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CRF/bin/FIG1.png
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CRF/bin/FiguresGridTags_v12.png
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| ... | @@ -86,6 +86,9 @@ if __name__ == '__main__': | ... | @@ -86,6 +86,9 @@ if __name__ == '__main__': |
| 86 | scores[report[7:11]]['f1-score']=summaryScores[2] | 86 | scores[report[7:11]]['f1-score']=summaryScores[2] |
| 87 | 87 | ||
| 88 | print(DF(scores).T) | 88 | print(DF(scores).T) |
| 89 | + print('------------------------------- SAVING TABLE --------------------------------\n') | ||
| 90 | + with open(os.path.join(options.inputPath, str(options.figureName) ), 'w') as File: | ||
| 91 | + | ||
| 89 | scoresTable = DF(scores).T | 92 | scoresTable = DF(scores).T |
| 90 | 93 | ||
| 91 | imageName=os.path.join(options.outputPath, options.figureName) | 94 | imageName=os.path.join(options.outputPath, options.figureName) | ... | ... |
CRF/bin/figures-tag-report.py
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| 1 | +from optparse import OptionParser | ||
| 2 | +import re | ||
| 3 | +from collections import defaultdict as df | ||
| 4 | +import os | ||
| 5 | +import random | ||
| 6 | +from pandas import DataFrame as DF | ||
| 7 | +import matplotlib.pyplot as plt | ||
| 8 | + | ||
| 9 | +# Objective | ||
| 10 | +# Drawn figures of grid reports | ||
| 11 | +# | ||
| 12 | +# Input parameters | ||
| 13 | +# --inputPath=PATH Path of inputfiles | ||
| 14 | +# --outputPath=PATH Path to place output figures | ||
| 15 | +# --figureName single run specific name figure, multifigure first part of name | ||
| 16 | +# --inputFile Use it for a single report | ||
| 17 | +# --version CRF-script version of reports | ||
| 18 | +# | ||
| 19 | +# Output | ||
| 20 | +# training and test data set | ||
| 21 | +# | ||
| 22 | +# Examples | ||
| 23 | +# python figures-reports.py | ||
| 24 | +# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/reports/ | ||
| 25 | +# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/figures/ | ||
| 26 | +# --figureName FiguresGrid | ||
| 27 | +# --inputFile report_Run1_v11.txt | ||
| 28 | +# --version v11 | ||
| 29 | + | ||
| 30 | +# python figures-tag-report.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/reports/ --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/figures/ --figureName FiguresGrid_v11 --version v11 | ||
| 31 | +__author__ = 'egaytan' | ||
| 32 | + | ||
| 33 | +#################################################################################### | ||
| 34 | +# FUNCTIONS # | ||
| 35 | +#################################################################################### | ||
| 36 | +def Filter(rfile, options,v): | ||
| 37 | + if options[0]=='all': | ||
| 38 | + if rfile[0:6]=='report' and rfile[-7:-4]==v: return(True) | ||
| 39 | + elif rfile in options: | ||
| 40 | + return(True) | ||
| 41 | + return(False) | ||
| 42 | + | ||
| 43 | +#################################################################################### | ||
| 44 | +# MAIN PROGRAM # | ||
| 45 | +#################################################################################### | ||
| 46 | + | ||
| 47 | +if __name__ == '__main__': | ||
| 48 | + # Defining parameters | ||
| 49 | + parser = OptionParser() | ||
| 50 | + parser.add_option('--inputPath', dest='inputPath', help='Path of output from CoreNLP', metavar='PATH') | ||
| 51 | + parser.add_option('--outputPath', dest='outputPath', help='Path to place output figures', metavar='PATH') | ||
| 52 | + parser.add_option('--figureName', dest='figureName', help='Specific or first part of figurename', metavar='FILE') | ||
| 53 | + parser.add_option('--version', dest='version', help='script version', metavar='FILE') | ||
| 54 | + parser.add_option('--inputFile', dest='inputFile', help='Use it for a specific report files', metavar='FILE', default='all,') | ||
| 55 | + | ||
| 56 | + (options, args) = parser.parse_args() | ||
| 57 | + if len(args) > 0: | ||
| 58 | + parser.error('Any parameter given.\nFor multi input files be sure to seprate the filenames by coma') | ||
| 59 | + sys.exit(1) | ||
| 60 | + | ||
| 61 | + print('-------------------------------- PARAMETERS --------------------------------') | ||
| 62 | + print('Path of output from CoreNLP: ' + str(options.inputPath)) | ||
| 63 | + print('Path to place output figures: ' + str(options.outputPath)) | ||
| 64 | + print('Specific or first part of figurename: ' + str(options.figureName)) | ||
| 65 | + print('CRF-script version: ' + str(options.version)) | ||
| 66 | + | ||
| 67 | + print('-------------------------------- PROCESSING --------------------------------') | ||
| 68 | + | ||
| 69 | + rawInputRepotsList = str(options.inputFile).split(',') | ||
| 70 | + reportFileList = [ rfile for rfile in os.listdir(options.inputPath) if Filter(rfile, rawInputRepotsList, str(options.version)) ] | ||
| 71 | + scores = df(dict) | ||
| 72 | + #CV={} | ||
| 73 | + print('Report files: ' + str(options.inputFile )) | ||
| 74 | + print('\n'.join(reportFileList)) | ||
| 75 | + print('----------------------------------- NOTE -----------------------------------') | ||
| 76 | + print('\n-------- All chosen report files should be in inputPath given---------------\n') | ||
| 77 | + | ||
| 78 | + print('------------------------------- SAVING DATA --------------------------------\n') | ||
| 79 | + OD, pH, Technique, Med, Temp, Vess, Agit, Phase, Air, Anti, Strain, Gtype, Substrain, Supp, Gversion = [], [], [], [], [], [], [], [], [], [], [], [], [], [], [] | ||
| 80 | + | ||
| 81 | + precision = df(list) | ||
| 82 | + recall = df(list) | ||
| 83 | + fscore = df(list) | ||
| 84 | + support = df(list) | ||
| 85 | + for report in reportFileList: | ||
| 86 | + tags = {} | ||
| 87 | + with open(os.path.join(options.inputPath, report), 'r') as File: | ||
| 88 | + string = File.read() | ||
| 89 | + tags['OD']= re.findall('OD\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 90 | + tags['pH']= re.findall('pH\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 91 | + tags['Technique']= re.findall('Technique\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 92 | + tags['Med']= re.findall('Med\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 93 | + tags['Temp']= re.findall('Temp\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 94 | + tags['Vess']= re.findall('Vess\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 95 | + tags['Agit']= re.findall('Agit\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 96 | + tags['Phase']= re.findall('Phase\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 97 | + tags['Air']= re.findall('Air\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 98 | + tags['Anti']= re.findall('Anti\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 99 | + tags['Strain']= re.findall('Strain\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 100 | + tags['Gtype']= re.findall('Gtype\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 101 | + tags['Substrain']= re.findall('Substrain\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 102 | + tags['Supp']= re.findall('Supp\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 103 | + tags['Gversion']= re.findall('Gversion\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0] | ||
| 104 | + | ||
| 105 | + for k in tags.keys(): | ||
| 106 | + precision[k].append(float(tags[k][0])) | ||
| 107 | + recall[k].append(float(tags[k][1])) | ||
| 108 | + fscore[k].append(float(tags[k][2])) | ||
| 109 | + #support[k].append(tags[k][3]) | ||
| 110 | + print(DF(precision)) | ||
| 111 | + print(precision) | ||
| 112 | + #lines = ['-', '--', '-.', ':', '.', ',', 'o', 'v', '^', '<', '>', '1', '2', '3', '4', 's', 'p', '*', 'h', 'H', '+', 'x', 'D', 'd', '|', '_'] | ||
| 113 | + lines = ['-','--','-.',':','o','v','^','<','>','s','p','*','H','+','x','D','|'] | ||
| 114 | + imageName = str(options.figureName) + '_' + str(options.version) | ||
| 115 | + fig = plt.figure() | ||
| 116 | + plt.rcParams.update({'font.size': 15}) | ||
| 117 | + #fig.set_figheight(13) | ||
| 118 | + #fig.set_figwidth(20) | ||
| 119 | + plt.xlabel("Runs") | ||
| 120 | + plt.ylabel("score") | ||
| 121 | + plt.ylim(-0.2, 1.2) | ||
| 122 | + lines=['-', '--', '-.', ':', ',', 'o', 'v', '^', '<', '>', '1', '2', '3', '4', 's', 'p', '*', 'h', 'H', '+', 'x', 'D', 'd', '|', '_'] | ||
| 123 | + for i,k in enumerate(tags.keys()): | ||
| 124 | + plt.grid(False) | ||
| 125 | + | ||
| 126 | + plt.plot(precision[k], lines[i], label=k, linewidth=8) | ||
| 127 | + plt.legend(loc='lower right') | ||
| 128 | + plt.tight_layout() | ||
| 129 | + plt.xticks(range(8),['run1', 'run2', 'run3', 'run4', 'run5', 'run6', 'run7', 'run8']) | ||
| 130 | + fig.savefig(imageName, bbox_inches='tight', pad_inches = 0.5) |
CRF/bin/grid_v12.sh
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| 1 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_1 --version _v12 > ../outputs/Run_1.txt | ||
| 2 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_2 --version _v12 --S1 > ../outputs/Run_2.txt | ||
| 3 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_3 --version _v12 --S2 > ../outputs/Run_3.txt | ||
| 4 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_4 --version _v12 --S1 --S2 > ../outputs/Run_4.txt | ||
| 5 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_5 --version _v12 --S3 > ../outputs/Run_5.txt | ||
| 6 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_6 --version _v12 --S1 --S3 > ../outputs/Run_6.txt | ||
| 7 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_7 --version _v12 --S2 --S3 > ../outputs/Run_7.txt | ||
| 8 | +python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_8 --version _v12 --S1 --S2 --S3 > ../outputs/Run_8.txt | ||
| 9 | + | ||
| 10 | + |
CRF/bin/grid_v13.sh
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| 1 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_1 --version _v13 > ../outputs/Run_1.txt | ||
| 2 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_2 --version _v13 --S1 > ../outputs/Run_2.txt | ||
| 3 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_3 --version _v13 --S2 > ../outputs/Run_3.txt | ||
| 4 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_4 --version _v13 --S1 --S2 > ../outputs/Run_4.txt | ||
| 5 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_5 --version _v13 --S3 > ../outputs/Run_5.txt | ||
| 6 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_6 --version _v13 --S1 --S3 > ../outputs/Run_6.txt | ||
| 7 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_7 --version _v13 --S2 --S3 > ../outputs/Run_7.txt | ||
| 8 | +python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_8 --version _v13 --S1 --S2 --S3 > ../outputs/Run_8.txt | ||
| 9 | + | ||
| 10 | + |
| ... | @@ -423,7 +423,8 @@ if __name__ == "__main__": | ... | @@ -423,7 +423,8 @@ if __name__ == "__main__": |
| 423 | # Saving model | 423 | # Saving model |
| 424 | print(" Saving training model...") | 424 | print(" Saving training model...") |
| 425 | t1 = time() | 425 | t1 = time() |
| 426 | - nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '.mod' | 426 | + #nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod' |
| 427 | + nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname) + str(options.version) + '.mod' | ||
| 427 | joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) | 428 | joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) |
| 428 | print(" Saving training model done in: %fs" % (time() - t1)) | 429 | print(" Saving training model done in: %fs" % (time() - t1)) |
| 429 | 430 | ... | ... |
| ... | @@ -423,7 +423,9 @@ if __name__ == "__main__": | ... | @@ -423,7 +423,9 @@ if __name__ == "__main__": |
| 423 | # Saving model | 423 | # Saving model |
| 424 | print(" Saving training model...") | 424 | print(" Saving training model...") |
| 425 | t1 = time() | 425 | t1 = time() |
| 426 | - nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod' | 426 | + #nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod' |
| 427 | + nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname) + str(options.version) + '.mod' | ||
| 428 | + | ||
| 427 | joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) | 429 | joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) |
| 428 | print(" Saving training model done in: %fs" % (time() - t1)) | 430 | print(" Saving training model done in: %fs" % (time() - t1)) |
| 429 | 431 | ... | ... |
CRF/bin/training_validation_v12.py
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| 1 | +# -*- coding: UTF-8 -*- | ||
| 2 | + | ||
| 3 | +import os | ||
| 4 | +from itertools import chain | ||
| 5 | +from optparse import OptionParser | ||
| 6 | +from time import time | ||
| 7 | +from collections import Counter | ||
| 8 | +import re | ||
| 9 | + | ||
| 10 | +import nltk | ||
| 11 | +import sklearn | ||
| 12 | +import scipy.stats | ||
| 13 | +import sys | ||
| 14 | + | ||
| 15 | +from sklearn.externals import joblib | ||
| 16 | +from sklearn.metrics import make_scorer | ||
| 17 | +from sklearn.cross_validation import cross_val_score | ||
| 18 | +from sklearn.grid_search import RandomizedSearchCV | ||
| 19 | + | ||
| 20 | +import sklearn_crfsuite | ||
| 21 | +from sklearn_crfsuite import scorers | ||
| 22 | +from sklearn_crfsuite import metrics | ||
| 23 | + | ||
| 24 | +from pandas import DataFrame as DF | ||
| 25 | +from nltk.corpus import stopwords | ||
| 26 | + | ||
| 27 | + | ||
| 28 | +# Objective | ||
| 29 | +# Training and evaluation of CRFs with sklearn-crfsuite. | ||
| 30 | +# | ||
| 31 | +# Input parameters | ||
| 32 | +# --inputPath=PATH Path of training and test data set | ||
| 33 | +# --trainingFile File with training data set | ||
| 34 | +# --testFile File with test data set | ||
| 35 | +# --outputPath=PATH Output path to place output files | ||
| 36 | +# --nameGrid Number of run | ||
| 37 | +# --version Version Report | ||
| 38 | + | ||
| 39 | +# Output | ||
| 40 | +# 1) Best model | ||
| 41 | +# 2) Report | ||
| 42 | + | ||
| 43 | +# Examples | ||
| 44 | +# python training_validation_v10.py | ||
| 45 | +# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 46 | +# --trainingFile training-data-set-70.txt | ||
| 47 | +# --testFile test-data-set-30.txt | ||
| 48 | +# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ | ||
| 49 | +# --version _v1 | ||
| 50 | +# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3 | ||
| 51 | + | ||
| 52 | +################################################################## | ||
| 53 | +# FEATURES # | ||
| 54 | +################################################################## | ||
| 55 | + | ||
| 56 | +#================== COMPLETE WORD FEATURES ======================# | ||
| 57 | + | ||
| 58 | +def isGreek(word): | ||
| 59 | + ## Complete word are greek letters | ||
| 60 | + alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω', | ||
| 61 | + 'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω'] | ||
| 62 | + if word in alphabet: | ||
| 63 | + return True | ||
| 64 | + else: | ||
| 65 | + return False | ||
| 66 | + | ||
| 67 | +#================ INNER OF THE WORD FEATURES ====================# | ||
| 68 | + | ||
| 69 | +def hNumber(word): | ||
| 70 | + ## Al leats has one greek letter | ||
| 71 | + for l in word: | ||
| 72 | + if l.isdigit(): | ||
| 73 | + return True | ||
| 74 | + return False | ||
| 75 | + | ||
| 76 | +def symb(word): | ||
| 77 | + n=0 | ||
| 78 | + ## At least a not alphanumeric character | ||
| 79 | + for l in word: | ||
| 80 | + if l.isdigit(): n = n+1 | ||
| 81 | + if l.isalpha(): n = n+1 | ||
| 82 | + #Exclude Greek letters | ||
| 83 | + if isGreek(l): n = n+1 | ||
| 84 | + | ||
| 85 | + if n<len(word): return True | ||
| 86 | + else: return False | ||
| 87 | + | ||
| 88 | +def hUpper(word): | ||
| 89 | + ## At least an upper letter | ||
| 90 | + for l in word: | ||
| 91 | + if l.isupper(): return True | ||
| 92 | + return False | ||
| 93 | + | ||
| 94 | +def hLower(word): | ||
| 95 | + ## At least a lower letter | ||
| 96 | + for l in word: | ||
| 97 | + if l.islower(): return True | ||
| 98 | + return False | ||
| 99 | + | ||
| 100 | +def hGreek(word): | ||
| 101 | + ## At least a greek letter | ||
| 102 | + for l in word: | ||
| 103 | + if isGreek(l): return True | ||
| 104 | + return False | ||
| 105 | + | ||
| 106 | +#============================FEATURES===========================# | ||
| 107 | + | ||
| 108 | +def word2features(sent, i, S1, S2, S3): | ||
| 109 | + ## Getting word features | ||
| 110 | + | ||
| 111 | + ## Saving CoreNLP annotations | ||
| 112 | + listElem = sent[i].split('|') | ||
| 113 | + word = listElem[0] | ||
| 114 | + lemma = listElem[1] | ||
| 115 | + postag = listElem[2] | ||
| 116 | + #ner = listElem[4] | ||
| 117 | + | ||
| 118 | + #=========================== G =============================# | ||
| 119 | + ## NAME LEVEL G | ||
| 120 | + ## FUTURE TYPE General features | ||
| 121 | + | ||
| 122 | + features = { | ||
| 123 | + ## basal features | ||
| 124 | + 'lemma': lemma, | ||
| 125 | + 'postag': postag | ||
| 126 | + } | ||
| 127 | + | ||
| 128 | + ## more tha one word in sentence | ||
| 129 | + if i > 0: | ||
| 130 | + ## Anterior word | ||
| 131 | + listElem = sent[i - 1].split('|') | ||
| 132 | + | ||
| 133 | + ## Saving CoreNLP annotations | ||
| 134 | + lemma0 = listElem[1] | ||
| 135 | + postag0 = listElem[2] | ||
| 136 | + features.update({ | ||
| 137 | + #LemaG anterior | ||
| 138 | + '-1:lemma': lemma0, | ||
| 139 | + #Postag anterior | ||
| 140 | + '-1:postag': postag0, | ||
| 141 | + }) | ||
| 142 | + | ||
| 143 | + ## is not the last word | ||
| 144 | + if i < len(sent) - 1: | ||
| 145 | + ## Posterior word | ||
| 146 | + listElem = sent[i + 1].split('|') | ||
| 147 | + ## Saving CoreNLP annotations | ||
| 148 | + lemma2 = listElem[1] | ||
| 149 | + postag2 = listElem[2] | ||
| 150 | + | ||
| 151 | + features.update({ | ||
| 152 | + #LemaG posterior | ||
| 153 | + '+1:lemma': lemma2, | ||
| 154 | + #Postag posterior | ||
| 155 | + '+1:postag': postag2, | ||
| 156 | + }) | ||
| 157 | + | ||
| 158 | + #=========================== S1 =============================# | ||
| 159 | + ## NAME LEVEL S1 | ||
| 160 | + ## FEATURE TYPE Inner word features | ||
| 161 | + | ||
| 162 | + if S1: | ||
| 163 | + #Add features | ||
| 164 | + features['hUpper']= hUpper(word) | ||
| 165 | + features['hLower']= hUpper(word) | ||
| 166 | + features['hGreek']= hGreek(word) | ||
| 167 | + features['symb']= symb(word) | ||
| 168 | + #word firstChar | ||
| 169 | + features['word[:1]']= word[:1] | ||
| 170 | + #word secondChar | ||
| 171 | + if len(word)>1: | ||
| 172 | + features['word[:2]']= word[:2] | ||
| 173 | + #lemma and postag firstChar | ||
| 174 | + #features['lemma[:1]']= lemma[:1] | ||
| 175 | + features['postag[:1]']= postag[:1] | ||
| 176 | + #lemma and postag secondChar | ||
| 177 | + #if len(lemma)>1: | ||
| 178 | + # features['lemma[:2]']= lemma[:2] | ||
| 179 | + if len(postag)>1: | ||
| 180 | + features['postag[:2]']= postag[:2] | ||
| 181 | + #=========================== S2 =============================# | ||
| 182 | + ## NAME LEVEL S2 | ||
| 183 | + ## FEATURE TYPE Complete word features | ||
| 184 | + | ||
| 185 | + if S2: | ||
| 186 | + #Add features | ||
| 187 | + features['word']= word | ||
| 188 | + features['isUpper']= word.isupper() | ||
| 189 | + features['isLower']= word.islower() | ||
| 190 | + features['isGreek']= isGreek(word) | ||
| 191 | + features['isNumber']= word.isdigit() | ||
| 192 | + ## more tha one word in sentence | ||
| 193 | + if i > 0: | ||
| 194 | + ## Anterior word | ||
| 195 | + listElem = sent[i - 1].split('|') | ||
| 196 | + ## Saving CoreNLP annotations | ||
| 197 | + word0 = listElem[0] | ||
| 198 | + features['-1:word']= word0 | ||
| 199 | + | ||
| 200 | + ## is not the last word | ||
| 201 | + if i < len(sent)-1: | ||
| 202 | + listElem = sent[i + 1].split('|') | ||
| 203 | + ## Saving CoreNLP annotations | ||
| 204 | + word2 = listElem[0] | ||
| 205 | + ## Posterior word | ||
| 206 | + features['+1:word']= word2 | ||
| 207 | + | ||
| 208 | + #=========================== S3 =============================# | ||
| 209 | + ## NAME LEVEL S3 | ||
| 210 | + ## FEATURE TYPE Extended context features | ||
| 211 | + if S3: | ||
| 212 | + ## more tha two words in sentence | ||
| 213 | + if i > 1: | ||
| 214 | + ## two anterior lemma and postag | ||
| 215 | + listElem = sent[i - 2].split('|') | ||
| 216 | + ## Saving CoreNLP annotations | ||
| 217 | + lemma01 = listElem[1] | ||
| 218 | + postag01 = listElem[2] | ||
| 219 | + features['-2:lemma']= lemma01 | ||
| 220 | + features['-2:postag']= postag01 | ||
| 221 | + | ||
| 222 | + ## is not the penultimate word | ||
| 223 | + if i < len(sent) - 2: | ||
| 224 | + listElem = sent[i + 2].split('|') | ||
| 225 | + ## Saving CoreNLP annotations | ||
| 226 | + lemma02 = listElem[1] | ||
| 227 | + postag02 = listElem[2] | ||
| 228 | + ## two posterior lemma and postag | ||
| 229 | + features['+2:lemma']= lemma02 | ||
| 230 | + features['+2:postag']= postag02 | ||
| 231 | + | ||
| 232 | + return features | ||
| 233 | + | ||
| 234 | +def sent2features(sent, S1, S2, S3): | ||
| 235 | + ## Itering in sentence for each word and saving its features | ||
| 236 | + return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))] | ||
| 237 | + | ||
| 238 | +def sent2labels(sent): | ||
| 239 | + ## 3rd position by word is the label | ||
| 240 | + return [elem.split('|')[3] for elem in sent] | ||
| 241 | + | ||
| 242 | +def sent2tokens(sent): | ||
| 243 | + return [token for token, postag, label in sent] | ||
| 244 | + | ||
| 245 | +def print_transitions(trans_features, f): | ||
| 246 | + for (label_from, label_to), weight in trans_features: | ||
| 247 | + f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight)) | ||
| 248 | + | ||
| 249 | +def print_state_features(state_features, f): | ||
| 250 | + for (attr, label), weight in state_features: | ||
| 251 | + f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8"))) | ||
| 252 | + | ||
| 253 | + | ||
| 254 | +__author__ = 'egaytan' | ||
| 255 | + | ||
| 256 | +################################################################## | ||
| 257 | +# MAIN PROGRAM # | ||
| 258 | +################################################################## | ||
| 259 | + | ||
| 260 | +if __name__ == "__main__": | ||
| 261 | + ## Defining parameters | ||
| 262 | + parser = OptionParser() | ||
| 263 | + parser.add_option("--inputPath", dest="inputPath", help="Path of training data set", metavar="PATH") | ||
| 264 | + parser.add_option("--outputPath", dest="outputPath", help="Output path to place output files", metavar="PATH") | ||
| 265 | + parser.add_option("--trainingFile", dest="trainingFile", help="File with training data set", metavar="FILE") | ||
| 266 | + parser.add_option("--testFile", dest="testFile", help="File with test data set", metavar="FILE") | ||
| 267 | + parser.add_option("--Gridname", dest="Gridname", help="Report number run", metavar="FILE") | ||
| 268 | + parser.add_option("--version", dest="version", help="Report file", metavar="FILE") | ||
| 269 | + parser.add_option("--S1", dest="S1", help="Future Type", action="store_true", default=False) | ||
| 270 | + parser.add_option("--S2", dest="S2", help="Future Type", action="store_true", default=False) | ||
| 271 | + parser.add_option("--S3", dest="S3", help="Future Type", action="store_true", default=False) | ||
| 272 | + parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words", action="store_true", default=False) | ||
| 273 | + parser.add_option("--excludeSymbols", dest="excludeSymbols", help="Exclude punctuation marks", action="store_true", default=False) | ||
| 274 | + | ||
| 275 | + | ||
| 276 | + (options, args) = parser.parse_args() | ||
| 277 | + if len(args) > 0: | ||
| 278 | + parser.error("Any parameter given.") | ||
| 279 | + sys.exit(1) | ||
| 280 | + | ||
| 281 | + print('-------------------------------- PARAMETERS --------------------------------') | ||
| 282 | + print("Path of training data set: " + options.inputPath) | ||
| 283 | + print("File with training data set: " + str(options.trainingFile)) | ||
| 284 | + print("Path of test data set: " + options.inputPath) | ||
| 285 | + print("File with test data set: " + str(options.testFile)) | ||
| 286 | + print("Exclude stop words: " + str(options.excludeStopWords)) | ||
| 287 | + print("Levels: " + str(options.S1) + " " + str(options.S2)) | ||
| 288 | + print("Report file: " + str(options.version)) | ||
| 289 | + | ||
| 290 | + | ||
| 291 | + symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{', | ||
| 292 | + '}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...'] | ||
| 293 | + print("Exclude symbols: " + str(options.excludeSymbols)) | ||
| 294 | + | ||
| 295 | + print('-------------------------------- PROCESSING --------------------------------') | ||
| 296 | + print('Reading corpus...') | ||
| 297 | + t0 = time() | ||
| 298 | + | ||
| 299 | + sentencesTrainingData = [] | ||
| 300 | + sentencesTestData = [] | ||
| 301 | + | ||
| 302 | + stopwords = [word for word in stopwords.words('english')] | ||
| 303 | + | ||
| 304 | + with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile: | ||
| 305 | + for line in iFile.readlines(): | ||
| 306 | + listLine = [] | ||
| 307 | + line = line.strip('\n') | ||
| 308 | + for token in line.split(): | ||
| 309 | + if options.excludeStopWords: | ||
| 310 | + listToken = token.split('|') | ||
| 311 | + lemma = listToken[1] | ||
| 312 | + if lemma in stopwords: | ||
| 313 | + continue | ||
| 314 | + if options.excludeSymbols: | ||
| 315 | + listToken = token.split('|') | ||
| 316 | + lemma = listToken[1] | ||
| 317 | + if lemma in symbols: | ||
| 318 | + continue | ||
| 319 | + listLine.append(token) | ||
| 320 | + sentencesTrainingData.append(listLine) | ||
| 321 | + print(" Sentences training data: " + str(len(sentencesTrainingData))) | ||
| 322 | + | ||
| 323 | + with open(os.path.join(options.inputPath, options.testFile), "r") as iFile: | ||
| 324 | + for line in iFile.readlines(): | ||
| 325 | + listLine = [] | ||
| 326 | + line = line.strip('\n') | ||
| 327 | + for token in line.split(): | ||
| 328 | + if options.excludeStopWords: | ||
| 329 | + listToken = token.split('|') | ||
| 330 | + lemma = listToken[1] | ||
| 331 | + if lemma in stopwords: | ||
| 332 | + continue | ||
| 333 | + if options.excludeSymbols: | ||
| 334 | + listToken = token.split('|') | ||
| 335 | + lemma = listToken[1] | ||
| 336 | + if lemma in symbols: | ||
| 337 | + continue | ||
| 338 | + listLine.append(token) | ||
| 339 | + sentencesTestData.append(listLine) | ||
| 340 | + print(" Sentences test data: " + str(len(sentencesTestData))) | ||
| 341 | + | ||
| 342 | + print("Reading corpus done in: %fs" % (time() - t0)) | ||
| 343 | + | ||
| 344 | + print('-------------------------------- FEATURES --------------------------------') | ||
| 345 | + | ||
| 346 | + Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2] | ||
| 347 | + Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2] | ||
| 348 | + print('--------------------------Features Training ---------------------------') | ||
| 349 | + print(DF(list(Dtraning.items()))) | ||
| 350 | + print('--------------------------- FeaturesTest -----------------------------') | ||
| 351 | + print(DF(list(Dtest.items()))) | ||
| 352 | + | ||
| 353 | + t0 = time() | ||
| 354 | + | ||
| 355 | + X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData] | ||
| 356 | + y_train = [sent2labels(s) for s in sentencesTrainingData] | ||
| 357 | + | ||
| 358 | + X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData] | ||
| 359 | + # print X_test | ||
| 360 | + y_test = [sent2labels(s) for s in sentencesTestData] | ||
| 361 | + | ||
| 362 | + # Fixed parameters | ||
| 363 | + # crf = sklearn_crfsuite.CRF( | ||
| 364 | + # algorithm='lbfgs', | ||
| 365 | + # c1=0.1, | ||
| 366 | + # c2=0.1, | ||
| 367 | + # max_iterations=100, | ||
| 368 | + # all_pgossible_transitions=True | ||
| 369 | + # ) | ||
| 370 | + | ||
| 371 | + # Hyperparameter Optimization | ||
| 372 | + crf = sklearn_crfsuite.CRF( | ||
| 373 | + algorithm='lbfgs', | ||
| 374 | + max_iterations=100, | ||
| 375 | + all_possible_transitions=True | ||
| 376 | + ) | ||
| 377 | + params_space = { | ||
| 378 | + 'c1': scipy.stats.expon(scale=0.5), | ||
| 379 | + 'c2': scipy.stats.expon(scale=0.05), | ||
| 380 | + } | ||
| 381 | + | ||
| 382 | + # Original: labels = list(crf.classes_) | ||
| 383 | + # Original: labels.remove('O') | ||
| 384 | + labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH']) | ||
| 385 | + | ||
| 386 | + # use the same metric for evaluation | ||
| 387 | + f1_scorer = make_scorer(metrics.flat_f1_score, | ||
| 388 | + average='weighted', labels=labels) | ||
| 389 | + | ||
| 390 | + # search | ||
| 391 | + rs = RandomizedSearchCV(crf, params_space, | ||
| 392 | + cv=10, | ||
| 393 | + verbose=3, | ||
| 394 | + n_jobs=-1, | ||
| 395 | + n_iter=20, | ||
| 396 | + # n_iter=50, | ||
| 397 | + scoring=f1_scorer) | ||
| 398 | + rs.fit(X_train, y_train) | ||
| 399 | + | ||
| 400 | + # Fixed parameters | ||
| 401 | + # crf.fit(X_train, y_train) | ||
| 402 | + | ||
| 403 | + # Best hiperparameters | ||
| 404 | + # crf = rs.best_estimator_ | ||
| 405 | + | ||
| 406 | + nameReport = str(options.Gridname) + str(options.version) + '.txt' | ||
| 407 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile: | ||
| 408 | + oFile.write("********** TRAINING AND TESTING REPORT **********\n") | ||
| 409 | + oFile.write("Training file: " + options.trainingFile + '\n') | ||
| 410 | + oFile.write('\n') | ||
| 411 | + oFile.write('best params:' + str(rs.best_params_) + '\n') | ||
| 412 | + oFile.write('best CV score:' + str(rs.best_score_) + '\n') | ||
| 413 | + oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000)) | ||
| 414 | + | ||
| 415 | + print("Training done in: %fs" % (time() - t0)) | ||
| 416 | + t0 = time() | ||
| 417 | + | ||
| 418 | + # Update best crf | ||
| 419 | + crf = rs.best_estimator_ | ||
| 420 | + | ||
| 421 | + # Saving model | ||
| 422 | + print(" Saving training model...") | ||
| 423 | + t1 = time() | ||
| 424 | + nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname) + str(options.version) + '.mod' | ||
| 425 | + joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) | ||
| 426 | + print(" Saving training model done in: %fs" % (time() - t1)) | ||
| 427 | + | ||
| 428 | + # Evaluation against test data | ||
| 429 | + y_pred = crf.predict(X_test) | ||
| 430 | + print("*********************************") | ||
| 431 | + print("Prediction done in: %fs" % (time() - t0)) | ||
| 432 | + | ||
| 433 | + # labels = list(crf.classes_) | ||
| 434 | + # labels.remove('O') | ||
| 435 | + | ||
| 436 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile: | ||
| 437 | + oFile.write('\n') | ||
| 438 | + oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels))) | ||
| 439 | + oFile.write('\n') | ||
| 440 | + # labels = list(crf.classes_) | ||
| 441 | + sorted_labels = sorted( | ||
| 442 | + labels, | ||
| 443 | + key=lambda name: (name[1:], name[0]) | ||
| 444 | + ) | ||
| 445 | + oFile.write(metrics.flat_classification_report( | ||
| 446 | + y_test, y_pred, labels=sorted_labels, digits=3 | ||
| 447 | + )) | ||
| 448 | + oFile.write('\n') | ||
| 449 | + | ||
| 450 | + oFile.write("\nTop likely transitions:\n") | ||
| 451 | + print_transitions(Counter(crf.transition_features_).most_common(50), oFile) | ||
| 452 | + oFile.write('\n') | ||
| 453 | + | ||
| 454 | + oFile.write("\nTop unlikely transitions:\n") | ||
| 455 | + print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile) | ||
| 456 | + oFile.write('\n') | ||
| 457 | + | ||
| 458 | + oFile.write("\nTop positive:\n") | ||
| 459 | + print_state_features(Counter(crf.state_features_).most_common(200), oFile) | ||
| 460 | + oFile.write('\n') | ||
| 461 | + | ||
| 462 | + oFile.write("\nTop negative:\n") | ||
| 463 | + print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile) | ||
| 464 | + oFile.write('\n') | ||
| 465 | + |
CRF/bin/training_validation_v13.py
0 → 100644
| 1 | +# -*- coding: UTF-8 -*- | ||
| 2 | + | ||
| 3 | +import os | ||
| 4 | +from itertools import chain | ||
| 5 | +from optparse import OptionParser | ||
| 6 | +from time import time | ||
| 7 | +from collections import Counter | ||
| 8 | +import re | ||
| 9 | + | ||
| 10 | +import nltk | ||
| 11 | +import sklearn | ||
| 12 | +import scipy.stats | ||
| 13 | +import sys | ||
| 14 | + | ||
| 15 | +from sklearn.externals import joblib | ||
| 16 | +from sklearn.metrics import make_scorer | ||
| 17 | +from sklearn.cross_validation import cross_val_score | ||
| 18 | +from sklearn.grid_search import RandomizedSearchCV | ||
| 19 | + | ||
| 20 | +import sklearn_crfsuite | ||
| 21 | +from sklearn_crfsuite import scorers | ||
| 22 | +from sklearn_crfsuite import metrics | ||
| 23 | + | ||
| 24 | +from pandas import DataFrame as DF | ||
| 25 | +from nltk.corpus import stopwords | ||
| 26 | + | ||
| 27 | + | ||
| 28 | +# Objective | ||
| 29 | +# Training and evaluation of CRFs with sklearn-crfsuite. | ||
| 30 | +# | ||
| 31 | +# Input parameters | ||
| 32 | +# --inputPath=PATH Path of training and test data set | ||
| 33 | +# --trainingFile File with training data set | ||
| 34 | +# --testFile File with test data set | ||
| 35 | +# --outputPath=PATH Output path to place output files | ||
| 36 | +# --nameGrid Number of run | ||
| 37 | +# --version Version Report | ||
| 38 | + | ||
| 39 | +# Output | ||
| 40 | +# 1) Best model | ||
| 41 | +# 2) Report | ||
| 42 | + | ||
| 43 | +# Examples | ||
| 44 | +# python training_validation_v10.py | ||
| 45 | +# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 46 | +# --trainingFile training-data-set-70.txt | ||
| 47 | +# --testFile test-data-set-30.txt | ||
| 48 | +# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ | ||
| 49 | +# --version _v1 | ||
| 50 | +# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3 | ||
| 51 | + | ||
| 52 | +################################################################## | ||
| 53 | +# FEATURES # | ||
| 54 | +################################################################## | ||
| 55 | + | ||
| 56 | +#================== COMPLETE WORD FEATURES ======================# | ||
| 57 | + | ||
| 58 | +def isGreek(word): | ||
| 59 | + ## Complete word are greek letters | ||
| 60 | + alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω', | ||
| 61 | + 'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω'] | ||
| 62 | + if word in alphabet: | ||
| 63 | + return True | ||
| 64 | + else: | ||
| 65 | + return False | ||
| 66 | + | ||
| 67 | +#================ INNER OF THE WORD FEATURES ====================# | ||
| 68 | + | ||
| 69 | +def hNumber(word): | ||
| 70 | + ## Al leats has one greek letter | ||
| 71 | + for l in word: | ||
| 72 | + if l.isdigit(): | ||
| 73 | + return True | ||
| 74 | + return False | ||
| 75 | + | ||
| 76 | +def symb(word): | ||
| 77 | + n=0 | ||
| 78 | + ## At least a not alphanumeric character | ||
| 79 | + for l in word: | ||
| 80 | + if l.isdigit(): n = n+1 | ||
| 81 | + if l.isalpha(): n = n+1 | ||
| 82 | + #Exclude Greek letters | ||
| 83 | + if isGreek(l): n = n+1 | ||
| 84 | + | ||
| 85 | + if n<len(word): return True | ||
| 86 | + else: return False | ||
| 87 | + | ||
| 88 | +def hUpper(word): | ||
| 89 | + ## At least an upper letter | ||
| 90 | + for l in word: | ||
| 91 | + if l.isupper(): return True | ||
| 92 | + return False | ||
| 93 | + | ||
| 94 | +def hLower(word): | ||
| 95 | + ## At least a lower letter | ||
| 96 | + for l in word: | ||
| 97 | + if l.islower(): return True | ||
| 98 | + return False | ||
| 99 | + | ||
| 100 | +def hGreek(word): | ||
| 101 | + ## At least a greek letter | ||
| 102 | + for l in word: | ||
| 103 | + if isGreek(l): return True | ||
| 104 | + return False | ||
| 105 | + | ||
| 106 | +#============================FEATURES===========================# | ||
| 107 | + | ||
| 108 | +def word2features(sent, i, S1, S2, S3): | ||
| 109 | + ## Getting word features | ||
| 110 | + | ||
| 111 | + ## Saving CoreNLP annotations | ||
| 112 | + listElem = sent[i].split('|') | ||
| 113 | + word = listElem[0] | ||
| 114 | + lemma = listElem[1] | ||
| 115 | + postag = listElem[2] | ||
| 116 | + #ner = listElem[4] | ||
| 117 | + | ||
| 118 | + #=========================== G =============================# | ||
| 119 | + ## NAME LEVEL G | ||
| 120 | + ## FUTURE TYPE General features | ||
| 121 | + | ||
| 122 | + features = { | ||
| 123 | + ## basal features | ||
| 124 | + 'lemma': lemma, | ||
| 125 | + 'postag': postag | ||
| 126 | + } | ||
| 127 | + | ||
| 128 | + ## more tha one word in sentence | ||
| 129 | + if i > 0: | ||
| 130 | + ## Anterior word | ||
| 131 | + listElem = sent[i - 1].split('|') | ||
| 132 | + | ||
| 133 | + ## Saving CoreNLP annotations | ||
| 134 | + lemma0 = listElem[1] | ||
| 135 | + postag0 = listElem[2] | ||
| 136 | + features.update({ | ||
| 137 | + #LemaG anterior | ||
| 138 | + '-1:lemma': lemma0, | ||
| 139 | + #Postag anterior | ||
| 140 | + '-1:postag': postag0, | ||
| 141 | + }) | ||
| 142 | + | ||
| 143 | + ## is not the last word | ||
| 144 | + if i < len(sent) - 1: | ||
| 145 | + ## Posterior word | ||
