'-1:lemma:rpob' | ||
| 516 | +-1.246376 O b'lemma:0.1' | ||
| 517 | +-1.265258 O b'-1:postag::' | ||
| 518 | +-1.266857 O b'lemma:37' | ||
| 519 | +-1.276968 Air b'+1:postag:JJ' | ||
| 520 | +-1.367143 O b'+1:postag:VBG' | ||
| 521 | +-1.372161 O b'lemma:rifampicin' | ||
| 522 | +-1.380156 O b'lemma:mid-log' | ||
| 523 | +-1.408891 O b'+1:lemma:hour' | ||
| 524 | +-1.503066 O b'lemma:wt' | ||
| 525 | +-1.654992 Anti b'postag:NNP' | ||
| 526 | +-1.656418 Supp b'-1:lemma:%' | ||
| 527 | +-1.743144 Phase b'postag:JJ' | ||
| 528 | +-1.805708 O b'-1:lemma:ompr' | ||
| 529 | +-1.821985 O b'+1:lemma:in' | ||
| 530 | +-1.835729 O b'-1:lemma:nsrr' | ||
| 531 | +-1.914064 O b'lemma:methanol' | ||
| 532 | +-1.942273 O b'-1:lemma:IP' | ||
| 533 | +-2.145235 Air b'postag:NN' | ||
| 534 | +-2.312190 O b'-1:lemma:2' | ||
| 535 | +-2.393207 Supp b'postag:JJ' | ||
| 536 | +-2.809437 O b'+1:lemma:2' | ||
| 537 | +-3.166822 O b'+1:lemma:1' | ||
| 538 | +-3.568530 O b'-1:lemma:_' | ||
| 539 | +-3.975976 O b'-1:lemma::' | ||
| 540 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.01750591736573677, 'c2': 0.02307723566043045} | 4 | +best params:{'c1': 0.3584617458365783, 'c2': 0.005702731733010388} |
| 5 | -best CV score:0.7965019925648547 | 5 | +best CV score:0.7892724734479645 |
| 6 | -model size: 0.10M | 6 | +model size: 0.05M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.7968324300802168 | 8 | +Flat F1: 0.7770000497122165 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 1.000 0.405 0.577 37 | 11 | OD 1.000 0.405 0.577 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.897 0.912 0.904 57 | 14 | + Med 0.800 0.842 0.821 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | - Phase 1.000 0.947 0.973 19 | 18 | + Phase 1.000 0.895 0.944 19 |
| 19 | - Air 0.754 0.742 0.748 62 | 19 | + Air 0.780 0.742 0.760 62 |
| 20 | - Anti 1.000 0.667 0.800 9 | 20 | + Anti 0.500 0.444 0.471 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.862 0.764 0.810 106 | 22 | + Gtype 0.828 0.774 0.800 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.865 0.662 0.750 136 | 24 | + Supp 0.803 0.691 0.743 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.876 0.748 0.797 480 | 27 | +avg / total 0.834 0.744 0.777 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -OD -> OD 5.786764 | 31 | +OD -> OD 6.207517 |
| 32 | -Agit -> Agit 5.337876 | 32 | +Agit -> Agit 6.144930 |
| 33 | -Anti -> Anti 5.174874 | 33 | +Med -> Med 5.284052 |
| 34 | -Temp -> Temp 5.088685 | 34 | +Anti -> Anti 5.278606 |
| 35 | -Med -> Med 5.002944 | 35 | +Temp -> Temp 5.208476 |
| 36 | -Air -> Air 4.877267 | 36 | +Air -> Air 4.805077 |
| 37 | -O -> O 4.715817 | 37 | +O -> O 4.440768 |
| 38 | -Gversion -> Gversion 4.473906 | 38 | +Gtype -> Gtype 4.358978 |
| 39 | -Phase -> Phase 4.357763 | 39 | +Gversion -> Gversion 4.158001 |
| 40 | -Gtype -> Gtype 4.242273 | 40 | +Phase -> Phase 4.098995 |
| 41 | -Supp -> Supp 4.009897 | 41 | +Technique -> Technique 4.090708 |
| 42 | -Technique -> Technique 3.021233 | 42 | +Supp -> Supp 4.012852 |
| 43 | -pH -> pH 2.548336 | 43 | +O -> Supp 2.068480 |
| 44 | -Substrain -> Gtype 1.971828 | 44 | +Gtype -> Supp 1.861974 |
| 45 | -O -> Supp 1.641966 | 45 | +pH -> pH 1.651755 |
| 46 | -Gtype -> Supp 1.637091 | 46 | +O -> Technique 1.423652 |
| 47 | -Air -> O 1.145928 | 47 | +Air -> O 1.413050 |
| 48 | -O -> Gtype 1.141727 | 48 | +O -> Gtype 1.235571 |
| 49 | -Technique -> Air 1.068808 | 49 | +O -> Anti 1.042265 |
| 50 | -Gtype -> pH 0.990954 | 50 | +Substrain -> Gtype 0.832252 |
| 51 | -O -> Technique 0.980217 | 51 | +Med -> O 0.806110 |
| 52 | -O -> Temp 0.771371 | 52 | +O -> Temp 0.755910 |
| 53 | -O -> Anti 0.605031 | 53 | +Temp -> O 0.540542 |
| 54 | -Gtype -> Air 0.434959 | 54 | +Technique -> Air 0.454746 |
| 55 | -Med -> O 0.223888 | 55 | +O -> Gversion 0.402020 |
| 56 | -O -> Strain 0.200811 | 56 | +Supp -> O 0.347334 |
| 57 | -O -> pH 0.175383 | 57 | +O -> Med 0.334881 |
| 58 | -O -> Gversion 0.140227 | 58 | +OD -> Phase 0.330860 |
| 59 | -OD -> Phase 0.052262 | 59 | +Phase -> O 0.243437 |
| 60 | -O -> Vess 0.045108 | 60 | +Gtype -> pH 0.053400 |
| 61 | -Temp -> O 0.034423 | 61 | +O -> OD 0.004380 |
| 62 | -Phase -> O 0.018387 | 62 | +O -> Phase 0.002932 |
| 63 | -Strain -> O -0.000112 | 63 | +Technique -> O -0.000992 |
| 64 | -Anti -> pH -0.000851 | 64 | +Gtype -> Med -0.027797 |
| 65 | -Strain -> OD -0.002202 | 65 | +Supp -> Air -0.028399 |
| 66 | -O -> Substrain -0.003970 | 66 | +Gtype -> O -0.156530 |
| 67 | -Technique -> Phase -0.027678 | 67 | +OD -> O -0.230762 |
| 68 | -Med -> pH -0.028490 | 68 | +O -> Air -0.339608 |
| 69 | -Anti -> Phase -0.030227 | 69 | +Gtype -> OD -0.384678 |
| 70 | -Gtype -> Strain -0.031833 | 70 | +Agit -> O -0.523470 |
| 71 | -pH -> OD -0.041636 | 71 | +Supp -> Med -0.770936 |
| 72 | -Air -> Anti -0.042531 | 72 | +Med -> Supp -0.862383 |
| 73 | -OD -> pH -0.045135 | 73 | +Phase -> OD -0.954560 |
| 74 | -pH -> Air -0.051415 | 74 | +Substrain -> O -1.080979 |
| 75 | -Anti -> O -0.054882 | ||
| 76 | -Med -> OD -0.055592 | ||
| 77 | -O -> Med -0.064478 | ||
| 78 | -Med -> Temp -0.070415 | ||
| 79 | -Phase -> Air -0.071257 | ||
| 80 | -Supp -> Agit -0.072692 | ||
| 81 | 75 | ||
| 82 | 76 | ||
| 83 | Top unlikely transitions: | 77 | Top unlikely transitions: |
| 84 | -O -> Agit -0.317813 | 78 | +OD -> OD 6.207517 |
| 85 | -Gversion -> Gtype -0.346160 | 79 | +Agit -> Agit 6.144930 |
| 86 | -Anti -> Gtype -0.379001 | 80 | +Med -> Med 5.284052 |
| 87 | -Gversion -> Supp -0.395995 | 81 | +Anti -> Anti 5.278606 |
| 88 | -Technique -> O -0.407315 | 82 | +Temp -> Temp 5.208476 |
| 89 | -Technique -> Gversion -0.411287 | 83 | +Air -> Air 4.805077 |
| 90 | -Air -> Gtype -0.414228 | 84 | +O -> O 4.440768 |
| 91 | -Gversion -> Technique -0.423101 | 85 | +Gtype -> Gtype 4.358978 |
| 92 | -Supp -> pH -0.449062 | 86 | +Gversion -> Gversion 4.158001 |
| 93 | -Air -> Temp -0.454318 | 87 | +Phase -> Phase 4.098995 |
| 94 | -OD -> Temp -0.462022 | 88 | +Technique -> Technique 4.090708 |
| 95 | -OD -> Technique -0.528407 | 89 | +Supp -> Supp 4.012852 |
| 96 | -Gtype -> Phase -0.537062 | 90 | +O -> Supp 2.068480 |
| 97 | -OD -> Anti -0.541206 | 91 | +Gtype -> Supp 1.861974 |
| 98 | -Gversion -> Air -0.555674 | 92 | +pH -> pH 1.651755 |
| 99 | -Supp -> Temp -0.581411 | 93 | +O -> Technique 1.423652 |
| 100 | -Supp -> Phase -0.581776 | 94 | +Air -> O 1.413050 |
| 101 | -Technique -> Supp -0.590399 | 95 | +O -> Gtype 1.235571 |
| 102 | -Gtype -> Technique -0.620634 | 96 | +O -> Anti 1.042265 |
| 103 | -OD -> Supp -0.644073 | 97 | +Substrain -> Gtype 0.832252 |
| 104 | -Med -> Air -0.679744 | 98 | +Med -> O 0.806110 |
| 105 | -Temp -> Med -0.687449 | 99 | +O -> Temp 0.755910 |
| 106 | -OD -> Med -0.717084 | 100 | +Temp -> O 0.540542 |
| 107 | -Anti -> OD -0.770834 | 101 | +Technique -> Air 0.454746 |
| 108 | -Supp -> Anti -0.804922 | 102 | +O -> Gversion 0.402020 |
| 109 | -Air -> Supp -0.806945 | 103 | +Supp -> O 0.347334 |
| 110 | -Gtype -> Gversion -0.811241 | 104 | +O -> Med 0.334881 |
| 111 | -Supp -> OD -0.862585 | 105 | +OD -> Phase 0.330860 |
| 112 | -Supp -> Gversion -0.867304 | 106 | +Phase -> O 0.243437 |
| 113 | -Phase -> Technique -0.873833 | 107 | +Gtype -> pH 0.053400 |
| 114 | -Agit -> O -0.910378 | 108 | +O -> OD 0.004380 |
| 115 | -Air -> Med -0.936107 | 109 | +O -> Phase 0.002932 |
| 116 | -Gtype -> Med -0.971156 | 110 | +Technique -> O -0.000992 |
| 117 | -Supp -> Technique -0.979631 | 111 | +Gtype -> Med -0.027797 |
| 118 | -Supp -> Gtype -0.998503 | 112 | +Supp -> Air -0.028399 |
| 119 | -OD -> Gtype -1.001151 | 113 | +Gtype -> O -0.156530 |
| 120 | -Supp -> Air -1.002273 | 114 | +OD -> O -0.230762 |
| 121 | -Gtype -> Anti -1.098941 | 115 | +O -> Air -0.339608 |
| 122 | -OD -> Air -1.189877 | 116 | +Gtype -> OD -0.384678 |
| 123 | -O -> Air -1.194520 | 117 | +Agit -> O -0.523470 |
| 124 | -OD -> O -1.238899 | 118 | +Supp -> Med -0.770936 |
| 125 | -Air -> OD -1.240827 | 119 | +Med -> Supp -0.862383 |
| 126 | -Gtype -> OD -1.288759 | 120 | +Phase -> OD -0.954560 |
| 127 | -Substrain -> O -1.351729 | 121 | +Substrain -> O -1.080979 |
| 128 | -Technique -> pH -1.436208 | ||
| 129 | -Technique -> Gtype -1.565301 | ||
| 130 | -Supp -> Med -1.571460 | ||
| 131 | -Technique -> OD -1.655463 | ||
| 132 | -Med -> Supp -1.791934 | ||
| 133 | -Phase -> OD -2.395487 | ||
| 134 | 122 | ||
| 135 | 123 | ||
| 136 | Top positive: | 124 | Top positive: |
| 137 | -7.777505 O b'lemma:_' | 125 | +8.207743 Supp b'lemma:Iron' |
| 138 | -6.605877 O b'lemma:1' | 126 | +8.126913 O b'lemma:_' |
| 139 | -5.933184 Phase b'lemma:stationary' | 127 | +7.668488 Air b'lemma:anaerobic' |
| 140 | -5.921751 Air b'lemma:anaerobic' | 128 | +7.430711 Air b'lemma:aerobic' |
| 141 | -5.663542 Supp b'lemma:Iron' | 129 | +7.087261 O b'lemma:1' |
| 142 | -5.628841 O b'lemma:2' | 130 | +6.741673 Technique b'lemma:ChIP-exo' |
| 143 | -5.570604 Strain b'lemma:k-12' | 131 | +6.330636 Supp b'lemma:nitrate' |
| 144 | -5.357728 Air b'lemma:aerobic' | 132 | +6.316340 Strain b'lemma:k-12' |
| 145 | -5.308359 Technique b'lemma:chipseq' | 133 | +6.184951 Air b'-1:lemma:ChIP-Seq' |
| 146 | -5.243195 Technique b'lemma:ChIP-exo' | 134 | +6.044256 Substrain b'lemma:mg1655' |
| 147 | -5.146328 O b'lemma:3' | 135 | +6.022814 O b'lemma:2' |
| 148 | -5.113544 O b'lemma:rpob' | 136 | +5.884584 O b'lemma:rpob' |
| 149 | -4.972436 Supp b'lemma:pq' | 137 | +5.829789 Phase b'lemma:stationary' |
| 150 | -4.736752 O b'-1:lemma:tag' | 138 | +5.778215 O b'lemma:3' |
| 151 | -4.683084 Gtype b'lemma:\xce\xb4cra' | 139 | +5.775900 Med b'lemma:MOPS' |
| 152 | -4.682011 Phase b'lemma:mid-log' | 140 | +5.472627 Technique b'lemma:chipseq' |
| 153 | -4.676054 Gversion b'lemma:asm584v2' | 141 | +5.452821 Gtype b'lemma:type' |
| 154 | -4.661754 Supp b'lemma:nh4cl' | 142 | +5.385754 Gversion b'lemma:nc' |
| 155 | -4.645082 Gtype b'lemma:flag-tag' | 143 | +5.283474 Technique b'lemma:ChIP-Seq' |
| 156 | -4.645082 Gtype b'-1:lemma:c-terminal' | 144 | +5.207906 Gversion b'lemma:asm584v2' |
| 157 | -4.640572 O b'lemma:rep1' | 145 | +5.127213 Phase b'lemma:mid-log' |
| 158 | -4.613649 O b'lemma:Cra' | 146 | +5.064325 O b'postag:IN' |
| 159 | -4.546591 Gtype b'lemma:arca8myc' | 147 | +5.025536 O b'-1:lemma:ChIP-exo' |
| 160 | -4.537870 O b'postag:IN' | 148 | +5.020720 O b'lemma:Custom' |
| 161 | -4.531129 Supp b'lemma:glucose' | 149 | +4.808679 Supp b'lemma:pq' |
| 162 | -4.528260 Air b'-1:lemma:ChIP-Seq' | 150 | +4.770459 O b'lemma:\xcf\x8332' |
| 163 | -4.460701 O b'lemma:rep2' | 151 | +4.677547 O b'lemma:b' |
| 164 | -4.331423 Med b'lemma:MOPS' | 152 | +4.677327 Air b'lemma:Aerobic' |
| 165 | -4.320826 Gtype b'lemma:wt' | 153 | +4.623206 Gtype b'lemma:\xce\xb4cra' |
| 166 | -4.314650 Supp b'lemma:nitrate' | 154 | +4.570334 OD b'lemma:od600' |
| 167 | -4.296372 O b'lemma:rep3' | 155 | +4.480021 O b'lemma:rep1' |
| 168 | -4.285293 Substrain b'lemma:mg1655' | 156 | +4.422817 Supp b'lemma:nh4cl' |
| 169 | -4.240354 Supp b'lemma:acetate' | 157 | +4.411192 Supp b'+1:lemma:\xc2\xb5m' |
| 170 | -4.111263 Med b'lemma:lb' | 158 | +4.371069 Med b'lemma:LB' |
| 171 | -4.087796 Gtype b'lemma:delta-arca' | 159 | +4.342307 O b'lemma:a' |
| 172 | -4.036491 O b'+1:postag:RB' | 160 | +4.339830 Gtype b'lemma:flag-tag' |
| 173 | -4.022073 Supp b'+1:lemma:\xc2\xb5m' | 161 | +4.339830 Gtype b'-1:lemma:c-terminal' |
| 174 | -4.010145 O b'lemma:b' | 162 | +4.307469 O b'-1:lemma:tag' |
| 175 | -4.010092 Supp b'lemma:no3' | 163 | +4.290727 Gtype b'+1:lemma:type' |
| 176 | -3.996538 Med b'lemma:LB' | 164 | +4.284775 Med b'lemma:lb' |
| 177 | -3.996393 Gtype b'-1:lemma:\xe2\x88\x86' | 165 | +4.262695 Gtype b'-1:lemma:\xe2\x88\x86' |
| 178 | -3.982442 Technique b'lemma:rna-seq' | 166 | +4.262594 Temp b'-1:lemma:sample' |
| 179 | -3.957894 Air b'lemma:Aerobic' | 167 | +4.220453 O b'lemma:rep2' |
| 180 | -3.935017 O b'lemma:a' | 168 | +4.087831 O b'postag::' |
| 181 | -3.803123 OD b'lemma:od600' | 169 | +4.058385 Gversion b'-1:lemma:nc' |
| 182 | -3.801977 Anti b'lemma:none' | 170 | +4.009221 O b'lemma:rep3' |
| 183 | -3.786775 Gtype b'lemma:fnr8myc' | 171 | +3.965243 Gtype b'lemma:arca8myc' |
| 184 | -3.769938 O b'lemma:.' | 172 | +3.958883 Supp b'lemma:glucose' |
| 185 | -3.769938 O b'postag:.' | 173 | +3.925260 Technique b'lemma:rna-seq' |
| 186 | -3.769927 Supp b'lemma:Fe' | 174 | +3.899283 O b'lemma:Cra' |
| 187 | -3.764066 Technique b'lemma:chip-seq' | 175 | +3.849955 OD b'lemma:od450' |
| 188 | -3.735366 O b'postag::' | 176 | +3.714897 Gtype b'lemma:delta-arca' |
| 189 | -3.685306 O b'lemma:CEL' | 177 | +3.673709 Gtype b'lemma:wt' |
| 190 | -3.645917 O b'lemma:\xcf\x8332' | 178 | +3.659796 Technique b'lemma:chip-seq' |
| 191 | -3.642265 O b'-1:lemma:Aerobic' | 179 | +3.528015 Gtype b'lemma:fnr8myc' |
| 192 | -3.634484 Anti b'lemma:seqa' | 180 | +3.489859 O b'+1:lemma:od600' |
| 193 | -3.544891 Technique b'lemma:rnaseq' | 181 | +3.484744 Supp b'lemma:Fe' |
| 194 | -3.525311 Supp b'+1:lemma:Deficient' | 182 | +3.480788 Gtype b'lemma:nsrr' |
| 195 | -3.521610 OD b'lemma:od450' | 183 | +3.465328 O b'lemma:.' |
| 196 | -3.519361 O b'-1:lemma:ChIP-exo' | 184 | +3.465328 O b'postag:.' |
| 197 | -3.516252 O b'lemma:Custom' | 185 | +3.447372 O b'-1:lemma:type' |
| 198 | -3.464219 O b'postag:VBN' | 186 | +3.439488 Supp b'lemma:acetate' |
| 199 | -3.463491 Supp b'+1:lemma:1' | 187 | +3.385749 Anti b'+1:lemma:antibody' |
| 200 | -3.450572 Supp b'lemma:rifampicin' | 188 | +3.365979 Gtype b'lemma:\xe2\x88\x86' |
| 201 | -3.427503 Med b'+1:lemma:0.4' | 189 | +3.364067 Vess b'lemma:flask' |
| 202 | -3.379916 Gtype b'lemma:delta-fnr' | 190 | +3.364067 Vess b'-1:lemma:warm' |
| 203 | -3.378105 Supp b'-1:lemma:Cra' | 191 | +3.286848 Supp b'lemma:no3' |
| 204 | -3.351155 Gtype b'lemma:\xe2\x88\x86' | 192 | +3.283119 O b'-1:lemma:Aerobic' |
| 205 | -3.343450 Gversion b'lemma:chip-seq' | 193 | +3.269163 Supp b'lemma:arginine' |
| 206 | -3.314924 Supp b'lemma:fructose' | 194 | +3.232797 Technique b'lemma:rnaseq' |
| 207 | -3.282214 Supp b'lemma:dpd' | 195 | +3.230473 O b'postag:VBN' |
| 208 | -3.262950 Gtype b'+1:lemma:with' | 196 | +3.182859 Supp b'lemma:fructose' |
| 209 | -3.253726 O b'lemma:-' | 197 | +3.165112 Med b'+1:lemma:0.4' |
| 210 | -3.214173 O b'+1:lemma:od600' | 198 | +3.163288 O b'lemma:-' |
| 211 | -3.187644 O b'-1:lemma:0.3-0.35' | 199 | +3.124487 Supp b'lemma:dpd' |
| 212 | -3.182055 Gtype b'lemma:type' | 200 | +3.038568 Air b'postag:RB' |
| 213 | -3.172972 Supp b'lemma:arginine' | 201 | +3.018509 Gtype b'lemma:\xce\xb4fur' |
| 214 | -3.120594 Gtype b'lemma:\xce\xb4fur' | 202 | +3.008077 Supp b'lemma:rifampicin' |
| 215 | -3.117794 Gversion b'lemma:nc' | 203 | +3.002475 Gtype b'-1:lemma:rpob' |
| 216 | -3.109528 O b'-1:lemma:glucose' | 204 | +3.000763 Gtype b'lemma:delta-fnr' |
| 217 | -3.081979 O b'+1:lemma:anti-fur' | 205 | +2.976036 pH b'lemma:ph5' |
| 218 | -3.077641 Gtype b'+1:lemma:type' | 206 | +2.976036 pH b'+1:lemma:.5' |
| 219 | -3.064731 Supp b'+1:lemma:2' | 207 | +2.958886 Anti b'lemma:none' |
| 220 | -3.053268 Vess b'lemma:flask' | 208 | +2.909966 Temp b'-1:lemma:\xcf\x8332' |
| 221 | -3.053268 Vess b'-1:lemma:warm' | 209 | +2.844862 Gtype b'+1:lemma:flagtag' |
| 222 | -3.046425 O b'-1:lemma:anaerobic' | 210 | +2.832159 O b'postag:CC' |
| 223 | -3.038756 pH b'lemma:ph5' | 211 | +2.773852 Supp b'+1:lemma:1' |
| 224 | -3.038756 pH b'+1:lemma:.5' | 212 | +2.760087 O b'-1:lemma:glucose' |
| 225 | -3.027884 Med b'lemma:m63' | 213 | +2.714759 Gversion b'lemma:u00096' |
| 226 | -3.018439 Gtype b'lemma:wild-type' | 214 | +2.714759 Gversion b'+1:lemma:.2' |
| 227 | -3.002251 O b'lemma:chip-arca' | 215 | +2.713598 O b'lemma:chip' |
| 228 | -3.002149 Anti b'lemma:anti-myc' | 216 | +2.709955 Temp b'lemma:\xc2\xb0c' |
| 229 | -3.001018 Gtype b'lemma:nsrr' | 217 | +2.688829 Gversion b'lemma:000913' |
| 230 | -3.000941 O b'lemma:affyexp' | 218 | +2.679944 Anti b'lemma:seqa' |
| 231 | -3.000850 Air b'postag:RB' | 219 | +2.679837 Gtype b'+1:lemma:ph5' |
| 232 | -2.987234 O b'-1:lemma:lb' | 220 | +2.659927 O b'-1:lemma:anaerobic' |
| 233 | -2.981372 Strain b'+1:lemma:substr' | 221 | +2.645999 Gtype b'+1:lemma:with' |
| 234 | -2.977968 O b'lemma:with' | 222 | +2.632697 O b'-1:lemma:0.3-0.35' |
| 235 | -2.970913 O b'lemma:s' | 223 | +2.615260 OD b'+1:lemma:stationary' |
| 236 | -2.954955 O b'lemma:oxyr' | 224 | +2.610232 Gtype b'+1:lemma:pq' |
| 237 | -2.919696 Technique b'lemma:ChIP-Seq' | 225 | +2.600969 O b'lemma:CEL' |
| 238 | -2.911598 Gtype b'lemma:WT' | 226 | +2.583139 Supp b'+1:lemma:2' |
| 239 | -2.907151 Temp b'lemma:\xc2\xb0c' | 227 | +2.577577 Med b'+1:lemma:minimal' |
| 240 | -2.882096 Gtype b'lemma:\xce\xb4soxs' | 228 | +2.529370 Med b'lemma:m63' |
| 241 | -2.828303 O b'-1:lemma:stpa' | 229 | +2.523009 Strain b'+1:lemma:substr' |
| 242 | -2.815555 O b'lemma:argr' | 230 | +2.501031 Gtype b'-1:lemma:ptac' |
| 243 | -2.805344 Med b'+1:lemma:minimal' | 231 | +2.491778 Technique b'-1:lemma:IP' |
| 244 | -2.776817 Gversion b'lemma:.2' | 232 | +2.481774 Gversion b'lemma:chip-seq' |
| 245 | -2.776817 Gversion b'-1:lemma:u00096' | 233 | +2.430079 Gtype b'lemma:wild-type' |
| 246 | -2.765075 O b'lemma:at' | 234 | +2.409612 Supp b'-1:lemma:\xc2\xb5m' |
| 247 | -2.753642 Supp b'-1:lemma:+' | 235 | +2.407221 Temp b'-1:lemma:37' |
| 248 | -2.743827 Med b'+1:lemma:2.0' | 236 | +2.376179 Supp b'-1:lemma:+' |
| 249 | -2.731390 O b'lemma:ompr' | 237 | +2.370422 O b'postag:DT' |
| 250 | -2.715846 O b'+1:lemma:pq' | 238 | +2.364816 O b'lemma:s' |
| 251 | -2.713993 Gversion b'lemma:u00096' | 239 | +2.361663 pH b'lemma:.5' |
| 252 | -2.713993 Gversion b'+1:lemma:.2' | 240 | +2.361663 pH b'-1:lemma:ph5' |
| 253 | -2.703704 Air b'lemma:Anaerobic' | 241 | +2.337980 Gversion b'lemma:.2' |
| 254 | -2.702255 Gtype b'lemma:\xce\xb4ompr' | 242 | +2.337980 Gversion b'-1:lemma:u00096' |
| 255 | -2.686740 Supp b'+1:lemma:_' | 243 | +2.298988 Anti b'lemma:anti-rpos' |
| 256 | -2.677806 Gtype b'-1:lemma:ptac' | 244 | +2.276207 O b'+1:postag:NNP' |
| 257 | -2.662879 Phase b'+1:lemma:for' | 245 | +2.273430 Temp b'-1:lemma:43' |
| 258 | -2.660845 O b'lemma:purr' | 246 | +2.257383 Supp b'-1:lemma:Cra' |
| 259 | -2.633400 Gversion b'-1:lemma:nc' | 247 | +2.255470 O b'+1:lemma:pq' |
| 260 | -2.610705 Med b'-1:lemma:ml' | 248 | +2.250731 Anti b'lemma:anti-myc' |
| 261 | -2.610364 Supp b'lemma:nacl' | 249 | +2.208950 Technique b'-1:lemma:chip-exo' |
| 262 | -2.598932 Technique b'-1:lemma:IP' | 250 | +2.195872 O b'lemma:or' |
| 263 | -2.587524 O b'lemma:or' | 251 | +2.186698 Supp b'lemma:of' |
| 264 | -2.572768 Supp b'lemma:Leu' | 252 | +2.185972 Temp b'-1:lemma:30' |
| 265 | -2.557048 Gversion b'lemma:000913' | 253 | +2.185682 O b'+1:lemma:chip-seq' |
| 266 | -2.535138 Gtype b'+1:lemma:flagtag' | 254 | +2.166108 Technique b'+1:lemma:chip-exo' |
| 267 | -2.529124 O b'postag:CC' | 255 | +2.160343 Supp b'lemma:iptg' |
| 268 | -2.528151 Gtype b'+1:lemma:pq' | 256 | +2.149961 O b'lemma:with' |
| 269 | -2.519454 OD b'+1:lemma:stationary' | 257 | +2.149623 O b'-1:lemma:lb' |
| 270 | -2.517078 Gtype b'+1:lemma:aerobic' | 258 | +2.147543 Supp b'lemma:nacl' |
| 271 | -2.508910 O b'lemma:Lrp' | 259 | +2.136781 O b'postag:VBG' |
| 272 | -2.508428 Gtype b'-1:lemma:rpob' | 260 | +2.134337 O b'+1:postag:RB' |
| 273 | -2.502749 Temp b'lemma:43' | 261 | +2.118014 O b'-1:lemma:l1' |
| 274 | -2.501837 Air b'lemma:anaerobically' | 262 | +2.103907 Med b'+1:lemma:2.0' |
| 275 | -2.500161 Gtype b'lemma:ptac' | 263 | +2.053399 Med b'lemma:L' |
| 276 | -2.489806 O b'+1:lemma:o.d.' | 264 | +2.053399 Med b'+1:lemma:broth' |
| 277 | -2.489002 O b'-1:lemma:type' | 265 | +2.047116 Air b'-1:lemma:-' |
| 278 | -2.486890 Gtype b'lemma:pk4854' | 266 | +2.037292 OD b'lemma:0.3' |
| 279 | -2.485914 O b'lemma:for' | 267 | +2.025848 Supp b'lemma:20' |
| 280 | -2.480050 O b'postag:SYM' | 268 | +2.016272 O b'lemma:culture' |
| 281 | -2.476780 Supp b'+1:lemma:hour' | 269 | +2.002299 O b'lemma:affyexp' |
| 282 | -2.458558 Air b'-1:lemma:-' | 270 | +1.995623 Med b'lemma:media' |
| 283 | -2.455765 Anti b'lemma:anti-rpos' | 271 | +1.991975 Med b'+1:lemma:g/l' |
| 284 | -2.449385 Supp b'lemma:Adenine' | 272 | +1.991131 Supp b'-1:lemma:with' |
| 285 | -2.445239 O b'lemma:Fur' | 273 | +1.944808 Gtype b'lemma:\xce\xb4ompr' |
| 286 | -2.444393 O b'lemma:soxs' | 274 | +1.919423 O b'+1:lemma:sparging' |
| 287 | -2.444393 O b'lemma:soxr' | 275 | +1.902878 Phase b'-1:lemma:mid-log' |
| 288 | -2.434249 Temp b'-1:lemma:37' | 276 | +1.879469 O b'-1:lemma:0.3' |
| 289 | -2.428845 Gtype b'lemma:deltaseqa' | 277 | +1.876614 Med b'-1:lemma:glucose' |
| 290 | -2.428845 Gtype b'-1:lemma:old' | 278 | +1.873867 Phase b'lemma:exponentially' |
| 291 | -2.414384 Anti b'+1:lemma:antibody' | 279 | +1.862283 Supp b'+1:lemma:_' |
| 292 | -2.405965 O b'lemma:2-3' | 280 | +1.850019 O b'lemma:genotype/variation' |
| 293 | -2.403476 Temp b'-1:lemma:43' | 281 | +1.840505 Air b'lemma:anaerobically' |
| 294 | -2.394168 Air b'lemma:anerobically' | 282 | +1.834219 Supp b'lemma:Leu' |
| 295 | -2.391084 Substrain b'+1:lemma:phtpg' | 283 | +1.824637 Gversion b'postag:CD' |
| 296 | -2.390362 O b'+1:lemma:chip-seq' | 284 | +1.808661 Technique b'-1:lemma:1' |
| 297 | -2.364093 O b'lemma:chip' | 285 | +1.807281 Med b'+1:lemma:supplement' |
| 298 | -2.344688 pH b'+1:postag:CD' | 286 | +1.791313 Gtype b'lemma:\xce\xb4soxs' |
| 299 | -2.333775 Med b'postag:NNP' | 287 | +1.787667 O b'lemma:oxyr' |
| 300 | -2.308157 Supp b'lemma:iptg' | 288 | +1.777332 Temp b'lemma:43' |
| 301 | -2.301961 O b'+1:lemma:43' | 289 | +1.758917 OD b'+1:lemma:phase' |
| 302 | -2.296886 Gtype b'lemma:\xce\xb4oxyr' | 290 | +1.745787 Gtype b'lemma:pk4854' |
| 303 | -2.293633 O b'lemma:chip-fnr' | 291 | +1.741695 pH b'+1:postag:CD' |
| 304 | -2.288275 Med b'+1:lemma:+' | 292 | +1.718033 O b'lemma:at' |
| 305 | -2.287838 Technique b'-1:lemma:input' | 293 | +1.697274 Gtype b'lemma:ptac' |
| 306 | -2.284745 Gtype b'+1:lemma:ph5' | 294 | +1.696614 Temp b'+1:lemma:\xc2\xb0c' |
| 307 | -2.282924 O b'+1:lemma:sparging' | 295 | +1.693293 Gtype b'-1:lemma:_' |
| 308 | -2.273731 Technique b'+1:lemma:chip-exo' | 296 | +1.690544 O b'lemma:Fur' |
| 309 | -2.256890 Gtype b'lemma:\xce\xb4soxr' | 297 | +1.683055 Phase b'+1:postag:NNS' |
| 310 | -2.248969 O b'lemma:pt7' | 298 | +1.671604 Technique b'-1:lemma:_' |
| 311 | -2.247412 Gtype b'lemma:dfnr' | 299 | +1.638397 O b'+1:lemma:coli' |
| 312 | -2.234348 Technique b'-1:lemma:chip-exo' | 300 | +1.637347 O b'-1:lemma:\xc2\xb0c' |
| 313 | -2.225915 O b'+1:lemma:mid-log' | 301 | +1.637198 Gtype b'+1:lemma:_' |
| 314 | -2.218353 Supp b'+1:lemma:deficient' | 302 | +1.626675 O b'lemma:condition' |
| 315 | -2.214682 Phase b'lemma:phase' | 303 | +1.625147 O b'lemma:ompr' |
| 316 | -2.209324 Phase b'-1:lemma:until' | 304 | +1.620349 O b'-1:lemma:dpd' |
| 317 | -2.209232 Supp b'lemma:methanol' | 305 | +1.606845 Gtype b'postag:-RRB-' |
| 318 | -2.187036 Technique b'postag:NNP' | 306 | +1.599013 O b'+1:lemma:condition' |
| 319 | -2.159413 Temp b'-1:lemma:sample' | 307 | +1.593871 O b'-1:lemma:media' |
| 320 | -2.151326 Gtype b'-1:lemma:nsrr' | 308 | +1.586989 Gtype b'lemma:deltaseqa' |
| 321 | -2.149028 Supp b'lemma:20' | 309 | +1.586989 Gtype b'-1:lemma:old' |
| 322 | -2.143459 pH b'lemma:.5' | 310 | +1.581118 Gtype b'+1:postag::' |
| 323 | -2.143459 pH b'-1:lemma:ph5' | 311 | +1.574655 Supp b'lemma:2h' |
| 324 | -2.130382 Supp b'-1:lemma:with' | 312 | +1.574655 Supp b'-1:lemma:additional' |
| 325 | -2.124595 Phase b'-1:lemma:mid-log' | 313 | +1.572066 Supp b'lemma:Adenine' |
| 326 | -2.122806 Gversion b'+1:lemma:000913' | 314 | +1.555644 Supp b'lemma:0.2' |
| 327 | -2.119158 Temp b'+1:lemma:\xc2\xb0c' | 315 | +1.553939 Med b'lemma:glucose' |
| 328 | -2.116827 O b'lemma:genotype/variation' | 316 | +1.551370 Air b'-1:lemma:co2' |
| 329 | -2.111971 Gtype b'-1:lemma:from' | 317 | +1.550089 O b'-1:lemma:stpa' |
| 330 | -2.099395 Gversion b'lemma:_' | 318 | +1.547031 Phase b'-1:lemma:until' |
| 331 | -2.093842 O b'postag:VBG' | 319 | +1.545602 O b'lemma:escherichia' |
| 332 | -2.087024 Gtype b'-1:lemma::' | 320 | +1.534407 Phase b'+1:lemma:for' |
| 333 | -2.084864 Med b'+1:lemma:-lrb-' | 321 | +1.534111 O b'lemma:to' |
| 334 | -2.083399 Med b'lemma:broth' | 322 | +1.534111 O b'postag:TO' |
| 335 | -2.083399 Med b'-1:lemma:L' | 323 | +1.506351 Air b'-1:postag:CD' |
| 336 | -2.080517 Med b'lemma:L' | 324 | +1.505075 OD b'-1:lemma:~' |
| 337 | 325 | ||
| 338 | 326 | ||
| 339 | Top negative: | 327 | Top negative: |
| 340 | --0.116698 Gtype b'-1:postag:NNP' | 328 | +0.092498 O b'+1:postag:CD' |
| 341 | --0.117399 Med b'-1:postag:NN' | 329 | +0.092371 Anti b'lemma:9e10' |
| 342 | --0.121920 Phase b'-1:postag:NN' | 330 | +0.092371 Anti b'+1:lemma:myc' |
| 343 | --0.126158 O b'-1:lemma:delta' | 331 | +0.092365 Agit b'-1:lemma:at' |
| 344 | --0.126979 O b'lemma:medium' | 332 | +0.088750 OD b'postag:CD' |
| 345 | --0.136307 O b'lemma:10' | 333 | +0.084799 Agit b'lemma:at' |
| 346 | --0.138994 O b'+1:lemma:2.0' | 334 | +0.079600 Gtype b'lemma:knock-out' |
| 347 | --0.140939 O b'-1:postag:IN' | 335 | +0.079374 O b'+1:lemma:rnase' |
| 348 | --0.146352 OD b'+1:lemma:in' | 336 | +0.077611 OD b'-1:postag:CC' |
| 349 | --0.147540 O b'-1:lemma:iptg' | 337 | +0.072829 Supp b'+1:postag:IN' |
| 350 | --0.148360 Gtype b'lemma:ompr' | 338 | +0.069820 Gtype b'lemma:-rcb-' |
| 351 | --0.148713 Supp b'+1:lemma:glucose' | 339 | +0.069801 Air b'-1:lemma:5' |
| 352 | --0.150545 Gtype b'-1:lemma:,' | 340 | +0.066910 Supp b'lemma:\xc2\xb5m' |
| 353 | --0.150545 Gtype b'-1:postag:,' | 341 | +0.066375 O b'-1:lemma:k-12' |
| 354 | --0.152555 O b'+1:lemma:mm' | 342 | +0.064827 O b'+1:postag:FW' |
| 355 | --0.154518 O b'+1:lemma:5' | 343 | +0.064097 O b'+1:lemma:ml' |
| 356 | --0.161052 Air b'postag:CD' | 344 | +0.062110 Gtype b'-1:lemma:-lcb-' |
| 357 | --0.161490 O b'-1:lemma:purify' | 345 | +0.062110 Gtype b'+1:lemma:-rcb-' |
| 358 | --0.162601 O b'+1:lemma:strain' | 346 | +0.058601 OD b'postag:VBD' |
| 359 | --0.164231 O b'-1:lemma:with' | 347 | +0.056775 O b'-1:lemma:or' |
| 360 | --0.165378 O b'-1:lemma:minimal' | 348 | +0.054708 Anti b'-1:lemma:myc' |
| 361 | --0.167055 Air b'-1:lemma:or' | 349 | +0.054377 O b'lemma:4' |
| 362 | --0.177695 O b'+1:lemma:0.4' | 350 | +0.053900 Supp b'+1:postag:RB' |
| 363 | --0.179481 Med b'+1:postag:CC' | 351 | +0.051178 O b'+1:lemma:genbank' |
| 364 | --0.192792 Gtype b'+1:postag:NNS' | 352 | +0.049268 OD b'+1:postag:VBD' |
| 365 | --0.194783 O b'-1:lemma:-lrb-' | 353 | +0.049094 Temp b'+1:lemma:rep1' |
| 366 | --0.199810 Gtype b'-1:lemma:mg1655' | 354 | +0.045714 Temp b'-1:postag:VB' |
| 367 | --0.202202 O b'+1:lemma:antibody' | 355 | +0.036759 O b'-1:lemma:and' |
| 368 | --0.204305 O b'+1:lemma:mg1655' | 356 | +0.035785 Gtype b'lemma:vector' |
| 369 | --0.205357 O b'+1:lemma:minimal' | 357 | +0.034778 Gtype b'+1:postag:JJ' |
| 370 | --0.215743 O b'+1:lemma:.' | 358 | +0.032455 Air b'lemma:n2' |
| 371 | --0.215743 O b'+1:postag:.' | 359 | +0.031453 O b'+1:lemma:anaerobically' |
| 372 | --0.224035 Supp b'+1:postag:IN' | 360 | +0.031113 Supp b'lemma:1g/l' |
| 373 | --0.226319 Technique b'-1:lemma::' | 361 | +0.028939 Anti b'-1:postag:JJ' |
| 374 | --0.228443 Supp b'lemma:and' | 362 | +0.025208 O b'+1:postag:-LRB-' |
| 375 | --0.228851 O b'lemma:e.' | 363 | +0.022522 Supp b'lemma:feso4' |
| 376 | --0.233559 Gtype b'+1:lemma:cra' | 364 | +0.019983 Anti b'-1:postag:NNP' |
| 377 | --0.233930 O b'lemma:8' | 365 | +0.019451 O b'lemma:short' |
| 378 | --0.236052 Gtype b'+1:lemma:a' | 366 | +0.017590 O b'-1:postag:VBD' |
| 379 | --0.236429 O b'lemma:n2' | 367 | +0.016416 OD b'-1:postag:JJ' |
| 380 | --0.240273 O b'-1:postag:-LRB-' | 368 | +0.016240 Gtype b'lemma:soxs-8myc' |
| 381 | --0.243379 O b'-1:lemma:e.' | 369 | +0.016240 Gtype b'lemma:soxr-8myc' |
| 382 | --0.246913 O b'-1:lemma:20' | 370 | +0.015907 Med b'-1:lemma:in' |
| 383 | --0.249761 O b'-1:postag:VBP' | 371 | +0.010217 O b'lemma:build' |
| 384 | --0.250445 O b'+1:lemma:from' | 372 | +0.009692 Gtype b'+1:lemma:strain' |
| 385 | --0.253990 O b'lemma:co2' | 373 | +0.007708 O b'-1:lemma:wp009' |
| 386 | --0.257147 O b'lemma:lb' | 374 | +0.006568 Supp b'+1:postag:CD' |
| 387 | --0.262866 O b'-1:lemma:grow' | 375 | +0.005939 Phase b'postag:RB' |
| 388 | --0.263101 O b'-1:lemma:n2' | 376 | +0.005863 OD b'-1:lemma:at' |
| 389 | --0.266675 Med b'postag:CD' | 377 | +0.005806 O b'+1:postag:JJ' |
| 390 | --0.267433 Med b'+1:postag:NNS' | 378 | +0.005343 O b'+1:lemma:_' |
| 391 | --0.271690 Med b'lemma:-lrb-' | 379 | +0.005004 O b'-1:lemma:genbank' |
| 392 | --0.272421 Med b'postag:-LRB-' | 380 | +0.004892 O b'-1:lemma:for' |
| 393 | --0.274354 Anti b'+1:postag:JJ' | 381 | +0.004437 O b'-1:postag:JJ' |
| 394 | --0.275817 O b'-1:lemma:fresh' | 382 | +0.003005 O b'-1:lemma:0.4' |
| 395 | --0.276458 Gversion b'+1:postag:NN' | 383 | +0.002748 Phase b'+1:postag:RB' |
| 396 | --0.284818 Gtype b'+1:lemma:b' | 384 | +0.002320 O b'+1:lemma:wt' |
| 397 | --0.291947 O b'+1:lemma:until' | 385 | +0.002265 Temp b'-1:postag:CD' |
| 398 | --0.292980 O b'lemma:minimal' | 386 | +0.001918 Gtype b'-1:postag:-LRB-' |
| 399 | --0.294264 O b'lemma:30' | 387 | +0.001584 OD b'+1:lemma:aerobically' |
| 400 | --0.295523 O b'-1:lemma:od600' | 388 | +0.001566 Gtype b'lemma:cra' |
| 401 | --0.299205 O b'+1:lemma:b' | 389 | +0.001535 O b'lemma:and' |
| 402 | --0.302254 O b'lemma:aerobically' | 390 | +0.001302 Anti b'+1:lemma:tag' |
| 403 | --0.310314 O b'lemma:grow' | 391 | +0.001258 Air b'+1:lemma:-' |
| 404 | --0.331454 O b'-1:lemma:0.1' | 392 | +0.000559 O b'+1:lemma:for' |
| 405 | --0.331977 O b'-1:postag:VBN' | 393 | +0.000503 OD b'-1:postag:VBN' |
| 406 | --0.340682 O b'+1:lemma:delta' | 394 | +0.000466 Temp b'-1:postag:NNS' |
| 407 | --0.346089 O b'+1:lemma:-lcb-' | 395 | +0.000335 O b'-1:lemma:one' |
| 408 | --0.347377 O b'-1:lemma:um' | 396 | +0.000284 O b'lemma:acetate' |
| 409 | --0.347377 O b'+1:lemma:paraquat' | 397 | +0.000236 OD b'+1:lemma:\xce\xb4soxr' |
| 410 | --0.348080 O b'+1:postag:-RRB-' | 398 | +0.000229 Anti b'lemma:tag' |
| 411 | --0.348644 Gtype b'postag:CD' | 399 | +0.000227 OD b'-1:lemma:\xce\xb4oxyr' |
| 412 | --0.350220 O b'-1:lemma:chip-exo' | 400 | +0.000204 OD b'lemma:\xce\xb4soxr' |
| 413 | --0.353135 O b'lemma:mg/ml' | 401 | +0.000192 Phase b'-1:lemma:to' |
| 414 | --0.353135 O b'-1:lemma:150' | 402 | +0.000192 Phase b'-1:postag:TO' |
| 415 | --0.368298 O b'-1:lemma:mm' | 403 | +0.000121 OD b'postag:IN' |
| 416 | --0.368952 O b'+1:lemma:phase' | 404 | +0.000100 O b'-1:lemma:genotype/variation' |
| 417 | --0.383392 Phase b'-1:lemma:at' | 405 | +0.000080 Air b'+1:postag::' |
| 418 | --0.383608 Gtype b'lemma:_' | 406 | +0.000059 O b'+1:lemma:to' |
| 419 | --0.386439 O b'+1:postag:IN' | 407 | +0.000059 O b'+1:postag:TO' |
| 420 | --0.389536 O b'lemma:glucose' | 408 | +-0.000037 Gtype b'postag:CD' |
| 421 | --0.397045 Supp b'+1:postag:VBN' | 409 | +-0.000039 O b'+1:lemma:rep1' |
| 422 | --0.406129 O b'postag:RB' | 410 | +-0.000061 O b'-1:lemma:0.1' |