| 146 | + listElem = sent[i + 1].split('|') | ||
| 147 | + ## Saving CoreNLP annotations | ||
| 148 | + lemma2 = listElem[1] | ||
| 149 | + postag2 = listElem[2] | ||
| 150 | + | ||
| 151 | + features.update({ | ||
| 152 | + #LemaG posterior | ||
| 153 | + '+1:lemma': lemma2, | ||
| 154 | + #Postag posterior | ||
| 155 | + '+1:postag': postag2, | ||
| 156 | + }) | ||
| 157 | + | ||
| 158 | + #=========================== S1 =============================# | ||
| 159 | + ## NAME LEVEL S1 | ||
| 160 | + ## FEATURE TYPE Inner word features | ||
| 161 | + | ||
| 162 | + if S1: | ||
| 163 | + #Add features | ||
| 164 | + features['hUpper']= hUpper(word) | ||
| 165 | + features['hLower']= hUpper(word) | ||
| 166 | + features['hGreek']= hGreek(word) | ||
| 167 | + features['symb']= symb(word) | ||
| 168 | + ''' | ||
| 169 | + #word firstChar | ||
| 170 | + features['word[:1]']= word[:1] | ||
| 171 | + #word secondChar | ||
| 172 | + if len(word)>1: | ||
| 173 | + features['word[:2]']= word[:2] | ||
| 174 | + ''' | ||
| 175 | + #lemma and postag firstChar | ||
| 176 | + features['lemma[:1]']= lemma[:1] | ||
| 177 | + #features['postag[:1]']= postag[:1] | ||
| 178 | + #lemma and postag secondChar | ||
| 179 | + if len(lemma)>1: | ||
| 180 | + features['lemma[:2]']= lemma[:2] | ||
| 181 | + ''' | ||
| 182 | + if len(postag)>1: | ||
| 183 | + features['postag[:2]']= postag[:2] | ||
| 184 | + ''' | ||
| 185 | + #=========================== S2 =============================# | ||
| 186 | + ## NAME LEVEL S2 | ||
| 187 | + ## FEATURE TYPE Complete word features | ||
| 188 | + | ||
| 189 | + if S2: | ||
| 190 | + #Add features | ||
| 191 | + features['word']= word | ||
| 192 | + features['isUpper']= word.isupper() | ||
| 193 | + features['isLower']= word.islower() | ||
| 194 | + features['isGreek']= isGreek(word) | ||
| 195 | + features['isNumber']= word.isdigit() | ||
| 196 | + ## more tha one word in sentence | ||
| 197 | + if i > 0: | ||
| 198 | + ## Anterior word | ||
| 199 | + listElem = sent[i - 1].split('|') | ||
| 200 | + ## Saving CoreNLP annotations | ||
| 201 | + word0 = listElem[0] | ||
| 202 | + features['-1:word']= word0 | ||
| 203 | + | ||
| 204 | + ## is not the last word | ||
| 205 | + if i < len(sent)-1: | ||
| 206 | + listElem = sent[i + 1].split('|') | ||
| 207 | + ## Saving CoreNLP annotations | ||
| 208 | + word2 = listElem[0] | ||
| 209 | + ## Posterior word | ||
| 210 | + features['+1:word']= word2 | ||
| 211 | + | ||
| 212 | + #=========================== S3 =============================# | ||
| 213 | + ## NAME LEVEL S3 | ||
| 214 | + ## FEATURE TYPE Extended context features | ||
| 215 | + if S3: | ||
| 216 | + ## more tha two words in sentence | ||
| 217 | + if i > 1: | ||
| 218 | + ## two anterior lemma and postag | ||
| 219 | + listElem = sent[i - 2].split('|') | ||
| 220 | + ## Saving CoreNLP annotations | ||
| 221 | + lemma01 = listElem[1] | ||
| 222 | + postag01 = listElem[2] | ||
| 223 | + features['-2:lemma']= lemma01 | ||
| 224 | + features['-2:postag']= postag01 | ||
| 225 | + | ||
| 226 | + ## is not the penultimate word | ||
| 227 | + if i < len(sent) - 2: | ||
| 228 | + listElem = sent[i + 2].split('|') | ||
| 229 | + ## Saving CoreNLP annotations | ||
| 230 | + lemma02 = listElem[1] | ||
| 231 | + postag02 = listElem[2] | ||
| 232 | + ## two posterior lemma and postag | ||
| 233 | + features['+2:lemma']= lemma02 | ||
| 234 | + features['+2:postag']= postag02 | ||
| 235 | + | ||
| 236 | + return features | ||
| 237 | + | ||
| 238 | +def sent2features(sent, S1, S2, S3): | ||
| 239 | + ## Itering in sentence for each word and saving its features | ||
| 240 | + return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))] | ||
| 241 | + | ||
| 242 | +def sent2labels(sent): | ||
| 243 | + ## 3rd position by word is the label | ||
| 244 | + return [elem.split('|')[3] for elem in sent] | ||
| 245 | + | ||
| 246 | +def sent2tokens(sent): | ||
| 247 | + return [token for token, postag, label in sent] | ||
| 248 | + | ||
| 249 | +def print_transitions(trans_features, f): | ||
| 250 | + for (label_from, label_to), weight in trans_features: | ||
| 251 | + f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight)) | ||
| 252 | + | ||
| 253 | +def print_state_features(state_features, f): | ||
| 254 | + for (attr, label), weight in state_features: | ||
| 255 | + f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8"))) | ||
| 256 | + | ||
| 257 | + | ||
| 258 | +__author__ = 'egaytan' | ||
| 259 | + | ||
| 260 | +################################################################## | ||
| 261 | +# MAIN PROGRAM # | ||
| 262 | +################################################################## | ||
| 263 | + | ||
| 264 | +if __name__ == "__main__": | ||
| 265 | + ## Defining parameters | ||
| 266 | + parser = OptionParser() | ||
| 267 | + parser.add_option("--inputPath", dest="inputPath", help="Path of training data set", metavar="PATH") | ||
| 268 | + parser.add_option("--outputPath", dest="outputPath", help="Output path to place output files", metavar="PATH") | ||
| 269 | + parser.add_option("--trainingFile", dest="trainingFile", help="File with training data set", metavar="FILE") | ||
| 270 | + parser.add_option("--testFile", dest="testFile", help="File with test data set", metavar="FILE") | ||
| 271 | + parser.add_option("--Gridname", dest="Gridname", help="Report number run", metavar="FILE") | ||
| 272 | + parser.add_option("--version", dest="version", help="Report file", metavar="FILE") | ||
| 273 | + parser.add_option("--S1", dest="S1", help="Future Type", action="store_true", default=False) | ||
| 274 | + parser.add_option("--S2", dest="S2", help="Future Type", action="store_true", default=False) | ||
| 275 | + parser.add_option("--S3", dest="S3", help="Future Type", action="store_true", default=False) | ||
| 276 | + parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words", action="store_true", default=False) | ||
| 277 | + parser.add_option("--excludeSymbols", dest="excludeSymbols", help="Exclude punctuation marks", action="store_true", default=False) | ||
| 278 | + | ||
| 279 | + | ||
| 280 | + (options, args) = parser.parse_args() | ||
| 281 | + if len(args) > 0: | ||
| 282 | + parser.error("Any parameter given.") | ||
| 283 | + sys.exit(1) | ||
| 284 | + | ||
| 285 | + print('-------------------------------- PARAMETERS --------------------------------') | ||
| 286 | + print("Path of training data set: " + options.inputPath) | ||
| 287 | + print("File with training data set: " + str(options.trainingFile)) | ||
| 288 | + print("Path of test data set: " + options.inputPath) | ||
| 289 | + print("File with test data set: " + str(options.testFile)) | ||
| 290 | + print("Exclude stop words: " + str(options.excludeStopWords)) | ||
| 291 | + print("Levels: " + str(options.S1) + " " + str(options.S2)) | ||
| 292 | + print("Report file: " + str(options.version)) | ||
| 293 | + | ||
| 294 | + | ||
| 295 | + symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{', | ||
| 296 | + '}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...'] | ||
| 297 | + print("Exclude symbols: " + str(options.excludeSymbols)) | ||
| 298 | + | ||
| 299 | + print('-------------------------------- PROCESSING --------------------------------') | ||
| 300 | + print('Reading corpus...') | ||
| 301 | + t0 = time() | ||
| 302 | + | ||
| 303 | + sentencesTrainingData = [] | ||
| 304 | + sentencesTestData = [] | ||
| 305 | + | ||
| 306 | + stopwords = [word for word in stopwords.words('english')] | ||
| 307 | + | ||
| 308 | + with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile: | ||
| 309 | + for line in iFile.readlines(): | ||
| 310 | + listLine = [] | ||
| 311 | + line = line.strip('\n') | ||
| 312 | + for token in line.split(): | ||
| 313 | + if options.excludeStopWords: | ||
| 314 | + listToken = token.split('|') | ||
| 315 | + lemma = listToken[1] | ||
| 316 | + if lemma in stopwords: | ||
| 317 | + continue | ||
| 318 | + if options.excludeSymbols: | ||
| 319 | + listToken = token.split('|') | ||
| 320 | + lemma = listToken[1] | ||
| 321 | + if lemma in symbols: | ||
| 322 | + continue | ||
| 323 | + listLine.append(token) | ||
| 324 | + sentencesTrainingData.append(listLine) | ||
| 325 | + print(" Sentences training data: " + str(len(sentencesTrainingData))) | ||
| 326 | + | ||
| 327 | + with open(os.path.join(options.inputPath, options.testFile), "r") as iFile: | ||
| 328 | + for line in iFile.readlines(): | ||
| 329 | + listLine = [] | ||
| 330 | + line = line.strip('\n') | ||
| 331 | + for token in line.split(): | ||
| 332 | + if options.excludeStopWords: | ||
| 333 | + listToken = token.split('|') | ||
| 334 | + lemma = listToken[1] | ||
| 335 | + if lemma in stopwords: | ||
| 336 | + continue | ||
| 337 | + if options.excludeSymbols: | ||
| 338 | + listToken = token.split('|') | ||
| 339 | + lemma = listToken[1] | ||
| 340 | + if lemma in symbols: | ||
| 341 | + continue | ||
| 342 | + listLine.append(token) | ||
| 343 | + sentencesTestData.append(listLine) | ||
| 344 | + print(" Sentences test data: " + str(len(sentencesTestData))) | ||
| 345 | + | ||
| 346 | + print("Reading corpus done in: %fs" % (time() - t0)) | ||
| 347 | + | ||
| 348 | + print('-------------------------------- FEATURES --------------------------------') | ||
| 349 | + | ||
| 350 | + Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2] | ||
| 351 | + Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2] | ||
| 352 | + print('--------------------------Features Training ---------------------------') | ||
| 353 | + print(DF(list(Dtraning.items()))) | ||
| 354 | + print('--------------------------- FeaturesTest -----------------------------') | ||
| 355 | + print(DF(list(Dtest.items()))) | ||
| 356 | + | ||
| 357 | + t0 = time() | ||
| 358 | + | ||
| 359 | + X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData] | ||
| 360 | + y_train = [sent2labels(s) for s in sentencesTrainingData] | ||
| 361 | + | ||
| 362 | + X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData] | ||
| 363 | + # print X_test | ||
| 364 | + y_test = [sent2labels(s) for s in sentencesTestData] | ||
| 365 | + | ||
| 366 | + # Fixed parameters | ||
| 367 | + # crf = sklearn_crfsuite.CRF( | ||
| 368 | + # algorithm='lbfgs', | ||
| 369 | + # c1=0.1, | ||
| 370 | + # c2=0.1, | ||
| 371 | + # max_iterations=100, | ||
| 372 | + # all_pgossible_transitions=True | ||
| 373 | + # ) | ||
| 374 | + | ||
| 375 | + # Hyperparameter Optimization | ||
| 376 | + crf = sklearn_crfsuite.CRF( | ||
| 377 | + algorithm='lbfgs', | ||
| 378 | + max_iterations=100, | ||
| 379 | + all_possible_transitions=True | ||
| 380 | + ) | ||
| 381 | + params_space = { | ||
| 382 | + 'c1': scipy.stats.expon(scale=0.5), | ||
| 383 | + 'c2': scipy.stats.expon(scale=0.05), | ||
| 384 | + } | ||
| 385 | + | ||
| 386 | + # Original: labels = list(crf.classes_) | ||
| 387 | + # Original: labels.remove('O') | ||
| 388 | + labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH']) | ||
| 389 | + | ||
| 390 | + # use the same metric for evaluation | ||
| 391 | + f1_scorer = make_scorer(metrics.flat_f1_score, | ||
| 392 | + average='weighted', labels=labels) | ||
| 393 | + | ||
| 394 | + # search | ||
| 395 | + rs = RandomizedSearchCV(crf, params_space, | ||
| 396 | + cv=10, | ||
| 397 | + verbose=3, | ||
| 398 | + n_jobs=-1, | ||
| 399 | + n_iter=20, | ||
| 400 | + # n_iter=50, | ||
| 401 | + scoring=f1_scorer) | ||
| 402 | + rs.fit(X_train, y_train) | ||
| 403 | + | ||
| 404 | + # Fixed parameters | ||
| 405 | + # crf.fit(X_train, y_train) | ||
| 406 | + | ||
| 407 | + # Best hiperparameters | ||
| 408 | + # crf = rs.best_estimator_ | ||
| 409 | + | ||
| 410 | + nameReport = str(options.Gridname) + str(options.version) + '.txt' | ||
| 411 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile: | ||
| 412 | + oFile.write("********** TRAINING AND TESTING REPORT **********\n") | ||
| 413 | + oFile.write("Training file: " + options.trainingFile + '\n') | ||
| 414 | + oFile.write('\n') | ||
| 415 | + oFile.write('best params:' + str(rs.best_params_) + '\n') | ||
| 416 | + oFile.write('best CV score:' + str(rs.best_score_) + '\n') | ||
| 417 | + oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000)) | ||
| 418 | + | ||
| 419 | + print("Training done in: %fs" % (time() - t0)) | ||
| 420 | + t0 = time() | ||
| 421 | + | ||
| 422 | + # Update best crf | ||
| 423 | + crf = rs.best_estimator_ | ||
| 424 | + | ||
| 425 | + # Saving model | ||
| 426 | + print(" Saving training model...") | ||
| 427 | + t1 = time() | ||
| 428 | + nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname) + str(options.version) +'.mod' | ||
| 429 | + joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel)) | ||
| 430 | + print(" Saving training model done in: %fs" % (time() - t1)) | ||
| 431 | + | ||
| 432 | + # Evaluation against test data | ||
| 433 | + y_pred = crf.predict(X_test) | ||
| 434 | + print("*********************************") | ||
| 435 | + print("Prediction done in: %fs" % (time() - t0)) | ||
| 436 | + | ||
| 437 | + # labels = list(crf.classes_) | ||
| 438 | + # labels.remove('O') | ||
| 439 | + | ||
| 440 | + with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile: | ||
| 441 | + oFile.write('\n') | ||
| 442 | + oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels))) | ||
| 443 | + oFile.write('\n') | ||
| 444 | + # labels = list(crf.classes_) | ||
| 445 | + sorted_labels = sorted( | ||
| 446 | + labels, | ||
| 447 | + key=lambda name: (name[1:], name[0]) | ||
| 448 | + ) | ||
| 449 | + oFile.write(metrics.flat_classification_report( | ||
| 450 | + y_test, y_pred, labels=sorted_labels, digits=3 | ||
| 451 | + )) | ||
| 452 | + oFile.write('\n') | ||
| 453 | + | ||
| 454 | + oFile.write("\nTop likely transitions:\n") | ||
| 455 | + print_transitions(Counter(crf.transition_features_).most_common(50), oFile) | ||
| 456 | + oFile.write('\n') | ||
| 457 | + | ||
| 458 | + oFile.write("\nTop unlikely transitions:\n") | ||
| 459 | + print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile) | ||
| 460 | + oFile.write('\n') | ||
| 461 | + | ||
| 462 | + oFile.write("\nTop positive:\n") | ||
| 463 | + print_state_features(Counter(crf.state_features_).most_common(200), oFile) | ||
| 464 | + oFile.write('\n') | ||
| 465 | + | ||
| 466 | + oFile.write("\nTop negative:\n") | ||
| 467 | + print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile) | ||
| 468 | + oFile.write('\n') | ||
| 469 | + |
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CRF/models/names.sh
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| 1 | +mv model_S1_False_S2_False_v11_S3_False.mod model_S1_False_S2_False_S3_False_Run_1_v11.mod | ||
| 2 | +mv model_S1_True_S2_False_v11_S3_False.mod model_S1_True_S2_False_S3_False_Run_2_v11.mod | ||
| 3 | +mv model_S1_False_S2_True_v11_S3_False.mod model_S1_False_S2_True_S3_False_Run_3_v11.mod | ||
| 4 | +mv model_S1_True_S2_True_v11_S3_False.mod model_S1_True_S2_True_S3_False_Run_4_v11.mod | ||
| 5 | +mv model_S1_False_S2_False_v11_S3_True.mod model_S1_False_S2_False_S3_True_Run_5_v11.mod | ||
| 6 | +mv model_S1_True_S2_False_v11_S3_True.mod model_S1_True_S2_False_S3_True_Run_6_v11.mod | ||
| 7 | +mv model_S1_False_S2_True_v11_S3_True.mod model_S1_False_S2_True_S3_True_Run_7_v11.mod | ||
| 8 | +mv model_S1_True_S2_True_v11_S3_True.mod model_S1_True_S2_True_S3_True_Run_8_v11.mod |
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CRF/outputs/Run_1.txt
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| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003697s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +--------------------------- FeaturesTest ----------------------------- | ||
| 23 | + 0 1 | ||
| 24 | +0 lemma delta-arca | ||
| 25 | +1 postag NN | ||
| 26 | +2 -1:lemma _ | ||
| 27 | +3 -1:postag NN | ||
| 28 | +4 +1:lemma _ | ||
| 29 | +5 +1:postag CD | ||
| 30 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 31 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197 ................... | ||
| 32 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197, score=0.754459 - 0.9s | ||
| 33 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003 ................... | ||
| 34 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003, score=0.884863 - 1.0s | ||
| 35 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252 .................. | ||
| 36 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252, score=0.921051 - 1.0s | ||
| 37 | +[CV] c1=0.36321959660359887, c2=0.030083524897554965 ................. | ||
| 38 | +[CV] c1=0.36321959660359887, c2=0.030083524897554965, score=0.708368 - 1.1s | ||
| 39 | +[CV] c1=0.25820273038993297, c2=0.1449995527843055 ................... | ||
| 40 | +[CV] c1=0.25820273038993297, c2=0.1449995527843055, score=0.823525 - 1.0s | ||
| 41 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197 ................... | ||
| 42 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197, score=0.686315 - 0.9s | ||
| 43 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003 ................... | ||
| 44 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003, score=0.797169 - 1.0s | ||
| 45 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252 .................. | ||
| 46 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252, score=0.891872 - 1.1s | ||
| 47 | +[CV] c1=0.36321959660359887, c2=0.030083524897554965 ................. | ||
| 48 | +[CV] c1=0.36321959660359887, c2=0.030083524897554965, score=0.827517 - 1.0s | ||
| 49 | +[CV] c1=0.25820273038993297, c2=0.1449995527843055 ................... | ||
| 50 | +[CV] c1=0.25820273038993297, c2=0.1449995527843055, score=0.790114 - 1.1s | ||
| 51 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197 ................... | ||
| 52 | +[CV] c1=1.1447553603576668, c2=0.01990190550729197, score=0.846283 - 1.0s | ||
| 53 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003 ................... | ||
| 54 | +[CV] c1=0.5538405782197408, c2=0.07960946817558003, score=0.794216 - 1.0s | ||
| 55 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252 .................. | ||
| 56 | +[CV] c1=0.14843910146742284, c2=0.03226312504680252, score=0.794216 - 1.1s | ||
| 57 | +[CV] c1=0.36321959660359887, c2=0.030083524897554965 ................. | ||
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| 411 | +[CV] c1=0.4716413701252996, c2=0.020707741802851287 .................. | ||
| 412 | +[CV] c1=0.4716413701252996, c2=0.020707741802851287, score=0.812884 - 1.1s | ||
| 413 | +[CV] c1=1.3109075902903429, c2=0.0987913465628396 .................... | ||
| 414 | +[CV] c1=1.3109075902903429, c2=0.0987913465628396, score=0.746345 - 1.1s | ||
| 415 | +[CV] c1=0.19892136084009834, c2=0.0215890963028946 ................... | ||
| 416 | +[CV] c1=0.19892136084009834, c2=0.0215890963028946, score=0.906540 - 1.1s | ||
| 417 | +[CV] c1=0.6236675675631103, c2=0.08801024577462967 ................... | ||
| 418 | +[CV] c1=0.6236675675631103, c2=0.08801024577462967, score=0.772475 - 1.1s | ||
| 419 | +[CV] c1=0.06704945233304155, c2=0.06794151143065376 .................. | ||
| 420 | +[CV] c1=0.06704945233304155, c2=0.06794151143065376, score=0.876457 - 0.8s | ||
| 421 | +Training done in: 6.765294s | ||
| 422 | + Saving training model... | ||
| 423 | + Saving training model done in: 0.016333s | ||
| 424 | +********************************* | ||
| 425 | +Prediction done in: 0.029945s |
CRF/outputs/Run_2.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003524s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 lemma[:1] 2 | ||
| 27 | +--------------------------- FeaturesTest ----------------------------- | ||
| 28 | + 0 1 | ||
| 29 | +0 lemma delta-arca | ||
| 30 | +1 postag NN | ||
| 31 | +2 -1:lemma _ | ||
| 32 | +3 -1:postag NN | ||
| 33 | +4 +1:lemma _ | ||
| 34 | +5 +1:postag CD | ||
| 35 | +6 hUpper True | ||
| 36 | +7 hLower True | ||
| 37 | +8 hGreek False | ||
| 38 | +9 symb True | ||
| 39 | +10 lemma[:1] d | ||
| 40 | +11 lemma[:2] de | ||
| 41 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 42 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 43 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.903013 - 1.0s | ||
| 44 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 45 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.823347 - 1.2s | ||
| 46 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 47 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.826770 - 1.3s | ||
| 48 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 49 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.804632 - 1.3s | ||
| 50 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 51 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.822297 - 1.3s | ||
| 52 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 53 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.768346 - 1.2s | ||
| 54 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 55 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.914124 - 1.2s | ||
| 56 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 57 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.826784 - 1.2s | ||
| 58 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 59 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.818942 - 1.2s | ||
| 60 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 61 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.813100 - 1.4s | ||
| 62 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 63 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.839590 - 1.2s | ||
| 64 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 65 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.920107 - 1.2s | ||
| 66 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 67 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.914124 - 1.3s | ||
| 68 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 69 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.832633 - 1.3s | ||
| 70 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 71 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.914124 - 1.2s | ||
| 72 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 73 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.845585 - 1.0s | ||
| 74 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 75 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.768346 - 1.4s | ||
| 76 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 77 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.794216 - 1.3s | ||
| 78 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 79 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.914573 - 1.2s | ||
| 80 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 81 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.741087 - 1.4s | ||
| 82 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 83 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.822003 - 1.1s | ||
| 84 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 85 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.858878 - 1.3s | ||
| 86 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 87 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.927031 - 1.2s | ||
| 88 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 89 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.858878 - 1.3s | ||
| 90 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 91 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.830456 - 1.3s | ||
| 92 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 93 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.885830 - 1.2s | ||
| 94 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 95 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.794216 - 1.4s | ||
| 96 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 97 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.839590 - 1.2s | ||
| 98 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 99 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.799176 - 1.4s | ||
| 100 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 101 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.851102 - 1.3s | ||
| 102 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 103 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.923528 - 1.4s | ||
| 104 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734 ................. | ||
| 105 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734, score=0.820019 - 1.2s | ||
| 106 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376 ................. | ||
| 107 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376, score=0.920107 - 1.2s | ||
| 108 | +[CV] c1=2.333584831476656, c2=0.013244261040358064 ................... | ||
| 109 | +[CV] c1=2.333584831476656, c2=0.013244261040358064, score=0.665260 - 1.1s | ||
| 110 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 111 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.908120 - 1.3s | ||
| 112 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258 .................. | ||
| 113 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258, score=0.839590 - 1.3s | ||
| 114 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734 ................. | ||
| 115 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734, score=0.794216 - 1.3s | ||
| 116 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019 .................. | ||
| 117 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019, score=0.869411 - 1.2s | ||
| 118 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963 ................. | ||
| 119 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963, score=0.794216 - 1.1s | ||
| 120 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 121 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.772731 - 1.1s | ||
| 122 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 123 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.820019 - 1.1s | ||
| 124 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 125 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.807863 - 1.4s | ||
| 126 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 127 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.768346 - 1.3s | ||
| 128 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 129 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.768346 - 1.3s | ||
| 130 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 131 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.794216 - 1.3s | ||
| 132 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 133 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.914124 - 1.4s | ||
| 134 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734 ................. | ||
| 135 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734, score=0.854074 - 1.3s | ||
| 136 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019 .................. | ||
| 137 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019, score=0.822253 - 1.1s | ||
| 138 | +[CV] c1=2.333584831476656, c2=0.013244261040358064 ................... | ||
| 139 | +[CV] c1=2.333584831476656, c2=0.013244261040358064, score=0.746818 - 1.3s | ||
| 140 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 141 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.897054 - 1.1s | ||
| 142 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 143 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.857708 - 1.2s | ||
| 144 | +[CV] c1=0.098397359682104, c2=0.018958226770139863 ................... | ||
| 145 | +[CV] c1=0.098397359682104, c2=0.018958226770139863, score=0.847686 - 1.4s | ||
| 146 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376 ................. | ||
| 147 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376, score=0.914573 - 1.2s | ||
| 148 | +[CV] c1=2.333584831476656, c2=0.013244261040358064 ................... | ||
| 149 | +[CV] c1=2.333584831476656, c2=0.013244261040358064, score=0.706226 - 1.3s | ||
| 150 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 151 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.674835 - 1.2s | ||
| 152 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 153 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.796207 - 1.3s | ||
| 154 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711 .................. | ||
| 155 | +[CV] c1=0.14504807394901736, c2=0.07115988818379711, score=0.830456 - 1.3s | ||
| 156 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376 ................. | ||
| 157 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376, score=0.801006 - 1.4s | ||
| 158 | +[CV] c1=2.333584831476656, c2=0.013244261040358064 ................... | ||
| 159 | +[CV] c1=2.333584831476656, c2=0.013244261040358064, score=0.824189 - 1.3s | ||
| 160 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 161 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.789187 - 1.3s | ||
| 162 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258 .................. | ||
| 163 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258, score=0.768346 - 1.3s | ||
| 164 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734 ................. | ||
| 165 | +[CV] c1=0.049883149420407336, c2=0.07084188092752734, score=0.768346 - 1.3s | ||
| 166 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019 .................. | ||
| 167 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019, score=0.909849 - 1.2s | ||
| 168 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963 ................. | ||
| 169 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963, score=0.826784 - 1.1s | ||
| 170 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 171 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.829732 - 1.2s | ||
| 172 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 173 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.917297 - 1.2s | ||
| 174 | +[CV] c1=0.098397359682104, c2=0.018958226770139863 ................... | ||
| 175 | +[CV] c1=0.098397359682104, c2=0.018958226770139863, score=0.823347 - 1.2s | ||
| 176 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914 .................. | ||
| 177 | +[CV] c1=0.09696363230645079, c2=0.05497775519339914, score=0.845585 - 1.3s | ||
| 178 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475 ................... | ||
| 179 | +[CV] c1=0.1708100222872568, c2=0.17867095411785475, score=0.816370 - 1.3s | ||
| 180 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303 .................. | ||
| 181 | +[CV] c1=0.17887820290814255, c2=0.02972437620845303, score=0.932108 - 1.4s | ||
| 182 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565 ................... | ||
| 183 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565, score=0.820852 - 1.3s | ||
| 184 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755 ................. | ||
| 185 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755, score=0.920280 - 1.2s | ||
| 186 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054 ................... | ||
| 187 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054, score=0.900097 - 1.2s | ||
| 188 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963 ................. | ||
| 189 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963, score=0.931072 - 1.3s | ||
| 190 | +[CV] c1=0.2359376373743631, c2=0.039179017178379495 .................. | ||
| 191 | +[CV] c1=0.2359376373743631, c2=0.039179017178379495, score=0.923528 - 0.9s | ||
| 192 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111 ................. | ||
| 193 | +[CV] c1=0.2953014349078118, c2=0.0012108405088671111, score=0.807863 - 1.3s | ||
| 194 | +[CV] c1=0.098397359682104, c2=0.018958226770139863 ................... | ||
| 195 | +[CV] c1=0.098397359682104, c2=0.018958226770139863, score=0.834657 - 1.3s | ||
| 196 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376 ................. | ||
| 197 | +[CV] c1=0.23305546986968095, c2=0.053519080953157376, score=0.820852 - 1.2s | ||
| 198 | +[CV] c1=2.333584831476656, c2=0.013244261040358064 ................... | ||
| 199 | +[CV] c1=2.333584831476656, c2=0.013244261040358064, score=0.786768 - 1.3s | ||
| 200 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 201 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.908567 - 1.2s | ||
| 202 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258 .................. | ||
| 203 | +[CV] c1=0.06034444472286749, c2=0.04518594376646258, score=0.914124 - 1.2s | ||
| 204 | +[CV] c1=0.098397359682104, c2=0.018958226770139863 ................... | ||
| 205 | +[CV] c1=0.098397359682104, c2=0.018958226770139863, score=0.935664 - 1.3s | ||
| 206 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019 .................. | ||
| 207 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019, score=0.741087 - 1.3s | ||
| 208 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963 ................. | ||
| 209 | +[CV] c1=0.13330184503096318, c2=0.015952382909212963, score=0.940579 - 1.1s | ||
| 210 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856 .................. | ||
| 211 | +[CV] c1=1.7637796840994346, c2=0.051521349900768856, score=0.736415 - 1.2s | ||
| 212 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463 ................... | ||
| 213 | +[CV] c1=0.0505702396295773, c2=0.03724107191018463, score=0.927877 - 1.3s | ||
| 214 | +[CV] c1=0.098397359682104, c2=0.018958226770139863 ................... | ||
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| 397 | +[CV] c1=0.5134380380315382, c2=0.007750215333905019, score=0.816050 - 1.4s | ||
| 398 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407 .................. | ||
| 399 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407, score=0.768346 - 1.3s | ||
| 400 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269 .................. | ||
| 401 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269, score=0.857708 - 1.2s | ||
| 402 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565 ................... | ||
| 403 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565, score=0.948580 - 1.4s | ||
| 404 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755 ................. | ||
| 405 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755, score=0.935664 - 1.3s | ||
| 406 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054 ................... | ||
| 407 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054, score=0.934521 - 1.3s | ||
| 408 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407 .................. | ||
| 409 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407, score=0.926835 - 1.3s | ||
| 410 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269 .................. | ||
| 411 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269, score=0.830456 - 1.1s | ||
| 412 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565 ................... | ||
| 413 | +[CV] c1=0.2063113369204353, c2=0.15341573930424565, score=0.799176 - 1.3s | ||
| 414 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755 ................. | ||
| 415 | +[CV] c1=0.06894682357962188, c2=0.003142860192667755, score=0.822181 - 1.3s | ||
| 416 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054 ................... | ||
| 417 | +[CV] c1=0.7592894566389128, c2=0.05514117224596054, score=0.856309 - 1.3s | ||
| 418 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407 .................. | ||
| 419 | +[CV] c1=0.05001865029147576, c2=0.03772187459395407, score=0.864170 - 1.4s | ||
| 420 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269 .................. | ||
| 421 | +[CV] c1=0.2879622492417609, c2=0.003122804893055269, score=0.923528 - 1.1s | ||
| 422 | +Training done in: 8.470806s | ||
| 423 | + Saving training model... | ||
| 424 | + Saving training model done in: 0.013144s | ||
| 425 | +********************************* | ||
| 426 | +Prediction done in: 0.032331s |
CRF/outputs/Run_3.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003601s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 word 2 | ||
| 23 | +5 isUpper False | ||
| 24 | +6 isLower False | ||
| 25 | +7 isGreek False | ||
| 26 | +8 isNumber True | ||
| 27 | +9 -1:word fructose | ||
| 28 | +--------------------------- FeaturesTest ----------------------------- | ||
| 29 | + 0 1 | ||
| 30 | +0 lemma delta-arca | ||
| 31 | +1 postag NN | ||
| 32 | +2 -1:lemma _ | ||
| 33 | +3 -1:postag NN | ||
| 34 | +4 +1:lemma _ | ||
| 35 | +5 +1:postag CD | ||
| 36 | +6 word delta-arcA | ||
| 37 | +7 isUpper False | ||
| 38 | +8 isLower False | ||
| 39 | +9 isGreek False | ||
| 40 | +10 isNumber False | ||
| 41 | +11 -1:word _ | ||
| 42 | +12 +1:word _ | ||
| 43 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 44 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629 .................. | ||
| 45 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629, score=0.930900 - 1.3s | ||
| 46 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356 ................... | ||
| 47 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356, score=0.928690 - 1.3s | ||
| 48 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755 ................ | ||
| 49 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755, score=0.930828 - 1.4s | ||
| 50 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 51 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.683821 - 1.4s | ||
| 52 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 53 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.719421 - 1.0s | ||
| 54 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 55 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.867080 - 1.4s | ||
| 56 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 57 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.756173 - 1.3s | ||
| 58 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 59 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.773435 - 1.2s | ||
| 60 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 61 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.795085 - 1.5s | ||
| 62 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 63 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.684686 - 1.2s | ||
| 64 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 65 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.684280 - 1.5s | ||
| 66 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 67 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.856192 - 1.4s | ||
| 68 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 69 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.859281 - 1.3s | ||
| 70 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 71 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.870142 - 1.4s | ||
| 72 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927 ................ | ||
| 73 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927, score=0.849145 - 1.1s | ||
| 74 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 75 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.954622 - 1.4s | ||
| 76 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 77 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.780437 - 1.3s | ||
| 78 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 79 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.876548 - 1.3s | ||
| 80 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 81 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.846283 - 1.4s | ||
| 82 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 83 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.848732 - 1.1s | ||
| 84 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 85 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.853491 - 1.3s | ||
| 86 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 87 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.788111 - 1.4s | ||
| 88 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 89 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.926918 - 1.4s | ||
| 90 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 91 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.757382 - 1.4s | ||
| 92 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927 ................ | ||
| 93 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927, score=0.927937 - 1.1s | ||
| 94 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 95 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.935212 - 1.3s | ||
| 96 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 97 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.772475 - 1.4s | ||
| 98 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734 .................. | ||
| 99 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734, score=0.693707 - 1.4s | ||
| 100 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272 ................... | ||
| 101 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272, score=0.785527 - 1.2s | ||
| 102 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 103 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.760702 - 1.2s | ||
| 104 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 105 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.920093 - 1.3s | ||
| 106 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 107 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.859588 - 1.4s | ||
| 108 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 109 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.855506 - 1.3s | ||
| 110 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 111 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.828806 - 1.4s | ||
| 112 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 113 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.890908 - 1.1s | ||
| 114 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 115 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.794216 - 1.3s | ||
| 116 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 117 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.572747 - 1.4s | ||
| 118 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 119 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.789760 - 1.5s | ||
| 120 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 121 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.740710 - 1.4s | ||
| 122 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927 ................ | ||
| 123 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927, score=0.814733 - 1.4s | ||
| 124 | +[CV] c1=0.41373565924979, c2=0.09238653639376901 ..................... | ||
| 125 | +[CV] c1=0.41373565924979, c2=0.09238653639376901, score=0.879946 - 1.3s | ||
| 126 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224 ................. | ||
| 127 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224, score=0.794216 - 1.4s | ||
| 128 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734 .................. | ||
| 129 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734, score=0.795622 - 1.2s | ||
| 130 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272 ................... | ||
| 131 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272, score=0.926918 - 1.2s | ||
| 132 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927 ................ | ||
| 133 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927, score=0.915929 - 1.2s | ||
| 134 | +[CV] c1=0.41373565924979, c2=0.09238653639376901 ..................... | ||
| 135 | +[CV] c1=0.41373565924979, c2=0.09238653639376901, score=0.636415 - 1.4s | ||
| 136 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224 ................. | ||
| 137 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224, score=0.926918 - 1.3s | ||
| 138 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734 .................. | ||
| 139 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734, score=0.773435 - 1.2s | ||
| 140 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 141 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.700902 - 1.4s | ||
| 142 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737 .................. | ||
| 143 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737, score=0.865716 - 1.3s | ||
| 144 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274 .................. | ||
| 145 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274, score=0.854812 - 1.2s | ||
| 146 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092 ................... | ||
| 147 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092, score=0.785802 - 1.2s | ||
| 148 | +[CV] c1=1.652119003219986, c2=0.10376523465777213 .................... | ||
| 149 | +[CV] c1=1.652119003219986, c2=0.10376523465777213, score=0.643879 - 1.2s | ||
| 150 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272 ................... | ||
| 151 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272, score=0.904039 - 1.1s | ||
| 152 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 153 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.824559 - 1.3s | ||
| 154 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 155 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.835066 - 1.4s | ||
| 156 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224 ................. | ||
| 157 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224, score=0.835213 - 1.3s | ||
| 158 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 159 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.928690 - 1.3s | ||
| 160 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 161 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.896763 - 1.4s | ||
| 162 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737 .................. | ||
| 163 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737, score=0.678563 - 1.4s | ||
| 164 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274 .................. | ||
| 165 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274, score=0.852298 - 1.2s | ||
| 166 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224 ................. | ||
| 167 | +[CV] c1=0.24725553901263866, c2=0.048170961867498224, score=0.785482 - 1.2s | ||
| 168 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734 .................. | ||
| 169 | +[CV] c1=0.7251994052584196, c2=0.059043207959615734, score=0.859281 - 1.3s | ||
| 170 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272 ................... | ||
| 171 | +[CV] c1=0.5640531474503676, c2=0.06464287784131272, score=0.799176 - 1.3s | ||
| 172 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 173 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.792579 - 1.2s | ||
| 174 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 175 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.926918 - 1.3s | ||
| 176 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 177 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.890908 - 1.3s | ||
| 178 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 179 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.674636 - 1.4s | ||
| 180 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 181 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.560775 - 1.5s | ||
| 182 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927 ................ | ||
| 183 | +[CV] c1=0.002053052959069552, c2=0.018920275579881927, score=0.826731 - 1.2s | ||
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| 364 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274 .................. | ||
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| 366 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092 ................... | ||
| 367 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092, score=0.533174 - 1.4s | ||
| 368 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 369 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.834805 - 1.3s | ||
| 370 | +[CV] c1=0.7292179112540754, c2=0.004120725812307264 .................. | ||
| 371 | +[CV] c1=0.7292179112540754, c2=0.004120725812307264, score=0.800642 - 1.2s | ||
| 372 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737 .................. | ||
| 373 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737, score=0.772475 - 1.4s | ||
| 374 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274 .................. | ||
| 375 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274, score=0.930828 - 1.3s | ||
| 376 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092 ................... | ||
| 377 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092, score=0.717659 - 1.4s | ||
| 378 | +[CV] c1=1.652119003219986, c2=0.10376523465777213 .................... | ||
| 379 | +[CV] c1=1.652119003219986, c2=0.10376523465777213, score=0.690777 - 1.4s | ||
| 380 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 381 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.808985 - 1.2s | ||
| 382 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629 .................. | ||
| 383 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629, score=0.890908 - 1.3s | ||
| 384 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356 ................... | ||
| 385 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356, score=0.773435 - 1.2s | ||
| 386 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092 ................... | ||
| 387 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092, score=0.666013 - 1.4s | ||
| 388 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 389 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.853328 - 1.5s | ||
| 390 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 391 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.862849 - 1.1s | ||
| 392 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629 .................. | ||
| 393 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629, score=0.594163 - 1.4s | ||
| 394 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356 ................... | ||
| 395 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356, score=0.863495 - 1.3s | ||
| 396 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755 ................ | ||
| 397 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755, score=0.856072 - 1.4s | ||
| 398 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 399 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.863576 - 1.3s | ||
| 400 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 401 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.941978 - 1.1s | ||
| 402 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737 .................. | ||
| 403 | +[CV] c1=0.9221917662018542, c2=0.005799172918219737, score=0.876548 - 1.4s | ||
| 404 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274 .................. | ||
| 405 | +[CV] c1=0.019312034848527993, c2=0.0625879432690274, score=0.849711 - 1.3s | ||
| 406 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092 ................... | ||
| 407 | +[CV] c1=2.6412622667185475, c2=0.03736596703804092, score=0.853878 - 1.4s | ||
| 408 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 409 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.683171 - 1.4s | ||
| 410 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 411 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.803015 - 1.2s | ||
| 412 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629 .................. | ||
| 413 | +[CV] c1=0.935722192523284, c2=0.0005318801626229629, score=0.678563 - 1.4s | ||
| 414 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356 ................... | ||
| 415 | +[CV] c1=0.6760058051882148, c2=0.00456290903506356, score=0.786229 - 1.4s | ||
| 416 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755 ................ | ||
| 417 | +[CV] c1=0.025397838188738985, c2=0.010943674737961755, score=0.946871 - 1.4s | ||
| 418 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095 ................. | ||
| 419 | +[CV] c1=0.23160144515790687, c2=0.008798280691368095, score=0.922832 - 1.3s | ||
| 420 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 421 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.892921 - 1.1s | ||
| 422 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696 ................... | ||
| 423 | +[CV] c1=0.7824372927862602, c2=0.32105281575317696, score=0.553702 - 1.1s | ||
| 424 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701 .................. | ||
| 425 | +[CV] c1=0.17393534309447636, c2=0.03996743049378701, score=0.839700 - 1.1s | ||
| 426 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455 .................. | ||
| 427 | +[CV] c1=1.0739040365330779, c2=0.014049858881180455, score=0.690587 - 1.3s | ||
| 428 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422 .................. | ||
| 429 | +[CV] c1=0.7019199343375351, c2=0.014002713155773422, score=0.714206 - 1.4s | ||
| 430 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343 ................... | ||
| 431 | +[CV] c1=1.4843188945989627, c2=0.06435826732715343, score=0.648506 - 1.4s | ||
| 432 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883 .................. | ||
| 433 | +[CV] c1=0.17593338376582365, c2=0.04437736465223883, score=0.813649 - 1.0s | ||
| 434 | +Training done in: 8.711573s | ||
| 435 | + Saving training model... | ||
| 436 | + Saving training model done in: 0.013376s | ||
| 437 | +********************************* | ||
| 438 | +Prediction done in: 0.034608s |
CRF/outputs/Run_4.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003628s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 lemma[:1] 2 | ||
| 27 | +9 word 2 | ||
| 28 | +10 isUpper False | ||
| 29 | +11 isLower False | ||
| 30 | +12 isGreek False | ||
| 31 | +13 isNumber True | ||
| 32 | +14 -1:word fructose | ||
| 33 | +--------------------------- FeaturesTest ----------------------------- | ||
| 34 | + 0 1 | ||
| 35 | +0 lemma delta-arca | ||
| 36 | +1 postag NN | ||
| 37 | +2 -1:lemma _ | ||
| 38 | +3 -1:postag NN | ||
| 39 | +4 +1:lemma _ | ||
| 40 | +5 +1:postag CD | ||
| 41 | +6 hUpper True | ||
| 42 | +7 hLower True | ||
| 43 | +8 hGreek False | ||
| 44 | +9 symb True | ||
| 45 | +10 lemma[:1] d | ||
| 46 | +11 lemma[:2] de | ||
| 47 | +12 word delta-arcA | ||
| 48 | +13 isUpper False | ||
| 49 | +14 isLower False | ||
| 50 | +15 isGreek False | ||
| 51 | +16 isNumber False | ||
| 52 | +17 -1:word _ | ||
| 53 | +18 +1:word _ | ||
| 54 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 55 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089 .................. | ||
| 56 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089, score=0.946646 - 1.6s | ||
| 57 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215 .................. | ||
| 58 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215, score=0.864170 - 1.6s | ||
| 59 | +[CV] c1=1.129501798705037, c2=0.020140916704590495 ................... | ||
| 60 | +[CV] c1=1.129501798705037, c2=0.020140916704590495, score=0.807845 - 1.7s | ||
| 61 | +[CV] c1=1.119719790930437, c2=0.054437062769718686 ................... | ||
| 62 | +[CV] c1=1.119719790930437, c2=0.054437062769718686, score=0.929494 - 1.6s | ||
| 63 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615 .................. | ||
| 64 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615, score=0.803340 - 1.4s | ||
| 65 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 66 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.840339 - 1.6s | ||
| 67 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 68 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.923027 - 1.5s | ||
| 69 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 70 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.798710 - 1.6s | ||
| 71 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 72 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.926918 - 1.5s | ||
| 73 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615 .................. | ||
| 74 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615, score=0.837807 - 1.2s | ||
| 75 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 76 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.714781 - 1.6s | ||
| 77 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 78 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.820752 - 1.5s | ||
| 79 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 80 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.743438 - 1.5s | ||
| 81 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 82 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.830582 - 1.6s | ||
| 83 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653 ................ | ||
| 84 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653, score=0.884496 - 1.4s | ||
| 85 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 86 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.929494 - 1.5s | ||
| 87 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 88 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.908120 - 1.5s | ||
| 89 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 90 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.913219 - 1.5s | ||
| 91 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 92 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.742060 - 1.6s | ||
| 93 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615 .................. | ||
| 94 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615, score=0.904631 - 1.4s | ||
| 95 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 96 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.852640 - 1.5s | ||
| 97 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 98 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.830314 - 1.5s | ||
| 99 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 100 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.643754 - 1.6s | ||
| 101 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 102 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.815575 - 1.6s | ||
| 103 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615 .................. | ||
| 104 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615, score=0.760326 - 1.4s | ||
| 105 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 106 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.913219 - 1.5s | ||
| 107 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 108 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.742060 - 1.7s | ||
| 109 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 110 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.817039 - 1.7s | ||
| 111 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 112 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.837271 - 1.6s | ||
| 113 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615 .................. | ||
| 114 | +[CV] c1=0.10224977118326696, c2=0.08574073868552615, score=0.932576 - 1.6s | ||
| 115 | +[CV] c1=0.2482723614159239, c2=0.0959138388411172 .................... | ||
| 116 | +[CV] c1=0.2482723614159239, c2=0.0959138388411172, score=0.830873 - 1.4s | ||
| 117 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 118 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.820852 - 1.6s | ||
| 119 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05 ................. | ||
| 120 | +[CV] c1=1.1633545759416617, c2=4.814017520065372e-05, score=0.844732 - 1.6s | ||
| 121 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547 ................... | ||
| 122 | +[CV] c1=0.1252600216535052, c2=0.03782809818801547, score=0.924267 - 1.5s | ||
| 123 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653 ................ | ||
| 124 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653, score=0.839590 - 1.5s | ||
| 125 | +[CV] c1=0.2482723614159239, c2=0.0959138388411172 .................... | ||
| 126 | +[CV] c1=0.2482723614159239, c2=0.0959138388411172, score=0.830314 - 1.5s | ||
| 127 | +[CV] c1=1.0317333456990663, c2=0.008270998659918627 .................. | ||
| 128 | +[CV] c1=1.0317333456990663, c2=0.008270998659918627, score=0.817039 - 1.5s | ||
| 129 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227 .................. | ||
| 130 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227, score=0.798710 - 1.6s | ||
| 131 | +[CV] c1=0.28189060423376666, c2=0.03192405059605604 .................. | ||
| 132 | +[CV] c1=0.28189060423376666, c2=0.03192405059605604, score=0.923027 - 1.3s | ||
| 133 | +[CV] c1=0.07240461944941606, c2=0.016662416283521466 ................. | ||
| 134 | +[CV] c1=0.07240461944941606, c2=0.016662416283521466, score=0.769157 - 1.6s | ||
| 135 | +[CV] c1=1.9180357321696457, c2=0.042428547481606495 .................. | ||
| 136 | +[CV] c1=1.9180357321696457, c2=0.042428547481606495, score=0.645578 - 1.4s | ||
| 137 | +[CV] c1=1.0317333456990663, c2=0.008270998659918627 .................. | ||
| 138 | +[CV] c1=1.0317333456990663, c2=0.008270998659918627, score=0.870314 - 1.5s | ||
| 139 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227 .................. | ||
| 140 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227, score=0.913219 - 1.5s | ||
| 141 | +[CV] c1=0.28189060423376666, c2=0.03192405059605604 .................. | ||
| 142 | +[CV] c1=0.28189060423376666, c2=0.03192405059605604, score=0.820752 - 1.5s | ||
| 143 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653 ................ | ||
| 144 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653, score=0.837807 - 1.3s | ||
| 145 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
| 146 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158, score=0.807845 - 1.6s | ||
| 147 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
| 148 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572, score=0.914885 - 1.7s | ||
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| 330 | +[CV] c1=0.5319496072976292, c2=0.07723824010154955, score=0.799176 - 1.6s | ||
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| 333 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089 .................. | ||
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| 335 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215 .................. | ||
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| 339 | +[CV] c1=1.119719790930437, c2=0.054437062769718686 ................... | ||
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| 343 | +[CV] c1=6.554750484992917e-05, c2=0.05088901762281653 ................ | ||
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| 345 | +[CV] c1=0.2482723614159239, c2=0.0959138388411172 .................... | ||
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| 347 | +[CV] c1=0.35893080441515235, c2=0.06547892139571729 .................. | ||
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| 355 | +[CV] c1=1.1334212532044017, c2=0.007010862010272158 .................. | ||
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| 357 | +[CV] c1=0.24448285707107864, c2=0.07828996063095572 .................. | ||
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| 359 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227 .................. | ||
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| 365 | +[CV] c1=1.9180357321696457, c2=0.042428547481606495 .................. | ||
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| 367 | +[CV] c1=0.35893080441515235, c2=0.06547892139571729 .................. | ||
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| 369 | +[CV] c1=1.3271060079387977, c2=0.016327328938926227 .................. | ||
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| 371 | +[CV] c1=0.28189060423376666, c2=0.03192405059605604 .................. | ||
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| 373 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089 .................. | ||
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| 375 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215 .................. | ||
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| 379 | +[CV] c1=1.119719790930437, c2=0.054437062769718686 ................... | ||
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| 381 | +[CV] c1=0.19452520614152963, c2=0.07921367781554413 .................. | ||
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| 383 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089 .................. | ||
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| 385 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215 .................. | ||
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| 389 | +[CV] c1=1.119719790930437, c2=0.054437062769718686 ................... | ||
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| 391 | +[CV] c1=0.19452520614152963, c2=0.07921367781554413 .................. | ||
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| 393 | +[CV] c1=0.07240461944941606, c2=0.016662416283521466 ................. | ||
| 394 | +[CV] c1=0.07240461944941606, c2=0.016662416283521466, score=0.936198 - 1.7s | ||
| 395 | +[CV] c1=1.9180357321696457, c2=0.042428547481606495 .................. | ||
| 396 | +[CV] c1=1.9180357321696457, c2=0.042428547481606495, score=0.886457 - 1.5s | ||
| 397 | +[CV] c1=0.35893080441515235, c2=0.06547892139571729 .................. | ||
| 398 | +[CV] c1=0.35893080441515235, c2=0.06547892139571729, score=0.929292 - 1.6s | ||
| 399 | +[CV] c1=0.5319496072976292, c2=0.07723824010154955 ................... | ||
| 400 | +[CV] c1=0.5319496072976292, c2=0.07723824010154955, score=0.816050 - 1.6s | ||
| 401 | +[CV] c1=0.26433572200108835, c2=0.022956147621051873 ................. | ||
| 402 | +[CV] c1=0.26433572200108835, c2=0.022956147621051873, score=0.914885 - 1.4s | ||
| 403 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089 .................. | ||
| 404 | +[CV] c1=0.31977486593330257, c2=0.02388226330543089, score=0.920107 - 1.5s | ||
| 405 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215 .................. | ||
| 406 | +[CV] c1=0.07274256234028868, c2=0.03280670164668215, score=0.815575 - 1.7s | ||
| 407 | +[CV] c1=1.129501798705037, c2=0.020140916704590495 ................... | ||
| 408 | +[CV] c1=1.129501798705037, c2=0.020140916704590495, score=0.866417 - 1.5s | ||
| 409 | +[CV] c1=1.119719790930437, c2=0.054437062769718686 ................... | ||
| 410 | +[CV] c1=1.119719790930437, c2=0.054437062769718686, score=0.817039 - 1.6s | ||
| 411 | +[CV] c1=0.19452520614152963, c2=0.07921367781554413 .................. | ||
| 412 | +[CV] c1=0.19452520614152963, c2=0.07921367781554413, score=0.837271 - 1.2s | ||
| 413 | +Training done in: 10.069118s | ||
| 414 | + Saving training model... | ||
| 415 | + Saving training model done in: 0.014113s | ||
| 416 | +********************************* | ||
| 417 | +Prediction done in: 0.045015s |
CRF/outputs/Run_5.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False False | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003560s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 -2:lemma Cra | ||
| 23 | +5 -2:postag NNP | ||
| 24 | +--------------------------- FeaturesTest ----------------------------- | ||
| 25 | + 0 1 | ||
| 26 | +0 lemma delta-arca | ||
| 27 | +1 postag NN | ||
| 28 | +2 -1:lemma _ | ||
| 29 | +3 -1:postag NN | ||
| 30 | +4 +1:lemma _ | ||
| 31 | +5 +1:postag CD | ||
| 32 | +6 -2:lemma affyexp | ||
| 33 | +7 -2:postag JJ | ||
| 34 | +8 +2:lemma glucose | ||
| 35 | +9 +2:postag NN | ||
| 36 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 37 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
| 38 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711, score=0.904317 - 1.1s | ||
| 39 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
| 40 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349, score=0.866353 - 1.2s | ||
| 41 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 42 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.782679 - 1.2s | ||
| 43 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 44 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.844592 - 1.2s | ||
| 45 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 46 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.665848 - 1.2s | ||
| 47 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877 ................... | ||
| 48 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877, score=0.935724 - 1.0s | ||
| 49 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969 ................. | ||
| 50 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969, score=0.866353 - 1.1s | ||
| 51 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 52 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.777310 - 1.2s | ||
| 53 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 54 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.722395 - 1.2s | ||
| 55 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 56 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.566809 - 1.2s | ||
| 57 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
| 58 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711, score=0.889632 - 1.1s | ||
| 59 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
| 60 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349, score=0.893442 - 1.2s | ||
| 61 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 62 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.876191 - 1.2s | ||
| 63 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 64 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.796785 - 1.2s | ||
| 65 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 66 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.808421 - 1.2s | ||
| 67 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
| 68 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711, score=0.884047 - 0.9s | ||
| 69 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
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| 71 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
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| 73 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 74 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.884047 - 1.1s | ||
| 75 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 76 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.681687 - 1.3s | ||
| 77 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615 ................... | ||
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| 79 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477 .................. | ||
| 80 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477, score=0.892074 - 1.1s | ||
| 81 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068 .................... | ||
| 82 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068, score=0.881520 - 1.2s | ||
| 83 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421 .................. | ||
| 84 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421, score=0.874448 - 1.1s | ||
| 85 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753 .................. | ||
| 86 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753, score=0.911799 - 1.1s | ||
| 87 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
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| 89 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969 ................. | ||
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| 91 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068 .................... | ||
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| 93 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421 .................. | ||
| 94 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421, score=0.934983 - 1.1s | ||
| 95 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753 .................. | ||
| 96 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753, score=0.823276 - 1.1s | ||
| 97 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877 ................... | ||
| 98 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877, score=0.854811 - 1.0s | ||
| 99 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
| 100 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349, score=0.842052 - 1.2s | ||
| 101 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 102 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.791206 - 1.2s | ||
| 103 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 104 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.836305 - 1.1s | ||
| 105 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 106 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.652057 - 1.2s | ||
| 107 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
| 108 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711, score=0.934983 - 1.0s | ||
| 109 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
| 110 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349, score=0.722395 - 1.3s | ||
| 111 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 112 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.620509 - 1.3s | ||
| 113 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697 .................. | ||
| 114 | +[CV] c1=0.06582026288344721, c2=0.05682820602315697, score=0.934983 - 1.1s | ||
| 115 | +[CV] c1=2.282844107076996, c2=0.02119864096637369 .................... | ||
| 116 | +[CV] c1=2.282844107076996, c2=0.02119864096637369, score=0.661453 - 1.3s | ||
| 117 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711 ................... | ||
| 118 | +[CV] c1=0.0977605809688258, c2=0.02758489827313711, score=0.864680 - 1.1s | ||
| 119 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349 ................. | ||
| 120 | +[CV] c1=0.14456252410554848, c2=0.011570925278244349, score=0.797327 - 1.3s | ||
| 121 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678 .................. | ||
| 122 | +[CV] c1=1.1460943161482862, c2=0.026153895974214678, score=0.803280 - 1.2s | ||
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| 304 | +[CV] c1=1.1335935695692325, c2=0.045601607829839186, score=0.915357 - 1.2s | ||
| 305 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632 ................. | ||
| 306 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632, score=0.931814 - 1.0s | ||
| 307 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877 ................... | ||
| 308 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877, score=0.722395 - 1.1s | ||