| 423 | --0.417245 O b'lemma:m63' | 411 | +-0.000130 O b'+1:lemma:phase' |
| 424 | --0.417398 OD b'+1:postag:CC' | 412 | +-0.000176 Agit b'postag:NN' |
| 425 | --0.419368 Temp b'postag:JJ' | 413 | +-0.000245 OD b'postag:JJ' |
| 426 | --0.422874 O b'+1:lemma:or' | 414 | +-0.000457 O b'-1:lemma:1' |
| 427 | --0.427973 O b'+1:lemma:%' | 415 | +-0.000503 Air b'postag:CC' |
| 428 | --0.435206 O b'+1:lemma:shake' | 416 | +-0.000998 O b'+1:lemma:aerobically' |
| 429 | --0.441406 OD b'+1:lemma:mid-log' | 417 | +-0.001059 Air b'-1:postag:-LRB-' |
| 430 | --0.442803 Med b'+1:postag:NN' | 418 | +-0.001093 Air b'-1:lemma:-lrb-' |
| 431 | --0.449476 O b'lemma:nacl' | 419 | +-0.001565 Supp b'+1:postag:VBN' |
| 432 | --0.461678 O b'+1:lemma:_' | 420 | +-0.002159 O b'+1:lemma:95' |
| 433 | --0.466634 O b'lemma:od600' | 421 | +-0.002175 O b'-1:lemma:,' |
| 434 | --0.469668 Technique b'-1:postag::' | 422 | +-0.002175 O b'-1:postag:,' |
| 435 | --0.470685 O b'-1:lemma:from' | 423 | +-0.003091 Phase b'-1:postag:NN' |
| 436 | --0.478610 Supp b'postag:CC' | 424 | +-0.003612 O b'+1:lemma:300' |
| 437 | --0.495782 O b'+1:lemma:dissolve' | 425 | +-0.004687 O b'lemma:grow' |
| 438 | --0.501976 Supp b'-1:postag:VBG' | 426 | +-0.005564 Phase b'+1:postag:NN' |
| 439 | --0.521671 O b'-1:lemma:rifampicin' | 427 | +-0.005730 O b'-1:lemma:rpob' |
| 440 | --0.527652 O b'lemma:\xc2\xb0c' | 428 | +-0.005960 O b'-1:lemma:0.2' |
| 441 | --0.532074 O b'-1:lemma:g/l' | 429 | +-0.008901 OD b'+1:postag:CD' |
| 442 | --0.535235 O b'-1:lemma:cra' | 430 | +-0.013960 Gtype b'-1:postag:NN' |
| 443 | --0.535605 pH b'postag:NN' | 431 | +-0.019448 Supp b'-1:postag:NN' |
| 444 | --0.540053 O b'+1:lemma:cell' | 432 | +-0.021094 Supp b'postag:CC' |
| 445 | --0.542400 O b'-1:lemma:mid-log' | 433 | +-0.021674 Air b'+1:lemma:n2' |
| 446 | --0.554731 O b'+1:lemma:Aerobic' | 434 | +-0.023055 Air b'-1:postag:VBN' |
| 447 | --0.557223 OD b'+1:postag:NN' | 435 | +-0.029602 O b'+1:lemma:c' |
| 448 | --0.577398 Temp b'-1:lemma:\xc2\xb0c' | 436 | +-0.029927 Gtype b'+1:lemma:-lrb-' |
| 449 | --0.586593 O b'+1:lemma:rep1' | 437 | +-0.031078 Gtype b'-1:postag:CD' |
| 450 | --0.589048 O b'-1:lemma:30' | 438 | +-0.032455 Supp b'+1:lemma:-rrb-' |
| 451 | --0.595835 Med b'-1:postag:IN' | 439 | +-0.043025 Med b'postag:CD' |
| 452 | --0.598295 O b'lemma:phase' | 440 | +-0.044063 Air b'-1:lemma:n2' |
| 453 | --0.599331 Supp b'-1:lemma:%' | 441 | +-0.051827 O b'+1:lemma:5' |
| 454 | --0.612222 O b'+1:lemma:\xc2\xb0c' | 442 | +-0.052288 Air b'postag:CD' |
| 455 | --0.624875 O b'-1:lemma:affinity' | 443 | +-0.053147 O b'lemma:e.' |
| 456 | --0.636676 OD b'lemma:-lrb-' | 444 | +-0.054046 O b'-1:lemma:sample' |
| 457 | --0.643469 O b'+1:postag:NNS' | 445 | +-0.055910 Supp b'+1:lemma:rifampicin' |
| 458 | --0.649099 Temp b'postag:NN' | 446 | +-0.073647 Anti b'+1:postag:JJ' |
| 459 | --0.649456 O b'lemma:of' | 447 | +-0.076109 Phase b'-1:lemma:at' |
| 460 | --0.658905 Gtype b'-1:postag:SYM' | 448 | +-0.081733 OD b'+1:postag:-LRB-' |
| 461 | --0.660226 OD b'+1:lemma:and' | 449 | +-0.092924 O b'-1:postag:VBN' |
| 462 | --0.660293 O b'+1:lemma:c' | 450 | +-0.093020 Supp b'+1:postag:-RRB-' |
| 463 | --0.672111 O b'lemma:mg1655' | 451 | +-0.100297 Med b'+1:postag:IN' |
| 464 | --0.675080 Gtype b'lemma:delta' | 452 | +-0.133555 O b'lemma:20' |
| 465 | --0.677816 O b'lemma:dissolve' | 453 | +-0.147319 O b'-1:lemma:of' |
| 466 | --0.678428 Supp b'+1:lemma:rifampicin' | 454 | +-0.160013 O b'+1:lemma:0.3' |
| 467 | --0.684724 O b'-1:lemma:co2' | 455 | +-0.162627 Gversion b'+1:postag:NN' |
| 468 | --0.686280 Gtype b'-1:postag:DT' | 456 | +-0.171877 Temp b'postag:JJ' |
| 469 | --0.694863 O b'-1:lemma:o2' | 457 | +-0.175078 Supp b'-1:lemma:%' |
| 470 | --0.722306 Gtype b'+1:lemma:\xe2\x88\x86' | 458 | +-0.185069 Med b'-1:postag:NN' |
| 471 | --0.732614 O b'lemma:150' | 459 | +-0.188392 pH b'postag:NN' |
| 472 | --0.732614 O b'+1:lemma:mg/ml' | 460 | +-0.188459 O b'-1:lemma:-lrb-' |
| 473 | --0.761599 OD b'postag:-LRB-' | 461 | +-0.202621 O b'+1:lemma:%' |
| 474 | --0.772588 Temp b'+1:lemma:to' | 462 | +-0.230099 O b'lemma:phase' |
| 475 | --0.772588 Temp b'+1:postag:TO' | 463 | +-0.232998 O b'+1:postag:NNS' |
| 476 | --0.781297 O b'lemma:anaerobically' | 464 | +-0.236077 O b'+1:lemma:+' |
| 477 | --0.807083 O b'+1:lemma:arginine' | 465 | +-0.253923 O b'-1:lemma:from' |
| 478 | --0.819715 O b'-1:lemma:\xe2\x88\x86' | 466 | +-0.255483 Phase b'postag:JJ' |
| 479 | --0.823821 O b'+1:lemma:0.3' | 467 | +-0.274761 O b'+1:lemma:.' |
| 480 | --0.836002 O b'lemma:dpd' | 468 | +-0.274761 O b'+1:postag:.' |
| 481 | --0.858798 O b'+1:lemma:fecl2' | 469 | +-0.290238 O b'+1:lemma:-rrb-' |
| 482 | --0.878330 Med b'+1:postag:IN' | 470 | +-0.300427 O b'-1:postag:IN' |
| 483 | --0.883801 O b'-1:lemma:until' | 471 | +-0.308229 O b'-1:postag:-LRB-' |
| 484 | --0.890383 O b'lemma:purify' | 472 | +-0.318766 O b'lemma:anaerobically' |
| 485 | --0.893680 Anti b'+1:lemma:anti-fur' | 473 | +-0.351102 Temp b'postag:NN' |
| 486 | --0.905649 O b'lemma:anaerobic' | 474 | +-0.388853 O b'lemma:0.3' |
| 487 | --0.919723 O b'-1:lemma:0.2' | 475 | +-0.414731 O b'+1:postag:VBG' |
| 488 | --0.932910 O b'+1:lemma:300' | 476 | +-0.420993 O b'-1:lemma:~' |
| 489 | --0.948417 O b'-1:lemma:ml' | 477 | +-0.452810 Med b'+1:postag:NN' |
| 490 | --0.951682 O b'-1:lemma:1' | 478 | +-0.476044 O b'lemma:dissolve' |
| 491 | --0.955382 Air b'-1:postag:JJ' | 479 | +-0.483565 O b'+1:lemma:fecl2' |
| 492 | --0.960497 O b'lemma:\xe2\x88\x86' | 480 | +-0.484516 O b'-1:lemma:od600' |
| 493 | --0.979778 O b'-1:lemma:dissolve' | 481 | +-0.490291 O b'+1:postag:IN' |
| 494 | --0.979778 O b'+1:lemma:methanol' | 482 | +-0.498743 O b'lemma:od600' |
| 495 | --0.985663 O b'lemma:fecl2' | 483 | +-0.515814 Air b'-1:postag:JJ' |
| 496 | --0.995333 O b'lemma:media' | 484 | +-0.522065 O b'+1:postag:-RRB-' |
| 497 | --1.037234 Phase b'-1:postag:JJ' | 485 | +-0.532128 Temp b'+1:lemma:to' |
| 498 | --1.042219 O b'lemma:20' | 486 | +-0.532128 Temp b'+1:postag:TO' |
| 499 | --1.048118 O b'lemma:k-12' | 487 | +-0.532162 Technique b'-1:postag::' |
| 500 | --1.067143 Supp b'+1:lemma:acetate' | 488 | +-0.533136 Supp b'+1:lemma:acetate' |
| 501 | --1.079445 O b'lemma:2h' | 489 | +-0.537346 O b'-1:lemma:37' |
| 502 | --1.079445 O b'-1:lemma:additional' | 490 | +-0.567786 O b'lemma:fecl2' |
| 503 | --1.084169 O b'+1:lemma:supplement' | 491 | +-0.603831 O b'lemma:media' |
| 504 | --1.104220 O b'lemma:0.1' | 492 | +-0.607413 O b'lemma:of' |
| 505 | --1.125319 O b'lemma:mid-log' | 493 | +-0.627428 O b'lemma:2h' |
| 506 | --1.136189 O b'lemma:0.2' | 494 | +-0.627428 O b'-1:lemma:additional' |
| 507 | --1.136814 O b'-1:lemma:~' | 495 | +-0.674938 O b'lemma:37' |
| 508 | --1.142555 O b'lemma:0.3' | 496 | +-0.691254 O b'lemma:0.2' |
| 509 | --1.163967 O b'+1:lemma:at' | 497 | +-0.693796 OD b'lemma:-lrb-' |
| 510 | --1.165833 O b'+1:lemma:in' | 498 | +-0.703078 O b'lemma:0.1' |
| 511 | --1.233659 O b'+1:postag:VBG' | 499 | +-0.748625 OD b'+1:postag:NN' |
| 512 | --1.234566 OD b'postag:JJ' | 500 | +-0.774790 O b'-1:lemma:grow' |
| 513 | --1.251923 O b'-1:postag:VBG' | 501 | +-0.776043 O b'+1:lemma:g/l' |
| 514 | --1.261321 Phase b'postag:JJ' | 502 | +-0.814594 O b'+1:lemma:cell' |
| 515 | --1.282079 O b'+1:lemma:g/l' | 503 | +-0.834196 Anti b'postag:NNP' |
| 516 | --1.318236 O b'lemma:\xce\xb4fur' | 504 | +-0.858627 O b'-1:lemma:ompr' |
| 517 | --1.394008 O b'-1:lemma:ompr' | 505 | +-0.928203 O b'-1:postag::' |
| 518 | --1.417347 O b'-1:lemma:sample' | 506 | +-0.939567 O b'lemma:mid-log' |
| 519 | --1.574030 O b'lemma:37' | 507 | +-0.989255 O b'-1:lemma:dissolve' |
| 520 | --1.604365 Supp b'postag:JJ' | 508 | +-0.989255 O b'+1:lemma:methanol' |
| 521 | --1.624714 O b'postag:VBP' | 509 | +-1.014879 O b'+1:lemma:supplement' |
| 522 | --1.649157 O b'-1:postag::' | 510 | +-1.026773 O b'-1:lemma:nsrr' |
| 523 | --1.654774 Air b'postag:NN' | 511 | +-1.030867 O b'lemma:wt' |
| 524 | --1.662186 O b'-1:lemma:rpob' | 512 | +-1.084034 O b'lemma:methanol' |
| 525 | --1.692863 Air b'+1:postag:JJ' | 513 | +-1.094856 O b'-1:lemma:co2' |
| 526 | --1.720211 Anti b'postag:NNP' | 514 | +-1.182260 O b'-1:lemma:IP' |
| 527 | --1.810759 O b'lemma:wt' | 515 | +-1.208078 O b'-1:postag:VBG' |
| 528 | --1.845010 O b'-1:lemma:37' | 516 | +-1.228784 Air b'postag:NN' |
| 529 | --1.856437 O b'+1:lemma:+' | 517 | +-1.321954 Air b'+1:postag:JJ' |
| 530 | --1.877902 O b'-1:lemma:IP' | 518 | +-1.408887 Supp b'postag:JJ' |
| 531 | --1.987331 O b'-1:lemma:2' | 519 | +-1.451813 O b'lemma:rifampicin' |
| 532 | --2.039453 O b'lemma:methanol' | 520 | +-1.529403 O b'+1:lemma:at' |
| 533 | --2.059494 O b'-1:lemma:nsrr' | 521 | +-1.607126 O b'+1:lemma:in' |
| 534 | --2.091546 O b'+1:lemma:2' | 522 | +-1.625216 OD b'postag:-LRB-' |
| 535 | --2.107679 O b'lemma:rifampicin' | 523 | +-2.150760 O b'+1:lemma:2' |
| 536 | --2.361875 O b'+1:lemma:hour' | 524 | +-2.335073 O b'+1:lemma:1' |
| 537 | --2.588783 O b'+1:lemma:1' | 525 | +-2.385540 O b'-1:lemma:2' |
| 538 | --3.600862 O b'-1:lemma:_' | 526 | +-4.052103 O b'-1:lemma::' |
| 539 | --3.688282 O b'-1:lemma::' | 527 | +-4.159550 O b'-1:lemma:_' |
| 540 | 528 | ... | ... |
CRF/reports/report_Run6_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.2615074589465166, 'c2': 0.00276705652339924} | ||
| 5 | +best CV score:0.816301419715609 | ||
| 6 | +model size: 0.07M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.8270102352867752 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.652 0.405 0.500 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.957 1.000 0.978 22 | ||
| 14 | + Med 1.000 0.912 0.954 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.810 0.758 0.783 62 | ||
| 20 | + Anti 1.000 1.000 1.000 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.845 0.877 0.861 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.881 0.706 0.784 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.870 0.796 0.827 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.901670 | ||
| 32 | +OD -> OD 6.662115 | ||
| 33 | +Temp -> Temp 5.932826 | ||
| 34 | +Med -> Med 5.616057 | ||
| 35 | +Supp -> Supp 4.930556 | ||
| 36 | +Air -> Air 4.771871 | ||
| 37 | +Anti -> Anti 4.504604 | ||
| 38 | +Gversion -> Gversion 4.501000 | ||
| 39 | +Phase -> Phase 4.124266 | ||
| 40 | +Technique -> Technique 4.076096 | ||
| 41 | +Gtype -> Gtype 3.973576 | ||
| 42 | +O -> O 3.951466 | ||
| 43 | +pH -> pH 2.018763 | ||
| 44 | +O -> Supp 1.197390 | ||
| 45 | +O -> Technique 1.079203 | ||
| 46 | +Gtype -> Supp 1.043942 | ||
| 47 | +Air -> O 0.963896 | ||
| 48 | +Supp -> O 0.612092 | ||
| 49 | +Substrain -> Gtype 0.476807 | ||
| 50 | +O -> Gtype 0.437647 | ||
| 51 | +Med -> O 0.335890 | ||
| 52 | +Phase -> O 0.267800 | ||
| 53 | +OD -> Phase 0.245045 | ||
| 54 | +Temp -> O 0.202449 | ||
| 55 | +O -> Anti 0.134070 | ||
| 56 | +Technique -> Air 0.008370 | ||
| 57 | +O -> Temp 0.000020 | ||
| 58 | +OD -> Air -0.031556 | ||
| 59 | +Gtype -> OD -0.047613 | ||
| 60 | +Phase -> OD -0.296269 | ||
| 61 | +Gtype -> O -0.463165 | ||
| 62 | +OD -> O -0.559048 | ||
| 63 | +Technique -> O -0.753141 | ||
| 64 | +O -> Air -0.928594 | ||
| 65 | +Agit -> O -1.028076 | ||
| 66 | +Med -> Supp -1.262808 | ||
| 67 | +Substrain -> O -1.295585 | ||
| 68 | + | ||
| 69 | + | ||
| 70 | +Top unlikely transitions: | ||
| 71 | +Agit -> Agit 6.901670 | ||
| 72 | +OD -> OD 6.662115 | ||
| 73 | +Temp -> Temp 5.932826 | ||
| 74 | +Med -> Med 5.616057 | ||
| 75 | +Supp -> Supp 4.930556 | ||
| 76 | +Air -> Air 4.771871 | ||
| 77 | +Anti -> Anti 4.504604 | ||
| 78 | +Gversion -> Gversion 4.501000 | ||
| 79 | +Phase -> Phase 4.124266 | ||
| 80 | +Technique -> Technique 4.076096 | ||
| 81 | +Gtype -> Gtype 3.973576 | ||
| 82 | +O -> O 3.951466 | ||
| 83 | +pH -> pH 2.018763 | ||
| 84 | +O -> Supp 1.197390 | ||
| 85 | +O -> Technique 1.079203 | ||
| 86 | +Gtype -> Supp 1.043942 | ||
| 87 | +Air -> O 0.963896 | ||
| 88 | +Supp -> O 0.612092 | ||
| 89 | +Substrain -> Gtype 0.476807 | ||
| 90 | +O -> Gtype 0.437647 | ||
| 91 | +Med -> O 0.335890 | ||
| 92 | +Phase -> O 0.267800 | ||
| 93 | +OD -> Phase 0.245045 | ||
| 94 | +Temp -> O 0.202449 | ||
| 95 | +O -> Anti 0.134070 | ||
| 96 | +Technique -> Air 0.008370 | ||
| 97 | +O -> Temp 0.000020 | ||
| 98 | +OD -> Air -0.031556 | ||
| 99 | +Gtype -> OD -0.047613 | ||
| 100 | +Phase -> OD -0.296269 | ||
| 101 | +Gtype -> O -0.463165 | ||
| 102 | +OD -> O -0.559048 | ||
| 103 | +Technique -> O -0.753141 | ||
| 104 | +O -> Air -0.928594 | ||
| 105 | +Agit -> O -1.028076 | ||
| 106 | +Med -> Supp -1.262808 | ||
| 107 | +Substrain -> O -1.295585 | ||
| 108 | + | ||
| 109 | + | ||
| 110 | +Top positive: | ||
| 111 | +7.812637 O b'lemma:1' | ||
| 112 | +6.504281 O b'lemma:3' | ||
| 113 | +6.400430 O b'word[:2]:re' | ||
| 114 | +6.304930 Technique b'word[:2]:Ch' | ||
| 115 | +6.279826 Air b'word[:2]:Ae' | ||
| 116 | +5.852043 O b'lemma:2' | ||
| 117 | +5.816867 O b'-2:lemma:_' | ||
| 118 | +5.295700 Anti b'-2:lemma:antibody' | ||
| 119 | +5.063616 Phase b'lemma:stationary' | ||
| 120 | +4.995551 Air b'lemma:anaerobic' | ||
| 121 | +4.918388 O b'lemma:a' | ||
| 122 | +4.801031 O b'+2:lemma:\xc2\xb0c' | ||
| 123 | +4.623525 O b'postag:IN' | ||
| 124 | +4.395080 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 125 | +4.294827 Phase b'lemma:mid-log' | ||
| 126 | +4.288438 Gtype b'-2:lemma:genotype/variation' | ||
| 127 | +4.244795 Technique b'word[:2]:RN' | ||
| 128 | +4.131863 O b'postag::' | ||
| 129 | +4.115454 Temp b'-1:lemma:sample' | ||
| 130 | +3.937161 O b'+2:lemma:cra' | ||
| 131 | +3.620368 O b'lemma:.' | ||
| 132 | +3.620368 O b'postag:.' | ||
| 133 | +3.598727 Gtype b'lemma:type' | ||
| 134 | +3.598727 Gtype b'word[:2]:ty' | ||
| 135 | +3.574166 Gtype b'word[:1]:\xce\x94' | ||
| 136 | +3.565566 Gtype b'word[:2]:Fl' | ||
| 137 | +3.545115 O b'word[:1]:S' | ||
| 138 | +3.473665 O b'word[:1]:G' | ||
| 139 | +3.465522 Med b'word[:2]:LB' | ||
| 140 | +3.406689 O b'-1:lemma:tag' | ||
| 141 | +3.343307 O b'word[:2]:ge' | ||
| 142 | +3.313070 O b'postag:VBN' | ||
| 143 | +3.293280 Supp b'lemma:nitrate' | ||
| 144 | +3.293280 Supp b'word[:2]:ni' | ||
| 145 | +3.264010 O b'+2:lemma:fructose' | ||
| 146 | +3.240524 O b'+1:postag:RB' | ||
| 147 | +3.140733 Supp b'lemma:arginine' | ||
| 148 | +3.120877 O b'word[:1]:B' | ||
| 149 | +3.061754 Air b'word[:2]:An' | ||
| 150 | +3.016856 Supp b'+1:lemma:1' | ||
| 151 | +2.979008 OD b'word[:2]:OD' | ||
| 152 | +2.975113 O b'word[:2]:Rp' | ||
| 153 | +2.916749 Supp b'+1:lemma:\xc2\xb5m' | ||
| 154 | +2.856866 Supp b'word[:1]:I' | ||
| 155 | +2.771072 Temp b'word[:1]:3' | ||
| 156 | +2.740905 Anti b'+1:lemma:antibody' | ||
| 157 | +2.679770 O b'lemma:_' | ||
| 158 | +2.679770 O b'word[:1]:_' | ||
| 159 | +2.661062 Med b'word[:1]:M' | ||
| 160 | +2.651438 Supp b'-2:lemma:shake' | ||
| 161 | +2.637158 Supp b'+1:lemma:2' | ||
| 162 | +2.593344 Med b'lemma:MOPS' | ||
| 163 | +2.593344 Med b'word[:2]:MO' | ||
| 164 | +2.551429 O b'postag:DT' | ||
| 165 | +2.548355 O b'+1:postag:VBP' | ||
| 166 | +2.546726 Gtype b'-2:lemma:delta' | ||
| 167 | +2.530641 Anti b'+2:lemma:antibody' | ||
| 168 | +2.523357 Supp b'lemma:Iron' | ||
| 169 | +2.523357 Supp b'word[:2]:Ir' | ||
| 170 | +2.523357 Supp b'-2:lemma:Anaerobic' | ||
| 171 | +2.503256 Gtype b'word[:1]:d' | ||
| 172 | +2.469925 OD b'word[:1]:O' | ||
| 173 | +2.458839 O b'word[:2]:Cr' | ||
| 174 | +2.448696 O b'-1:lemma:Aerobic' | ||
| 175 | +2.435690 Med b'+2:lemma:with' | ||
| 176 | +2.412032 Supp b'word[:2]:Fe' | ||
| 177 | +2.383646 O b'+2:lemma:chipseq' | ||
| 178 | +2.330968 O b'postag:CC' | ||
| 179 | +2.321337 O b'lemma:purr' | ||
| 180 | +2.315130 Phase b'-2:lemma:phase' | ||
| 181 | +2.313990 Air b'word[:1]:A' | ||
| 182 | +2.307788 Air b'-1:lemma:co2' | ||
| 183 | +2.270559 Gtype b'lemma:nsrr' | ||
| 184 | +2.270559 Gtype b'word[:2]:Ns' | ||
| 185 | +2.230916 O b'-2:lemma:medium' | ||
| 186 | +2.219186 O b'lemma:b' | ||
| 187 | +2.212270 O b'lemma:rpob' | ||
| 188 | +2.211847 Supp b'lemma:acetate' | ||
| 189 | +2.208823 Gtype b'-1:lemma:rpob' | ||
| 190 | +2.193351 Gtype b'+2:lemma:glucose' | ||
| 191 | +2.188714 Supp b'-2:lemma:purr' | ||
| 192 | +2.167125 Substrain b'lemma:mg1655' | ||
| 193 | +2.167125 Substrain b'word[:2]:MG' | ||
| 194 | +2.162173 Supp b'-2:lemma:Lrp' | ||
| 195 | +2.153258 pH b'lemma:ph5' | ||
| 196 | +2.153258 pH b'+1:lemma:.5' | ||
| 197 | +2.127429 Gversion b'lemma:chip-seq' | ||
| 198 | +2.119617 O b'-1:lemma:anaerobic' | ||
| 199 | +2.097711 Gtype b'+1:lemma:type' | ||
| 200 | +2.093597 Gtype b'lemma:\xe2\x88\x86' | ||
| 201 | +2.093597 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 202 | +2.073634 Med b'word[:1]:L' | ||
| 203 | +2.067738 Substrain b'word[:1]:M' | ||
| 204 | +2.066496 Temp b'+1:lemma:\xc2\xb0c' | ||
| 205 | +2.028277 O b'word[:2]:Lr' | ||
| 206 | +1.996518 O b'word[:1]:-' | ||
| 207 | +1.987484 O b'-1:lemma:media' | ||
| 208 | +1.972620 pH b'+1:postag:CD' | ||
| 209 | +1.963565 Supp b'+1:lemma:_' | ||
| 210 | +1.929849 O b'word[:2]:Cu' | ||
| 211 | +1.926238 Gtype b'word[:1]:W' | ||
| 212 | +1.923997 O b'-1:lemma:glucose' | ||
| 213 | +1.920206 Supp b'-1:lemma:Cra' | ||
| 214 | +1.885222 Supp b'+2:lemma:rifampicin' | ||
| 215 | +1.838859 Temp b'-1:lemma:\xcf\x8332' | ||
| 216 | +1.835835 O b'-1:lemma:lb' | ||
| 217 | +1.834634 O b'word[:2]:ch' | ||
| 218 | +1.831989 O b'-2:lemma:myc' | ||
| 219 | +1.820007 Supp b'-1:lemma:with' | ||
| 220 | +1.819919 Supp b'word[:2]:gl' | ||
| 221 | +1.813003 Strain b'lemma:k-12' | ||
| 222 | +1.813003 Strain b'word[:2]:K-' | ||
| 223 | +1.800422 O b'+1:lemma:od600' | ||
| 224 | +1.786685 Supp b'lemma:pq' | ||
| 225 | +1.786685 Supp b'word[:2]:PQ' | ||
| 226 | +1.786098 Supp b'-2:lemma:supplement' | ||
| 227 | +1.773090 O b'lemma:argr' | ||
| 228 | +1.754463 Supp b'-1:postag:CC' | ||
| 229 | +1.752010 Temp b'lemma:43' | ||
| 230 | +1.752010 Temp b'word[:2]:43' | ||
| 231 | +1.748609 Gtype b'-2:lemma:genotype' | ||
| 232 | +1.713554 Supp b'word[:1]:N' | ||
| 233 | +1.705522 Med b'+1:lemma:0.4' | ||
| 234 | +1.705477 Gtype b'-2:postag:DT' | ||
| 235 | +1.699311 O b'lemma:with' | ||
| 236 | +1.697768 Temp b'-2:lemma:\xcf\x8332' | ||
| 237 | +1.696162 Supp b'word[:1]:\xc2\xb5' | ||
| 238 | +1.684853 Supp b'+2:lemma:for' | ||
| 239 | +1.669736 Med b'+2:lemma:b2' | ||
| 240 | +1.659149 Strain b'word[:1]:K' | ||
| 241 | +1.656653 O b'lemma:A' | ||
| 242 | +1.642261 Gtype b'+1:lemma:with' | ||
| 243 | +1.639045 O b'-1:lemma:0.3' | ||
| 244 | +1.637590 O b'-1:lemma:type' | ||
| 245 | +1.629911 Agit b'-2:postag:IN' | ||
| 246 | +1.626799 Supp b'lemma:fructose' | ||
| 247 | +1.598539 Gtype b'word[:2]:cr' | ||
| 248 | +1.562458 Air b'+2:lemma:37' | ||
| 249 | +1.560840 O b'+1:postag:NNP' | ||
| 250 | +1.545322 O b'+1:lemma:nacl' | ||
| 251 | +1.535808 Air b'postag:RB' | ||
| 252 | +1.534546 pH b'word[:2]:pH' | ||
| 253 | +1.526850 Air b'word[:2]:an' | ||
| 254 | +1.494453 Supp b'+1:lemma:hour' | ||
| 255 | +1.493417 Gtype b'hGreek' | ||
| 256 | +1.485107 Gtype b'lemma:wt' | ||
| 257 | +1.475865 O b'lemma:Nac' | ||
| 258 | +1.465086 O b'-2:lemma:~' | ||
| 259 | +1.460815 O b'postag:VBD' | ||
| 260 | +1.455969 OD b'+1:lemma:stationary' | ||
| 261 | +1.446469 Air b'-2:postag:CD' | ||
| 262 | +1.436964 O b'word[:1]:c' | ||
| 263 | +1.435630 Technique b'word[:1]:R' | ||
| 264 | +1.424956 Temp b'-1:lemma:43' | ||
| 265 | +1.424148 Gtype b'+1:lemma:flagtag' | ||
| 266 | +1.422205 OD b'word[:2]:0.' | ||
| 267 | +1.409582 Gtype b'postag:JJ' | ||
| 268 | +1.404450 O b'word[:1]:R' | ||
| 269 | +1.388050 Gversion b'lemma:nc' | ||
| 270 | +1.388050 Gversion b'word[:2]:NC' | ||
| 271 | +1.382998 O b'-2:lemma:co2' | ||
| 272 | +1.376458 O b'+1:lemma:chip-seq' | ||
| 273 | +1.376458 O b'word[:2]:In' | ||
| 274 | +1.373329 Anti b'word[:2]:an' | ||
| 275 | +1.361226 Gtype b'lemma:arca8myc' | ||
| 276 | +1.361226 Gtype b'-2:lemma:chip-arca' | ||
| 277 | +1.348605 O b'word[:1]:E' | ||
| 278 | +1.340934 Supp b'lemma:dpd' | ||
| 279 | +1.340934 Supp b'word[:2]:DP' | ||
| 280 | +1.336435 O b'+1:postag::' | ||
| 281 | +1.336267 O b'+1:postag:VBZ' | ||
| 282 | +1.332234 O b'word[:2]:fo' | ||
| 283 | +1.326668 Gversion b'word[:2]:Ch' | ||
| 284 | +1.308053 Gtype b'-1:lemma:_' | ||
| 285 | +1.306772 Supp b'-1:lemma:+' | ||
| 286 | +1.299920 O b'+2:postag:JJ' | ||
| 287 | +1.288650 Supp b'lemma:rifampicin' | ||
| 288 | +1.282895 OD b'word[:1]:0' | ||
| 289 | +1.279050 Air b'word[:1]:a' | ||
| 290 | +1.278342 Supp b'word[:2]:ri' | ||
| 291 | +1.276274 Air b'-1:lemma:ChIP-Seq' | ||
| 292 | +1.270749 Air b'-2:lemma:IP' | ||
| 293 | +1.268696 Gtype b'word[:1]:F' | ||
| 294 | +1.267720 Air b'-2:lemma:%' | ||
| 295 | +1.250226 Vess b'lemma:flask' | ||
| 296 | +1.250226 Vess b'-1:lemma:warm' | ||
| 297 | +1.250226 Vess b'word[:2]:fl' | ||
| 298 | +1.250226 Vess b'-2:lemma:pre' | ||
| 299 | +1.250226 Vess b'+2:lemma:43' | ||
| 300 | +1.248294 Technique b'-1:postag:CD' | ||
| 301 | +1.241744 Med b'+1:lemma:minimal' | ||
| 302 | +1.240037 Supp b'-2:lemma:for' | ||
| 303 | +1.238645 O b'word[:2]:or' | ||
| 304 | +1.231304 Gversion b'-2:postag:VB' | ||
| 305 | +1.230809 O b'lemma:Custom' | ||
| 306 | +1.221416 Supp b'lemma:no3' | ||
| 307 | +1.221416 Supp b'word[:2]:NO' | ||
| 308 | +1.208975 O b'lemma:-' | ||
| 309 | +1.208565 Supp b'-1:postag:CD' | ||
| 310 | +1.196345 Gtype b'-2:postag:NNS' | ||
| 311 | + | ||
| 312 | + | ||
| 313 | +Top negative: | ||
| 314 | +-0.020651 Vess b'hLower' | ||
| 315 | +-0.021405 Gtype b'word[:1]:g' | ||
| 316 | +-0.022102 Temp b'hGreek' | ||
| 317 | +-0.023747 Air b'-1:lemma:or' | ||
| 318 | +-0.024998 O b'+1:lemma:phase' | ||
| 319 | +-0.026006 O b'-1:lemma:of' | ||
| 320 | +-0.026445 Technique b'lemma:chip-seq' | ||
| 321 | +-0.027849 O b'-1:lemma:the' | ||
| 322 | +-0.028545 O b'-1:lemma:-lrb-' | ||
| 323 | +-0.028751 O b'+1:postag:CD' | ||
| 324 | +-0.029296 O b'+1:lemma:-rrb-' | ||
| 325 | +-0.033680 O b'lemma:150' | ||
| 326 | +-0.033680 O b'+1:lemma:mg/ml' | ||
| 327 | +-0.033680 O b'word[:2]:15' | ||
| 328 | +-0.033680 O b'-2:lemma:concentration' | ||
| 329 | +-0.033737 Supp b'hGreek' | ||
| 330 | +-0.037022 OD b'+1:postag:CD' | ||
| 331 | +-0.037317 O b'-1:lemma:g/l' | ||
| 332 | +-0.040115 Supp b'+2:postag:NNS' | ||
| 333 | +-0.040221 O b'+1:lemma:supplement' | ||
| 334 | +-0.040832 O b'-2:lemma:of' | ||
| 335 | +-0.040980 OD b'postag:JJ' | ||
| 336 | +-0.042683 O b'-1:lemma:rifampicin' | ||
| 337 | +-0.044489 Phase b'+1:postag:NN' | ||
| 338 | +-0.045601 O b'+1:lemma:-lrb-' | ||
| 339 | +-0.046663 O b'word[:1]:p' | ||
| 340 | +-0.050360 Supp b'-2:postag:NN' | ||
| 341 | +-0.052075 Air b'postag:-RRB-' | ||
| 342 | +-0.052075 Air b'word[:2]:-R' | ||
| 343 | +-0.055278 O b'+1:lemma:95' | ||
| 344 | +-0.056644 O b'word[:2]:an' | ||
| 345 | +-0.056812 O b'word[:2]:WT' | ||
| 346 | +-0.058247 Air b'lemma:-rrb-' | ||
| 347 | +-0.058272 Temp b'postag:NN' | ||
| 348 | +-0.060275 Supp b'-1:postag:NN' | ||
| 349 | +-0.068834 O b'word[:1]:g' | ||
| 350 | +-0.075194 O b'lemma:0.1' | ||
| 351 | +-0.075978 O b'+1:lemma:300' | ||
| 352 | +-0.078371 Med b'-2:postag:NNP' | ||
| 353 | +-0.085484 O b'-1:lemma:mm' | ||
| 354 | +-0.090665 Med b'postag:NN' | ||
| 355 | +-0.095552 Anti b'symb' | ||
| 356 | +-0.097859 O b'-1:lemma:IP' | ||
| 357 | +-0.098451 Gtype b'postag:NNP' | ||
| 358 | +-0.098891 O b'+2:lemma:iptg' | ||
| 359 | +-0.099213 O b'+2:lemma:anaerobically' | ||
| 360 | +-0.100378 O b'-1:postag:-LRB-' | ||
| 361 | +-0.100648 Air b'-1:postag:CC' | ||
| 362 | +-0.102134 Phase b'-2:postag:NN' | ||
| 363 | +-0.104356 O b'-2:lemma:30' | ||
| 364 | +-0.104398 O b'-2:lemma:aerobically' | ||
| 365 | +-0.104525 O b'-2:postag:-LRB-' | ||
| 366 | +-0.112855 O b'-1:postag:VBN' | ||
| 367 | +-0.129315 pH b'postag:NN' | ||
| 368 | +-0.130801 O b'lemma:dissolve' | ||
| 369 | +-0.130801 O b'+2:lemma:methanol' | ||
| 370 | +-0.132204 Gversion b'-1:postag:NN' | ||
| 371 | +-0.135249 O b'+2:lemma:-rrb-' | ||
| 372 | +-0.136494 Temp b'-2:postag:NN' | ||
| 373 | +-0.140087 Air b'postag:CC' | ||
| 374 | +-0.143197 Anti b'+1:postag:JJ' | ||
| 375 | +-0.145931 O b'lemma:dpd' | ||
| 376 | +-0.145931 O b'word[:2]:DP' | ||
| 377 | +-0.146304 O b'+1:lemma:minimal' | ||
| 378 | +-0.149480 O b'+2:lemma:mg1655' | ||
| 379 | +-0.153199 O b'lemma:glucose' | ||
| 380 | +-0.156279 O b'word[:2]:OD' | ||
| 381 | +-0.167599 O b'-2:lemma:anaerobically' | ||
| 382 | +-0.169441 O b'+2:lemma:.' | ||
| 383 | +-0.169441 O b'+2:postag:.' | ||
| 384 | +-0.176081 O b'-2:lemma:and' | ||
| 385 | +-0.176601 O b'word[:2]:gl' | ||
| 386 | +-0.178983 O b'word[:2]:30' | ||
| 387 | +-0.182343 Supp b'-2:lemma:-lrb-' | ||
| 388 | +-0.182989 Gtype b'+2:lemma:,' | ||
| 389 | +-0.182989 Gtype b'+2:postag:,' | ||
| 390 | +-0.187940 O b'-2:postag:RB' | ||
| 391 | +-0.188522 Gtype b'-1:postag:NN' | ||
| 392 | +-0.193161 Supp b'-2:postag:-LRB-' | ||
| 393 | +-0.195209 O b'+1:postag:VBG' | ||
| 394 | +-0.195524 Gtype b'-1:lemma:,' | ||
| 395 | +-0.195524 Gtype b'-1:postag:,' | ||
| 396 | +-0.196160 O b'-2:postag:-RRB-' | ||
| 397 | +-0.205382 O b'lemma:media' | ||
| 398 | +-0.205997 O b'+1:lemma:+' | ||
| 399 | +-0.207188 O b'-2:postag:VBG' | ||
| 400 | +-0.214958 O b'-1:postag:IN' | ||
| 401 | +-0.216865 O b'+2:lemma:fnr' | ||
| 402 | +-0.220433 O b'-1:lemma:iptg' | ||
| 403 | +-0.225687 OD b'+2:postag:CD' | ||
| 404 | +-0.226895 Anti b'+1:lemma:anti-fur' | ||
| 405 | +-0.227678 O b'+1:lemma:hour' | ||
| 406 | +-0.227891 O b'+1:lemma:\xc2\xb0c' | ||
| 407 | +-0.233240 O b'+1:postag:-RRB-' | ||
| 408 | +-0.234954 O b'+1:lemma:until' | ||
| 409 | +-0.238139 O b'lemma:2h' | ||
| 410 | +-0.238139 O b'-1:lemma:additional' | ||
| 411 | +-0.238139 O b'word[:2]:2h' | ||
| 412 | +-0.240394 Med b'-2:lemma:grow' | ||
| 413 | +-0.240644 O b'+1:lemma:cell' | ||
| 414 | +-0.240717 O b'lemma:20' | ||
| 415 | +-0.241598 Air b'+1:postag:JJ' | ||
| 416 | +-0.243020 Air b'+2:postag:IN' | ||
| 417 | +-0.249072 O b'+1:lemma:.' | ||
| 418 | +-0.249072 O b'+1:postag:.' | ||
| 419 | +-0.270838 O b'lemma:aerobically' | ||
| 420 | +-0.270838 O b'word[:2]:ae' | ||
| 421 | +-0.272076 O b'-2:lemma:IP' | ||
| 422 | +-0.276552 Anti b'+2:postag:JJ' | ||
| 423 | +-0.282858 O b'word[:2]:mg' | ||
| 424 | +-0.291041 O b'+1:lemma:_' | ||
| 425 | +-0.299542 O b'-2:postag:DT' | ||
| 426 | +-0.314381 O b'word[:1]:F' | ||
| 427 | +-0.315135 O b'+2:lemma:medium' | ||
| 428 | +-0.316365 O b'lemma:k-12' | ||
| 429 | +-0.316365 O b'word[:2]:K-' | ||
| 430 | +-0.323941 O b'-1:lemma:rpob' | ||
| 431 | +-0.324142 O b'+1:lemma:g/l' | ||
| 432 | +-0.324651 OD b'-2:postag:JJ' | ||
| 433 | +-0.330410 Med b'+1:postag:NN' | ||
| 434 | +-0.337573 O b'lemma:anaerobically' | ||
| 435 | +-0.342544 O b'word[:2]:ri' | ||
| 436 | +-0.349990 Supp b'+2:lemma:-rrb-' | ||
| 437 | +-0.361823 O b'-1:lemma:mid-log' | ||
| 438 | +-0.376409 O b'-1:lemma:nsrr' | ||
| 439 | +-0.377222 Anti b'+2:lemma:polyclonal' | ||
| 440 | +-0.377621 O b'-1:lemma:grow' | ||
| 441 | +-0.387403 O b'-2:lemma:rpob' | ||
| 442 | +-0.393536 O b'-1:lemma:37' | ||
| 443 | +-0.397261 Supp b'+2:postag:-RRB-' | ||
| 444 | +-0.408344 O b'word[:1]:K' | ||
| 445 | +-0.411343 O b'-1:lemma:0.2' | ||
| 446 | +-0.413533 O b'lemma:phase' | ||
| 447 | +-0.415095 O b'word[:2]:Fe' | ||
| 448 | +-0.418603 Supp b'-2:postag:JJ' | ||
| 449 | +-0.422914 O b'lemma:rifampicin' | ||
| 450 | +-0.425448 O b'-2:lemma:a' | ||
| 451 | +-0.436504 O b'-2:lemma::' | ||
| 452 | +-0.440069 Med b'-1:postag:NN' | ||
| 453 | +-0.450178 Supp b'+2:lemma:2' | ||
| 454 | +-0.452858 O b'lemma:of' | ||
| 455 | +-0.452858 O b'word[:2]:of' | ||
| 456 | +-0.456778 Supp b'lemma:2' | ||
| 457 | +-0.464475 Agit b'symb' | ||
| 458 | +-0.477506 Supp b'+2:postag:NN' | ||
| 459 | +-0.480481 O b'word[:2]:0.' | ||
| 460 | +-0.484144 O b'+2:lemma:rifampicin' | ||
| 461 | +-0.495023 OD b'+1:postag:NN' | ||
| 462 | +-0.495729 O b'lemma:methanol' | ||
| 463 | +-0.495729 O b'-2:lemma:dissolve' | ||
| 464 | +-0.498568 O b'-1:lemma:dissolve' | ||
| 465 | +-0.498568 O b'+1:lemma:methanol' | ||
| 466 | +-0.501386 O b'postag:RB' | ||
| 467 | +-0.501736 O b'-2:lemma:50' | ||
| 468 | +-0.505561 Agit b'hUpper' | ||
| 469 | +-0.505561 Agit b'hLower' | ||
| 470 | +-0.507205 O b'+1:postag:NNS' | ||
| 471 | +-0.510498 O b'+2:postag:-RRB-' | ||
| 472 | +-0.539348 O b'+2:postag:RB' | ||
| 473 | +-0.550860 O b'word[:1]:0' | ||
| 474 | +-0.576925 Med b'+1:postag:IN' | ||
| 475 | +-0.579947 O b'lemma:mid-log' | ||
| 476 | +-0.589847 O b'word[:1]:d' | ||
| 477 | +-0.639331 Phase b'hUpper' | ||
| 478 | +-0.639331 Phase b'hLower' | ||
| 479 | +-0.644727 O b'+1:postag:IN' | ||
| 480 | +-0.678795 Med b'symb' | ||
| 481 | +-0.717017 Med b'-2:postag:VBN' | ||
| 482 | +-0.751995 Supp b'word[:2]:an' | ||
| 483 | +-0.759518 O b'-1:lemma:co2' | ||
| 484 | +-0.776028 O b'-1:postag:VBG' | ||
| 485 | +-0.792743 O b'-2:lemma:supplement' | ||
| 486 | +-0.794523 O b'word[:2]:me' | ||
| 487 | +-0.883371 O b'word[:2]:ce' | ||
| 488 | +-0.883506 O b'lemma:wt' | ||
| 489 | +-0.888247 O b'+2:lemma:mid-log' | ||
| 490 | +-0.920374 O b'word[:2]:Ch' | ||
| 491 | +-0.968528 O b'word[:1]:N' | ||
| 492 | +-1.043344 O b'-2:lemma:rifampicin' | ||
| 493 | +-1.053670 Gtype b'word[:1]:C' | ||
| 494 | +-1.081691 Supp b'symb' | ||
| 495 | +-1.097239 O b'word[:1]:\xce\x94' | ||
| 496 | +-1.146299 Air b'-1:postag:JJ' | ||
| 497 | +-1.205559 O b'-2:lemma:phase' | ||
| 498 | +-1.226939 Phase b'postag:JJ' | ||
| 499 | +-1.279089 O b'-1:postag::' | ||
| 500 | +-1.306934 O b'word[:1]:P' | ||
| 501 | +-1.435763 Air b'postag:NN' | ||
| 502 | +-1.552893 Supp b'postag:JJ' | ||
| 503 | +-1.656010 O b'+1:lemma:in' | ||
| 504 | +-1.838496 O b'-1:lemma:2' | ||
| 505 | +-1.866172 Technique b'postag:NN' | ||
| 506 | +-2.005093 O b'+1:lemma:at' | ||
| 507 | +-2.021343 Anti b'postag:NNP' | ||
| 508 | +-2.209344 Supp b'+2:postag:CD' | ||
| 509 | +-2.425446 O b'+1:lemma:2' | ||
| 510 | +-2.700819 O b'+1:lemma:1' | ||
| 511 | +-2.961178 OD b'word[:1]:-' | ||
| 512 | +-3.613008 O b'-1:lemma::' | ||
| 513 | +-5.053367 O b'-1:lemma:_' | ||
| 514 | + |
CRF/reports/report_Run6_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.09511707500453928, 'c2': 0.0519939941697524} | ||
| 5 | +best CV score:0.7998412075268018 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7932328849300371 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.889 0.842 0.865 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.444 0.615 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.863 0.774 0.816 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.869 0.684 0.765 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.877 0.742 0.793 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 5.749772 | ||
| 32 | +Agit -> Agit 5.688189 | ||
| 33 | +Temp -> Temp 5.111918 | ||
| 34 | +Anti -> Anti 4.939494 | ||
| 35 | +Med -> Med 4.868494 | ||
| 36 | +Air -> Air 4.689503 | ||
| 37 | +O -> O 4.416867 | ||
| 38 | +Gversion -> Gversion 4.266419 | ||
| 39 | +Gtype -> Gtype 4.185164 | ||
| 40 | +Phase -> Phase 3.973215 | ||