| 309 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969 ................. | ||
| 310 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969, score=0.945584 - 1.2s | ||
| 311 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068 .................... | ||
| 312 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068, score=0.694375 - 1.3s | ||
| 313 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421 .................. | ||
| 314 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421, score=0.796785 - 1.3s | ||
| 315 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632 ................. | ||
| 316 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632, score=0.913214 - 1.2s | ||
| 317 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615 ................... | ||
| 318 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615, score=0.884038 - 1.2s | ||
| 319 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477 .................. | ||
| 320 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477, score=0.874448 - 1.1s | ||
| 321 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647 .................. | ||
| 322 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647, score=0.783151 - 1.3s | ||
| 323 | +[CV] c1=1.1335935695692325, c2=0.045601607829839186 .................. | ||
| 324 | +[CV] c1=1.1335935695692325, c2=0.045601607829839186, score=0.806478 - 1.1s | ||
| 325 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632 ................. | ||
| 326 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632, score=0.796785 - 1.2s | ||
| 327 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 328 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.900231 - 1.3s | ||
| 329 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 330 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.803280 - 1.1s | ||
| 331 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 332 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.934983 - 1.1s | ||
| 333 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 334 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.884047 - 1.1s | ||
| 335 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632 ................. | ||
| 336 | +[CV] c1=0.09869732897335494, c2=0.023452935233575632, score=0.842052 - 1.1s | ||
| 337 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 338 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.805308 - 1.3s | ||
| 339 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 340 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.858736 - 1.1s | ||
| 341 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 342 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.796785 - 1.2s | ||
| 343 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 344 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.844494 - 1.2s | ||
| 345 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 346 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.866806 - 1.0s | ||
| 347 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 348 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.909061 - 1.3s | ||
| 349 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 350 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.620509 - 1.2s | ||
| 351 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 352 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.864680 - 1.2s | ||
| 353 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 354 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.925790 - 1.2s | ||
| 355 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 356 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.803280 - 0.9s | ||
| 357 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 358 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.722395 - 1.3s | ||
| 359 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 360 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.881724 - 1.1s | ||
| 361 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 362 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.841204 - 1.2s | ||
| 363 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 364 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.850992 - 1.2s | ||
| 365 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 366 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.777310 - 1.0s | ||
| 367 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 368 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.893442 - 1.1s | ||
| 369 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 370 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.783151 - 1.2s | ||
| 371 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 372 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.900894 - 1.2s | ||
| 373 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 374 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.889632 - 1.1s | ||
| 375 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 376 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.612120 - 1.1s | ||
| 377 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615 ................... | ||
| 378 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615, score=0.876191 - 1.2s | ||
| 379 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477 .................. | ||
| 380 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477, score=0.796785 - 1.3s | ||
| 381 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647 .................. | ||
| 382 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647, score=0.863374 - 1.2s | ||
| 383 | +[CV] c1=1.1335935695692325, c2=0.045601607829839186 .................. | ||
| 384 | +[CV] c1=1.1335935695692325, c2=0.045601607829839186, score=0.855013 - 1.3s | ||
| 385 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 386 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.697995 - 1.1s | ||
| 387 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877 ................... | ||
| 388 | +[CV] c1=0.05355864292308304, c2=0.0537875036655877, score=0.796785 - 1.2s | ||
| 389 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969 ................. | ||
| 390 | +[CV] c1=0.25945079081541905, c2=0.010397595986328969, score=0.927980 - 1.2s | ||
| 391 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068 .................... | ||
| 392 | +[CV] c1=1.3026087883632722, c2=0.0508985293942068, score=0.816360 - 1.2s | ||
| 393 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421 .................. | ||
| 394 | +[CV] c1=0.12284069651421997, c2=0.07728931563717421, score=0.903868 - 1.3s | ||
| 395 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753 .................. | ||
| 396 | +[CV] c1=0.6718735077115858, c2=0.005745367898834753, score=0.943246 - 1.1s | ||
| 397 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618 ................. | ||
| 398 | +[CV] c1=0.16188575490577647, c2=0.010872239640626618, score=0.927980 - 1.2s | ||
| 399 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081 .................. | ||
| 400 | +[CV] c1=1.0207079957485827, c2=0.004519504876816081, score=0.801130 - 1.2s | ||
| 401 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349 ................. | ||
| 402 | +[CV] c1=0.008182384829545907, c2=0.06802178300715349, score=0.854811 - 1.1s | ||
| 403 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 404 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.796785 - 1.2s | ||
| 405 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 406 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.867125 - 1.0s | ||
| 407 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615 ................... | ||
| 408 | +[CV] c1=1.3592042869129366, c2=0.07476636430730615, score=0.844358 - 1.3s | ||
| 409 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477 .................. | ||
| 410 | +[CV] c1=0.09124769571379378, c2=0.04714194115622477, score=0.935724 - 1.2s | ||
| 411 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647 .................. | ||
| 412 | +[CV] c1=0.8596830833517516, c2=0.025827069173659647, score=0.934870 - 1.2s | ||
| 413 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................ | ||
| 414 | +[CV] c1=0.026900741799377164, c2=0.022970822090078655, score=0.722395 - 1.2s | ||
| 415 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529 ................... | ||
| 416 | +[CV] c1=1.28661684935985, c2=0.0006449825527911529, score=0.806520 - 1.1s | ||
| 417 | +Training done in: 7.767506s | ||
| 418 | + Saving training model... | ||
| 419 | + Saving training model done in: 0.012868s | ||
| 420 | +********************************* | ||
| 421 | +Prediction done in: 0.030345s |
CRF/outputs/Run_6.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True False | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003627s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 lemma[:1] 2 | ||
| 27 | +9 -2:lemma Cra | ||
| 28 | +10 -2:postag NNP | ||
| 29 | +--------------------------- FeaturesTest ----------------------------- | ||
| 30 | + 0 1 | ||
| 31 | +0 lemma delta-arca | ||
| 32 | +1 postag NN | ||
| 33 | +2 -1:lemma _ | ||
| 34 | +3 -1:postag NN | ||
| 35 | +4 +1:lemma _ | ||
| 36 | +5 +1:postag CD | ||
| 37 | +6 hUpper True | ||
| 38 | +7 hLower True | ||
| 39 | +8 hGreek False | ||
| 40 | +9 symb True | ||
| 41 | +10 lemma[:1] d | ||
| 42 | +11 lemma[:2] de | ||
| 43 | +12 -2:lemma affyexp | ||
| 44 | +13 -2:postag JJ | ||
| 45 | +14 +2:lemma glucose | ||
| 46 | +15 +2:postag NN | ||
| 47 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 48 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856 ................... | ||
| 49 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856, score=0.890024 - 1.2s | ||
| 50 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 51 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.880403 - 1.3s | ||
| 52 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142 ................. | ||
| 53 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142, score=0.690341 - 1.5s | ||
| 54 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543 ................... | ||
| 55 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543, score=0.890024 - 1.4s | ||
| 56 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342 .................. | ||
| 57 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342, score=0.869691 - 1.4s | ||
| 58 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856 ................... | ||
| 59 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856, score=0.744355 - 1.2s | ||
| 60 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 61 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.786360 - 1.4s | ||
| 62 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142 ................. | ||
| 63 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142, score=0.846486 - 1.5s | ||
| 64 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543 ................... | ||
| 65 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543, score=0.826344 - 1.4s | ||
| 66 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342 .................. | ||
| 67 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342, score=0.843948 - 1.5s | ||
| 68 | +[CV] c1=0.9074915652851482, c2=0.02543187379319682 ................... | ||
| 69 | +[CV] c1=0.9074915652851482, c2=0.02543187379319682, score=0.804014 - 1.0s | ||
| 70 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 71 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.804464 - 1.5s | ||
| 72 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142 ................. | ||
| 73 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142, score=0.874372 - 1.4s | ||
| 74 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543 ................... | ||
| 75 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543, score=0.852277 - 1.4s | ||
| 76 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342 .................. | ||
| 77 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342, score=0.815278 - 1.5s | ||
| 78 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856 ................... | ||
| 79 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856, score=0.819477 - 1.2s | ||
| 80 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 81 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.898446 - 1.3s | ||
| 82 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142 ................. | ||
| 83 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142, score=0.813790 - 1.5s | ||
| 84 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543 ................... | ||
| 85 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543, score=0.804464 - 1.5s | ||
| 86 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342 .................. | ||
| 87 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342, score=0.867416 - 1.4s | ||
| 88 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856 ................... | ||
| 89 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856, score=0.635785 - 1.2s | ||
| 90 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 91 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.603359 - 1.5s | ||
| 92 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142 ................. | ||
| 93 | +[CV] c1=0.19824146496587178, c2=0.013797540793034142, score=0.908587 - 1.4s | ||
| 94 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543 ................... | ||
| 95 | +[CV] c1=0.7032936215118566, c2=0.10066980363880543, score=0.635785 - 1.6s | ||
| 96 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342 .................. | ||
| 97 | +[CV] c1=0.07958217736939746, c2=0.14062673161534342, score=0.926731 - 1.4s | ||
| 98 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856 ................... | ||
| 99 | +[CV] c1=0.7397744394629708, c2=0.06206881872725856, score=0.934128 - 1.1s | ||
| 100 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925 .................. | ||
| 101 | +[CV] c1=1.2941973038793777, c2=0.037888887789770925, score=0.879259 - 1.5s | ||
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| 284 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 285 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.931609 - 1.6s | ||
| 286 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
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| 288 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 289 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.850736 - 1.3s | ||
| 290 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 291 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.928660 - 1.6s | ||
| 292 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 293 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.804464 - 1.5s | ||
| 294 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 295 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.873246 - 1.4s | ||
| 296 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
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| 298 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566 .................. | ||
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| 300 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 301 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.867416 - 1.5s | ||
| 302 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 303 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.882373 - 1.4s | ||
| 304 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 305 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.679842 - 1.6s | ||
| 306 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 307 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.843508 - 1.2s | ||
| 308 | +[CV] c1=0.9074915652851482, c2=0.02543187379319682 ................... | ||
| 309 | +[CV] c1=0.9074915652851482, c2=0.02543187379319682, score=0.926892 - 1.5s | ||
| 310 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 311 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.884477 - 1.5s | ||
| 312 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 313 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.573561 - 1.5s | ||
| 314 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 315 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.926731 - 1.4s | ||
| 316 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 317 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.820238 - 1.4s | ||
| 318 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566 .................. | ||
| 319 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566, score=0.839383 - 1.4s | ||
| 320 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 321 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.893806 - 1.4s | ||
| 322 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 323 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.847032 - 1.4s | ||
| 324 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 325 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.867416 - 1.3s | ||
| 326 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 327 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.679842 - 1.4s | ||
| 328 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 329 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.876690 - 1.4s | ||
| 330 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 331 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.858068 - 1.5s | ||
| 332 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 333 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.899473 - 1.5s | ||
| 334 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 335 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.889289 - 1.3s | ||
| 336 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 337 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.862528 - 1.1s | ||
| 338 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 339 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.925107 - 1.3s | ||
| 340 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 341 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.727632 - 1.5s | ||
| 342 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 343 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.752973 - 1.5s | ||
| 344 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 345 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.918674 - 1.3s | ||
| 346 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 347 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.810648 - 1.3s | ||
| 348 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566 .................. | ||
| 349 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566, score=0.865193 - 1.5s | ||
| 350 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 351 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.823313 - 1.5s | ||
| 352 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 353 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.789187 - 1.5s | ||
| 354 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 355 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.894971 - 1.4s | ||
| 356 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 357 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.894971 - 1.3s | ||
| 358 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 359 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.925560 - 1.5s | ||
| 360 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 361 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.934128 - 1.4s | ||
| 362 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 363 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.810774 - 1.5s | ||
| 364 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 365 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.824101 - 1.5s | ||
| 366 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 367 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.912532 - 1.0s | ||
| 368 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 369 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.729474 - 1.4s | ||
| 370 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 371 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.826344 - 1.3s | ||
| 372 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 373 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.860604 - 1.5s | ||
| 374 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 375 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.856700 - 1.3s | ||
| 376 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 377 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.926731 - 1.5s | ||
| 378 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566 .................. | ||
| 379 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566, score=0.925560 - 1.5s | ||
| 380 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 381 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.635785 - 1.5s | ||
| 382 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 383 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.868123 - 1.4s | ||
| 384 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 385 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.718921 - 1.5s | ||
| 386 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 387 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.804464 - 1.3s | ||
| 388 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 389 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.813790 - 1.5s | ||
| 390 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 391 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.899473 - 1.5s | ||
| 392 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 393 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.838488 - 1.4s | ||
| 394 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 395 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.917297 - 1.6s | ||
| 396 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 397 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.917115 - 1.0s | ||
| 398 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 399 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.849701 - 1.4s | ||
| 400 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 401 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.804464 - 1.4s | ||
| 402 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 403 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.635785 - 1.5s | ||
| 404 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 405 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.804464 - 1.6s | ||
| 406 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 407 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.950725 - 1.1s | ||
| 408 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027 ................. | ||
| 409 | +[CV] c1=0.17182804981226535, c2=0.002428872515053027, score=0.852560 - 1.5s | ||
| 410 | +[CV] c1=0.792515464743646, c2=0.08571303528654414 .................... | ||
| 411 | +[CV] c1=0.792515464743646, c2=0.08571303528654414, score=0.890024 - 1.4s | ||
| 412 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141 ................... | ||
| 413 | +[CV] c1=0.6990936193316816, c2=0.08367320545887141, score=0.826344 - 1.3s | ||
| 414 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601 .................. | ||
| 415 | +[CV] c1=0.10386122891558734, c2=0.11287630527447601, score=0.843508 - 1.4s | ||
| 416 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368 .................. | ||
| 417 | +[CV] c1=0.10847613698559176, c2=0.14660104510709368, score=0.848700 - 1.5s | ||
| 418 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566 .................. | ||
| 419 | +[CV] c1=0.1784170122015291, c2=0.026491135561658566, score=0.950725 - 1.5s | ||
| 420 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413 .................. | ||
| 421 | +[CV] c1=0.18847706548586152, c2=0.04745708358881413, score=0.925560 - 1.5s | ||
| 422 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273 ................... | ||
| 423 | +[CV] c1=1.5252837713021872, c2=0.40678698586680273, score=0.873786 - 1.5s | ||
| 424 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287 .................. | ||
| 425 | +[CV] c1=0.4861162646712438, c2=0.023054491303730287, score=0.802648 - 1.5s | ||
| 426 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473 ................. | ||
| 427 | +[CV] c1=0.41184922423682174, c2=0.021708165205365473, score=0.694229 - 1.3s | ||
| 428 | +Training done in: 9.576261s | ||
| 429 | + Saving training model... | ||
| 430 | + Saving training model done in: 0.014119s | ||
| 431 | +********************************* | ||
| 432 | +Prediction done in: 0.040201s |
CRF/outputs/Run_7.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: False True | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003575s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 word 2 | ||
| 23 | +5 isUpper False | ||
| 24 | +6 isLower False | ||
| 25 | +7 isGreek False | ||
| 26 | +8 isNumber True | ||
| 27 | +9 -1:word fructose | ||
| 28 | +10 -2:lemma Cra | ||
| 29 | +11 -2:postag NNP | ||
| 30 | +--------------------------- FeaturesTest ----------------------------- | ||
| 31 | + 0 1 | ||
| 32 | +0 lemma delta-arca | ||
| 33 | +1 postag NN | ||
| 34 | +2 -1:lemma _ | ||
| 35 | +3 -1:postag NN | ||
| 36 | +4 +1:lemma _ | ||
| 37 | +5 +1:postag CD | ||
| 38 | +6 word delta-arcA | ||
| 39 | +7 isUpper False | ||
| 40 | +8 isLower False | ||
| 41 | +9 isGreek False | ||
| 42 | +10 isNumber False | ||
| 43 | +11 -1:word _ | ||
| 44 | +12 +1:word _ | ||
| 45 | +13 -2:lemma affyexp | ||
| 46 | +14 -2:postag JJ | ||
| 47 | +15 +2:lemma glucose | ||
| 48 | +16 +2:postag NN | ||
| 49 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 50 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
| 51 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797, score=0.778117 - 1.3s | ||
| 52 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
| 53 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732, score=0.853767 - 1.5s | ||
| 54 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597 .................. | ||
| 55 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597, score=0.931253 - 1.4s | ||
| 56 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
| 57 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722, score=0.593248 - 1.6s | ||
| 58 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806 ................... | ||
| 59 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806, score=0.927267 - 1.4s | ||
| 60 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
| 61 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797, score=0.798145 - 0.9s | ||
| 62 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
| 63 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732, score=0.885817 - 1.6s | ||
| 64 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597 .................. | ||
| 65 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597, score=0.856059 - 1.4s | ||
| 66 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
| 67 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722, score=0.766544 - 1.6s | ||
| 68 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806 ................... | ||
| 69 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806, score=0.897630 - 1.4s | ||
| 70 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
| 71 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797, score=0.885973 - 1.0s | ||
| 72 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
| 73 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732, score=0.866353 - 1.4s | ||
| 74 | +[CV] c1=0.004944498956920931, c2=0.035071672138884735 ................ | ||
| 75 | +[CV] c1=0.004944498956920931, c2=0.035071672138884735, score=0.938157 - 1.5s | ||
| 76 | +[CV] c1=1.064584223532424, c2=0.010140146677527086 ................... | ||
| 77 | +[CV] c1=1.064584223532424, c2=0.010140146677527086, score=0.907533 - 1.5s | ||
| 78 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806 ................... | ||
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| 80 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
| 81 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797, score=0.853967 - 1.2s | ||
| 82 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
| 83 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732, score=0.931991 - 1.5s | ||
| 84 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597 .................. | ||
| 85 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597, score=0.695368 - 1.6s | ||
| 86 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
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| 88 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806 ................... | ||
| 89 | +[CV] c1=0.31697105278313065, c2=0.1627674927353806, score=0.798753 - 1.5s | ||
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| 102 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
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| 104 | +[CV] c1=0.3531857394293691, c2=0.028403481397008597 .................. | ||
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| 106 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
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| 110 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
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| 116 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
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| 120 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
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| 122 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577 ................... | ||
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| 126 | +[CV] c1=1.7692696573575095, c2=0.014769125134101722 .................. | ||
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| 130 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 132 | +[CV] c1=0.24222541975427525, c2=0.02858668949001732 .................. | ||
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| 138 | +[CV] c1=0.6177967356330287, c2=0.0501823034129141 .................... | ||
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| 140 | +[CV] c1=1.1125641437191895, c2=0.06613233343219797 ................... | ||
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| 170 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 172 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577 ................... | ||
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| 178 | +[CV] c1=0.6177967356330287, c2=0.0501823034129141 .................... | ||
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| 180 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 182 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577 ................... | ||
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| 188 | +[CV] c1=0.6177967356330287, c2=0.0501823034129141 .................... | ||
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| 200 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 212 | +[CV] c1=0.3431081113231949, c2=0.10070913156646599 ................... | ||
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| 214 | +[CV] c1=0.6198895769639643, c2=0.0028009206253587736 ................. | ||
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| 218 | +[CV] c1=0.6177967356330287, c2=0.0501823034129141 .................... | ||
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| 220 | +[CV] c1=0.9489299883913463, c2=0.08651523595457483 ................... | ||
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| 222 | +[CV] c1=0.004944498956920931, c2=0.035071672138884735 ................ | ||
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| 224 | +[CV] c1=1.064584223532424, c2=0.010140146677527086 ................... | ||
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| 226 | +[CV] c1=0.35050990293106027, c2=0.062158504077829205 ................. | ||
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| 228 | +[CV] c1=0.11098709687950105, c2=0.0012964773754647193 ................ | ||
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| 230 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 232 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577 ................... | ||
| 233 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577, score=0.939034 - 1.6s | ||
| 234 | +[CV] c1=0.5525328047238595, c2=0.09184172427704333 ................... | ||
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| 238 | +[CV] c1=0.6177967356330287, c2=0.0501823034129141 .................... | ||
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| 240 | +[CV] c1=0.1250735526885256, c2=0.03442702231914988 ................... | ||
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| 242 | +[CV] c1=0.41912632470724565, c2=0.1640401199474577 ................... | ||
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| 244 | +[CV] c1=0.6198895769639643, c2=0.0028009206253587736 ................. | ||
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| 248 | +[CV] c1=0.11098709687950105, c2=0.0012964773754647193 ................ | ||
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| 250 | +[CV] c1=0.4089586111008682, c2=0.07211995679529591 ................... | ||
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| 252 | +[CV] c1=0.3431081113231949, c2=0.10070913156646599 ................... | ||
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| 254 | +[CV] c1=0.5525328047238595, c2=0.09184172427704333 ................... | ||
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| 437 | +[CV] c1=0.004633722592074594, c2=0.10886882710897013, score=0.952892 - 1.5s | ||
| 438 | +[CV] c1=1.138816237017488, c2=0.03695236961293207 .................... | ||
| 439 | +[CV] c1=1.138816237017488, c2=0.03695236961293207, score=0.792413 - 1.2s | ||
| 440 | +Training done in: 9.689625s | ||
| 441 | + Saving training model... | ||
| 442 | + Saving training model done in: 0.014153s | ||
| 443 | +********************************* | ||
| 444 | +Prediction done in: 0.041572s |
CRF/outputs/Run_8.txt
0 → 100644
| 1 | +-------------------------------- PARAMETERS -------------------------------- | ||
| 2 | +Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 3 | +File with training data set: training-data-set-70.txt | ||
| 4 | +Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets | ||
| 5 | +File with test data set: test-data-set-30.txt | ||
| 6 | +Exclude stop words: False | ||
| 7 | +Levels: True True | ||
| 8 | +Report file: _v13 | ||
| 9 | +Exclude symbols: False | ||
| 10 | +-------------------------------- PROCESSING -------------------------------- | ||
| 11 | +Reading corpus... | ||
| 12 | + Sentences training data: 286 | ||
| 13 | + Sentences test data: 123 | ||
| 14 | +Reading corpus done in: 0.003530s | ||
| 15 | +-------------------------------- FEATURES -------------------------------- | ||
| 16 | +--------------------------Features Training --------------------------- | ||
| 17 | + 0 1 | ||
| 18 | +0 lemma 2 | ||
| 19 | +1 postag CD | ||
| 20 | +2 -1:lemma fructose | ||
| 21 | +3 -1:postag NN | ||
| 22 | +4 hUpper False | ||
| 23 | +5 hLower False | ||
| 24 | +6 hGreek False | ||
| 25 | +7 symb False | ||
| 26 | +8 lemma[:1] 2 | ||
| 27 | +9 word 2 | ||
| 28 | +10 isUpper False | ||
| 29 | +11 isLower False | ||
| 30 | +12 isGreek False | ||
| 31 | +13 isNumber True | ||
| 32 | +14 -1:word fructose | ||
| 33 | +15 -2:lemma Cra | ||
| 34 | +16 -2:postag NNP | ||
| 35 | +--------------------------- FeaturesTest ----------------------------- | ||
| 36 | + 0 1 | ||
| 37 | +0 lemma delta-arca | ||
| 38 | +1 postag NN | ||
| 39 | +2 -1:lemma _ | ||
| 40 | +3 -1:postag NN | ||
| 41 | +4 +1:lemma _ | ||
| 42 | +5 +1:postag CD | ||
| 43 | +6 hUpper True | ||
| 44 | +7 hLower True | ||
| 45 | +8 hGreek False | ||
| 46 | +9 symb True | ||
| 47 | +10 lemma[:1] d | ||
| 48 | +11 lemma[:2] de | ||
| 49 | +12 word delta-arcA | ||
| 50 | +13 isUpper False | ||
| 51 | +14 isLower False | ||
| 52 | +15 isGreek False | ||
| 53 | +16 isNumber False | ||
| 54 | +17 -1:word _ | ||
| 55 | +18 +1:word _ | ||
| 56 | +19 -2:lemma affyexp | ||
| 57 | +20 -2:postag JJ | ||
| 58 | +21 +2:lemma glucose | ||
| 59 | +22 +2:postag NN | ||
| 60 | +Fitting 10 folds for each of 20 candidates, totalling 200 fits | ||
| 61 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 62 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.855584 - 1.4s | ||
| 63 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 64 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.839443 - 1.6s | ||
| 65 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 66 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.744355 - 1.9s | ||
| 67 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 68 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.837423 - 1.7s | ||
| 69 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 70 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.786374 - 1.9s | ||
| 71 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 72 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.894214 - 1.4s | ||