| 41 | +Supp -> Supp 3.799309 | ||
| 42 | +Technique -> Technique 3.093180 | ||
| 43 | +pH -> pH 2.189243 | ||
| 44 | +O -> Supp 1.935389 | ||
| 45 | +Gtype -> Supp 1.770914 | ||
| 46 | +Substrain -> Gtype 1.755994 | ||
| 47 | +Air -> O 1.607275 | ||
| 48 | +O -> Gtype 1.391276 | ||
| 49 | +O -> Technique 1.205509 | ||
| 50 | +Technique -> Air 0.988264 | ||
| 51 | +Gtype -> pH 0.880145 | ||
| 52 | +O -> Temp 0.803834 | ||
| 53 | +O -> Anti 0.795385 | ||
| 54 | +Med -> O 0.789203 | ||
| 55 | +OD -> Phase 0.519647 | ||
| 56 | +Temp -> O 0.509435 | ||
| 57 | +Gtype -> Air 0.467309 | ||
| 58 | +Phase -> O 0.450923 | ||
| 59 | +O -> Gversion 0.422170 | ||
| 60 | +Supp -> O 0.376214 | ||
| 61 | +O -> pH 0.285778 | ||
| 62 | +O -> Strain 0.277519 | ||
| 63 | +O -> Med 0.183463 | ||
| 64 | +O -> Vess 0.108208 | ||
| 65 | +Anti -> O 0.032635 | ||
| 66 | +Gtype -> O 0.000074 | ||
| 67 | +O -> Agit -0.011460 | ||
| 68 | +Anti -> Supp -0.011497 | ||
| 69 | +Air -> Temp -0.016955 | ||
| 70 | +O -> Phase -0.028542 | ||
| 71 | +Gversion -> Technique -0.030101 | ||
| 72 | +OD -> Supp -0.066876 | ||
| 73 | +Technique -> O -0.067595 | ||
| 74 | +Gversion -> Supp -0.135604 | ||
| 75 | +Anti -> Gtype -0.143013 | ||
| 76 | +Air -> Supp -0.157667 | ||
| 77 | +Air -> Med -0.174826 | ||
| 78 | +Gtype -> Phase -0.197920 | ||
| 79 | +Med -> Air -0.205361 | ||
| 80 | +OD -> Gtype -0.211062 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +O -> Med 0.183463 | ||
| 85 | +O -> Vess 0.108208 | ||
| 86 | +Anti -> O 0.032635 | ||
| 87 | +Gtype -> O 0.000074 | ||
| 88 | +O -> Agit -0.011460 | ||
| 89 | +Anti -> Supp -0.011497 | ||
| 90 | +Air -> Temp -0.016955 | ||
| 91 | +O -> Phase -0.028542 | ||
| 92 | +Gversion -> Technique -0.030101 | ||
| 93 | +OD -> Supp -0.066876 | ||
| 94 | +Technique -> O -0.067595 | ||
| 95 | +Gversion -> Supp -0.135604 | ||
| 96 | +Anti -> Gtype -0.143013 | ||
| 97 | +Air -> Supp -0.157667 | ||
| 98 | +Air -> Med -0.174826 | ||
| 99 | +Gtype -> Phase -0.197920 | ||
| 100 | +Med -> Air -0.205361 | ||
| 101 | +OD -> Gtype -0.211062 | ||
| 102 | +Supp -> Temp -0.212874 | ||
| 103 | +Supp -> pH -0.213431 | ||
| 104 | +Supp -> Phase -0.219962 | ||
| 105 | +Gversion -> Air -0.225808 | ||
| 106 | +Temp -> Med -0.253881 | ||
| 107 | +Supp -> Anti -0.265528 | ||
| 108 | +Gtype -> Technique -0.268918 | ||
| 109 | +Technique -> Supp -0.284128 | ||
| 110 | +Phase -> Technique -0.303684 | ||
| 111 | +Anti -> OD -0.378454 | ||
| 112 | +Air -> OD -0.388802 | ||
| 113 | +Gtype -> Gversion -0.434612 | ||
| 114 | +Supp -> Gversion -0.461142 | ||
| 115 | +Supp -> Gtype -0.480734 | ||
| 116 | +Supp -> Technique -0.490490 | ||
| 117 | +Supp -> OD -0.493041 | ||
| 118 | +Gtype -> Med -0.540343 | ||
| 119 | +OD -> Med -0.546645 | ||
| 120 | +OD -> O -0.581637 | ||
| 121 | +Supp -> Air -0.585456 | ||
| 122 | +OD -> Air -0.600309 | ||
| 123 | +O -> Air -0.604701 | ||
| 124 | +Gtype -> Anti -0.624686 | ||
| 125 | +Agit -> O -0.663403 | ||
| 126 | +Substrain -> O -0.867732 | ||
| 127 | +Gtype -> OD -0.893986 | ||
| 128 | +Technique -> OD -0.928156 | ||
| 129 | +Technique -> pH -0.950458 | ||
| 130 | +Technique -> Gtype -0.973255 | ||
| 131 | +Supp -> Med -1.074321 | ||
| 132 | +Med -> Supp -1.297374 | ||
| 133 | +Phase -> OD -1.457940 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +6.617235 O b'lemma:_' | ||
| 138 | +5.661937 O b'lemma:1' | ||
| 139 | +5.054136 Air b'lemma:anaerobic' | ||
| 140 | +4.862395 O b'lemma:2' | ||
| 141 | +4.817668 Strain b'lemma:k-12' | ||
| 142 | +4.770160 Technique b'lemma:ChIP-exo' | ||
| 143 | +4.675717 Supp b'lemma:Iron' | ||
| 144 | +4.608643 Air b'lemma:aerobic' | ||
| 145 | +4.570021 Technique b'lemma:chipseq' | ||
| 146 | +4.467942 Phase b'lemma:stationary' | ||
| 147 | +4.467649 O b'postag:IN' | ||
| 148 | +4.445501 O b'lemma:rpob' | ||
| 149 | +4.351529 Supp b'lemma:pq' | ||
| 150 | +4.293076 Phase b'lemma:mid-log' | ||
| 151 | +4.284291 O b'lemma:3' | ||
| 152 | +4.120140 Supp b'lemma:nh4cl' | ||
| 153 | +4.041253 Supp b'lemma:glucose' | ||
| 154 | +4.028882 Substrain b'lemma:mg1655' | ||
| 155 | +3.913121 Gtype b'lemma:\xce\xb4cra' | ||
| 156 | +3.860061 Air b'-1:lemma:ChIP-Seq' | ||
| 157 | +3.841678 O b'lemma:rep1' | ||
| 158 | +3.777629 Gtype b'lemma:wt' | ||
| 159 | +3.746035 Gtype b'lemma:arca8myc' | ||
| 160 | +3.726494 Gtype b'lemma:flag-tag' | ||
| 161 | +3.726494 Gtype b'-1:lemma:c-terminal' | ||
| 162 | +3.686798 Supp b'+1:lemma:\xc2\xb5m' | ||
| 163 | +3.646788 O b'postag::' | ||
| 164 | +3.631452 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 165 | +3.621528 Gversion b'lemma:asm584v2' | ||
| 166 | +3.593824 O b'lemma:rep2' | ||
| 167 | +3.590555 Air b'lemma:Aerobic' | ||
| 168 | +3.573506 Supp b'lemma:nitrate' | ||
| 169 | +3.508451 Med b'lemma:lb' | ||
| 170 | +3.458882 O b'-1:lemma:tag' | ||
| 171 | +3.422575 O b'lemma:b' | ||
| 172 | +3.405411 O b'lemma:Cra' | ||
| 173 | +3.384112 O b'lemma:a' | ||
| 174 | +3.334968 Med b'lemma:LB' | ||
| 175 | +3.334210 Supp b'lemma:acetate' | ||
| 176 | +3.282677 O b'lemma:rep3' | ||
| 177 | +3.251111 Supp b'lemma:no3' | ||
| 178 | +3.227141 O b'-1:lemma:ChIP-exo' | ||
| 179 | +3.219816 Supp b'lemma:dpd' | ||
| 180 | +3.209926 OD b'lemma:od600' | ||
| 181 | +3.208899 Technique b'lemma:rna-seq' | ||
| 182 | +3.204074 Gtype b'lemma:delta-arca' | ||
| 183 | +3.194919 O b'lemma:.' | ||
| 184 | +3.194919 O b'postag:.' | ||
| 185 | +3.124102 Gtype b'lemma:fnr8myc' | ||
| 186 | +3.110051 O b'lemma:\xcf\x8332' | ||
| 187 | +3.081376 Supp b'lemma:Fe' | ||
| 188 | +3.079283 Gtype b'lemma:\xe2\x88\x86' | ||
| 189 | +3.065167 O b'lemma:Custom' | ||
| 190 | +3.058600 Gtype b'lemma:type' | ||
| 191 | +3.022678 Technique b'lemma:chip-seq' | ||
| 192 | +3.000186 Med b'lemma:MOPS' | ||
| 193 | +2.991397 O b'lemma:CEL' | ||
| 194 | +2.914578 Gversion b'lemma:nc' | ||
| 195 | +2.867833 Technique b'lemma:rnaseq' | ||
| 196 | +2.848233 Supp b'+1:lemma:1' | ||
| 197 | +2.835201 Anti b'lemma:none' | ||
| 198 | +2.827074 Gtype b'+1:lemma:type' | ||
| 199 | +2.826416 O b'-1:lemma:Aerobic' | ||
| 200 | +2.786406 O b'+1:postag:RB' | ||
| 201 | +2.776930 pH b'lemma:ph5' | ||
| 202 | +2.776930 pH b'+1:lemma:.5' | ||
| 203 | +2.774438 O b'+1:lemma:od600' | ||
| 204 | +2.765842 Gtype b'+1:lemma:with' | ||
| 205 | +2.764772 Technique b'lemma:ChIP-Seq' | ||
| 206 | +2.754976 Supp b'lemma:fructose' | ||
| 207 | +2.736514 O b'postag:VBN' | ||
| 208 | +2.708858 Med b'+1:lemma:0.4' | ||
| 209 | +2.677396 Anti b'lemma:seqa' | ||
| 210 | +2.673247 Vess b'lemma:flask' | ||
| 211 | +2.673247 Vess b'-1:lemma:warm' | ||
| 212 | +2.663413 Air b'postag:RB' | ||
| 213 | +2.650175 OD b'lemma:od450' | ||
| 214 | +2.624313 Supp b'lemma:rifampicin' | ||
| 215 | +2.613050 Gtype b'lemma:delta-fnr' | ||
| 216 | +2.611370 O b'lemma:-' | ||
| 217 | +2.593952 Gtype b'lemma:\xce\xb4fur' | ||
| 218 | +2.563276 Supp b'-1:lemma:Cra' | ||
| 219 | +2.543682 O b'-1:lemma:0.3-0.35' | ||
| 220 | +2.528111 Gtype b'lemma:nsrr' | ||
| 221 | +2.524519 Supp b'+1:lemma:2' | ||
| 222 | +2.523387 Gtype b'lemma:wild-type' | ||
| 223 | +2.492162 Gversion b'lemma:chip-seq' | ||
| 224 | +2.476148 Temp b'lemma:\xc2\xb0c' | ||
| 225 | +2.467250 Supp b'+1:lemma:Deficient' | ||
| 226 | +2.437288 Anti b'+1:lemma:antibody' | ||
| 227 | +2.432769 Technique b'-1:lemma:IP' | ||
| 228 | +2.424289 Supp b'lemma:arginine' | ||
| 229 | +2.423238 O b'lemma:affyexp' | ||
| 230 | +2.417028 Med b'lemma:m63' | ||
| 231 | +2.413930 Gversion b'lemma:u00096' | ||
| 232 | +2.413930 Gversion b'+1:lemma:.2' | ||
| 233 | +2.398644 Gversion b'lemma:.2' | ||
| 234 | +2.398644 Gversion b'-1:lemma:u00096' | ||
| 235 | +2.392020 Gversion b'-1:lemma:nc' | ||
| 236 | +2.383653 Gversion b'lemma:000913' | ||
| 237 | +2.375231 O b'lemma:s' | ||
| 238 | +2.367385 Med b'+1:lemma:minimal' | ||
| 239 | +2.347384 Strain b'+1:lemma:substr' | ||
| 240 | +2.340890 O b'-1:lemma:anaerobic' | ||
| 241 | +2.334292 O b'-1:lemma:glucose' | ||
| 242 | +2.302375 O b'lemma:or' | ||
| 243 | +2.301832 Supp b'+1:lemma:_' | ||
| 244 | +2.293105 O b'lemma:with' | ||
| 245 | +2.236084 pH b'+1:postag:CD' | ||
| 246 | +2.207764 Gtype b'-1:lemma:ptac' | ||
| 247 | +2.195074 Gtype b'lemma:\xce\xb4soxs' | ||
| 248 | +2.178906 Gtype b'+1:lemma:flagtag' | ||
| 249 | +2.176058 Temp b'+1:lemma:\xc2\xb0c' | ||
| 250 | +2.168855 O b'lemma:oxyr' | ||
| 251 | +2.168601 O b'-1:lemma:type' | ||
| 252 | +2.157843 O b'-1:lemma:stpa' | ||
| 253 | +2.149393 Gtype b'+1:lemma:pq' | ||
| 254 | +2.146677 Phase b'-1:lemma:mid-log' | ||
| 255 | +2.131005 O b'lemma:chip-arca' | ||
| 256 | +2.119123 O b'-1:lemma:lb' | ||
| 257 | +2.094710 O b'postag:CC' | ||
| 258 | +2.091261 pH b'lemma:.5' | ||
| 259 | +2.091261 pH b'-1:lemma:ph5' | ||
| 260 | +2.082804 Med b'+1:lemma:2.0' | ||
| 261 | +2.061762 Anti b'lemma:anti-myc' | ||
| 262 | +2.057834 Gtype b'lemma:WT' | ||
| 263 | +2.055720 O b'lemma:argr' | ||
| 264 | +2.042900 O b'lemma:chip' | ||
| 265 | +2.041455 Gtype b'-1:lemma:rpob' | ||
| 266 | +2.037173 Temp b'-1:lemma:43' | ||
| 267 | +2.035435 Supp b'lemma:nacl' | ||
| 268 | +2.034038 O b'postag:SYM' | ||
| 269 | +2.032965 Temp b'lemma:43' | ||
| 270 | +2.008638 Med b'+1:lemma:+' | ||
| 271 | +1.996466 Gtype b'lemma:\xce\xb4ompr' | ||
| 272 | +1.985063 Supp b'lemma:iptg' | ||
| 273 | +1.984597 Technique b'-1:lemma:chip-exo' | ||
| 274 | +1.979684 O b'+1:lemma:pq' | ||
| 275 | +1.976317 O b'postag:DT' | ||
| 276 | +1.966888 Temp b'-1:lemma:sample' | ||
| 277 | +1.963356 O b'lemma:ompr' | ||
| 278 | +1.961470 Phase b'lemma:phase' | ||
| 279 | +1.956222 Gtype b'lemma:ptac' | ||
| 280 | +1.954916 Supp b'lemma:Leu' | ||
| 281 | +1.930644 O b'lemma:chip-fnr' | ||
| 282 | +1.929006 Air b'-1:lemma:-' | ||
| 283 | +1.928521 Air b'-1:postag:CD' | ||
| 284 | +1.924588 Supp b'-1:lemma:\xc2\xb5m' | ||
| 285 | +1.923822 Temp b'-1:lemma:37' | ||
| 286 | +1.914522 Air b'lemma:anaerobically' | ||
| 287 | +1.914101 O b'lemma:purr' | ||
| 288 | +1.913285 Anti b'lemma:anti-rpos' | ||
| 289 | +1.908434 O b'+1:lemma:mid-log' | ||
| 290 | +1.907365 Gtype b'+1:lemma:_' | ||
| 291 | +1.901978 Supp b'+1:lemma:hour' | ||
| 292 | +1.884890 Technique b'postag:NNP' | ||
| 293 | +1.883342 Technique b'+1:lemma:chip-exo' | ||
| 294 | +1.879749 O b'lemma:Fur' | ||
| 295 | +1.875921 Supp b'-1:lemma:+' | ||
| 296 | +1.873441 Technique b'-1:lemma:input' | ||
| 297 | +1.872859 Substrain b'+1:lemma:phtpg' | ||
| 298 | +1.868639 Air b'lemma:Anaerobic' | ||
| 299 | +1.868217 Supp b'-1:lemma:with' | ||
| 300 | +1.854650 O b'-1:lemma:l1' | ||
| 301 | +1.843125 O b'+1:lemma:anti-fur' | ||
| 302 | +1.840890 Gtype b'lemma:pk4854' | ||
| 303 | +1.835897 Gtype b'lemma:deltaseqa' | ||
| 304 | +1.835897 Gtype b'-1:lemma:old' | ||
| 305 | +1.834676 O b'lemma:Lrp' | ||
| 306 | +1.815094 Gtype b'+1:lemma:ph5' | ||
| 307 | +1.812550 Temp b'-1:lemma:\xcf\x8332' | ||
| 308 | +1.812482 O b'postag:VBG' | ||
| 309 | +1.802963 Gversion b'+1:lemma:000913' | ||
| 310 | +1.799635 Gtype b'-1:lemma:nsrr' | ||
| 311 | +1.789000 Med b'postag:NNP' | ||
| 312 | +1.788228 Air b'-1:lemma:co2' | ||
| 313 | +1.780588 Gtype b'+1:lemma:aerobic' | ||
| 314 | +1.779977 O b'lemma:culture' | ||
| 315 | +1.779785 Gtype b'-1:lemma::' | ||
| 316 | +1.774675 O b'lemma:genotype/variation' | ||
| 317 | +1.769006 Air b'-1:postag::' | ||
| 318 | +1.759945 Supp b'-1:lemma:mm' | ||
| 319 | +1.755681 Temp b'lemma:37' | ||
| 320 | +1.748053 Phase b'+1:lemma:for' | ||
| 321 | +1.747688 Supp b'lemma:Adenine' | ||
| 322 | +1.745141 OD b'+1:lemma:stationary' | ||
| 323 | +1.744193 O b'lemma:at' | ||
| 324 | +1.744117 Med b'-1:lemma:ml' | ||
| 325 | +1.735692 O b'+1:lemma:43' | ||
| 326 | +1.733011 Supp b'+1:lemma:and' | ||
| 327 | +1.727139 O b'+1:lemma:chip-seq' | ||
| 328 | +1.724866 Med b'lemma:glucose' | ||
| 329 | +1.721249 Supp b'lemma:20' | ||
| 330 | +1.704065 Gtype b'-1:lemma:_' | ||
| 331 | +1.687377 Supp b'+1:lemma:respiratory' | ||
| 332 | +1.681655 Med b'lemma:L' | ||
| 333 | +1.681655 Med b'+1:lemma:broth' | ||
| 334 | +1.672214 Gversion b'lemma:_' | ||
| 335 | +1.650800 Med b'lemma:broth' | ||
| 336 | +1.650800 Med b'-1:lemma:L' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.005569 OD b'+1:lemma:0.4' | ||
| 341 | +-0.005746 Gtype b'-1:lemma:,' | ||
| 342 | +-0.005746 Gtype b'-1:postag:,' | ||
| 343 | +-0.005870 Gtype b'+1:postag:NNS' | ||
| 344 | +-0.006749 Supp b'lemma:mm' | ||
| 345 | +-0.007678 Air b'lemma:70' | ||
| 346 | +-0.007875 O b'+1:lemma:25' | ||
| 347 | +-0.007908 O b'+1:lemma:pahse' | ||
| 348 | +-0.013446 Gtype b'-1:postag:NNP' | ||
| 349 | +-0.017395 O b'-1:lemma:,' | ||
| 350 | +-0.017395 O b'-1:postag:,' | ||
| 351 | +-0.018516 Supp b'-1:postag:NN' | ||
| 352 | +-0.022449 Phase b'+1:postag:NN' | ||
| 353 | +-0.024166 Air b'-1:postag:CC' | ||
| 354 | +-0.027647 Air b'-1:lemma:or' | ||
| 355 | +-0.028887 O b'lemma:o2' | ||
| 356 | +-0.030271 Supp b'postag:CD' | ||
| 357 | +-0.031072 Air b'postag:CC' | ||
| 358 | +-0.032381 Supp b'-1:postag:NNP' | ||
| 359 | +-0.032995 Air b'+1:lemma:-lrb-' | ||
| 360 | +-0.033529 O b'lemma:pahse' | ||
| 361 | +-0.034814 O b'+1:lemma:-lcb-' | ||
| 362 | +-0.035317 O b'+1:lemma:~' | ||
| 363 | +-0.037498 O b'lemma:dpd' | ||
| 364 | +-0.038911 O b'-1:lemma:mm' | ||
| 365 | +-0.039919 O b'-1:postag:VBP' | ||
| 366 | +-0.044315 OD b'postag:IN' | ||
| 367 | +-0.051484 O b'-1:lemma:n2' | ||
| 368 | +-0.055584 OD b'+1:postag:CD' | ||
| 369 | +-0.055696 O b'+1:lemma:95' | ||
| 370 | +-0.055992 Air b'-1:lemma:anaerobically' | ||
| 371 | +-0.056642 O b'-1:lemma:with' | ||
| 372 | +-0.061370 Gtype b'+1:lemma:-lrb-' | ||
| 373 | +-0.068768 O b'+1:lemma:minimal' | ||
| 374 | +-0.069489 Supp b'lemma:and' | ||
| 375 | +-0.082415 O b'lemma:aerobically' | ||
| 376 | +-0.086345 Air b'+1:postag:-LRB-' | ||
| 377 | +-0.088098 O b'lemma:mg/ml' | ||
| 378 | +-0.088098 O b'-1:lemma:150' | ||
| 379 | +-0.094403 Supp b'+1:postag:-RRB-' | ||
| 380 | +-0.096341 O b'lemma:medium' | ||
| 381 | +-0.108911 OD b'+1:lemma:and' | ||
| 382 | +-0.114634 OD b'postag:JJ' | ||
| 383 | +-0.117058 O b'-1:lemma:20' | ||
| 384 | +-0.118245 O b'lemma:grow' | ||
| 385 | +-0.125516 O b'+1:lemma:_' | ||
| 386 | +-0.127227 O b'+1:lemma:antibody' | ||
| 387 | +-0.129539 O b'+1:lemma:b' | ||
| 388 | +-0.129952 O b'-1:lemma:the' | ||
| 389 | +-0.131173 Gversion b'+1:postag:NN' | ||
| 390 | +-0.134503 O b'+1:lemma:phase' | ||
| 391 | +-0.137711 Med b'postag:CD' | ||
| 392 | +-0.142578 O b'+1:lemma:5' | ||
| 393 | +-0.148353 O b'+1:lemma:mg1655' | ||
| 394 | +-0.150243 O b'lemma:\xc2\xb0c' | ||
| 395 | +-0.158759 O b'lemma:glucose' | ||
| 396 | +-0.159456 Supp b'+1:lemma:glucose' | ||
| 397 | +-0.162765 Technique b'-1:lemma::' | ||
| 398 | +-0.163159 O b'postag:RB' | ||
| 399 | +-0.165065 Med b'+1:postag:NN' | ||
| 400 | +-0.165350 Gtype b'+1:lemma:cra' | ||
| 401 | +-0.166969 OD b'+1:postag:CC' | ||
| 402 | +-0.170125 O b'-1:lemma:o2' | ||
| 403 | +-0.173691 O b'-1:lemma:e.' | ||
| 404 | +-0.178574 Gtype b'-1:postag:CD' | ||
| 405 | +-0.178685 O b'+1:lemma:-rrb-' | ||
| 406 | +-0.181033 O b'lemma:co2' | ||
| 407 | +-0.184801 Anti b'+1:postag:JJ' | ||
| 408 | +-0.192236 O b'lemma:e.' | ||
| 409 | +-0.196425 O b'lemma:mg1655' | ||
| 410 | +-0.198559 Gtype b'postag:CD' | ||
| 411 | +-0.208272 O b'-1:postag:IN' | ||
| 412 | +-0.209806 O b'+1:lemma:.' | ||
| 413 | +-0.209806 O b'+1:postag:.' | ||
| 414 | +-0.218423 Med b'-1:postag:IN' | ||
| 415 | +-0.219166 O b'lemma:30' | ||
| 416 | +-0.219834 Supp b'+1:postag:IN' | ||
| 417 | +-0.227296 O b'-1:lemma:um' | ||
| 418 | +-0.227296 O b'+1:lemma:paraquat' | ||
| 419 | +-0.229687 O b'-1:postag:VBN' | ||
| 420 | +-0.236380 Med b'-1:postag:NN' | ||
| 421 | +-0.239831 O b'-1:lemma:chip-exo' | ||
| 422 | +-0.242289 O b'-1:lemma:of' | ||
| 423 | +-0.246361 O b'+1:lemma:%' | ||
| 424 | +-0.247802 O b'-1:lemma:-lrb-' | ||
| 425 | +-0.249050 O b'-1:lemma:iptg' | ||
| 426 | +-0.249812 O b'+1:lemma:dissolve' | ||
| 427 | +-0.255335 O b'-1:lemma:mid-log' | ||
| 428 | +-0.259151 O b'-1:lemma:0.1' | ||
| 429 | +-0.264441 O b'+1:lemma:0.4' | ||
| 430 | +-0.269854 Gtype b'lemma:delta' | ||
| 431 | +-0.270560 O b'+1:lemma:rep1' | ||
| 432 | +-0.279580 Supp b'+1:postag:VBN' | ||
| 433 | +-0.287048 Air b'postag:CD' | ||
| 434 | +-0.290077 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 435 | +-0.292771 O b'lemma:m63' | ||
| 436 | +-0.294023 O b'-1:lemma:from' | ||
| 437 | +-0.312557 Gtype b'-1:postag:DT' | ||
| 438 | +-0.318799 O b'+1:lemma:until' | ||
| 439 | +-0.329610 Supp b'-1:lemma:%' | ||
| 440 | +-0.342219 Temp b'postag:JJ' | ||
| 441 | +-0.343713 Phase b'-1:lemma:at' | ||
| 442 | +-0.349210 O b'+1:lemma:shake' | ||
| 443 | +-0.355247 O b'-1:postag:-LRB-' | ||
| 444 | +-0.370779 O b'-1:lemma:rifampicin' | ||
| 445 | +-0.403678 O b'+1:lemma:Aerobic' | ||
| 446 | +-0.404389 Temp b'-1:lemma:\xc2\xb0c' | ||
| 447 | +-0.409312 O b'+1:postag:-RRB-' | ||
| 448 | +-0.410591 O b'-1:lemma:g/l' | ||
| 449 | +-0.411118 O b'+1:postag:IN' | ||
| 450 | +-0.411360 Gtype b'lemma:_' | ||
| 451 | +-0.413583 Supp b'postag:CC' | ||
| 452 | +-0.421267 O b'lemma:lb' | ||
| 453 | +-0.426132 O b'+1:lemma:cell' | ||
| 454 | +-0.436831 pH b'postag:NN' | ||
| 455 | +-0.446628 Gtype b'-1:postag:SYM' | ||
| 456 | +-0.450017 O b'-1:lemma:grow' | ||
| 457 | +-0.451231 Supp b'+1:lemma:rifampicin' | ||
| 458 | +-0.454808 O b'+1:lemma:c' | ||
| 459 | +-0.459381 O b'lemma:phase' | ||
| 460 | +-0.461745 O b'-1:lemma:30' | ||
| 461 | +-0.462999 O b'-1:lemma:cra' | ||
| 462 | +-0.486521 Temp b'+1:lemma:to' | ||
| 463 | +-0.486521 Temp b'+1:postag:TO' | ||
| 464 | +-0.490929 O b'lemma:150' | ||
| 465 | +-0.490929 O b'+1:lemma:mg/ml' | ||
| 466 | +-0.500528 O b'-1:lemma:until' | ||
| 467 | +-0.504446 Technique b'-1:postag::' | ||
| 468 | +-0.510873 O b'lemma:purify' | ||
| 469 | +-0.517449 Phase b'postag:JJ' | ||
| 470 | +-0.518655 O b'+1:lemma:\xc2\xb0c' | ||
| 471 | +-0.519475 O b'+1:postag:NNS' | ||
| 472 | +-0.532580 Med b'+1:postag:IN' | ||
| 473 | +-0.557262 O b'-1:lemma:od600' | ||
| 474 | +-0.567606 O b'-1:lemma:~' | ||
| 475 | +-0.586909 O b'+1:lemma:arginine' | ||
| 476 | +-0.591624 Anti b'+1:lemma:anti-fur' | ||
| 477 | +-0.595260 O b'-1:lemma:\xe2\x88\x86' | ||
| 478 | +-0.619039 O b'+1:lemma:300' | ||
| 479 | +-0.633916 OD b'lemma:-lrb-' | ||
| 480 | +-0.639826 O b'-1:lemma:1' | ||
| 481 | +-0.645911 Temp b'postag:NN' | ||
| 482 | +-0.655433 O b'lemma:dissolve' | ||
| 483 | +-0.668333 O b'+1:lemma:0.3' | ||
| 484 | +-0.706553 Phase b'-1:postag:JJ' | ||
| 485 | +-0.715634 O b'lemma:anaerobic' | ||
| 486 | +-0.728858 O b'lemma:media' | ||
| 487 | +-0.729613 OD b'postag:-LRB-' | ||
| 488 | +-0.740187 O b'lemma:fecl2' | ||
| 489 | +-0.754262 O b'-1:lemma:0.2' | ||
| 490 | +-0.784045 O b'lemma:anaerobically' | ||
| 491 | +-0.786214 O b'lemma:20' | ||
| 492 | +-0.787962 Supp b'+1:lemma:acetate' | ||
| 493 | +-0.788691 Air b'-1:postag:JJ' | ||
| 494 | +-0.793632 O b'lemma:od600' | ||
| 495 | +-0.801628 O b'lemma:0.3' | ||
| 496 | +-0.804157 O b'+1:lemma:fecl2' | ||
| 497 | +-0.826218 O b'lemma:\xe2\x88\x86' | ||
| 498 | +-0.840032 O b'-1:lemma:ml' | ||
| 499 | +-0.841125 O b'lemma:mid-log' | ||
| 500 | +-0.845143 O b'lemma:of' | ||
| 501 | +-0.852270 O b'-1:postag:VBG' | ||
| 502 | +-0.883031 O b'lemma:0.1' | ||
| 503 | +-0.909031 O b'postag:VBP' | ||
| 504 | +-0.912966 O b'lemma:\xce\xb4fur' | ||
| 505 | +-0.938631 O b'lemma:2h' | ||
| 506 | +-0.938631 O b'-1:lemma:additional' | ||
| 507 | +-0.944242 O b'+1:postag:VBG' | ||
| 508 | +-0.987279 O b'lemma:0.2' | ||
| 509 | +-0.990573 O b'+1:lemma:at' | ||
| 510 | +-1.010504 O b'+1:lemma:in' | ||
| 511 | +-1.029267 O b'lemma:k-12' | ||
| 512 | +-1.051923 O b'lemma:37' | ||
| 513 | +-1.077459 O b'-1:lemma:co2' | ||
| 514 | +-1.077853 OD b'+1:postag:NN' | ||
| 515 | +-1.086493 O b'-1:lemma:sample' | ||
| 516 | +-1.089368 O b'-1:lemma:ompr' | ||
| 517 | +-1.092223 O b'+1:lemma:g/l' | ||
| 518 | +-1.092574 O b'+1:lemma:supplement' | ||
| 519 | +-1.150032 O b'+1:lemma:hour' | ||
| 520 | +-1.170208 O b'-1:lemma:dissolve' | ||
| 521 | +-1.170208 O b'+1:lemma:methanol' | ||
| 522 | +-1.203200 O b'-1:lemma:rpob' | ||
| 523 | +-1.305820 O b'lemma:wt' | ||
| 524 | +-1.316586 O b'lemma:methanol' | ||
| 525 | +-1.391650 O b'+1:lemma:+' | ||
| 526 | +-1.397786 O b'-1:lemma:37' | ||
| 527 | +-1.435566 Air b'+1:postag:JJ' | ||
| 528 | +-1.436410 Supp b'postag:JJ' | ||
| 529 | +-1.476904 Anti b'postag:NNP' | ||
| 530 | +-1.478116 O b'lemma:rifampicin' | ||
| 531 | +-1.558593 O b'-1:postag::' | ||
| 532 | +-1.634246 O b'-1:lemma:nsrr' | ||
| 533 | +-1.646012 Air b'postag:NN' | ||
| 534 | +-1.659601 O b'-1:lemma:IP' | ||
| 535 | +-1.726878 O b'-1:lemma:2' | ||
| 536 | +-1.877977 O b'+1:lemma:2' | ||
| 537 | +-2.024414 O b'+1:lemma:1' | ||
| 538 | +-2.949869 O b'-1:lemma::' | ||
| 539 | +-3.377496 O b'-1:lemma:_' | ||
| 540 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.06622541546379261, 'c2': 0.005803516535443396} | 4 | +best params:{'c1': 0.05263895498644954, 'c2': 0.02804820165832339} |
| 5 | -best CV score:0.806003784483002 | 5 | +best CV score:0.7981312956863408 |
| 6 | -model size: 0.08M | 6 | +model size: 0.09M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.8138835387377452 | 8 | +Flat F1: 0.7933473757323906 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 1.000 0.405 0.577 37 | 11 | OD 1.000 0.405 0.577 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.897 0.912 0.904 57 | 14 | + Med 0.891 0.860 0.875 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | Phase 1.000 0.947 0.973 19 | 18 | Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.939 0.742 0.829 62 | 19 | + Air 0.754 0.742 0.748 62 |
| 20 | - Anti 0.571 0.444 0.500 9 | 20 | + Anti 1.000 0.667 0.800 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.876 0.802 0.837 106 | 22 | + Gtype 0.862 0.764 0.810 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.886 0.684 0.772 136 | 24 | + Supp 0.865 0.662 0.750 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.901 0.758 0.814 480 | 27 | +avg / total 0.876 0.742 0.793 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -Agit -> Agit 6.855330 | 31 | +OD -> OD 5.994059 |
| 32 | -OD -> OD 6.403256 | 32 | +Agit -> Agit 5.826737 |
| 33 | -Temp -> Temp 5.890045 | 33 | +Anti -> Anti 5.330943 |
| 34 | -Anti -> Anti 5.766779 | 34 | +Temp -> Temp 5.278651 |
| 35 | -Med -> Med 5.604768 | 35 | +Med -> Med 5.155905 |
| 36 | -Air -> Air 4.967782 | 36 | +Air -> Air 5.151014 |
| 37 | -O -> O 4.848357 | 37 | +O -> O 4.730130 |
| 38 | -Gversion -> Gversion 4.809684 | 38 | +Gversion -> Gversion 4.652874 |
| 39 | -Gtype -> Gtype 4.697823 | 39 | +Gtype -> Gtype 4.444237 |
| 40 | -Phase -> Phase 4.308635 | 40 | +Phase -> Phase 4.365358 |
| 41 | -Supp -> Supp 4.041417 | 41 | +Supp -> Supp 3.958563 |
| 42 | -Technique -> Technique 3.913590 | 42 | +Technique -> Technique 3.244440 |
| 43 | -pH -> pH 2.570273 | 43 | +pH -> pH 2.428819 |
| 44 | -O -> Supp 1.615671 | 44 | +Substrain -> Gtype 1.967210 |
| 45 | -Substrain -> Gtype 1.499561 | 45 | +O -> Supp 1.913743 |
| 46 | -Gtype -> Supp 1.421628 | 46 | +Gtype -> Supp 1.740880 |
| 47 | -O -> Technique 1.327277 | 47 | +Air -> O 1.659369 |
| 48 | -O -> Gtype 1.086040 | 48 | +O -> Gtype 1.420322 |
| 49 | -Air -> O 0.813429 | 49 | +O -> Technique 1.309639 |
| 50 | -Technique -> Air 0.731728 | 50 | +Technique -> Air 1.158163 |
| 51 | -O -> Temp 0.588704 | 51 | +O -> Temp 0.988819 |
| 52 | -O -> Anti 0.562550 | 52 | +O -> Anti 0.871063 |
| 53 | -Gtype -> pH 0.228949 | 53 | +Gtype -> pH 0.641717 |
| 54 | -Med -> O 0.224698 | 54 | +Gtype -> Air 0.619648 |
| 55 | -O -> Gversion 0.210688 | 55 | +Med -> O 0.556187 |
| 56 | -Temp -> O 0.172212 | 56 | +O -> Strain 0.535992 |
| 57 | -O -> Med 0.102170 | 57 | +O -> Gversion 0.475143 |
| 58 | -Gtype -> Air 0.095373 | 58 | +OD -> Phase 0.435748 |
| 59 | -OD -> Phase 0.013336 | 59 | +O -> Vess 0.303971 |
| 60 | -Anti -> OD -0.004256 | 60 | +O -> pH 0.293252 |
| 61 | -O -> OD -0.004531 | 61 | +Temp -> O 0.145912 |
| 62 | -Gtype -> Gversion -0.009932 | 62 | +Phase -> O 0.144558 |
| 63 | -Phase -> O -0.017336 | 63 | +O -> Med 0.109253 |
| 64 | -O -> Phase -0.028487 | 64 | +O -> Phase 0.077950 |
| 65 | -Phase -> Technique -0.066036 | 65 | +Supp -> O 0.021525 |
| 66 | -Med -> Air -0.087994 | 66 | +Technique -> Gversion -0.000001 |
| 67 | -Gtype -> Phase -0.099971 | 67 | +Gversion -> O -0.000068 |
| 68 | -Supp -> Gversion -0.157806 | 68 | +Phase -> Air -0.004607 |
| 69 | -Anti -> O -0.169383 | 69 | +OD -> Temp -0.005059 |
| 70 | -Supp -> Temp -0.179380 | 70 | +Gversion -> Supp -0.027403 |
| 71 | -Phase -> Air -0.231554 | 71 | +O -> OD -0.027425 |
| 72 | -Supp -> OD -0.255465 | 72 | +Gversion -> Technique -0.034949 |
| 73 | -Supp -> Anti -0.267111 | 73 | +Gtype -> Temp -0.040921 |
| 74 | -Technique -> O -0.296565 | 74 | +OD -> Anti -0.049114 |
| 75 | -OD -> Med -0.297702 | 75 | +Phase -> Med -0.090487 |
| 76 | -Gtype -> Med -0.322957 | 76 | +Air -> Gtype -0.096190 |
| 77 | -Technique -> pH -0.337491 | 77 | +Anti -> Gtype -0.108763 |
| 78 | -Supp -> O -0.351378 | 78 | +Phase -> Supp -0.111803 |
| 79 | -OD -> Gtype -0.357504 | 79 | +Gversion -> Air -0.130125 |
| 80 | -Gtype -> O -0.378451 | 80 | +OD -> Technique -0.144622 |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | Top unlikely transitions: | 83 | Top unlikely transitions: |
| 84 | -O -> Gtype 1.086040 | 84 | +O -> OD -0.027425 |
| 85 | -Air -> O 0.813429 | 85 | +Gversion -> Technique -0.034949 |
| 86 | -Technique -> Air 0.731728 | 86 | +Gtype -> Temp -0.040921 |
| 87 | -O -> Temp 0.588704 | 87 | +OD -> Anti -0.049114 |
| 88 | -O -> Anti 0.562550 | 88 | +Phase -> Med -0.090487 |
| 89 | -Gtype -> pH 0.228949 | 89 | +Air -> Gtype -0.096190 |
| 90 | -Med -> O 0.224698 | 90 | +Anti -> Gtype -0.108763 |
| 91 | -O -> Gversion 0.210688 | 91 | +Phase -> Supp -0.111803 |
| 92 | -Temp -> O 0.172212 | 92 | +Gversion -> Air -0.130125 |
| 93 | -O -> Med 0.102170 | 93 | +OD -> Technique -0.144622 |
| 94 | -Gtype -> Air 0.095373 | 94 | +Gtype -> O -0.160542 |
| 95 | -OD -> Phase 0.013336 | 95 | +Anti -> Supp -0.167912 |
| 96 | -Anti -> OD -0.004256 | 96 | +Technique -> O -0.178664 |
| 97 | -O -> OD -0.004531 | 97 | +Med -> Air -0.260175 |
| 98 | -Gtype -> Gversion -0.009932 | 98 | +Air -> Supp -0.311671 |
| 99 | -Phase -> O -0.017336 | 99 | +Technique -> Supp -0.328788 |
| 100 | -O -> Phase -0.028487 | 100 | +Supp -> pH -0.334244 |
| 101 | -Phase -> Technique -0.066036 | 101 | +Gtype -> Phase -0.336838 |
| 102 | -Med -> Air -0.087994 | 102 | +OD -> Supp -0.350765 |
| 103 | -Gtype -> Phase -0.099971 | 103 | +Supp -> Temp -0.356972 |
| 104 | -Supp -> Gversion -0.157806 | 104 | +Supp -> Anti -0.385974 |
| 105 | -Anti -> O -0.169383 | 105 | +Gtype -> Technique -0.399293 |
| 106 | -Supp -> Temp -0.179380 | 106 | +Phase -> Technique -0.412086 |
| 107 | -Phase -> Air -0.231554 | 107 | +Air -> Med -0.416009 |
| 108 | -Supp -> OD -0.255465 | 108 | +Anti -> OD -0.424355 |
| 109 | -Supp -> Anti -0.267111 | 109 | +Supp -> Phase -0.431186 |
| 110 | -Technique -> O -0.296565 | 110 | +Supp -> Gversion -0.522870 |
| 111 | -OD -> Med -0.297702 | 111 | +Gtype -> Gversion -0.540870 |
| 112 | -Gtype -> Med -0.322957 | 112 | +OD -> Gtype -0.561901 |
| 113 | -Technique -> pH -0.337491 | 113 | +Air -> OD -0.573132 |
| 114 | -Supp -> O -0.351378 | 114 | +Gtype -> Med -0.615085 |
| 115 | -OD -> Gtype -0.357504 | 115 | +OD -> Med -0.650842 |
| 116 | -Gtype -> O -0.378451 | 116 | +Agit -> O -0.652718 |
| 117 | -Supp -> Gtype -0.415119 | 117 | +Temp -> Med -0.665555 |
| 118 | -Supp -> Technique -0.546983 | 118 | +Supp -> OD -0.692627 |
| 119 | -Air -> Supp -0.580378 | 119 | +Supp -> Air -0.710531 |
| 120 | -Air -> OD -0.591958 | 120 | +OD -> Air -0.714126 |
| 121 | -Technique -> Gtype -0.721938 | 121 | +Gtype -> Anti -0.719364 |
| 122 | -OD -> Air -0.869884 | 122 | +O -> Air -0.739232 |
| 123 | -Agit -> O -0.874071 | 123 | +Supp -> Technique -0.742109 |
| 124 | -Technique -> OD -0.901946 | 124 | +OD -> O -0.790102 |
| 125 | -Gtype -> OD -0.968255 | 125 | +Supp -> Gtype -0.840885 |
| 126 | -Supp -> Air -0.992187 | 126 | +Gtype -> OD -0.945945 |
| 127 | -OD -> O -1.076988 | 127 | +Substrain -> O -1.070813 |
| 128 | -Gtype -> Anti -1.093167 | 128 | +Technique -> OD -1.137041 |
| 129 | -O -> Air -1.094876 | 129 | +Technique -> pH -1.137389 |
| 130 | -Supp -> Med -1.350916 | 130 | +Technique -> Gtype -1.148877 |
| 131 | -Substrain -> O -1.483392 | 131 | +Supp -> Med -1.256562 |
| 132 | -Phase -> OD -2.458856 | 132 | +Med -> Supp -1.723937 |
| 133 | -Med -> Supp -2.624787 | 133 | +Phase -> OD -1.987759 |
| 134 | 134 | ||
| 135 | 135 | ||
| 136 | Top positive: | 136 | Top positive: |
| 137 | -9.234903 Supp b'lemma:Iron' | 137 | +7.644011 O b'lemma:_' |
| 138 | -8.941229 Phase b'lemma:stationary' | 138 | +6.383258 O b'lemma:1' |
| 139 | -8.612848 O b'lemma:_' | 139 | +5.640911 Supp b'lemma:Iron' |
| 140 | -8.414915 Air b'lemma:anaerobic' | 140 | +5.580127 Air b'lemma:anaerobic' |
| 141 | -8.110054 Air b'lemma:aerobic' | 141 | +5.538092 O b'lemma:2' |
| 142 | -7.668526 O b'lemma:1' | 142 | +5.534391 Phase b'lemma:stationary' |
| 143 | -7.617369 Supp b'lemma:nitrate' | 143 | +5.531429 Strain b'lemma:k-12' |
| 144 | -7.396629 Technique b'lemma:ChIP-exo' | 144 | +5.334010 Air b'lemma:aerobic' |
| 145 | -7.004694 O b'lemma:rpob' | 145 | +5.315871 Technique b'lemma:ChIP-exo' |
| 146 | -6.951208 Strain b'lemma:k-12' | 146 | +5.203179 O b'lemma:rpob' |
| 147 | -6.929222 Air b'-1:lemma:ChIP-Seq' | 147 | +5.145510 Technique b'lemma:chipseq' |
| 148 | -6.919087 Supp b'lemma:pq' | 148 | +5.013569 O b'lemma:3' |
| 149 | -6.729357 Med b'lemma:MOPS' | 149 | +4.948545 Supp b'lemma:pq' |
| 150 | -6.630951 Technique b'lemma:chipseq' | 150 | +4.940685 Phase b'lemma:mid-log' |
| 151 | -6.338936 Gversion b'lemma:asm584v2' | 151 | +4.780713 O b'postag:IN' |
| 152 | -6.275492 O b'-1:lemma:tag' | 152 | +4.581631 Supp b'lemma:glucose' |
| 153 | -6.112382 Gtype b'lemma:\xce\xb4cra' | 153 | +4.547719 O b'lemma:rep1' |
| 154 | -6.001427 O b'lemma:3' | 154 | +4.536211 Supp b'lemma:nh4cl' |
| 155 | -5.997947 O b'lemma:2' | 155 | +4.513208 Gtype b'lemma:\xce\xb4cra' |
| 156 | -5.921853 O b'lemma:\xcf\x8332' | 156 | +4.467672 Gversion b'lemma:asm584v2' |
| 157 | -5.917190 Gtype b'lemma:flag-tag' | 157 | +4.425282 Substrain b'lemma:mg1655' |
| 158 | -5.917190 Gtype b'-1:lemma:c-terminal' | 158 | +4.379515 Supp b'lemma:nitrate' |
| 159 | -5.881286 Substrain b'lemma:mg1655' | 159 | +4.372720 Air b'-1:lemma:ChIP-Seq' |
| 160 | -5.839915 Phase b'lemma:mid-log' | 160 | +4.334136 O b'lemma:rep2' |
| 161 | -5.810496 Air b'lemma:Aerobic' | 161 | +4.323892 Gtype b'lemma:flag-tag' |
| 162 | -5.761122 O b'lemma:Custom' | 162 | +4.323892 Gtype b'-1:lemma:c-terminal' |
| 163 | -5.570827 O b'lemma:rep1' | 163 | +4.316408 Gtype b'lemma:wt' |
| 164 | -5.482824 Med b'lemma:LB' | 164 | +4.285662 O b'-1:lemma:tag' |
| 165 | -5.430575 Supp b'+1:lemma:\xc2\xb5m' | 165 | +4.263890 Gtype b'lemma:arca8myc' |
| 166 | -5.428880 O b'lemma:rep2' | 166 | +4.176799 Supp b'+1:lemma:\xc2\xb5m' |