| 73 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 74 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.927296 - 1.6s | ||
| 75 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 76 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.769561 - 1.6s | ||
| 77 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 78 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.820276 - 1.8s | ||
| 79 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 80 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.852241 - 1.8s | ||
| 81 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 82 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.701018 - 1.5s | ||
| 83 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 84 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.823313 - 1.8s | ||
| 85 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 86 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.810806 - 1.7s | ||
| 87 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 88 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.862528 - 1.8s | ||
| 89 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 90 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.917821 - 1.7s | ||
| 91 | +[CV] c1=0.16796773996321945, c2=0.051466183184993 .................... | ||
| 92 | +[CV] c1=0.16796773996321945, c2=0.051466183184993, score=0.927296 - 1.4s | ||
| 93 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285 ................. | ||
| 94 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285, score=0.871337 - 1.6s | ||
| 95 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 96 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.928279 - 1.8s | ||
| 97 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 98 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.905285 - 1.8s | ||
| 99 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 100 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.877672 - 1.7s | ||
| 101 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 102 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.947560 - 1.5s | ||
| 103 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 104 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.827435 - 1.7s | ||
| 105 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 106 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.934961 - 1.8s | ||
| 107 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
| 108 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254, score=0.871999 - 1.7s | ||
| 109 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 110 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.877726 - 1.6s | ||
| 111 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 112 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.832180 - 1.6s | ||
| 113 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 114 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.905285 - 1.6s | ||
| 115 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 116 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.908266 - 1.7s | ||
| 117 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 118 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.712673 - 1.9s | ||
| 119 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 120 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.818750 - 1.8s | ||
| 121 | +[CV] c1=0.16796773996321945, c2=0.051466183184993 .................... | ||
| 122 | +[CV] c1=0.16796773996321945, c2=0.051466183184993, score=0.844088 - 1.3s | ||
| 123 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 124 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.876526 - 1.8s | ||
| 125 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 126 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.786169 - 1.6s | ||
| 127 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 128 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.917821 - 1.6s | ||
| 129 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 130 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.677786 - 1.9s | ||
| 131 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 132 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.854858 - 1.5s | ||
| 133 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285 ................. | ||
| 134 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285, score=0.827337 - 1.7s | ||
| 135 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787 ................. | ||
| 136 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787, score=0.854189 - 1.8s | ||
| 137 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
| 138 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254, score=0.797575 - 1.8s | ||
| 139 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 140 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.936486 - 1.7s | ||
| 141 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 142 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.882807 - 1.2s | ||
| 143 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 144 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.827690 - 2.0s | ||
| 145 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 146 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.601194 - 1.8s | ||
| 147 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 148 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.813790 - 2.0s | ||
| 149 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 150 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.932900 - 1.9s | ||
| 151 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 152 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.867297 - 1.5s | ||
| 153 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 154 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.945654 - 2.0s | ||
| 155 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787 ................. | ||
| 156 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787, score=0.848253 - 1.6s | ||
| 157 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 158 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.927509 - 1.9s | ||
| 159 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
| 160 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575, score=0.609476 - 1.7s | ||
| 161 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 162 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.945871 - 1.4s | ||
| 163 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 164 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.940537 - 1.7s | ||
| 165 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 166 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.767841 - 1.7s | ||
| 167 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 168 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.824101 - 1.9s | ||
| 169 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
| 170 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575, score=0.777170 - 1.7s | ||
| 171 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944 ................ | ||
| 172 | +[CV] c1=0.014622839747769914, c2=0.061827531030816944, score=0.927296 - 1.3s | ||
| 173 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083 ................... | ||
| 174 | +[CV] c1=0.2546256913180655, c2=0.08567888835212083, score=0.701018 - 1.8s | ||
| 175 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799 .................. | ||
| 176 | +[CV] c1=1.320423767018736, c2=0.0006342386585221799, score=0.818750 - 1.9s | ||
| 177 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126 .................. | ||
| 178 | +[CV] c1=0.3895794958853977, c2=0.008826457669620126, score=0.950725 - 2.0s | ||
| 179 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096 ................... | ||
| 180 | +[CV] c1=0.6190712080838937, c2=0.07176205729861096, score=0.824101 - 1.9s | ||
| 181 | +[CV] c1=0.190929240598343, c2=0.04355186228965651 .................... | ||
| 182 | +[CV] c1=0.190929240598343, c2=0.04355186228965651, score=0.844088 - 1.6s | ||
| 183 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285 ................. | ||
| 184 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285, score=0.874253 - 1.6s | ||
| 185 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787 ................. | ||
| 186 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787, score=0.927296 - 1.6s | ||
| 187 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
| 188 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254, score=0.686282 - 1.8s | ||
| 189 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
| 190 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575, score=0.818750 - 1.8s | ||
| 191 | +[CV] c1=0.190929240598343, c2=0.04355186228965651 .................... | ||
| 192 | +[CV] c1=0.190929240598343, c2=0.04355186228965651, score=0.849406 - 1.8s | ||
| 193 | +[CV] c1=0.022485418318991247, c2=0.07226838517970073 ................. | ||
| 194 | +[CV] c1=0.022485418318991247, c2=0.07226838517970073, score=0.701018 - 1.8s | ||
| 195 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272 .................. | ||
| 196 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272, score=0.812996 - 1.7s | ||
| 197 | +[CV] c1=0.5174874167807753, c2=0.020703126745445985 .................. | ||
| 198 | +[CV] c1=0.5174874167807753, c2=0.020703126745445985, score=0.841763 - 1.5s | ||
| 199 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
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| 201 | +[CV] c1=0.16796773996321945, c2=0.051466183184993 .................... | ||
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| 203 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285 ................. | ||
| 204 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285, score=0.927296 - 1.6s | ||
| 205 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787 ................. | ||
| 206 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787, score=0.729474 - 1.8s | ||
| 207 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
| 208 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254, score=0.917821 - 1.6s | ||
| 209 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
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| 211 | +[CV] c1=0.16796773996321945, c2=0.051466183184993 .................... | ||
| 212 | +[CV] c1=0.16796773996321945, c2=0.051466183184993, score=0.898170 - 1.7s | ||
| 213 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285 ................. | ||
| 214 | +[CV] c1=0.00632707477587882, c2=0.032688081217957285, score=0.947560 - 1.7s | ||
| 215 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787 ................. | ||
| 216 | +[CV] c1=0.12475431096451621, c2=0.013861677898849787, score=0.898170 - 1.7s | ||
| 217 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
| 218 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254, score=0.946646 - 1.8s | ||
| 219 | +[CV] c1=1.1730395683067192, c2=0.04136085455259575 ................... | ||
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| 227 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
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| 237 | +[CV] c1=0.6186211042682789, c2=0.021841056417535254 .................. | ||
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| 259 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 277 | +[CV] c1=0.5174874167807753, c2=0.020703126745445985 .................. | ||
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| 279 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 285 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272 .................. | ||
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| 311 | +[CV] c1=0.16796773996321945, c2=0.051466183184993 .................... | ||
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| 319 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 329 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 333 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
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| 337 | +[CV] c1=0.5174874167807753, c2=0.020703126745445985 .................. | ||
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| 339 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 359 | +[CV] c1=0.35540949764912066, c2=0.05344196426839372 .................. | ||
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| 361 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359 ................... | ||
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| 363 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
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| 365 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
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| 367 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
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| 373 | +[CV] c1=0.022485418318991247, c2=0.07226838517970073 ................. | ||
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| 375 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272 .................. | ||
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| 377 | +[CV] c1=0.5174874167807753, c2=0.020703126745445985 .................. | ||
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| 379 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
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| 381 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359 ................... | ||
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| 383 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
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| 385 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
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| 387 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
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| 389 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
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| 393 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
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| 402 | +[CV] c1=0.190929240598343, c2=0.04355186228965651, score=0.839383 - 1.7s | ||
| 403 | +[CV] c1=0.022485418318991247, c2=0.07226838517970073 ................. | ||
| 404 | +[CV] c1=0.022485418318991247, c2=0.07226838517970073, score=0.886214 - 1.7s | ||
| 405 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272 .................. | ||
| 406 | +[CV] c1=1.4962368934644148, c2=0.005609305438174272, score=0.907688 - 1.9s | ||
| 407 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
| 408 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171, score=0.902802 - 1.8s | ||
| 409 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
| 410 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408, score=0.677786 - 1.5s | ||
| 411 | +[CV] c1=0.190929240598343, c2=0.04355186228965651 .................... | ||
| 412 | +[CV] c1=0.190929240598343, c2=0.04355186228965651, score=0.813790 - 1.9s | ||
| 413 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
| 414 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545, score=0.865505 - 1.8s | ||
| 415 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
| 416 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204, score=0.609476 - 1.8s | ||
| 417 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
| 418 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171, score=0.813790 - 1.8s | ||
| 419 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
| 420 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408, score=0.946646 - 1.4s | ||
| 421 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359 ................... | ||
| 422 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359, score=0.847957 - 1.8s | ||
| 423 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
| 424 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545, score=0.824101 - 1.7s | ||
| 425 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
| 426 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204, score=0.931245 - 1.7s | ||
| 427 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
| 428 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171, score=0.927509 - 1.7s | ||
| 429 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
| 430 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408, score=0.824101 - 1.3s | ||
| 431 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359 ................... | ||
| 432 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359, score=0.844455 - 1.9s | ||
| 433 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
| 434 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545, score=0.818750 - 1.8s | ||
| 435 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
| 436 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204, score=0.818750 - 1.8s | ||
| 437 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
| 438 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171, score=0.862528 - 1.7s | ||
| 439 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
| 440 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408, score=0.882795 - 1.4s | ||
| 441 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359 ................... | ||
| 442 | +[CV] c1=0.1736092848065649, c2=0.02070619498632359, score=0.711517 - 1.8s | ||
| 443 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545 ................... | ||
| 444 | +[CV] c1=0.3890080123705456, c2=0.06863542905418545, score=0.694284 - 1.9s | ||
| 445 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204 .................. | ||
| 446 | +[CV] c1=0.9907276867534006, c2=0.015068999673777204, score=0.908266 - 1.6s | ||
| 447 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171 ................. | ||
| 448 | +[CV] c1=0.37993592904226775, c2=0.001287546330642171, score=0.696477 - 1.8s | ||
| 449 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408 ................... | ||
| 450 | +[CV] c1=0.5132989845379167, c2=0.04018212909012408, score=0.917821 - 1.5s | ||
| 451 | +Training done in: 11.427793s | ||
| 452 | + Saving training model... | ||
| 453 | + Saving training model done in: 0.013545s | ||
| 454 | +********************************* | ||
| 455 | +Prediction done in: 0.047166s |
CRF/reports/report_Run_1_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.17555398242003323, 'c2': 0.0008367558417380293} | ||
| 5 | +best CV score:0.8636034196474707 | ||
| 6 | +model size: 0.06M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7624930609829998 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.690 0.816 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.543 0.362 0.435 69 | ||
| 20 | + Anti 0.786 1.000 0.880 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.873 0.812 0.841 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.627 0.791 0.700 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.782 0.761 0.762 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 6.236783 | ||
| 32 | +Agit -> Agit 5.977368 | ||
| 33 | +Supp -> Supp 5.723953 | ||
| 34 | +Med -> Med 5.445232 | ||
| 35 | +Anti -> Anti 5.324268 | ||
| 36 | +OD -> OD 5.311513 | ||
| 37 | +Phase -> Phase 4.992339 | ||
| 38 | +O -> O 4.981091 | ||
| 39 | +Gtype -> Gtype 4.717730 | ||
| 40 | +Gversion -> Gversion 4.330989 | ||
| 41 | +Air -> Air 4.201627 | ||
| 42 | +Technique -> Technique 3.925712 | ||
| 43 | +pH -> pH 2.615370 | ||
| 44 | +O -> Supp 1.837983 | ||
| 45 | +Substrain -> Gtype 1.799206 | ||
| 46 | +O -> Technique 1.591877 | ||
| 47 | +Gtype -> Supp 1.476534 | ||
| 48 | +O -> Gtype 1.337075 | ||
| 49 | +Air -> O 1.306525 | ||
| 50 | +O -> Temp 0.991053 | ||
| 51 | +Supp -> O 0.824285 | ||
| 52 | +Temp -> O 0.739357 | ||
| 53 | +O -> Phase 0.680154 | ||
| 54 | +Gtype -> pH 0.472477 | ||
| 55 | +Med -> O 0.436738 | ||
| 56 | +Gtype -> Air 0.397033 | ||
| 57 | +O -> Anti 0.333293 | ||
| 58 | +O -> Gversion 0.293983 | ||
| 59 | +Phase -> O 0.274110 | ||
| 60 | +O -> Med 0.270711 | ||
| 61 | +O -> pH 0.265830 | ||
| 62 | +Technique -> Air 0.239225 | ||
| 63 | +O -> OD 0.208609 | ||
| 64 | +OD -> O 0.168573 | ||
| 65 | +Anti -> O 0.047017 | ||
| 66 | +Strain -> O 0.043724 | ||
| 67 | +Technique -> Gtype -0.000116 | ||
| 68 | +Gtype -> Anti -0.013188 | ||
| 69 | +Technique -> O -0.023355 | ||
| 70 | +Supp -> Med -0.155280 | ||
| 71 | +Gtype -> Med -0.630390 | ||
| 72 | +Gtype -> O -0.667165 | ||
| 73 | +O -> Air -0.778473 | ||
| 74 | +Phase -> OD -1.117260 | ||
| 75 | +Med -> Supp -1.179521 | ||
| 76 | +Substrain -> O -1.530930 | ||
| 77 | + | ||
| 78 | + | ||
| 79 | +Top unlikely transitions: | ||
| 80 | +Temp -> Temp 6.236783 | ||
| 81 | +Agit -> Agit 5.977368 | ||
| 82 | +Supp -> Supp 5.723953 | ||
| 83 | +Med -> Med 5.445232 | ||
| 84 | +Anti -> Anti 5.324268 | ||
| 85 | +OD -> OD 5.311513 | ||
| 86 | +Phase -> Phase 4.992339 | ||
| 87 | +O -> O 4.981091 | ||
| 88 | +Gtype -> Gtype 4.717730 | ||
| 89 | +Gversion -> Gversion 4.330989 | ||
| 90 | +Air -> Air 4.201627 | ||
| 91 | +Technique -> Technique 3.925712 | ||
| 92 | +pH -> pH 2.615370 | ||
| 93 | +O -> Supp 1.837983 | ||
| 94 | +Substrain -> Gtype 1.799206 | ||
| 95 | +O -> Technique 1.591877 | ||
| 96 | +Gtype -> Supp 1.476534 | ||
| 97 | +O -> Gtype 1.337075 | ||
| 98 | +Air -> O 1.306525 | ||
| 99 | +O -> Temp 0.991053 | ||
| 100 | +Supp -> O 0.824285 | ||
| 101 | +Temp -> O 0.739357 | ||
| 102 | +O -> Phase 0.680154 | ||
| 103 | +Gtype -> pH 0.472477 | ||
| 104 | +Med -> O 0.436738 | ||
| 105 | +Gtype -> Air 0.397033 | ||
| 106 | +O -> Anti 0.333293 | ||
| 107 | +O -> Gversion 0.293983 | ||
| 108 | +Phase -> O 0.274110 | ||
| 109 | +O -> Med 0.270711 | ||
| 110 | +O -> pH 0.265830 | ||
| 111 | +Technique -> Air 0.239225 | ||
| 112 | +O -> OD 0.208609 | ||
| 113 | +OD -> O 0.168573 | ||
| 114 | +Anti -> O 0.047017 | ||
| 115 | +Strain -> O 0.043724 | ||
| 116 | +Technique -> Gtype -0.000116 | ||
| 117 | +Gtype -> Anti -0.013188 | ||
| 118 | +Technique -> O -0.023355 | ||
| 119 | +Supp -> Med -0.155280 | ||
| 120 | +Gtype -> Med -0.630390 | ||
| 121 | +Gtype -> O -0.667165 | ||
| 122 | +O -> Air -0.778473 | ||
| 123 | +Phase -> OD -1.117260 | ||
| 124 | +Med -> Supp -1.179521 | ||
| 125 | +Substrain -> O -1.530930 | ||
| 126 | + | ||
| 127 | + | ||
| 128 | +Top positive: | ||
| 129 | +10.045367 Supp b'lemma:Iron' | ||
| 130 | +9.100880 O b'lemma:_' | ||
| 131 | +8.242002 Strain b'+1:lemma:substr' | ||
| 132 | +8.132268 O b'lemma:Custom' | ||
| 133 | +7.734397 Air b'lemma:anaerobic' | ||
| 134 | +7.632513 Med b'lemma:MOPS' | ||
| 135 | +7.625936 Technique b'lemma:ChIP-exo' | ||
| 136 | +7.390329 O b'lemma:-' | ||
| 137 | +7.321441 Phase b'lemma:exponential' | ||
| 138 | +7.321441 Phase b'lemma:stationary' | ||
| 139 | +7.253404 O b'lemma:2' | ||
| 140 | +7.222756 Supp b'lemma:pq' | ||
| 141 | +7.207380 Air b'-1:lemma:ChIP-Seq' | ||
| 142 | +7.155349 Air b'lemma:aerobic' | ||
| 143 | +6.813539 Gtype b'lemma:wt' | ||
| 144 | +6.702581 Technique b'lemma:chipseq' | ||
| 145 | +6.645365 O b'lemma:rpob' | ||
| 146 | +6.639496 Phase b'lemma:mid-log' | ||
| 147 | +6.639111 Gtype b'lemma:type' | ||
| 148 | +6.622009 Air b'lemma:Aerobic' | ||
| 149 | +6.527859 O b'lemma:3' | ||
| 150 | +6.516390 Gtype b'lemma:\xce\xb4cra' | ||
| 151 | +6.499705 O b'lemma:1' | ||
| 152 | +6.263452 O b'-1:lemma:tag' | ||
| 153 | +6.173201 O b'lemma:b' | ||
| 154 | +6.155179 O b'-1:lemma:ChIP-exo' | ||
| 155 | +6.024948 Gversion b'lemma:asm584v2' | ||
| 156 | +6.012376 Gtype b'lemma:wild-type' | ||
| 157 | +5.936435 Supp b'+1:lemma:\xc2\xb5m' | ||
| 158 | +5.737282 O b'lemma:Cra' | ||
| 159 | +5.711321 O b'lemma:a' | ||
| 160 | +5.696390 Gversion b'lemma:nc' | ||
| 161 | +5.639739 Gtype b'lemma:flag-tag' | ||
| 162 | +5.639739 Gtype b'-1:lemma:c-terminal' | ||
| 163 | +5.628162 O b'lemma:rep1' | ||
| 164 | +5.614254 O b'lemma:rep3' | ||
| 165 | +5.494137 Gtype b'+1:lemma:type' | ||
| 166 | +5.430135 Supp b'lemma:nacl' | ||
| 167 | +5.262704 Technique b'lemma:ChIP-Seq' | ||
| 168 | +4.943606 Supp b'-1:lemma:Cra' | ||
| 169 | +4.865297 O b'lemma:\xcf\x8332' | ||
| 170 | +4.856195 Gtype b'lemma:\xce\xb4fur' | ||
| 171 | +4.812215 Gtype b'lemma:arca8myc' | ||
| 172 | +4.661623 Supp b'lemma:rifampicin' | ||
| 173 | +4.591681 Technique b'lemma:rna-seq' | ||
| 174 | +4.567002 O b'+1:lemma:pq' | ||
| 175 | +4.496950 O b'-1:lemma:type' | ||
| 176 | +4.491357 OD b'lemma:od450' | ||
| 177 | +4.482197 O b'postag:IN' | ||
| 178 | +4.479634 Supp b'lemma:acetate' | ||
| 179 | +4.472507 Med b'-1:lemma:ml' | ||
| 180 | +4.471210 Gtype b'lemma:dfnr' | ||
| 181 | +4.467873 Supp b'lemma:nitrate' | ||
| 182 | +4.378040 Technique b'lemma:rnaseq' | ||
| 183 | +4.342911 O b'lemma:ompr' | ||
| 184 | +4.332518 Supp b'-1:lemma:+' | ||
| 185 | +4.328989 Supp b'lemma:glucose' | ||
| 186 | +4.308726 O b'lemma:chip' | ||
| 187 | +4.302072 Gtype b'lemma:fnr8myc' | ||
| 188 | +4.273847 Gtype b'lemma:\xce\xb4soxr' | ||
| 189 | +4.190264 Gtype b'lemma:pk4854' | ||
| 190 | +4.098705 Anti b'lemma:none' | ||
| 191 | +4.079404 Supp b'lemma:nh4cl' | ||
| 192 | +3.957229 Anti b'lemma:\xcf\x8332' | ||
| 193 | +3.956003 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 194 | +3.953278 Agit b'+1:lemma:rpm' | ||
| 195 | +3.941726 Gtype b'lemma:\xe2\x88\x86' | ||
| 196 | +3.907768 Technique b'lemma:chip-seq' | ||
| 197 | +3.905761 Agit b'lemma:rpm' | ||
| 198 | +3.904057 Supp b'-1:lemma:with' | ||
| 199 | +3.875117 O b'lemma:with' | ||
| 200 | +3.849561 Gtype b'lemma:nsrr' | ||
| 201 | +3.837199 Strain b'lemma:k-12' | ||
| 202 | +3.821133 O b'-1:lemma:0.3' | ||
| 203 | +3.819067 Substrain b'lemma:mg1655' | ||
| 204 | +3.801355 Air b'postag:RB' | ||
| 205 | +3.742394 Gtype b'lemma:delta-fnr' | ||
| 206 | +3.723431 O b'lemma:.' | ||
| 207 | +3.723431 O b'postag:.' | ||
| 208 | +3.712638 Gtype b'+1:lemma:ph5' | ||
| 209 | +3.706468 Technique b'+1:lemma:chip-exo' | ||
| 210 | +3.704888 O b'-1:lemma:lb' | ||
| 211 | +3.700597 O b'postag:VBN' | ||
| 212 | +3.687731 Med b'lemma:lb' | ||
| 213 | +3.613975 O b'lemma:rep2' | ||
| 214 | +3.608532 Med b'+1:lemma:0.4' | ||
| 215 | +3.574989 Temp b'+1:lemma:in' | ||
| 216 | +3.569955 Gtype b'lemma:delta-arca' | ||
| 217 | +3.550905 O b'-1:lemma:Aerobic' | ||
| 218 | +3.528303 Anti b'lemma:seqa' | ||
| 219 | +3.503539 Supp b'lemma:Fe' | ||
| 220 | +3.492004 Supp b'lemma:no3' | ||
| 221 | +3.441556 O b'postag::' | ||
| 222 | +3.422006 O b'lemma:s' | ||
| 223 | +3.421977 Air b'-1:lemma:-' | ||
| 224 | +3.409494 Anti b'+1:lemma:antibody' | ||
| 225 | +3.369142 Supp b'lemma:Leu' | ||
| 226 | +3.366238 Gversion b'lemma:chip-seq' | ||
| 227 | +3.352237 pH b'lemma:5.5' | ||
| 228 | +3.322800 Supp b'lemma:dpd' | ||
| 229 | +3.313361 O b'postag:CC' | ||
| 230 | +3.300844 Air b'lemma:anaerobically' | ||
| 231 | +3.294952 O b'-1:lemma:glucose' | ||
| 232 | +3.283475 Gtype b'lemma:\xce\xb4ompr' | ||
| 233 | +3.272195 Gversion b'lemma:000913' | ||
| 234 | +3.262789 Air b'lemma:aerobically' | ||
| 235 | +3.220393 Temp b'-1:lemma:43' | ||
| 236 | +3.217440 Temp b'lemma:43' | ||
| 237 | +3.214588 O b'+1:lemma:arca-8myc' | ||
| 238 | +3.198442 Gtype b'-1:lemma:rpob' | ||
| 239 | +3.188606 O b'+1:lemma:250' | ||
| 240 | +3.187173 O b'lemma:harbor' | ||
| 241 | +3.185320 Gversion b'lemma:u00096' | ||
| 242 | +3.185320 Gversion b'+1:lemma:.2' | ||
| 243 | +3.175362 Substrain b'+1:lemma:phtpg' | ||
| 244 | +3.172542 Gtype b'lemma:\xce\xb4oxyr' | ||
| 245 | +3.170170 Supp b'lemma:Adenine' | ||
| 246 | +3.164012 Supp b'lemma:arginine' | ||
| 247 | +3.136227 O b'postag:VBG' | ||
| 248 | +3.104172 Med b'+1:lemma:2.0' | ||
| 249 | +3.096505 Temp b'-1:lemma:\xcf\x8332' | ||
| 250 | +3.074944 Technique b'-1:lemma:IP' | ||
| 251 | +3.067448 O b'-1:lemma:0.3-0.35' | ||
| 252 | +3.065444 Med b'lemma:L' | ||
| 253 | +3.065444 Med b'+1:lemma:broth' | ||
| 254 | +3.060118 O b'lemma:CEL' | ||
| 255 | +3.054281 O b'+1:lemma:coli' | ||
| 256 | +3.051410 O b'-1:lemma:\xc2\xb0c' | ||
| 257 | +3.034615 Temp b'-1:lemma:sample' | ||
| 258 | +3.029536 Air b'lemma:anaeroibc' | ||
| 259 | +3.023155 Substrain b'lemma:mg1655star' | ||
| 260 | +3.019933 Gtype b'+1:lemma:pq' | ||
| 261 | +2.995596 O b'+1:lemma:acetate' | ||
| 262 | +2.984619 Gversion b'-1:lemma:nc' | ||
| 263 | +2.925612 Vess b'lemma:flask' | ||
| 264 | +2.925612 Vess b'-1:lemma:warm' | ||
| 265 | +2.899963 O b'-1:lemma:into' | ||
| 266 | +2.891018 Technique b'-1:lemma:chip-exo' | ||
| 267 | +2.890525 O b'+1:lemma:od600' | ||
| 268 | +2.858430 Supp b'-1:lemma:vol' | ||
| 269 | +2.849587 Supp b'+1:lemma:1' | ||
| 270 | +2.828369 pH b'lemma:ph5' | ||
| 271 | +2.828369 pH b'+1:lemma:.5' | ||
| 272 | +2.824538 Technique b'+1:lemma:rna-seq' | ||
| 273 | +2.822954 O b'lemma:ml' | ||
| 274 | +2.817516 Med b'lemma:m63' | ||
| 275 | +2.799830 O b'+1:lemma:chip-seq' | ||
| 276 | +2.787598 Gtype b'-1:lemma:delta' | ||
| 277 | +2.779697 Supp b'lemma:fructose' | ||
| 278 | +2.767969 Anti b'lemma:anti-myc' | ||
| 279 | +2.763373 Med b'lemma:minimal' | ||
| 280 | +2.743566 Gversion b'lemma:.2' | ||
| 281 | +2.743566 Gversion b'-1:lemma:u00096' | ||
| 282 | +2.740028 O b'lemma:at' | ||
| 283 | +2.726573 O b'+1:lemma:mid-log' | ||
| 284 | +2.723830 Med b'lemma:media' | ||
| 285 | +2.690230 Gtype b'-1:lemma:ptac' | ||
| 286 | +2.654749 Phase b'-1:lemma:mid-log' | ||
| 287 | +2.599977 Temp b'-1:lemma:37' | ||
| 288 | +2.596352 Supp b'+1:lemma:mm' | ||
| 289 | +2.585123 O b'lemma:genotype/variation' | ||
| 290 | +2.571508 pH b'+1:lemma:5.5' | ||
| 291 | +2.562718 O b'+1:postag:RB' | ||
| 292 | +2.562005 Med b'lemma:broth' | ||
| 293 | +2.562005 Med b'-1:lemma:L' | ||
| 294 | +2.554222 O b'+1:postag:NNP' | ||
| 295 | +2.535600 Gtype b'+1:lemma:_' | ||
| 296 | +2.518199 pH b'+1:postag:CD' | ||
| 297 | +2.518124 Gtype b'+1:lemma:with' | ||
| 298 | +2.491187 Supp b'-1:lemma:sodium' | ||
| 299 | +2.469590 Gtype b'-1:postag:VBG' | ||
| 300 | +2.467682 O b'lemma::' | ||
| 301 | +2.457707 Gtype b'+1:lemma:flagtag' | ||
| 302 | +2.438605 Supp b'-1:lemma:\xc2\xb5m' | ||
| 303 | +2.431369 O b'lemma:delta' | ||
| 304 | +2.383985 O b'-1:lemma:rpm' | ||
| 305 | +2.377086 O b'lemma:condition' | ||
| 306 | +2.376152 Gtype b'-1:lemma:factor' | ||
| 307 | +2.371623 Med b'-1:lemma:fresh' | ||
| 308 | +2.370677 O b'lemma:agitation' | ||
| 309 | +2.284942 O b'-1:lemma:l1' | ||
| 310 | +2.275556 Supp b'lemma:2h' | ||
| 311 | +2.275556 Supp b'-1:lemma:additional' | ||
| 312 | +2.274947 Phase b'lemma:phase' | ||
| 313 | +2.266504 Gtype b'+1:postag::' | ||
| 314 | +2.261288 Supp b'+1:lemma:2' | ||
| 315 | +2.260087 O b'lemma:culture' | ||
| 316 | +2.253128 Temp b'lemma:\xc2\xb0c' | ||
| 317 | +2.230044 Gtype b'lemma:deltaseqa' | ||
| 318 | +2.230044 Gtype b'-1:lemma:old' | ||
| 319 | +2.227831 O b'+1:lemma:or' | ||
| 320 | +2.192592 O b'+1:lemma:sparging' | ||
| 321 | +2.165330 O b'lemma:chip-arca' | ||
| 322 | +2.117423 Gtype b'lemma:ptac' | ||
| 323 | +2.114952 Temp b'lemma:37' | ||
| 324 | +2.108020 Med b'-1:lemma:glucose' | ||
| 325 | +2.104393 Supp b'+1:lemma:_' | ||
| 326 | +2.087736 Med b'+1:lemma:g/l' | ||
| 327 | +2.077989 Vess b'+1:lemma:at' | ||
| 328 | +2.059857 Phase b'-1:lemma:until' | ||
| 329 | + | ||
| 330 | + | ||
| 331 | +Top negative: | ||
| 332 | +0.000742 Supp b'postag::' | ||
| 333 | +0.000442 Air b'-1:lemma:phase' | ||
| 334 | +0.000211 Supp b'lemma:,' | ||
| 335 | +0.000211 Supp b'postag:,' | ||
| 336 | +0.000137 O b'+1:postag:CD' | ||
| 337 | +0.000131 Supp b'lemma:;' | ||
| 338 | +0.000131 Supp b'-1:lemma:7.6' | ||
| 339 | +0.000123 Air b'lemma:-lrb-' | ||
| 340 | +0.000116 Air b'postag:-LRB-' | ||
| 341 | +0.000115 Temp b'postag:CD' | ||
| 342 | +0.000114 Air b'lemma:95' | ||
| 343 | +0.000098 O b'lemma:IP' | ||
| 344 | +0.000087 Supp b'+1:lemma:10' | ||
| 345 | +0.000082 Air b'+1:postag:CC' | ||
| 346 | +0.000081 O b'+1:lemma:phase' | ||
| 347 | +0.000081 Air b'+1:lemma:n2' | ||
| 348 | +0.000068 Air b'-1:lemma:and' | ||
| 349 | +0.000067 O b'lemma:dpd' | ||
| 350 | +0.000062 Temp b'-1:postag:IN' | ||
| 351 | +0.000059 Air b'+1:lemma:-rrb-' | ||
| 352 | +0.000058 Air b'+1:postag:-RRB-' | ||
| 353 | +0.000057 Air b'postag:CC' | ||
| 354 | +0.000036 Supp b'lemma:m' | ||
| 355 | +0.000028 Med b'+1:postag:VBG' | ||
| 356 | +0.000020 Gversion b'-1:postag::' | ||
| 357 | +0.000008 Air b'-1:lemma:-lrb-' | ||
| 358 | +0.000007 Air b'-1:postag:-LRB-' | ||
| 359 | +0.000001 O b'+1:lemma:anti-fur' | ||
| 360 | +-0.000004 O b'+1:lemma:contain' | ||
| 361 | +-0.000005 O b'+1:lemma:7.6' | ||
| 362 | +-0.000018 O b'-1:lemma:95' | ||
| 363 | +-0.000026 O b'-1:lemma:anaerobically' | ||
| 364 | +-0.000028 O b'lemma:m' | ||
| 365 | +-0.000035 O b'lemma:co2' | ||
| 366 | +-0.000041 Supp b'+1:postag:IN' | ||
| 367 | +-0.000044 O b'lemma:n2' | ||
| 368 | +-0.000052 Gtype b'-1:postag:NNP' | ||
| 369 | +-0.000060 O b'lemma:;' | ||
| 370 | +-0.000060 O b'-1:lemma:7.6' | ||
| 371 | +-0.000139 O b'+1:lemma:95' | ||
| 372 | +-0.000142 O b'lemma:phase' | ||
| 373 | +-0.000218 O b'lemma:7.6' | ||
| 374 | +-0.000218 O b'+1:lemma:;' | ||
| 375 | +-0.000325 O b'-1:lemma:rifampicin' | ||
| 376 | +-0.000388 Med b'postag:JJ' | ||
| 377 | +-0.000590 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 378 | +-0.000903 O b'lemma:fecl2' | ||
| 379 | +-0.001037 Med b'-1:postag:CD' | ||
| 380 | +-0.002018 OD b'postag:NN' | ||
| 381 | +-0.002219 O b'-1:postag:DT' | ||
| 382 | +-0.002619 Agit b'-1:postag:NN' | ||
| 383 | +-0.002670 Agit b'postag:NN' | ||
| 384 | +-0.002713 Supp b'-1:lemma:,' | ||
| 385 | +-0.002713 Supp b'-1:postag:,' | ||
| 386 | +-0.002864 O b'-1:lemma:rpob' | ||
| 387 | +-0.004052 Gtype b'+1:lemma:-rrb-' | ||
| 388 | +-0.005593 O b'lemma:%' | ||
| 389 | +-0.005800 Supp b'+1:lemma:of' | ||
| 390 | +-0.006031 O b'-1:postag:-RRB-' | ||
| 391 | +-0.006630 Supp b'lemma:and' | ||
| 392 | +-0.008960 O b'+1:lemma:5' | ||
| 393 | +-0.009041 Gtype b'-1:lemma:mg1655' | ||
| 394 | +-0.010663 O b'+1:lemma:-lrb-' | ||
| 395 | +-0.011765 O b'+1:lemma:for' | ||
| 396 | +-0.012164 Gtype b'+1:postag:CD' | ||
| 397 | +-0.013897 Supp b'-1:lemma:dpd' | ||
| 398 | +-0.017334 Gtype b'-1:postag:NN' | ||
| 399 | +-0.017694 Gtype b'postag:VBG' | ||
| 400 | +-0.017980 O b'lemma:dissolve' | ||
| 401 | +-0.019810 O b'+1:lemma:co2' | ||
| 402 | +-0.022198 Supp b'-1:lemma:10' | ||
| 403 | +-0.025394 Med b'-1:postag:NN' | ||
| 404 | +-0.025755 Air b'-1:postag:CC' | ||
| 405 | +-0.043211 Supp b'-1:lemma:.' | ||
| 406 | +-0.043211 Supp b'-1:postag:.' | ||
| 407 | +-0.051959 O b'-1:lemma:g/l' | ||
| 408 | +-0.055702 O b'-1:lemma:with' | ||
| 409 | +-0.063942 Supp b'lemma:mm' | ||
| 410 | +-0.068985 Technique b'postag:NN' | ||
| 411 | +-0.073087 Air b'postag:CD' | ||
| 412 | +-0.077219 O b'lemma:1m' | ||
| 413 | +-0.080485 O b'-1:lemma:~' | ||
| 414 | +-0.085050 O b'+1:lemma:-rrb-' | ||
| 415 | +-0.092426 Supp b'-1:lemma:;' | ||
| 416 | +-0.092628 Gtype b'-1:postag:CD' | ||
| 417 | +-0.096816 Gtype b'postag:CD' | ||
| 418 | +-0.119110 O b'lemma:aerobic' | ||
| 419 | +-0.126644 O b'-1:lemma:of' | ||
| 420 | +-0.131761 Supp b'-1:postag:NN' | ||
| 421 | +-0.134231 Phase b'-1:lemma:at' | ||
| 422 | +-0.136658 O b'+1:lemma:%' | ||
| 423 | +-0.141146 O b'-1:lemma:iptg' | ||
| 424 | +-0.144992 O b'+1:lemma:ph' | ||
| 425 | +-0.157744 Phase b'+1:postag:NN' | ||
| 426 | +-0.157765 Anti b'+1:postag:JJ' | ||
| 427 | +-0.163999 O b'lemma:wt' | ||
| 428 | +-0.189704 O b'+1:lemma:fnr' | ||
| 429 | +-0.198314 Gversion b'+1:postag:NN' | ||
| 430 | +-0.216819 Technique b'-1:lemma::' | ||
| 431 | +-0.221198 O b'-1:lemma:from' | ||
| 432 | +-0.226083 Med b'postag:CD' | ||
| 433 | +-0.230714 O b'-1:lemma:until' | ||
| 434 | +-0.237769 Supp b'postag:NN' | ||
| 435 | +-0.242723 O b'-1:lemma:m' | ||
| 436 | +-0.263854 O b'-1:lemma:1m' | ||
| 437 | +-0.266928 O b'+1:postag:-LRB-' | ||
| 438 | +-0.269887 O b'lemma:od600' | ||
| 439 | +-0.286157 Supp b'postag:CD' | ||
| 440 | +-0.303058 Supp b'lemma:10' | ||
| 441 | +-0.318379 O b'lemma:37' | ||
| 442 | +-0.338883 O b'lemma:medium' | ||
| 443 | +-0.349993 Supp b'postag:CC' | ||
| 444 | +-0.363924 Gtype b'+1:lemma:-lrb-' | ||
| 445 | +-0.367167 O b'+1:lemma:.' | ||
| 446 | +-0.367167 O b'+1:postag:.' | ||
| 447 | +-0.369526 O b'-1:postag:IN' | ||
| 448 | +-0.374776 O b'-1:lemma:-lrb-' | ||
| 449 | +-0.396666 O b'lemma:minimal' | ||
| 450 | +-0.401132 Supp b'+1:lemma:nacl' | ||
| 451 | +-0.401200 O b'lemma:20' | ||
| 452 | +-0.413658 O b'+1:lemma:+' | ||
| 453 | +-0.420906 O b'+1:lemma:supplement' | ||
| 454 | +-0.422140 O b'-1:lemma:37' | ||
| 455 | +-0.449399 O b'-1:lemma:final' | ||
| 456 | +-0.475371 Supp b'+1:lemma:rifampicin' | ||
| 457 | +-0.479924 O b'-1:postag:-LRB-' | ||
| 458 | +-0.482195 Med b'+1:postag:NN' | ||
| 459 | +-0.502676 Med b'-1:postag:IN' | ||
| 460 | +-0.510386 O b'lemma:aerobically' | ||
| 461 | +-0.534746 O b'lemma:ph' | ||
| 462 | +-0.537042 Supp b'+1:lemma:dpd' | ||
| 463 | +-0.553037 O b'lemma:\xe2\x88\x86' | ||
| 464 | +-0.562667 Supp b'+1:lemma:fructose' | ||
| 465 | +-0.579922 O b'+1:postag:-RRB-' | ||
| 466 | +-0.590146 Air b'-1:lemma:or' | ||
| 467 | +-0.593093 O b'lemma:mid-log' | ||
| 468 | +-0.607111 O b'-1:lemma:n2' | ||
| 469 | +-0.610949 Supp b'-1:lemma:-lrb-' | ||
| 470 | +-0.623891 O b'-1:lemma:cra' | ||
| 471 | +-0.632807 pH b'postag:NN' | ||