| 167 | -5.402169 O b'-1:lemma:ChIP-exo' | 167 | +4.127621 O b'lemma:Cra' |
| 168 | -5.366372 O b'lemma:Cra' | 168 | +4.095187 Air b'lemma:Aerobic' |
| 169 | -5.339186 Supp b'lemma:nh4cl' | 169 | +4.064385 O b'lemma:rep3' |
| 170 | -5.259341 Gtype b'lemma:arca8myc' | 170 | +4.064266 Med b'lemma:LB' |
| 171 | -5.256666 Gtype b'lemma:type' | 171 | +4.025844 Med b'lemma:MOPS' |
| 172 | -5.250724 O b'lemma:rep3' | 172 | +4.002900 Gtype b'-1:lemma:\xe2\x88\x86' |
| 173 | -5.250467 Med b'lemma:lb' | 173 | +3.910979 Supp b'lemma:acetate' |
| 174 | -5.157840 Supp b'lemma:rifampicin' | 174 | +3.828208 O b'lemma:b' |
| 175 | -5.124923 O b'lemma:b' | 175 | +3.803370 Med b'lemma:lb' |
| 176 | -5.111909 Gtype b'lemma:delta-arca' | 176 | +3.794793 Technique b'lemma:rna-seq' |
| 177 | -5.091556 OD b'+1:lemma:stationary' | 177 | +3.753341 O b'lemma:Custom' |
| 178 | -5.048220 Supp b'lemma:glucose' | 178 | +3.719844 O b'lemma:a' |
| 179 | -5.001772 O b'postag:IN' | 179 | +3.708016 Gtype b'lemma:delta-arca' |
| 180 | -4.994648 Gversion b'lemma:nc' | 180 | +3.699048 O b'postag::' |
| 181 | -4.925252 Gtype b'lemma:fnr8myc' | 181 | +3.664175 Supp b'lemma:no3' |
| 182 | -4.905784 OD b'lemma:od450' | 182 | +3.664047 O b'lemma:\xcf\x8332' |
| 183 | -4.901181 Gtype b'+1:lemma:type' | 183 | +3.607483 Supp b'lemma:Fe' |
| 184 | -4.837803 Technique b'lemma:rna-seq' | 184 | +3.591964 O b'lemma:.' |
| 185 | -4.828361 Gtype b'lemma:wt' | 185 | +3.591964 O b'postag:.' |
| 186 | -4.778406 O b'lemma:a' | 186 | +3.579521 Anti b'lemma:none' |
| 187 | -4.678498 Supp b'lemma:acetate' | 187 | +3.563841 Gtype b'lemma:fnr8myc' |
| 188 | -4.667864 Anti b'lemma:none' | 188 | +3.562162 O b'-1:lemma:ChIP-exo' |
| 189 | -4.612775 Technique b'lemma:rnaseq' | 189 | +3.561181 Technique b'lemma:chip-seq' |
| 190 | -4.597784 Supp b'-1:lemma:Cra' | 190 | +3.510825 OD b'lemma:od600' |
| 191 | -4.596321 Technique b'lemma:ChIP-Seq' | 191 | +3.412358 O b'+1:postag:RB' |
| 192 | -4.580488 O b'-1:lemma:0.3-0.35' | 192 | +3.407419 Anti b'lemma:seqa' |
| 193 | -4.559265 Gtype b'-1:lemma:\xe2\x88\x86' | 193 | +3.382318 Gtype b'lemma:\xe2\x88\x86' |
| 194 | -4.543048 Supp b'lemma:no3' | 194 | +3.361106 O b'-1:lemma:Aerobic' |
| 195 | -4.494990 Supp b'lemma:Fe' | 195 | +3.358125 Supp b'lemma:rifampicin' |
| 196 | -4.475916 O b'lemma:-' | 196 | +3.350656 O b'+1:lemma:od600' |
| 197 | -4.465899 Anti b'lemma:seqa' | 197 | +3.328644 O b'lemma:CEL' |
| 198 | -4.445546 Gtype b'lemma:delta-fnr' | 198 | +3.323042 Technique b'lemma:rnaseq' |
| 199 | -4.372585 OD b'lemma:od600' | 199 | +3.290496 Supp b'lemma:dpd' |
| 200 | -4.346955 Technique b'lemma:chip-seq' | 200 | +3.262134 OD b'lemma:od450' |
| 201 | -4.301785 O b'lemma:or' | 201 | +3.253879 Supp b'-1:lemma:Cra' |
| 202 | -4.260295 Gtype b'lemma:\xce\xb4fur' | 202 | +3.220056 Gtype b'lemma:type' |
| 203 | -4.236090 O b'lemma:for' | 203 | +3.206772 O b'lemma:-' |
| 204 | -4.225287 O b'lemma:.' | 204 | +3.203626 Gversion b'lemma:nc' |
| 205 | -4.225287 O b'postag:.' | 205 | +3.187192 Gtype b'lemma:delta-fnr' |
| 206 | -4.161720 Supp b'lemma:dpd' | 206 | +3.177788 Gtype b'+1:lemma:type' |
| 207 | -4.122022 O b'+1:lemma:od600' | 207 | +3.162794 O b'lemma:with' |
| 208 | -4.073219 Vess b'lemma:flask' | 208 | +3.147705 Gversion b'lemma:chip-seq' |
| 209 | -4.073219 Vess b'-1:lemma:warm' | 209 | +3.138667 Gtype b'+1:lemma:with' |
| 210 | -4.068384 O b'-1:lemma:anaerobic' | 210 | +3.108383 O b'postag:VBN' |
| 211 | -4.063188 Supp b'lemma:arginine' | 211 | +3.087768 Supp b'+1:lemma:1' |
| 212 | -4.026011 O b'-1:lemma:Aerobic' | 212 | +3.068972 Med b'+1:lemma:0.4' |
| 213 | -4.023826 O b'postag::' | 213 | +3.017094 Supp b'+1:lemma:Deficient' |
| 214 | -4.014353 Med b'+1:lemma:0.4' | 214 | +3.016316 O b'-1:lemma:0.3-0.35' |
| 215 | -3.983642 O b'lemma:chip' | 215 | +2.982857 pH b'lemma:ph5' |
| 216 | -3.937745 O b'lemma:CEL' | 216 | +2.982857 pH b'+1:lemma:.5' |
| 217 | -3.912596 Supp b'+1:lemma:1' | 217 | +2.980416 Gtype b'lemma:nsrr' |
| 218 | -3.911905 Anti b'lemma:anti-myc' | 218 | +2.966737 Gtype b'lemma:\xce\xb4fur' |
| 219 | -3.908162 O b'-1:lemma:glucose' | 219 | +2.958372 Supp b'lemma:fructose' |
| 220 | -3.843811 Supp b'lemma:fructose' | 220 | +2.936801 Technique b'lemma:ChIP-Seq' |
| 221 | -3.821238 Gtype b'lemma:nsrr' | 221 | +2.931957 Vess b'lemma:flask' |
| 222 | -3.805915 Gversion b'-1:lemma:nc' | 222 | +2.931957 Vess b'-1:lemma:warm' |
| 223 | -3.773446 Gversion b'lemma:chip-seq' | 223 | +2.915047 Supp b'+1:lemma:2' |
| 224 | -3.714736 Gtype b'lemma:\xce\xb4ompr' | 224 | +2.894349 O b'-1:lemma:anaerobic' |
| 225 | -3.700490 O b'-1:lemma:type' | 225 | +2.885376 O b'lemma:for' |
| 226 | -3.624739 O b'+1:postag:RB' | 226 | +2.880024 Supp b'lemma:arginine' |
| 227 | -3.602969 Strain b'+1:lemma:substr' | 227 | +2.839562 Gtype b'lemma:wild-type' |
| 228 | -3.596045 Med b'+1:lemma:minimal' | 228 | +2.812453 Med b'lemma:m63' |
| 229 | -3.588702 O b'-1:lemma:lb' | 229 | +2.747567 Technique b'-1:lemma:IP' |
| 230 | -3.537935 O b'+1:lemma:o.d.' | 230 | +2.716324 O b'lemma:s' |
| 231 | -3.533153 Gversion b'lemma:000913' | 231 | +2.710552 O b'lemma:or' |
| 232 | -3.531194 Temp b'lemma:\xc2\xb0c' | 232 | +2.702444 Anti b'lemma:anti-myc' |
| 233 | -3.520259 pH b'lemma:ph5' | 233 | +2.699635 Temp b'lemma:\xc2\xb0c' |
| 234 | -3.520259 pH b'+1:lemma:.5' | 234 | +2.695860 Anti b'+1:lemma:antibody' |
| 235 | -3.511450 Gtype b'lemma:\xe2\x88\x86' | 235 | +2.689645 Supp b'+1:lemma:_' |
| 236 | -3.509713 Technique b'-1:lemma:IP' | 236 | +2.688117 Gversion b'lemma:u00096' |
| 237 | -3.496996 Med b'lemma:m63' | 237 | +2.688117 Gversion b'+1:lemma:.2' |
| 238 | -3.478233 Anti b'+1:lemma:antibody' | 238 | +2.683722 Air b'postag:RB' |
| 239 | -3.475022 Temp b'-1:lemma:sample' | 239 | +2.679633 O b'-1:lemma:glucose' |
| 240 | -3.455068 Supp b'-1:lemma:+' | 240 | +2.678210 Gversion b'lemma:.2' |
| 241 | -3.449758 Anti b'lemma:anti-rpos' | 241 | +2.678210 Gversion b'-1:lemma:u00096' |
| 242 | -3.439491 Supp b'+1:lemma:2' | 242 | +2.667116 O b'lemma:affyexp' |
| 243 | -3.415465 O b'lemma:oxyr' | 243 | +2.664622 Gversion b'-1:lemma:nc' |
| 244 | -3.385223 Gtype b'lemma:wild-type' | 244 | +2.661661 O b'-1:lemma:type' |
| 245 | -3.352842 O b'postag:VBN' | 245 | +2.656183 O b'lemma:oxyr' |
| 246 | -3.343983 Gtype b'+1:lemma:ph5' | 246 | +2.655810 O b'-1:lemma:lb' |
| 247 | -3.343718 Air b'postag:RB' | 247 | +2.647789 O b'lemma:ompr' |
| 248 | -3.343342 Supp b'lemma:nacl' | 248 | +2.637892 O b'lemma:chip-arca' |
| 249 | -3.321016 Gtype b'-1:lemma:ptac' | 249 | +2.603431 Med b'+1:lemma:minimal' |
| 250 | -3.317465 Gtype b'-1:lemma:rpob' | 250 | +2.589326 Gtype b'-1:lemma:ptac' |
| 251 | -3.298959 O b'lemma:with' | 251 | +2.588251 Gtype b'lemma:WT' |
| 252 | -3.236711 O b'lemma:s' | 252 | +2.566964 Strain b'+1:lemma:substr' |
| 253 | -3.233948 Temp b'-1:lemma:\xcf\x8332' | 253 | +2.543192 O b'-1:lemma:stpa' |
| 254 | -3.232171 Supp b'+1:lemma:hour' | 254 | +2.539508 Gtype b'+1:lemma:flagtag' |
| 255 | -3.226682 O b'-1:lemma:0.3' | 255 | +2.514377 O b'+1:lemma:pq' |
| 256 | -3.213829 Gversion b'lemma:u00096' | 256 | +2.486626 Gtype b'+1:lemma:pq' |
| 257 | -3.213829 Gversion b'+1:lemma:.2' | 257 | +2.461810 OD b'+1:lemma:stationary' |
| 258 | -3.176657 O b'lemma:ompr' | 258 | +2.450698 Gtype b'lemma:\xce\xb4soxs' |
| 259 | -3.173449 Gversion b'lemma:.2' | 259 | +2.426559 Gtype b'lemma:\xce\xb4ompr' |
| 260 | -3.173449 Gversion b'-1:lemma:u00096' | 260 | +2.397900 Gversion b'lemma:000913' |
| 261 | -3.148343 Gtype b'+1:lemma:with' | 261 | +2.394523 Supp b'lemma:nacl' |
| 262 | -3.113186 O b'lemma:at' | 262 | +2.361674 O b'lemma:argr' |
| 263 | -3.099394 Gtype b'lemma:\xce\xb4soxs' | 263 | +2.356992 Air b'lemma:Anaerobic' |
| 264 | -3.081492 Gtype b'lemma:pk4854' | 264 | +2.355669 Temp b'-1:lemma:43' |
| 265 | -3.081097 Supp b'+1:lemma:_' | 265 | +2.353172 Med b'+1:lemma:2.0' |
| 266 | -3.076137 Air b'lemma:Anaerobic' | 266 | +2.352039 O b'+1:lemma:anti-fur' |
| 267 | -3.073681 O b'lemma:Lrp' | 267 | +2.331818 O b'+1:lemma:o.d.' |
| 268 | -3.064586 Phase b'+1:lemma:for' | 268 | +2.323083 Temp b'lemma:43' |
| 269 | -3.047746 O b'+1:lemma:chip-seq' | 269 | +2.321749 Phase b'+1:lemma:for' |
| 270 | -3.047210 Gtype b'lemma:ptac' | 270 | +2.320521 O b'lemma:purr' |
| 271 | -3.045585 Phase b'-1:lemma:until' | 271 | +2.319735 pH b'+1:postag:CD' |
| 272 | -3.043072 O b'-1:lemma:dpd' | 272 | +2.319685 Temp b'-1:lemma:37' |
| 273 | -3.032395 Gtype b'lemma:WT' | 273 | +2.310705 Supp b'lemma:Leu' |
| 274 | -3.021945 Technique b'+1:lemma:chip-exo' | 274 | +2.304466 Gtype b'+1:lemma:ph5' |
| 275 | -3.010904 Supp b'lemma:iptg' | 275 | +2.301687 Gtype b'lemma:pk4854' |
| 276 | -3.001563 Anti b'+1:lemma:polyclonal' | 276 | +2.298021 Temp b'-1:lemma:sample' |
| 277 | -2.979219 Supp b'lemma:Leu' | 277 | +2.282513 O b'lemma:Lrp' |
| 278 | -2.976675 O b'lemma:chip-arca' | 278 | +2.279986 Gtype b'lemma:deltaseqa' |
| 279 | -2.972333 Gtype b'lemma:deltaseqa' | 279 | +2.279986 Gtype b'-1:lemma:old' |
| 280 | -2.972333 Gtype b'-1:lemma:old' | 280 | +2.277445 O b'lemma:chip' |
| 281 | -2.971020 O b'lemma:affyexp' | 281 | +2.262228 Supp b'lemma:iptg' |
| 282 | -2.960652 Air b'lemma:anerobically' | 282 | +2.240490 Supp b'+1:lemma:hour' |
| 283 | -2.938684 Supp b'+1:lemma:Deficient' | 283 | +2.233231 O b'postag:SYM' |
| 284 | -2.913605 Technique b'-1:lemma:chip-exo' | 284 | +2.231698 Technique b'-1:lemma:input' |
| 285 | -2.890017 O b'lemma:argr' | 285 | +2.231669 O b'lemma:Fur' |
| 286 | -2.883731 O b'+1:lemma:sparging' | 286 | +2.229136 O b'postag:CC' |
| 287 | -2.880763 Temp b'-1:lemma:43' | 287 | +2.217992 Temp b'lemma:37' |
| 288 | -2.874818 Med b'-1:lemma:ml' | 288 | +2.213326 Gtype b'lemma:ptac' |
| 289 | -2.860187 pH b'lemma:.5' | 289 | +2.205755 Temp b'+1:lemma:\xc2\xb0c' |
| 290 | -2.860187 pH b'-1:lemma:ph5' | 290 | +2.205719 O b'+1:lemma:chip-seq' |
| 291 | -2.852362 Gtype b'+1:lemma:pq' | 291 | +2.201154 Technique b'-1:lemma:chip-exo' |
| 292 | -2.822626 O b'lemma:soxs' | 292 | +2.196645 Air b'lemma:anaerobically' |
| 293 | -2.822626 O b'lemma:soxr' | 293 | +2.188408 Supp b'-1:lemma:+' |
| 294 | -2.796727 Temp b'lemma:43' | 294 | +2.180623 Supp b'lemma:methanol' |
| 295 | -2.764833 Med b'lemma:L' | 295 | +2.171324 Supp b'lemma:Adenine' |
| 296 | -2.764833 Med b'+1:lemma:broth' | 296 | +2.152039 O b'+1:lemma:mid-log' |
| 297 | -2.762054 O b'+1:postag:NNP' | 297 | +2.130944 Technique b'+1:lemma:chip-exo' |
| 298 | -2.755377 O b'-1:lemma:stpa' | 298 | +2.125495 Substrain b'+1:lemma:phtpg' |
| 299 | -2.737365 Supp b'-1:lemma:\xc2\xb5m' | 299 | +2.122905 Anti b'lemma:anti-rpos' |
| 300 | -2.727294 Temp b'lemma:37' | 300 | +2.120769 Gtype b'+1:lemma:aerobic' |
| 301 | -2.708825 Med b'-1:lemma:LB' | 301 | +2.119993 O b'postag:DT' |
| 302 | -2.705181 O b'-1:lemma:\xc2\xb0c' | 302 | +2.097185 Air b'-1:lemma:-' |
| 303 | -2.692331 O b'+1:lemma:pq' | 303 | +2.073983 Temp b'-1:lemma:\xcf\x8332' |
| 304 | -2.691434 Substrain b'+1:lemma:phtpg' | 304 | +2.068525 Gversion b'+1:lemma:000913' |
| 305 | -2.690410 O b'lemma:purr' | 305 | +2.068199 OD b'-1:lemma:~' |
| 306 | -2.677844 Technique b'+1:lemma:rna-seq' | 306 | +2.065247 Med b'+1:lemma:+' |
| 307 | -2.650316 Technique b'-1:lemma:input' | 307 | +2.062691 Technique b'postag:NNP' |
| 308 | -2.638625 Supp b'lemma:methanol' | 308 | +2.062117 O b'lemma:soxs' |
| 309 | -2.634944 Med b'+1:lemma:contain' | 309 | +2.062117 O b'lemma:soxr' |
| 310 | -2.625097 Supp b'lemma:Adenine' | 310 | +2.060943 O b'lemma:genotype/variation' |
| 311 | -2.623356 O b'-1:lemma:l1' | 311 | +2.059647 Gtype b'-1:lemma:rpob' |
| 312 | -2.607859 O b'postag:DT' | 312 | +2.054988 Phase b'-1:lemma:until' |
| 313 | -2.598485 Med b'+1:lemma:2.0' | 313 | +2.053193 pH b'lemma:.5' |
| 314 | -2.589920 Gtype b'-1:lemma:phtpg' | 314 | +2.053193 pH b'-1:lemma:ph5' |
| 315 | -2.581102 Med b'lemma:glucose' | 315 | +2.050691 Supp b'-1:lemma:\xc2\xb5m' |
| 316 | -2.575292 Temp b'-1:lemma:37' | 316 | +2.046419 Med b'lemma:glucose' |
| 317 | -2.558206 Gtype b'lemma:\xce\xb4soxr' | 317 | +2.038553 O b'-1:lemma:\xc2\xb0c' |
| 318 | -2.550759 Gtype b'+1:lemma:flagtag' | 318 | +2.035969 Med b'postag:NNP' |
| 319 | -2.550220 Gtype b'lemma:\xce\xb4oxyr' | 319 | +2.034678 Phase b'lemma:phase' |
| 320 | -2.549389 Gtype b'+1:lemma:aerobic' | 320 | +2.030470 Phase b'-1:lemma:mid-log' |
| 321 | -2.517172 Supp b'lemma:leucine' | 321 | +2.021890 Air b'-1:postag::' |
| 322 | -2.411127 O b'-1:lemma:media' | 322 | +2.005361 Air b'-1:lemma:co2' |
| 323 | -2.376812 O b'lemma:2-3' | 323 | +1.997853 Supp b'-1:lemma:with' |
| 324 | -2.368251 Med b'lemma:broth' | 324 | +1.995559 O b'-1:lemma:0.3' |
| 325 | -2.368251 Med b'-1:lemma:L' | 325 | +1.991909 Gversion b'lemma:_' |
| 326 | -2.353760 Gtype b'-1:lemma:_' | 326 | +1.982945 Gtype b'-1:lemma:_' |
| 327 | -2.331107 O b'lemma:culture' | 327 | +1.980389 Med b'lemma:L' |
| 328 | -2.315361 Med b'postag:NNP' | 328 | +1.980389 Med b'+1:lemma:broth' |
| 329 | -2.299371 O b'lemma:Fur' | 329 | +1.966184 O b'lemma:chip-fnr' |
| 330 | -2.288936 Supp b'+1:lemma:iptg' | 330 | +1.958899 O b'-1:lemma:l1' |
| 331 | -2.280717 Air b'lemma:anaerobically' | 331 | +1.952668 Gtype b'-1:lemma::' |
| 332 | -2.278786 Air b'-1:lemma:-' | 332 | +1.932594 O b'postag:VBG' |
| 333 | -2.266514 O b'lemma:genotype/variation' | 333 | +1.930427 Med b'-1:lemma:ml' |
| 334 | -2.259722 OD b'lemma:0.3' | 334 | +1.925115 O b'lemma:culture' |
| 335 | -2.256007 Technique b'postag:NNP' | 335 | +1.919503 Vess b'-1:postag:VBN' |
| 336 | -2.224072 Air b'+1:lemma:at' | 336 | +1.917264 Supp b'+1:lemma:and' |
| 337 | 337 | ||
| 338 | 338 | ||
| 339 | Top negative: | 339 | Top negative: |
| 340 | --0.002409 Med b'lemma:-lrb-' | 340 | +-0.017822 O b'+1:lemma:or' |
| 341 | --0.002765 O b'+1:lemma:minimal' | 341 | +-0.020587 OD b'+1:lemma:-lrb-' |
| 342 | --0.002819 Med b'postag:-LRB-' | 342 | +-0.021122 Supp b'-1:lemma:-' |
| 343 | --0.002883 Supp b'-1:lemma:-' | 343 | +-0.021949 Air b'-1:postag:CC' |
| 344 | --0.003857 Agit b'postag:NN' | 344 | +-0.024119 Gtype b'+1:lemma:2' |
| 345 | --0.005100 Air b'-1:lemma:anaerobically' | 345 | +-0.033734 O b'lemma:25' |
| 346 | --0.007289 O b'lemma:lb' | 346 | +-0.035304 OD b'+1:postag:CD' |
| 347 | --0.010248 O b'lemma:mg/ml' | 347 | +-0.036590 O b'+1:lemma:25' |
| 348 | --0.010248 O b'-1:lemma:150' | 348 | +-0.037058 Gtype b'-1:postag:NNP' |
| 349 | --0.010774 Supp b'+1:postag:CD' | 349 | +-0.039077 O b'-1:postag:IN' |
| 350 | --0.011526 Air b'-1:lemma:95' | 350 | +-0.044840 OD b'+1:postag:-LRB-' |
| 351 | --0.011818 Air b'-1:postag:CC' | 351 | +-0.045413 O b'+1:lemma:mm' |
| 352 | --0.012619 Supp b'lemma:mm' | 352 | +-0.045740 O b'+1:lemma:-lcb-' |
| 353 | --0.013393 O b'-1:lemma:1' | 353 | +-0.046719 O b'-1:lemma:the' |
| 354 | --0.013525 O b'+1:lemma:rep1' | 354 | +-0.047082 O b'+1:lemma:grow' |
| 355 | --0.013581 Gtype b'-1:postag:SYM' | 355 | +-0.048829 O b'lemma:mg/ml' |
| 356 | --0.013782 OD b'+1:lemma:-lrb-' | 356 | +-0.048829 O b'-1:lemma:150' |
| 357 | --0.015901 OD b'-1:postag:DT' | 357 | +-0.049033 Air b'postag:CC' |
| 358 | --0.015963 O b'-1:lemma:70' | 358 | +-0.054246 Gtype b'+1:lemma:b' |
| 359 | --0.016924 OD b'+1:postag:-LRB-' | 359 | +-0.057570 O b'+1:lemma:from' |
| 360 | --0.019258 O b'lemma:m63' | 360 | +-0.060387 O b'+1:lemma:phase' |
| 361 | --0.020349 Gversion b'-1:postag:NN' | 361 | +-0.065418 O b'+1:lemma:strain' |
| 362 | --0.021440 OD b'+1:lemma:0.4' | 362 | +-0.068947 O b'-1:lemma:delta' |
| 363 | --0.022594 Air b'-1:lemma:or' | 363 | +-0.070877 O b'+1:lemma:mg1655' |
| 364 | --0.022941 OD b'-1:lemma:a' | 364 | +-0.071913 O b'lemma:medium' |
| 365 | --0.026771 O b'lemma:glucose' | 365 | +-0.073052 OD b'+1:lemma:0.4' |
| 366 | --0.027346 O b'+1:lemma:25' | 366 | +-0.083440 O b'+1:lemma:o2' |
| 367 | --0.028054 OD b'lemma:~' | 367 | +-0.083866 Supp b'-1:postag:NNP' |
| 368 | --0.029216 Gtype b'+1:lemma:cra' | 368 | +-0.086428 O b'lemma:cell' |
| 369 | --0.030932 Gtype b'-1:postag:NN' | 369 | +-0.091253 O b'-1:lemma:with' |
| 370 | --0.031890 O b'+1:lemma:~' | 370 | +-0.092801 O b'-1:lemma:of' |
| 371 | --0.033995 O b'+1:lemma:95' | 371 | +-0.096980 O b'+1:lemma:5' |
| 372 | --0.035517 O b'-1:lemma:-lrb-' | 372 | +-0.102374 O b'-1:postag:DT' |
| 373 | --0.036049 O b'lemma:pahse' | 373 | +-0.109084 Med b'-1:postag:NN' |
| 374 | --0.036135 O b'lemma:purify' | 374 | +-0.110663 O b'+1:lemma:-rrb-' |
| 375 | --0.036681 Gtype b'-1:postag:CD' | 375 | +-0.111886 O b'-1:lemma:iptg' |
| 376 | --0.038170 Med b'-1:lemma:m63' | 376 | +-0.115712 O b'+1:lemma:shake' |
| 377 | --0.042355 O b'+1:lemma:antibody' | 377 | +-0.116030 OD b'lemma:~' |
| 378 | --0.042769 O b'+1:lemma:0.4' | 378 | +-0.118522 O b'+1:lemma:antibody' |
| 379 | --0.043812 O b'-1:lemma:25' | 379 | +-0.128341 Phase b'+1:postag:NN' |
| 380 | --0.050331 Phase b'-1:lemma:at' | 380 | +-0.134706 Gversion b'+1:postag:NN' |
| 381 | --0.051370 O b'+1:lemma:5' | 381 | +-0.136331 Gtype b'+1:lemma:cra' |
| 382 | --0.052602 Phase b'+1:postag:NN' | 382 | +-0.136540 Gtype b'+1:postag:NNS' |
| 383 | --0.053544 OD b'+1:postag:CD' | 383 | +-0.140781 Med b'+1:postag:NN' |
| 384 | --0.055596 O b'+1:lemma:o2' | 384 | +-0.141957 O b'-1:lemma:fresh' |
| 385 | --0.056365 O b'lemma:25' | 385 | +-0.142025 Technique b'-1:lemma::' |
| 386 | --0.065474 O b'-1:lemma:o2' | 386 | +-0.149157 O b'lemma:o2' |
| 387 | --0.070061 Gtype b'-1:postag:DT' | 387 | +-0.156748 O b'-1:lemma:25' |
| 388 | --0.070234 O b'-1:lemma:the' | 388 | +-0.157167 O b'-1:lemma:mm' |
| 389 | --0.072402 O b'+1:lemma:shake' | 389 | +-0.158228 O b'-1:lemma:chip-exo' |
| 390 | --0.079220 Strain b'+1:postag:NN' | 390 | +-0.160848 O b'+1:lemma:b' |
| 391 | --0.079451 O b'+1:lemma:grow' | 391 | +-0.164065 Phase b'-1:lemma:at' |
| 392 | --0.084137 Gtype b'lemma:_' | 392 | +-0.166899 O b'+1:lemma:until' |
| 393 | --0.085976 O b'+1:lemma:mm' | 393 | +-0.170597 Supp b'+1:lemma:glucose' |
| 394 | --0.093102 Med b'+1:postag:CC' | 394 | +-0.179542 Med b'+1:postag:NNS' |
| 395 | --0.095082 Air b'postag:CD' | 395 | +-0.182950 O b'-1:lemma:n2' |
| 396 | --0.097194 O b'lemma:o2' | 396 | +-0.183589 O b'lemma:nacl' |
| 397 | --0.101822 O b'-1:lemma:30' | 397 | +-0.187748 Supp b'lemma:and' |
| 398 | --0.102523 O b'-1:postag:VBN' | 398 | +-0.194897 Air b'-1:lemma:or' |
| 399 | --0.107653 O b'lemma:cell' | 399 | +-0.195731 O b'-1:lemma:e.' |
| 400 | --0.112633 Supp b'-1:postag:NN' | 400 | +-0.198544 O b'-1:lemma:grow' |
| 401 | --0.116970 O b'lemma:grow' | 401 | +-0.202051 O b'-1:postag:VBN' |
| 402 | --0.120130 O b'lemma:30' | 402 | +-0.206509 Anti b'+1:postag:JJ' |
| 403 | --0.121820 Supp b'+1:postag:IN' | 403 | +-0.209400 Supp b'-1:lemma:and' |
| 404 | --0.124237 Supp b'-1:postag:NNP' | 404 | +-0.216443 O b'-1:lemma:-lrb-' |
| 405 | --0.125482 O b'-1:lemma:mm' | 405 | +-0.219626 Supp b'+1:postag:IN' |
| 406 | --0.128019 O b'+1:lemma:300' | 406 | +-0.222298 O b'+1:lemma:0.4' |
| 407 | --0.129344 O b'lemma:\xc2\xb0c' | 407 | +-0.224028 Supp b'-1:postag:VBG' |
| 408 | --0.144557 Med b'-1:postag:NN' | 408 | +-0.227080 Gtype b'postag:CD' |
| 409 | --0.144770 O b'-1:postag:IN' | 409 | +-0.240844 O b'+1:lemma:_' |
| 410 | --0.146162 O b'-1:lemma:of' | 410 | +-0.248019 O b'+1:lemma:.' |
| 411 | --0.149674 Gtype b'+1:lemma:\xe2\x88\x86' | 411 | +-0.248019 O b'+1:postag:.' |
| 412 | --0.154228 OD b'postag:JJ' | 412 | +-0.252029 O b'lemma:n2' |
| 413 | --0.167420 O b'lemma:n2' | 413 | +-0.254610 O b'lemma:30' |
| 414 | --0.171707 O b'lemma:co2' | 414 | +-0.266756 Temp b'-1:lemma:\xc2\xb0c' |
| 415 | --0.172528 O b'lemma:medium' | 415 | +-0.270952 O b'lemma:co2' |
| 416 | --0.179654 Med b'+1:postag:NNS' | 416 | +-0.272046 O b'lemma:grow' |
| 417 | --0.184135 O b'-1:lemma:n2' | 417 | +-0.282947 O b'lemma:\xc2\xb0c' |
| 418 | --0.189770 O b'+1:lemma:-rrb-' | 418 | +-0.283749 O b'-1:lemma:um' |
| 419 | --0.192678 O b'lemma:aerobically' | 419 | +-0.283749 O b'+1:lemma:paraquat' |
| 420 | --0.195762 O b'-1:lemma:with' | 420 | +-0.285506 O b'-1:postag:-LRB-' |
| 421 | --0.196208 O b'-1:lemma:ml' | 421 | +-0.286217 OD b'+1:postag:CC' |
| 422 | --0.204813 Gtype b'-1:lemma:mg1655' | 422 | +-0.286759 Gtype b'-1:postag:CD' |
| 423 | --0.205462 O b'lemma:mg1655' | 423 | +-0.288124 pH b'postag:NN' |
| 424 | --0.206806 O b'-1:lemma:e.' | 424 | +-0.308133 O b'lemma:e.' |
| 425 | --0.207893 O b'lemma:minimal' | 425 | +-0.310367 O b'-1:lemma:mid-log' |
| 426 | --0.224766 Temp b'postag:JJ' | 426 | +-0.312184 O b'-1:lemma:20' |
| 427 | --0.225885 O b'+1:lemma:.' | 427 | +-0.313374 Air b'postag:CD' |
| 428 | --0.225885 O b'+1:postag:.' | 428 | +-0.319126 O b'lemma:minimal' |
| 429 | --0.227519 O b'lemma:e.' | 429 | +-0.319471 Supp b'postag:CC' |
| 430 | --0.236166 O b'-1:lemma:rifampicin' | 430 | +-0.340367 O b'lemma:phase' |
| 431 | --0.247403 O b'-1:lemma:0.2' | 431 | +-0.348342 O b'+1:lemma:cell' |
| 432 | --0.259717 Phase b'-1:postag:NN' | 432 | +-0.348640 O b'-1:lemma:g/l' |
| 433 | --0.263053 Supp b'lemma:and' | 433 | +-0.348662 Temp b'postag:JJ' |
| 434 | --0.270443 O b'-1:postag:-LRB-' | 434 | +-0.352296 O b'-1:lemma:0.1' |
| 435 | --0.283380 O b'-1:lemma:um' | 435 | +-0.359633 O b'-1:lemma:from' |
| 436 | --0.283380 O b'+1:lemma:paraquat' | 436 | +-0.362174 O b'+1:lemma:%' |
| 437 | --0.289228 Med b'postag:CD' | 437 | +-0.363822 O b'postag:RB' |
| 438 | --0.290905 O b'-1:lemma:0.1' | 438 | +-0.381740 Supp b'+1:postag:VBN' |
| 439 | --0.295102 OD b'+1:lemma:and' | 439 | +-0.396234 O b'-1:lemma:rifampicin' |
| 440 | --0.300641 O b'-1:lemma:until' | 440 | +-0.397794 Med b'-1:postag:IN' |
| 441 | --0.306863 O b'+1:lemma:phase' | 441 | +-0.400686 O b'lemma:mg1655' |
| 442 | --0.322631 O b'lemma:phase' | 442 | +-0.402514 Gtype b'lemma:_' |
| 443 | --0.347838 O b'+1:lemma:until' | 443 | +-0.409362 O b'-1:lemma:30' |
| 444 | --0.351130 O b'+1:lemma:_' | 444 | +-0.421905 Gtype b'-1:postag:SYM' |
| 445 | --0.365836 O b'-1:lemma:\xe2\x88\x86' | 445 | +-0.422755 O b'+1:postag:IN' |
| 446 | --0.367298 Anti b'+1:postag:JJ' | 446 | +-0.428375 O b'lemma:m63' |
| 447 | --0.375233 Gtype b'postag:CD' | 447 | +-0.433573 O b'+1:postag:-RRB-' |
| 448 | --0.377830 Supp b'postag:CC' | 448 | +-0.446895 Temp b'postag:NN' |
| 449 | --0.381771 O b'postag:RB' | 449 | +-0.463213 O b'+1:lemma:rep1' |
| 450 | --0.385165 Technique b'-1:lemma::' | 450 | +-0.476889 O b'+1:lemma:Aerobic' |
| 451 | --0.387729 O b'+1:postag:IN' | 451 | +-0.478443 Gtype b'lemma:delta' |
| 452 | --0.405861 O b'+1:postag:-RRB-' | 452 | +-0.482787 Gtype b'+1:lemma:\xe2\x88\x86' |
| 453 | --0.419130 O b'-1:lemma:from' | 453 | +-0.485877 O b'lemma:lb' |
| 454 | --0.425366 O b'-1:lemma:od600' | 454 | +-0.514632 O b'-1:lemma:until' |
| 455 | --0.432532 O b'-1:lemma:cra' | 455 | +-0.518078 Gtype b'-1:postag:DT' |
| 456 | --0.441409 Temp b'postag:NN' | 456 | +-0.525623 O b'lemma:media' |
| 457 | --0.447218 O b'+1:lemma:arginine' | 457 | +-0.525890 Technique b'-1:postag::' |
| 458 | --0.454986 O b'+1:lemma:%' | 458 | +-0.549894 Supp b'-1:lemma:%' |
| 459 | --0.469664 Med b'+1:postag:IN' | 459 | +-0.558083 O b'-1:lemma:o2' |
| 460 | --0.481296 Technique b'-1:postag::' | 460 | +-0.565131 Temp b'+1:lemma:to' |
| 461 | --0.482628 Gversion b'+1:postag:NN' | 461 | +-0.565131 Temp b'+1:postag:TO' |
| 462 | --0.484056 O b'-1:lemma:grow' | 462 | +-0.574257 OD b'+1:lemma:and' |
| 463 | --0.485046 pH b'postag:NN' | 463 | +-0.594559 OD b'+1:postag:NN' |
| 464 | --0.490017 Med b'+1:postag:NN' | 464 | +-0.604948 O b'-1:lemma:od600' |
| 465 | --0.496154 O b'lemma:od600' | 465 | +-0.612232 O b'+1:lemma:arginine' |
| 466 | --0.500947 Supp b'+1:postag:VBN' | 466 | +-0.614534 O b'lemma:purify' |
| 467 | --0.517928 O b'+1:lemma:cell' | 467 | +-0.619152 O b'lemma:150' |
| 468 | --0.520851 O b'-1:lemma:sample' | 468 | +-0.619152 O b'+1:lemma:mg/ml' |
| 469 | --0.520873 OD b'+1:postag:CC' | 469 | +-0.621956 OD b'lemma:-lrb-' |
| 470 | --0.521577 O b'+1:lemma:\xc2\xb0c' | 470 | +-0.622235 O b'-1:lemma:cra' |
| 471 | --0.525190 Anti b'+1:lemma:anti-fur' | 471 | +-0.632733 Med b'+1:postag:IN' |
| 472 | --0.527700 O b'-1:lemma:mid-log' | 472 | +-0.667988 O b'+1:lemma:\xc2\xb0c' |
| 473 | --0.533028 O b'lemma:dissolve' | 473 | +-0.701676 O b'+1:lemma:0.3' |
| 474 | --0.550892 O b'lemma:150' | 474 | +-0.702720 Anti b'+1:lemma:anti-fur' |
| 475 | --0.550892 O b'+1:lemma:mg/ml' | 475 | +-0.715537 O b'+1:lemma:300' |
| 476 | --0.551731 Phase b'-1:postag:JJ' | 476 | +-0.717529 O b'-1:lemma:\xe2\x88\x86' |
| 477 | --0.571169 O b'+1:lemma:0.3' | 477 | +-0.723154 O b'+1:postag:NNS' |
| 478 | --0.600234 O b'postag:VBP' | 478 | +-0.743940 O b'lemma:of' |
| 479 | --0.623446 O b'lemma:anaerobic' | 479 | +-0.750458 OD b'postag:-LRB-' |
| 480 | --0.655760 Gtype b'lemma:delta' | 480 | +-0.756537 O b'lemma:dissolve' |
| 481 | --0.668609 Supp b'+1:lemma:rifampicin' | 481 | +-0.780462 O b'lemma:od600' |
| 482 | --0.673715 O b'lemma:\xce\xb4fur' | 482 | +-0.795527 O b'lemma:0.1' |
| 483 | --0.724036 OD b'+1:postag:NN' | 483 | +-0.801265 O b'+1:lemma:c' |
| 484 | --0.742000 O b'+1:postag:NNS' | 484 | +-0.803646 O b'lemma:20' |
| 485 | --0.743016 O b'+1:lemma:c' | 485 | +-0.821445 O b'-1:lemma:1' |
| 486 | --0.767018 O b'-1:lemma:~' | 486 | +-0.826457 O b'-1:lemma:~' |
| 487 | --0.767765 Air b'-1:postag:JJ' | 487 | +-0.832694 O b'lemma:dpd' |
| 488 | --0.779655 O b'lemma:media' | 488 | +-0.832795 Supp b'+1:lemma:rifampicin' |
| 489 | --0.790170 O b'lemma:\xe2\x88\x86' | 489 | +-0.871325 O b'-1:lemma:0.2' |
| 490 | --0.816065 O b'lemma:fecl2' | 490 | +-0.881067 O b'-1:lemma:co2' |
| 491 | --0.817183 O b'lemma:dpd' | 491 | +-0.888371 Phase b'postag:JJ' |
| 492 | --0.835270 O b'lemma:0.3' | 492 | +-0.896433 Supp b'+1:lemma:acetate' |
| 493 | --0.843288 OD b'lemma:-lrb-' | 493 | +-0.904708 Air b'-1:postag:JJ' |
| 494 | --0.853171 O b'+1:lemma:fecl2' | 494 | +-0.921787 O b'lemma:\xe2\x88\x86' |
| 495 | --0.889568 O b'lemma:0.2' | 495 | +-0.945637 O b'-1:postag:VBG' |
| 496 | --0.905209 OD b'postag:-LRB-' | 496 | +-0.954150 O b'+1:lemma:fecl2' |
| 497 | --0.911568 O b'lemma:anaerobically' | 497 | +-0.973569 O b'lemma:0.3' |
| 498 | --0.915420 O b'lemma:of' | 498 | +-0.992597 O b'lemma:anaerobic' |
| 499 | --0.950583 Temp b'+1:lemma:to' | 499 | +-1.028824 O b'lemma:anaerobically' |
| 500 | --0.950583 Temp b'+1:postag:TO' | 500 | +-1.041899 O b'lemma:0.2' |
| 501 | --0.951305 O b'lemma:20' | 501 | +-1.042250 O b'lemma:k-12' |
| 502 | --0.951858 O b'-1:lemma:co2' | 502 | +-1.074389 O b'+1:lemma:supplement' |
| 503 | --1.045949 O b'lemma:0.1' | 503 | +-1.076645 O b'lemma:2h' |
| 504 | --1.056174 O b'+1:lemma:supplement' | 504 | +-1.076645 O b'-1:lemma:additional' |
| 505 | --1.088532 Supp b'+1:lemma:acetate' | 505 | +-1.091822 O b'-1:lemma:dissolve' |
| 506 | --1.092708 O b'+1:postag:VBG' | 506 | +-1.091822 O b'+1:lemma:methanol' |
| 507 | --1.103190 O b'-1:postag:VBG' | 507 | +-1.154399 O b'lemma:mid-log' |
| 508 | --1.119328 O b'lemma:2h' | 508 | +-1.157754 O b'lemma:\xce\xb4fur' |
| 509 | --1.119328 O b'-1:lemma:additional' | 509 | +-1.158951 OD b'postag:JJ' |
| 510 | --1.131219 Supp b'-1:lemma:%' | 510 | +-1.162611 O b'+1:lemma:g/l' |
| 511 | --1.142227 O b'-1:lemma:rpob' | 511 | +-1.185695 O b'+1:lemma:in' |
| 512 | --1.149700 O b'lemma:mid-log' | 512 | +-1.190815 Phase b'-1:postag:JJ' |
| 513 | --1.157098 Med b'-1:postag:IN' | 513 | +-1.231014 O b'lemma:fecl2' |
| 514 | --1.158833 O b'-1:lemma:dissolve' | 514 | +-1.238272 O b'+1:postag:VBG' |
| 515 | --1.158833 O b'+1:lemma:methanol' | 515 | +-1.266384 O b'lemma:37' |
| 516 | --1.159433 O b'-1:postag::' | 516 | +-1.270093 O b'postag:VBP' |
| 517 | --1.197832 Air b'postag:NN' | 517 | +-1.297913 O b'-1:lemma:rpob' |
| 518 | --1.224684 O b'-1:lemma:37' | 518 | +-1.310368 O b'+1:lemma:at' |
| 519 | --1.250547 O b'+1:lemma:g/l' | 519 | +-1.315321 O b'-1:lemma:sample' |
| 520 | --1.287510 O b'+1:lemma:at' | 520 | +-1.439337 O b'-1:lemma:37' |
| 521 | --1.343885 O b'+1:lemma:+' | 521 | +-1.450525 O b'-1:lemma:ml' |
| 522 | --1.550316 Air b'+1:postag:JJ' | 522 | +-1.462231 O b'-1:postag::' |
| 523 | --1.550420 O b'+1:lemma:in' | 523 | +-1.474342 O b'-1:lemma:ompr' |
| 524 | --1.655179 O b'-1:lemma:IP' | 524 | +-1.487270 O b'lemma:wt' |
| 525 | --1.671646 Anti b'postag:NNP' | 525 | +-1.575446 Supp b'postag:JJ' |
| 526 | --1.676942 O b'lemma:37' | 526 | +-1.641300 Air b'+1:postag:JJ' |
| 527 | --1.709933 O b'lemma:rifampicin' | 527 | +-1.665695 Air b'postag:NN' |
| 528 | --1.740594 O b'-1:lemma:nsrr' | 528 | +-1.677781 O b'-1:lemma:IP' |
| 529 | --1.813332 O b'lemma:wt' | 529 | +-1.786584 O b'+1:lemma:+' |
| 530 | --1.837591 Supp b'postag:JJ' | 530 | +-1.796122 Anti b'postag:NNP' |
| 531 | --1.875538 O b'-1:lemma:ompr' | 531 | +-1.854444 O b'lemma:rifampicin' |
| 532 | --1.956251 O b'+1:lemma:hour' | 532 | +-1.946910 O b'-1:lemma:nsrr' |
| 533 | --2.104216 O b'-1:lemma:2' | 533 | +-1.979248 O b'lemma:methanol' |
| 534 | --2.173171 Phase b'postag:JJ' | 534 | +-2.077182 O b'-1:lemma:2' |
| 535 | --2.198016 O b'+1:lemma:2' | 535 | +-2.088516 O b'+1:lemma:hour' |
| 536 | --2.302343 O b'lemma:methanol' | 536 | +-2.183645 O b'+1:lemma:2' |
| 537 | --2.686054 O b'+1:lemma:1' | 537 | +-2.789864 O b'+1:lemma:1' |
| 538 | --3.664514 O b'-1:lemma:_' | 538 | +-3.511399 O b'-1:lemma::' |
| 539 | --4.711592 O b'-1:lemma::' | 539 | +-3.697135 O b'-1:lemma:_' |
| 540 | 540 | ... | ... |
CRF/reports/report_Run7_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.34336652460986966, 'c2': 0.023606219975479584} | ||
| 5 | +best CV score:0.8168890593472544 | ||
| 6 | +model size: 0.09M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.8128223676488701 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.652 0.405 0.500 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.917 1.000 0.957 22 | ||
| 14 | + Med 1.000 0.860 0.925 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.789 0.882 19 | ||
| 19 | + Air 0.793 0.742 0.767 62 | ||
| 20 | + Anti 0.900 1.000 0.947 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.933 0.783 0.851 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.887 0.691 0.777 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.885 0.758 0.813 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 6.265824 | ||
| 32 | +Agit -> Agit 5.869478 | ||
| 33 | +Temp -> Temp 5.488519 | ||
| 34 | +Med -> Med 5.144823 | ||
| 35 | +Air -> Air 4.771777 | ||
| 36 | +Supp -> Supp 4.593228 | ||
| 37 | +Anti -> Anti 4.550151 | ||
| 38 | +Gversion -> Gversion 4.348826 | ||
| 39 | +Gtype -> Gtype 4.225492 | ||
| 40 | +Technique -> Technique 3.988233 | ||
| 41 | +O -> O 3.774876 | ||
| 42 | +Phase -> Phase 3.702756 | ||
| 43 | +Gtype -> Supp 1.903024 | ||
| 44 | +pH -> pH 1.848213 | ||
| 45 | +O -> Supp 1.594685 | ||
| 46 | +O -> Technique 0.980723 | ||
| 47 | +Air -> O 0.980311 | ||
| 48 | +O -> Gtype 0.683784 | ||
| 49 | +Med -> O 0.581107 | ||
| 50 | +Substrain -> Gtype 0.524869 | ||
| 51 | +Technique -> Air 0.483765 | ||
| 52 | +OD -> Phase 0.447540 | ||
| 53 | +Supp -> O 0.422763 | ||