| 472 | +-0.636218 O b'lemma:nitrogen' | ||
| 473 | +-0.650697 Technique b'-1:postag::' | ||
| 474 | +-0.667765 Supp b'-1:postag:-LRB-' | ||
| 475 | +-0.674159 O b'+1:lemma:2.0' | ||
| 476 | +-0.694197 O b'-1:lemma:co2' | ||
| 477 | +-0.701703 O b'-1:lemma:ml' | ||
| 478 | +-0.713992 O b'-1:lemma:\xe2\x88\x86' | ||
| 479 | +-0.749394 O b'-1:lemma:mm' | ||
| 480 | +-0.789720 O b'lemma:2h' | ||
| 481 | +-0.789720 O b'-1:lemma:additional' | ||
| 482 | +-0.820603 O b'+1:lemma:until' | ||
| 483 | +-0.839385 O b'lemma:methanol' | ||
| 484 | +-0.843808 O b'lemma:anaerobically' | ||
| 485 | +-0.860222 O b'-1:lemma:delta' | ||
| 486 | +-0.871696 O b'+1:lemma:1m' | ||
| 487 | +-0.880227 O b'+1:postag:IN' | ||
| 488 | +-0.923850 Supp b'+1:postag:VBN' | ||
| 489 | +-0.934662 Supp b'+1:lemma:acetate' | ||
| 490 | +-0.987240 O b'+1:lemma:g/l' | ||
| 491 | +-0.987424 O b'-1:postag::' | ||
| 492 | +-1.031889 O b'lemma:media' | ||
| 493 | +-1.050292 O b'-1:lemma:dissolve' | ||
| 494 | +-1.050292 O b'+1:lemma:methanol' | ||
| 495 | +-1.063258 O b'+1:lemma:at' | ||
| 496 | +-1.121215 O b'-1:lemma:ph' | ||
| 497 | +-1.124241 Supp b'-1:postag:NNP' | ||
| 498 | +-1.124243 O b'-1:lemma:nsrr' | ||
| 499 | +-1.178115 Anti b'postag:NNP' | ||
| 500 | +-1.210563 O b'lemma:of' | ||
| 501 | +-1.231717 O b'+1:lemma:mm' | ||
| 502 | +-1.234806 Air b'postag:NN' | ||
| 503 | +-1.361331 Air b'+1:postag:JJ' | ||
| 504 | +-1.388315 O b'+1:postag:VBG' | ||
| 505 | +-1.395520 O b'postag:VBP' | ||
| 506 | +-1.437329 Temp b'postag:NN' | ||
| 507 | +-1.497705 O b'-1:lemma:30' | ||
| 508 | +-1.515627 Phase b'-1:postag:JJ' | ||
| 509 | +-1.587348 O b'-1:lemma:fresh' | ||
| 510 | +-1.648330 O b'-1:lemma:sample' | ||
| 511 | +-1.699219 Supp b'+1:lemma:-lrb-' | ||
| 512 | +-1.725672 O b'+1:lemma:1' | ||
| 513 | +-1.740394 O b'lemma:30' | ||
| 514 | +-1.747868 Supp b'+1:postag:-LRB-' | ||
| 515 | +-1.758948 O b'-1:lemma:IP' | ||
| 516 | +-1.840034 Supp b'+1:lemma:,' | ||
| 517 | +-1.840034 Supp b'+1:postag:,' | ||
| 518 | +-1.883643 Phase b'postag:JJ' | ||
| 519 | +-1.897236 O b'-1:lemma:2' | ||
| 520 | +-1.932081 OD b'+1:postag:NN' | ||
| 521 | +-1.999100 O b'lemma:rifampicin' | ||
| 522 | +-2.008414 O b'+1:lemma:in' | ||
| 523 | +-2.134731 O b'-1:lemma:1' | ||
| 524 | +-2.149272 Supp b'postag:JJ' | ||
| 525 | +-2.244551 O b'lemma:0.3' | ||
| 526 | +-2.273539 O b'+1:lemma:2' | ||
| 527 | +-2.385609 O b'-1:postag:VBG' | ||
| 528 | +-2.393117 O b'-1:lemma:vol' | ||
| 529 | +-2.614797 Temp b'+1:postag:IN' | ||
| 530 | +-4.634459 O b'-1:lemma:_' | ||
| 531 | +-4.978327 O b'-1:lemma::' | ||
| 532 | + |
CRF/reports/report_Run_1_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.14843910146742284, 'c2': 0.03226312504680252} | ||
| 5 | +best CV score:0.8612823170568367 | ||
| 6 | +model size: 0.07M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7860849079440478 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.690 0.816 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.543 0.362 0.435 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.878 0.847 0.862 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.731 0.791 0.760 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.819 0.765 0.786 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 5.530931 | ||
| 32 | +Agit -> Agit 5.252892 | ||
| 33 | +Med -> Med 5.060058 | ||
| 34 | +OD -> OD 5.010656 | ||
| 35 | +Supp -> Supp 4.868977 | ||
| 36 | +Anti -> Anti 4.778087 | ||
| 37 | +Phase -> Phase 4.545953 | ||
| 38 | +Gtype -> Gtype 4.505488 | ||
| 39 | +O -> O 4.397808 | ||
| 40 | +Air -> Air 4.207182 | ||
| 41 | +Gversion -> Gversion 4.184434 | ||
| 42 | +Technique -> Technique 3.303412 | ||
| 43 | +pH -> pH 2.824139 | ||
| 44 | +Gtype -> Supp 1.667731 | ||
| 45 | +O -> Supp 1.652196 | ||
| 46 | +Substrain -> Gtype 1.583082 | ||
| 47 | +Air -> O 1.417656 | ||
| 48 | +O -> Technique 1.331982 | ||
| 49 | +O -> Gtype 1.241437 | ||
| 50 | +Gtype -> Air 0.970767 | ||
| 51 | +O -> Temp 0.956558 | ||
| 52 | +Technique -> Air 0.825884 | ||
| 53 | +Supp -> O 0.782386 | ||
| 54 | +Gtype -> pH 0.768653 | ||
| 55 | +Med -> O 0.684439 | ||
| 56 | +Temp -> O 0.624874 | ||
| 57 | +O -> Anti 0.553272 | ||
| 58 | +O -> Phase 0.459901 | ||
| 59 | +O -> Gversion 0.367975 | ||
| 60 | +Strain -> O 0.312627 | ||
| 61 | +O -> Med 0.232469 | ||
| 62 | +Phase -> O 0.226758 | ||
| 63 | +OD -> O 0.226193 | ||
| 64 | +O -> OD 0.174193 | ||
| 65 | +O -> pH 0.160341 | ||
| 66 | +Anti -> O 0.049474 | ||
| 67 | +Phase -> Supp -0.001306 | ||
| 68 | +Anti -> Gtype -0.002165 | ||
| 69 | +Anti -> Med -0.020656 | ||
| 70 | +Temp -> Med -0.024123 | ||
| 71 | +Supp -> Technique -0.033921 | ||
| 72 | +Phase -> Technique -0.039561 | ||
| 73 | +Supp -> Gtype -0.050932 | ||
| 74 | +Gtype -> Technique -0.103217 | ||
| 75 | +Gtype -> O -0.123668 | ||
| 76 | +Supp -> Air -0.177566 | ||
| 77 | +Gtype -> Gversion -0.243460 | ||
| 78 | +Air -> Phase -0.247860 | ||
| 79 | +Technique -> OD -0.306784 | ||
| 80 | +Gtype -> Anti -0.344939 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Air -> Air 4.207182 | ||
| 85 | +Gversion -> Gversion 4.184434 | ||
| 86 | +Technique -> Technique 3.303412 | ||
| 87 | +pH -> pH 2.824139 | ||
| 88 | +Gtype -> Supp 1.667731 | ||
| 89 | +O -> Supp 1.652196 | ||
| 90 | +Substrain -> Gtype 1.583082 | ||
| 91 | +Air -> O 1.417656 | ||
| 92 | +O -> Technique 1.331982 | ||
| 93 | +O -> Gtype 1.241437 | ||
| 94 | +Gtype -> Air 0.970767 | ||
| 95 | +O -> Temp 0.956558 | ||
| 96 | +Technique -> Air 0.825884 | ||
| 97 | +Supp -> O 0.782386 | ||
| 98 | +Gtype -> pH 0.768653 | ||
| 99 | +Med -> O 0.684439 | ||
| 100 | +Temp -> O 0.624874 | ||
| 101 | +O -> Anti 0.553272 | ||
| 102 | +O -> Phase 0.459901 | ||
| 103 | +O -> Gversion 0.367975 | ||
| 104 | +Strain -> O 0.312627 | ||
| 105 | +O -> Med 0.232469 | ||
| 106 | +Phase -> O 0.226758 | ||
| 107 | +OD -> O 0.226193 | ||
| 108 | +O -> OD 0.174193 | ||
| 109 | +O -> pH 0.160341 | ||
| 110 | +Anti -> O 0.049474 | ||
| 111 | +Phase -> Supp -0.001306 | ||
| 112 | +Anti -> Gtype -0.002165 | ||
| 113 | +Anti -> Med -0.020656 | ||
| 114 | +Temp -> Med -0.024123 | ||
| 115 | +Supp -> Technique -0.033921 | ||
| 116 | +Phase -> Technique -0.039561 | ||
| 117 | +Supp -> Gtype -0.050932 | ||
| 118 | +Gtype -> Technique -0.103217 | ||
| 119 | +Gtype -> O -0.123668 | ||
| 120 | +Supp -> Air -0.177566 | ||
| 121 | +Gtype -> Gversion -0.243460 | ||
| 122 | +Air -> Phase -0.247860 | ||
| 123 | +Technique -> OD -0.306784 | ||
| 124 | +Gtype -> Anti -0.344939 | ||
| 125 | +O -> Air -0.501788 | ||
| 126 | +Supp -> Med -0.605352 | ||
| 127 | +OD -> Air -0.613240 | ||
| 128 | +Technique -> pH -0.690682 | ||
| 129 | +Gtype -> Med -0.722078 | ||
| 130 | +Phase -> OD -0.801917 | ||
| 131 | +Technique -> Gtype -1.071131 | ||
| 132 | +Substrain -> O -1.244706 | ||
| 133 | +Med -> Supp -1.620782 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +7.616993 O b'lemma:_' | ||
| 138 | +6.105092 Supp b'lemma:Iron' | ||
| 139 | +6.103829 Air b'lemma:anaerobic' | ||
| 140 | +5.778936 O b'lemma:2' | ||
| 141 | +5.395636 Technique b'lemma:ChIP-exo' | ||
| 142 | +5.204401 O b'lemma:1' | ||
| 143 | +5.144386 Supp b'lemma:pq' | ||
| 144 | +5.103835 Phase b'lemma:mid-log' | ||
| 145 | +5.083193 Air b'lemma:Aerobic' | ||
| 146 | +5.031561 Technique b'lemma:chipseq' | ||
| 147 | +5.005363 Gtype b'lemma:wt' | ||
| 148 | +4.790043 O b'postag:IN' | ||
| 149 | +4.685173 O b'lemma:3' | ||
| 150 | +4.622144 Gtype b'lemma:\xce\xb4cra' | ||
| 151 | +4.524605 Air b'lemma:aerobic' | ||
| 152 | +4.365549 O b'lemma:rpob' | ||
| 153 | +4.310154 O b'lemma:-' | ||
| 154 | +4.272698 Gtype b'lemma:wild-type' | ||
| 155 | +4.264401 Phase b'lemma:exponential' | ||
| 156 | +4.264401 Phase b'lemma:stationary' | ||
| 157 | +4.248629 Gversion b'lemma:asm584v2' | ||
| 158 | +4.178525 Supp b'+1:lemma:\xc2\xb5m' | ||
| 159 | +4.162767 Supp b'lemma:glucose' | ||
| 160 | +4.086811 O b'lemma:b' | ||
| 161 | +4.074447 O b'lemma:Cra' | ||
| 162 | +4.061821 Gtype b'lemma:flag-tag' | ||
| 163 | +4.061821 Gtype b'-1:lemma:c-terminal' | ||
| 164 | +4.047125 O b'-1:lemma:tag' | ||
| 165 | +4.029539 Med b'lemma:MOPS' | ||
| 166 | +4.012096 Air b'-1:lemma:ChIP-Seq' | ||
| 167 | +3.859049 Strain b'+1:lemma:substr' | ||
| 168 | +3.808960 Gtype b'lemma:type' | ||
| 169 | +3.796393 Gtype b'lemma:arca8myc' | ||
| 170 | +3.770798 Gtype b'+1:lemma:type' | ||
| 171 | +3.739682 Substrain b'lemma:mg1655' | ||
| 172 | +3.729115 O b'postag::' | ||
| 173 | +3.712923 Supp b'lemma:acetate' | ||
| 174 | +3.671833 O b'lemma:a' | ||
| 175 | +3.624682 O b'postag:CC' | ||
| 176 | +3.612738 Technique b'lemma:rna-seq' | ||
| 177 | +3.596048 Gtype b'lemma:\xe2\x88\x86' | ||
| 178 | +3.593479 O b'lemma:rep1' | ||
| 179 | +3.583965 Supp b'lemma:nh4cl' | ||
| 180 | +3.580142 O b'-1:lemma:ChIP-exo' | ||
| 181 | +3.553131 Supp b'lemma:nacl' | ||
| 182 | +3.491025 Strain b'lemma:k-12' | ||
| 183 | +3.486896 Gversion b'lemma:nc' | ||
| 184 | +3.433417 Med b'lemma:lb' | ||
| 185 | +3.397151 O b'lemma:Custom' | ||
| 186 | +3.387581 O b'lemma:rep3' | ||
| 187 | +3.356308 O b'lemma:.' | ||
| 188 | +3.356308 O b'postag:.' | ||
| 189 | +3.347331 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 190 | +3.332260 O b'postag:VBN' | ||
| 191 | +3.317828 Technique b'lemma:chip-seq' | ||
| 192 | +3.289766 Technique b'lemma:rnaseq' | ||
| 193 | +3.273328 Supp b'lemma:rifampicin' | ||
| 194 | +3.260083 Air b'postag:RB' | ||
| 195 | +3.239788 O b'lemma:\xcf\x8332' | ||
| 196 | +3.184025 Supp b'lemma:no3' | ||
| 197 | +3.179953 Supp b'-1:lemma:with' | ||
| 198 | +3.167149 Gtype b'lemma:fnr8myc' | ||
| 199 | +3.116958 Supp b'lemma:nitrate' | ||
| 200 | +3.090571 Gtype b'+1:lemma:ph5' | ||
| 201 | +3.048182 O b'lemma:rep2' | ||
| 202 | +3.022284 Gtype b'lemma:\xce\xb4fur' | ||
| 203 | +3.020572 Supp b'-1:lemma:Cra' | ||
| 204 | +2.950744 O b'-1:lemma:type' | ||
| 205 | +2.942210 Supp b'lemma:dpd' | ||
| 206 | +2.937225 Technique b'lemma:ChIP-Seq' | ||
| 207 | +2.936793 Gtype b'lemma:\xce\xb4soxr' | ||
| 208 | +2.927620 Gtype b'lemma:delta-fnr' | ||
| 209 | +2.925981 O b'-1:lemma:lb' | ||
| 210 | +2.918937 Gtype b'lemma:dfnr' | ||
| 211 | +2.900745 Anti b'lemma:none' | ||
| 212 | +2.897719 Gtype b'+1:lemma:with' | ||
| 213 | +2.890673 O b'+1:lemma:pq' | ||
| 214 | +2.880633 Agit b'+1:lemma:rpm' | ||
| 215 | +2.873201 O b'lemma:CEL' | ||
| 216 | +2.867468 Agit b'lemma:rpm' | ||
| 217 | +2.840511 Air b'-1:lemma:-' | ||
| 218 | +2.820801 Technique b'-1:lemma:IP' | ||
| 219 | +2.805716 Anti b'lemma:\xcf\x8332' | ||
| 220 | +2.773458 O b'lemma:ompr' | ||
| 221 | +2.771820 Med b'-1:lemma:ml' | ||
| 222 | +2.757736 Supp b'lemma:Leu' | ||
| 223 | +2.751066 O b'lemma:chip' | ||
| 224 | +2.746879 Med b'+1:lemma:0.4' | ||
| 225 | +2.739214 O b'lemma:with' | ||
| 226 | +2.708793 Gversion b'-1:lemma:nc' | ||
| 227 | +2.677018 Gtype b'lemma:nsrr' | ||
| 228 | +2.670707 Anti b'lemma:seqa' | ||
| 229 | +2.659020 O b'-1:lemma:glucose' | ||
| 230 | +2.657995 Air b'lemma:anaeroibc' | ||
| 231 | +2.657818 Supp b'+1:lemma:Deficient' | ||
| 232 | +2.656948 O b'-1:lemma:0.3' | ||
| 233 | +2.632783 Supp b'-1:lemma:vol' | ||
| 234 | +2.623222 Supp b'-1:lemma:+' | ||
| 235 | +2.618308 Med b'lemma:m63' | ||
| 236 | +2.613887 Gtype b'lemma:pk4854' | ||
| 237 | +2.602756 Anti b'+1:lemma:antibody' | ||
| 238 | +2.584538 Gversion b'lemma:chip-seq' | ||
| 239 | +2.544864 Gversion b'lemma:u00096' | ||
| 240 | +2.544864 Gversion b'+1:lemma:.2' | ||
| 241 | +2.544234 Air b'lemma:anaerobically' | ||
| 242 | +2.544093 O b'postag:VBG' | ||
| 243 | +2.528939 Gtype b'-1:lemma:ptac' | ||
| 244 | +2.520188 Gtype b'lemma:delta-arca' | ||
| 245 | +2.516132 Gversion b'lemma:000913' | ||
| 246 | +2.509681 Vess b'lemma:flask' | ||
| 247 | +2.509681 Vess b'-1:lemma:warm' | ||
| 248 | +2.499520 Supp b'lemma:Fe' | ||
| 249 | +2.491894 Substrain b'+1:lemma:phtpg' | ||
| 250 | +2.487911 O b'-1:lemma:Aerobic' | ||
| 251 | +2.475312 Temp b'-1:lemma:43' | ||
| 252 | +2.473537 Phase b'-1:lemma:mid-log' | ||
| 253 | +2.445140 pH b'+1:postag:CD' | ||
| 254 | +2.435584 O b'-1:lemma:stpa' | ||
| 255 | +2.432404 O b'+1:lemma:coli' | ||
| 256 | +2.392472 Technique b'-1:lemma:chip-exo' | ||
| 257 | +2.379148 Air b'lemma:aerobically' | ||
| 258 | +2.378189 Gversion b'lemma:.2' | ||
| 259 | +2.378189 Gversion b'-1:lemma:u00096' | ||
| 260 | +2.373909 Med b'lemma:media' | ||
| 261 | +2.372719 Temp b'lemma:\xc2\xb0c' | ||
| 262 | +2.370280 O b'lemma:affyexp' | ||
| 263 | +2.367475 Supp b'lemma:fructose' | ||
| 264 | +2.367118 pH b'lemma:ph5' | ||
| 265 | +2.367118 pH b'+1:lemma:.5' | ||
| 266 | +2.365883 O b'lemma:harbor' | ||
| 267 | +2.365510 Gtype b'+1:lemma:_' | ||
| 268 | +2.364550 O b'lemma:chip-arca' | ||
| 269 | +2.364293 Supp b'+1:lemma:1' | ||
| 270 | +2.351215 Supp b'lemma:arginine' | ||
| 271 | +2.338576 O b'+1:lemma:od600' | ||
| 272 | +2.338214 Phase b'lemma:phase' | ||
| 273 | +2.325110 O b'lemma:s' | ||
| 274 | +2.324133 Supp b'+1:lemma:mm' | ||
| 275 | +2.321311 Gtype b'+1:lemma:pq' | ||
| 276 | +2.296132 Supp b'-1:lemma:sodium' | ||
| 277 | +2.261992 Temp b'-1:lemma:\xcf\x8332' | ||
| 278 | +2.260351 Substrain b'lemma:mg1655star' | ||
| 279 | +2.248740 Gtype b'lemma:WT' | ||
| 280 | +2.246446 Supp b'lemma:Adenine' | ||
| 281 | +2.241646 Temp b'+1:lemma:in' | ||
| 282 | +2.224289 Anti b'lemma:anti-myc' | ||
| 283 | +2.211744 Med b'lemma:broth' | ||
| 284 | +2.211744 Med b'-1:lemma:L' | ||
| 285 | +2.206966 O b'+1:lemma:arca-8myc' | ||
| 286 | +2.206282 Med b'+1:lemma:2.0' | ||
| 287 | +2.189025 Med b'lemma:L' | ||
| 288 | +2.189025 Med b'+1:lemma:broth' | ||
| 289 | +2.156370 Air b'lemma:Anaerobic' | ||
| 290 | +2.151046 Temp b'lemma:43' | ||
| 291 | +2.123118 Temp b'+1:lemma:\xc2\xb0c' | ||
| 292 | +2.116886 Gtype b'lemma:\xce\xb4oxyr' | ||
| 293 | +2.111247 O b'-1:lemma:0.3-0.35' | ||
| 294 | +2.110756 Gtype b'lemma:\xce\xb4ompr' | ||
| 295 | +2.098031 O b'+1:lemma:250' | ||
| 296 | +2.072829 OD b'lemma:od450' | ||
| 297 | +2.054078 O b'-1:lemma:l1' | ||
| 298 | +2.027132 O b'postag:DT' | ||
| 299 | +2.020949 Technique b'+1:lemma:chip-exo' | ||
| 300 | +2.012421 Med b'lemma:minimal' | ||
| 301 | +2.004375 Gtype b'+1:lemma:flagtag' | ||
| 302 | +1.990269 O b'-1:lemma:\xc2\xb0c' | ||
| 303 | +1.950886 O b'+1:postag:RB' | ||
| 304 | +1.941939 Supp b'+1:lemma:2' | ||
| 305 | +1.933357 O b'lemma:culture' | ||
| 306 | +1.927257 O b'-1:lemma:anaerobic' | ||
| 307 | +1.918285 O b'+1:lemma:mid-log' | ||
| 308 | +1.906662 O b'postag:NNS' | ||
| 309 | +1.903182 Gtype b'lemma:deltaseqa' | ||
| 310 | +1.903182 Gtype b'-1:lemma:old' | ||
| 311 | +1.889101 Gtype b'lemma:ptac' | ||
| 312 | +1.886365 Gtype b'-1:postag:VBG' | ||
| 313 | +1.879594 O b'+1:lemma:chip-seq' | ||
| 314 | +1.877669 O b'lemma:contain' | ||
| 315 | +1.875514 O b'lemma:ml' | ||
| 316 | +1.873847 O b'+1:lemma:43' | ||
| 317 | +1.872843 O b'lemma:genotype/variation' | ||
| 318 | +1.866446 O b'lemma:soxs' | ||
| 319 | +1.866446 O b'lemma:soxr' | ||
| 320 | +1.865566 Gversion b'lemma:_' | ||
| 321 | +1.858956 Temp b'-1:lemma:sample' | ||
| 322 | +1.836548 O b'+1:postag:NNP' | ||
| 323 | +1.835787 O b'lemma::' | ||
| 324 | +1.805360 Technique b'-1:lemma:rna-seq' | ||
| 325 | +1.803739 O b'-1:lemma:into' | ||
| 326 | +1.801193 Supp b'-1:lemma:mm' | ||
| 327 | +1.798395 Temp b'lemma:37' | ||
| 328 | +1.798227 Technique b'-1:lemma:_' | ||
| 329 | +1.796930 Gtype b'-1:lemma:rpob' | ||
| 330 | +1.786304 Air b'-1:postag::' | ||
| 331 | +1.781423 Med b'+1:lemma:+' | ||
| 332 | +1.773280 Supp b'-1:lemma:\xc2\xb5m' | ||
| 333 | +1.770143 O b'-1:lemma:phase' | ||
| 334 | +1.766358 Temp b'-1:lemma:37' | ||
| 335 | +1.764495 O b'lemma:condition' | ||
| 336 | +1.753857 O b'lemma:argr' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +0.000080 Gtype b'+1:lemma:-rcb-' | ||
| 341 | +0.000058 O b"lemma:'s" | ||
| 342 | +0.000058 O b'postag:POS' | ||
| 343 | +0.000058 O b'-1:lemma:manufacturer' | ||
| 344 | +0.000058 O b'+1:lemma:instruction' | ||
| 345 | +0.000036 O b'-1:lemma:0.1' | ||
| 346 | +0.000003 Air b'+1:lemma:n2' | ||
| 347 | +0.000003 O b'-1:lemma:4' | ||
| 348 | +-0.000081 O b'+1:lemma:1/100' | ||
| 349 | +-0.000104 O b'+1:lemma:m' | ||
| 350 | +-0.000105 O b'-1:lemma:phosphate' | ||
| 351 | +-0.000227 O b'-1:lemma:0.2' | ||
| 352 | +-0.000342 O b'-1:lemma:with' | ||
| 353 | +-0.000398 Gversion b'-1:postag:NN' | ||
| 354 | +-0.000464 O b'lemma:%' | ||
| 355 | +-0.001787 O b'lemma:7.6' | ||
| 356 | +-0.001787 O b'+1:lemma:;' | ||
| 357 | +-0.002156 Med b'-1:postag:CD' | ||
| 358 | +-0.002253 O b'lemma:;' | ||
| 359 | +-0.002253 O b'-1:lemma:7.6' | ||
| 360 | +-0.002551 O b'+1:lemma:c' | ||
| 361 | +-0.002951 O b'+1:lemma:gadw' | ||
| 362 | +-0.004097 O b'+1:lemma:gade' | ||
| 363 | +-0.008822 Gtype b'+1:postag:CD' | ||
| 364 | +-0.009586 Med b'postag:JJ' | ||
| 365 | +-0.010831 Agit b'-1:postag:NN' | ||
| 366 | +-0.013524 O b'+1:lemma:antibody' | ||
| 367 | +-0.014706 Anti b'+1:postag:JJ' | ||
| 368 | +-0.015602 Supp b'-1:postag:VBN' | ||
| 369 | +-0.020869 O b'-1:postag:DT' | ||
| 370 | +-0.021186 Gtype b'+1:lemma:\xe2\x88\x86' | ||
| 371 | +-0.025812 OD b'postag:NN' | ||
| 372 | +-0.032647 Gtype b'-1:postag:NNP' | ||
| 373 | +-0.035397 O b'lemma:1m' | ||
| 374 | +-0.038554 O b'+1:lemma:rep2' | ||
| 375 | +-0.041306 Gtype b'-1:postag:NN' | ||
| 376 | +-0.042250 O b'+1:lemma:95' | ||
| 377 | +-0.042668 O b'-1:lemma:contain' | ||
| 378 | +-0.044065 Supp b'-1:lemma:.' | ||
| 379 | +-0.044065 Supp b'-1:postag:.' | ||
| 380 | +-0.055911 Supp b'postag:NN' | ||
| 381 | +-0.056075 O b'lemma:anaerobic' | ||
| 382 | +-0.061212 Agit b'postag:NN' | ||
| 383 | +-0.062946 Supp b'-1:lemma:;' | ||
| 384 | +-0.069294 O b'+1:lemma:%' | ||
| 385 | +-0.071027 O b'+1:lemma:~' | ||
| 386 | +-0.078046 O b'+1:lemma:Aerobic' | ||
| 387 | +-0.079728 O b'lemma:m' | ||
| 388 | +-0.082704 O b'-1:lemma:250' | ||
| 389 | +-0.083986 O b'lemma:150' | ||
| 390 | +-0.083986 O b'+1:lemma:mg/ml' | ||
| 391 | +-0.093290 Gtype b'postag:CD' | ||
| 392 | +-0.098235 Temp b'postag:JJ' | ||
| 393 | +-0.102223 Supp b'+1:postag:NNS' | ||
| 394 | +-0.108761 O b'-1:lemma:of' | ||
| 395 | +-0.112579 O b'lemma:nitrate' | ||
| 396 | +-0.112840 O b'+1:lemma:-rrb-' | ||
| 397 | +-0.114513 O b'-1:lemma:~' | ||
| 398 | +-0.115788 Supp b'+1:postag:-RRB-' | ||
| 399 | +-0.126267 Gtype b'+1:lemma:-rrb-' | ||
| 400 | +-0.133344 O b'-1:lemma:chip-exo' | ||
| 401 | +-0.133967 O b'+1:lemma:arginine' | ||
| 402 | +-0.142732 Air b'postag:CD' | ||
| 403 | +-0.146065 O b'-1:lemma:the' | ||
| 404 | +-0.160763 Supp b'postag:CD' | ||
| 405 | +-0.162843 O b'+1:lemma:for' | ||
| 406 | +-0.169917 Gtype b'-1:lemma:mg1655' | ||
| 407 | +-0.174714 Gversion b'+1:postag:NN' | ||
| 408 | +-0.177235 O b'lemma:dissolve' | ||
| 409 | +-0.186720 Air b'-1:postag:JJ' | ||
| 410 | +-0.197341 Supp b'+1:lemma:glucose' | ||
| 411 | +-0.197861 O b'lemma:fructose' | ||
| 412 | +-0.199130 Med b'+1:postag:IN' | ||
| 413 | +-0.212273 Supp b'lemma:mm' | ||
| 414 | +-0.221938 O b'lemma:soxs-8myc' | ||
| 415 | +-0.223055 O b'lemma:nh4cl' | ||
| 416 | +-0.233773 Phase b'-1:lemma:at' | ||
| 417 | +-0.236512 Gtype b'-1:postag:CD' | ||
| 418 | +-0.242620 Technique b'-1:lemma::' | ||
| 419 | +-0.244933 O b'+1:lemma:ph' | ||
| 420 | +-0.246714 O b'lemma:medium' | ||
| 421 | +-0.248246 O b'+1:postag:-LRB-' | ||
| 422 | +-0.257991 O b'-1:lemma:from' | ||
| 423 | +-0.261029 O b'+1:lemma:.' | ||
| 424 | +-0.261029 O b'+1:postag:.' | ||
| 425 | +-0.263252 Med b'-1:postag:NN' | ||
| 426 | +-0.265835 Supp b'-1:lemma:dpd' | ||
| 427 | +-0.268481 O b'lemma:\xe2\x88\x86' | ||
| 428 | +-0.270497 Med b'postag:CD' | ||
| 429 | +-0.275308 O b'lemma:m63' | ||
| 430 | +-0.280878 O b'+1:lemma:_' | ||
| 431 | +-0.290836 O b'lemma:c' | ||
| 432 | +-0.297682 Gtype b'lemma:control' | ||
| 433 | +-0.298656 O b'lemma:oxyr-8myc' | ||
| 434 | +-0.301488 O b'-1:lemma:-lrb-' | ||
| 435 | +-0.302521 Supp b'lemma:10' | ||
| 436 | +-0.313280 O b'-1:lemma:g/l' | ||
| 437 | +-0.314256 Temp b'-1:lemma:\xc2\xb0c' | ||
| 438 | +-0.320715 O b'-1:lemma:cra' | ||
| 439 | +-0.339495 O b'lemma:od600' | ||
| 440 | +-0.344406 O b'lemma:37' | ||
| 441 | +-0.344682 O b'lemma:purify' | ||
| 442 | +-0.346138 O b'lemma:k-12' | ||
| 443 | +-0.356822 O b'lemma:20' | ||
| 444 | +-0.371207 Med b'+1:postag:NN' | ||
| 445 | +-0.380751 O b'-1:lemma:1m' | ||
| 446 | +-0.381781 O b'+1:lemma:fnr' | ||
| 447 | +-0.384037 Supp b'postag:CC' | ||
| 448 | +-0.394501 Phase b'+1:postag:NN' | ||
| 449 | +-0.399220 O b'-1:postag:-LRB-' | ||
| 450 | +-0.413224 Air b'-1:lemma:or' | ||
| 451 | +-0.419362 O b'-1:lemma:iptg' | ||
| 452 | +-0.424394 O b'-1:lemma:m' | ||
| 453 | +-0.428528 O b'-1:lemma:37' | ||
| 454 | +-0.428627 O b'-1:postag:IN' | ||
| 455 | +-0.429204 Supp b'+1:lemma:dpd' | ||
| 456 | +-0.431781 Supp b'+1:lemma:nacl' | ||
| 457 | +-0.443043 Supp b'+1:lemma:rifampicin' | ||
| 458 | +-0.443466 O b'lemma:minimal' | ||
| 459 | +-0.507877 O b'-1:lemma:n2' | ||
| 460 | +-0.508911 Anti b'+1:lemma:anti-fur' | ||
| 461 | +-0.509943 Gtype b'+1:lemma:-lrb-' | ||
| 462 | +-0.514268 O b'+1:postag:IN' | ||
| 463 | +-0.520329 Phase b'postag:JJ' | ||
| 464 | +-0.539205 O b'lemma:ph' | ||
| 465 | +-0.579756 Supp b'-1:lemma:-lrb-' | ||
| 466 | +-0.580872 Supp b'+1:postag:VBN' | ||
| 467 | +-0.593989 Technique b'-1:postag::' | ||
| 468 | +-0.601568 O b'-1:lemma:final' | ||
| 469 | +-0.601806 O b'+1:lemma:supplement' | ||
| 470 | +-0.607385 pH b'postag:NN' | ||
| 471 | +-0.616692 Med b'-1:postag:IN' | ||
| 472 | +-0.619922 O b'lemma:mid-log' | ||
| 473 | +-0.636160 Supp b'-1:postag:-LRB-' | ||
| 474 | +-0.639809 O b'-1:lemma:dfnr' | ||
| 475 | +-0.664912 O b'+1:postag:-RRB-' | ||
| 476 | +-0.668954 O b'lemma:aerobically' | ||
| 477 | +-0.675066 Supp b'-1:postag:NNP' | ||
| 478 | +-0.687148 O b'-1:lemma:mm' | ||
| 479 | +-0.708508 O b'+1:lemma:until' | ||
| 480 | +-0.783735 O b'-1:postag::' | ||
| 481 | +-0.785090 Gtype b'postag:VBG' | ||
| 482 | +-0.800517 O b'-1:lemma:\xe2\x88\x86' | ||
| 483 | +-0.823546 O b'lemma:wt' | ||
| 484 | +-0.853934 O b'lemma:anaerobically' | ||
| 485 | +-0.856870 O b'-1:lemma:until' | ||
| 486 | +-0.876446 O b'-1:lemma:delta' | ||
| 487 | +-0.913178 O b'-1:lemma:co2' | ||
| 488 | +-0.927211 O b'+1:lemma:1m' | ||
| 489 | +-0.944621 Supp b'+1:lemma:acetate' | ||
| 490 | +-0.951325 O b'lemma:methanol' | ||
| 491 | +-0.963142 O b'lemma:aerobic' | ||
| 492 | +-0.977606 Supp b'+1:lemma:fructose' | ||
| 493 | +-0.979652 O b'lemma:nitrogen' | ||
| 494 | +-1.005488 O b'+1:lemma:g/l' | ||
| 495 | +-1.033787 O b'+1:lemma:at' | ||
| 496 | +-1.033823 O b'-1:lemma:rpob' | ||
| 497 | +-1.043256 O b'lemma:2h' | ||
| 498 | +-1.043256 O b'-1:lemma:additional' | ||
| 499 | +-1.063486 O b'+1:lemma:2.0' | ||
| 500 | +-1.064526 O b'lemma:media' | ||
| 501 | +-1.081067 O b'+1:postag:VBG' | ||
| 502 | +-1.106410 O b'-1:lemma:dissolve' | ||
| 503 | +-1.106410 O b'+1:lemma:methanol' | ||
| 504 | +-1.110835 Temp b'postag:NN' | ||
| 505 | +-1.163232 O b'lemma:\xce\xb4fur' | ||
| 506 | +-1.176341 Air b'postag:NN' | ||
| 507 | +-1.224656 O b'-1:lemma:ph' | ||
| 508 | +-1.256518 O b'lemma:of' | ||
| 509 | +-1.275712 Temp b'+1:postag:IN' | ||
| 510 | +-1.278051 O b'postag:VBP' | ||
| 511 | +-1.280734 O b'lemma:30' | ||
| 512 | +-1.283875 Air b'+1:postag:JJ' | ||
| 513 | +-1.295409 O b'-1:lemma:30' | ||
| 514 | +-1.304660 O b'+1:lemma:+' | ||
| 515 | +-1.311794 O b'-1:lemma:1' | ||
| 516 | +-1.371031 O b'-1:lemma:nsrr' | ||
| 517 | +-1.376731 O b'-1:lemma:fresh' | ||
| 518 | +-1.379175 O b'-1:lemma:ml' | ||
| 519 | +-1.408674 O b'-1:lemma:sample' | ||
| 520 | +-1.445343 Anti b'postag:NNP' | ||
| 521 | +-1.459575 Supp b'+1:lemma:-lrb-' | ||
| 522 | +-1.506932 O b'+1:lemma:mm' | ||
| 523 | +-1.510376 Supp b'+1:postag:-LRB-' | ||
| 524 | +-1.529217 Supp b'postag:JJ' | ||
| 525 | +-1.624777 Supp b'+1:lemma:,' | ||
| 526 | +-1.624777 Supp b'+1:postag:,' | ||
| 527 | +-1.649260 Phase b'-1:postag:JJ' | ||
| 528 | +-1.668731 O b'+1:lemma:in' | ||
| 529 | +-1.717464 O b'lemma:0.3' | ||
| 530 | +-1.719606 OD b'+1:postag:NN' | ||
| 531 | +-1.847089 O b'-1:lemma:2' | ||
| 532 | +-1.871052 O b'lemma:rifampicin' | ||
| 533 | +-1.883719 O b'+1:lemma:1' | ||
| 534 | +-1.954580 O b'-1:postag:VBG' | ||
| 535 | +-2.049608 O b'-1:lemma:IP' | ||
| 536 | +-2.191282 O b'-1:lemma:vol' | ||
| 537 | +-2.323780 O b'+1:lemma:2' | ||
| 538 | +-3.283742 O b'-1:lemma:_' | ||
| 539 | +-3.922389 O b'-1:lemma::' | ||
| 540 | + |
CRF/reports/report_Run_2_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.1779311060486324, 'c2': 0.0005619148999585256} | ||
| 5 | +best CV score:0.8815860410516979 | ||
| 6 | +model size: 0.07M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7874835473429163 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 1.000 0.931 0.964 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.543 0.362 0.435 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.893 0.788 0.837 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.677 0.799 0.733 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.808 0.778 0.787 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 7.599672 | ||
| 32 | +Temp -> Temp 6.866268 | ||
| 33 | +OD -> OD 6.223914 | ||
| 34 | +Med -> Med 6.223896 | ||
| 35 | +Anti -> Anti 5.733249 | ||
| 36 | +Supp -> Supp 5.501969 | ||
| 37 | +Phase -> Phase 5.255937 | ||
| 38 | +Air -> Air 5.242444 | ||
| 39 | +Gversion -> Gversion 4.759517 | ||
| 40 | +Technique -> Technique 4.572796 | ||
| 41 | +Gtype -> Gtype 4.408618 | ||
| 42 | +pH -> pH 4.148766 | ||
| 43 | +O -> O 3.770155 | ||
| 44 | +O -> Technique 1.394833 | ||
| 45 | +Air -> O 0.934701 | ||
| 46 | +O -> Supp 0.603143 | ||
| 47 | +Gtype -> Supp 0.602203 | ||
| 48 | +O -> Temp 0.531294 | ||
| 49 | +O -> Gtype 0.244043 | ||
| 50 | +Substrain -> Gtype 0.178777 | ||
| 51 | +Temp -> O 0.116666 | ||
| 52 | +O -> Anti 0.073374 | ||
| 53 | +Technique -> Air 0.057205 | ||
| 54 | +O -> Phase 0.016593 | ||
| 55 | +Med -> O 0.014656 | ||
| 56 | +O -> OD 0.003771 | ||
| 57 | +O -> pH 0.001976 | ||
| 58 | +Anti -> O -0.000356 | ||
| 59 | +Phase -> O -0.013827 | ||
| 60 | +Supp -> O -0.037801 | ||
| 61 | +Gversion -> O -0.118955 | ||
| 62 | +OD -> O -0.146201 | ||
| 63 | +Air -> Temp -0.162047 | ||
| 64 | +O -> Med -0.221356 | ||
| 65 | +Gtype -> Anti -0.235366 | ||
| 66 | +OD -> Air -0.430187 | ||
| 67 | +Technique -> O -0.658505 | ||
| 68 | +Supp -> Med -0.680587 | ||
| 69 | +O -> Air -1.100972 | ||
| 70 | +Gtype -> O -1.334900 | ||
| 71 | +Med -> Supp -1.533125 | ||
| 72 | +Substrain -> O -2.088700 | ||
| 73 | + | ||
| 74 | + | ||
| 75 | +Top unlikely transitions: | ||
| 76 | +Agit -> Agit 7.599672 | ||
| 77 | +Temp -> Temp 6.866268 | ||
| 78 | +OD -> OD 6.223914 | ||
| 79 | +Med -> Med 6.223896 | ||
| 80 | +Anti -> Anti 5.733249 | ||
| 81 | +Supp -> Supp 5.501969 | ||
| 82 | +Phase -> Phase 5.255937 | ||
| 83 | +Air -> Air 5.242444 | ||
| 84 | +Gversion -> Gversion 4.759517 | ||
| 85 | +Technique -> Technique 4.572796 | ||
| 86 | +Gtype -> Gtype 4.408618 | ||
| 87 | +pH -> pH 4.148766 | ||
| 88 | +O -> O 3.770155 | ||
| 89 | +O -> Technique 1.394833 | ||
| 90 | +Air -> O 0.934701 | ||
| 91 | +O -> Supp 0.603143 | ||
| 92 | +Gtype -> Supp 0.602203 | ||
| 93 | +O -> Temp 0.531294 | ||
| 94 | +O -> Gtype 0.244043 | ||
| 95 | +Substrain -> Gtype 0.178777 | ||
| 96 | +Temp -> O 0.116666 | ||
| 97 | +O -> Anti 0.073374 | ||
| 98 | +Technique -> Air 0.057205 | ||
| 99 | +O -> Phase 0.016593 | ||
| 100 | +Med -> O 0.014656 | ||
| 101 | +O -> OD 0.003771 | ||
| 102 | +O -> pH 0.001976 | ||
| 103 | +Anti -> O -0.000356 | ||
| 104 | +Phase -> O -0.013827 | ||
| 105 | +Supp -> O -0.037801 | ||
| 106 | +Gversion -> O -0.118955 | ||
| 107 | +OD -> O -0.146201 | ||
| 108 | +Air -> Temp -0.162047 | ||
| 109 | +O -> Med -0.221356 | ||
| 110 | +Gtype -> Anti -0.235366 | ||
| 111 | +OD -> Air -0.430187 | ||
| 112 | +Technique -> O -0.658505 | ||
| 113 | +Supp -> Med -0.680587 | ||
| 114 | +O -> Air -1.100972 | ||
| 115 | +Gtype -> O -1.334900 | ||
| 116 | +Med -> Supp -1.533125 | ||
| 117 | +Substrain -> O -2.088700 | ||
| 118 | + | ||
| 119 | + | ||
| 120 | +Top positive: | ||
| 121 | +10.204453 Air b'word[:2]:Ae' | ||
| 122 | +7.959700 Strain b'+1:lemma:substr' | ||
| 123 | +7.931315 Gtype b'word[:1]:\xce\x94' | ||
| 124 | +7.211296 O b'lemma:2' | ||
| 125 | +6.951384 Technique b'word[:2]:Ch' | ||
| 126 | +6.897705 Air b'word[:2]:An' | ||
| 127 | +6.430948 O b'word[:2]:re' | ||
| 128 | +6.304459 Supp b'+1:lemma:\xc2\xb5m' | ||
| 129 | +6.277176 O b'lemma:3' | ||
| 130 | +6.259509 O b'-1:lemma:tag' | ||
| 131 | +5.784951 Phase b'lemma:stationary' | ||
| 132 | +5.680889 O b'lemma:1' | ||
| 133 | +5.565991 Air b'lemma:anaerobic' | ||
| 134 | +5.496150 O b'lemma:-' | ||
| 135 | +5.307683 Phase b'lemma:mid-log' | ||
| 136 | +5.051659 O b'lemma:a' | ||
| 137 | +4.964154 O b'+1:lemma:pq' | ||
| 138 | +4.949696 O b'lemma:with' | ||
| 139 | +4.849415 Gversion b'-1:lemma:nc' | ||
| 140 | +4.834323 Substrain b'word[:2]:MG' | ||
| 141 | +4.807181 O b'lemma:_' | ||
| 142 | +4.807181 O b'word[:1]:_' | ||
| 143 | +4.804254 Supp b'-1:lemma:Cra' | ||
| 144 | +4.759024 Gtype b'lemma:wt' | ||
| 145 | +4.715524 Supp b'lemma:Iron' | ||
| 146 | +4.715524 Supp b'word[:2]:Ir' | ||
| 147 | +4.706542 Supp b'lemma:arginine' | ||
| 148 | +4.646874 Supp b'-1:lemma:vol' | ||
| 149 | +4.197413 O b'word[:2]:Cr' | ||
| 150 | +4.195753 O b'-1:lemma:lb' | ||
| 151 | +4.181423 Gtype b'word[:2]:Fl' | ||
| 152 | +4.134022 OD b'word[:1]:O' | ||
| 153 | +4.052226 Med b'lemma:MOPS' | ||
| 154 | +4.052226 Med b'word[:2]:MO' | ||
| 155 | +4.022958 pH b'word[:2]:pH' | ||
| 156 | +3.975313 Temp b'-1:lemma:sample' | ||
| 157 | +3.962014 Gversion b'lemma:chip-seq' | ||
| 158 | +3.951951 Phase b'word[:2]:ex' | ||
| 159 | +3.931899 Supp b'-1:lemma:with' | ||
| 160 | +3.883643 Gtype b'lemma:arca8myc' | ||
| 161 | +3.879479 Supp b'word[:2]:ni' | ||
| 162 | +3.856134 Temp b'+1:lemma:in' | ||
| 163 | +3.810759 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 164 | +3.789132 Supp b'-1:lemma:+' | ||
| 165 | +3.786509 O b'word[:2]:ha' | ||
| 166 | +3.757509 Gtype b'word[:1]:d' | ||
| 167 | +3.684952 Supp b'lemma:nacl' | ||
| 168 | +3.663349 O b'word[:2]:Cu' | ||
| 169 | +3.647265 O b'word[:2]:ge' | ||
| 170 | +3.618268 Technique b'word[:2]:RN' | ||
| 171 | +3.420924 Med b'-1:lemma:ml' | ||
| 172 | +3.399171 O b'lemma:.' | ||
| 173 | +3.399171 O b'postag:.' | ||
| 174 | +3.399171 O b'postag[:1]:.' | ||
| 175 | +3.295302 O b'-1:lemma:0.3' | ||
| 176 | +3.233537 O b'-1:lemma:glucose' | ||
| 177 | +3.232228 Anti b'+1:lemma:antibody' | ||
| 178 | +3.166537 O b'word[:1]:B' | ||
| 179 | +3.151800 Gtype b'lemma:type' | ||
| 180 | +3.151800 Gtype b'word[:2]:ty' | ||
| 181 | +3.074513 Supp b'word[:1]:I' | ||
| 182 | +3.066493 O b'word[:1]:G' | ||
| 183 | +3.049541 O b'-1:lemma:into' | ||
| 184 | +2.995715 O b'word[:2]:Rp' | ||
| 185 | +2.974033 Temp b'-1:lemma:\xcf\x8332' | ||
| 186 | +2.939937 O b'lemma:delta' | ||
| 187 | +2.929545 O b'word[:1]:E' | ||
| 188 | +2.889138 Supp b'lemma:acetate' | ||
| 189 | +2.884567 O b'word[:1]:S' | ||
| 190 | +2.849582 Supp b'lemma:pq' | ||
| 191 | +2.849582 Supp b'word[:2]:PQ' | ||
| 192 | +2.796468 Med b'+1:lemma:0.4' | ||
| 193 | +2.748041 Gtype b'word[:2]:cr' | ||
| 194 | +2.715155 O b'postag::' | ||
| 195 | +2.715155 O b'postag[:1]::' | ||
| 196 | +2.711740 Gtype b'word[:1]:w' | ||
| 197 | +2.648443 O b'-1:lemma:0.3-0.35' | ||
| 198 | +2.642979 Temp b'-1:lemma:43' | ||
| 199 | +2.605602 Supp b'+1:lemma:1' | ||
| 200 | +2.584485 Med b'word[:1]:M' | ||
| 201 | +2.543511 Gtype b'lemma:nsrr' | ||
| 202 | +2.543511 Gtype b'word[:2]:Ns' | ||
| 203 | +2.528316 Supp b'+1:lemma:mm' | ||
| 204 | +2.526101 Gtype b'word[:1]:W' | ||
| 205 | +2.518551 Supp b'+1:lemma:2' | ||
| 206 | +2.493071 Technique b'lemma:ChIP-exo' | ||
| 207 | +2.492470 Gtype b'word[:2]:PK' | ||
| 208 | +2.417633 O b'lemma:ompr' | ||
| 209 | +2.417633 O b'word[:2]:Om' | ||
| 210 | +2.403384 O b'lemma:purr' | ||
| 211 | +2.399480 Air b'-1:lemma:ChIP-Seq' | ||
| 212 | +2.385701 Phase b'-1:lemma:until' | ||
| 213 | +2.383512 Gtype b'word[:1]:t' | ||
| 214 | +2.374150 Gtype b'-1:lemma:rpob' | ||
| 215 | +2.368626 O b'word[:1]:R' | ||
| 216 | +2.336211 Supp b'-1:lemma:final' | ||
| 217 | +2.331497 Gversion b'word[:2]:00' | ||
| 218 | +2.322056 O b'+1:lemma:od600' | ||
| 219 | +2.317008 O b'lemma:Custom' | ||
| 220 | +2.307666 Gversion b'lemma:asm584v2' | ||
| 221 | +2.307666 Gversion b'word[:2]:AS' | ||
| 222 | +2.305354 Med b'lemma:L' | ||
| 223 | +2.305354 Med b'+1:lemma:broth' | ||
| 224 | +2.285067 Supp b'lemma:sodium' | ||
| 225 | +2.270312 O b'postag:CC' | ||
| 226 | +2.270312 O b'postag[:2]:CC' | ||
| 227 | +2.257396 Air b'word[:1]:a' | ||
| 228 | +2.233372 Med b'+1:lemma:g/l' | ||
| 229 | +2.223950 Supp b'+1:lemma:phosphate' | ||
| 230 | +2.222780 O b'+1:lemma:mid-log' | ||
| 231 | +2.221972 O b'-1:lemma:type' | ||
| 232 | +2.203153 O b'word[:1]:C' | ||
| 233 | +2.199367 Med b'+1:lemma:2.0' | ||
| 234 | +2.195464 Gversion b'lemma:nc' | ||
| 235 | +2.195464 Gversion b'word[:2]:NC' | ||
| 236 | +2.192101 O b'+1:postag:RB' | ||
| 237 | +2.162744 O b'lemma:b' | ||
| 238 | +2.159358 Air b'-1:lemma:co2' | ||
| 239 | +2.157857 Supp b'+1:lemma:1m' | ||
| 240 | +2.150708 O b'-1:lemma:Aerobic' | ||
| 241 | +2.149348 Air b'+1:postag:IN' | ||
| 242 | +2.138880 Anti b'hGreek' | ||
| 243 | +2.137978 O b'+1:lemma:43' | ||
| 244 | +2.122867 O b'postag:IN' | ||
| 245 | +2.122867 O b'postag[:1]:I' | ||
| 246 | +2.122867 O b'postag[:2]:IN' | ||
| 247 | +2.118447 Supp b'word[:2]:Fe' | ||
| 248 | +2.105815 Anti b'word[:2]:an' | ||
| 249 | +2.075029 Supp b'+1:lemma:and' | ||
| 250 | +2.072990 Gtype b'symb' | ||
| 251 | +2.065880 O b'+1:postag:NNP' | ||
| 252 | +2.062690 O b'+1:lemma:250' | ||
| 253 | +2.020409 Gtype b'-1:postag:VBG' | ||
| 254 | +2.013701 Gtype b'lemma:flag-tag' | ||
| 255 | +2.013701 Gtype b'-1:lemma:c-terminal' | ||
| 256 | +1.989019 Substrain b'word[:1]:M' | ||
| 257 | +1.972823 Agit b'+1:lemma:rpm' | ||
| 258 | +1.953612 Supp b'lemma:Fe' | ||
| 259 | +1.940845 O b'lemma:chip' | ||
| 260 | +1.936105 Med b'word[:1]:L' | ||
| 261 | +1.928291 Supp b'lemma:rifampicin' | ||
| 262 | +1.926687 Supp b'word[:2]:gl' | ||
| 263 | +1.915939 Supp b'word[:2]:ri' | ||
| 264 | +1.913797 Gversion b'lemma:.2' | ||
| 265 | +1.913797 Gversion b'-1:lemma:u00096' | ||
| 266 | +1.913797 Gversion b'word[:2]:.2' | ||
| 267 | +1.910063 Supp b'lemma:fructose' | ||
| 268 | +1.909338 Supp b'word[:2]:30' | ||
| 269 | +1.896702 O b'lemma:growth' | ||
| 270 | +1.895943 Supp b'postag:VBP' | ||
| 271 | +1.892910 Gtype b'+1:lemma:type' | ||
| 272 | +1.889532 O b'lemma:0.4' | ||
| 273 | +1.871889 Gtype b'lemma:\xe2\x88\x86' | ||
| 274 | +1.871889 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 275 | +1.871050 O b'lemma:at' | ||
| 276 | +1.869248 O b'word[:2]:In' | ||
| 277 | +1.859503 Gtype b'word[:1]:F' | ||
| 278 | +1.851083 Supp b'word[:2]:ac' | ||
| 279 | +1.849424 O b'-1:lemma:anaerobic' | ||
| 280 | +1.842373 O b'-1:lemma:media' | ||
| 281 | +1.841449 Supp b'-1:postag:CC' | ||
| 282 | +1.836269 O b'lemma:ml' | ||
| 283 | +1.836269 O b'word[:2]:ml' | ||
| 284 | +1.828600 O b'word[:1]:i' | ||
| 285 | +1.828258 Gtype b'word[:1]:f' | ||
| 286 | +1.827189 Technique b'word[:1]:R' | ||
| 287 | +1.813413 O b'-1:lemma:mg1655' | ||
| 288 | +1.805298 Temp b'lemma:43' | ||
| 289 | +1.805298 Temp b'word[:2]:43' | ||
| 290 | +1.800703 Med b'lemma:broth' | ||
| 291 | +1.800703 Med b'-1:lemma:L' | ||
| 292 | +1.800703 Med b'word[:2]:br' | ||
| 293 | +1.795613 O b'word[:1]:u' | ||
| 294 | +1.759212 O b'postag[:1]:V' | ||
| 295 | +1.759212 O b'postag[:2]:VB' | ||
| 296 | +1.754974 Gtype b'-1:lemma:_' | ||
| 297 | +1.745663 Supp b'word[:1]:1' | ||
| 298 | +1.723877 Supp b'lemma:Leu' | ||
| 299 | +1.723877 Supp b'word[:2]:Le' | ||
| 300 | +1.721581 Technique b'lemma:chipseq' | ||
| 301 | +1.707824 Phase b'+1:postag:NNS' | ||
| 302 | +1.696873 Gtype b'-1:lemma:vector' | ||
| 303 | +1.690920 Air b'word[:2]:an' | ||
| 304 | +1.681189 Gtype b'word[:2]:Ar' | ||
| 305 | +1.652222 O b'+1:postag:VBZ' | ||
| 306 | +1.635512 O b'+1:lemma:30' | ||
| 307 | +1.623155 Med b'+1:lemma:-lrb-' | ||
| 308 | +1.621988 O b'-1:lemma:stpa' | ||
| 309 | +1.619973 Substrain b'+1:lemma:phtpg' | ||
| 310 | +1.619895 Vess b'lemma:flask' | ||
| 311 | +1.619895 Vess b'-1:lemma:warm' | ||
| 312 | +1.613546 Supp b'+1:lemma:min' | ||
| 313 | +1.611072 Vess b'word[:2]:fl' | ||
| 314 | +1.610373 O b'+1:postag:VBN' | ||
| 315 | +1.603394 Air b'+1:lemma:until' | ||
| 316 | +1.591021 Temp b'-1:lemma:degree' | ||
| 317 | +1.586003 O b'word[:1]:-' | ||
| 318 | +1.583870 O b'-1:lemma:phase' | ||
| 319 | +1.582561 Supp b'lemma:2h' | ||
| 320 | +1.582561 Supp b'-1:lemma:additional' | ||
| 321 | + | ||
| 322 | + | ||
| 323 | +Top negative: | ||
| 324 | +-0.059848 OD b'postag[:1]:N' | ||
| 325 | +-0.059848 OD b'postag[:2]:NN' | ||
| 326 | +-0.059922 O b'-1:lemma:phosphate' | ||
| 327 | +-0.060173 Technique b'-1:lemma::' | ||
| 328 | +-0.060454 O b'word[:1]:2' | ||
| 329 | +-0.061725 OD b'+1:lemma:0.4' | ||
| 330 | +-0.062364 Technique b'postag[:1]:N' | ||
| 331 | +-0.062364 Technique b'postag[:2]:NN' | ||
| 332 | +-0.063877 Gtype b'word[:1]:-' | ||
| 333 | +-0.063940 O b'-1:lemma:-lrb-' | ||
| 334 | +-0.065863 Supp b'-1:postag:NN' | ||