| 54 | +Temp -> O 0.383324 | ||
| 55 | +Gtype -> pH 0.198547 | ||
| 56 | +O -> Anti 0.179783 | ||
| 57 | +Gtype -> Air 0.052812 | ||
| 58 | +O -> Agit -0.004958 | ||
| 59 | +Technique -> pH -0.041609 | ||
| 60 | +Anti -> O -0.097695 | ||
| 61 | +Gtype -> O -0.117083 | ||
| 62 | +Technique -> O -0.151878 | ||
| 63 | +Phase -> OD -0.322970 | ||
| 64 | +O -> Air -0.457974 | ||
| 65 | +OD -> O -0.476767 | ||
| 66 | +Substrain -> O -0.946090 | ||
| 67 | +Med -> Supp -0.949223 | ||
| 68 | +Agit -> O -1.116660 | ||
| 69 | + | ||
| 70 | + | ||
| 71 | +Top unlikely transitions: | ||
| 72 | +OD -> OD 6.265824 | ||
| 73 | +Agit -> Agit 5.869478 | ||
| 74 | +Temp -> Temp 5.488519 | ||
| 75 | +Med -> Med 5.144823 | ||
| 76 | +Air -> Air 4.771777 | ||
| 77 | +Supp -> Supp 4.593228 | ||
| 78 | +Anti -> Anti 4.550151 | ||
| 79 | +Gversion -> Gversion 4.348826 | ||
| 80 | +Gtype -> Gtype 4.225492 | ||
| 81 | +Technique -> Technique 3.988233 | ||
| 82 | +O -> O 3.774876 | ||
| 83 | +Phase -> Phase 3.702756 | ||
| 84 | +Gtype -> Supp 1.903024 | ||
| 85 | +pH -> pH 1.848213 | ||
| 86 | +O -> Supp 1.594685 | ||
| 87 | +O -> Technique 0.980723 | ||
| 88 | +Air -> O 0.980311 | ||
| 89 | +O -> Gtype 0.683784 | ||
| 90 | +Med -> O 0.581107 | ||
| 91 | +Substrain -> Gtype 0.524869 | ||
| 92 | +Technique -> Air 0.483765 | ||
| 93 | +OD -> Phase 0.447540 | ||
| 94 | +Supp -> O 0.422763 | ||
| 95 | +Temp -> O 0.383324 | ||
| 96 | +Gtype -> pH 0.198547 | ||
| 97 | +O -> Anti 0.179783 | ||
| 98 | +Gtype -> Air 0.052812 | ||
| 99 | +O -> Agit -0.004958 | ||
| 100 | +Technique -> pH -0.041609 | ||
| 101 | +Anti -> O -0.097695 | ||
| 102 | +Gtype -> O -0.117083 | ||
| 103 | +Technique -> O -0.151878 | ||
| 104 | +Phase -> OD -0.322970 | ||
| 105 | +O -> Air -0.457974 | ||
| 106 | +OD -> O -0.476767 | ||
| 107 | +Substrain -> O -0.946090 | ||
| 108 | +Med -> Supp -0.949223 | ||
| 109 | +Agit -> O -1.116660 | ||
| 110 | + | ||
| 111 | + | ||
| 112 | +Top positive: | ||
| 113 | +6.357696 Air b'word:Aerobic' | ||
| 114 | +5.077540 Air b'lemma:anaerobic' | ||
| 115 | +4.552250 Anti b'-2:lemma:antibody' | ||
| 116 | +4.360948 O b'-2:lemma:_' | ||
| 117 | +4.109534 Supp b'lemma:nh4cl' | ||
| 118 | +4.096460 Technique b'word:ChIP-Seq' | ||
| 119 | +3.897866 O b'-2:lemma:flagtag' | ||
| 120 | +3.611278 Gtype b'-2:lemma:genotype/variation' | ||
| 121 | +3.568906 O b'postag:IN' | ||
| 122 | +3.460895 O b'lemma:_' | ||
| 123 | +3.460895 O b'word:_' | ||
| 124 | +3.428391 O b'lemma:1' | ||
| 125 | +3.428391 O b'word:1' | ||
| 126 | +3.423275 Technique b'lemma:rna-seq' | ||
| 127 | +3.314745 Med b'word:LB' | ||
| 128 | +3.281392 Technique b'word:ChIP-exo' | ||
| 129 | +3.278176 O b'-1:lemma:ChIP-exo' | ||
| 130 | +3.237196 O b'lemma:rpob' | ||
| 131 | +3.237196 O b'word:RpoB' | ||
| 132 | +3.225531 Supp b'lemma:nitrate' | ||
| 133 | +3.225531 Supp b'word:nitrate' | ||
| 134 | +3.161794 O b'postag::' | ||
| 135 | +3.139068 Air b'word:Anaerobic' | ||
| 136 | +3.139066 O b'+2:lemma:\xc2\xb0c' | ||
| 137 | +3.077701 Gtype b'lemma:type' | ||
| 138 | +3.077701 Gtype b'word:type' | ||
| 139 | +3.075219 Technique b'word:ChIPSeq' | ||
| 140 | +2.840391 O b'lemma:2' | ||
| 141 | +2.840391 O b'word:2' | ||
| 142 | +2.815117 Gtype b'-2:lemma:delta' | ||
| 143 | +2.722376 O b'lemma:3' | ||
| 144 | +2.722376 O b'word:3' | ||
| 145 | +2.706348 O b'word:Cra' | ||
| 146 | +2.634028 O b'+1:postag:RB' | ||
| 147 | +2.495581 Substrain b'lemma:mg1655' | ||
| 148 | +2.495581 Substrain b'word:MG1655' | ||
| 149 | +2.448736 Med b'+2:lemma:with' | ||
| 150 | +2.443674 Gtype b'-2:lemma:affyexp' | ||
| 151 | +2.381962 O b'lemma:.' | ||
| 152 | +2.381962 O b'postag:.' | ||
| 153 | +2.381962 O b'word:.' | ||
| 154 | +2.367230 Strain b'lemma:k-12' | ||
| 155 | +2.367230 Strain b'word:K-12' | ||
| 156 | +2.361973 Gtype b'lemma:wild-type' | ||
| 157 | +2.355120 Phase b'lemma:mid-log' | ||
| 158 | +2.355120 Phase b'word:mid-log' | ||
| 159 | +2.319375 Gtype b'-2:lemma:genotype' | ||
| 160 | +2.302990 Supp b'lemma:no3' | ||
| 161 | +2.302990 Supp b'word:NO3' | ||
| 162 | +2.291837 Med b'lemma:MOPS' | ||
| 163 | +2.291837 Med b'word:MOPS' | ||
| 164 | +2.228985 Technique b'lemma:ChIP-exo' | ||
| 165 | +2.205076 Supp b'-2:lemma:supplement' | ||
| 166 | +2.202918 Supp b'+1:lemma:\xc2\xb5m' | ||
| 167 | +2.202918 Supp b'+1:word:\xc2\xb5M' | ||
| 168 | +2.172606 Gtype b'+1:lemma:type' | ||
| 169 | +2.172606 Gtype b'+1:word:type' | ||
| 170 | +2.164705 Gtype b'+2:lemma:glucose' | ||
| 171 | +2.129804 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 172 | +2.129804 Gtype b'-1:word:\xe2\x88\x86' | ||
| 173 | +2.103445 Anti b'+2:lemma:antibody' | ||
| 174 | +2.089681 Air b'postag:RB' | ||
| 175 | +2.074019 Technique b'+2:lemma:ph5' | ||
| 176 | +2.072624 O b'+2:lemma:fructose' | ||
| 177 | +2.067658 OD b'lemma:od600' | ||
| 178 | +2.067658 OD b'word:OD600' | ||
| 179 | +2.038104 Supp b'-2:lemma:shake' | ||
| 180 | +2.013357 Supp b'lemma:Iron' | ||
| 181 | +2.013357 Supp b'word:Iron' | ||
| 182 | +2.013357 Supp b'+1:word:Deficient' | ||
| 183 | +2.013357 Supp b'-2:lemma:Anaerobic' | ||
| 184 | +1.980749 O b'+1:word:ChIP-Seq' | ||
| 185 | +1.962748 O b'postag:CC' | ||
| 186 | +1.930693 Supp b'lemma:pq' | ||
| 187 | +1.930693 Supp b'word:PQ' | ||
| 188 | +1.924374 O b'-1:word:Aerobic' | ||
| 189 | +1.923374 O b'word:A' | ||
| 190 | +1.922702 O b'lemma:b' | ||
| 191 | +1.922702 O b'word:B' | ||
| 192 | +1.917919 Supp b'-2:lemma:purr' | ||
| 193 | +1.903045 O b'+1:postag:NNP' | ||
| 194 | +1.888802 O b'+1:postag:VBP' | ||
| 195 | +1.886279 Gtype b'lemma:wt' | ||
| 196 | +1.882619 Phase b'-2:lemma:phase' | ||
| 197 | +1.877260 Phase b'lemma:stationary' | ||
| 198 | +1.877260 Phase b'word:stationary' | ||
| 199 | +1.875788 O b'-2:lemma:~' | ||
| 200 | +1.867119 O b'postag:DT' | ||
| 201 | +1.857025 Technique b'lemma:chipseq' | ||
| 202 | +1.833096 O b'postag:VBN' | ||
| 203 | +1.829071 Gversion b'-2:lemma:nc' | ||
| 204 | +1.818881 Gtype b'word:WT' | ||
| 205 | +1.787639 O b'lemma:culture' | ||
| 206 | +1.786961 O b'-1:lemma:tag' | ||
| 207 | +1.786604 Gtype b'postag:-RRB-' | ||
| 208 | +1.737297 Supp b'-1:word:Cra' | ||
| 209 | +1.734300 O b'-2:lemma:mg/ml' | ||
| 210 | +1.722597 O b'-2:lemma:medium' | ||
| 211 | +1.711409 Technique b'lemma:rnaseq' | ||
| 212 | +1.711409 Technique b'word:RNASeq' | ||
| 213 | +1.696030 O b'lemma:chip' | ||
| 214 | +1.694223 O b'lemma:-' | ||
| 215 | +1.694223 O b'word:-' | ||
| 216 | +1.694171 Supp b'-2:lemma:for' | ||
| 217 | +1.691174 O b'lemma:Custom' | ||
| 218 | +1.691174 O b'word:Custom' | ||
| 219 | +1.681320 O b'word:Lrp' | ||
| 220 | +1.673790 Gtype b'postag:JJ' | ||
| 221 | +1.647891 O b'isLower' | ||
| 222 | +1.643397 Gtype b'lemma:nsrr' | ||
| 223 | +1.643397 Gtype b'word:NsrR' | ||
| 224 | +1.632308 Supp b'lemma:arginine' | ||
| 225 | +1.604616 O b'lemma:a' | ||
| 226 | +1.600294 Gtype b'lemma:\xce\xb4cra' | ||
| 227 | +1.596463 Gtype b'word:\xce\x94cra' | ||
| 228 | +1.580527 Med b'+2:lemma:b2' | ||
| 229 | +1.575286 O b'-1:lemma:lb' | ||
| 230 | +1.556401 Temp b'-1:word:sample' | ||
| 231 | +1.544845 O b'+2:lemma:polyclonal' | ||
| 232 | +1.543849 Med b'isUpper' | ||
| 233 | +1.541896 Supp b'+2:lemma:rifampicin' | ||
| 234 | +1.535125 Supp b'lemma:glucose' | ||
| 235 | +1.535125 Supp b'word:glucose' | ||
| 236 | +1.524619 pH b'+1:postag:CD' | ||
| 237 | +1.521913 Supp b'-1:postag:CC' | ||
| 238 | +1.517190 O b'+2:lemma:chipseq' | ||
| 239 | +1.503740 Supp b'-2:lemma:Lrp' | ||
| 240 | +1.457179 O b'-2:lemma:co2' | ||
| 241 | +1.447917 O b'-1:lemma:anaerobic' | ||
| 242 | +1.447594 Temp b'-1:lemma:sample' | ||
| 243 | +1.439709 Gtype b'lemma:\xe2\x88\x86' | ||
| 244 | +1.439709 Gtype b'word:\xe2\x88\x86' | ||
| 245 | +1.437966 Temp b'isNumber' | ||
| 246 | +1.431128 Supp b'lemma:acetate' | ||
| 247 | +1.431128 Supp b'word:acetate' | ||
| 248 | +1.427889 Supp b'+1:lemma:2' | ||
| 249 | +1.427889 Supp b'+1:word:2' | ||
| 250 | +1.392397 Gversion b'lemma:nc' | ||
| 251 | +1.392397 Gversion b'word:NC' | ||
| 252 | +1.390556 pH b'lemma:ph5' | ||
| 253 | +1.390556 pH b'+1:lemma:.5' | ||
| 254 | +1.390556 pH b'word:pH5' | ||
| 255 | +1.390556 pH b'+1:word:.5' | ||
| 256 | +1.384470 Supp b'lemma:iptg' | ||
| 257 | +1.384470 Supp b'word:IPTG' | ||
| 258 | +1.365812 O b'-2:lemma:\xe2\x88\x86' | ||
| 259 | +1.364153 Air b'+2:postag:NNP' | ||
| 260 | +1.333446 Gtype b'+1:lemma:with' | ||
| 261 | +1.333446 Gtype b'+1:word:with' | ||
| 262 | +1.324361 Gtype b'-2:postag::' | ||
| 263 | +1.306165 O b'+2:postag:JJ' | ||
| 264 | +1.289867 Gtype b'-2:postag:DT' | ||
| 265 | +1.281577 Gversion b'lemma:chip-seq' | ||
| 266 | +1.270110 Gversion b'+2:lemma:000913' | ||
| 267 | +1.267124 Vess b'lemma:flask' | ||
| 268 | +1.267124 Vess b'-1:lemma:warm' | ||
| 269 | +1.267124 Vess b'word:flask' | ||
| 270 | +1.267124 Vess b'-1:word:warmed' | ||
| 271 | +1.267124 Vess b'-2:lemma:pre' | ||
| 272 | +1.267124 Vess b'+2:lemma:43' | ||
| 273 | +1.263332 O b'+1:postag::' | ||
| 274 | +1.249814 O b'isNumber' | ||
| 275 | +1.246752 Air b'-2:postag:CD' | ||
| 276 | +1.242966 Supp b'+1:lemma:1' | ||
| 277 | +1.242966 Supp b'+1:word:1' | ||
| 278 | +1.216506 Supp b'lemma:fructose' | ||
| 279 | +1.216506 Supp b'word:fructose' | ||
| 280 | +1.209634 Med b'lemma:media' | ||
| 281 | +1.209634 Med b'word:media' | ||
| 282 | +1.202005 O b'-1:lemma:media' | ||
| 283 | +1.202005 O b'-1:word:media' | ||
| 284 | +1.199774 Med b'+2:lemma:medium' | ||
| 285 | +1.187094 Gtype b'-1:lemma:rpob' | ||
| 286 | +1.187094 Gtype b'-1:word:RpoB' | ||
| 287 | +1.183792 Supp b'lemma:dpd' | ||
| 288 | +1.183792 Supp b'word:DPD' | ||
| 289 | +1.180639 Air b'+2:lemma:37' | ||
| 290 | +1.176560 Anti b'+1:lemma:antibody' | ||
| 291 | +1.176560 Anti b'+1:word:antibody' | ||
| 292 | +1.169611 O b'-1:word:tag' | ||
| 293 | +1.165769 Gtype b'lemma:flag-tag' | ||
| 294 | +1.165769 Gtype b'-1:lemma:c-terminal' | ||
| 295 | +1.165769 Gtype b'word:Flag-tag' | ||
| 296 | +1.165769 Gtype b'-1:word:C-terminal' | ||
| 297 | +1.164325 Agit b'-2:postag:IN' | ||
| 298 | +1.148652 O b'-2:lemma:mid-log' | ||
| 299 | +1.147844 Gtype b'postag:NN' | ||
| 300 | +1.145961 Phase b'isLower' | ||
| 301 | +1.133253 O b'-2:lemma:ChIP-Seq' | ||
| 302 | +1.129704 Temp b'-2:lemma:\xcf\x8332' | ||
| 303 | +1.125804 Med b'+1:lemma:0.4' | ||
| 304 | +1.125804 Med b'+1:word:0.4' | ||
| 305 | +1.122954 Temp b'isUpper' | ||
| 306 | +1.117074 Temp b'lemma:43' | ||
| 307 | +1.117074 Temp b'word:43' | ||
| 308 | +1.113876 Med b'+1:postag:JJ' | ||
| 309 | +1.094450 Air b'-1:lemma:ChIP-Seq' | ||
| 310 | +1.094450 Air b'-1:word:ChIP-Seq' | ||
| 311 | +1.088461 Air b'-2:lemma:IP' | ||
| 312 | +1.083576 Supp b'+1:lemma:_' | ||
| 313 | + | ||
| 314 | + | ||
| 315 | +Top negative: | ||
| 316 | +-0.031330 O b'-1:word:~' | ||
| 317 | +-0.033235 Air b'+2:lemma:and' | ||
| 318 | +-0.033826 Air b'-2:lemma:n2' | ||
| 319 | +-0.033868 Temp b'+1:lemma:to' | ||
| 320 | +-0.033868 Temp b'+1:postag:TO' | ||
| 321 | +-0.033868 Temp b'+1:word:to' | ||
| 322 | +-0.034239 O b'-2:lemma:-lrb-' | ||
| 323 | +-0.034758 OD b'+2:postag:CD' | ||
| 324 | +-0.034948 O b'+2:lemma:reference' | ||
| 325 | +-0.046088 Air b'-1:postag:RB' | ||
| 326 | +-0.047770 Temp b'+2:lemma:to' | ||
| 327 | +-0.047770 Temp b'+2:postag:TO' | ||
| 328 | +-0.048579 O b'-1:lemma:rpob' | ||
| 329 | +-0.048579 O b'-1:word:RpoB' | ||
| 330 | +-0.051599 Supp b'+1:lemma:-rrb-' | ||
| 331 | +-0.051599 Supp b'+1:word:-RRB-' | ||
| 332 | +-0.055182 O b'+2:lemma:anaerobically' | ||
| 333 | +-0.055535 Air b'-1:lemma:,' | ||
| 334 | +-0.055535 Air b'-1:postag:,' | ||
| 335 | +-0.055535 Air b'-1:word:,' | ||
| 336 | +-0.056326 OD b'+1:postag:CD' | ||
| 337 | +-0.059220 O b'+1:word:cells' | ||
| 338 | +-0.061552 O b'+1:word:ChIP-exo' | ||
| 339 | +-0.064402 O b'lemma:fecl2' | ||
| 340 | +-0.064402 O b'word:FeCl2' | ||
| 341 | +-0.066340 Supp b'+1:postag:-RRB-' | ||
| 342 | +-0.068654 Air b'-2:postag:CC' | ||
| 343 | +-0.073218 Temp b'isLower' | ||
| 344 | +-0.075683 O b'-2:lemma:%' | ||
| 345 | +-0.080063 Supp b'postag:CC' | ||
| 346 | +-0.081265 O b'-1:lemma:the' | ||
| 347 | +-0.081974 Air b'postag:CD' | ||
| 348 | +-0.082604 O b'-2:lemma:anaerobically' | ||
| 349 | +-0.084445 Gtype b'-2:postag:IN' | ||
| 350 | +-0.085948 O b'lemma:grow' | ||
| 351 | +-0.086016 O b'lemma:20' | ||
| 352 | +-0.086016 O b'word:20' | ||
| 353 | +-0.087663 OD b'+2:postag:-LRB-' | ||
| 354 | +-0.088450 pH b'postag:NN' | ||
| 355 | +-0.089437 O b'-1:word:the' | ||
| 356 | +-0.090217 O b'+1:lemma:mg1655' | ||
| 357 | +-0.090217 O b'+1:word:MG1655' | ||
| 358 | +-0.090497 O b'+1:lemma:300' | ||
| 359 | +-0.090497 O b'+1:word:300' | ||
| 360 | +-0.091900 O b'+1:lemma:fecl2' | ||
| 361 | +-0.091900 O b'+1:word:FeCl2' | ||
| 362 | +-0.091900 O b'-2:lemma:0.1' | ||
| 363 | +-0.095208 Air b'+2:postag:IN' | ||
| 364 | +-0.097435 O b'+1:postag:-RRB-' | ||
| 365 | +-0.102615 Gtype b'+2:lemma:,' | ||
| 366 | +-0.102615 Gtype b'+2:postag:,' | ||
| 367 | +-0.104429 O b'-1:lemma:iptg' | ||
| 368 | +-0.104429 O b'-1:word:IPTG' | ||
| 369 | +-0.104998 O b'+1:lemma:.' | ||
| 370 | +-0.104998 O b'+1:postag:.' | ||
| 371 | +-0.104998 O b'+1:word:.' | ||
| 372 | +-0.107677 O b'lemma:k-12' | ||
| 373 | +-0.107677 O b'word:K-12' | ||
| 374 | +-0.113262 O b'-2:lemma:cell' | ||
| 375 | +-0.116418 Supp b'-2:postag:IN' | ||
| 376 | +-0.122812 O b'+2:lemma:-rrb-' | ||
| 377 | +-0.124242 Supp b'-1:postag:NNP' | ||
| 378 | +-0.126377 Anti b'+1:lemma:anti-fur' | ||
| 379 | +-0.126377 Anti b'+1:word:anti-Fur' | ||
| 380 | +-0.154570 O b'-1:postag:-LRB-' | ||
| 381 | +-0.156192 O b'-2:postag:VBG' | ||
| 382 | +-0.158047 O b'-2:postag:-LRB-' | ||
| 383 | +-0.163530 Phase b'-2:postag:NN' | ||
| 384 | +-0.165038 O b'-1:postag:VBN' | ||
| 385 | +-0.172203 O b'-2:lemma:to' | ||
| 386 | +-0.172203 O b'-2:postag:TO' | ||
| 387 | +-0.175281 O b'+2:lemma:b' | ||
| 388 | +-0.177331 O b'-2:lemma::' | ||
| 389 | +-0.178997 O b'-1:lemma:37' | ||
| 390 | +-0.178997 O b'-1:word:37' | ||
| 391 | +-0.180982 Supp b'isUpper' | ||
| 392 | +-0.196878 O b'lemma:dissolve' | ||
| 393 | +-0.196878 O b'word:dissolved' | ||
| 394 | +-0.196878 O b'+2:lemma:methanol' | ||
| 395 | +-0.207471 Gtype b'-1:postag:NN' | ||
| 396 | +-0.209158 Air b'isLower' | ||
| 397 | +-0.211564 O b'+2:lemma:mg1655' | ||
| 398 | +-0.216055 O b'+1:lemma:phase' | ||
| 399 | +-0.216055 O b'+1:word:phase' | ||
| 400 | +-0.218804 Anti b'+2:lemma:polyclonal' | ||
| 401 | +-0.225020 Temp b'-2:postag:NN' | ||
| 402 | +-0.226672 O b'+1:lemma:g/l' | ||
| 403 | +-0.226672 O b'+1:word:g/L' | ||
| 404 | +-0.236399 O b'-2:lemma:minimal' | ||
| 405 | +-0.242119 Technique b'isNumber' | ||
| 406 | +-0.243045 Air b'+1:postag:JJ' | ||
| 407 | +-0.244256 Supp b'-2:postag:NN' | ||
| 408 | +-0.247335 O b'lemma:2h' | ||
| 409 | +-0.247335 O b'-1:lemma:additional' | ||
| 410 | +-0.247335 O b'word:2h' | ||
| 411 | +-0.247335 O b'-1:word:additional' | ||
| 412 | +-0.249741 Air b'-1:postag:JJ' | ||
| 413 | +-0.253398 O b'+1:word:hours' | ||
| 414 | +-0.261331 O b'-2:lemma:50' | ||
| 415 | +-0.267379 O b'+1:lemma:supplement' | ||
| 416 | +-0.267379 O b'+1:word:supplemented' | ||
| 417 | +-0.268909 O b'word:WT' | ||
| 418 | +-0.273891 O b'+2:postag:RB' | ||
| 419 | +-0.274312 O b'lemma:anaerobically' | ||
| 420 | +-0.274312 O b'word:anaerobically' | ||
| 421 | +-0.295438 Phase b'isUpper' | ||
| 422 | +-0.297401 O b'+2:lemma:+' | ||
| 423 | +-0.299315 O b'-1:lemma:co2' | ||
| 424 | +-0.299315 O b'-1:word:CO2' | ||
| 425 | +-0.310768 O b'-1:lemma:IP' | ||
| 426 | +-0.310768 O b'-1:word:IP' | ||
| 427 | +-0.319418 Anti b'+2:postag:JJ' | ||
| 428 | +-0.325955 Supp b'+2:lemma:-rrb-' | ||
| 429 | +-0.334787 Med b'+1:postag:NN' | ||
| 430 | +-0.341329 O b'lemma:37' | ||
| 431 | +-0.341329 O b'word:37' | ||
| 432 | +-0.342615 O b'-1:lemma:dissolve' | ||
| 433 | +-0.342615 O b'+1:lemma:methanol' | ||
| 434 | +-0.342615 O b'-1:word:dissolved' | ||
| 435 | +-0.342615 O b'+1:word:methanol' | ||
| 436 | +-0.346343 O b'+1:postag:NNS' | ||
| 437 | +-0.346399 Agit b'isUpper' | ||
| 438 | +-0.361710 O b'lemma:methanol' | ||
| 439 | +-0.361710 O b'word:methanol' | ||
| 440 | +-0.361710 O b'-2:lemma:dissolve' | ||
| 441 | +-0.365689 O b'+2:postag:-RRB-' | ||
| 442 | +-0.371703 O b'lemma:media' | ||
| 443 | +-0.371703 O b'word:media' | ||
| 444 | +-0.375913 Med b'+1:postag:IN' | ||
| 445 | +-0.375941 O b'-2:lemma:supplement' | ||
| 446 | +-0.389209 O b'-1:lemma:nsrr' | ||
| 447 | +-0.389209 O b'-1:word:NsrR' | ||
| 448 | +-0.391437 Phase b'postag:JJ' | ||
| 449 | +-0.407412 O b'-2:lemma:IP' | ||
| 450 | +-0.420031 Supp b'+2:postag:NNS' | ||
| 451 | +-0.428280 O b'lemma:glucose' | ||
| 452 | +-0.428280 O b'word:glucose' | ||
| 453 | +-0.431094 O b'-2:postag:RB' | ||
| 454 | +-0.438906 Supp b'+2:postag:-RRB-' | ||
| 455 | +-0.441532 O b'lemma:wt' | ||
| 456 | +-0.462990 OD b'lemma:-lrb-' | ||
| 457 | +-0.462990 OD b'word:-LRB-' | ||
| 458 | +-0.468593 O b'-2:lemma:a' | ||
| 459 | +-0.475940 O b'+1:postag:VBG' | ||
| 460 | +-0.483738 Gtype b'isUpper' | ||
| 461 | +-0.485302 OD b'-2:postag:JJ' | ||
| 462 | +-0.500326 O b'+2:lemma:medium' | ||
| 463 | +-0.515103 O b'-2:postag:DT' | ||
| 464 | +-0.547995 O b'+1:lemma:in' | ||
| 465 | +-0.547995 O b'+1:word:in' | ||
| 466 | +-0.556608 O b'lemma:rifampicin' | ||
| 467 | +-0.556608 O b'word:rifampicin' | ||
| 468 | +-0.582146 OD b'isNumber' | ||
| 469 | +-0.583100 O b'-1:postag:IN' | ||
| 470 | +-0.592764 O b'lemma:phase' | ||
| 471 | +-0.592764 O b'word:phase' | ||
| 472 | +-0.595239 O b'lemma:mid-log' | ||
| 473 | +-0.595239 O b'word:mid-log' | ||
| 474 | +-0.605400 O b'lemma:of' | ||
| 475 | +-0.605400 O b'word:of' | ||
| 476 | +-0.607669 O b'-1:lemma:grow' | ||
| 477 | +-0.614149 Temp b'postag:NN' | ||
| 478 | +-0.632028 Supp b'+2:lemma:2' | ||
| 479 | +-0.641055 Supp b'-2:postag:JJ' | ||
| 480 | +-0.646532 OD b'+1:postag:NN' | ||
| 481 | +-0.649552 O b'-1:lemma:sample' | ||
| 482 | +-0.673065 O b'-2:lemma:rpob' | ||
| 483 | +-0.685360 Supp b'+2:postag:NN' | ||
| 484 | +-0.718536 Gversion b'isLower' | ||
| 485 | +-0.726489 O b'+2:lemma:rifampicin' | ||
| 486 | +-0.728168 Med b'-2:postag:VBN' | ||
| 487 | +-0.728191 O b'-1:postag::' | ||
| 488 | +-0.732227 O b'-1:lemma:2' | ||
| 489 | +-0.732227 O b'-1:word:2' | ||
| 490 | +-0.751907 Technique b'isLower' | ||
| 491 | +-0.756257 O b'+1:postag:IN' | ||
| 492 | +-0.788494 O b'postag:RB' | ||
| 493 | +-0.793328 O b'+1:lemma:at' | ||
| 494 | +-0.793328 O b'+1:word:at' | ||
| 495 | +-0.803395 Med b'-1:postag:NN' | ||
| 496 | +-0.840583 O b'-1:postag:VBG' | ||
| 497 | +-0.849074 O b'word:cells' | ||
| 498 | +-0.860641 O b'+2:lemma:mid-log' | ||
| 499 | +-0.885639 Gtype b'isLower' | ||
| 500 | +-0.907497 OD b'postag:-LRB-' | ||
| 501 | +-0.937466 O b'-2:lemma:rifampicin' | ||
| 502 | +-0.975829 Gtype b'isNumber' | ||
| 503 | +-1.088007 O b'-2:lemma:phase' | ||
| 504 | +-1.095557 Air b'postag:NN' | ||
| 505 | +-1.113735 O b'+1:lemma:2' | ||
| 506 | +-1.113735 O b'+1:word:2' | ||
| 507 | +-1.264849 Anti b'postag:NNP' | ||
| 508 | +-1.412293 O b'+1:lemma:1' | ||
| 509 | +-1.412293 O b'+1:word:1' | ||
| 510 | +-1.493591 Supp b'postag:JJ' | ||
| 511 | +-1.991234 O b'-1:lemma::' | ||
| 512 | +-1.991234 O b'-1:word::' | ||
| 513 | +-2.151194 Supp b'+2:postag:CD' | ||
| 514 | +-2.386492 O b'-1:lemma:_' | ||
| 515 | +-2.386492 O b'-1:word:_' | ||
| 516 | + |
CRF/reports/report_Run7_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.18334620784152844, 'c2': 0.008065728975440238} | ||
| 5 | +best CV score:0.7992328667891142 | ||
| 6 | +model size: 0.06M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7861345162985679 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.800 0.842 0.821 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.939 0.742 0.829 62 | ||
| 20 | + Anti 0.571 0.444 0.500 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.866 0.792 0.828 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.802 0.654 0.721 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.863 0.738 0.786 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.441317 | ||
| 32 | +OD -> OD 6.198142 | ||
| 33 | +Temp -> Temp 5.464759 | ||
| 34 | +Anti -> Anti 5.428002 | ||
| 35 | +Med -> Med 5.387458 | ||
| 36 | +Air -> Air 5.209961 | ||
| 37 | +Phase -> Phase 4.695053 | ||
| 38 | +O -> O 4.548631 | ||
| 39 | +Gversion -> Gversion 4.547965 | ||
| 40 | +Gtype -> Gtype 4.475060 | ||
| 41 | +Supp -> Supp 4.114913 | ||
| 42 | +Technique -> Technique 4.082736 | ||
| 43 | +pH -> pH 1.944903 | ||
| 44 | +O -> Supp 1.807640 | ||
| 45 | +Air -> O 1.622322 | ||
| 46 | +Gtype -> Supp 1.534817 | ||
| 47 | +Substrain -> Gtype 1.344174 | ||
| 48 | +O -> Technique 1.336522 | ||
| 49 | +O -> Gtype 1.245629 | ||
| 50 | +O -> Anti 0.936139 | ||
| 51 | +Technique -> Air 0.714948 | ||
| 52 | +O -> Temp 0.637848 | ||
| 53 | +Med -> O 0.459165 | ||
| 54 | +O -> Gversion 0.360936 | ||
| 55 | +Temp -> O 0.204109 | ||
| 56 | +OD -> Phase 0.159046 | ||
| 57 | +O -> Med 0.104640 | ||
| 58 | +Supp -> O 0.075713 | ||
| 59 | +Phase -> O 0.056846 | ||
| 60 | +Gtype -> pH 0.037916 | ||
| 61 | +O -> Strain 0.016408 | ||
| 62 | +O -> OD -0.000411 | ||
| 63 | +Technique -> O -0.074489 | ||
| 64 | +OD -> Air -0.121140 | ||
| 65 | +Technique -> Gtype -0.135273 | ||
| 66 | +Gtype -> Med -0.165067 | ||
| 67 | +Supp -> Air -0.232833 | ||
| 68 | +Technique -> OD -0.233483 | ||
| 69 | +Gtype -> O -0.424837 | ||
| 70 | +Gtype -> Anti -0.430777 | ||
| 71 | +OD -> O -0.542516 | ||
| 72 | +Supp -> Med -0.717785 | ||
| 73 | +O -> Air -0.775058 | ||
| 74 | +Agit -> O -0.784243 | ||
| 75 | +Gtype -> OD -0.845217 | ||
| 76 | +Substrain -> O -1.160866 | ||
| 77 | +Med -> Supp -1.461608 | ||
| 78 | +Phase -> OD -1.657661 | ||
| 79 | + | ||
| 80 | + | ||
| 81 | +Top unlikely transitions: | ||
| 82 | +Agit -> Agit 6.441317 | ||
| 83 | +OD -> OD 6.198142 | ||
| 84 | +Temp -> Temp 5.464759 | ||
| 85 | +Anti -> Anti 5.428002 | ||
| 86 | +Med -> Med 5.387458 | ||
| 87 | +Air -> Air 5.209961 | ||
| 88 | +Phase -> Phase 4.695053 | ||
| 89 | +O -> O 4.548631 | ||
| 90 | +Gversion -> Gversion 4.547965 | ||
| 91 | +Gtype -> Gtype 4.475060 | ||
| 92 | +Supp -> Supp 4.114913 | ||
| 93 | +Technique -> Technique 4.082736 | ||
| 94 | +pH -> pH 1.944903 | ||
| 95 | +O -> Supp 1.807640 | ||
| 96 | +Air -> O 1.622322 | ||
| 97 | +Gtype -> Supp 1.534817 | ||
| 98 | +Substrain -> Gtype 1.344174 | ||
| 99 | +O -> Technique 1.336522 | ||
| 100 | +O -> Gtype 1.245629 | ||
| 101 | +O -> Anti 0.936139 | ||
| 102 | +Technique -> Air 0.714948 | ||
| 103 | +O -> Temp 0.637848 | ||
| 104 | +Med -> O 0.459165 | ||
| 105 | +O -> Gversion 0.360936 | ||
| 106 | +Temp -> O 0.204109 | ||
| 107 | +OD -> Phase 0.159046 | ||
| 108 | +O -> Med 0.104640 | ||
| 109 | +Supp -> O 0.075713 | ||
| 110 | +Phase -> O 0.056846 | ||
| 111 | +Gtype -> pH 0.037916 | ||
| 112 | +O -> Strain 0.016408 | ||
| 113 | +O -> OD -0.000411 | ||
| 114 | +Technique -> O -0.074489 | ||
| 115 | +OD -> Air -0.121140 | ||
| 116 | +Technique -> Gtype -0.135273 | ||
| 117 | +Gtype -> Med -0.165067 | ||
| 118 | +Supp -> Air -0.232833 | ||
| 119 | +Technique -> OD -0.233483 | ||
| 120 | +Gtype -> O -0.424837 | ||
| 121 | +Gtype -> Anti -0.430777 | ||
| 122 | +OD -> O -0.542516 | ||
| 123 | +Supp -> Med -0.717785 | ||
| 124 | +O -> Air -0.775058 | ||
| 125 | +Agit -> O -0.784243 | ||
| 126 | +Gtype -> OD -0.845217 | ||
| 127 | +Substrain -> O -1.160866 | ||
| 128 | +Med -> Supp -1.461608 | ||
| 129 | +Phase -> OD -1.657661 | ||
| 130 | + | ||
| 131 | + | ||
| 132 | +Top positive: | ||
| 133 | +8.540612 Supp b'lemma:Iron' | ||
| 134 | +8.329515 O b'lemma:_' | ||
| 135 | +7.954212 Air b'lemma:anaerobic' | ||
| 136 | +7.558303 Air b'lemma:aerobic' | ||
| 137 | +7.425659 Supp b'lemma:nitrate' | ||
| 138 | +7.188063 O b'lemma:1' | ||
| 139 | +7.151953 Technique b'lemma:ChIP-exo' | ||
| 140 | +6.868721 Phase b'lemma:stationary' | ||
| 141 | +6.736734 Strain b'lemma:k-12' | ||
| 142 | +6.164335 O b'lemma:rpob' | ||
| 143 | +6.164166 Air b'-1:lemma:ChIP-Seq' | ||
| 144 | +6.145220 Phase b'lemma:mid-log' | ||
| 145 | +6.083537 O b'lemma:2' | ||
| 146 | +6.046633 Technique b'lemma:chipseq' | ||
| 147 | +5.843991 Substrain b'lemma:mg1655' | ||
| 148 | +5.625605 Gversion b'lemma:asm584v2' | ||
| 149 | +5.595675 Supp b'lemma:pq' | ||
| 150 | +5.579787 O b'lemma:3' | ||
| 151 | +5.528331 Gtype b'lemma:type' | ||
| 152 | +5.458452 O b'-1:lemma:ChIP-exo' | ||
| 153 | +5.389356 Med b'lemma:MOPS' | ||
| 154 | +5.261442 O b'-1:lemma:tag' | ||
| 155 | +5.221290 Gtype b'lemma:\xce\xb4cra' | ||
| 156 | +5.207575 O b'lemma:\xcf\x8332' | ||
| 157 | +5.185393 OD b'lemma:od600' | ||
| 158 | +5.129342 O b'lemma:Custom' | ||
| 159 | +5.077322 O b'lemma:rep1' | ||
| 160 | +5.062790 Air b'lemma:Aerobic' | ||
| 161 | +5.039230 Gtype b'lemma:flag-tag' | ||
| 162 | +5.039230 Gtype b'-1:lemma:c-terminal' | ||
| 163 | +4.960492 O b'lemma:b' | ||
| 164 | +4.944484 Med b'lemma:LB' | ||
| 165 | +4.895657 O b'lemma:rep2' | ||
| 166 | +4.895123 Gversion b'lemma:nc' | ||
| 167 | +4.892927 O b'postag:IN' | ||
| 168 | +4.878845 Supp b'+1:lemma:\xc2\xb5m' | ||
| 169 | +4.777473 Supp b'lemma:nh4cl' | ||
| 170 | +4.733229 O b'lemma:rep3' | ||
| 171 | +4.700693 Technique b'lemma:ChIP-Seq' | ||
| 172 | +4.522919 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 173 | +4.506447 O b'lemma:a' | ||
| 174 | +4.486239 Gtype b'lemma:delta-arca' | ||
| 175 | +4.484173 Gtype b'+1:lemma:type' | ||
| 176 | +4.469270 Temp b'-1:lemma:sample' | ||
| 177 | +4.466501 Gtype b'lemma:arca8myc' | ||
| 178 | +4.444728 O b'lemma:Cra' | ||
| 179 | +4.370578 Supp b'lemma:glucose' | ||
| 180 | +4.315203 Technique b'lemma:rna-seq' | ||
| 181 | +4.281493 O b'postag::' | ||
| 182 | +4.229592 Gtype b'lemma:wt' | ||
| 183 | +4.150659 Supp b'lemma:Fe' | ||
| 184 | +4.147004 OD b'lemma:od450' | ||
| 185 | +4.134772 O b'-1:lemma:Aerobic' | ||
| 186 | +4.128050 Gtype b'lemma:fnr8myc' | ||
| 187 | +4.061029 Med b'lemma:lb' | ||
| 188 | +3.983457 Gversion b'-1:lemma:nc' | ||
| 189 | +3.979082 Anti b'lemma:none' | ||
| 190 | +3.866545 Gtype b'lemma:delta-fnr' | ||
| 191 | +3.851958 Supp b'lemma:acetate' | ||
| 192 | +3.765754 Supp b'lemma:dpd' | ||
| 193 | +3.751043 Gtype b'lemma:\xe2\x88\x86' | ||
| 194 | +3.745952 Technique b'lemma:chip-seq' | ||
| 195 | +3.717926 Supp b'lemma:no3' | ||
| 196 | +3.687851 Supp b'lemma:arginine' | ||
| 197 | +3.686242 Anti b'lemma:seqa' | ||
| 198 | +3.685360 O b'lemma:.' | ||
| 199 | +3.685360 O b'postag:.' | ||
| 200 | +3.654301 O b'+1:lemma:od600' | ||
| 201 | +3.652925 Technique b'lemma:rnaseq' | ||
| 202 | +3.626342 Gtype b'lemma:\xce\xb4fur' | ||
| 203 | +3.609455 Gtype b'lemma:nsrr' | ||
| 204 | +3.595076 O b'-1:lemma:0.3-0.35' | ||
| 205 | +3.582662 O b'lemma:-' | ||
| 206 | +3.473034 Supp b'lemma:rifampicin' | ||
| 207 | +3.422494 Gtype b'lemma:wild-type' | ||
| 208 | +3.383395 Supp b'lemma:fructose' | ||
| 209 | +3.373092 O b'+1:postag:RB' | ||
| 210 | +3.370884 Vess b'lemma:flask' | ||
| 211 | +3.370884 Vess b'-1:lemma:warm' | ||
| 212 | +3.350883 Med b'+1:lemma:0.4' | ||
| 213 | +3.305547 O b'-1:lemma:type' | ||
| 214 | +3.282833 Anti b'+1:lemma:antibody' | ||
| 215 | +3.274554 O b'lemma:CEL' | ||
| 216 | +3.202139 Gtype b'lemma:\xce\xb4ompr' | ||
| 217 | +3.201589 pH b'lemma:ph5' | ||
| 218 | +3.201589 pH b'+1:lemma:.5' | ||
| 219 | +3.179454 OD b'+1:lemma:stationary' | ||
| 220 | +3.176547 Strain b'+1:lemma:substr' | ||
| 221 | +3.170822 O b'-1:lemma:glucose' | ||
| 222 | +3.142788 Technique b'+1:lemma:chip-exo' | ||
| 223 | +3.131035 Med b'lemma:m63' | ||
| 224 | +3.104780 Gversion b'lemma:chip-seq' | ||
| 225 | +3.102061 O b'lemma:chip' | ||
| 226 | +3.089303 Med b'+1:lemma:minimal' | ||
| 227 | +3.068476 O b'-1:lemma:0.3' | ||
| 228 | +3.053453 O b'-1:lemma:anaerobic' | ||
| 229 | +2.941730 Gtype b'+1:lemma:with' | ||
| 230 | +2.941090 Temp b'-1:lemma:\xcf\x8332' | ||
| 231 | +2.924228 O b'lemma:or' | ||
| 232 | +2.920487 Gversion b'lemma:u00096' | ||
| 233 | +2.920487 Gversion b'+1:lemma:.2' | ||
| 234 | +2.919801 Anti b'lemma:anti-myc' | ||
| 235 | +2.909988 Gtype b'+1:lemma:pq' | ||
| 236 | +2.906926 O b'postag:VBN' | ||
| 237 | +2.903384 Air b'lemma:anaerobically' | ||
| 238 | +2.892016 Technique b'-1:lemma:IP' | ||
| 239 | +2.855009 Temp b'-1:lemma:37' | ||
| 240 | +2.841195 Gtype b'-1:lemma:ptac' | ||
| 241 | +2.840168 Gtype b'+1:lemma:ph5' | ||
| 242 | +2.824282 O b'lemma:with' | ||
| 243 | +2.811989 Supp b'-1:lemma:Cra' | ||
| 244 | +2.803863 Supp b'+1:lemma:1' | ||
| 245 | +2.775638 Gtype b'-1:lemma:rpob' | ||
| 246 | +2.742550 Gversion b'lemma:.2' | ||
| 247 | +2.742550 Gversion b'-1:lemma:u00096' | ||
| 248 | +2.725585 Supp b'lemma:nacl' | ||
| 249 | +2.718890 O b'postag:CC' | ||
| 250 | +2.663906 Med b'lemma:media' | ||
| 251 | +2.648781 Supp b'+1:lemma:2' | ||
| 252 | +2.634231 O b'+1:postag:NNP' | ||
| 253 | +2.619387 Anti b'lemma:anti-rpos' | ||
| 254 | +2.617733 Med b'-1:lemma:ml' | ||
| 255 | +2.607952 O b'lemma:s' | ||
| 256 | +2.604146 Med b'+1:lemma:2.0' | ||
| 257 | +2.596931 Supp b'lemma:iptg' | ||
| 258 | +2.582684 O b'lemma:oxyr' | ||
| 259 | +2.582365 Supp b'-1:lemma:+' | ||
| 260 | +2.553826 Technique b'-1:lemma:chip-exo' | ||
| 261 | +2.553515 Temp b'-1:lemma:43' | ||
| 262 | +2.539094 Gtype b'lemma:pk4854' | ||
| 263 | +2.536990 Gversion b'lemma:000913' | ||
| 264 | +2.536605 O b'postag:DT' | ||
| 265 | +2.518305 O b'+1:lemma:chip-seq' | ||
| 266 | +2.477235 Supp b'-1:lemma:\xc2\xb5m' | ||
| 267 | +2.471748 Gtype b'+1:lemma:flagtag' | ||
| 268 | +2.466305 O b'+1:lemma:pq' | ||
| 269 | +2.452553 Supp b'+1:lemma:_' | ||
| 270 | +2.440883 O b'-1:lemma:lb' | ||
| 271 | +2.436674 Gtype b'lemma:\xce\xb4soxs' | ||
| 272 | +2.430228 pH b'lemma:.5' | ||
| 273 | +2.430228 pH b'-1:lemma:ph5' | ||
| 274 | +2.426250 O b'-1:lemma:l1' | ||
| 275 | +2.384757 Temp b'lemma:43' | ||
| 276 | +2.377779 O b'lemma:for' | ||
| 277 | +2.359688 Temp b'lemma:\xc2\xb0c' | ||
| 278 | +2.350893 O b'postag:VBG' | ||
| 279 | +2.345463 Supp b'lemma:Leu' | ||
| 280 | +2.342569 Gtype b'lemma:ptac' | ||
| 281 | +2.329995 Med b'lemma:L' | ||
| 282 | +2.329995 Med b'+1:lemma:broth' | ||
| 283 | +2.326782 Air b'postag:RB' | ||
| 284 | +2.308974 O b'lemma:Lrp' | ||
| 285 | +2.261997 O b'-1:lemma:stpa' | ||
| 286 | +2.261829 O b'lemma:affyexp' | ||
| 287 | +2.235812 OD b'-1:lemma:~' | ||
| 288 | +2.218246 Med b'lemma:glucose' | ||
| 289 | +2.195328 Gtype b'lemma:deltaseqa' | ||
| 290 | +2.195328 Gtype b'-1:lemma:old' | ||
| 291 | +2.183473 Air b'-1:lemma:-' | ||
| 292 | +2.179368 O b'+1:lemma:sparging' | ||
| 293 | +2.167113 O b'lemma:ompr' | ||
| 294 | +2.162481 Gtype b'-1:lemma:nsrr' | ||
| 295 | +2.144923 O b'lemma:chip-arca' | ||
| 296 | +2.136602 Phase b'+1:lemma:for' | ||
| 297 | +2.135598 Supp b'+1:lemma:hour' | ||
| 298 | +2.135317 Med b'+1:lemma:supplement' | ||
| 299 | +2.126541 Gtype b'+1:lemma:_' | ||
| 300 | +2.123397 O b'-1:lemma:media' | ||
| 301 | +2.105149 O b'+1:lemma:o.d.' | ||
| 302 | +2.089279 Phase b'-1:lemma:until' | ||