| 335 | +-0.066673 OD b'lemma:0.4' | ||
| 336 | +-0.067069 O b'word[:2]:fi' | ||
| 337 | +-0.068494 O b'word[:1]:.' | ||
| 338 | +-0.070950 Air b'postag:CC' | ||
| 339 | +-0.070950 Air b'postag[:2]:CC' | ||
| 340 | +-0.078141 O b'word[:1]:g' | ||
| 341 | +-0.079781 Supp b'word[:2]:10' | ||
| 342 | +-0.085611 O b'-1:postag:-LRB-' | ||
| 343 | +-0.085744 O b'lemma:minimal' | ||
| 344 | +-0.086337 O b'word[:1]:d' | ||
| 345 | +-0.087082 Supp b'word[:2]:vo' | ||
| 346 | +-0.091121 Gtype b'+1:postag:NN' | ||
| 347 | +-0.094589 Supp b'postag:CD' | ||
| 348 | +-0.094589 Supp b'postag[:2]:CD' | ||
| 349 | +-0.098403 Temp b'-1:lemma:\xc2\xb0c' | ||
| 350 | +-0.099548 O b'+1:postag:-LRB-' | ||
| 351 | +-0.099870 O b'+1:lemma:rep2' | ||
| 352 | +-0.103006 O b'+1:lemma:1/100' | ||
| 353 | +-0.107449 Gversion b'+1:postag:NN' | ||
| 354 | +-0.108265 Temp b'postag[:1]:N' | ||
| 355 | +-0.108265 Temp b'postag[:2]:NN' | ||
| 356 | +-0.108397 Supp b'-1:lemma:.' | ||
| 357 | +-0.108397 Supp b'-1:postag:.' | ||
| 358 | +-0.109037 Gtype b'postag[:1]:V' | ||
| 359 | +-0.109037 Gtype b'postag[:2]:VB' | ||
| 360 | +-0.109312 Supp b'lemma:10' | ||
| 361 | +-0.113057 O b'+1:lemma:%' | ||
| 362 | +-0.120224 Phase b'-1:lemma:at' | ||
| 363 | +-0.130743 O b'+1:postag:CD' | ||
| 364 | +-0.133476 Supp b'lemma:,' | ||
| 365 | +-0.133476 Supp b'postag:,' | ||
| 366 | +-0.133476 Supp b'word[:1]:,' | ||
| 367 | +-0.133476 Supp b'postag[:1]:,' | ||
| 368 | +-0.136463 Air b'hUpper' | ||
| 369 | +-0.136463 Air b'hLower' | ||
| 370 | +-0.150682 O b'word[:2]:OD' | ||
| 371 | +-0.151965 O b'-1:lemma:rpob' | ||
| 372 | +-0.154235 O b'+1:lemma:-rrb-' | ||
| 373 | +-0.158600 Gtype b'-1:lemma:mg1655' | ||
| 374 | +-0.164950 O b'word[:1]:M' | ||
| 375 | +-0.174920 Air b'+1:postag:-LRB-' | ||
| 376 | +-0.176710 Med b'lemma:m9' | ||
| 377 | +-0.176710 Med b'word[:2]:M9' | ||
| 378 | +-0.178022 Med b'postag[:1]:C' | ||
| 379 | +-0.180125 O b'-1:lemma:of' | ||
| 380 | +-0.181701 Phase b'+1:postag:NN' | ||
| 381 | +-0.183270 Supp b'postag[:1]:C' | ||
| 382 | +-0.184142 Med b'-1:lemma:m9' | ||
| 383 | +-0.185330 OD b'lemma:od600' | ||
| 384 | +-0.194943 O b'word[:2]:ae' | ||
| 385 | +-0.196910 Technique b'-1:postag::' | ||
| 386 | +-0.198688 Supp b'word[:1]:C' | ||
| 387 | +-0.198890 Gtype b'-1:lemma:-lrb-' | ||
| 388 | +-0.199882 pH b'postag[:1]:N' | ||
| 389 | +-0.199882 pH b'postag[:2]:NN' | ||
| 390 | +-0.200375 Air b'-1:lemma:grow' | ||
| 391 | +-0.201809 O b'lemma:2h' | ||
| 392 | +-0.201809 O b'-1:lemma:additional' | ||
| 393 | +-0.201809 O b'word[:2]:2h' | ||
| 394 | +-0.205749 Supp b'+1:lemma:10' | ||
| 395 | +-0.216714 Gtype b'+1:postag:CD' | ||
| 396 | +-0.224065 O b'+1:postag:-RRB-' | ||
| 397 | +-0.226472 O b'lemma:co2' | ||
| 398 | +-0.226472 O b'word[:2]:CO' | ||
| 399 | +-0.232140 Air b'-1:postag:VBN' | ||
| 400 | +-0.241573 Air b'-1:postag:CC' | ||
| 401 | +-0.242963 Air b'symb' | ||
| 402 | +-0.250464 Phase b'postag[:1]:J' | ||
| 403 | +-0.250464 Phase b'postag[:2]:JJ' | ||
| 404 | +-0.270255 O b'lemma:aerobically' | ||
| 405 | +-0.270737 O b'lemma:media' | ||
| 406 | +-0.271988 O b'word[:2]:gl' | ||
| 407 | +-0.275321 O b'+1:lemma:supplement' | ||
| 408 | +-0.276089 O b'-1:postag:IN' | ||
| 409 | +-0.281202 O b'word[:2]:ce' | ||
| 410 | +-0.282921 O b'-1:lemma:250' | ||
| 411 | +-0.284342 Air b'+1:postag:JJ' | ||
| 412 | +-0.285982 O b'lemma:of' | ||
| 413 | +-0.285982 O b'word[:2]:of' | ||
| 414 | +-0.299888 Supp b'word[:2]:an' | ||
| 415 | +-0.300445 O b'word[:1]:F' | ||
| 416 | +-0.311626 O b'+1:lemma:for' | ||
| 417 | +-0.312645 Phase b'postag:JJ' | ||
| 418 | +-0.314439 Temp b'postag:NN' | ||
| 419 | +-0.318498 O b'+1:lemma:mm' | ||
| 420 | +-0.321300 Supp b'-1:lemma:-lrb-' | ||
| 421 | +-0.328758 O b'lemma:1m' | ||
| 422 | +-0.328758 O b'word[:2]:1M' | ||
| 423 | +-0.333791 O b'-1:lemma:sodium' | ||
| 424 | +-0.336871 Med b'+1:postag:NN' | ||
| 425 | +-0.348304 Gtype b'+1:lemma:-lrb-' | ||
| 426 | +-0.350520 Med b'-1:postag:CD' | ||
| 427 | +-0.352516 O b'lemma:37' | ||
| 428 | +-0.352516 O b'word[:2]:37' | ||
| 429 | +-0.362946 O b'+1:lemma:.' | ||
| 430 | +-0.362946 O b'+1:postag:.' | ||
| 431 | +-0.363307 Med b'-1:postag:NN' | ||
| 432 | +-0.370538 Air b'postag:NN' | ||
| 433 | +-0.375679 Supp b'-1:postag:-LRB-' | ||
| 434 | +-0.378467 O b'+1:postag:VBG' | ||
| 435 | +-0.380556 O b'-1:lemma:ml' | ||
| 436 | +-0.380799 O b'-1:lemma:final' | ||
| 437 | +-0.381345 O b'+1:lemma:ph' | ||
| 438 | +-0.383546 O b'-1:lemma:n2' | ||
| 439 | +-0.385967 O b'lemma:mid-log' | ||
| 440 | +-0.387867 Air b'postag[:1]:N' | ||
| 441 | +-0.387867 Air b'postag[:2]:NN' | ||
| 442 | +-0.397798 Supp b'postag:JJ' | ||
| 443 | +-0.400326 Supp b'postag[:1]:J' | ||
| 444 | +-0.400326 Supp b'postag[:2]:JJ' | ||
| 445 | +-0.407602 O b'-1:lemma:mm' | ||
| 446 | +-0.431970 Med b'-1:postag:IN' | ||
| 447 | +-0.434055 O b'-1:lemma:1m' | ||
| 448 | +-0.445787 Temp b'hGreek' | ||
| 449 | +-0.452175 Med b'symb' | ||
| 450 | +-0.460332 O b'-1:lemma:IP' | ||
| 451 | +-0.467068 O b'-1:lemma:37' | ||
| 452 | +-0.478293 O b'+1:lemma:phosphate' | ||
| 453 | +-0.537372 O b'word[:2]:ni' | ||
| 454 | +-0.545269 O b'-1:lemma:until' | ||
| 455 | +-0.548531 O b'word[:2]:0.' | ||
| 456 | +-0.623964 O b'word[:1]:0' | ||
| 457 | +-0.624246 Supp b'-1:postag:NNP' | ||
| 458 | +-0.632176 O b'lemma:c' | ||
| 459 | +-0.637617 O b'+1:postag:IN' | ||
| 460 | +-0.640663 OD b'hUpper' | ||
| 461 | +-0.640663 OD b'hLower' | ||
| 462 | +-0.643238 O b'lemma:sodium' | ||
| 463 | +-0.678960 O b'word[:2]:pH' | ||
| 464 | +-0.686405 O b'word[:2]:ri' | ||
| 465 | +-0.690472 Air b'-1:lemma:or' | ||
| 466 | +-0.706445 O b'-1:lemma:delta' | ||
| 467 | +-0.723520 O b'+1:lemma:g/l' | ||
| 468 | +-0.736143 Supp b'hGreek' | ||
| 469 | +-0.746481 O b'lemma:methanol' | ||
| 470 | +-0.769671 O b'-1:lemma:nsrr' | ||
| 471 | +-0.784252 Air b'-1:postag:JJ' | ||
| 472 | +-0.788281 Med b'+1:postag:IN' | ||
| 473 | +-0.822122 Supp b'+1:lemma:rifampicin' | ||
| 474 | +-0.838923 Supp b'symb' | ||
| 475 | +-0.852449 Agit b'symb' | ||
| 476 | +-0.867354 O b'-1:lemma:co2' | ||
| 477 | +-0.874419 O b'-1:lemma:30' | ||
| 478 | +-0.894271 O b'word[:2]:me' | ||
| 479 | +-0.895822 O b'word[:2]:mg' | ||
| 480 | +-0.898915 O b'-1:lemma:1' | ||
| 481 | +-0.904279 O b'lemma:0.3' | ||
| 482 | +-0.910372 O b'+1:lemma:at' | ||
| 483 | +-0.910865 Phase b'hUpper' | ||
| 484 | +-0.910865 Phase b'hLower' | ||
| 485 | +-1.005990 O b'-1:postag::' | ||
| 486 | +-1.027364 O b'+1:lemma:1m' | ||
| 487 | +-1.029400 O b'-1:lemma:dissolve' | ||
| 488 | +-1.029400 O b'+1:lemma:methanol' | ||
| 489 | +-1.037454 Gtype b'lemma:delta' | ||
| 490 | +-1.044796 O b'-1:lemma:fresh' | ||
| 491 | +-1.052334 O b'+1:lemma:until' | ||
| 492 | +-1.062610 O b'word[:1]:N' | ||
| 493 | +-1.076834 O b'word[:2]:fl' | ||
| 494 | +-1.106973 O b'word[:2]:30' | ||
| 495 | +-1.108666 Phase b'-1:postag:JJ' | ||
| 496 | +-1.184488 Gtype b'+1:lemma:-rrb-' | ||
| 497 | +-1.190874 Agit b'hUpper' | ||
| 498 | +-1.190874 Agit b'hLower' | ||
| 499 | +-1.198537 Anti b'postag:NNP' | ||
| 500 | +-1.237479 Technique b'postag:NN' | ||
| 501 | +-1.254724 Gtype b'word[:1]:C' | ||
| 502 | +-1.285720 O b'+1:lemma:2.0' | ||
| 503 | +-1.319520 O b'-1:lemma:cra' | ||
| 504 | +-1.367368 O b'-1:lemma:sample' | ||
| 505 | +-1.499105 O b'-1:postag:VBG' | ||
| 506 | +-1.499318 O b'+1:lemma:in' | ||
| 507 | +-1.578496 O b'-1:lemma:ph' | ||
| 508 | +-1.679574 OD b'+1:postag:NN' | ||
| 509 | +-1.738083 O b'word[:2]:Ch' | ||
| 510 | +-1.860176 O b'+1:lemma:1' | ||
| 511 | +-1.912082 O b'lemma:rifampicin' | ||
| 512 | +-1.975467 Supp b'+1:lemma:-lrb-' | ||
| 513 | +-2.013762 Supp b'+1:postag:-LRB-' | ||
| 514 | +-2.120131 O b'+1:lemma:2' | ||
| 515 | +-2.321555 Supp b'+1:lemma:,' | ||
| 516 | +-2.321555 Supp b'+1:postag:,' | ||
| 517 | +-2.461859 O b'word[:1]:P' | ||
| 518 | +-2.555572 Temp b'+1:postag:IN' | ||
| 519 | +-2.561836 O b'-1:lemma:2' | ||
| 520 | +-3.242599 O b'postag:VBP' | ||
| 521 | +-3.584101 O b'-1:lemma:vol' | ||
| 522 | +-5.325671 O b'-1:lemma:_' | ||
| 523 | +-5.823992 O b'-1:lemma::' | ||
| 524 | + |
CRF/reports/report_Run_2_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.13330184503096318, 'c2': 0.015952382909212963} | ||
| 5 | +best CV score:0.8603877155764311 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7890643233991025 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.857 0.818 0.837 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.943 0.971 53 | ||
| 15 | + Temp 1.000 0.690 0.816 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.543 0.362 0.435 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.868 0.776 0.820 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.779 0.813 0.796 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.826 0.763 0.789 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.893287 | ||
| 32 | +Temp -> Temp 6.021557 | ||
| 33 | +Med -> Med 5.295918 | ||
| 34 | +OD -> OD 5.124787 | ||
| 35 | +Anti -> Anti 5.077725 | ||
| 36 | +Phase -> Phase 4.805244 | ||
| 37 | +Supp -> Supp 4.676680 | ||
| 38 | +Gversion -> Gversion 4.270632 | ||
| 39 | +O -> O 4.151009 | ||
| 40 | +Gtype -> Gtype 4.130084 | ||
| 41 | +Air -> Air 4.099435 | ||
| 42 | +Technique -> Technique 3.483421 | ||
| 43 | +pH -> pH 2.997159 | ||
| 44 | +Substrain -> Gtype 1.124559 | ||
| 45 | +O -> Technique 1.003751 | ||
| 46 | +O -> Supp 0.947717 | ||
| 47 | +Air -> O 0.873831 | ||
| 48 | +Temp -> O 0.565967 | ||
| 49 | +O -> Temp 0.479055 | ||
| 50 | +O -> Gtype 0.462638 | ||
| 51 | +Gtype -> Air 0.167055 | ||
| 52 | +Supp -> O 0.160803 | ||
| 53 | +Technique -> Air 0.116967 | ||
| 54 | +O -> OD 0.109397 | ||
| 55 | +Med -> O 0.103673 | ||
| 56 | +O -> Phase 0.083258 | ||
| 57 | +Gtype -> Supp 0.074101 | ||
| 58 | +OD -> O 0.051003 | ||
| 59 | +Phase -> O 0.029928 | ||
| 60 | +Strain -> O 0.000886 | ||
| 61 | +O -> Anti 0.000637 | ||
| 62 | +O -> Gversion 0.000062 | ||
| 63 | +Anti -> Air -0.001399 | ||
| 64 | +Phase -> Supp -0.014135 | ||
| 65 | +Gtype -> Gversion -0.023045 | ||
| 66 | +Technique -> Gtype -0.145953 | ||
| 67 | +Supp -> Technique -0.164756 | ||
| 68 | +Technique -> pH -0.188040 | ||
| 69 | +Supp -> Air -0.262229 | ||
| 70 | +Gtype -> Technique -0.360196 | ||
| 71 | +OD -> Air -0.397656 | ||
| 72 | +Air -> Phase -0.403726 | ||
| 73 | +Gtype -> Med -0.439722 | ||
| 74 | +Gversion -> O -0.476476 | ||
| 75 | +Air -> Supp -0.501806 | ||
| 76 | +Gtype -> Anti -0.567560 | ||
| 77 | +Supp -> Gtype -0.583004 | ||
| 78 | +Air -> Temp -0.652068 | ||
| 79 | +Technique -> O -0.816523 | ||
| 80 | +O -> Air -0.975032 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Anti -> Anti 5.077725 | ||
| 85 | +Phase -> Phase 4.805244 | ||
| 86 | +Supp -> Supp 4.676680 | ||
| 87 | +Gversion -> Gversion 4.270632 | ||
| 88 | +O -> O 4.151009 | ||
| 89 | +Gtype -> Gtype 4.130084 | ||
| 90 | +Air -> Air 4.099435 | ||
| 91 | +Technique -> Technique 3.483421 | ||
| 92 | +pH -> pH 2.997159 | ||
| 93 | +Substrain -> Gtype 1.124559 | ||
| 94 | +O -> Technique 1.003751 | ||
| 95 | +O -> Supp 0.947717 | ||
| 96 | +Air -> O 0.873831 | ||
| 97 | +Temp -> O 0.565967 | ||
| 98 | +O -> Temp 0.479055 | ||
| 99 | +O -> Gtype 0.462638 | ||
| 100 | +Gtype -> Air 0.167055 | ||
| 101 | +Supp -> O 0.160803 | ||
| 102 | +Technique -> Air 0.116967 | ||
| 103 | +O -> OD 0.109397 | ||
| 104 | +Med -> O 0.103673 | ||
| 105 | +O -> Phase 0.083258 | ||
| 106 | +Gtype -> Supp 0.074101 | ||
| 107 | +OD -> O 0.051003 | ||
| 108 | +Phase -> O 0.029928 | ||
| 109 | +Strain -> O 0.000886 | ||
| 110 | +O -> Anti 0.000637 | ||
| 111 | +O -> Gversion 0.000062 | ||
| 112 | +Anti -> Air -0.001399 | ||
| 113 | +Phase -> Supp -0.014135 | ||
| 114 | +Gtype -> Gversion -0.023045 | ||
| 115 | +Technique -> Gtype -0.145953 | ||
| 116 | +Supp -> Technique -0.164756 | ||
| 117 | +Technique -> pH -0.188040 | ||
| 118 | +Supp -> Air -0.262229 | ||
| 119 | +Gtype -> Technique -0.360196 | ||
| 120 | +OD -> Air -0.397656 | ||
| 121 | +Air -> Phase -0.403726 | ||
| 122 | +Gtype -> Med -0.439722 | ||
| 123 | +Gversion -> O -0.476476 | ||
| 124 | +Air -> Supp -0.501806 | ||
| 125 | +Gtype -> Anti -0.567560 | ||
| 126 | +Supp -> Gtype -0.583004 | ||
| 127 | +Air -> Temp -0.652068 | ||
| 128 | +Technique -> O -0.816523 | ||
| 129 | +O -> Air -0.975032 | ||
| 130 | +Gtype -> O -1.058292 | ||
| 131 | +Supp -> Med -1.159468 | ||
| 132 | +Med -> Supp -1.481426 | ||
| 133 | +Substrain -> O -1.534528 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +6.792977 Technique b'lemma[:2]:Ch' | ||
| 138 | +6.185501 O b'lemma:2' | ||
| 139 | +5.372196 O b'lemma:3' | ||
| 140 | +5.171879 O b'-1:lemma:tag' | ||
| 141 | +5.142744 Gtype b'lemma[:1]:\xce\xb4' | ||
| 142 | +4.788508 O b'lemma:1' | ||
| 143 | +4.739414 O b'postag:IN' | ||
| 144 | +4.709882 O b'lemma:-' | ||
| 145 | +4.462687 Technique b'lemma:chipseq' | ||
| 146 | +4.337449 O b'lemma[:2]:re' | ||
| 147 | +4.272091 Supp b'+1:lemma:\xc2\xb5m' | ||
| 148 | +4.219425 O b'lemma:with' | ||
| 149 | +4.162550 O b'+1:lemma:pq' | ||
| 150 | +4.046798 O b'lemma:_' | ||
| 151 | +4.046798 O b'lemma[:1]:_' | ||
| 152 | +4.040972 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 153 | +4.018468 Phase b'lemma:mid-log' | ||
| 154 | +3.950059 Air b'lemma[:2]:ae' | ||
| 155 | +3.882373 O b'postag::' | ||
| 156 | +3.866328 Supp b'lemma:Iron' | ||
| 157 | +3.866328 Supp b'lemma[:2]:Ir' | ||
| 158 | +3.865451 O b'lemma:b' | ||
| 159 | +3.666419 O b'lemma:a' | ||
| 160 | +3.658095 Substrain b'lemma[:2]:mg' | ||
| 161 | +3.641844 Air b'-1:lemma:ChIP-Seq' | ||
| 162 | +3.630211 Supp b'-1:lemma:Cra' | ||
| 163 | +3.616609 O b'postag:CC' | ||
| 164 | +3.541072 Air b'lemma:anaerobic' | ||
| 165 | +3.460006 Air b'lemma[:2]:an' | ||
| 166 | +3.437202 O b'lemma:rpob' | ||
| 167 | +3.400149 Gtype b'lemma:arca8myc' | ||
| 168 | +3.376119 Strain b'+1:lemma:substr' | ||
| 169 | +3.310669 O b'lemma:.' | ||
| 170 | +3.310669 O b'postag:.' | ||
| 171 | +3.265211 O b'-1:lemma:lb' | ||
| 172 | +3.262791 Supp b'-1:lemma:with' | ||
| 173 | +3.123788 Supp b'-1:lemma:vol' | ||
| 174 | +3.100190 Air b'-1:lemma:-' | ||
| 175 | +3.079730 Supp b'lemma:pq' | ||
| 176 | +3.079730 Supp b'lemma[:2]:pq' | ||
| 177 | +3.061798 Agit b'+1:lemma:rpm' | ||
| 178 | +3.060071 O b'-1:lemma:0.3' | ||
| 179 | +2.985771 Supp b'lemma:arginine' | ||
| 180 | +2.958596 O b'lemma[:1]:h' | ||
| 181 | +2.939765 O b'lemma[:2]:ge' | ||
| 182 | +2.920828 O b'lemma:delta' | ||
| 183 | +2.918295 Phase b'lemma:stationary' | ||
| 184 | +2.910332 Supp b'-1:lemma:+' | ||
| 185 | +2.845649 Technique b'lemma[:2]:ch' | ||
| 186 | +2.823670 Gversion b'lemma:chip-seq' | ||
| 187 | +2.791251 O b'postag:VBN' | ||
| 188 | +2.770882 Anti b'+1:lemma:antibody' | ||
| 189 | +2.759206 Gtype b'lemma:type' | ||
| 190 | +2.759206 Gtype b'lemma[:2]:ty' | ||
| 191 | +2.752479 Temp b'+1:lemma:in' | ||
| 192 | +2.715434 Med b'-1:lemma:ml' | ||
| 193 | +2.707247 Air b'lemma:Aerobic' | ||
| 194 | +2.707247 Air b'lemma[:2]:Ae' | ||
| 195 | +2.706748 Med b'+1:lemma:0.4' | ||
| 196 | +2.704634 O b'-1:lemma:glucose' | ||
| 197 | +2.684854 Phase b'lemma[:2]:ex' | ||
| 198 | +2.662573 Anti b'lemma[:2]:an' | ||
| 199 | +2.630158 Technique b'lemma[:2]:rn' | ||
| 200 | +2.608017 Supp b'lemma:acetate' | ||
| 201 | +2.554332 OD b'lemma[:1]:o' | ||
| 202 | +2.549906 Gtype b'lemma:fnr8myc' | ||
| 203 | +2.524063 O b'-1:lemma:0.3-0.35' | ||
| 204 | +2.521537 O b'-1:lemma:Aerobic' | ||
| 205 | +2.508216 Supp b'lemma:rifampicin' | ||
| 206 | +2.505724 O b'lemma:ompr' | ||
| 207 | +2.499756 Supp b'lemma[:2]:ri' | ||
| 208 | +2.491716 O b'lemma:chip' | ||
| 209 | +2.488425 Supp b'-1:lemma:final' | ||
| 210 | +2.473021 Gtype b'lemma[:2]:cr' | ||
| 211 | +2.448300 Med b'lemma:MOPS' | ||
| 212 | +2.448300 Med b'lemma[:1]:M' | ||
| 213 | +2.448300 Med b'lemma[:2]:MO' | ||
| 214 | +2.444945 Supp b'+1:lemma:1' | ||
| 215 | +2.444634 Gtype b'lemma:wt' | ||
| 216 | +2.444634 Gtype b'lemma[:2]:wt' | ||
| 217 | +2.439447 Gtype b'lemma[:2]:ar' | ||
| 218 | +2.423220 Gtype b'lemma[:2]:pk' | ||
| 219 | +2.411016 Technique b'lemma[:1]:C' | ||
| 220 | +2.409772 O b'postag:DT' | ||
| 221 | +2.401919 Supp b'+1:lemma:mm' | ||
| 222 | +2.397549 Supp b'-1:lemma:sodium' | ||
| 223 | +2.386531 Agit b'lemma:rpm' | ||
| 224 | +2.384742 Med b'lemma:broth' | ||
| 225 | +2.384742 Med b'-1:lemma:L' | ||
| 226 | +2.384742 Med b'lemma[:2]:br' | ||
| 227 | +2.380245 Supp b'lemma[:1]:I' | ||
| 228 | +2.354434 O b'lemma[:1]:C' | ||
| 229 | +2.351237 Technique b'-1:lemma:input' | ||
| 230 | +2.341179 Air b'postag:RB' | ||
| 231 | +2.337517 O b'-1:lemma:into' | ||
| 232 | +2.316952 Gtype b'lemma[:2]:de' | ||
| 233 | +2.308227 Gversion b'lemma:asm584v2' | ||
| 234 | +2.304126 Gtype b'lemma:nsrr' | ||
| 235 | +2.304126 Gtype b'lemma[:2]:ns' | ||
| 236 | +2.302775 Gversion b'lemma[:2]:as' | ||
| 237 | +2.247462 Gtype b'lemma[:1]:W' | ||
| 238 | +2.232742 Supp b'lemma[:2]:ni' | ||
| 239 | +2.228857 Gtype b'-1:lemma:_' | ||
| 240 | +2.228364 Med b'lemma:L' | ||
| 241 | +2.228364 Med b'+1:lemma:broth' | ||
| 242 | +2.215606 Gtype b'+1:lemma:type' | ||
| 243 | +2.215192 Supp b'lemma:fructose' | ||
| 244 | +2.213388 O b'-1:lemma:ChIP-exo' | ||
| 245 | +2.205310 Gversion b'lemma[:2]:00' | ||
| 246 | +2.189511 O b'lemma:Custom' | ||
| 247 | +2.189511 O b'lemma[:2]:Cu' | ||
| 248 | +2.189327 Gversion b'lemma:nc' | ||
| 249 | +2.189327 Gversion b'lemma[:2]:nc' | ||
| 250 | +2.187007 Anti b'lemma:none' | ||
| 251 | +2.170324 O b'+1:lemma:or' | ||
| 252 | +2.165483 Phase b'lemma[:1]:e' | ||
| 253 | +2.157215 Air b'lemma[:1]:a' | ||
| 254 | +2.155510 O b'+1:lemma:acetate' | ||
| 255 | +2.137294 O b'-1:lemma:phase' | ||
| 256 | +2.120304 O b'lemma[:2]:om' | ||
| 257 | +2.109931 Temp b'-1:lemma:43' | ||
| 258 | +2.093355 pH b'+1:postag:CD' | ||
| 259 | +2.087626 O b'lemma[:1]:e' | ||
| 260 | +2.082218 Gtype b'+1:lemma::' | ||
| 261 | +2.080609 O b'+1:lemma:mid-log' | ||
| 262 | +2.064412 O b'-1:lemma:type' | ||
| 263 | +2.055018 Temp b'-1:lemma:sample' | ||
| 264 | +2.048893 Temp b'-1:lemma:\xcf\x8332' | ||
| 265 | +2.048779 O b'+1:lemma:od600' | ||
| 266 | +2.037410 Med b'+1:lemma:2.0' | ||
| 267 | +2.035956 O b'+1:postag:NNP' | ||
| 268 | +2.030314 O b'+1:postag:RB' | ||
| 269 | +2.027123 Gtype b'lemma[:1]:w' | ||
| 270 | +2.011116 O b'-1:lemma:anaerobic' | ||
| 271 | +2.006058 Gtype b'lemma[:1]:f' | ||
| 272 | +1.994696 pH b'lemma[:2]:ph' | ||
| 273 | +1.971101 Supp b'lemma:no3' | ||
| 274 | +1.963975 Technique b'+1:lemma:rna-seq' | ||
| 275 | +1.963032 O b'lemma:purr' | ||
| 276 | +1.954191 O b'lemma:Cra' | ||
| 277 | +1.953081 Gtype b'lemma:flag-tag' | ||
| 278 | +1.953081 Gtype b'-1:lemma:c-terminal' | ||
| 279 | +1.929362 Technique b'+1:lemma:chip-exo' | ||
| 280 | +1.926848 Med b'lemma[:1]:m' | ||
| 281 | +1.913449 Substrain b'lemma[:1]:m' | ||
| 282 | +1.912657 Gtype b'-1:lemma:vector' | ||
| 283 | +1.903374 Gtype b'lemma:\xe2\x88\x86' | ||
| 284 | +1.903374 Gtype b'lemma[:1]:\xe2\x88\x86' | ||
| 285 | +1.901605 O b'lemma[:2]:Cr' | ||
| 286 | +1.900522 Supp b'lemma[:2]:gl' | ||
| 287 | +1.899158 O b'lemma[:1]:s' | ||
| 288 | +1.875620 O b'postag:VBG' | ||
| 289 | +1.860683 O b'lemma:n' | ||
| 290 | +1.859831 Strain b'lemma:k-12' | ||
| 291 | +1.859831 Strain b'lemma[:2]:k-' | ||
| 292 | +1.859641 Supp b'lemma[:2]:ac' | ||
| 293 | +1.834220 Supp b'lemma:nacl' | ||
| 294 | +1.834220 Supp b'lemma[:2]:na' | ||
| 295 | +1.829854 Supp b'+1:lemma:2' | ||
| 296 | +1.820248 Strain b'lemma[:1]:k' | ||
| 297 | +1.810126 Temp b'lemma:43' | ||
| 298 | +1.810126 Temp b'lemma[:2]:43' | ||
| 299 | +1.789121 Gtype b'+1:lemma:with' | ||
| 300 | +1.787780 Gversion b'-1:lemma:nc' | ||
| 301 | +1.784140 Med b'-1:lemma:fresh' | ||
| 302 | +1.776852 Gtype b'-1:postag:VBG' | ||
| 303 | +1.769935 Supp b'lemma:Leu' | ||
| 304 | +1.769935 Supp b'lemma[:2]:Le' | ||
| 305 | +1.761067 Gtype b'symb' | ||
| 306 | +1.756726 O b'-1:lemma:stpa' | ||
| 307 | +1.755310 Phase b'-1:lemma:until' | ||
| 308 | +1.753083 Supp b'-1:postag:CC' | ||
| 309 | +1.751530 Anti b'-1:lemma::' | ||
| 310 | +1.746658 O b'lemma:argr' | ||
| 311 | +1.741299 O b'lemma:\xcf\x8332' | ||
| 312 | +1.741299 O b'lemma[:1]:\xcf\x83' | ||
| 313 | +1.741299 O b'lemma[:2]:\xcf\x833' | ||
| 314 | +1.735808 Supp b'lemma:Fe' | ||
| 315 | +1.735808 Supp b'lemma[:2]:Fe' | ||
| 316 | +1.734847 Anti b'hGreek' | ||
| 317 | +1.731060 Gtype b'-1:lemma:knock-out' | ||
| 318 | +1.724076 O b'-1:lemma:aerobically' | ||
| 319 | +1.721770 O b'lemma:A' | ||
| 320 | +1.714736 O b'lemma:0.4' | ||
| 321 | +1.713906 Gtype b'lemma[:1]:t' | ||
| 322 | +1.706889 Air b'+1:postag:IN' | ||
| 323 | +1.699701 Supp b'lemma:glucose' | ||
| 324 | +1.698973 O b'lemma:chip-arca' | ||
| 325 | +1.681807 O b'+1:lemma:coli' | ||
| 326 | +1.680743 O b'+1:lemma:sparging' | ||
| 327 | +1.679592 O b'-1:postag:NNS' | ||
| 328 | +1.678415 Air b'-1:lemma:co2' | ||
| 329 | +1.676578 O b'lemma[:1]:-' | ||
| 330 | +1.669982 pH b'lemma:ph5' | ||
| 331 | +1.669982 pH b'+1:lemma:.5' | ||
| 332 | +1.659378 Substrain b'+1:lemma:phtpg' | ||
| 333 | +1.658130 Gtype b'-1:lemma:rpob' | ||
| 334 | +1.643206 O b'lemma[:1]:c' | ||
| 335 | +1.637539 Gtype b'lemma[:2]:wi' | ||
| 336 | +1.628222 Supp b'+1:lemma:min' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.048858 Air b'lemma:-rrb-' | ||
| 341 | +-0.053617 OD b'-1:lemma:od600' | ||
| 342 | +-0.056105 Supp b'+1:lemma:dpd' | ||
| 343 | +-0.058525 O b'+1:lemma:95' | ||
| 344 | +-0.061956 Supp b'-1:lemma:%' | ||
| 345 | +-0.062560 O b'+1:lemma:cell' | ||
| 346 | +-0.065163 Supp b'lemma:vol' | ||
| 347 | +-0.065163 Supp b'-1:lemma:1/100' | ||
| 348 | +-0.067871 O b'+1:lemma:antibody' | ||
| 349 | +-0.069248 Gtype b'+1:postag:NN' | ||
| 350 | +-0.072048 O b'lemma:2.0' | ||
| 351 | +-0.078220 Supp b'lemma[:2]:vo' | ||
| 352 | +-0.079573 Supp b'-1:postag::' | ||
| 353 | +-0.084349 Supp b'-1:lemma:;' | ||
| 354 | +-0.085848 O b'-1:lemma:-lrb-' | ||
| 355 | +-0.097584 O b'+1:lemma:phosphate' | ||
| 356 | +-0.098013 Supp b'+1:lemma:rifampicin' | ||
| 357 | +-0.104233 Phase b'-1:lemma:at' | ||
| 358 | +-0.109073 O b'lemma:7.6' | ||
| 359 | +-0.109073 O b'+1:lemma:;' | ||
| 360 | +-0.109073 O b'lemma[:2]:7.' | ||
| 361 | +-0.110982 Air b'-1:postag:CC' | ||
| 362 | +-0.115095 O b'+1:lemma:0.3' | ||
| 363 | +-0.124835 Gtype b'lemma[:1]:g' | ||
| 364 | +-0.138288 O b'-1:lemma:g/l' | ||
| 365 | +-0.139335 O b'-1:lemma:control' | ||
| 366 | +-0.140398 O b'lemma:1/100' | ||
| 367 | +-0.140398 O b'+1:lemma:vol' | ||
| 368 | +-0.140398 O b'lemma[:2]:1/' | ||
| 369 | +-0.142417 O b'lemma[:2]:ph' | ||
| 370 | +-0.150417 Supp b'-1:lemma:dpd' | ||
| 371 | +-0.152181 Air b'postag:CC' | ||
| 372 | +-0.156096 Supp b'lemma[:2]:mm' | ||
| 373 | +-0.170571 Supp b'lemma[:1]:v' | ||
| 374 | +-0.176750 Supp b'-1:lemma:.' | ||
| 375 | +-0.176750 Supp b'-1:postag:.' | ||
| 376 | +-0.177644 Air b'+1:postag:JJ' | ||
| 377 | +-0.183264 O b'lemma:ph' | ||
| 378 | +-0.194456 O b'+1:lemma:_' | ||
| 379 | +-0.198008 O b'lemma[:1]:I' | ||
| 380 | +-0.198858 Med b'lemma[:1]:c' | ||
| 381 | +-0.200600 Supp b'postag:CD' | ||
| 382 | +-0.200922 Supp b'lemma[:2]:10' | ||
| 383 | +-0.225778 O b'lemma:sodium' | ||
| 384 | +-0.227988 O b'lemma:150' | ||
| 385 | +-0.227988 O b'+1:lemma:mg/ml' | ||
| 386 | +-0.227988 O b'lemma[:2]:15' | ||
| 387 | +-0.230044 Air b'-1:lemma:grow' | ||
| 388 | +-0.230726 O b'lemma[:1]:L' | ||
| 389 | +-0.242707 OD b'+1:lemma:0.4' | ||
| 390 | +-0.247792 O b'lemma:aerobic' | ||
| 391 | +-0.250676 Gtype b'postag:CD' | ||
| 392 | +-0.251160 O b'lemma:37' | ||
| 393 | +-0.251160 O b'lemma[:2]:37' | ||
| 394 | +-0.252456 Supp b'lemma[:1]:o' | ||
| 395 | +-0.257318 Supp b'lemma:mm' | ||
| 396 | +-0.261677 O b'lemma:minimal' | ||
| 397 | +-0.264264 O b'-1:lemma:phosphate' | ||
| 398 | +-0.265979 O b'lemma:1m' | ||
| 399 | +-0.265979 O b'lemma[:2]:1m' | ||
| 400 | +-0.266597 O b'lemma:media' | ||
| 401 | +-0.267452 O b'lemma[:2]:an' | ||
| 402 | +-0.267991 Supp b'lemma:10' | ||
| 403 | +-0.278125 O b'lemma[:2]:0.' | ||
| 404 | +-0.280995 Supp b'lemma[:1]:a' | ||
| 405 | +-0.282672 Phase b'+1:postag:NN' | ||
| 406 | +-0.283800 O b'-1:lemma:iptg' | ||
| 407 | +-0.286359 O b'+1:lemma:1/100' | ||
| 408 | +-0.296570 O b'-1:postag:IN' | ||
| 409 | +-0.303339 O b'lemma:wt' | ||
| 410 | +-0.303339 O b'lemma[:2]:wt' | ||
| 411 | +-0.304954 O b'-1:lemma:n2' | ||
| 412 | +-0.305002 O b'+1:lemma:for' | ||
| 413 | +-0.313331 O b'+1:lemma:ph' | ||
| 414 | +-0.315827 O b'+1:lemma:rep2' | ||
| 415 | +-0.316914 Supp b'-1:postag:NNP' | ||
| 416 | +-0.317533 O b'+1:lemma:.' | ||
| 417 | +-0.317533 O b'+1:postag:.' | ||
| 418 | +-0.319317 O b'lemma[:2]:od' | ||
| 419 | +-0.321743 Supp b'+1:lemma:fructose' | ||
| 420 | +-0.325179 Gtype b'-1:lemma:-lrb-' | ||
| 421 | +-0.327448 Technique b'-1:lemma::' | ||
| 422 | +-0.332177 O b'+1:lemma:supplement' | ||
| 423 | +-0.340289 O b'lemma:of' | ||
| 424 | +-0.340289 O b'lemma[:2]:of' | ||
| 425 | +-0.346020 pH b'postag:NN' | ||
| 426 | +-0.348702 O b'-1:lemma:1m' | ||
| 427 | +-0.348772 O b'-1:lemma:of' | ||
| 428 | +-0.353402 O b'-1:postag:-LRB-' | ||
| 429 | +-0.353653 Gtype b'lemma[:1]:-' | ||
| 430 | +-0.370016 Air b'+1:postag:-LRB-' | ||
| 431 | +-0.378377 Med b'+1:postag:NN' | ||
| 432 | +-0.386701 O b'lemma:co2' | ||
| 433 | +-0.387052 O b'+1:lemma:-rrb-' | ||
| 434 | +-0.410253 O b'lemma:anaerobically' | ||
| 435 | +-0.410584 O b'-1:lemma:from' | ||
| 436 | +-0.411044 Med b'-1:postag:NN' | ||
| 437 | +-0.423352 Med b'+1:postag:IN' | ||
| 438 | +-0.425947 O b'lemma:glucose' | ||
| 439 | +-0.439413 O b'+1:postag:-RRB-' | ||
| 440 | +-0.439693 O b'+1:postag:IN' | ||
| 441 | +-0.445043 O b'lemma:c' | ||
| 442 | +-0.449206 Air b'-1:postag:JJ' | ||
| 443 | +-0.454193 Med b'symb' | ||
| 444 | +-0.455690 O b'lemma:2h' | ||
| 445 | +-0.455690 O b'-1:lemma:additional' | ||
| 446 | +-0.455690 O b'lemma[:2]:2h' | ||
| 447 | +-0.456326 OD b'hUpper' | ||
| 448 | +-0.456326 OD b'hLower' | ||
| 449 | +-0.457470 O b'-1:lemma:mm' | ||
| 450 | +-0.459860 O b'lemma[:1]:0' | ||
| 451 | +-0.476971 Anti b'+1:lemma:anti-fur' | ||
| 452 | +-0.481570 Air b'-1:lemma:or' | ||
| 453 | +-0.487911 Med b'-1:postag:IN' | ||
| 454 | +-0.497805 O b'-1:lemma:37' | ||
| 455 | +-0.503733 O b'postag:RB' | ||
| 456 | +-0.518906 Gtype b'-1:lemma:mg1655' | ||
| 457 | +-0.521608 O b'lemma[:2]:mg' | ||
| 458 | +-0.539310 Supp b'-1:lemma:-lrb-' | ||
| 459 | +-0.544818 Air b'-1:postag:VBN' | ||
| 460 | +-0.554971 Air b'+1:lemma:-lrb-' | ||
| 461 | +-0.564728 O b'+1:lemma:at' | ||
| 462 | +-0.575151 O b'lemma[:2]:gl' | ||
| 463 | +-0.586132 Temp b'hGreek' | ||
| 464 | +-0.613309 O b'lemma:methanol' | ||
| 465 | +-0.622499 Supp b'lemma[:1]:s' | ||
| 466 | +-0.648351 Supp b'-1:postag:-LRB-' | ||
| 467 | +-0.649606 Air b'symb' | ||
| 468 | +-0.665356 O b'-1:lemma:delta' | ||
| 469 | +-0.666424 Technique b'postag:NN' | ||
| 470 | +-0.679462 O b'lemma[:2]:ar' | ||
| 471 | +-0.680103 Med b'-1:postag:CD' | ||
| 472 | +-0.690689 O b'-1:lemma:\xe2\x88\x86' | ||
| 473 | +-0.694572 Supp b'symb' | ||
| 474 | +-0.699321 Supp b'+1:postag:VBN' | ||
| 475 | +-0.711427 Agit b'symb' | ||
| 476 | +-0.727728 Gtype b'lemma[:1]:c' | ||
| 477 | +-0.728934 O b'lemma:mid-log' | ||
| 478 | +-0.732994 Supp b'postag:JJ' | ||
| 479 | +-0.763056 O b'-1:lemma:final' | ||
| 480 | +-0.787433 Technique b'-1:postag::' | ||
| 481 | +-0.799920 Phase b'postag:JJ' | ||
| 482 | +-0.805670 O b'+1:postag:VBG' | ||
| 483 | +-0.811006 O b'-1:lemma:nsrr' | ||
| 484 | +-0.817629 Gtype b'+1:lemma:-rrb-' | ||
| 485 | +-0.826953 Phase b'hUpper' | ||
| 486 | +-0.826953 Phase b'hLower' | ||
| 487 | +-0.832803 O b'-1:lemma:30' | ||
| 488 | +-0.866445 O b'+1:lemma:2.0' | ||
| 489 | +-0.869353 O b'-1:lemma:dissolve' | ||
| 490 | +-0.869353 O b'+1:lemma:methanol' | ||
| 491 | +-0.879555 Phase b'-1:postag:JJ' | ||
| 492 | +-0.902450 Agit b'hUpper' | ||
| 493 | +-0.902450 Agit b'hLower' | ||
| 494 | +-0.908311 O b'-1:lemma:cra' | ||
| 495 | +-0.913033 O b'-1:lemma:IP' | ||
| 496 | +-0.913247 Temp b'postag:NN' | ||
| 497 | +-0.923496 O b'-1:lemma:co2' | ||
| 498 | +-0.928549 O b'+1:lemma:until' | ||
| 499 | +-0.945079 O b'+1:lemma:1m' | ||
| 500 | +-0.973593 O b'postag:VBP' | ||
| 501 | +-0.977346 O b'-1:lemma:rpob' | ||
| 502 | +-0.993918 O b'+1:lemma:g/l' | ||
| 503 | +-0.995081 O b'-1:lemma:ph' | ||
| 504 | +-1.012606 O b'lemma[:2]:ri' | ||
| 505 | +-1.015626 O b'-1:lemma:until' | ||
| 506 | +-1.019941 Gtype b'lemma[:1]:r' | ||
| 507 | +-1.020871 Anti b'postag:NNP' | ||
| 508 | +-1.021292 Gtype b'lemma[:1]:a' | ||
| 509 | +-1.043259 O b'+1:lemma:+' | ||
| 510 | +-1.064769 O b'-1:lemma:ml' | ||
| 511 | +-1.086182 O b'lemma[:2]:30' | ||
| 512 | +-1.110227 O b'lemma:soxs-8myc' | ||
| 513 | +-1.112350 O b'lemma:rifampicin' | ||
| 514 | +-1.121024 O b'+1:lemma:mm' | ||
| 515 | +-1.200742 O b'lemma:0.3' | ||
| 516 | +-1.229817 O b'lemma[:2]:me' | ||
| 517 | +-1.241013 O b'-1:postag::' | ||
| 518 | +-1.292670 Supp b'hGreek' | ||
| 519 | +-1.298761 O b'-1:lemma:1' | ||
| 520 | +-1.329722 Supp b'+1:lemma:-lrb-' | ||
| 521 | +-1.340009 O b'lemma[:2]:ae' | ||
| 522 | +-1.343861 Supp b'+1:postag:-LRB-' | ||
| 523 | +-1.407876 OD b'+1:postag:NN' | ||
| 524 | +-1.634875 O b'-1:lemma:fresh' | ||
| 525 | +-1.659704 O b'+1:lemma:1' | ||
| 526 | +-1.811326 Supp b'lemma[:1]:c' | ||
| 527 | +-1.853339 O b'-1:lemma:sample' | ||
| 528 | +-1.870273 Air b'postag:NN' | ||
| 529 | +-2.008997 Supp b'+1:lemma:,' | ||
| 530 | +-2.008997 Supp b'+1:postag:,' | ||
| 531 | +-2.030519 O b'+1:lemma:in' | ||
| 532 | +-2.074714 O b'-1:postag:VBG' | ||
| 533 | +-2.120965 Temp b'+1:postag:IN' | ||
| 534 | +-2.153912 O b'+1:lemma:2' | ||
| 535 | +-2.533264 O b'-1:lemma:vol' | ||
| 536 | +-2.654052 O b'-1:lemma:2' | ||
| 537 | +-2.901215 O b'lemma[:2]:fl' | ||
| 538 | +-4.156418 O b'-1:lemma:_' | ||
| 539 | +-4.945535 O b'-1:lemma::' | ||
| 540 | + |
CRF/reports/report_Run_3_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.11720815886647881, 'c2': 0.026187454028628224} | ||
| 5 | +best CV score:0.8623150078546968 | ||
| 6 | +model size: 0.12M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7729583914691408 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.690 0.816 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 0.579 1.000 0.733 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.877 0.753 0.810 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.735 0.806 0.769 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.811 0.752 0.773 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 5.534350 | ||
| 32 | +Anti -> Anti 5.202035 | ||
| 33 | +OD -> OD 5.162013 | ||
| 34 | +Agit -> Agit 5.101850 | ||
| 35 | +Supp -> Supp 4.862669 | ||
| 36 | +Med -> Med 4.742631 | ||
| 37 | +Gtype -> Gtype 4.690492 | ||
| 38 | +Gversion -> Gversion 4.253159 | ||
| 39 | +Phase -> Phase 4.193306 | ||
| 40 | +O -> O 4.143359 | ||
| 41 | +Air -> Air 4.079274 | ||
| 42 | +Technique -> Technique 3.737825 | ||
| 43 | +pH -> pH 2.701172 | ||
| 44 | +Substrain -> Gtype 1.413086 | ||
| 45 | +Gtype -> Supp 1.215131 | ||
| 46 | +O -> Gtype 1.183861 | ||
| 47 | +O -> Technique 1.124196 | ||
| 48 | +Gtype -> Air 0.906865 | ||
| 49 | +O -> Supp 0.894361 | ||
| 50 | +Air -> O 0.782291 | ||
| 51 | +Technique -> Air 0.697709 | ||
| 52 | +Gtype -> pH 0.616305 | ||
| 53 | +Temp -> O 0.413091 | ||
| 54 | +Supp -> O 0.344753 | ||
| 55 | +O -> Temp 0.252965 | ||
| 56 | +O -> Anti 0.243401 | ||
| 57 | +Med -> O 0.118001 | ||
| 58 | +O -> pH 0.044367 | ||
| 59 | +Strain -> O 0.008900 | ||
| 60 | +O -> Phase 0.000404 | ||
| 61 | +O -> Gversion 0.000174 | ||
| 62 | +O -> Agit -0.000001 | ||
| 63 | +OD -> O -0.000957 | ||
| 64 | +O -> OD -0.000978 | ||
| 65 | +Anti -> Med -0.003482 | ||
| 66 | +Phase -> O -0.006839 | ||
| 67 | +Technique -> O -0.130344 | ||
| 68 | +Agit -> O -0.145879 | ||
| 69 | +Air -> Supp -0.189667 | ||
| 70 | +O -> Med -0.260087 | ||
| 71 | +Phase -> Supp -0.337496 | ||
| 72 | +Gtype -> Anti -0.357408 | ||
| 73 | +Phase -> OD -0.410012 | ||
| 74 | +OD -> Air -0.412447 | ||
| 75 | +Air -> Temp -0.475634 | ||
| 76 | +Gtype -> Med -0.476794 | ||
| 77 | +Air -> Phase -0.503738 | ||
| 78 | +Gtype -> O -0.571166 | ||
| 79 | +Air -> Med -0.589897 | ||
| 80 | +O -> Air -0.677813 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Med -> Med 4.742631 | ||
| 85 | +Gtype -> Gtype 4.690492 | ||
| 86 | +Gversion -> Gversion 4.253159 | ||
| 87 | +Phase -> Phase 4.193306 | ||
| 88 | +O -> O 4.143359 | ||
| 89 | +Air -> Air 4.079274 | ||
| 90 | +Technique -> Technique 3.737825 | ||
| 91 | +pH -> pH 2.701172 | ||
| 92 | +Substrain -> Gtype 1.413086 | ||
| 93 | +Gtype -> Supp 1.215131 | ||
| 94 | +O -> Gtype 1.183861 | ||
| 95 | +O -> Technique 1.124196 | ||
| 96 | +Gtype -> Air 0.906865 | ||
| 97 | +O -> Supp 0.894361 | ||
| 98 | +Air -> O 0.782291 | ||
| 99 | +Technique -> Air 0.697709 | ||
| 100 | +Gtype -> pH 0.616305 | ||
| 101 | +Temp -> O 0.413091 | ||
| 102 | +Supp -> O 0.344753 | ||
| 103 | +O -> Temp 0.252965 | ||
| 104 | +O -> Anti 0.243401 | ||
| 105 | +Med -> O 0.118001 | ||
| 106 | +O -> pH 0.044367 | ||
| 107 | +Strain -> O 0.008900 | ||
| 108 | +O -> Phase 0.000404 | ||
| 109 | +O -> Gversion 0.000174 | ||
| 110 | +O -> Agit -0.000001 | ||
| 111 | +OD -> O -0.000957 | ||
| 112 | +O -> OD -0.000978 | ||
| 113 | +Anti -> Med -0.003482 | ||
| 114 | +Phase -> O -0.006839 | ||
| 115 | +Technique -> O -0.130344 | ||
| 116 | +Agit -> O -0.145879 | ||
| 117 | +Air -> Supp -0.189667 | ||
| 118 | +O -> Med -0.260087 | ||
| 119 | +Phase -> Supp -0.337496 | ||
| 120 | +Gtype -> Anti -0.357408 | ||
| 121 | +Phase -> OD -0.410012 | ||
| 122 | +OD -> Air -0.412447 | ||
| 123 | +Air -> Temp -0.475634 | ||
| 124 | +Gtype -> Med -0.476794 | ||
| 125 | +Air -> Phase -0.503738 | ||
| 126 | +Gtype -> O -0.571166 | ||
| 127 | +Air -> Med -0.589897 | ||
| 128 | +O -> Air -0.677813 | ||
| 129 | +Technique -> pH -0.697146 | ||
| 130 | +Supp -> Med -0.874957 | ||
| 131 | +Technique -> Gtype -0.966031 | ||
| 132 | +Substrain -> O -1.152021 | ||
| 133 | +Med -> Supp -1.883468 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +5.346056 Air b'word:Aerobic' | ||
| 138 | +4.814989 O b'lemma:_' | ||
| 139 | +4.814989 O b'word:_' | ||
| 140 | +4.683626 Air b'lemma:anaerobic' | ||
| 141 | +4.137422 O b'word:Cra' | ||
| 142 | +3.717067 Air b'postag:RB' | ||
| 143 | +3.648734 Technique b'word:ChIP-Seq' | ||
| 144 | +3.591761 O b'postag:IN' | ||
| 145 | +3.527991 Gtype b'lemma:wt' | ||
| 146 | +3.502005 O b'-1:lemma:ChIP-exo' | ||
| 147 | +3.404088 Gtype b'lemma:wild-type' | ||
| 148 | +3.374603 Air b'word:Anaerobic' | ||
| 149 | +3.313814 Technique b'lemma:ChIP-exo' | ||
| 150 | +3.289286 Supp b'lemma:nh4cl' | ||
| 151 | +3.261253 O b'postag::' | ||
| 152 | +3.210614 Supp b'lemma:Iron' | ||
| 153 | +3.210614 Supp b'word:Iron' | ||
| 154 | +3.210614 Supp b'+1:word:Deficient' | ||
| 155 | +3.205283 Technique b'word:ChIP-exo' | ||
| 156 | +3.177621 Supp b'lemma:pq' | ||
| 157 | +3.177621 Supp b'word:PQ' | ||
| 158 | +3.149226 Technique b'word:ChIPSeq' | ||
| 159 | +3.063798 O b'lemma:2' | ||
| 160 | +3.063798 O b'word:2' | ||
| 161 | +3.039767 Supp b'-1:word:Cra' | ||
| 162 | +2.926997 Strain b'+1:lemma:substr' | ||
| 163 | +2.926997 Strain b'+1:word:substr' | ||
| 164 | +2.924815 Gtype b'lemma:type' | ||
| 165 | +2.924815 Gtype b'word:type' | ||
| 166 | +2.895571 Med b'lemma:MOPS' | ||
| 167 | +2.895571 Med b'word:MOPS' | ||
| 168 | +2.886364 Phase b'lemma:mid-log' | ||
| 169 | +2.886364 Phase b'word:mid-log' | ||
| 170 | +2.877854 O b'lemma:-' | ||
| 171 | +2.877854 O b'word:-' | ||
| 172 | +2.870915 Technique b'lemma:rna-seq' | ||
| 173 | +2.819786 Gtype b'word:WT' | ||
| 174 | +2.808619 O b'lemma:rpob' | ||
| 175 | +2.808619 O b'word:RpoB' | ||
| 176 | +2.775553 O b'lemma:1' | ||
| 177 | +2.775553 O b'word:1' | ||
| 178 | +2.716320 Gversion b'lemma:asm584v2' | ||
| 179 | +2.716320 Gversion b'word:ASM584v2' | ||
| 180 | +2.606208 O b'-1:lemma:tag' | ||
| 181 | +2.586384 O b'lemma:Custom' | ||
| 182 | +2.586384 O b'word:Custom' | ||
| 183 | +2.582328 O b'lemma:.' | ||
| 184 | +2.582328 O b'postag:.' | ||
| 185 | +2.582328 O b'word:.' | ||
| 186 | +2.554026 Gtype b'lemma:\xce\xb4cra' | ||
| 187 | +2.550784 Gtype b'word:\xce\x94cra' | ||
| 188 | +2.548130 O b'lemma:chip' | ||
| 189 | +2.540102 Phase b'lemma:exponential' | ||
| 190 | +2.540102 Phase b'word:exponential' | ||
| 191 | +2.540102 Phase b'lemma:stationary' | ||
| 192 | +2.540102 Phase b'word:stationary' | ||
| 193 | +2.534852 O b'lemma:3' | ||
| 194 | +2.534852 O b'word:3' | ||
| 195 | +2.483583 Supp b'+1:lemma:\xc2\xb5m' | ||
| 196 | +2.483583 Supp b'+1:word:\xc2\xb5M' | ||
| 197 | +2.428266 Gtype b'+1:lemma:type' | ||
| 198 | +2.428266 Gtype b'+1:word:type' | ||
| 199 | +2.423833 Technique b'lemma:chipseq' | ||
| 200 | +2.335552 Supp b'lemma:glucose' | ||
| 201 | +2.335552 Supp b'word:glucose' | ||
| 202 | +2.303572 O b'lemma:b' | ||
| 203 | +2.303572 O b'word:B' | ||
| 204 | +2.275983 Supp b'lemma:arginine' | ||
| 205 | +2.258897 O b'postag:CC' | ||
| 206 | +2.258702 Supp b'lemma:nacl' | ||
| 207 | +2.258702 Supp b'word:NaCl' | ||
| 208 | +2.248340 O b'lemma:a' | ||
| 209 | +2.240067 O b'-1:word:tag' | ||
| 210 | +2.219665 O b'+1:lemma:pq' | ||
| 211 | +2.219665 O b'+1:word:PQ' | ||
| 212 | +2.201128 O b'lemma:ompr' | ||
| 213 | +2.201128 O b'word:OmpR' | ||
| 214 | +2.196031 Supp b'lemma:rifampicin' | ||