| 303 | +2.080166 Supp b'lemma:20' | ||
| 304 | +2.074063 O b'lemma:Fur' | ||
| 305 | +2.064834 Technique b'-1:lemma:input' | ||
| 306 | +2.043986 Gtype b'-1:lemma:phtpg' | ||
| 307 | +2.037910 Supp b'+1:lemma:Deficient' | ||
| 308 | +2.037801 Supp b'-1:lemma:with' | ||
| 309 | +2.030413 Med b'+1:lemma:g/l' | ||
| 310 | +2.023253 O b'-1:lemma:\xc2\xb0c' | ||
| 311 | +2.015889 O b'lemma:culture' | ||
| 312 | +2.012914 Supp b'lemma:Adenine' | ||
| 313 | +1.961151 O b'lemma:condition' | ||
| 314 | +1.959484 OD b'lemma:0.3' | ||
| 315 | +1.954444 O b'lemma:at' | ||
| 316 | +1.926198 Gtype b'lemma:WT' | ||
| 317 | +1.917991 Med b'+1:lemma:+' | ||
| 318 | +1.914469 Technique b'+1:lemma:rna-seq' | ||
| 319 | +1.908781 O b'+1:lemma:mid-log' | ||
| 320 | +1.905871 Supp b'+1:lemma:and' | ||
| 321 | +1.900742 Med b'-1:lemma:glucose' | ||
| 322 | +1.887953 O b'lemma:soxs' | ||
| 323 | +1.887953 O b'lemma:soxr' | ||
| 324 | +1.887594 OD b'+1:lemma:phase' | ||
| 325 | +1.885281 O b'lemma:purr' | ||
| 326 | +1.881926 O b'lemma:argr' | ||
| 327 | +1.870206 Supp b'lemma:methanol' | ||
| 328 | +1.855988 Air b'lemma:Anaerobic' | ||
| 329 | +1.848701 Temp b'lemma:37' | ||
| 330 | +1.821308 OD b'-1:lemma:about' | ||
| 331 | +1.790114 Vess b'-1:postag:VBN' | ||
| 332 | +1.778495 Substrain b'+1:lemma:phtpg' | ||
| 333 | + | ||
| 334 | + | ||
| 335 | +Top negative: | ||
| 336 | +0.008475 O b'+1:lemma:source' | ||
| 337 | +0.008182 Supp b'-1:postag:VBN' | ||
| 338 | +0.007577 OD b'lemma:0.3-0.35' | ||
| 339 | +0.006822 O b'-1:lemma:escherichia' | ||
| 340 | +0.006285 Gtype b'+1:lemma:ryhb' | ||
| 341 | +0.006132 O b'lemma:250' | ||
| 342 | +0.006049 Gtype b'lemma:-rcb-' | ||
| 343 | +0.005285 Supp b'-1:postag:NN' | ||
| 344 | +0.004330 Air b'-1:postag:RB' | ||
| 345 | +0.003915 O b'-1:lemma:total' | ||
| 346 | +0.003749 O b'+1:lemma:total' | ||
| 347 | +0.003385 OD b'-1:lemma:coli' | ||
| 348 | +0.003150 Med b'+1:lemma:,' | ||
| 349 | +0.003150 Med b'+1:postag:,' | ||
| 350 | +0.002999 Supp b'-1:lemma:1g/l' | ||
| 351 | +0.002933 Air b'-1:lemma:,' | ||
| 352 | +0.002933 Air b'-1:postag:,' | ||
| 353 | +0.002755 Gtype b'+1:postag:CD' | ||
| 354 | +0.002753 O b'lemma:fructose' | ||
| 355 | +0.002509 O b'lemma:fresh' | ||
| 356 | +0.002233 O b'-1:lemma:no3' | ||
| 357 | +0.001827 O b'-1:lemma:95' | ||
| 358 | +0.001712 Gtype b'+1:lemma:chip' | ||
| 359 | +0.001566 Phase b'+1:postag:RB' | ||
| 360 | +0.001444 O b'-1:lemma:l2' | ||
| 361 | +0.001388 O b'-1:postag:DT' | ||
| 362 | +0.001213 Phase b'-1:postag:IN' | ||
| 363 | +0.001197 Phase b'+1:lemma:aerobically' | ||
| 364 | +0.000889 O b'lemma:contain' | ||
| 365 | +0.000863 Gversion b'-1:postag::' | ||
| 366 | +0.000854 Temp b'-1:postag:NN' | ||
| 367 | +0.000693 O b'lemma:total' | ||
| 368 | +0.000497 Gtype b'lemma:input' | ||
| 369 | +0.000476 O b'+1:lemma:wash' | ||
| 370 | +0.000274 Agit b'+1:postag:NN' | ||
| 371 | +0.000249 Temp b'-1:postag:NNS' | ||
| 372 | +0.000240 O b'lemma:minute' | ||
| 373 | +0.000192 O b'lemma:w0002' | ||
| 374 | +0.000188 Supp b'+1:postag:JJ' | ||
| 375 | +0.000170 O b'lemma:95' | ||
| 376 | +0.000154 O b'-1:postag:VBD' | ||
| 377 | +0.000117 Gtype b'postag::' | ||
| 378 | +0.000115 O b'+1:lemma:for' | ||
| 379 | +0.000056 O b'-1:lemma:Fur' | ||
| 380 | +0.000047 Air b'+1:postag::' | ||
| 381 | +0.000047 O b'-1:lemma:in' | ||
| 382 | +0.000045 O b'lemma:hour' | ||
| 383 | +0.000020 O b'-1:lemma:be' | ||
| 384 | +0.000020 Supp b'+1:lemma:respiratory' | ||
| 385 | +0.000003 O b'+1:lemma:ChIP-Seq' | ||
| 386 | +0.000000 Phase b'-1:lemma:to' | ||
| 387 | +0.000000 Phase b'-1:postag:TO' | ||
| 388 | +-0.000012 O b'+1:lemma:phase' | ||
| 389 | +-0.000031 O b'lemma:\xc2\xb0c' | ||
| 390 | +-0.000095 O b'+1:lemma:c' | ||
| 391 | +-0.000192 OD b'-1:lemma:a' | ||
| 392 | +-0.000224 OD b'+1:lemma:0.4' | ||
| 393 | +-0.000561 OD b'-1:postag:DT' | ||
| 394 | +-0.000675 O b'lemma:anaerobic' | ||
| 395 | +-0.001077 Gtype b'+1:lemma:2' | ||
| 396 | +-0.001543 Supp b'lemma:and' | ||
| 397 | +-0.001755 Air b'-1:lemma:aerobically' | ||
| 398 | +-0.002433 O b'+1:lemma:aerobically' | ||
| 399 | +-0.002622 OD b'+1:postag:-LRB-' | ||
| 400 | +-0.003351 O b'lemma:o2' | ||
| 401 | +-0.003461 Supp b'lemma:mm' | ||
| 402 | +-0.003669 Med b'+1:postag:IN' | ||
| 403 | +-0.003709 OD b'postag:IN' | ||
| 404 | +-0.003711 O b'-1:lemma:mm' | ||
| 405 | +-0.004712 O b'-1:postag:-RRB-' | ||
| 406 | +-0.005352 Supp b'+1:lemma:-rrb-' | ||
| 407 | +-0.005698 Supp b'+1:postag:-RRB-' | ||
| 408 | +-0.006752 O b'+1:lemma:grow' | ||
| 409 | +-0.010187 Air b'-1:lemma:and' | ||
| 410 | +-0.010327 Med b'postag:JJ' | ||
| 411 | +-0.011310 O b'-1:postag:VBN' | ||
| 412 | +-0.014869 Gtype b'-1:postag:NNP' | ||
| 413 | +-0.017264 O b'+1:lemma:rep1' | ||
| 414 | +-0.019988 O b'-1:lemma:1' | ||
| 415 | +-0.020468 Air b'postag:CC' | ||
| 416 | +-0.024010 O b'-1:lemma:,' | ||
| 417 | +-0.024010 O b'-1:postag:,' | ||
| 418 | +-0.032490 Air b'+1:postag:-LRB-' | ||
| 419 | +-0.038677 Air b'+1:lemma:-lrb-' | ||
| 420 | +-0.042409 Gtype b'-1:postag:NN' | ||
| 421 | +-0.045287 O b'+1:lemma:0.4' | ||
| 422 | +-0.048558 OD b'postag:JJ' | ||
| 423 | +-0.052074 O b'-1:lemma:e.' | ||
| 424 | +-0.054143 O b'+1:lemma:or' | ||
| 425 | +-0.055074 O b'+1:lemma:\xc2\xb0c' | ||
| 426 | +-0.057686 Gtype b'-1:postag:CD' | ||
| 427 | +-0.059261 O b'lemma:grow' | ||
| 428 | +-0.064670 Air b'-1:postag:CC' | ||
| 429 | +-0.085677 Phase b'-1:postag:NN' | ||
| 430 | +-0.088185 O b'+1:lemma:300' | ||
| 431 | +-0.091727 O b'-1:lemma:o2' | ||
| 432 | +-0.094970 O b'lemma:n2' | ||
| 433 | +-0.095466 O b'-1:lemma:0.1' | ||
| 434 | +-0.100732 O b'-1:lemma:30' | ||
| 435 | +-0.104433 O b'+1:lemma:arginine' | ||
| 436 | +-0.107064 O b'+1:lemma:5' | ||
| 437 | +-0.119788 Med b'postag:CD' | ||
| 438 | +-0.121641 O b'+1:lemma:until' | ||
| 439 | +-0.126774 OD b'+1:postag:CD' | ||
| 440 | +-0.129423 Anti b'+1:postag:JJ' | ||
| 441 | +-0.131961 Supp b'+1:postag:VBN' | ||
| 442 | +-0.134047 Supp b'postag:CC' | ||
| 443 | +-0.137677 Gtype b'postag:CD' | ||
| 444 | +-0.149809 O b'-1:lemma:from' | ||
| 445 | +-0.150140 Temp b'postag:JJ' | ||
| 446 | +-0.157105 O b'-1:lemma:-lrb-' | ||
| 447 | +-0.163836 O b'+1:lemma:.' | ||
| 448 | +-0.163836 O b'+1:postag:.' | ||
| 449 | +-0.176704 O b'lemma:co2' | ||
| 450 | +-0.183646 O b'-1:lemma:cra' | ||
| 451 | +-0.186855 Med b'+1:postag:NN' | ||
| 452 | +-0.194451 O b'+1:lemma:-rrb-' | ||
| 453 | +-0.195654 O b'lemma:\xce\xb4fur' | ||
| 454 | +-0.204517 O b'+1:postag:IN' | ||
| 455 | +-0.207835 O b'-1:lemma:the' | ||
| 456 | +-0.220665 O b'-1:lemma:of' | ||
| 457 | +-0.229001 Phase b'+1:postag:NN' | ||
| 458 | +-0.237611 pH b'postag:NN' | ||
| 459 | +-0.240067 O b'-1:postag:IN' | ||
| 460 | +-0.271765 Phase b'-1:lemma:at' | ||
| 461 | +-0.272351 O b'+1:postag:NNS' | ||
| 462 | +-0.288235 O b'-1:lemma:sample' | ||
| 463 | +-0.292134 O b'lemma:lb' | ||
| 464 | +-0.307663 O b'postag:RB' | ||
| 465 | +-0.309475 O b'-1:lemma:ml' | ||
| 466 | +-0.310188 Air b'-1:lemma:or' | ||
| 467 | +-0.311946 O b'+1:lemma:%' | ||
| 468 | +-0.326171 O b'-1:postag:-LRB-' | ||
| 469 | +-0.346740 O b'lemma:dissolve' | ||
| 470 | +-0.377272 Med b'-1:postag:NN' | ||
| 471 | +-0.382593 Temp b'postag:NN' | ||
| 472 | +-0.388931 O b'lemma:od600' | ||
| 473 | +-0.389222 Air b'postag:CD' | ||
| 474 | +-0.434666 O b'-1:lemma:0.2' | ||
| 475 | +-0.436034 Gversion b'+1:postag:NN' | ||
| 476 | +-0.444684 O b'-1:lemma:~' | ||
| 477 | +-0.447800 Phase b'-1:postag:JJ' | ||
| 478 | +-0.479171 O b'-1:lemma:od600' | ||
| 479 | +-0.501180 O b'+1:lemma:0.3' | ||
| 480 | +-0.508699 O b'lemma:20' | ||
| 481 | +-0.510331 O b'lemma:phase' | ||
| 482 | +-0.515267 Supp b'+1:lemma:rifampicin' | ||
| 483 | +-0.563739 O b'-1:lemma:grow' | ||
| 484 | +-0.564966 OD b'+1:postag:NN' | ||
| 485 | +-0.590510 O b'lemma:anaerobically' | ||
| 486 | +-0.599810 O b'-1:lemma:rpob' | ||
| 487 | +-0.601743 O b'-1:lemma:37' | ||
| 488 | +-0.610426 O b'+1:postag:-RRB-' | ||
| 489 | +-0.616300 O b'lemma:0.3' | ||
| 490 | +-0.638052 O b'-1:postag::' | ||
| 491 | +-0.643137 Phase b'postag:JJ' | ||
| 492 | +-0.663649 Air b'-1:postag:JJ' | ||
| 493 | +-0.669047 O b'+1:lemma:fecl2' | ||
| 494 | +-0.674359 Technique b'-1:postag::' | ||
| 495 | +-0.688223 O b'lemma:37' | ||
| 496 | +-0.710522 Temp b'+1:lemma:to' | ||
| 497 | +-0.710522 Temp b'+1:postag:TO' | ||
| 498 | +-0.719253 O b'+1:postag:VBG' | ||
| 499 | +-0.763315 OD b'lemma:-lrb-' | ||
| 500 | +-0.811771 O b'+1:lemma:cell' | ||
| 501 | +-0.814345 Supp b'+1:lemma:acetate' | ||
| 502 | +-0.815613 O b'lemma:of' | ||
| 503 | +-0.847971 Supp b'-1:lemma:%' | ||
| 504 | +-0.882271 O b'-1:lemma:co2' | ||
| 505 | +-0.885833 O b'lemma:fecl2' | ||
| 506 | +-0.926916 O b'lemma:0.2' | ||
| 507 | +-0.956430 O b'+1:lemma:g/l' | ||
| 508 | +-0.983784 O b'-1:postag:VBG' | ||
| 509 | +-0.983894 O b'lemma:0.1' | ||
| 510 | +-1.010718 O b'+1:lemma:hour' | ||
| 511 | +-1.016547 OD b'postag:-LRB-' | ||
| 512 | +-1.050740 O b'lemma:mid-log' | ||
| 513 | +-1.054828 O b'-1:lemma:dissolve' | ||
| 514 | +-1.054828 O b'+1:lemma:methanol' | ||
| 515 | +-1.099862 O b'lemma:2h' | ||
| 516 | +-1.099862 O b'-1:lemma:additional' | ||
| 517 | +-1.167797 O b'+1:lemma:+' | ||
| 518 | +-1.232705 Anti b'postag:NNP' | ||
| 519 | +-1.359414 Air b'+1:postag:JJ' | ||
| 520 | +-1.434137 O b'-1:lemma:IP' | ||
| 521 | +-1.480595 O b'-1:lemma:ompr' | ||
| 522 | +-1.489420 O b'+1:lemma:in' | ||
| 523 | +-1.499340 O b'+1:lemma:at' | ||
| 524 | +-1.520824 O b'lemma:wt' | ||
| 525 | +-1.526038 O b'+1:lemma:supplement' | ||
| 526 | +-1.551927 Air b'postag:NN' | ||
| 527 | +-1.631005 O b'-1:lemma:nsrr' | ||
| 528 | +-1.648045 O b'lemma:methanol' | ||
| 529 | +-1.709156 O b'lemma:rifampicin' | ||
| 530 | +-1.751173 Supp b'postag:JJ' | ||
| 531 | +-2.001540 O b'-1:lemma:2' | ||
| 532 | +-2.347334 O b'+1:lemma:2' | ||
| 533 | +-2.780459 O b'+1:lemma:1' | ||
| 534 | +-3.924496 O b'-1:lemma:_' | ||
| 535 | +-4.403653 O b'-1:lemma::' | ||
| 536 | + |
| 1 | ********** TRAINING AND TESTING REPORT ********** | 1 | ********** TRAINING AND TESTING REPORT ********** |
| 2 | Training file: training-data-set-70_v4.txt | 2 | Training file: training-data-set-70_v4.txt |
| 3 | 3 | ||
| 4 | -best params:{'c1': 0.15174828379035918, 'c2': 0.004631150546332649} | 4 | +best params:{'c1': 0.04677173929140849, 'c2': 0.02379834069563392} |
| 5 | -best CV score:0.8039437168420447 | 5 | +best CV score:0.7990064924027899 |
| 6 | -model size: 0.06M | 6 | +model size: 0.09M |
| 7 | 7 | ||
| 8 | -Flat F1: 0.7844164550442063 | 8 | +Flat F1: 0.7946783128458758 |
| 9 | precision recall f1-score support | 9 | precision recall f1-score support |
| 10 | 10 | ||
| 11 | OD 1.000 0.405 0.577 37 | 11 | OD 1.000 0.405 0.577 37 |
| 12 | pH 1.000 1.000 1.000 12 | 12 | pH 1.000 1.000 1.000 12 |
| 13 | Technique 0.952 0.909 0.930 22 | 13 | Technique 0.952 0.909 0.930 22 |
| 14 | - Med 0.800 0.842 0.821 57 | 14 | + Med 0.897 0.912 0.904 57 |
| 15 | Temp 0.818 1.000 0.900 18 | 15 | Temp 0.818 1.000 0.900 18 |
| 16 | Vess 0.000 0.000 0.000 0 | 16 | Vess 0.000 0.000 0.000 0 |
| 17 | Agit 0.000 0.000 0.000 0 | 17 | Agit 0.000 0.000 0.000 0 |
| 18 | Phase 1.000 0.947 0.973 19 | 18 | Phase 1.000 0.947 0.973 19 |
| 19 | - Air 0.807 0.742 0.773 62 | 19 | + Air 0.754 0.742 0.748 62 |
| 20 | - Anti 0.571 0.444 0.500 9 | 20 | + Anti 1.000 0.444 0.615 9 |
| 21 | Strain 1.000 1.000 1.000 1 | 21 | Strain 1.000 1.000 1.000 1 |
| 22 | - Gtype 0.866 0.792 0.828 106 | 22 | + Gtype 0.863 0.774 0.816 106 |
| 23 | Substrain 0.000 0.000 0.000 1 | 23 | Substrain 0.000 0.000 0.000 1 |
| 24 | - Supp 0.807 0.676 0.736 136 | 24 | + Supp 0.865 0.662 0.750 136 |
| 25 | Gversion 0.000 0.000 0.000 0 | 25 | Gversion 0.000 0.000 0.000 0 |
| 26 | 26 | ||
| 27 | -avg / total 0.848 0.746 0.784 480 | 27 | +avg / total 0.877 0.746 0.795 480 |
| 28 | 28 | ||
| 29 | 29 | ||
| 30 | Top likely transitions: | 30 | Top likely transitions: |
| 31 | -Agit -> Agit 6.791682 | 31 | +Agit -> Agit 6.134641 |
| 32 | -OD -> OD 6.218349 | 32 | +OD -> OD 5.677741 |
| 33 | -Med -> Med 5.630081 | 33 | +Anti -> Anti 5.362057 |
| 34 | -Temp -> Temp 5.606252 | 34 | +Temp -> Temp 5.263270 |
| 35 | -Anti -> Anti 5.592992 | 35 | +Med -> Med 5.132754 |
| 36 | -Air -> Air 5.496160 | 36 | +O -> O 4.728785 |
| 37 | -Gtype -> Gtype 5.032489 | 37 | +Air -> Air 4.725974 |
| 38 | -O -> O 4.908086 | 38 | +Gversion -> Gversion 4.440261 |
| 39 | -Phase -> Phase 4.730701 | 39 | +Phase -> Phase 4.387821 |
| 40 | -Gversion -> Gversion 4.476840 | 40 | +Gtype -> Gtype 4.174708 |
| 41 | -Technique -> Technique 4.434337 | 41 | +Supp -> Supp 3.913450 |
| 42 | -Supp -> Supp 4.084657 | 42 | +Technique -> Technique 3.154023 |
| 43 | -pH -> pH 1.968754 | 43 | +pH -> pH 2.449543 |
| 44 | -Substrain -> Gtype 1.897449 | 44 | +O -> Supp 1.770580 |
| 45 | -O -> Supp 1.725753 | 45 | +Gtype -> Supp 1.668161 |
| 46 | -Air -> O 1.650897 | 46 | +Substrain -> Gtype 1.640169 |
| 47 | -O -> Gtype 1.589697 | 47 | +Air -> O 1.249366 |
| 48 | -Gtype -> Supp 1.521503 | 48 | +O -> Gtype 1.164153 |
| 49 | -O -> Technique 1.404884 | 49 | +O -> Technique 1.104849 |
| 50 | -Technique -> Air 0.905351 | 50 | +O -> Temp 0.933808 |
| 51 | -O -> Temp 0.873962 | 51 | +Technique -> Air 0.909479 |
| 52 | -O -> Anti 0.719006 | 52 | +Gtype -> pH 0.842607 |
| 53 | -Med -> O 0.502394 | 53 | +O -> Anti 0.645228 |
| 54 | -O -> Gversion 0.498028 | 54 | +Gtype -> Air 0.522992 |
| 55 | -Temp -> O 0.179242 | 55 | +O -> Strain 0.463558 |
| 56 | -OD -> Phase 0.164045 | 56 | +Med -> O 0.403658 |
| 57 | -O -> Phase 0.156883 | 57 | +O -> Gversion 0.351834 |
| 58 | -Phase -> O 0.137263 | 58 | +Phase -> O 0.234348 |
| 59 | -Gtype -> Air 0.075321 | 59 | +O -> pH 0.165655 |
| 60 | -Gtype -> pH 0.063986 | 60 | +O -> Phase 0.095939 |
| 61 | -O -> Med 0.051856 | 61 | +Temp -> O 0.048543 |
| 62 | -O -> Strain 0.030496 | 62 | +O -> Vess 0.041922 |
| 63 | -Supp -> O 0.016375 | 63 | +O -> Med 0.035257 |
| 64 | -Anti -> O 0.009641 | 64 | +OD -> Phase 0.028957 |
| 65 | -O -> OD -0.006635 | 65 | +Anti -> O 0.009316 |
| 66 | -OD -> Med -0.051166 | 66 | +OD -> Anti -0.000732 |
| 67 | -Technique -> OD -0.093116 | 67 | +Phase -> Air -0.015739 |
| 68 | -Supp -> OD -0.100162 | 68 | +Technique -> Gversion -0.018772 |
| 69 | -Supp -> Air -0.273856 | 69 | +Phase -> Med -0.022546 |
| 70 | -Gtype -> O -0.276598 | 70 | +Phase -> Gtype -0.022549 |
| 71 | -Technique -> Gtype -0.372736 | 71 | +Supp -> Vess -0.030895 |
| 72 | -Gtype -> Anti -0.373755 | 72 | +Anti -> Med -0.033179 |
| 73 | -Gtype -> Med -0.384161 | 73 | +pH -> Supp -0.040764 |
| 74 | -OD -> O -0.433058 | 74 | +Supp -> O -0.040968 |
| 75 | -Agit -> O -0.645946 | 75 | +OD -> Temp -0.042912 |
| 76 | -O -> Air -0.659946 | 76 | +O -> OD -0.068011 |
| 77 | -Substrain -> O -0.912411 | 77 | +Gversion -> Gtype -0.074143 |
| 78 | -Gtype -> OD -0.984268 | 78 | +Med -> Gtype -0.079772 |
| 79 | -Supp -> Med -1.212185 | 79 | +OD -> Technique -0.093206 |
| 80 | -Med -> Supp -1.967819 | 80 | +Gversion -> Technique -0.100359 |
| 81 | 81 | ||
| 82 | 82 | ||
| 83 | Top unlikely transitions: | 83 | Top unlikely transitions: |
| 84 | -OD -> OD 6.218349 | 84 | +OD -> Technique -0.093206 |
| 85 | -Med -> Med 5.630081 | 85 | +Gversion -> Technique -0.100359 |
| 86 | -Temp -> Temp 5.606252 | 86 | +Gversion -> O -0.108780 |
| 87 | -Anti -> Anti 5.592992 | 87 | +Gtype -> Temp -0.110250 |
| 88 | -Air -> Air 5.496160 | 88 | +Gtype -> Phase -0.170695 |
| 89 | -Gtype -> Gtype 5.032489 | 89 | +Gversion -> Supp -0.170820 |
| 90 | -O -> O 4.908086 | 90 | +Anti -> Supp -0.187552 |
| 91 | -Phase -> Phase 4.730701 | 91 | +Gtype -> O -0.225882 |
| 92 | -Gversion -> Gversion 4.476840 | 92 | +Air -> Temp -0.230459 |
| 93 | -Technique -> Technique 4.434337 | 93 | +Technique -> O -0.233549 |
| 94 | -Supp -> Supp 4.084657 | 94 | +Anti -> Gtype -0.271657 |
| 95 | -pH -> pH 1.968754 | 95 | +Supp -> pH -0.276160 |
| 96 | -Substrain -> Gtype 1.897449 | 96 | +Supp -> Phase -0.284897 |
| 97 | -O -> Supp 1.725753 | 97 | +Air -> Gtype -0.305208 |
| 98 | -Air -> O 1.650897 | 98 | +Gversion -> Air -0.325062 |
| 99 | -O -> Gtype 1.589697 | 99 | +Med -> Air -0.325731 |
| 100 | -Gtype -> Supp 1.521503 | 100 | +Technique -> Supp -0.334858 |
| 101 | -O -> Technique 1.404884 | 101 | +Air -> Phase -0.349173 |
| 102 | -Technique -> Air 0.905351 | 102 | +OD -> Supp -0.354028 |
| 103 | -O -> Temp 0.873962 | 103 | +Gtype -> Technique -0.374277 |
| 104 | -O -> Anti 0.719006 | 104 | +Supp -> Temp -0.396374 |
| 105 | -Med -> O 0.502394 | 105 | +Phase -> Technique -0.429552 |
| 106 | -O -> Gversion 0.498028 | 106 | +Supp -> Anti -0.516081 |
| 107 | -Temp -> O 0.179242 | 107 | +Air -> Med -0.526139 |
| 108 | -OD -> Phase 0.164045 | 108 | +Anti -> OD -0.539948 |
| 109 | -O -> Phase 0.156883 | 109 | +Supp -> Gversion -0.628938 |
| 110 | -Phase -> O 0.137263 | 110 | +Temp -> Med -0.632351 |
| 111 | -Gtype -> Air 0.075321 | 111 | +OD -> Med -0.653167 |
| 112 | -Gtype -> pH 0.063986 | 112 | +Air -> Supp -0.653757 |
| 113 | -O -> Med 0.051856 | 113 | +Gtype -> Gversion -0.690790 |
| 114 | -O -> Strain 0.030496 | 114 | +Supp -> Gtype -0.708051 |
| 115 | -Supp -> O 0.016375 | 115 | +OD -> Gtype -0.713878 |
| 116 | -Anti -> O 0.009641 | 116 | +Gtype -> Med -0.724292 |
| 117 | -O -> OD -0.006635 | 117 | +Supp -> OD -0.756035 |
| 118 | -OD -> Med -0.051166 | 118 | +OD -> Air -0.790987 |
| 119 | -Technique -> OD -0.093116 | 119 | +Supp -> Technique -0.797069 |
| 120 | -Supp -> OD -0.100162 | 120 | +Air -> OD -0.800777 |
| 121 | -Supp -> Air -0.273856 | 121 | +OD -> O -0.818966 |
| 122 | -Gtype -> O -0.276598 | 122 | +Supp -> Air -0.835352 |
| 123 | -Technique -> Gtype -0.372736 | 123 | +Agit -> O -0.856989 |
| 124 | -Gtype -> Anti -0.373755 | 124 | +Gtype -> Anti -0.935186 |
| 125 | -Gtype -> Med -0.384161 | 125 | +O -> Air -0.982462 |
| 126 | -OD -> O -0.433058 | 126 | +Technique -> OD -1.202863 |
| 127 | -Agit -> O -0.645946 | 127 | +Technique -> pH -1.218760 |
| 128 | -O -> Air -0.659946 | 128 | +Gtype -> OD -1.289303 |
| 129 | -Substrain -> O -0.912411 | 129 | +Substrain -> O -1.293089 |
| 130 | -Gtype -> OD -0.984268 | 130 | +Supp -> Med -1.346101 |
| 131 | -Supp -> Med -1.212185 | 131 | +Technique -> Gtype -1.361871 |
| 132 | -Med -> Supp -1.967819 | 132 | +Med -> Supp -1.701189 |
| 133 | -Phase -> OD -2.190300 | 133 | +Phase -> OD -2.114354 |
| 134 | 134 | ||
| 135 | 135 | ||
| 136 | Top positive: | 136 | Top positive: |
| 137 | -10.442312 Supp b'lemma:Iron' | 137 | +7.534104 O b'lemma:_' |
| 138 | -9.237513 O b'lemma:_' | 138 | +6.628671 O b'lemma:1' |
| 139 | -8.066306 Phase b'lemma:stationary' | 139 | +6.331443 Phase b'lemma:stationary' |
| 140 | -8.024906 Air b'lemma:aerobic' | 140 | +6.147039 Supp b'lemma:Iron' |
| 141 | -7.908903 O b'lemma:1' | 141 | +5.873757 Strain b'lemma:k-12' |
| 142 | -7.889018 Supp b'lemma:nitrate' | 142 | +5.867898 Air b'lemma:anaerobic' |
| 143 | -7.674820 Air b'lemma:anaerobic' | 143 | +5.663960 O b'lemma:2' |
| 144 | -7.633175 Technique b'lemma:ChIP-exo' | 144 | +5.524127 Technique b'lemma:ChIP-exo' |
| 145 | -6.899479 Strain b'lemma:k-12' | 145 | +5.510347 O b'lemma:rpob' |
| 146 | -6.830547 Med b'lemma:MOPS' | 146 | +5.509700 Air b'lemma:aerobic' |
| 147 | -6.657016 O b'lemma:rpob' | 147 | +5.383908 Technique b'lemma:chipseq' |
| 148 | -6.360670 O b'lemma:2' | 148 | +5.138707 Supp b'lemma:pq' |
| 149 | -6.250166 Gtype b'lemma:type' | 149 | +5.111571 O b'lemma:3' |
| 150 | -6.190584 Substrain b'lemma:mg1655' | 150 | +4.862319 Air b'-1:lemma:ChIP-Seq' |
| 151 | -6.146067 Air b'-1:lemma:ChIP-Seq' | 151 | +4.820668 Phase b'lemma:mid-log' |
| 152 | -6.024964 Gversion b'lemma:asm584v2' | 152 | +4.756582 Supp b'lemma:nitrate' |
| 153 | -5.999859 Technique b'lemma:chipseq' | 153 | +4.733587 O b'lemma:rep1' |
| 154 | -5.989574 Phase b'lemma:mid-log' | 154 | +4.695668 Supp b'lemma:nh4cl' |
| 155 | -5.930186 Supp b'lemma:pq' | 155 | +4.657172 Gtype b'lemma:\xce\xb4cra' |
| 156 | -5.914739 O b'lemma:3' | 156 | +4.653346 Gversion b'lemma:asm584v2' |
| 157 | -5.824268 O b'lemma:Custom' | 157 | +4.604440 O b'-1:lemma:tag' |
| 158 | -5.823157 O b'-1:lemma:tag' | 158 | +4.598239 Gtype b'lemma:flag-tag' |
| 159 | -5.790768 O b'-1:lemma:ChIP-exo' | 159 | +4.598239 Gtype b'-1:lemma:c-terminal' |
| 160 | -5.787399 Gtype b'lemma:\xce\xb4cra' | 160 | +4.560223 Supp b'lemma:glucose' |
| 161 | -5.679226 Air b'lemma:Aerobic' | 161 | +4.518418 O b'lemma:rep2' |
| 162 | -5.626571 OD b'lemma:od600' | 162 | +4.442957 Substrain b'lemma:mg1655' |
| 163 | -5.547367 Technique b'lemma:ChIP-Seq' | 163 | +4.384855 O b'postag:IN' |
| 164 | -5.529761 O b'lemma:rep2' | 164 | +4.373803 Gtype b'lemma:arca8myc' |
| 165 | -5.480516 Med b'lemma:LB' | 165 | +4.288264 O b'lemma:rep3' |
| 166 | -5.426406 O b'lemma:rep1' | 166 | +4.280619 Gtype b'lemma:wt' |
| 167 | -5.393841 Gversion b'lemma:nc' | 167 | +4.244271 Supp b'+1:lemma:\xc2\xb5m' |
| 168 | -5.303166 Gtype b'lemma:flag-tag' | 168 | +4.243033 O b'lemma:Cra' |
| 169 | -5.303166 Gtype b'-1:lemma:c-terminal' | 169 | +4.226369 Med b'lemma:MOPS' |
| 170 | -5.281475 Supp b'+1:lemma:\xc2\xb5m' | 170 | +4.201990 Air b'lemma:Aerobic' |
| 171 | -5.272063 O b'lemma:b' | 171 | +4.134023 Med b'lemma:LB' |
| 172 | -5.200310 O b'lemma:rep3' | 172 | +4.091845 Med b'lemma:lb' |
| 173 | -5.142193 OD b'lemma:od450' | 173 | +4.032302 Supp b'lemma:acetate' |
| 174 | -5.096163 O b'lemma:\xcf\x8332' | 174 | +3.973554 O b'lemma:b' |
| 175 | -4.990214 O b'lemma:Cra' | 175 | +3.942411 OD b'lemma:od600' |
| 176 | -4.926222 O b'lemma:a' | 176 | +3.928969 Gtype b'lemma:delta-arca' |
| 177 | -4.919918 Gtype b'-1:lemma:\xe2\x88\x86' | 177 | +3.863545 Supp b'lemma:no3' |
| 178 | -4.861544 Supp b'lemma:nh4cl' | 178 | +3.858283 O b'lemma:\xcf\x8332' |
| 179 | -4.812167 Gtype b'+1:lemma:type' | 179 | +3.832869 O b'lemma:a' |
| 180 | -4.803668 Gtype b'lemma:wt' | 180 | +3.823681 Gtype b'lemma:fnr8myc' |
| 181 | -4.778995 Gtype b'lemma:delta-arca' | 181 | +3.816982 Technique b'lemma:rna-seq' |
| 182 | -4.686613 Gtype b'lemma:arca8myc' | 182 | +3.782384 Gtype b'-1:lemma:\xe2\x88\x86' |
| 183 | -4.679240 O b'postag::' | 183 | +3.739595 Anti b'lemma:none' |
| 184 | -4.678684 O b'postag:IN' | 184 | +3.727287 Supp b'lemma:Fe' |
| 185 | -4.626493 OD b'+1:lemma:stationary' | 185 | +3.715581 O b'+1:postag:RB' |
| 186 | -4.555800 Med b'lemma:lb' | 186 | +3.678487 Supp b'lemma:dpd' |
| 187 | -4.525977 Gversion b'-1:lemma:nc' | 187 | +3.659984 O b'lemma:.' |
| 188 | -4.514336 Supp b'lemma:glucose' | 188 | +3.659984 O b'postag:.' |
| 189 | -4.505232 Supp b'lemma:Fe' | 189 | +3.648715 O b'-1:lemma:ChIP-exo' |
| 190 | -4.499806 Gtype b'lemma:fnr8myc' | 190 | +3.614582 Technique b'lemma:chip-seq' |
| 191 | -4.365930 Technique b'lemma:rna-seq' | 191 | +3.583103 Gtype b'lemma:\xe2\x88\x86' |
| 192 | -4.353053 Supp b'lemma:rifampicin' | 192 | +3.579453 O b'lemma:Custom' |
| 193 | -4.322748 Gtype b'lemma:\xce\xb4fur' | 193 | +3.579229 Supp b'lemma:rifampicin' |
| 194 | -4.244815 Anti b'lemma:none' | 194 | +3.576123 O b'-1:lemma:Aerobic' |
| 195 | -4.188590 O b'-1:lemma:Aerobic' | 195 | +3.569749 Anti b'lemma:seqa' |
| 196 | -4.181353 Temp b'-1:lemma:sample' | 196 | +3.487112 O b'lemma:-' |
| 197 | -4.061718 Supp b'lemma:dpd' | 197 | +3.459968 Gtype b'lemma:type' |
| 198 | -4.014721 Gtype b'lemma:delta-fnr' | 198 | +3.455121 Supp b'lemma:fructose' |
| 199 | -3.991603 Technique b'lemma:rnaseq' | 199 | +3.452777 O b'postag::' |
| 200 | -3.988938 O b'lemma:-' | 200 | +3.447911 Technique b'lemma:rnaseq' |
| 201 | -3.968688 O b'-1:lemma:0.3-0.35' | 201 | +3.441629 O b'lemma:CEL' |
| 202 | -3.942988 Technique b'lemma:chip-seq' | 202 | +3.393478 Gtype b'+1:lemma:type' |
| 203 | -3.894918 Supp b'lemma:acetate' | 203 | +3.377102 OD b'lemma:od450' |
| 204 | -3.894666 O b'lemma:or' | 204 | +3.366350 Supp b'-1:lemma:Cra' |
| 205 | -3.891632 O b'lemma:.' | 205 | +3.356047 Gversion b'lemma:chip-seq' |
| 206 | -3.891632 O b'postag:.' | 206 | +3.319052 O b'+1:lemma:od600' |
| 207 | -3.833478 Supp b'lemma:arginine' | 207 | +3.292164 Gtype b'lemma:delta-fnr' |
| 208 | -3.829349 Supp b'lemma:no3' | 208 | +3.267801 Gtype b'+1:lemma:with' |
| 209 | -3.814064 Temp b'-1:lemma:\xcf\x8332' | 209 | +3.173282 Gversion b'lemma:nc' |
| 210 | -3.734701 Gtype b'+1:lemma:ph5' | 210 | +3.159588 Supp b'lemma:arginine' |
| 211 | -3.730485 Gtype b'lemma:\xce\xb4ompr' | 211 | +3.157495 Supp b'+1:lemma:Deficient' |
| 212 | -3.716590 Anti b'lemma:seqa' | 212 | +3.142138 Supp b'+1:lemma:1' |
| 213 | -3.692742 Gtype b'lemma:wild-type' | 213 | +3.110124 Med b'+1:lemma:0.4' |
| 214 | -3.691658 Vess b'lemma:flask' | 214 | +3.070894 pH b'lemma:ph5' |
| 215 | -3.691658 Vess b'-1:lemma:warm' | 215 | +3.070894 pH b'+1:lemma:.5' |
| 216 | -3.680323 O b'+1:lemma:od600' | 216 | +3.055480 O b'postag:VBN' |
| 217 | -3.566813 pH b'lemma:ph5' | 217 | +3.042474 O b'-1:lemma:glucose' |
| 218 | -3.566813 pH b'+1:lemma:.5' | 218 | +3.026214 Gtype b'lemma:wild-type' |
| 219 | -3.560406 Gtype b'lemma:nsrr' | 219 | +3.023824 O b'-1:lemma:0.3-0.35' |
| 220 | -3.535215 O b'-1:lemma:type' | 220 | +3.014842 Vess b'lemma:flask' |
| 221 | -3.524717 O b'+1:postag:RB' | 221 | +3.014842 Vess b'-1:lemma:warm' |
| 222 | -3.508650 Supp b'lemma:fructose' | 222 | +3.008710 Gtype b'lemma:\xce\xb4fur' |
| 223 | -3.483038 O b'lemma:chip' | 223 | +3.002326 Air b'postag:RB' |
| 224 | -3.461944 Supp b'-1:lemma:Cra' | 224 | +2.997223 O b'-1:lemma:anaerobic' |
| 225 | -3.457426 Strain b'+1:lemma:substr' | 225 | +2.995282 Strain b'+1:lemma:substr' |
| 226 | -3.436475 Supp b'+1:lemma:1' | 226 | +2.984104 Technique b'lemma:ChIP-Seq' |
| 227 | -3.379628 Anti b'lemma:anti-myc' | 227 | +2.963817 O b'-1:lemma:lb' |
| 228 | -3.377053 Anti b'+1:lemma:antibody' | 228 | +2.963222 O b'lemma:affyexp' |
| 229 | -3.370766 Technique b'-1:lemma:IP' | 229 | +2.932438 O b'lemma:with' |
| 230 | -3.365056 Gtype b'lemma:\xe2\x88\x86' | 230 | +2.930598 O b'lemma:chip-arca' |
| 231 | -3.358640 O b'-1:lemma:anaerobic' | 231 | +2.927299 O b'lemma:or' |
| 232 | -3.348760 O b'lemma:CEL' | 232 | +2.924379 Med b'lemma:m63' |
| 233 | -3.347149 Med b'+1:lemma:0.4' | 233 | +2.907457 Anti b'lemma:anti-myc' |
| 234 | -3.346755 Anti b'lemma:anti-rpos' | 234 | +2.863249 O b'lemma:oxyr' |
| 235 | -3.291412 Gtype b'-1:lemma:ptac' | 235 | +2.862524 O b'lemma:s' |
| 236 | -3.278055 Gversion b'lemma:chip-seq' | 236 | +2.860715 Gtype b'lemma:nsrr' |
| 237 | -3.276131 O b'-1:lemma:0.3' | 237 | +2.848040 Med b'+1:lemma:minimal' |
| 238 | -3.234361 O b'-1:lemma:glucose' | 238 | +2.835399 Gversion b'lemma:u00096' |
| 239 | -3.215739 O b'lemma:with' | 239 | +2.835399 Gversion b'+1:lemma:.2' |
| 240 | -3.173824 Technique b'+1:lemma:chip-exo' | 240 | +2.784084 Gversion b'lemma:.2' |
| 241 | -3.151844 Med b'lemma:m63' | 241 | +2.784084 Gversion b'-1:lemma:u00096' |
| 242 | -3.095334 O b'lemma:2-3' | 242 | +2.759399 O b'lemma:argr' |
| 243 | -3.095161 Gversion b'lemma:.2' | 243 | +2.748921 Supp b'+1:lemma:2' |
| 244 | -3.095161 Gversion b'-1:lemma:u00096' | 244 | +2.745607 Gtype b'lemma:\xce\xb4soxs' |
| 245 | -3.091572 O b'postag:VBN' | 245 | +2.734894 Gtype b'lemma:WT' |
| 246 | -3.064702 Gversion b'lemma:u00096' | 246 | +2.724494 Supp b'+1:lemma:_' |
| 247 | -3.064702 Gversion b'+1:lemma:.2' | 247 | +2.724148 Gtype b'-1:lemma:ptac' |
| 248 | -3.050277 Temp b'-1:lemma:37' | 248 | +2.708775 O b'lemma:ompr' |
| 249 | -3.030666 Gtype b'+1:lemma:with' | 249 | +2.704416 O b'-1:lemma:type' |
| 250 | -3.027065 Supp b'+1:lemma:hour' | 250 | +2.702036 Temp b'lemma:\xc2\xb0c' |
| 251 | -3.014173 O b'+1:lemma:chip-seq' | 251 | +2.697776 Air b'lemma:anaerobically' |
| 252 | -3.004960 Gtype b'+1:lemma:flagtag' | 252 | +2.689994 O b'-1:lemma:stpa' |
| 253 | -2.985168 O b'lemma:for' | 253 | +2.680820 O b'+1:lemma:anti-fur' |
| 254 | -2.975989 Supp b'-1:lemma:+' | 254 | +2.655921 Air b'lemma:Anaerobic' |
| 255 | -2.944441 O b'lemma:oxyr' | 255 | +2.655797 Supp b'-1:lemma:+' |
| 256 | -2.938101 Gtype b'-1:lemma:phtpg' | 256 | +2.622529 Technique b'-1:lemma:IP' |
| 257 | -2.932689 Gtype b'-1:lemma:rpob' | 257 | +2.621136 Med b'+1:lemma:2.0' |
| 258 | -2.920019 Gtype b'+1:lemma:pq' | 258 | +2.617145 Gversion b'lemma:000913' |
| 259 | -2.881207 Supp b'lemma:nacl' | 259 | +2.616146 Gtype b'lemma:\xce\xb4ompr' |
| 260 | -2.860299 O b'lemma:s' | 260 | +2.590492 Gversion b'+1:lemma:000913' |
| 261 | -2.845172 Supp b'+1:lemma:2' | 261 | +2.585180 Temp b'-1:lemma:43' |
| 262 | -2.832035 pH b'lemma:.5' | 262 | +2.573573 O b'lemma:purr' |
| 263 | -2.832035 pH b'-1:lemma:ph5' | 263 | +2.573022 Supp b'lemma:nacl' |
| 264 | -2.826929 Supp b'lemma:Leu' | 264 | +2.569061 Gtype b'+1:lemma:flagtag' |
| 265 | -2.812269 O b'+1:postag:NNP' | 265 | +2.519791 O b'+1:lemma:pq' |
| 266 | -2.781059 Air b'lemma:anaerobically' | 266 | +2.506876 Anti b'+1:lemma:antibody' |
| 267 | -2.778609 O b'-1:lemma:lb' | 267 | +2.476869 O b'lemma:for' |
| 268 | -2.760280 O b'+1:lemma:o.d.' | 268 | +2.476779 OD b'+1:lemma:stationary' |
| 269 | -2.735776 Temp b'lemma:\xc2\xb0c' | 269 | +2.468830 Gversion b'-1:lemma:nc' |
| 270 | -2.720218 O b'lemma:at' | 270 | +2.462372 Supp b'lemma:Leu' |
| 271 | -2.711579 Technique b'-1:lemma:chip-exo' | 271 | +2.457208 O b'lemma:Lrp' |
| 272 | -2.699401 O b'lemma:ompr' | 272 | +2.436354 Anti b'lemma:anti-rpos' |
| 273 | -2.690406 Air b'-1:lemma:-' | 273 | +2.425547 Gtype b'lemma:ptac' |
| 274 | -2.684684 Gtype b'lemma:\xce\xb4soxs' | 274 | +2.423670 O b'lemma:Fur' |
| 275 | -2.665215 Supp b'+1:lemma:_' | 275 | +2.407480 Technique b'-1:lemma:chip-exo' |
| 276 | -2.660630 Phase b'-1:lemma:until' | 276 | +2.398179 Gtype b'lemma:pk4854' |
| 277 | -2.607235 Med b'lemma:L' | 277 | +2.385757 O b'+1:lemma:o.d.' |
| 278 | -2.607235 Med b'+1:lemma:broth' | 278 | +2.379658 Technique b'-1:lemma:input' |
| 279 | -2.606476 Med b'+1:lemma:minimal' | 279 | +2.376821 O b'+1:lemma:chip-seq' |
| 280 | -2.603782 O b'+1:lemma:pq' | 280 | +2.371298 O b'lemma:chip' |
| 281 | -2.599075 Supp b'-1:lemma:\xc2\xb5m' | 281 | +2.356254 Gtype b'+1:lemma:pq' |
| 282 | -2.567370 O b'-1:lemma:\xc2\xb0c' | 282 | +2.346453 Substrain b'+1:lemma:phtpg' |
| 283 | -2.524994 Supp b'lemma:Adenine' | 283 | +2.325961 Supp b'lemma:Adenine' |
| 284 | -2.522705 Gtype b'lemma:deltaseqa' | 284 | +2.324750 Gtype b'lemma:deltaseqa' |
| 285 | -2.522705 Gtype b'-1:lemma:old' | 285 | +2.324750 Gtype b'-1:lemma:old' |
| 286 | -2.484836 Temp b'-1:lemma:43' | 286 | +2.319652 O b'-1:lemma:dpd' |
| 287 | -2.470532 Supp b'lemma:20' | 287 | +2.309116 Temp b'lemma:43' |
| 288 | -2.469573 O b'lemma:culture' | 288 | +2.274038 Phase b'lemma:phase' |
| 289 | -2.450105 Technique b'-1:lemma:input' | 289 | +2.271043 O b'lemma:2-3' |
| 290 | -2.449141 O b'postag:DT' | 290 | +2.257073 O b'lemma:soxs' |
| 291 | -2.444936 Med b'+1:lemma:2.0' | 291 | +2.257073 O b'lemma:soxr' |
| 292 | -2.421299 Med b'-1:lemma:ml' | 292 | +2.244724 Gtype b'-1:lemma:rpob' |
| 293 | -2.419343 Temp b'lemma:43' | 293 | +2.229381 Technique b'+1:lemma:chip-exo' |
| 294 | -2.410866 O b'+1:lemma:mid-log' | 294 | +2.222498 Temp b'-1:lemma:\xcf\x8332' |
| 295 | -2.405996 Supp b'lemma:iptg' | 295 | +2.216473 Phase b'-1:lemma:mid-log' |
| 296 | -2.397598 Air b'postag:RB' | 296 | +2.208114 Air b'-1:lemma:-' |
| 297 | -2.397388 Med b'+1:lemma:g/l' | 297 | +2.198129 O b'postag:SYM' |
| 298 | -2.360509 Gtype b'-1:lemma:nsrr' | 298 | +2.197977 Temp b'-1:lemma:sample' |
| 299 | -2.349789 O b'lemma:condition' | 299 | +2.197671 pH b'lemma:.5' |
| 300 | -2.348126 Gtype b'lemma:ptac' | 300 | +2.197671 pH b'-1:lemma:ph5' |
| 301 | -2.347726 Gversion b'lemma:000913' | 301 | +2.191655 O b'lemma:pt7' |
| 302 | -2.337057 O b'lemma:chip-arca' | 302 | +2.179497 Temp b'-1:lemma:37' |
| 303 | -2.336687 Gtype b'lemma:pk4854' | 303 | +2.163485 O b'lemma:at' |
| 304 | -2.327964 Med b'lemma:media' | 304 | +2.159035 O b'-1:lemma:l1' |
| 305 | -2.272835 O b'-1:lemma:stpa' | 305 | +2.157894 Med b'lemma:L' |
| 306 | -2.265750 O b'lemma:Lrp' | 306 | +2.157894 Med b'+1:lemma:broth' |
| 307 | -2.265406 O b'lemma:soxs' | 307 | +2.155748 Gtype b'+1:lemma:ph5' |
| 308 | -2.265406 O b'lemma:soxr' | 308 | +2.154483 Supp b'+1:lemma:hour' |
| 309 | -2.262228 O b'postag:VBG' | 309 | +2.149987 Med b'postag:NNP' |
| 310 | -2.253322 O b'-1:lemma:l1' | 310 | +2.130185 Gtype b'lemma:\xce\xb4oxyr' |
| 311 | -2.237857 Air b'lemma:anerobically' | 311 | +2.128728 Technique b'postag:NNP' |
| 312 | -2.184062 O b'-1:lemma:media' | 312 | +2.120879 Gtype b'+1:lemma:aerobic' |
| 313 | -2.159204 Supp b'-1:lemma:with' | 313 | +2.119345 O b'+1:lemma:43' |
| 314 | -2.158856 O b'lemma:genotype/variation' | 314 | +2.118846 Temp b'+1:lemma:\xc2\xb0c' |
| 315 | -2.157878 O b'-1:lemma:dpd' | 315 | +2.117976 O b'postag:DT' |
| 316 | -2.152540 Gtype b'lemma:dfnr' | 316 | +2.112237 Gtype b'lemma:\xce\xb4soxr' |
| 317 | -2.148134 O b'lemma:affyexp' | 317 | +2.103111 O b'lemma:chip-fnr' |
| 318 | -2.137699 O b'postag:CC' | 318 | +2.095565 Gtype b'-1:lemma:_' |
| 319 | -2.111648 Supp b'lemma:methanol' | 319 | +2.095139 Air b'lemma:anerobically' |
| 320 | -2.108494 O b'+1:postag:VBP' | 320 | +2.088059 pH b'+1:postag:CD' |
| 321 | -2.075540 OD b'lemma:phase' | 321 | +2.082289 Vess b'-1:postag:VBN' |
| 322 | -2.075417 Gversion b'postag:CD' | 322 | +2.082182 Air b'+1:lemma:at' |
| 323 | -2.068323 Supp b'lemma:0.2' | 323 | +2.072000 Supp b'-1:lemma:\xc2\xb5m' |
| 324 | -2.064252 Gtype b'-1:lemma:vector' | 324 | +2.063372 O b'lemma:culture' |
| 325 | -2.056563 OD b'lemma:0.3' | 325 | +2.052919 Supp b'+1:postag:CC' |
| 326 | -2.050748 OD b'-1:lemma:~' | 326 | +2.051661 Gtype b'+1:lemma:_' |
| 327 | -2.050625 Gtype b'lemma:WT' | 327 | +2.042397 Supp b'lemma:iptg' |
| 328 | -2.032571 Temp b'lemma:37' | 328 | +2.038377 OD b'-1:lemma:~' |
| 329 | -2.018067 Gtype b'+1:lemma:_' | 329 | +2.032972 Air b'-1:postag::' |
| 330 | -2.017840 O b'lemma:Fur' | 330 | +2.032763 Med b'lemma:broth' |
| 331 | -2.011856 O b'lemma:argr' | 331 | +2.032763 Med b'-1:lemma:L' |
| 332 | -2.006861 Technique b'+1:lemma:rna-seq' | 332 | +2.015625 O b'lemma:genotype/variation' |
| 333 | -1.998918 O b'lemma:purr' | 333 | +2.011175 Phase b'+1:lemma:for' |
| 334 | -1.996704 Phase b'+1:lemma:for' | 334 | +2.009864 Med b'lemma:glucose' |
| 335 | -1.989638 Med b'lemma:glucose' | 335 | +2.006608 Med b'+1:lemma:+' |
| 336 | -1.943868 Phase b'-1:lemma:mid-log' | 336 | +2.006544 O b'postag:CC' |
| 337 | 337 | ||
| 338 | 338 | ||
| 339 | Top negative: | 339 | Top negative: |
| 340 | -0.000312 OD b'-1:lemma:mid-log' | 340 | +-0.030705 O b'-1:lemma:chip-exo' |
| 341 | -0.000096 OD b'-1:postag:VBN' | 341 | +-0.033076 OD b'lemma:~' |
| 342 | -0.000087 Gtype b'-1:lemma:small' | 342 | +-0.042809 Gtype b'lemma:control' |
| 343 | -0.000087 Med b'-1:lemma:g/l' | 343 | +-0.044545 O b'-1:postag:DT' |
| 344 | -0.000084 Agit b'+1:postag:NN' | 344 | +-0.050305 O b'-1:lemma:rna' |
| 345 | -0.000056 O b'+1:lemma:ChIP-Seq' | 345 | +-0.052149 Supp b'-1:postag:NN' |
| 346 | -0.000053 Supp b'-1:lemma:1g/l' | 346 | +-0.059299 O b'lemma:paraquat' |
| 347 | -0.000051 O b'lemma:hour' | 347 | +-0.061867 Med b'-1:postag:NN' |
| 348 | -0.000051 Gtype b'lemma:cra' | 348 | +-0.063794 O b'-1:lemma:mm' |
| 349 | -0.000036 OD b'lemma:and' | 349 | +-0.064411 OD b'+1:lemma:and' |
| 350 | -0.000021 Temp b'lemma:-lrb-' | 350 | +-0.065739 Supp b'-1:postag:JJ' |
| 351 | -0.000021 Temp b'postag:-LRB-' | 351 | +-0.067296 Med b'-1:postag:CD' |
| 352 | -0.000019 O b'-1:lemma:l2' | 352 | +-0.068394 Air b'-1:postag:CC' |
| 353 | -0.000014 Technique b'+1:lemma:-rrb-' | 353 | +-0.071978 O b'+1:lemma:-rrb-' |
| 354 | -0.000014 Technique b'+1:postag:-RRB-' | 354 | +-0.072542 Phase b'-1:lemma:at' |
| 355 | -0.000007 Gtype b'lemma:small' | 355 | +-0.072594 O b'+1:lemma:5' |
| 356 | --0.000002 Gversion b'-1:postag:NN' | 356 | +-0.073614 Phase b'+1:postag:NN' |
| 357 | --0.000046 O b'-1:lemma:g/l' | 357 | +-0.074214 O b'+1:lemma:-lcb-' |
| 358 | --0.000070 Supp b'-1:lemma:and' | 358 | +-0.078588 O b'+1:lemma:delta' |
| 359 | --0.000073 O b'-1:lemma:1' | 359 | +-0.080091 O b'-1:lemma:the' |
| 360 | --0.000129 Med b'postag:CD' | 360 | +-0.084524 O b'-1:lemma:of' |
| 361 | --0.000455 O b'-1:lemma:20' | 361 | +-0.084670 O b'-1:lemma:fresh' |
| 362 | --0.000511 OD b'+1:postag:-LRB-' | 362 | +-0.092681 Gtype b'+1:lemma:cra' |
| 363 | --0.000708 OD b'+1:postag:NNS' | 363 | +-0.094545 Air b'-1:lemma:or' |
| 364 | --0.000735 Gtype b'postag:CD' | 364 | +-0.098369 O b'lemma:o2' |
| 365 | --0.000807 Gtype b'+1:postag:NNS' | 365 | +-0.102102 Air b'postag:CD' |
| 366 | --0.000867 O b'+1:postag:CD' | 366 | +-0.103275 OD b'postag:JJ' |
| 367 | --0.000974 Gtype b'-1:postag:CD' | 367 | +-0.104224 O b'-1:lemma:with' |
| 368 | --0.001057 O b'+1:lemma:~' | 368 | +-0.110720 Supp b'lemma:and' |
| 369 | --0.001061 O b'+1:lemma:fnr' | 369 | +-0.116486 O b'lemma:mg/ml' |
| 370 | --0.001528 Air b'+1:lemma:70' | 370 | +-0.116486 O b'-1:lemma:150' |
| 371 | --0.001678 O b'-1:lemma:the' | 371 | +-0.117260 Technique b'-1:lemma::' |
| 372 | --0.001682 O b'postag:VBP' | 372 | +-0.123127 Med b'postag:-LRB-' |
| 373 | --0.002024 O b'+1:lemma:min' | 373 | +-0.125962 O b'-1:lemma:affinity' |
| 374 | --0.002325 Phase b'-1:postag:NN' | 374 | +-0.126151 Med b'lemma:-lrb-' |
| 375 | --0.002352 O b'lemma:n2' | 375 | +-0.132649 Supp b'-1:lemma:and' |
| 376 | --0.002519 O b'lemma:\xce\xb4fur' | 376 | +-0.137087 OD b'+1:lemma:0.4' |
| 377 | --0.002662 Air b'lemma:,' | 377 | +-0.138413 O b'-1:lemma:delta' |
| 378 | --0.002662 Air b'postag:,' | 378 | +-0.138623 O b'+1:lemma:mg1655' |
| 379 | --0.005486 Gtype b'+1:lemma:2' | 379 | +-0.144390 O b'lemma:medium' |
| 380 | --0.006088 O b'+1:lemma:o2' | 380 | +-0.147406 O b'lemma:e.' |
| 381 | --0.006828 Air b'-1:lemma:and' | 381 | +-0.149940 O b'-1:postag:VBN' |
| 382 | --0.008457 Temp b'-1:lemma:\xc2\xb0c' | 382 | +-0.171711 O b'-1:postag:IN' |
| 383 | --0.009847 O b'-1:lemma:,' | 383 | +-0.171840 O b'+1:lemma:mm' |
| 384 | --0.009847 O b'-1:postag:,' | 384 | +-0.172335 O b'-1:lemma:iptg' |
| 385 | --0.010744 O b'+1:lemma:phase' | 385 | +-0.172927 O b'lemma:pahse' |
| 386 | --0.011644 O b'lemma:cell' | 386 | +-0.174410 O b'-1:lemma:e.' |
| 387 | --0.011902 Gtype b'-1:postag:NNP' | 387 | +-0.180259 O b'+1:lemma:0.4' |
| 388 | --0.013075 OD b'+1:lemma:and' | 388 | +-0.184212 Gtype b'-1:postag:DT' |
| 389 | --0.013273 O b'-1:lemma:\xe2\x88\x86' | 389 | +-0.192140 O b'lemma:aerobically' |
| 390 | --0.013803 O b'lemma:e.' | 390 | +-0.195145 O b'-1:lemma:20' |
| 391 | --0.013807 O b'-1:lemma:sample' | 391 | +-0.196338 O b'-1:lemma:-lrb-' |
| 392 | --0.013821 O b'+1:lemma:mm' | 392 | +-0.202283 O b'+1:lemma:shake' |
| 393 | --0.014710 O b'+1:lemma:rep1' | 393 | +-0.203197 O b'lemma:co2' |
| 394 | --0.015201 Air b'+1:lemma:-lrb-' | 394 | +-0.203279 O b'+1:lemma:antibody' |
| 395 | --0.015350 OD b'+1:postag:CD' | 395 | +-0.217474 Gversion b'+1:postag:NN' |
| 396 | --0.017836 O b'+1:lemma:grow' | 396 | +-0.221749 O b'-1:lemma:o2' |
| 397 | --0.019975 O b'lemma:anaerobic' | 397 | +-0.225204 Supp b'+1:postag:IN' |
| 398 | --0.024268 Air b'+1:postag:CD' | 398 | +-0.227101 O b'lemma:n2' |
| 399 | --0.025672 O b'lemma:medium' | 399 | +-0.229126 O b'+1:lemma:.' |
| 400 | --0.025888 O b'+1:lemma:95' | 400 | +-0.229126 O b'+1:postag:.' |
| 401 | --0.026118 O b'lemma:k-12' | 401 | +-0.229774 Gtype b'postag:CD' |
| 402 | --0.027112 O b'+1:lemma:25' | 402 | +-0.229916 O b'+1:lemma:minimal' |
| 403 | --0.029447 Air b'postag:CC' | 403 | +-0.234531 Gtype b'-1:postag:CD' |
| 404 | --0.030441 O b'lemma:m63' | 404 | +-0.235270 Supp b'-1:postag:NNP' |
| 405 | --0.030598 OD b'+1:postag:CC' | 405 | +-0.241460 O b'-1:lemma:n2' |
| 406 | --0.032367 O b'lemma:grow' | 406 | +-0.246278 Supp b'-1:postag:VBG' |
| 407 | --0.035584 Air b'+1:postag:-LRB-' | 407 | +-0.247884 O b'-1:lemma:mid-log' |
| 408 | --0.039003 O b'lemma:mg/ml' | 408 | +-0.249629 O b'lemma:grow' |
| 409 | --0.039003 O b'-1:lemma:150' | 409 | +-0.256652 Anti b'+1:postag:JJ' |
| 410 | --0.041109 O b'-1:lemma:e.' | 410 | +-0.258827 O b'-1:postag:-LRB-' |
| 411 | --0.043248 Supp b'-1:postag:NN' | 411 | +-0.259766 OD b'+1:lemma:mid-log' |
| 412 | --0.049539 Gversion b'+1:postag:NN' | 412 | +-0.260676 O b'lemma:30' |
| 413 | --0.050421 O b'lemma:25' | 413 | +-0.262198 O b'lemma:lb' |
| 414 | --0.053998 Temp b'postag:JJ' | 414 | +-0.264023 Med b'+1:postag:NN' |
| 415 | --0.060680 O b'-1:lemma:at' | 415 | +-0.264423 O b'postag:RB' |
| 416 | --0.060890 Phase b'-1:postag:JJ' | 416 | +-0.274539 O b'+1:lemma:b' |
| 417 | --0.061474 O b'lemma:lb' | 417 | +-0.274643 O b'+1:lemma:rep1' |
| 418 | --0.064297 Med b'-1:postag:NN' | 418 | +-0.276742 O b'-1:lemma:um' |
| 419 | --0.065687 O b'-1:postag:VBN' | 419 | +-0.276742 O b'+1:lemma:paraquat' |
| 420 | --0.067931 O b'-1:lemma:o2' | 420 | +-0.279342 Med b'+1:postag:NNS' |
| 421 | --0.068731 O b'+1:lemma:5' | 421 | +-0.286088 O b'+1:lemma:phase' |
| 422 | --0.069126 O b'+1:lemma:shake' | 422 | +-0.286355 O b'lemma:nacl' |
| 423 | --0.069173 O b'-1:lemma:25' | 423 | +-0.288644 Med b'postag:CD' |
| 424 | --0.071503 Air b'-1:postag:CC' | 424 | +-0.291831 Temp b'postag:JJ' |
| 425 | --0.075779 O b'+1:lemma:0.4' | 425 | +-0.292363 O b'+1:lemma:or' |
| 426 | --0.077365 Air b'-1:lemma:or' | 426 | +-0.292909 O b'+1:lemma:_' |
| 427 | --0.080349 O b'lemma:30' | 427 | +-0.309719 O b'-1:lemma:minimal' |
| 428 | --0.087136 O b'-1:lemma:mm' | 428 | +-0.310879 O b'lemma:minimal' |
| 429 | --0.089014 pH b'postag:NN' | 429 | +-0.316065 O b'-1:lemma:0.1' |
| 430 | --0.089177 O b'lemma:o2' | 430 | +-0.317315 O b'lemma:glucose' |
| 431 | --0.097371 Supp b'lemma:and' | 431 | +-0.331509 O b'lemma:\xc2\xb0c' |
| 432 | --0.101711 Gtype b'-1:postag:DT' | 432 | +-0.335559 O b'-1:lemma:from' |
| 433 | --0.104337 O b'+1:lemma:antibody' | 433 | +-0.337031 Gtype b'lemma:_' |
| 434 | --0.113298 O b'-1:lemma:um' | 434 | +-0.367204 O b'-1:lemma:od600' |
| 435 | --0.113298 O b'+1:lemma:paraquat' | 435 | +-0.376428 O b'+1:lemma:Aerobic' |
| 436 | --0.118293 Phase b'+1:postag:NN' | 436 | +-0.392320 Supp b'postag:CC' |
| 437 | --0.119989 O b'-1:lemma:30' | 437 | +-0.394063 Med b'-1:postag:IN' |
| 438 | --0.126122 Phase b'-1:lemma:at' | 438 | +-0.397299 O b'-1:lemma:g/l' |
| 439 | --0.135089 Supp b'postag:CC' | 439 | +-0.400353 O b'+1:postag:IN' |
| 440 | --0.137129 O b'-1:postag:IN' | 440 | +-0.411740 O b'+1:postag:-RRB-' |
| 441 | --0.138660 O b'+1:lemma:arginine' | 441 | +-0.414297 Supp b'+1:lemma:glucose' |
| 442 | --0.139143 O b'+1:lemma:until' | 442 | +-0.417115 O b'-1:lemma:grow' |
| 443 | --0.162860 O b'lemma:150' | 443 | +-0.434939 O b'+1:lemma:cell' |
| 444 | --0.162860 O b'+1:lemma:mg/ml' | 444 | +-0.455419 Technique b'-1:postag::' |
| 445 | --0.164772 OD b'postag:JJ' | 445 | +-0.464919 O b'+1:lemma:dissolve' |
| 446 | --0.171975 Temp b'postag:NN' | 446 | +-0.465860 O b'+1:lemma:%' |
| 447 | --0.183842 O b'lemma:phase' | 447 | +-0.466338 O b'+1:lemma:until' |
| 448 | --0.184042 O b'+1:lemma:-rrb-' | 448 | +-0.481860 O b'-1:lemma:rifampicin' |
| 449 | --0.185930 O b'-1:lemma:-lrb-' | 449 | +-0.483707 pH b'postag:NN' |
| 450 | --0.185933 O b'-1:lemma:rifampicin' | 450 | +-0.485247 Gtype b'-1:postag:SYM' |
| 451 | --0.195035 Med b'-1:postag:IN' | 451 | +-0.501917 Gtype b'lemma:delta' |
| 452 | --0.204004 Anti b'+1:postag:JJ' | 452 | +-0.503189 O b'lemma:mg1655' |
| 453 | --0.210272 Gtype b'lemma:delta' | 453 | +-0.508938 Gtype b'+1:lemma:\xe2\x88\x86' |
| 454 | --0.217084 Supp b'+1:postag:VBN' | 454 | +-0.518932 OD b'+1:postag:NN' |
| 455 | --0.218515 O b'lemma:co2' | 455 | +-0.534335 O b'-1:lemma:until' |
| 456 | --0.219042 O b'-1:lemma:of' | 456 | +-0.547846 Supp b'+1:postag:VBN' |
| 457 | --0.220276 O b'+1:lemma:%' | 457 | +-0.575194 O b'-1:lemma:cra' |
| 458 | --0.228465 Med b'+1:postag:NN' | 458 | +-0.583475 OD b'lemma:-lrb-' |
| 459 | --0.229909 O b'-1:lemma:n2' | 459 | +-0.585808 Supp b'+1:lemma:rifampicin' |
| 460 | --0.230847 OD b'+1:postag:NN' | 460 | +-0.587062 Med b'+1:postag:IN' |
| 461 | --0.248221 O b'-1:lemma:ml' | 461 | +-0.591031 O b'lemma:phase' |
| 462 | --0.250359 Anti b'+1:lemma:anti-fur' | 462 | +-0.604967 O b'-1:lemma:\xe2\x88\x86' |
| 463 | --0.279734 O b'+1:lemma:0.3' | 463 | +-0.607989 O b'lemma:m63' |
| 464 | --0.283648 O b'-1:postag:-LRB-' | 464 | +-0.609363 O b'+1:lemma:300' |
| 465 | --0.286892 O b'-1:lemma:mid-log' | 465 | +-0.622369 Temp b'-1:lemma:\xc2\xb0c' |
| 466 | --0.312152 Gtype b'-1:postag:NN' | 466 | +-0.627260 Temp b'postag:NN' |
| 467 | --0.322232 O b'-1:lemma:0.1' | 467 | +-0.639822 O b'lemma:od600' |
| 468 | --0.331861 O b'+1:postag:-RRB-' | 468 | +-0.640212 O b'lemma:150' |
| 469 | --0.336159 O b'-1:lemma:from' | 469 | +-0.640212 O b'+1:lemma:mg/ml' |
| 470 | --0.340286 Med b'+1:postag:IN' | 470 | +-0.652984 OD b'postag:-LRB-' |
| 471 | --0.341633 O b'+1:postag:IN' | 471 | +-0.673873 Temp b'+1:lemma:to' |
| 472 | --0.355453 O b'-1:lemma:cra' | 472 | +-0.673873 Temp b'+1:postag:TO' |
| 473 | --0.366315 O b'+1:lemma:.' | 473 | +-0.674063 O b'+1:lemma:c' |
| 474 | --0.366315 O b'+1:postag:.' | 474 | +-0.677850 O b'lemma:purify' |
| 475 | --0.376920 O b'postag:RB' | 475 | +-0.683914 O b'lemma:of' |
| 476 | --0.405053 O b'lemma:\xe2\x88\x86' | 476 | +-0.689091 O b'+1:postag:NNS' |
| 477 | --0.424434 O b'+1:postag:NNS' | 477 | +-0.698464 O b'-1:lemma:1' |
| 478 | --0.430071 O b'lemma:aerobically' | 478 | +-0.705692 O b'-1:lemma:30' |
| 479 | --0.440727 Air b'postag:CD' | 479 | +-0.714318 O b'lemma:dissolve' |
| 480 | --0.446825 O b'lemma:anaerobically' | 480 | +-0.716763 O b'lemma:dpd' |
| 481 | --0.447447 O b'-1:lemma:od600' | 481 | +-0.740206 O b'+1:lemma:\xc2\xb0c' |
| 482 | --0.465924 O b'+1:lemma:cell' | 482 | +-0.752744 O b'+1:lemma:arginine' |
| 483 | --0.468267 O b'lemma:od600' | 483 | +-0.788403 Phase b'-1:postag:JJ' |
| 484 | --0.472878 O b'lemma:dissolve' | 484 | +-0.834026 O b'-1:lemma:~' |
| 485 | --0.502409 O b'lemma:20' | 485 | +-0.843212 O b'lemma:k-12' |
| 486 | --0.508433 O b'-1:lemma:~' | 486 | +-0.849778 O b'-1:lemma:co2' |
| 487 | --0.524904 Air b'-1:postag:JJ' | 487 | +-0.851042 O b'+1:lemma:0.3' |
| 488 | --0.543671 O b'+1:lemma:fecl2' | 488 | +-0.909147 O b'lemma:media' |
| 489 | --0.554628 O b'-1:lemma:0.2' | 489 | +-0.910481 Air b'-1:postag:JJ' |
| 490 | --0.556138 Temp b'+1:lemma:to' | 490 | +-0.915586 O b'lemma:20' |
| 491 | --0.556138 Temp b'+1:postag:TO' | 491 | +-0.923944 O b'lemma:\xe2\x88\x86' |
| 492 | --0.589220 Supp b'+1:lemma:rifampicin' | 492 | +-0.924668 O b'lemma:anaerobically' |
| 493 | --0.610212 O b'lemma:0.3' | 493 | +-0.929792 O b'+1:lemma:fecl2' |
| 494 | --0.622831 O b'lemma:media' | 494 | +-0.940939 Anti b'+1:lemma:anti-fur' |
| 495 | --0.657974 O b'-1:lemma:37' | 495 | +-0.942359 Supp b'-1:lemma:%' |
| 496 | --0.677014 Supp b'-1:lemma:%' | 496 | +-0.975994 O b'+1:lemma:supplement' |
| 497 | --0.678005 O b'+1:lemma:\xc2\xb0c' | 497 | +-0.981045 O b'lemma:mid-log' |
| 498 | --0.707832 O b'lemma:of' | 498 | +-0.985760 O b'-1:lemma:dissolve' |
| 499 | --0.722898 O b'-1:lemma:rpob' | 499 | +-0.985760 O b'+1:lemma:methanol' |
| 500 | --0.723244 O b'+1:lemma:+' | 500 | +-0.991880 O b'lemma:anaerobic' |
| 501 | --0.755790 OD b'lemma:-lrb-' | 501 | +-1.004133 O b'-1:lemma:0.2' |
| 502 | --0.789730 O b'lemma:0.2' | 502 | +-1.047975 O b'-1:postag:VBG' |
| 503 | --0.814406 O b'-1:lemma:grow' | 503 | +-1.056100 O b'lemma:\xce\xb4fur' |
| 504 | --0.909402 O b'-1:postag::' | 504 | +-1.058032 O b'lemma:2h' |
| 505 | --0.915529 O b'-1:postag:VBG' | 505 | +-1.058032 O b'-1:lemma:additional' |
| 506 | --0.926818 Technique b'-1:postag::' | 506 | +-1.065496 O b'lemma:0.3' |
| 507 | --0.933497 OD b'postag:-LRB-' | 507 | +-1.108652 O b'lemma:0.1' |
| 508 | --0.980631 O b'lemma:fecl2' | 508 | +-1.114961 O b'+1:postag:VBG' |
| 509 | --1.017727 O b'-1:lemma:dissolve' | 509 | +-1.137551 Supp b'+1:lemma:acetate' |
| 510 | --1.017727 O b'+1:lemma:methanol' | 510 | +-1.154485 O b'lemma:0.2' |
| 511 | --1.020513 O b'lemma:2h' | 511 | +-1.248669 O b'+1:lemma:at' |
| 512 | --1.020513 O b'-1:lemma:additional' | 512 | +-1.249902 O b'lemma:fecl2' |
| 513 | --1.034839 O b'lemma:37' | 513 | +-1.259624 O b'-1:lemma:rpob' |
| 514 | --1.121637 O b'lemma:0.1' | 514 | +-1.282405 O b'+1:lemma:in' |
| 515 | --1.205775 O b'+1:lemma:supplement' | 515 | +-1.300959 O b'postag:VBP' |
| 516 | --1.230075 Supp b'+1:lemma:acetate' | 516 | +-1.307774 O b'-1:postag::' |
| 517 | --1.250120 O b'+1:postag:VBG' | 517 | +-1.330717 Air b'+1:postag:JJ' |
| 518 | --1.256564 O b'lemma:wt' | 518 | +-1.343057 O b'+1:lemma:g/l' |
| 519 | --1.276371 O b'+1:lemma:g/l' | 519 | +-1.370626 O b'lemma:37' |
| 520 | --1.304341 O b'-1:lemma:IP' | 520 | +-1.394308 O b'-1:lemma:sample' |
| 521 | --1.328183 O b'-1:lemma:co2' | 521 | +-1.451537 O b'-1:lemma:ompr' |
| 522 | --1.391087 O b'-1:lemma:ompr' | 522 | +-1.539969 Supp b'postag:JJ' |
| 523 | --1.452522 Anti b'postag:NNP' | 523 | +-1.574060 Air b'postag:NN' |
| 524 | --1.489210 O b'+1:lemma:at' | 524 | +-1.626564 O b'lemma:rifampicin' |
| 525 | --1.603327 Air b'+1:postag:JJ' | 525 | +-1.646551 Phase b'postag:JJ' |
| 526 | --1.726036 O b'lemma:mid-log' | 526 | +-1.690746 O b'-1:lemma:ml' |
| 527 | --1.737094 O b'lemma:rifampicin' | 527 | +-1.723948 Anti b'postag:NNP' |
| 528 | --1.758957 O b'-1:lemma:nsrr' | 528 | +-1.752448 O b'-1:lemma:37' |
| 529 | --1.762287 Supp b'postag:JJ' | 529 | +-1.808172 O b'-1:lemma:nsrr' |
| 530 | --1.770399 Air b'postag:NN' | 530 | +-1.877830 O b'-1:lemma:IP' |
| 531 | --1.810971 O b'+1:lemma:hour' | 531 | +-1.901078 O b'lemma:wt' |
| 532 | --2.081711 Phase b'postag:JJ' | 532 | +-1.911145 O b'+1:lemma:+' |
| 533 | --2.115674 O b'lemma:methanol' | 533 | +-2.060304 O b'-1:lemma:2' |
| 534 | --2.200974 O b'+1:lemma:in' | 534 | +-2.238911 O b'lemma:methanol' |
| 535 | --2.263160 O b'+1:lemma:2' | 535 | +-2.346827 O b'+1:lemma:2' |
| 536 | --2.388655 O b'-1:lemma:2' | 536 | +-2.515820 O b'+1:lemma:hour' |
| 537 | --2.590523 O b'+1:lemma:1' | 537 | +-2.737658 O b'+1:lemma:1' |
| 538 | --4.545984 O b'-1:lemma::' | 538 | +-3.430701 O b'-1:lemma:_' |
| 539 | --4.681648 O b'-1:lemma:_' | 539 | +-3.751199 O b'-1:lemma::' |
| 540 | 540 | ... | ... |
CRF/reports/report_Run8_v2.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.37575104918065877, 'c2': 0.014068909404949474} | ||
| 5 | +best CV score:0.8255861440832887 | ||
| 6 | +model size: 0.09M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.8259332647953259 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.652 0.405 0.500 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 1.000 1.000 1.000 22 | ||
| 14 | + Med 1.000 0.912 0.954 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.807 0.742 0.773 62 | ||
| 20 | + Anti 0.900 1.000 0.947 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.883 0.858 0.871 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.887 0.691 0.777 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.880 0.785 0.826 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 7.084434 | ||
| 32 | +Agit -> Agit 6.186786 | ||
| 33 | +Temp -> Temp 5.929541 | ||
| 34 | +Air -> Air 5.333804 | ||
| 35 | +Med -> Med 5.303931 | ||
| 36 | +Supp -> Supp 4.741743 | ||
| 37 | +Gversion -> Gversion 4.640552 | ||
| 38 | +Anti -> Anti 4.494565 | ||
| 39 | +Phase -> Phase 4.151550 | ||
| 40 | +Gtype -> Gtype 4.131202 | ||
| 41 | +Technique -> Technique 3.603317 | ||
| 42 | +O -> O 3.497598 | ||
| 43 | +pH -> pH 1.761638 | ||
| 44 | +O -> Supp 1.456972 | ||
| 45 | +Gtype -> Supp 1.262299 | ||
| 46 | +Air -> O 1.158446 | ||
| 47 | +O -> Technique 0.833897 | ||
| 48 | +OD -> Phase 0.824018 | ||
| 49 | +O -> Gtype 0.581942 | ||
| 50 | +Temp -> O 0.517869 | ||
| 51 | +Med -> O 0.476850 | ||
| 52 | +Substrain -> Gtype 0.368872 | ||
| 53 | +Supp -> O 0.290899 | ||
| 54 | +Technique -> Air 0.268494 | ||
| 55 | +O -> Anti 0.125794 | ||
| 56 | +O -> Gversion 0.041462 | ||
| 57 | +O -> OD 0.003049 | ||
| 58 | +Gtype -> Air 0.000025 | ||
| 59 | +O -> Air -0.236692 | ||
| 60 | +Gtype -> O -0.409359 | ||
| 61 | +OD -> O -0.632212 | ||
| 62 | +Med -> Supp -0.705455 | ||
| 63 | +Technique -> O -0.720532 | ||
| 64 | +Substrain -> O -0.793543 | ||
| 65 | +Agit -> O -0.912986 | ||
| 66 | + | ||
| 67 | + | ||
| 68 | +Top unlikely transitions: | ||
| 69 | +OD -> OD 7.084434 | ||
| 70 | +Agit -> Agit 6.186786 | ||
| 71 | +Temp -> Temp 5.929541 | ||
| 72 | +Air -> Air 5.333804 | ||
| 73 | +Med -> Med 5.303931 | ||
| 74 | +Supp -> Supp 4.741743 | ||
| 75 | +Gversion -> Gversion 4.640552 | ||
| 76 | +Anti -> Anti 4.494565 | ||
| 77 | +Phase -> Phase 4.151550 | ||
| 78 | +Gtype -> Gtype 4.131202 | ||
| 79 | +Technique -> Technique 3.603317 | ||
| 80 | +O -> O 3.497598 | ||
| 81 | +pH -> pH 1.761638 | ||
| 82 | +O -> Supp 1.456972 | ||
| 83 | +Gtype -> Supp 1.262299 | ||
| 84 | +Air -> O 1.158446 | ||
| 85 | +O -> Technique 0.833897 | ||
| 86 | +OD -> Phase 0.824018 | ||
| 87 | +O -> Gtype 0.581942 | ||
| 88 | +Temp -> O 0.517869 | ||
| 89 | +Med -> O 0.476850 | ||
| 90 | +Substrain -> Gtype 0.368872 | ||
| 91 | +Supp -> O 0.290899 | ||
| 92 | +Technique -> Air 0.268494 | ||
| 93 | +O -> Anti 0.125794 | ||
| 94 | +O -> Gversion 0.041462 | ||
| 95 | +O -> OD 0.003049 | ||
| 96 | +Gtype -> Air 0.000025 | ||
| 97 | +O -> Air -0.236692 | ||
| 98 | +Gtype -> O -0.409359 | ||
| 99 | +OD -> O -0.632212 | ||
| 100 | +Med -> Supp -0.705455 | ||
| 101 | +Technique -> O -0.720532 | ||
| 102 | +Substrain -> O -0.793543 | ||
| 103 | +Agit -> O -0.912986 | ||
| 104 | + | ||
| 105 | + | ||
| 106 | +Top positive: | ||
| 107 | +5.026788 Anti b'-2:lemma:antibody' | ||
| 108 | +4.581170 O b'word[:2]:re' | ||
| 109 | +4.532914 O b'-2:lemma:_' | ||
| 110 | +4.141075 Technique b'word[:2]:Ch' | ||
| 111 | +4.000190 Air b'lemma:anaerobic' | ||
| 112 | +3.925942 O b'word[:2]:Rp' | ||
| 113 | +3.588650 O b'lemma:1' | ||
| 114 | +3.588650 O b'word:1' | ||
| 115 | +3.545521 O b'postag::' | ||
| 116 | +3.537943 O b'postag:IN' | ||
| 117 | +3.493406 O b'+2:lemma:\xc2\xb0c' | ||
| 118 | +3.393325 Gtype b'-2:lemma:genotype/variation' | ||
| 119 | +3.329554 O b'word:A' | ||
| 120 | +3.068046 Gtype b'word[:1]:\xce\x94' | ||
| 121 | +3.034385 O b'word[:1]:G' | ||
| 122 | +3.015992 O b'word[:1]:S' | ||
| 123 | +2.836526 Supp b'word[:2]:Fe' | ||
| 124 | +2.820630 Air b'word[:2]:Ae' | ||
| 125 | +2.820630 Air b'word:Aerobic' | ||
| 126 | +2.738575 Gtype b'word[:2]:Fl' | ||
| 127 | +2.722116 Air b'word[:1]:A' | ||
| 128 | +2.638126 Temp b'word[:1]:3' | ||
| 129 | +2.523318 O b'lemma:3' | ||
| 130 | +2.523318 O b'word:3' | ||
| 131 | +2.522986 O b'postag:CC' | ||
| 132 | +2.473237 O b'lemma:2' | ||
| 133 | +2.473237 O b'word:2' | ||
| 134 | +2.468222 O b'postag:VBN' | ||
| 135 | +2.391799 Gtype b'-2:lemma:delta' | ||
| 136 | +2.346345 O b'word[:1]:B' | ||
| 137 | +2.285720 Gtype b'lemma:type' | ||
| 138 | +2.285720 Gtype b'word[:2]:ty' | ||
| 139 | +2.285720 Gtype b'word:type' | ||
| 140 | +2.284112 Gtype b'+2:lemma:glucose' | ||
| 141 | +2.211360 Technique b'word[:2]:RN' | ||
| 142 | +2.182686 O b'+1:postag:RB' | ||
| 143 | +2.177098 O b'postag:DT' | ||
| 144 | +2.169923 Phase b'lemma:stationary' | ||
| 145 | +2.169923 Phase b'word:stationary' | ||
| 146 | +2.155319 Anti b'+2:lemma:antibody' | ||
| 147 | +2.151791 O b'lemma:.' | ||
| 148 | +2.151791 O b'postag:.' | ||
| 149 | +2.151791 O b'word:.' | ||
| 150 | +2.145140 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 151 | +2.145140 Gtype b'-1:word:\xe2\x88\x86' | ||
| 152 | +2.134554 Supp b'-2:lemma:supplement' | ||
| 153 | +2.134313 O b'-1:word:Aerobic' | ||
| 154 | +2.089564 OD b'word[:2]:OD' | ||
| 155 | +2.068607 Supp b'lemma:arginine' | ||
| 156 | +2.061542 O b'isLower' | ||
| 157 | +2.024477 Supp b'lemma:nitrate' | ||
| 158 | +2.024477 Supp b'word[:2]:ni' | ||
| 159 | +2.024477 Supp b'word:nitrate' | ||
| 160 | +1.995233 O b'word[:2]:ge' | ||
| 161 | +1.977149 O b'-1:lemma:tag' | ||
| 162 | +1.954967 O b'+2:lemma:cra' | ||
| 163 | +1.948541 O b'+2:lemma:fructose' | ||
| 164 | +1.925028 Med b'word[:1]:L' | ||
| 165 | +1.908907 Med b'word[:1]:M' | ||
| 166 | +1.872648 Supp b'word[:1]:I' | ||
| 167 | +1.862418 Med b'+2:lemma:with' | ||
| 168 | +1.818612 Phase b'lemma:mid-log' | ||
| 169 | +1.818612 Phase b'word:mid-log' | ||
| 170 | +1.808244 Temp b'-1:word:sample' | ||
| 171 | +1.800900 Supp b'+1:word:hours' | ||
| 172 | +1.794367 O b'lemma:_' | ||
| 173 | +1.794367 O b'word[:1]:_' | ||
| 174 | +1.794367 O b'word:_' | ||
| 175 | +1.771399 O b'-2:lemma:~' | ||
| 176 | +1.768285 Temp b'-1:lemma:sample' | ||
| 177 | +1.765360 OD b'word[:1]:O' | ||
| 178 | +1.739074 O b'word[:2]:ch' | ||
| 179 | +1.734592 Gtype b'word[:1]:d' | ||
| 180 | +1.733152 Supp b'-1:word:Cra' | ||
| 181 | +1.720079 O b'+1:word:ChIP-Seq' | ||
| 182 | +1.719613 O b'+1:postag:VBP' | ||
| 183 | +1.680129 Technique b'word[:1]:R' | ||
| 184 | +1.672356 O b'+2:lemma:chipseq' | ||
| 185 | +1.646401 Supp b'-1:postag:CC' | ||
| 186 | +1.634591 Air b'+2:lemma:37' | ||
| 187 | +1.616241 Gtype b'-2:postag:DT' | ||
| 188 | +1.602328 Supp b'+1:lemma:\xc2\xb5m' | ||
| 189 | +1.602328 Supp b'+1:word:\xc2\xb5M' | ||
| 190 | +1.563258 Gtype b'word[:1]:W' | ||
| 191 | +1.536685 Air b'word[:1]:a' | ||
| 192 | +1.524926 Supp b'-2:lemma:purr' | ||
| 193 | +1.515693 Air b'word[:2]:An' | ||
| 194 | +1.515693 Air b'word:Anaerobic' | ||
| 195 | +1.512353 Supp b'+2:lemma:rifampicin' | ||
| 196 | +1.503664 Med b'word[:1]:g' | ||
| 197 | +1.496011 Supp b'word[:1]:N' | ||
| 198 | +1.494242 O b'-1:lemma:anaerobic' | ||
| 199 | +1.482358 O b'-1:lemma:lb' | ||
| 200 | +1.476473 Gtype b'lemma:nsrr' | ||
| 201 | +1.476473 Gtype b'word[:2]:Ns' | ||
| 202 | +1.476473 Gtype b'word:NsrR' | ||
| 203 | +1.475408 pH b'+1:postag:CD' | ||
| 204 | +1.464474 Supp b'word[:2]:gl' | ||
| 205 | +1.459471 Air b'word[:2]:an' | ||
| 206 | +1.449561 O b'-1:word:tag' | ||
| 207 | +1.441346 O b'-2:lemma:medium' | ||
| 208 | +1.436637 Gtype b'-2:postag:NNS' | ||
| 209 | +1.405198 Phase b'-2:lemma:phase' | ||
| 210 | +1.403755 Supp b'word[:1]:\xc2\xb5' | ||
| 211 | +1.381552 Technique b'word[:1]:C' | ||
| 212 | +1.367426 O b'word[:1]:C' | ||
| 213 | +1.358817 Anti b'word[:2]:an' | ||
| 214 | +1.352736 Supp b'+1:lemma:2' | ||
| 215 | +1.352736 Supp b'+1:word:2' | ||
| 216 | +1.338532 Technique b'symb' | ||
| 217 | +1.327081 pH b'lemma:ph5' | ||
| 218 | +1.327081 pH b'+1:lemma:.5' | ||
| 219 | +1.327081 pH b'word:pH5' | ||
| 220 | +1.327081 pH b'+1:word:.5' | ||
| 221 | +1.320139 O b'lemma:-' | ||
| 222 | +1.320139 O b'word:-' | ||
| 223 | +1.312227 OD b'word[:2]:0.' | ||
| 224 | +1.306758 Air b'-2:postag:CD' | ||
| 225 | +1.306653 Technique b'lemma:ChIP-exo' | ||
| 226 | +1.294854 Supp b'+1:lemma:1' | ||
| 227 | +1.294854 Supp b'+1:word:1' | ||
| 228 | +1.291466 Gtype b'hGreek' | ||
| 229 | +1.288351 Gtype b'lemma:wt' | ||
| 230 | +1.281820 Med b'isUpper' | ||
| 231 | +1.280384 O b'word[:2]:Cu' | ||
| 232 | +1.273897 Strain b'lemma:k-12' | ||
| 233 | +1.273897 Strain b'word[:2]:K-' | ||
| 234 | +1.273897 Strain b'word:K-12' | ||
| 235 | +1.263759 Supp b'lemma:pq' | ||
| 236 | +1.263759 Supp b'word[:2]:PQ' | ||
| 237 | +1.263759 Supp b'word:PQ' | ||
| 238 | +1.262897 Gversion b'postag:CD' | ||
| 239 | +1.260684 Substrain b'lemma:mg1655' | ||
| 240 | +1.260684 Substrain b'word[:2]:MG' | ||
| 241 | +1.260684 Substrain b'word:MG1655' | ||
| 242 | +1.257247 Med b'+2:lemma:b2' | ||
| 243 | +1.250577 Gtype b'word[:2]:cr' | ||
| 244 | +1.245268 Supp b'lemma:Iron' | ||
| 245 | +1.245268 Supp b'word[:2]:Ir' | ||
| 246 | +1.245268 Supp b'word:Iron' | ||
| 247 | +1.245268 Supp b'+1:word:Deficient' | ||
| 248 | +1.245268 Supp b'-2:lemma:Anaerobic' | ||
| 249 | +1.242618 Gtype b'postag:JJ' | ||
| 250 | +1.229834 Gversion b'lemma:chip-seq' | ||
| 251 | +1.223343 O b'+2:postag:JJ' | ||
| 252 | +1.202557 O b'lemma:a' | ||
| 253 | +1.198655 Gtype b'+1:lemma:type' | ||
| 254 | +1.198655 Gtype b'+1:word:type' | ||
| 255 | +1.198344 Strain b'word[:1]:K' | ||
| 256 | +1.192715 Gtype b'lemma:\xe2\x88\x86' | ||
| 257 | +1.192715 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 258 | +1.192715 Gtype b'word:\xe2\x88\x86' | ||
| 259 | +1.191305 O b'+2:lemma:of' | ||
| 260 | +1.187697 Med b'lemma:MOPS' | ||
| 261 | +1.187697 Med b'word[:2]:MO' | ||
| 262 | +1.187697 Med b'word:MOPS' | ||
| 263 | +1.171501 Substrain b'word[:1]:M' | ||
| 264 | +1.171059 Air b'postag:RB' | ||
| 265 | +1.169190 Med b'word[:2]:LB' | ||
| 266 | +1.169190 Med b'word:LB' | ||
| 267 | +1.154631 Gversion b'word:ChIP-Seq' | ||
| 268 | +1.142086 O b'isNumber' | ||
| 269 | +1.141002 Gversion b'-2:lemma:build' | ||
| 270 | +1.140702 Gtype b'-2:lemma:genotype' | ||
| 271 | +1.126546 Technique b'+2:lemma:ph5' | ||
| 272 | +1.113495 O b'+1:postag:NNP' | ||
| 273 | +1.108444 O b'-2:lemma:fructose' | ||
| 274 | +1.100127 O b'-2:lemma:co2' | ||
| 275 | +1.093797 O b'-2:lemma:\xe2\x88\x86' | ||
| 276 | +1.087633 Supp b'+1:lemma:_' | ||
| 277 | +1.087633 Supp b'+1:word:_' | ||
| 278 | +1.087387 O b'word[:1]:H' | ||
| 279 | +1.079339 Anti b'+1:lemma:antibody' | ||
| 280 | +1.079339 Anti b'+1:word:antibody' | ||
| 281 | +1.053803 Supp b'lemma:acetate' | ||
| 282 | +1.053803 Supp b'word:acetate' | ||
| 283 | +1.052666 Supp b'-1:postag:CD' | ||
| 284 | +1.041028 Anti b'-2:lemma:polymerase' | ||
| 285 | +1.026459 O b'+1:postag:VBN' | ||
| 286 | +1.021797 O b'-2:lemma:mid-log' | ||
| 287 | +1.014372 Gtype b'-1:lemma:rpob' | ||
| 288 | +1.014372 Gtype b'-1:word:RpoB' | ||
| 289 | +0.999828 O b'+1:postag:VBZ' | ||
| 290 | +0.999620 Gversion b'+1:postag:CD' | ||
| 291 | +0.998043 O b'word[:2]:Cr' | ||
| 292 | +0.998043 O b'word:Cra' | ||
| 293 | +0.994250 Supp b'word[:2]:0.' | ||
| 294 | +0.985843 O b'lemma:purr' | ||
| 295 | +0.985843 O b'word:PurR' | ||
| 296 | +0.983781 Supp b'word[:1]:1' | ||
| 297 | +0.980764 Gtype b'-2:postag::' | ||
| 298 | +0.978629 O b'lemma:b' | ||
| 299 | +0.978629 O b'word:B' | ||
| 300 | +0.978589 O b'-1:lemma:media' | ||
| 301 | +0.978589 O b'-1:word:media' | ||
| 302 | +0.978508 O b'lemma:at' | ||
| 303 | +0.969017 O b'word[:1]:c' | ||
| 304 | +0.967404 O b'word[:1]:R' | ||
| 305 | +0.958802 O b'word[:1]:E' | ||
| 306 | +0.953468 O b'+1:postag::' | ||
| 307 | + | ||
| 308 | + | ||
| 309 | +Top negative: | ||
| 310 | +-0.052044 O b'+1:lemma:-rrb-' | ||
| 311 | +-0.052044 O b'+1:word:-RRB-' | ||
| 312 | +-0.056554 O b'word[:2]:ce' | ||
| 313 | +-0.060548 Phase b'-2:postag:NN' | ||
| 314 | +-0.062690 Supp b'+2:lemma:glucose' | ||
| 315 | +-0.064571 Agit b'symb' | ||
| 316 | +-0.065267 O b'+1:lemma:_' | ||
| 317 | +-0.065267 O b'+1:word:_' | ||
| 318 | +-0.068598 O b'-1:lemma:rpob' | ||
| 319 | +-0.068598 O b'-1:word:RpoB' | ||
| 320 | +-0.068684 Gtype b'lemma:_' | ||
| 321 | +-0.068684 Gtype b'word[:1]:_' | ||
| 322 | +-0.068684 Gtype b'word:_' | ||
| 323 | +-0.074203 Air b'+2:lemma:and' | ||
| 324 | +-0.074727 O b'-1:lemma:iptg' | ||
| 325 | +-0.074727 O b'-1:word:IPTG' | ||
| 326 | +-0.074850 OD b'+1:postag:CD' | ||
| 327 | +-0.077216 O b'+2:lemma:+' | ||
| 328 | +-0.078067 Temp b'+2:lemma:to' | ||
| 329 | +-0.078067 Temp b'+2:postag:TO' | ||
| 330 | +-0.079117 O b'+2:lemma:mg1655' | ||
| 331 | +-0.079758 O b'word[:2]:30' | ||
| 332 | +-0.080740 Anti b'+2:postag:JJ' | ||
| 333 | +-0.083302 Air b'-1:postag:RB' | ||
| 334 | +-0.083969 O b'-2:lemma:anaerobically' | ||
| 335 | +-0.084742 Supp b'isNumber' | ||
| 336 | +-0.086180 O b'+2:lemma:anaerobically' | ||
| 337 | +-0.092175 O b'-2:postag:-LRB-' | ||
| 338 | +-0.095060 O b'word[:1]:F' | ||
| 339 | +-0.097644 Air b'postag:CC' | ||
| 340 | +-0.099744 O b'lemma:k-12' | ||
| 341 | +-0.099744 O b'word[:2]:K-' | ||
| 342 | +-0.099744 O b'word:K-12' | ||
| 343 | +-0.106457 O b'lemma:media' | ||
| 344 | +-0.106457 O b'word:media' | ||
| 345 | +-0.108219 O b'+1:lemma:until' | ||
| 346 | +-0.108219 O b'+1:word:until' | ||
| 347 | +-0.108963 Supp b'lemma:2' | ||
| 348 | +-0.108963 Supp b'word:2' | ||
| 349 | +-0.110990 OD b'+1:postag:IN' | ||
| 350 | +-0.111975 Gtype b'-1:postag:NN' | ||
| 351 | +-0.112503 O b'+1:word:cells' | ||
| 352 | +-0.113137 Gtype b'-1:lemma:,' | ||
| 353 | +-0.113137 Gtype b'-1:postag:,' | ||
| 354 | +-0.113137 Gtype b'-1:word:,' | ||
| 355 | +-0.116950 O b'-1:lemma:37' | ||
| 356 | +-0.116950 O b'-1:word:37' | ||
| 357 | +-0.117677 O b'-1:word:the' | ||
| 358 | +-0.120669 O b'+1:lemma:supplement' | ||
| 359 | +-0.120669 O b'+1:word:supplemented' | ||
| 360 | +-0.121823 O b'+1:postag:-RRB-' | ||
| 361 | +-0.121829 O b'word[:1]:p' | ||
| 362 | +-0.129179 O b'+2:lemma:-rrb-' | ||
| 363 | +-0.130177 O b'-1:lemma:mid-log' | ||
| 364 | +-0.130177 O b'-1:word:mid-log' | ||
| 365 | +-0.133448 O b'-1:lemma:the' | ||
| 366 | +-0.133564 O b'word[:2]:Fe' | ||
| 367 | +-0.134575 O b'+1:lemma:cell' | ||
| 368 | +-0.135676 O b'-1:lemma:nsrr' | ||
| 369 | +-0.135676 O b'-1:word:NsrR' | ||
| 370 | +-0.136278 Med b'-2:lemma:grow' | ||
| 371 | +-0.137702 OD b'-2:postag:JJ' | ||
| 372 | +-0.138850 O b'+2:lemma:a' | ||
| 373 | +-0.139158 O b'postag:NN' | ||
| 374 | +-0.141309 Air b'-2:postag:RB' | ||
| 375 | +-0.142269 Temp b'-2:postag:NN' | ||
| 376 | +-0.150696 Air b'-2:postag:CC' | ||
| 377 | +-0.152422 OD b'postag:CD' | ||
| 378 | +-0.155346 Gtype b'isNumber' | ||
| 379 | +-0.157347 O b'lemma:phase' | ||
| 380 | +-0.157347 O b'word:phase' | ||
| 381 | +-0.158371 Supp b'hGreek' | ||
| 382 | +-0.162404 O b'+2:lemma:medium' | ||
| 383 | +-0.163618 O b'-2:postag:-RRB-' | ||
| 384 | +-0.166539 O b'+2:postag:RB' | ||
| 385 | +-0.168007 Supp b'+2:postag:NNS' | ||
| 386 | +-0.169738 O b'lemma:of' | ||
| 387 | +-0.169738 O b'word[:2]:of' | ||
| 388 | +-0.169738 O b'word:of' | ||
| 389 | +-0.172303 O b'+2:lemma:.' | ||
| 390 | +-0.172303 O b'+2:postag:.' | ||
| 391 | +-0.172600 O b'-1:lemma:sample' | ||
| 392 | +-0.178258 O b'+1:word:hours' | ||
| 393 | +-0.185213 Anti b'+2:lemma:polyclonal' | ||
| 394 | +-0.186446 O b'word[:2]:OD' | ||
| 395 | +-0.187064 O b'+1:lemma:g/l' | ||
| 396 | +-0.187064 O b'+1:word:g/L' | ||
| 397 | +-0.189574 O b'lemma:2h' | ||
| 398 | +-0.189574 O b'-1:lemma:additional' | ||
| 399 | +-0.189574 O b'word[:2]:2h' | ||
| 400 | +-0.189574 O b'word:2h' | ||
| 401 | +-0.189574 O b'-1:word:additional' | ||
| 402 | +-0.189977 O b'-1:postag:-LRB-' | ||
| 403 | +-0.192454 O b'+1:lemma:.' | ||
| 404 | +-0.192454 O b'+1:postag:.' | ||
| 405 | +-0.192454 O b'+1:word:.' | ||
| 406 | +-0.198550 Gtype b'+2:lemma:,' | ||
| 407 | +-0.198550 Gtype b'+2:postag:,' | ||
| 408 | +-0.199077 Supp b'+2:lemma:-rrb-' | ||
| 409 | +-0.209538 Supp b'+2:postag:-RRB-' | ||
| 410 | +-0.216556 O b'lemma:methanol' | ||
| 411 | +-0.216556 O b'word:methanol' | ||
| 412 | +-0.216556 O b'-2:lemma:dissolve' | ||
| 413 | +-0.222399 O b'+2:lemma:b' | ||
| 414 | +-0.230362 Supp b'-2:postag:JJ' | ||
| 415 | +-0.230473 O b'-1:lemma:dissolve' | ||
| 416 | +-0.230473 O b'+1:lemma:methanol' | ||
| 417 | +-0.230473 O b'-1:word:dissolved' | ||
| 418 | +-0.230473 O b'+1:word:methanol' | ||
| 419 | +-0.246071 Temp b'postag:NN' | ||
| 420 | +-0.253325 O b'-1:lemma:grow' | ||
| 421 | +-0.262317 Temp b'isLower' | ||
| 422 | +-0.263799 O b'word[:2]:gl' | ||
| 423 | +-0.265145 OD b'isLower' | ||
| 424 | +-0.271959 O b'-2:lemma:50' | ||
| 425 | +-0.277605 O b'-2:postag:RB' | ||
| 426 | +-0.294527 O b'+2:lemma:rifampicin' | ||
| 427 | +-0.296283 Supp b'isUpper' | ||
| 428 | +-0.303601 O b'+1:postag:VBG' | ||
| 429 | +-0.305609 Gtype b'postag:NNP' | ||
| 430 | +-0.306835 O b'-2:postag:DT' | ||
| 431 | +-0.307435 O b'word[:2]:ri' | ||
| 432 | +-0.308156 O b'-1:lemma:co2' | ||
| 433 | +-0.308156 O b'-1:word:CO2' | ||
| 434 | +-0.308934 Med b'+1:postag:NN' | ||
| 435 | +-0.312777 O b'-1:postag:IN' | ||
| 436 | +-0.331437 O b'-2:lemma:a' | ||
| 437 | +-0.342737 O b'word[:1]:K' | ||
| 438 | +-0.345243 Anti b'+1:lemma:anti-fur' | ||
| 439 | +-0.345243 Anti b'+1:word:anti-Fur' | ||
| 440 | +-0.357708 Agit b'hUpper' | ||
| 441 | +-0.357708 Agit b'hLower' | ||
| 442 | +-0.360267 Supp b'word[:2]:an' | ||
| 443 | +-0.374118 O b'+1:postag:NNS' | ||
| 444 | +-0.375266 O b'-2:postag:VBG' | ||
| 445 | +-0.382105 Phase b'postag:JJ' | ||
| 446 | +-0.396801 Med b'symb' | ||
| 447 | +-0.399800 O b'word[:1]:g' | ||
| 448 | +-0.401641 Med b'-2:postag:NNP' | ||
| 449 | +-0.404890 OD b'+1:postag:NN' | ||
| 450 | +-0.415691 Phase b'hUpper' | ||
| 451 | +-0.415691 Phase b'hLower' | ||
| 452 | +-0.419849 O b'lemma:rifampicin' | ||
| 453 | +-0.419849 O b'word:rifampicin' | ||
| 454 | +-0.451527 O b'word[:1]:N' | ||
| 455 | +-0.494122 Supp b'+2:lemma:2' | ||
| 456 | +-0.511421 OD b'+2:postag:NN' | ||
| 457 | +-0.530842 O b'-2:lemma:supplement' | ||
| 458 | +-0.535189 O b'lemma:wt' | ||
| 459 | +-0.537729 O b'word:cells' | ||
| 460 | +-0.557817 OD b'+2:postag:CD' | ||
| 461 | +-0.562708 Med b'-1:postag:NN' | ||
| 462 | +-0.567600 O b'-2:lemma::' | ||
| 463 | +-0.588931 O b'+2:postag:-RRB-' | ||
| 464 | +-0.588979 Air b'isLower' | ||
| 465 | +-0.648905 O b'postag:RB' | ||
| 466 | +-0.650990 O b'+2:lemma:mid-log' | ||
| 467 | +-0.653045 O b'-2:lemma:rpob' | ||
| 468 | +-0.658979 Air b'-1:postag:JJ' | ||
| 469 | +-0.664709 Supp b'+2:postag:NN' | ||
| 470 | +-0.715070 O b'-1:postag:VBG' | ||
| 471 | +-0.728681 Med b'-2:postag:VBN' | ||
| 472 | +-0.764375 O b'+1:lemma:in' | ||
| 473 | +-0.764375 O b'+1:word:in' | ||
| 474 | +-0.781477 O b'word[:1]:0' | ||
| 475 | +-0.789024 OD b'isNumber' | ||
| 476 | +-0.793942 O b'lemma:mid-log' | ||
| 477 | +-0.793942 O b'word:mid-log' | ||
| 478 | +-0.808561 O b'word[:1]:\xce\x94' | ||
| 479 | +-0.808585 Med b'+1:postag:IN' | ||
| 480 | +-0.828064 O b'+1:lemma:at' | ||
| 481 | +-0.828064 O b'+1:word:at' | ||
| 482 | +-0.852882 O b'+1:postag:IN' | ||
| 483 | +-0.863301 O b'word[:1]:P' | ||
| 484 | +-0.887183 Gversion b'isLower' | ||
| 485 | +-0.892329 O b'-2:lemma:rifampicin' | ||
| 486 | +-0.892363 O b'word[:2]:me' | ||
| 487 | +-0.923638 O b'+1:lemma:2' | ||
| 488 | +-0.923638 O b'+1:word:2' | ||
| 489 | +-0.926320 O b'-1:lemma:2' | ||
| 490 | +-0.926320 O b'-1:word:2' | ||
| 491 | +-0.953731 Gtype b'isUpper' | ||
| 492 | +-0.983394 Gtype b'word[:1]:C' | ||
| 493 | +-0.991482 O b'word[:1]:d' | ||
| 494 | +-1.050165 O b'-2:lemma:phase' | ||
| 495 | +-1.081955 Supp b'symb' | ||
| 496 | +-1.100341 Anti b'postag:NNP' | ||
| 497 | +-1.101751 O b'+1:lemma:1' | ||
| 498 | +-1.101751 O b'+1:word:1' | ||
| 499 | +-1.313954 O b'-1:postag::' | ||
| 500 | +-1.342158 Technique b'postag:NN' | ||
| 501 | +-1.383899 O b'word[:2]:Ch' | ||
| 502 | +-1.392025 Supp b'postag:JJ' | ||
| 503 | +-1.498805 Air b'postag:NN' | ||
| 504 | +-1.634162 O b'-1:lemma::' | ||
| 505 | +-1.634162 O b'-1:word::' | ||
| 506 | +-2.037586 O b'-1:lemma:_' | ||
| 507 | +-2.037586 O b'-1:word:_' | ||
| 508 | +-2.050665 Supp b'+2:postag:CD' | ||
| 509 | +-3.447085 OD b'word[:1]:-' | ||
| 510 | + |
CRF/reports/report_Run8_v9.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70_v4.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.005890787510878062, 'c2': 0.06901405430753309} | ||
| 5 | +best CV score:0.800439058983579 | ||
| 6 | +model size: 0.13M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7875530357193007 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.405 0.577 37 | ||
| 12 | + pH 1.000 1.000 1.000 12 | ||
| 13 | + Technique 0.952 0.909 0.930 22 | ||
| 14 | + Med 0.889 0.842 0.865 57 | ||
| 15 | + Temp 0.818 1.000 0.900 18 | ||
| 16 | + Vess 0.000 0.000 0.000 0 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 1.000 0.895 0.944 19 | ||
| 19 | + Air 0.754 0.742 0.748 62 | ||
| 20 | + Anti 1.000 0.444 0.615 9 | ||
| 21 | + Strain 1.000 1.000 1.000 1 | ||
| 22 | + Gtype 0.862 0.764 0.810 106 | ||
| 23 | + Substrain 0.000 0.000 0.000 1 | ||
| 24 | + Supp 0.865 0.662 0.750 136 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.875 0.733 0.788 480 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 5.295300 | ||
| 32 | +Med -> Med 4.817027 | ||
| 33 | +Air -> Air 4.541687 | ||
| 34 | +Temp -> Temp 4.477980 | ||
| 35 | +Anti -> Anti 4.403961 | ||
| 36 | +Agit -> Agit 4.189406 | ||
| 37 | +O -> O 4.155711 | ||
| 38 | +Gversion -> Gversion 3.926573 | ||
| 39 | +Phase -> Phase 3.764540 | ||
| 40 | +Gtype -> Gtype 3.728193 | ||
| 41 | +Supp -> Supp 3.500024 | ||
| 42 | +Technique -> Technique 2.523454 | ||
| 43 | +pH -> pH 2.120930 | ||
| 44 | +O -> Supp 1.644804 | ||
| 45 | +Substrain -> Gtype 1.553365 | ||
| 46 | +Gtype -> Supp 1.549696 | ||
| 47 | +Air -> O 1.305073 | ||
| 48 | +O -> Gtype 1.048094 | ||
| 49 | +Technique -> Air 1.030180 | ||
| 50 | +O -> Technique 0.933161 | ||
| 51 | +O -> Temp 0.764897 | ||
| 52 | +Gtype -> pH 0.723788 | ||
| 53 | +Med -> O 0.647341 | ||
| 54 | +Gtype -> Air 0.646357 | ||
| 55 | +O -> Anti 0.639501 | ||
| 56 | +OD -> Phase 0.283925 | ||
| 57 | +O -> Strain 0.281301 | ||
| 58 | +Phase -> O 0.224883 | ||
| 59 | +O -> Gversion 0.199014 | ||
| 60 | +O -> Vess 0.165133 | ||
| 61 | +O -> pH 0.164399 | ||
| 62 | +Supp -> O 0.147494 | ||
| 63 | +Temp -> O 0.060602 | ||
| 64 | +O -> Med 0.024988 | ||
| 65 | +pH -> Vess -0.000034 | ||
| 66 | +Gversion -> Strain -0.000143 | ||
| 67 | +Agit -> Anti -0.005756 | ||
| 68 | +Strain -> Gversion -0.006189 | ||
| 69 | +Vess -> O -0.008273 | ||
| 70 | +Vess -> Technique -0.009171 | ||
| 71 | +Substrain -> Phase -0.009186 | ||
| 72 | +Temp -> Substrain -0.014198 | ||
| 73 | +Med -> Strain -0.014524 | ||
| 74 | +Vess -> Med -0.015908 | ||
| 75 | +Med -> Agit -0.017755 | ||
| 76 | +Agit -> Gversion -0.019478 | ||
| 77 | +Med -> Vess -0.019502 | ||
| 78 | +Gversion -> Agit -0.021787 | ||
| 79 | +Substrain -> Med -0.022015 | ||
| 80 | +pH -> Agit -0.023370 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Gversion -> Gtype -0.449091 | ||
| 85 | +Anti -> Supp -0.469341 | ||
| 86 | +Technique -> O -0.471772 | ||
| 87 | +Air -> Gtype -0.471801 | ||
| 88 | +OD -> Anti -0.472176 | ||
| 89 | +Med -> Air -0.493933 | ||
| 90 | +Gversion -> Supp -0.505303 | ||
| 91 | +Air -> Temp -0.514758 | ||
| 92 | +Anti -> Gtype -0.526422 | ||
| 93 | +Technique -> Gversion -0.527475 | ||
| 94 | +OD -> Supp -0.540365 | ||
| 95 | +Gversion -> Air -0.543215 | ||
| 96 | +Gversion -> Technique -0.557808 | ||
| 97 | +OD -> Technique -0.562317 | ||
| 98 | +Anti -> OD -0.572231 | ||
| 99 | +Air -> Supp -0.574414 | ||
| 100 | +Gtype -> Phase -0.589533 | ||
| 101 | +Supp -> pH -0.634245 | ||
| 102 | +Air -> Med -0.635679 | ||
| 103 | +OD -> Med -0.653630 | ||
| 104 | +O -> Air -0.677094 | ||
| 105 | +Supp -> Phase -0.687344 | ||
| 106 | +Gtype -> Technique -0.694977 | ||
| 107 | +Technique -> Supp -0.714796 | ||
| 108 | +OD -> Temp -0.724798 | ||
| 109 | +Supp -> Temp -0.735059 | ||
| 110 | +Gtype -> Gversion -0.783076 | ||
| 111 | +Temp -> Med -0.785893 | ||
| 112 | +Phase -> Technique -0.787474 | ||
| 113 | +OD -> Gtype -0.788802 | ||
| 114 | +Gtype -> Med -0.799774 | ||
| 115 | +Air -> OD -0.822597 | ||
| 116 | +Supp -> Anti -0.844375 | ||
| 117 | +Supp -> Air -0.856507 | ||
| 118 | +OD -> O -0.872397 | ||
| 119 | +Supp -> OD -0.885971 | ||
| 120 | +Supp -> Gversion -0.902285 | ||
| 121 | +Gtype -> Anti -0.919969 | ||
| 122 | +Gtype -> OD -0.936809 | ||
| 123 | +Agit -> O -0.963196 | ||
| 124 | +Supp -> Gtype -0.973061 | ||
| 125 | +Supp -> Technique -0.989494 | ||
| 126 | +OD -> Air -1.170906 | ||
| 127 | +Technique -> OD -1.195273 | ||
| 128 | +Technique -> Gtype -1.215623 | ||
| 129 | +Substrain -> O -1.241298 | ||
| 130 | +Supp -> Med -1.319744 | ||
| 131 | +Technique -> pH -1.339939 | ||
| 132 | +Med -> Supp -1.354155 | ||
| 133 | +Phase -> OD -1.507830 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +6.001404 O b'lemma:_' | ||
| 138 | +5.108046 O b'lemma:1' | ||
| 139 | +4.607885 Air b'lemma:anaerobic' | ||
| 140 | +4.487322 O b'lemma:2' | ||
| 141 | +4.403039 Strain b'lemma:k-12' | ||
| 142 | +4.353066 Technique b'lemma:ChIP-exo' | ||
| 143 | +4.261832 Technique b'lemma:chipseq' | ||
| 144 | +4.120645 Air b'lemma:aerobic' | ||
| 145 | +4.097041 Supp b'lemma:Iron' | ||
| 146 | +4.006566 O b'lemma:rpob' | ||
| 147 | +3.971422 Supp b'lemma:nh4cl' | ||
| 148 | +3.946783 Supp b'lemma:pq' | ||
| 149 | +3.920412 Supp b'lemma:glucose' | ||
| 150 | +3.913288 O b'postag:IN' | ||
| 151 | +3.777202 O b'lemma:3' | ||
| 152 | +3.702196 Gtype b'lemma:arca8myc' | ||
| 153 | +3.696052 O b'lemma:rep1' | ||
| 154 | +3.694299 Gtype b'lemma:wt' | ||
| 155 | +3.684859 Phase b'lemma:stationary' | ||
| 156 | +3.619890 Gtype b'lemma:flag-tag' | ||
| 157 | +3.619890 Gtype b'-1:lemma:c-terminal' | ||
| 158 | +3.561287 Gtype b'lemma:\xce\xb4cra' | ||
| 159 | +3.436909 Substrain b'lemma:mg1655' | ||
| 160 | +3.399977 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 161 | +3.390171 O b'lemma:rep2' | ||
| 162 | +3.367223 Supp b'lemma:acetate' | ||
| 163 | +3.313496 Supp b'+1:lemma:\xc2\xb5m' | ||
| 164 | +3.310220 Phase b'lemma:mid-log' | ||
| 165 | +3.304995 Gversion b'lemma:asm584v2' | ||
| 166 | +3.270028 O b'lemma:Cra' | ||
| 167 | +3.220110 Supp b'lemma:no3' | ||
| 168 | +3.184611 O b'lemma:b' | ||
| 169 | +3.183606 O b'postag::' | ||
| 170 | +3.173832 Supp b'lemma:nitrate' | ||
| 171 | +3.172458 Air b'-1:lemma:ChIP-Seq' | ||
| 172 | +3.117942 O b'lemma:a' | ||
| 173 | +3.086615 Gtype b'lemma:delta-arca' | ||
| 174 | +3.060393 Med b'lemma:LB' | ||
| 175 | +3.052585 O b'lemma:.' | ||
| 176 | +3.052585 O b'postag:.' | ||
| 177 | +3.040998 O b'-1:lemma:tag' | ||
| 178 | +3.039527 Air b'lemma:Aerobic' | ||
| 179 | +3.034395 O b'lemma:rep3' | ||
| 180 | +3.030474 Med b'lemma:lb' | ||
| 181 | +3.013829 Supp b'lemma:Fe' | ||
| 182 | +2.993252 Technique b'lemma:rna-seq' | ||
| 183 | +2.946753 Supp b'lemma:dpd' | ||
| 184 | +2.934731 Gtype b'lemma:fnr8myc' | ||
| 185 | +2.888684 Technique b'lemma:chip-seq' | ||
| 186 | +2.845234 Supp b'lemma:fructose' | ||
| 187 | +2.833231 OD b'lemma:od600' | ||
| 188 | +2.824550 O b'-1:lemma:Aerobic' | ||
| 189 | +2.820328 Gtype b'lemma:\xe2\x88\x86' | ||
| 190 | +2.817149 O b'lemma:\xcf\x8332' | ||
| 191 | +2.807553 O b'-1:lemma:ChIP-exo' | ||
| 192 | +2.800013 O b'+1:postag:RB' | ||
| 193 | +2.767317 Supp b'+1:lemma:1' | ||
| 194 | +2.763849 Technique b'lemma:rnaseq' | ||
| 195 | +2.736019 Anti b'lemma:none' | ||
| 196 | +2.735616 Med b'lemma:MOPS' | ||
| 197 | +2.704042 O b'postag:VBN' | ||
| 198 | +2.692426 Anti b'lemma:seqa' | ||
| 199 | +2.674687 O b'lemma:CEL' | ||
| 200 | +2.641978 Med b'+1:lemma:0.4' | ||
| 201 | +2.538323 O b'lemma:Custom' | ||
| 202 | +2.532184 OD b'lemma:od450' | ||
| 203 | +2.528303 Gtype b'lemma:type' | ||
| 204 | +2.515549 Gtype b'+1:lemma:type' | ||
| 205 | +2.508151 O b'lemma:-' | ||
| 206 | +2.506162 Gtype b'lemma:delta-fnr' | ||
| 207 | +2.494354 pH b'lemma:ph5' | ||
| 208 | +2.494354 pH b'+1:lemma:.5' | ||
| 209 | +2.483580 Gversion b'lemma:nc' | ||
| 210 | +2.472529 Supp b'lemma:rifampicin' | ||
| 211 | +2.439115 Air b'postag:RB' | ||
| 212 | +2.437715 Supp b'+1:lemma:Deficient' | ||
| 213 | +2.432663 Gtype b'lemma:nsrr' | ||
| 214 | +2.426483 O b'lemma:affyexp' | ||
| 215 | +2.426224 Vess b'lemma:flask' | ||
| 216 | +2.426224 Vess b'-1:lemma:warm' | ||
| 217 | +2.409664 Gtype b'lemma:\xce\xb4fur' | ||
| 218 | +2.401638 Supp b'-1:lemma:Cra' | ||
| 219 | +2.397836 Gversion b'lemma:chip-seq' | ||
| 220 | +2.376616 Gtype b'+1:lemma:with' | ||
| 221 | +2.376328 Supp b'+1:lemma:2' | ||
| 222 | +2.352749 O b'+1:lemma:od600' | ||
| 223 | +2.350360 Temp b'lemma:\xc2\xb0c' | ||
| 224 | +2.340801 Supp b'+1:lemma:_' | ||
| 225 | +2.340243 Supp b'lemma:arginine' | ||
| 226 | +2.296460 O b'lemma:chip-arca' | ||
| 227 | +2.263142 O b'-1:lemma:glucose' | ||
| 228 | +2.259312 Gtype b'lemma:wild-type' | ||
| 229 | +2.256120 O b'lemma:with' | ||
| 230 | +2.252353 Gversion b'lemma:.2' | ||
| 231 | +2.252353 Gversion b'-1:lemma:u00096' | ||
| 232 | +2.250177 Gtype b'lemma:WT' | ||
| 233 | +2.244062 O b'lemma:s' | ||
| 234 | +2.242532 Technique b'lemma:ChIP-Seq' | ||
| 235 | +2.236704 Gtype b'-1:lemma:_' | ||
| 236 | +2.235688 O b'lemma:argr' | ||
| 237 | +2.232314 Gversion b'lemma:u00096' | ||
| 238 | +2.232314 Gversion b'+1:lemma:.2' | ||
| 239 | +2.227051 Med b'lemma:m63' | ||
| 240 | +2.196925 Gversion b'lemma:000913' | ||
| 241 | +2.195820 O b'-1:lemma:stpa' | ||
| 242 | +2.190615 O b'lemma:oxyr' | ||
| 243 | +2.167202 O b'-1:lemma:anaerobic' | ||
| 244 | +2.153126 Gtype b'-1:lemma:ptac' | ||
| 245 | +2.138902 pH b'+1:postag:CD' | ||
| 246 | +2.137252 Strain b'+1:lemma:substr' | ||
| 247 | +2.135331 Gtype b'lemma:\xce\xb4soxs' | ||
| 248 | +2.132696 Technique b'-1:lemma:IP' | ||
| 249 | +2.130445 O b'+1:lemma:pq' | ||
| 250 | +2.121844 O b'lemma:or' | ||
| 251 | +2.120627 Med b'+1:lemma:2.0' | ||
| 252 | +2.119248 O b'-1:lemma:0.3-0.35' | ||
| 253 | +2.102124 Anti b'lemma:anti-myc' | ||
| 254 | +2.099119 Gtype b'+1:lemma:pq' | ||
| 255 | +2.097053 Gversion b'-1:lemma:nc' | ||
| 256 | +2.095915 O b'postag:SYM' | ||
| 257 | +2.087696 Gtype b'+1:lemma:flagtag' | ||
| 258 | +2.068537 Phase b'lemma:phase' | ||
| 259 | +2.039522 O b'-1:lemma:lb' | ||
| 260 | +2.034656 O b'lemma:ompr' | ||
| 261 | +2.020219 Supp b'lemma:nacl' | ||
| 262 | +2.011236 O b'+1:lemma:anti-fur' | ||
| 263 | +2.002622 O b'lemma:purr' | ||
| 264 | +1.989136 Gtype b'lemma:ptac' | ||
| 265 | +1.986425 O b'lemma:Lrp' | ||
| 266 | +1.986041 Air b'lemma:anaerobically' | ||
| 267 | +1.984872 Technique b'postag:NNP' | ||
| 268 | +1.982619 Supp b'lemma:Leu' | ||
| 269 | +1.963147 Air b'-1:lemma:_' | ||
| 270 | +1.960508 Air b'-1:lemma:-' | ||
| 271 | +1.951971 O b'lemma:chip' | ||
| 272 | +1.946660 Gtype b'lemma:deltaseqa' | ||
| 273 | +1.946660 Gtype b'-1:lemma:old' | ||
| 274 | +1.941357 Technique b'-1:lemma:chip-exo' | ||
| 275 | +1.929969 Anti b'+1:lemma:antibody' | ||
| 276 | +1.926992 Phase b'-1:lemma:mid-log' | ||
| 277 | +1.917242 Gtype b'-1:lemma:rpob' | ||
| 278 | +1.913616 Substrain b'+1:lemma:phtpg' | ||
| 279 | +1.907553 Temp b'-1:lemma:37' | ||
| 280 | +1.902343 O b'-1:lemma:type' | ||
| 281 | +1.899563 Gtype b'lemma:\xce\xb4ompr' | ||
| 282 | +1.896818 Gtype b'+1:lemma:aerobic' | ||
| 283 | +1.896130 Supp b'lemma:iptg' | ||
| 284 | +1.891122 Air b'lemma:Anaerobic' | ||
| 285 | +1.888582 Gtype b'lemma:pk4854' | ||
| 286 | +1.885003 Temp b'lemma:43' | ||
| 287 | +1.884992 Med b'+1:lemma:+' | ||
| 288 | +1.883373 Gtype b'+1:lemma:ph5' | ||
| 289 | +1.883065 Air b'-1:postag::' | ||
| 290 | +1.880978 O b'postag:DT' | ||
| 291 | +1.869735 O b'postag:CC' | ||
| 292 | +1.867667 Supp b'-1:lemma:with' | ||
| 293 | +1.859135 Supp b'-1:lemma:\xc2\xb5m' | ||
| 294 | +1.850190 Temp b'+1:lemma:\xc2\xb0c' | ||
| 295 | +1.849895 Vess b'-1:postag:VBN' | ||
| 296 | +1.830649 O b'+1:lemma:43' | ||
| 297 | +1.826705 Supp b'+1:lemma:respiratory' | ||
| 298 | +1.826425 Med b'postag:NNP' | ||
| 299 | +1.818906 O b'lemma:culture' | ||
| 300 | +1.815650 Med b'-1:lemma:ml' | ||
| 301 | +1.814335 Gtype b'-1:lemma:nsrr' | ||
| 302 | +1.807866 Technique b'-1:lemma:input' | ||
| 303 | +1.801111 pH b'lemma:.5' | ||
| 304 | +1.801111 pH b'-1:lemma:ph5' | ||
| 305 | +1.799448 Supp b'lemma:Adenine' | ||
| 306 | +1.798437 Air b'+1:lemma:at' | ||
| 307 | +1.797384 O b'lemma:genotype/variation' | ||
| 308 | +1.795853 Temp b'-1:lemma:43' | ||
| 309 | +1.792969 O b'lemma:Fur' | ||
| 310 | +1.792070 Technique b'-1:lemma:_' | ||
| 311 | +1.790333 O b'+1:lemma:chip-seq' | ||
| 312 | +1.785178 Gversion b'+1:lemma:000913' | ||
| 313 | +1.777548 Anti b'lemma:anti-rpos' | ||
| 314 | +1.772627 Supp b'+1:lemma:hour' | ||
| 315 | +1.771735 O b'lemma:chip-fnr' | ||
| 316 | +1.766973 Technique b'+1:lemma:chip-exo' | ||
| 317 | +1.765244 Supp b'lemma:methanol' | ||
| 318 | +1.753576 OD b'+1:lemma:stationary' | ||
| 319 | +1.735182 O b'lemma:for' | ||
| 320 | +1.733859 Vess b'+1:lemma:at' | ||
| 321 | +1.726551 O b'lemma:pt7' | ||
| 322 | +1.711211 O b'postag:VBG' | ||
| 323 | +1.709643 O b'-1:lemma:\xc2\xb0c' | ||
| 324 | +1.699026 Temp b'lemma:37' | ||
| 325 | +1.698654 Gtype b'+1:lemma:,' | ||
| 326 | +1.698654 Gtype b'+1:postag:,' | ||
| 327 | +1.691558 Gtype b'+1:lemma:_' | ||
| 328 | +1.691282 O b'lemma:soxs' | ||
| 329 | +1.691282 O b'lemma:soxr' | ||
| 330 | +1.691054 Supp b'lemma:20' | ||
| 331 | +1.680349 Gversion b'postag:CD' | ||
| 332 | +1.680242 O b'+1:lemma:mid-log' | ||
| 333 | +1.676394 O b'lemma:at' | ||
| 334 | +1.671037 Supp b'-1:lemma:+' | ||
| 335 | +1.657960 Phase b'+1:lemma:for' | ||
| 336 | +1.657799 Technique b'-1:lemma:rna-seq' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.138337 OD b'postag:IN' | ||
| 341 | +-0.140202 O b'lemma:n2' | ||
| 342 | +-0.141199 Gtype b'-1:lemma:-lrb-' | ||
| 343 | +-0.141513 Med b'postag:-LRB-' | ||
| 344 | +-0.142816 O b'lemma:aerobically' | ||
| 345 | +-0.148531 Technique b'+1:postag:JJ' | ||
| 346 | +-0.153818 Gtype b'postag:VBG' | ||
| 347 | +-0.163124 Supp b'postag:CD' | ||
| 348 | +-0.169140 O b'-1:lemma:of' | ||
| 349 | +-0.172938 O b'+1:lemma:2.0' | ||
| 350 | +-0.175379 Technique b'-1:lemma::' | ||
| 351 | +-0.175946 Supp b'-1:lemma:%' | ||
| 352 | +-0.176380 O b'-1:postag:-LRB-' | ||
| 353 | +-0.177032 OD b'+1:postag:CD' | ||
| 354 | +-0.186317 O b'+1:lemma:pahse' | ||
| 355 | +-0.188005 OD b'+1:postag:NNS' | ||
| 356 | +-0.189604 Med b'+1:lemma:m9' | ||
| 357 | +-0.194248 Gtype b'postag:CD' | ||
| 358 | +-0.196879 Med b'-1:lemma:MOPS' | ||
| 359 | +-0.200307 O b'+1:lemma:purify' | ||
| 360 | +-0.202100 Med b'-1:postag:NN' | ||
| 361 | +-0.209858 O b'-1:lemma:delta' | ||
| 362 | +-0.209949 O b'lemma:10' | ||
| 363 | +-0.214403 OD b'+1:lemma:0.4' | ||
| 364 | +-0.215059 O b'lemma:co2' | ||
| 365 | +-0.217010 Phase b'postag:JJ' | ||
| 366 | +-0.220806 Med b'postag:CD' | ||
| 367 | +-0.221059 Gtype b'-1:lemma:,' | ||
| 368 | +-0.221059 Gtype b'-1:postag:,' | ||
| 369 | +-0.227070 O b'lemma:mg/ml' | ||
| 370 | +-0.227070 O b'-1:lemma:150' | ||
| 371 | +-0.228793 O b'-1:lemma:grow' | ||
| 372 | +-0.241460 Supp b'lemma:and' | ||
| 373 | +-0.241888 O b'lemma:medium' | ||
| 374 | +-0.246141 Gtype b'+1:lemma:2' | ||
| 375 | +-0.251300 Gtype b'postag:NNS' | ||
| 376 | +-0.251694 O b'+1:lemma:sample' | ||
| 377 | +-0.253709 Supp b'+1:postag:IN' | ||
| 378 | +-0.255442 Gtype b'-1:lemma:-' | ||
| 379 | +-0.263468 O b'+1:postag:-RRB-' | ||
| 380 | +-0.271432 Gtype b'+1:postag:NNS' | ||
| 381 | +-0.278350 Air b'postag:CD' | ||
| 382 | +-0.280151 O b'postag:RB' | ||
| 383 | +-0.286504 O b'-1:lemma:purify' | ||
| 384 | +-0.287229 Supp b'-1:postag:VBG' | ||
| 385 | +-0.291292 O b'+1:lemma:%' | ||
| 386 | +-0.295935 OD b'+1:lemma:in' | ||
| 387 | +-0.296047 O b'-1:lemma:rna' | ||
| 388 | +-0.296196 Gtype b'lemma:ompr' | ||
| 389 | +-0.297998 O b'+1:lemma:phase' | ||
| 390 | +-0.299404 Phase b'-1:lemma:at' | ||
| 391 | +-0.304065 O b'lemma:30' | ||
| 392 | +-0.305817 O b'+1:lemma:-lcb-' | ||
| 393 | +-0.308356 O b'-1:lemma:20' | ||
| 394 | +-0.308695 O b'+1:lemma:mg1655' | ||
| 395 | +-0.311346 O b'+1:lemma:delta' | ||
| 396 | +-0.313799 O b'-1:postag:VBP' | ||
| 397 | +-0.315020 O b'lemma:e.' | ||
| 398 | +-0.315230 O b'-1:lemma:e.' | ||
| 399 | +-0.319138 Gtype b'+1:lemma:-lrb-' | ||
| 400 | +-0.321739 Anti b'+1:postag:JJ' | ||
| 401 | +-0.322662 O b'-1:lemma:30' | ||
| 402 | +-0.329200 O b'lemma:nacl' | ||
| 403 | +-0.329442 Gtype b'+1:lemma:cra' | ||
| 404 | +-0.332012 O b'-1:lemma:o2' | ||
| 405 | +-0.332558 O b'+1:lemma:from' | ||
| 406 | +-0.333621 Gtype b'+1:lemma:a' | ||
| 407 | +-0.335398 O b'+1:lemma:cell' | ||
| 408 | +-0.339984 O b'lemma:pahse' | ||
| 409 | +-0.350806 O b'-1:lemma:fresh' | ||
| 410 | +-0.364120 O b'+1:lemma:dissolve' | ||
| 411 | +-0.372799 O b'+1:lemma:minimal' | ||
| 412 | +-0.374219 Supp b'+1:postag:VBN' | ||
| 413 | +-0.377677 Gtype b'-1:postag:CD' | ||
| 414 | +-0.390295 O b'+1:postag:IN' | ||
| 415 | +-0.390779 Med b'-1:postag:CD' | ||
| 416 | +-0.399008 Technique b'-1:postag::' | ||
| 417 | +-0.401291 O b'+1:lemma:strain' | ||
| 418 | +-0.405578 O b'-1:lemma:affinity' | ||
| 419 | +-0.411039 O b'lemma:minimal' | ||
| 420 | +-0.413767 O b'lemma:8' | ||
| 421 | +-0.418867 O b'-1:lemma:rifampicin' | ||
| 422 | +-0.420435 Med b'+1:postag:NNS' | ||
| 423 | +-0.421888 O b'-1:lemma:iptg' | ||
| 424 | +-0.426304 O b'-1:lemma:0.1' | ||
| 425 | +-0.427748 O b'-1:lemma:um' | ||
| 426 | +-0.427748 O b'+1:lemma:paraquat' | ||
| 427 | +-0.432025 Supp b'+1:lemma:glucose' | ||
| 428 | +-0.439327 OD b'+1:postag:CC' | ||
| 429 | +-0.440292 Gtype b'+1:lemma:b' | ||
| 430 | +-0.444597 Med b'+1:postag:NN' | ||
| 431 | +-0.449089 O b'+1:lemma:shake' | ||
| 432 | +-0.454608 O b'-1:lemma:from' | ||
| 433 | +-0.468184 O b'lemma:of' | ||
| 434 | +-0.472171 O b'lemma:\xc2\xb0c' | ||
| 435 | +-0.475747 O b'lemma:phase' | ||
| 436 | +-0.483124 O b'-1:lemma:mid-log' | ||
| 437 | +-0.485719 O b'+1:lemma:until' | ||
| 438 | +-0.487110 Temp b'postag:JJ' | ||
| 439 | +-0.495708 O b'-1:lemma:chip-exo' | ||
| 440 | +-0.495761 O b'-1:lemma:cra' | ||
| 441 | +-0.499278 Temp b'+1:lemma:to' | ||
| 442 | +-0.499278 Temp b'+1:postag:TO' | ||
| 443 | +-0.502976 O b'+1:lemma:rep1' | ||
| 444 | +-0.516570 O b'lemma:150' | ||
| 445 | +-0.516570 O b'+1:lemma:mg/ml' | ||
| 446 | +-0.517552 OD b'+1:lemma:and' | ||
| 447 | +-0.526042 O b'lemma:dissolve' | ||
| 448 | +-0.528223 O b'lemma:m63' | ||
| 449 | +-0.532678 O b'lemma:glucose' | ||
| 450 | +-0.539809 O b'-1:lemma:mm' | ||
| 451 | +-0.555116 O b'+1:lemma:Aerobic' | ||
| 452 | +-0.560647 Supp b'postag:CC' | ||
| 453 | +-0.568048 O b'+1:lemma:b' | ||
| 454 | +-0.574891 O b'+1:lemma:300' | ||
| 455 | +-0.583571 O b'+1:lemma:c' | ||
| 456 | +-0.591151 O b'-1:lemma:g/l' | ||
| 457 | +-0.591330 Temp b'-1:lemma:\xc2\xb0c' | ||
| 458 | +-0.600038 O b'+1:postag:NNS' | ||
| 459 | +-0.602099 OD b'postag:JJ' | ||
| 460 | +-0.605582 pH b'postag:NN' | ||
| 461 | +-0.607566 OD b'+1:lemma:mid-log' | ||
| 462 | +-0.610267 O b'lemma:lb' | ||
| 463 | +-0.612280 O b'lemma:purify' | ||
| 464 | +-0.617785 Gtype b'lemma:_' | ||
| 465 | +-0.625835 O b'+1:lemma:0.4' | ||
| 466 | +-0.638498 O b'+1:lemma:arginine' | ||
| 467 | +-0.643623 OD b'lemma:-lrb-' | ||
| 468 | +-0.644126 Gtype b'-1:postag:SYM' | ||
| 469 | +-0.658568 Temp b'postag:NN' | ||
| 470 | +-0.658731 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 471 | +-0.661085 O b'+1:lemma:fecl2' | ||
| 472 | +-0.669040 O b'lemma:mg1655' | ||
| 473 | +-0.672673 O b'lemma:dpd' | ||
| 474 | +-0.698443 Supp b'+1:lemma:rifampicin' | ||
| 475 | +-0.713908 O b'-1:lemma:until' | ||
| 476 | +-0.714588 O b'-1:lemma:od600' | ||
| 477 | +-0.721807 Gtype b'-1:postag:DT' | ||
| 478 | +-0.723775 Gtype b'lemma:delta' | ||
| 479 | +-0.727392 OD b'postag:-LRB-' | ||
| 480 | +-0.754913 O b'-1:lemma:1' | ||
| 481 | +-0.773161 OD b'+1:postag:NN' | ||
| 482 | +-0.785912 Anti b'+1:lemma:anti-fur' | ||
| 483 | +-0.798212 O b'+1:lemma:0.3' | ||
| 484 | +-0.806842 O b'lemma:anaerobically' | ||
| 485 | +-0.817840 O b'lemma:od600' | ||
| 486 | +-0.828895 Phase b'-1:postag:JJ' | ||
| 487 | +-0.832410 O b'+1:lemma:in' | ||
| 488 | +-0.838317 Med b'+1:postag:IN' | ||
| 489 | +-0.843570 O b'+1:lemma:\xc2\xb0c' | ||
| 490 | +-0.853228 O b'+1:lemma:at' | ||
| 491 | +-0.895416 Air b'-1:postag:JJ' | ||
| 492 | +-0.900736 O b'lemma:media' | ||
| 493 | +-0.902081 O b'-1:lemma:\xe2\x88\x86' | ||
| 494 | +-0.906592 O b'lemma:0.3' | ||
| 495 | +-0.918504 O b'-1:lemma:0.2' | ||
| 496 | +-0.931732 O b'+1:postag:VBG' | ||
| 497 | +-0.943156 O b'lemma:0.1' | ||
| 498 | +-0.954406 O b'-1:lemma:dissolve' | ||
| 499 | +-0.954406 O b'+1:lemma:methanol' | ||
| 500 | +-0.966339 Supp b'+1:lemma:acetate' | ||
| 501 | +-0.995930 O b'lemma:fecl2' | ||
| 502 | +-1.003164 O b'lemma:20' | ||
| 503 | +-1.026277 O b'lemma:mid-log' | ||
| 504 | +-1.053295 O b'-1:lemma:ompr' | ||
| 505 | +-1.054899 O b'lemma:anaerobic' | ||
| 506 | +-1.057596 O b'lemma:2h' | ||
| 507 | +-1.057596 O b'-1:lemma:additional' | ||
| 508 | +-1.080282 O b'+1:lemma:g/l' | ||
| 509 | +-1.082820 O b'lemma:0.2' | ||
| 510 | +-1.104495 O b'-1:lemma:~' | ||
| 511 | +-1.121867 O b'-1:lemma:ml' | ||
| 512 | +-1.127613 O b'lemma:k-12' | ||
| 513 | +-1.175804 O b'lemma:\xe2\x88\x86' | ||
| 514 | +-1.176063 O b'lemma:\xce\xb4fur' | ||
| 515 | +-1.192468 O b'+1:lemma:supplement' | ||
| 516 | +-1.233751 O b'-1:postag:VBG' | ||
| 517 | +-1.236448 O b'postag:VBP' | ||
| 518 | +-1.249871 O b'-1:lemma:sample' | ||
| 519 | +-1.284753 O b'-1:lemma:rpob' | ||
| 520 | +-1.294533 O b'-1:lemma:co2' | ||
| 521 | +-1.310574 O b'lemma:37' | ||
| 522 | +-1.338283 O b'-1:postag::' | ||
| 523 | +-1.367124 Anti b'postag:NNP' | ||
| 524 | +-1.397494 O b'-1:lemma:37' | ||
| 525 | +-1.398009 Supp b'postag:JJ' | ||
| 526 | +-1.437506 Air b'+1:postag:JJ' | ||
| 527 | +-1.540588 O b'lemma:wt' | ||
| 528 | +-1.569408 O b'-1:lemma:2' | ||
| 529 | +-1.577711 O b'+1:lemma:+' | ||
| 530 | +-1.615554 O b'+1:lemma:hour' | ||
| 531 | +-1.616588 O b'lemma:methanol' | ||
| 532 | +-1.673269 O b'lemma:rifampicin' | ||
| 533 | +-1.677284 O b'-1:lemma:IP' | ||
| 534 | +-1.688519 O b'-1:lemma:nsrr' | ||
| 535 | +-1.716711 Air b'postag:NN' | ||
| 536 | +-1.806551 O b'+1:lemma:2' | ||
| 537 | +-1.992901 O b'+1:lemma:1' | ||
| 538 | +-2.768062 O b'-1:lemma:_' | ||
| 539 | +-2.825339 O b'-1:lemma::' | ||
| 540 | + |
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