| 215 | +2.196031 Supp b'word:rifampicin' | ||
| 216 | +2.166584 Substrain b'lemma:mg1655' | ||
| 217 | +2.166584 Substrain b'word:MG1655' | ||
| 218 | +2.150321 Gtype b'lemma:flag-tag' | ||
| 219 | +2.150321 Gtype b'-1:lemma:c-terminal' | ||
| 220 | +2.150321 Gtype b'word:Flag-tag' | ||
| 221 | +2.150321 Gtype b'-1:word:C-terminal' | ||
| 222 | +2.144846 Gtype b'-1:postag:VBG' | ||
| 223 | +2.133181 pH b'+1:postag:CD' | ||
| 224 | +2.127721 O b'word:A' | ||
| 225 | +2.115852 O b'-1:word:Aerobic' | ||
| 226 | +2.096172 Gtype b'lemma:delta-fnr' | ||
| 227 | +2.096172 Gtype b'word:delta-fnr' | ||
| 228 | +2.095669 Gversion b'lemma:nc' | ||
| 229 | +2.095669 Gversion b'word:NC' | ||
| 230 | +2.056559 Technique b'lemma:rnaseq' | ||
| 231 | +2.056559 Technique b'word:RNASeq' | ||
| 232 | +2.056377 Air b'word:anaerobic' | ||
| 233 | +2.035701 O b'+1:postag:RB' | ||
| 234 | +2.004258 Supp b'lemma:acetate' | ||
| 235 | +2.004258 Supp b'word:acetate' | ||
| 236 | +1.965988 O b'+1:postag:NNP' | ||
| 237 | +1.964752 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 238 | +1.964752 Gtype b'-1:word:\xe2\x88\x86' | ||
| 239 | +1.910185 Gtype b'lemma:\xe2\x88\x86' | ||
| 240 | +1.910185 Gtype b'word:\xe2\x88\x86' | ||
| 241 | +1.904605 Strain b'lemma:k-12' | ||
| 242 | +1.904605 Strain b'word:K-12' | ||
| 243 | +1.891315 Gtype b'postag:-LRB-' | ||
| 244 | +1.887141 Air b'-1:lemma:ChIP-Seq' | ||
| 245 | +1.887141 Air b'-1:word:ChIP-Seq' | ||
| 246 | +1.880957 Agit b'+1:lemma:rpm' | ||
| 247 | +1.880957 Agit b'+1:word:rpm' | ||
| 248 | +1.877174 O b'postag:VBN' | ||
| 249 | +1.877047 Supp b'-1:lemma:with' | ||
| 250 | +1.877047 Supp b'-1:word:with' | ||
| 251 | +1.865462 Gversion b'-1:lemma:nc' | ||
| 252 | +1.865462 Gversion b'-1:word:NC' | ||
| 253 | +1.861443 Gtype b'lemma:arca8myc' | ||
| 254 | +1.861443 Gtype b'word:ArcA8myc' | ||
| 255 | +1.839749 O b'+1:word:were' | ||
| 256 | +1.838491 O b'+1:word:ChIP-Seq' | ||
| 257 | +1.824231 O b'lemma:rep1' | ||
| 258 | +1.824231 O b'word:rep1' | ||
| 259 | +1.824111 Supp b'lemma:nitrate' | ||
| 260 | +1.824111 Supp b'word:nitrate' | ||
| 261 | +1.816106 O b'-1:lemma:lb' | ||
| 262 | +1.816106 O b'-1:word:LB' | ||
| 263 | +1.809240 Technique b'-1:lemma:chip-exo' | ||
| 264 | +1.802237 Gtype b'word:cra' | ||
| 265 | +1.797362 Agit b'lemma:rpm' | ||
| 266 | +1.797362 Agit b'word:rpm' | ||
| 267 | +1.796466 Anti b'lemma:seqa' | ||
| 268 | +1.796466 Anti b'word:SeqA' | ||
| 269 | +1.788369 Supp b'-1:lemma:Cra' | ||
| 270 | +1.787306 O b'lemma:rep3' | ||
| 271 | +1.787306 O b'word:rep3' | ||
| 272 | +1.759779 O b'isLower' | ||
| 273 | +1.740278 O b'lemma:Cra' | ||
| 274 | +1.724562 O b'lemma:with' | ||
| 275 | +1.724562 O b'word:with' | ||
| 276 | +1.722881 Med b'+1:lemma:0.4' | ||
| 277 | +1.722881 Med b'+1:word:0.4' | ||
| 278 | +1.704798 O b'lemma:at' | ||
| 279 | +1.698923 Gversion b'lemma:chip-seq' | ||
| 280 | +1.683530 Gtype b'lemma:pk4854' | ||
| 281 | +1.683530 Gtype b'word:PK4854' | ||
| 282 | +1.671411 Air b'lemma:aerobic' | ||
| 283 | +1.666004 Vess b'lemma:flask' | ||
| 284 | +1.666004 Vess b'-1:lemma:warm' | ||
| 285 | +1.666004 Vess b'word:flask' | ||
| 286 | +1.666004 Vess b'-1:word:warmed' | ||
| 287 | +1.665360 Gtype b'postag:NN' | ||
| 288 | +1.664894 Supp b'lemma:no3' | ||
| 289 | +1.664894 Supp b'word:NO3' | ||
| 290 | +1.657234 Anti b'lemma:none' | ||
| 291 | +1.657234 Anti b'word:none' | ||
| 292 | +1.654372 O b'lemma:culture' | ||
| 293 | +1.643899 Supp b'-1:lemma:+' | ||
| 294 | +1.643899 Supp b'-1:word:+' | ||
| 295 | +1.641571 Air b'-1:postag::' | ||
| 296 | +1.637039 Supp b'-1:lemma:vol' | ||
| 297 | +1.637039 Supp b'-1:word:vol' | ||
| 298 | +1.618213 Supp b'lemma:dpd' | ||
| 299 | +1.618213 Supp b'word:DPD' | ||
| 300 | +1.611503 O b'-1:lemma:glucose' | ||
| 301 | +1.611503 O b'-1:word:glucose' | ||
| 302 | +1.609875 Anti b'lemma:\xcf\x8332' | ||
| 303 | +1.609875 Anti b'word:\xcf\x8332' | ||
| 304 | +1.607928 Gtype b'lemma:\xce\xb4soxr' | ||
| 305 | +1.607928 Gtype b'word:\xce\x94soxR' | ||
| 306 | +1.605256 Med b'-1:lemma:ml' | ||
| 307 | +1.605256 Med b'-1:word:ml' | ||
| 308 | +1.602162 Technique b'word:RNA-Seq' | ||
| 309 | +1.589352 Air b'lemma:Aerobic' | ||
| 310 | +1.584726 Gversion b'word:ChIP-Seq' | ||
| 311 | +1.580172 Air b'lemma:anaeroibc' | ||
| 312 | +1.580172 Air b'word:Anaeroibc' | ||
| 313 | +1.571537 O b'lemma:\xcf\x8332' | ||
| 314 | +1.571537 O b'word:\xcf\x8332' | ||
| 315 | +1.571064 Supp b'lemma:Leu' | ||
| 316 | +1.571064 Supp b'word:Leu' | ||
| 317 | +1.570481 Gtype b'lemma:\xce\xb4fur' | ||
| 318 | +1.570481 Gtype b'word:\xce\x94fur' | ||
| 319 | +1.563108 O b'-1:lemma:0.3' | ||
| 320 | +1.563108 O b'-1:word:0.3' | ||
| 321 | +1.559415 Vess b'-1:postag:VBN' | ||
| 322 | +1.558118 O b'lemma::' | ||
| 323 | +1.558118 O b'word::' | ||
| 324 | +1.538469 Med b'lemma:broth' | ||
| 325 | +1.538469 Med b'-1:lemma:L' | ||
| 326 | +1.538469 Med b'word:broth' | ||
| 327 | +1.538469 Med b'-1:word:L' | ||
| 328 | +1.521808 Gtype b'+1:lemma:with' | ||
| 329 | +1.521808 Gtype b'+1:word:with' | ||
| 330 | +1.520140 Air b'lemma:anaerobically' | ||
| 331 | +1.520140 Air b'word:anaerobically' | ||
| 332 | +1.513230 Supp b'lemma:Fe' | ||
| 333 | +1.513230 Supp b'word:Fe' | ||
| 334 | +1.508184 O b'-1:lemma:wt' | ||
| 335 | +1.482348 Gtype b'word:Wild-type' | ||
| 336 | +1.478153 O b'lemma:harbor' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.165864 O b'word:glucose' | ||
| 341 | +-0.166177 Supp b'lemma:10' | ||
| 342 | +-0.166177 Supp b'word:10' | ||
| 343 | +-0.167098 Air b'isLower' | ||
| 344 | +-0.167761 O b'-1:word:from' | ||
| 345 | +-0.171430 O b'-1:lemma:delta' | ||
| 346 | +-0.171430 O b'-1:word:delta' | ||
| 347 | +-0.173899 O b'+1:word:was' | ||
| 348 | +-0.175064 O b'-1:lemma:final' | ||
| 349 | +-0.175064 O b'-1:word:final' | ||
| 350 | +-0.175415 O b'+1:lemma:for' | ||
| 351 | +-0.175588 O b'-1:lemma:sodium' | ||
| 352 | +-0.175588 O b'-1:word:Sodium' | ||
| 353 | +-0.176424 O b'-1:lemma:m' | ||
| 354 | +-0.176424 O b'-1:word:M' | ||
| 355 | +-0.177631 O b'-1:postag:DT' | ||
| 356 | +-0.184729 Supp b'+1:lemma:rifampicin' | ||
| 357 | +-0.184729 Supp b'+1:word:rifampicin' | ||
| 358 | +-0.185903 O b'lemma:fructose' | ||
| 359 | +-0.185903 O b'word:fructose' | ||
| 360 | +-0.186123 Air b'-1:postag:VBN' | ||
| 361 | +-0.189612 O b'word:cells' | ||
| 362 | +-0.196713 O b'-1:lemma:1m' | ||
| 363 | +-0.196713 O b'-1:word:1M' | ||
| 364 | +-0.207755 O b'-1:lemma:cra' | ||
| 365 | +-0.208558 O b'+1:word:C' | ||
| 366 | +-0.208657 Med b'+1:postag:NN' | ||
| 367 | +-0.233153 O b'word:ChIP-exo' | ||
| 368 | +-0.245194 Supp b'+1:lemma:dpd' | ||
| 369 | +-0.245194 Supp b'+1:word:DPD' | ||
| 370 | +-0.252316 O b'-1:word:the' | ||
| 371 | +-0.254853 O b'+1:lemma:.' | ||
| 372 | +-0.254853 O b'+1:postag:.' | ||
| 373 | +-0.254853 O b'+1:word:.' | ||
| 374 | +-0.256451 O b'+1:lemma:until' | ||
| 375 | +-0.256451 O b'+1:word:until' | ||
| 376 | +-0.258020 O b'-1:postag:JJ' | ||
| 377 | +-0.259972 O b'lemma:20' | ||
| 378 | +-0.259972 O b'word:20' | ||
| 379 | +-0.260590 Med b'+1:postag:IN' | ||
| 380 | +-0.262788 O b'-1:lemma:the' | ||
| 381 | +-0.270489 Phase b'+1:postag:NN' | ||
| 382 | +-0.272030 Gtype b'+1:postag:CD' | ||
| 383 | +-0.288673 pH b'postag:NN' | ||
| 384 | +-0.294614 O b'+1:lemma:supplement' | ||
| 385 | +-0.294614 O b'+1:word:supplemented' | ||
| 386 | +-0.295450 Technique b'-1:postag::' | ||
| 387 | +-0.298173 OD b'isNumber' | ||
| 388 | +-0.300823 O b'+1:postag:-LRB-' | ||
| 389 | +-0.316781 O b'lemma:minimal' | ||
| 390 | +-0.316781 O b'word:minimal' | ||
| 391 | +-0.331660 O b'-1:postag:-LRB-' | ||
| 392 | +-0.339761 O b'-1:lemma:mm' | ||
| 393 | +-0.339761 O b'-1:word:mM' | ||
| 394 | +-0.342651 O b'-1:lemma:n2' | ||
| 395 | +-0.342651 O b'-1:word:N2' | ||
| 396 | +-0.348976 O b'-1:lemma:37' | ||
| 397 | +-0.348976 O b'-1:word:37' | ||
| 398 | +-0.350719 pH b'isUpper' | ||
| 399 | +-0.355836 O b'lemma:medium' | ||
| 400 | +-0.355836 O b'word:medium' | ||
| 401 | +-0.358797 O b'-1:lemma:co2' | ||
| 402 | +-0.358797 O b'-1:word:CO2' | ||
| 403 | +-0.360206 O b'lemma:37' | ||
| 404 | +-0.360206 O b'word:37' | ||
| 405 | +-0.363212 Anti b'isUpper' | ||
| 406 | +-0.363229 O b'lemma:aerobically' | ||
| 407 | +-0.363229 O b'word:aerobically' | ||
| 408 | +-0.387107 O b'-1:lemma:ph' | ||
| 409 | +-0.387107 O b'-1:word:pH' | ||
| 410 | +-0.388937 Air b'-1:postag:CC' | ||
| 411 | +-0.403999 Supp b'+1:lemma:acetate' | ||
| 412 | +-0.403999 Supp b'+1:word:acetate' | ||
| 413 | +-0.405755 O b'+1:postag:IN' | ||
| 414 | +-0.405984 Supp b'-1:lemma:-lrb-' | ||
| 415 | +-0.405984 Supp b'-1:word:-LRB-' | ||
| 416 | +-0.407871 O b'lemma:\xce\xb4fur' | ||
| 417 | +-0.407871 O b'word:\xce\x94fur' | ||
| 418 | +-0.410756 O b'lemma:mid-log' | ||
| 419 | +-0.410756 O b'word:mid-log' | ||
| 420 | +-0.413451 Gtype b'+1:lemma:-lrb-' | ||
| 421 | +-0.413451 Gtype b'+1:word:-LRB-' | ||
| 422 | +-0.415001 O b'lemma:nitrate' | ||
| 423 | +-0.415001 O b'word:nitrate' | ||
| 424 | +-0.418409 Gtype b'-1:postag:CD' | ||
| 425 | +-0.421257 Supp b'+1:lemma:fructose' | ||
| 426 | +-0.421257 Supp b'+1:word:fructose' | ||
| 427 | +-0.422476 O b'+1:postag:-RRB-' | ||
| 428 | +-0.439758 Supp b'+1:lemma:nacl' | ||
| 429 | +-0.439758 Supp b'+1:word:NaCl' | ||
| 430 | +-0.439850 Supp b'-1:postag:-LRB-' | ||
| 431 | +-0.441680 O b'+1:lemma:2.0' | ||
| 432 | +-0.441680 O b'+1:word:2.0' | ||
| 433 | +-0.451586 O b'-1:lemma:until' | ||
| 434 | +-0.451586 O b'-1:word:until' | ||
| 435 | +-0.452607 Air b'-1:lemma:or' | ||
| 436 | +-0.452607 Air b'-1:word:or' | ||
| 437 | +-0.458248 Med b'-1:postag:NN' | ||
| 438 | +-0.459831 O b'+1:lemma:+' | ||
| 439 | +-0.459831 O b'+1:word:+' | ||
| 440 | +-0.460799 O b'-1:lemma:dissolve' | ||
| 441 | +-0.460799 O b'+1:lemma:methanol' | ||
| 442 | +-0.460799 O b'-1:word:dissolved' | ||
| 443 | +-0.460799 O b'+1:word:methanol' | ||
| 444 | +-0.475659 O b'-1:lemma:rpob' | ||
| 445 | +-0.475659 O b'-1:word:RpoB' | ||
| 446 | +-0.489439 O b'-1:lemma:chip-exo' | ||
| 447 | +-0.516959 O b'lemma:methanol' | ||
| 448 | +-0.516959 O b'word:methanol' | ||
| 449 | +-0.519060 O b'lemma:0.3' | ||
| 450 | +-0.519060 O b'word:0.3' | ||
| 451 | +-0.521823 O b'-1:lemma:\xe2\x88\x86' | ||
| 452 | +-0.521823 O b'-1:word:\xe2\x88\x86' | ||
| 453 | +-0.532528 Supp b'postag:CC' | ||
| 454 | +-0.555308 O b'+1:lemma:at' | ||
| 455 | +-0.555308 O b'+1:word:at' | ||
| 456 | +-0.568935 O b'+1:word:ChIP-exo' | ||
| 457 | +-0.587243 pH b'isLower' | ||
| 458 | +-0.598998 O b'lemma:anaerobically' | ||
| 459 | +-0.598998 O b'word:anaerobically' | ||
| 460 | +-0.601761 O b'lemma:30' | ||
| 461 | +-0.601761 O b'word:30' | ||
| 462 | +-0.604543 Phase b'isUpper' | ||
| 463 | +-0.609562 O b'+1:lemma:1m' | ||
| 464 | +-0.609562 O b'+1:word:1M' | ||
| 465 | +-0.624149 O b'+1:lemma:g/l' | ||
| 466 | +-0.624149 O b'+1:word:g/L' | ||
| 467 | +-0.632418 O b'-1:lemma:30' | ||
| 468 | +-0.632418 O b'-1:word:30' | ||
| 469 | +-0.633125 O b'lemma:2h' | ||
| 470 | +-0.633125 O b'-1:lemma:additional' | ||
| 471 | +-0.633125 O b'word:2h' | ||
| 472 | +-0.633125 O b'-1:word:additional' | ||
| 473 | +-0.634616 O b'+1:lemma:mm' | ||
| 474 | +-0.634616 O b'+1:word:mM' | ||
| 475 | +-0.640250 Air b'+1:postag:JJ' | ||
| 476 | +-0.653940 O b'lemma:of' | ||
| 477 | +-0.653940 O b'word:of' | ||
| 478 | +-0.659372 O b'-1:postag:IN' | ||
| 479 | +-0.692700 O b'-1:lemma:nsrr' | ||
| 480 | +-0.692700 O b'-1:word:NsrR' | ||
| 481 | +-0.702058 O b'lemma:wt' | ||
| 482 | +-0.715997 Supp b'-1:postag:NNP' | ||
| 483 | +-0.732594 O b'-1:lemma:ml' | ||
| 484 | +-0.732594 O b'-1:word:ml' | ||
| 485 | +-0.739666 Supp b'+1:postag:VBN' | ||
| 486 | +-0.740410 O b'lemma:nitrogen' | ||
| 487 | +-0.740410 O b'word:nitrogen' | ||
| 488 | +-0.774393 O b'-1:lemma:1' | ||
| 489 | +-0.774393 O b'-1:word:1' | ||
| 490 | +-0.775963 Med b'-1:postag:IN' | ||
| 491 | +-0.800588 O b'-1:lemma:2' | ||
| 492 | +-0.800588 O b'-1:word:2' | ||
| 493 | +-0.803460 O b'lemma:media' | ||
| 494 | +-0.803460 O b'word:media' | ||
| 495 | +-0.804540 O b'-1:postag::' | ||
| 496 | +-0.811529 O b'-1:lemma:IP' | ||
| 497 | +-0.811529 O b'-1:word:IP' | ||
| 498 | +-0.838460 Air b'postag:NN' | ||
| 499 | +-0.839107 O b'postag:RB' | ||
| 500 | +-0.861540 O b'-1:lemma:fresh' | ||
| 501 | +-0.861540 O b'-1:word:fresh' | ||
| 502 | +-0.888556 O b'+1:lemma:1' | ||
| 503 | +-0.888556 O b'+1:word:1' | ||
| 504 | +-0.893910 Temp b'postag:NN' | ||
| 505 | +-0.912818 O b'-1:lemma:sample' | ||
| 506 | +-0.918416 O b'+1:postag:VBG' | ||
| 507 | +-0.932692 Gtype b'isUpper' | ||
| 508 | +-0.946508 Agit b'isUpper' | ||
| 509 | +-0.991033 Gtype b'isLower' | ||
| 510 | +-1.014529 O b'+1:lemma:in' | ||
| 511 | +-1.014529 O b'+1:word:in' | ||
| 512 | +-1.018421 Technique b'isNumber' | ||
| 513 | +-1.123268 O b'lemma:rifampicin' | ||
| 514 | +-1.123268 O b'word:rifampicin' | ||
| 515 | +-1.152939 Technique b'isLower' | ||
| 516 | +-1.187285 Supp b'+1:lemma:-lrb-' | ||
| 517 | +-1.187285 Supp b'+1:word:-LRB-' | ||
| 518 | +-1.223419 Supp b'+1:postag:-LRB-' | ||
| 519 | +-1.268612 O b'postag:VBP' | ||
| 520 | +-1.279408 O b'+1:lemma:2' | ||
| 521 | +-1.279408 O b'+1:word:2' | ||
| 522 | +-1.359325 Gtype b'isNumber' | ||
| 523 | +-1.384781 Supp b'+1:lemma:,' | ||
| 524 | +-1.384781 Supp b'+1:postag:,' | ||
| 525 | +-1.384781 Supp b'+1:word:,' | ||
| 526 | +-1.428559 O b'-1:lemma:vol' | ||
| 527 | +-1.428559 O b'-1:word:vol' | ||
| 528 | +-1.432202 Gversion b'isLower' | ||
| 529 | +-1.530158 Supp b'postag:JJ' | ||
| 530 | +-1.621285 OD b'+1:postag:NN' | ||
| 531 | +-1.631452 Phase b'postag:JJ' | ||
| 532 | +-1.756839 Temp b'+1:postag:IN' | ||
| 533 | +-1.806660 Anti b'postag:NNP' | ||
| 534 | +-1.859199 Phase b'-1:postag:JJ' | ||
| 535 | +-1.984210 O b'-1:lemma:_' | ||
| 536 | +-1.984210 O b'-1:word:_' | ||
| 537 | +-2.026219 O b'-1:postag:VBG' | ||
| 538 | +-2.285116 O b'-1:lemma::' | ||
| 539 | +-2.285116 O b'-1:word::' | ||
| 540 | + |
CRF/reports/report_Run_3_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.025397838188738985, 'c2': 0.010943674737961755} | ||
| 5 | +best CV score:0.866151069813274 | ||
| 6 | +model size: 0.15M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7919663066130411 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.724 0.840 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.886 0.824 0.854 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.745 0.806 0.774 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.826 0.769 0.792 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 5.760887 | ||
| 32 | +Med -> Med 5.678477 | ||
| 33 | +Anti -> Anti 5.326115 | ||
| 34 | +Agit -> Agit 5.286360 | ||
| 35 | +Supp -> Supp 5.206097 | ||
| 36 | +Gtype -> Gtype 5.054366 | ||
| 37 | +OD -> OD 4.762019 | ||
| 38 | +O -> O 4.584226 | ||
| 39 | +Gversion -> Gversion 4.568451 | ||
| 40 | +Phase -> Phase 4.187286 | ||
| 41 | +Technique -> Technique 4.138629 | ||
| 42 | +Air -> Air 4.000035 | ||
| 43 | +pH -> pH 2.729965 | ||
| 44 | +Substrain -> Gtype 1.627917 | ||
| 45 | +O -> Technique 1.124864 | ||
| 46 | +O -> Gtype 0.872372 | ||
| 47 | +Technique -> Air 0.731367 | ||
| 48 | +Gtype -> Supp 0.637844 | ||
| 49 | +Gtype -> Air 0.628544 | ||
| 50 | +Gtype -> pH 0.590887 | ||
| 51 | +Temp -> O 0.369557 | ||
| 52 | +Air -> O 0.111207 | ||
| 53 | +O -> Temp 0.069854 | ||
| 54 | +Strain -> O 0.060323 | ||
| 55 | +O -> pH 0.012969 | ||
| 56 | +O -> Gversion 0.008119 | ||
| 57 | +O -> Anti 0.005882 | ||
| 58 | +O -> Strain -0.000031 | ||
| 59 | +O -> Substrain -0.000043 | ||
| 60 | +Supp -> Gversion -0.000207 | ||
| 61 | +Vess -> O -0.012750 | ||
| 62 | +Phase -> Anti -0.021251 | ||
| 63 | +Supp -> OD -0.026454 | ||
| 64 | +Gtype -> OD -0.036196 | ||
| 65 | +O -> Phase -0.036759 | ||
| 66 | +pH -> O -0.045025 | ||
| 67 | +Phase -> Air -0.050032 | ||
| 68 | +Phase -> Technique -0.056805 | ||
| 69 | +Gtype -> Technique -0.057557 | ||
| 70 | +Supp -> Phase -0.061193 | ||
| 71 | +Med -> O -0.061484 | ||
| 72 | +O -> Supp -0.071678 | ||
| 73 | +Agit -> O -0.081937 | ||
| 74 | +Anti -> Gtype -0.086639 | ||
| 75 | +Anti -> Phase -0.088763 | ||
| 76 | +OD -> Med -0.098634 | ||
| 77 | +Supp -> pH -0.101552 | ||
| 78 | +Supp -> O -0.105915 | ||
| 79 | +Gtype -> Phase -0.115027 | ||
| 80 | +pH -> Supp -0.117891 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +O -> Supp -0.071678 | ||
| 85 | +Agit -> O -0.081937 | ||
| 86 | +Anti -> Gtype -0.086639 | ||
| 87 | +Anti -> Phase -0.088763 | ||
| 88 | +OD -> Med -0.098634 | ||
| 89 | +Supp -> pH -0.101552 | ||
| 90 | +Supp -> O -0.105915 | ||
| 91 | +Gtype -> Phase -0.115027 | ||
| 92 | +pH -> Supp -0.117891 | ||
| 93 | +Gtype -> Gversion -0.121895 | ||
| 94 | +Anti -> O -0.201256 | ||
| 95 | +Technique -> Supp -0.229809 | ||
| 96 | +Gversion -> O -0.230521 | ||
| 97 | +Med -> Air -0.267137 | ||
| 98 | +O -> Agit -0.281266 | ||
| 99 | +Gversion -> Supp -0.287197 | ||
| 100 | +Supp -> Gtype -0.291702 | ||
| 101 | +Anti -> Supp -0.353269 | ||
| 102 | +Technique -> OD -0.362376 | ||
| 103 | +Technique -> O -0.381273 | ||
| 104 | +Supp -> Anti -0.420491 | ||
| 105 | +Anti -> Temp -0.442117 | ||
| 106 | +Air -> OD -0.473267 | ||
| 107 | +Temp -> Air -0.506469 | ||
| 108 | +O -> OD -0.516111 | ||
| 109 | +Air -> Agit -0.518285 | ||
| 110 | +OD -> Supp -0.549851 | ||
| 111 | +OD -> O -0.692796 | ||
| 112 | +Gtype -> O -0.708611 | ||
| 113 | +Supp -> Air -0.710521 | ||
| 114 | +Gtype -> Anti -0.742633 | ||
| 115 | +Gtype -> Med -0.747450 | ||
| 116 | +Phase -> Med -0.781570 | ||
| 117 | +OD -> Air -0.812786 | ||
| 118 | +O -> Med -0.889466 | ||
| 119 | +Agit -> Air -0.930785 | ||
| 120 | +Phase -> OD -0.941459 | ||
| 121 | +Technique -> pH -1.069982 | ||
| 122 | +Phase -> Supp -1.109907 | ||
| 123 | +Air -> Med -1.179927 | ||
| 124 | +Air -> Phase -1.299860 | ||
| 125 | +Substrain -> O -1.308161 | ||
| 126 | +Temp -> Med -1.308517 | ||
| 127 | +Phase -> O -1.327800 | ||
| 128 | +Air -> Temp -1.331056 | ||
| 129 | +Air -> Supp -1.346362 | ||
| 130 | +O -> Air -1.390028 | ||
| 131 | +Technique -> Gtype -1.424338 | ||
| 132 | +Supp -> Med -1.619256 | ||
| 133 | +Med -> Supp -2.800528 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +5.583316 Air b'word:Aerobic' | ||
| 138 | +5.568452 O b'lemma:_' | ||
| 139 | +5.568452 O b'word:_' | ||
| 140 | +5.408845 O b'word:Cra' | ||
| 141 | +4.999592 Air b'lemma:anaerobic' | ||
| 142 | +4.519603 Supp b'-1:word:Cra' | ||
| 143 | +4.085441 Technique b'word:ChIP-Seq' | ||
| 144 | +4.045495 Gtype b'lemma:wt' | ||
| 145 | +4.028624 Phase b'lemma:exponential' | ||
| 146 | +4.028624 Phase b'word:exponential' | ||
| 147 | +4.028624 Phase b'lemma:stationary' | ||
| 148 | +4.028624 Phase b'word:stationary' | ||
| 149 | +3.845256 Gtype b'lemma:wild-type' | ||
| 150 | +3.774295 Supp b'lemma:Iron' | ||
| 151 | +3.774295 Supp b'word:Iron' | ||
| 152 | +3.774295 Supp b'+1:word:Deficient' | ||
| 153 | +3.734294 O b'lemma:-' | ||
| 154 | +3.734294 O b'word:-' | ||
| 155 | +3.706486 Supp b'lemma:nh4cl' | ||
| 156 | +3.556725 O b'+1:postag:RB' | ||
| 157 | +3.535557 Phase b'lemma:mid-log' | ||
| 158 | +3.535557 Phase b'word:mid-log' | ||
| 159 | +3.518403 Air b'word:Anaerobic' | ||
| 160 | +3.506387 Air b'postag:RB' | ||
| 161 | +3.497482 O b'-1:lemma:ChIP-exo' | ||
| 162 | +3.467179 Med b'lemma:MOPS' | ||
| 163 | +3.467179 Med b'word:MOPS' | ||
| 164 | +3.455080 Gtype b'word:WT' | ||
| 165 | +3.454991 Technique b'lemma:ChIP-exo' | ||
| 166 | +3.420923 Gtype b'lemma:\xce\xb4cra' | ||
| 167 | +3.417588 Gtype b'word:\xce\x94cra' | ||
| 168 | +3.314327 Supp b'lemma:pq' | ||
| 169 | +3.314327 Supp b'word:PQ' | ||
| 170 | +3.305655 Technique b'word:ChIPSeq' | ||
| 171 | +3.233996 O b'lemma:rpob' | ||
| 172 | +3.233996 O b'word:RpoB' | ||
| 173 | +3.230643 O b'-1:word:tag' | ||
| 174 | +3.215437 Technique b'word:ChIP-exo' | ||
| 175 | +3.209263 Gversion b'lemma:asm584v2' | ||
| 176 | +3.209263 Gversion b'word:ASM584v2' | ||
| 177 | +3.172641 O b'lemma:at' | ||
| 178 | +3.144467 O b'lemma:Custom' | ||
| 179 | +3.144467 O b'word:Custom' | ||
| 180 | +3.098885 Technique b'lemma:rna-seq' | ||
| 181 | +3.054449 O b'lemma:2' | ||
| 182 | +3.054449 O b'word:2' | ||
| 183 | +3.034553 Supp b'+1:lemma:\xc2\xb5m' | ||
| 184 | +3.034553 Supp b'+1:word:\xc2\xb5M' | ||
| 185 | +3.000931 O b'-1:lemma:tag' | ||
| 186 | +2.989138 O b'lemma:.' | ||
| 187 | +2.989138 O b'postag:.' | ||
| 188 | +2.989138 O b'word:.' | ||
| 189 | +2.981955 Strain b'+1:lemma:substr' | ||
| 190 | +2.981955 Strain b'+1:word:substr' | ||
| 191 | +2.977816 Technique b'lemma:chipseq' | ||
| 192 | +2.916006 O b'lemma:1' | ||
| 193 | +2.916006 O b'word:1' | ||
| 194 | +2.871451 Supp b'postag:VBP' | ||
| 195 | +2.856639 Gtype b'lemma:delta-fnr' | ||
| 196 | +2.856639 Gtype b'word:delta-fnr' | ||
| 197 | +2.843912 O b'lemma:ompr' | ||
| 198 | +2.843912 O b'word:OmpR' | ||
| 199 | +2.751390 Supp b'lemma:nacl' | ||
| 200 | +2.751390 Supp b'word:NaCl' | ||
| 201 | +2.716201 O b'+1:lemma:pq' | ||
| 202 | +2.716201 O b'+1:word:PQ' | ||
| 203 | +2.704016 O b'postag:CC' | ||
| 204 | +2.702834 O b'lemma:a' | ||
| 205 | +2.688516 O b'lemma:b' | ||
| 206 | +2.688516 O b'word:B' | ||
| 207 | +2.677526 Gtype b'lemma:flag-tag' | ||
| 208 | +2.677526 Gtype b'-1:lemma:c-terminal' | ||
| 209 | +2.677526 Gtype b'word:Flag-tag' | ||
| 210 | +2.677526 Gtype b'-1:word:C-terminal' | ||
| 211 | +2.654486 O b'lemma:with' | ||
| 212 | +2.654486 O b'word:with' | ||
| 213 | +2.651693 O b'postag:IN' | ||
| 214 | +2.649950 Gtype b'lemma:type' | ||
| 215 | +2.649950 Gtype b'word:type' | ||
| 216 | +2.636720 O b'lemma:3' | ||
| 217 | +2.636720 O b'word:3' | ||
| 218 | +2.631937 O b'-1:lemma:lb' | ||
| 219 | +2.631937 O b'-1:word:LB' | ||
| 220 | +2.618290 Supp b'lemma:glucose' | ||
| 221 | +2.618290 Supp b'word:glucose' | ||
| 222 | +2.608453 O b'-1:word:Aerobic' | ||
| 223 | +2.600667 Supp b'lemma:arginine' | ||
| 224 | +2.585328 O b'lemma:chip' | ||
| 225 | +2.578251 Supp b'lemma:rifampicin' | ||
| 226 | +2.578251 Supp b'word:rifampicin' | ||
| 227 | +2.573636 Supp b'+1:lemma:Deficient' | ||
| 228 | +2.514589 O b'postag::' | ||
| 229 | +2.492658 O b'lemma:Cra' | ||
| 230 | +2.487492 Substrain b'lemma:mg1655' | ||
| 231 | +2.487492 Substrain b'word:MG1655' | ||
| 232 | +2.478149 Air b'word:anaerobic' | ||
| 233 | +2.456656 Gversion b'-1:lemma:nc' | ||
| 234 | +2.456656 Gversion b'-1:word:NC' | ||
| 235 | +2.452611 Anti b'lemma:seqa' | ||
| 236 | +2.452611 Anti b'word:SeqA' | ||
| 237 | +2.445869 O b'postag:VBN' | ||
| 238 | +2.441392 O b'word:A' | ||
| 239 | +2.434041 O b'+1:postag:NNP' | ||
| 240 | +2.430022 O b'-1:lemma:0.3' | ||
| 241 | +2.430022 O b'-1:word:0.3' | ||
| 242 | +2.411145 Air b'lemma:Aerobic' | ||
| 243 | +2.390202 Supp b'lemma:Leu' | ||
| 244 | +2.390202 Supp b'word:Leu' | ||
| 245 | +2.387116 Gtype b'lemma:arca8myc' | ||
| 246 | +2.387116 Gtype b'word:ArcA8myc' | ||
| 247 | +2.375840 Technique b'word:RNA-Seq' | ||
| 248 | +2.359444 O b'-1:lemma:glucose' | ||
| 249 | +2.359444 O b'-1:word:glucose' | ||
| 250 | +2.351625 Strain b'lemma:k-12' | ||
| 251 | +2.351625 Strain b'word:K-12' | ||
| 252 | +2.318240 Supp b'-1:lemma:Cra' | ||
| 253 | +2.291182 Gversion b'lemma:chip-seq' | ||
| 254 | +2.291116 Anti b'lemma:none' | ||
| 255 | +2.291116 Anti b'word:none' | ||
| 256 | +2.290566 Gversion b'lemma:nc' | ||
| 257 | +2.290566 Gversion b'word:NC' | ||
| 258 | +2.284268 O b'+1:lemma:or' | ||
| 259 | +2.284268 O b'+1:word:or' | ||
| 260 | +2.283438 O b'lemma::' | ||
| 261 | +2.283438 O b'word::' | ||
| 262 | +2.263553 Supp b'lemma:acetate' | ||
| 263 | +2.263553 Supp b'word:acetate' | ||
| 264 | +2.260492 O b'-1:lemma:0.3-0.35' | ||
| 265 | +2.260492 O b'-1:word:0.3-0.35' | ||
| 266 | +2.253939 Gversion b'word:ChIP-Seq' | ||
| 267 | +2.250232 Technique b'lemma:rnaseq' | ||
| 268 | +2.250232 Technique b'word:RNASeq' | ||
| 269 | +2.232794 O b'+1:word:ChIP-Seq' | ||
| 270 | +2.229103 Med b'-1:lemma:ml' | ||
| 271 | +2.229103 Med b'-1:word:ml' | ||
| 272 | +2.227590 O b'lemma:culture' | ||
| 273 | +2.224596 Gtype b'+1:lemma:type' | ||
| 274 | +2.224596 Gtype b'+1:word:type' | ||
| 275 | +2.200566 O b'lemma:rep3' | ||
| 276 | +2.200566 O b'word:rep3' | ||
| 277 | +2.182661 Anti b'lemma:\xcf\x8332' | ||
| 278 | +2.182661 Anti b'word:\xcf\x8332' | ||
| 279 | +2.181231 Air b'lemma:anaeroibc' | ||
| 280 | +2.181231 Air b'word:Anaeroibc' | ||
| 281 | +2.181006 Gtype b'lemma:wildtype' | ||
| 282 | +2.179557 Supp b'lemma:no3' | ||
| 283 | +2.179557 Supp b'word:NO3' | ||
| 284 | +2.168687 O b'+1:word:were' | ||
| 285 | +2.168597 O b'lemma:rep1' | ||
| 286 | +2.168597 O b'word:rep1' | ||
| 287 | +2.167529 Air b'lemma:aerobically' | ||
| 288 | +2.167529 Air b'word:aerobically' | ||
| 289 | +2.141925 Supp b'-1:lemma:+' | ||
| 290 | +2.141925 Supp b'-1:word:+' | ||
| 291 | +2.141556 Air b'-1:lemma:ChIP-Seq' | ||
| 292 | +2.141556 Air b'-1:word:ChIP-Seq' | ||
| 293 | +2.136723 Temp b'+1:lemma:in' | ||
| 294 | +2.136723 Temp b'+1:word:in' | ||
| 295 | +2.120975 Vess b'lemma:flask' | ||
| 296 | +2.120975 Vess b'-1:lemma:warm' | ||
| 297 | +2.120975 Vess b'word:flask' | ||
| 298 | +2.120975 Vess b'-1:word:warmed' | ||
| 299 | +2.115337 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 300 | +2.115337 Gtype b'-1:word:\xe2\x88\x86' | ||
| 301 | +2.111591 Gtype b'lemma:\xce\xb4soxr' | ||
| 302 | +2.111591 Gtype b'word:\xce\x94soxR' | ||
| 303 | +2.087111 Technique b'-1:lemma:chip-exo' | ||
| 304 | +2.073917 Gtype b'word:cra' | ||
| 305 | +2.071081 Agit b'+1:lemma:rpm' | ||
| 306 | +2.071081 Agit b'+1:word:rpm' | ||
| 307 | +2.070334 Agit b'lemma:rpm' | ||
| 308 | +2.070334 Agit b'word:rpm' | ||
| 309 | +2.067325 Gtype b'lemma:dfnr' | ||
| 310 | +2.067325 Gtype b'word:dFNR' | ||
| 311 | +2.061229 Air b'lemma:anaerobically' | ||
| 312 | +2.061229 Air b'word:anaerobically' | ||
| 313 | +2.054028 Supp b'-1:lemma:with' | ||
| 314 | +2.054028 Supp b'-1:word:with' | ||
| 315 | +2.046181 O b'postag:VBG' | ||
| 316 | +2.032013 Supp b'lemma:Fe' | ||
| 317 | +2.032013 Supp b'word:Fe' | ||
| 318 | +2.030145 pH b'+1:postag:CD' | ||
| 319 | +2.022741 Med b'-1:lemma:fresh' | ||
| 320 | +2.022741 Med b'-1:word:fresh' | ||
| 321 | +2.019221 Gtype b'+1:lemma:with' | ||
| 322 | +2.019221 Gtype b'+1:word:with' | ||
| 323 | +2.012561 Air b'lemma:aerobic' | ||
| 324 | +2.012064 Gtype b'-1:postag:VBG' | ||
| 325 | +2.011339 Med b'+1:lemma:0.4' | ||
| 326 | +2.011339 Med b'+1:word:0.4' | ||
| 327 | +2.009320 Supp b'lemma:Adenine' | ||
| 328 | +2.009320 Supp b'word:Adenine' | ||
| 329 | +2.007291 Air b'-1:postag::' | ||
| 330 | +1.983786 Anti b'+1:postag:VBN' | ||
| 331 | +1.983224 O b'-1:lemma:into' | ||
| 332 | +1.983224 O b'-1:word:into' | ||
| 333 | +1.964035 O b'lemma:rep2' | ||
| 334 | +1.964035 O b'word:rep2' | ||
| 335 | +1.959783 Gtype b'lemma:pk4854' | ||
| 336 | +1.959783 Gtype b'word:PK4854' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.303383 Temp b'isLower' | ||
| 341 | +-0.309535 Air b'-1:postag:JJ' | ||
| 342 | +-0.310017 Supp b'postag:-LRB-' | ||
| 343 | +-0.317396 O b'+1:lemma:_' | ||
| 344 | +-0.317396 O b'+1:word:_' | ||
| 345 | +-0.325240 Technique b'-1:postag::' | ||
| 346 | +-0.330686 O b'lemma:20' | ||
| 347 | +-0.330686 O b'word:20' | ||
| 348 | +-0.332939 Gtype b'-1:postag:CD' | ||
| 349 | +-0.338184 O b'+1:lemma:minimal' | ||
| 350 | +-0.338184 O b'+1:word:minimal' | ||
| 351 | +-0.344465 Gtype b'+1:lemma:-lrb-' | ||
| 352 | +-0.344465 Gtype b'+1:word:-LRB-' | ||
| 353 | +-0.348653 O b'+1:postag:IN' | ||
| 354 | +-0.349230 Strain b'isLower' | ||
| 355 | +-0.358539 O b'-1:lemma:n2' | ||
| 356 | +-0.358539 O b'-1:word:N2' | ||
| 357 | +-0.360467 O b'-1:lemma:ph' | ||
| 358 | +-0.360467 O b'-1:word:pH' | ||
| 359 | +-0.372464 O b'lemma:anaerobic' | ||
| 360 | +-0.376573 O b'-1:lemma:with' | ||
| 361 | +-0.376573 O b'-1:word:with' | ||
| 362 | +-0.386822 O b'-1:lemma:delta' | ||
| 363 | +-0.386822 O b'-1:word:delta' | ||
| 364 | +-0.388023 pH b'isNumber' | ||
| 365 | +-0.388961 O b'-1:postag:IN' | ||
| 366 | +-0.389061 O b'-1:lemma:mm' | ||
| 367 | +-0.389061 O b'-1:word:mM' | ||
| 368 | +-0.402376 O b'+1:lemma:rep2' | ||
| 369 | +-0.402376 O b'+1:word:rep2' | ||
| 370 | +-0.428619 Supp b'+1:lemma:rifampicin' | ||
| 371 | +-0.428619 Supp b'+1:word:rifampicin' | ||
| 372 | +-0.428641 O b'lemma:k-12' | ||
| 373 | +-0.428641 O b'word:K-12' | ||
| 374 | +-0.437232 O b'-1:lemma:co2' | ||
| 375 | +-0.437232 O b'-1:word:CO2' | ||
| 376 | +-0.452931 O b'lemma:glucose' | ||
| 377 | +-0.452931 O b'word:glucose' | ||
| 378 | +-0.457255 O b'lemma:aerobically' | ||
| 379 | +-0.457255 O b'word:aerobically' | ||
| 380 | +-0.457512 O b'+1:lemma:for' | ||
| 381 | +-0.459154 Anti b'+1:lemma:anti-fur' | ||
| 382 | +-0.459154 Anti b'+1:word:anti-Fur' | ||
| 383 | +-0.468795 O b'-1:lemma:dissolve' | ||
| 384 | +-0.468795 O b'+1:lemma:methanol' | ||
| 385 | +-0.468795 O b'-1:word:dissolved' | ||
| 386 | +-0.468795 O b'+1:word:methanol' | ||
| 387 | +-0.471109 Supp b'lemma:and' | ||
| 388 | +-0.471109 Supp b'word:and' | ||
| 389 | +-0.472339 O b'lemma:aerobic' | ||
| 390 | +-0.475261 O b'lemma:0.3' | ||
| 391 | +-0.475261 O b'word:0.3' | ||
| 392 | +-0.483590 Air b'postag:CD' | ||
| 393 | +-0.483923 O b'+1:postag:-RRB-' | ||
| 394 | +-0.497463 Med b'-1:postag:NN' | ||
| 395 | +-0.499049 Supp b'-1:lemma:-lrb-' | ||
| 396 | +-0.499049 Supp b'-1:word:-LRB-' | ||
| 397 | +-0.501219 O b'+1:lemma:1m' | ||
| 398 | +-0.501219 O b'+1:word:1M' | ||
| 399 | +-0.502085 Supp b'+1:postag::' | ||
| 400 | +-0.515749 Supp b'+1:postag:VBN' | ||
| 401 | +-0.519934 O b'+1:lemma:supplement' | ||
| 402 | +-0.519934 O b'+1:word:supplemented' | ||
| 403 | +-0.531150 O b'+1:lemma:until' | ||
| 404 | +-0.531150 O b'+1:word:until' | ||
| 405 | +-0.531590 O b'lemma:methanol' | ||
| 406 | +-0.531590 O b'word:methanol' | ||
| 407 | +-0.534769 O b'lemma:medium' | ||
| 408 | +-0.534769 O b'word:medium' | ||
| 409 | +-0.537022 O b'lemma:fructose' | ||
| 410 | +-0.537022 O b'word:fructose' | ||
| 411 | +-0.537520 O b'lemma:of' | ||
| 412 | +-0.537520 O b'word:of' | ||
| 413 | +-0.537621 O b'+1:lemma:2.0' | ||
| 414 | +-0.537621 O b'+1:word:2.0' | ||
| 415 | +-0.541851 O b'+1:lemma:g/l' | ||
| 416 | +-0.541851 O b'+1:word:g/L' | ||
| 417 | +-0.542060 Supp b'-1:postag:-LRB-' | ||
| 418 | +-0.549971 Med b'lemma:-lrb-' | ||
| 419 | +-0.549971 Med b'word:-LRB-' | ||
| 420 | +-0.564385 O b'word:cells' | ||
| 421 | +-0.577014 Anti b'isUpper' | ||
| 422 | +-0.580839 O b'-1:postag:JJ' | ||
| 423 | +-0.595778 Med b'+1:postag:IN' | ||
| 424 | +-0.613291 Med b'postag:CD' | ||
| 425 | +-0.630342 O b'+1:word:C' | ||
| 426 | +-0.633021 O b'lemma:purify' | ||
| 427 | +-0.636573 Supp b'+1:lemma:acetate' | ||
| 428 | +-0.636573 Supp b'+1:word:acetate' | ||
| 429 | +-0.639384 O b'-1:lemma:2' | ||
| 430 | +-0.639384 O b'-1:word:2' | ||
| 431 | +-0.641103 O b'lemma:37' | ||
| 432 | +-0.641103 O b'word:37' | ||
| 433 | +-0.657693 O b'lemma:mid-log' | ||
| 434 | +-0.657693 O b'word:mid-log' | ||
| 435 | +-0.669108 O b'-1:lemma:chip-exo' | ||
| 436 | +-0.676699 O b'-1:lemma:rpob' | ||
| 437 | +-0.676699 O b'-1:word:RpoB' | ||
| 438 | +-0.683926 Supp b'+1:lemma:fructose' | ||
| 439 | +-0.683926 Supp b'+1:word:fructose' | ||
| 440 | +-0.696629 O b'lemma:\xce\xb4fur' | ||
| 441 | +-0.696629 O b'word:\xce\x94fur' | ||
| 442 | +-0.716858 Med b'postag:-LRB-' | ||
| 443 | +-0.717563 O b'-1:lemma:37' | ||
| 444 | +-0.717563 O b'-1:word:37' | ||
| 445 | +-0.742255 pH b'isUpper' | ||
| 446 | +-0.751253 Air b'postag:NN' | ||
| 447 | +-0.760807 O b'-1:lemma:\xe2\x88\x86' | ||
| 448 | +-0.760807 O b'-1:word:\xe2\x88\x86' | ||
| 449 | +-0.762242 O b'lemma:30' | ||
| 450 | +-0.762242 O b'word:30' | ||
| 451 | +-0.778777 O b'+1:lemma:mm' | ||
| 452 | +-0.778777 O b'+1:word:mM' | ||
| 453 | +-0.782724 O b'lemma:nitrate' | ||
| 454 | +-0.782724 O b'word:nitrate' | ||
| 455 | +-0.783200 O b'-1:lemma:1' | ||
| 456 | +-0.783200 O b'-1:word:1' | ||
| 457 | +-0.788591 Phase b'isUpper' | ||
| 458 | +-0.789080 O b'-1:lemma:30' | ||
| 459 | +-0.789080 O b'-1:word:30' | ||
| 460 | +-0.790624 Supp b'postag:CC' | ||
| 461 | +-0.796125 Gtype b'postag:VBG' | ||
| 462 | +-0.802899 O b'-1:lemma:nsrr' | ||
| 463 | +-0.802899 O b'-1:word:NsrR' | ||
| 464 | +-0.828431 Gtype b'postag::' | ||
| 465 | +-0.831044 O b'lemma:2h' | ||
| 466 | +-0.831044 O b'-1:lemma:additional' | ||
| 467 | +-0.831044 O b'word:2h' | ||
| 468 | +-0.831044 O b'-1:word:additional' | ||
| 469 | +-0.839187 O b'lemma:media' | ||
| 470 | +-0.839187 O b'word:media' | ||
| 471 | +-0.840728 Supp b'postag::' | ||
| 472 | +-0.863650 Air b'-1:lemma:or' | ||
| 473 | +-0.863650 Air b'-1:word:or' | ||
| 474 | +-0.885820 Temp b'postag:NN' | ||
| 475 | +-0.897688 Med b'-1:postag:CD' | ||
| 476 | +-0.900253 pH b'isLower' | ||
| 477 | +-0.911088 O b'-1:lemma:until' | ||
| 478 | +-0.911088 O b'-1:word:until' | ||
| 479 | +-0.944420 O b'+1:word:ChIP-exo' | ||
| 480 | +-0.948977 O b'lemma:anaerobically' | ||
| 481 | +-0.948977 O b'word:anaerobically' | ||
| 482 | +-0.951515 Agit b'isUpper' | ||
| 483 | +-0.983125 Gtype b'isUpper' | ||
| 484 | +-0.988396 O b'+1:lemma:at' | ||
| 485 | +-0.988396 O b'+1:word:at' | ||
| 486 | +-0.995833 Supp b'+1:lemma:nacl' | ||
| 487 | +-0.995833 Supp b'+1:word:NaCl' | ||
| 488 | +-0.997040 O b'-1:lemma:ml' | ||
| 489 | +-0.997040 O b'-1:word:ml' | ||
| 490 | +-1.018669 Supp b'-1:postag:NNP' | ||
| 491 | +-1.037921 O b'lemma:nitrogen' | ||
| 492 | +-1.037921 O b'word:nitrogen' | ||
| 493 | +-1.040146 O b'+1:lemma:1' | ||
| 494 | +-1.040146 O b'+1:word:1' | ||
| 495 | +-1.045534 Med b'-1:postag:IN' | ||
| 496 | +-1.056151 O b'word:ChIP-exo' | ||
| 497 | +-1.089520 O b'lemma:wt' | ||
| 498 | +-1.114097 O b'+1:lemma:+' | ||
| 499 | +-1.114097 O b'+1:word:+' | ||
| 500 | +-1.120376 Gtype b'isLower' | ||
| 501 | +-1.143082 O b'-1:lemma:IP' | ||
| 502 | +-1.143082 O b'-1:word:IP' | ||
| 503 | +-1.158305 OD b'+1:postag:NN' | ||
| 504 | +-1.159364 O b'-1:postag::' | ||
| 505 | +-1.163927 O b'+1:lemma:in' | ||
| 506 | +-1.163927 O b'+1:word:in' | ||
| 507 | +-1.192075 O b'+1:postag:VBG' | ||
| 508 | +-1.203597 O b'postag:RB' | ||
| 509 | +-1.328635 O b'+1:lemma:2' | ||
| 510 | +-1.328635 O b'+1:word:2' | ||
| 511 | +-1.418108 Technique b'isLower' | ||
| 512 | +-1.442615 O b'-1:lemma:sample' | ||
| 513 | +-1.516830 O b'lemma:rifampicin' | ||
| 514 | +-1.516830 O b'word:rifampicin' | ||
| 515 | +-1.534388 Supp b'+1:lemma:-lrb-' | ||
| 516 | +-1.534388 Supp b'+1:word:-LRB-' | ||
| 517 | +-1.563425 Supp b'+1:postag:-LRB-' | ||
| 518 | +-1.574320 Supp b'postag:JJ' | ||
| 519 | +-1.581559 O b'-1:lemma:fresh' | ||
| 520 | +-1.581559 O b'-1:word:fresh' | ||
| 521 | +-1.612036 Gversion b'isLower' | ||
| 522 | +-1.656921 Anti b'postag:NNP' | ||
| 523 | +-1.709765 O b'-1:lemma:vol' | ||
| 524 | +-1.709765 O b'-1:word:vol' | ||
| 525 | +-1.748581 Air b'+1:postag:JJ' | ||
| 526 | +-1.800378 Technique b'isNumber' | ||
| 527 | +-1.802484 O b'postag:VBP' | ||
| 528 | +-1.806249 Supp b'+1:lemma:,' | ||
| 529 | +-1.806249 Supp b'+1:postag:,' | ||
| 530 | +-1.806249 Supp b'+1:word:,' | ||
| 531 | +-2.105469 O b'-1:lemma:_' | ||
| 532 | +-2.105469 O b'-1:word:_' | ||
| 533 | +-2.207206 Gtype b'isNumber' | ||
| 534 | +-2.372723 Phase b'-1:postag:JJ' | ||
| 535 | +-2.553668 O b'-1:postag:VBG' | ||
| 536 | +-2.823830 O b'-1:lemma::' | ||
| 537 | +-2.823830 O b'-1:word::' | ||
| 538 | +-3.368572 Temp b'+1:postag:IN' | ||
| 539 | +-3.402875 Phase b'postag:JJ' | ||
| 540 | + |
CRF/reports/report_Run_4_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.10934136756341511, 'c2': 0.11233592223188592} | ||
| 5 | +best CV score:0.880070585228673 | ||
| 6 | +model size: 0.16M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7987637165072743 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 0.909 0.690 0.784 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 0.917 1.000 0.957 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.882 0.788 0.832 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.848 0.791 0.819 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.850 0.758 0.799 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 4.835421 | ||
| 32 | +Med -> Med 4.432130 | ||
| 33 | +Temp -> Temp 4.381858 | ||
| 34 | +Supp -> Supp 4.249606 | ||
| 35 | +Anti -> Anti 4.153912 | ||
| 36 | +Agit -> Agit 3.968681 | ||
| 37 | +Air -> Air 3.831359 | ||
| 38 | +Gtype -> Gtype 3.677992 | ||
| 39 | +Gversion -> Gversion 3.265155 | ||
| 40 | +O -> O 3.210778 | ||
| 41 | +Phase -> Phase 3.136151 | ||
| 42 | +Technique -> Technique 2.609081 | ||
| 43 | +pH -> pH 2.036266 | ||
| 44 | +Substrain -> Gtype 0.689009 | ||
| 45 | +Air -> O 0.614440 | ||
| 46 | +O -> Supp 0.599670 | ||
| 47 | +O -> Technique 0.575931 | ||
| 48 | +Gtype -> Supp 0.484890 | ||
| 49 | +O -> Gtype 0.452540 | ||
| 50 | +Technique -> Air 0.313681 | ||
| 51 | +Gtype -> Air 0.150938 | ||
| 52 | +Med -> O 0.101880 | ||
| 53 | +Supp -> O 0.080361 | ||
| 54 | +Gtype -> pH 0.018366 | ||
| 55 | +O -> Strain -0.000117 | ||
| 56 | +Supp -> Temp -0.004625 | ||
| 57 | +Air -> Agit -0.004733 | ||
| 58 | +O -> OD -0.005112 | ||
| 59 | +Anti -> Med -0.010247 | ||
| 60 | +pH -> Supp -0.019865 | ||
| 61 | +Gversion -> Air -0.021135 | ||
| 62 | +Technique -> Gversion -0.026379 | ||
| 63 | +Vess -> O -0.027766 | ||
| 64 | +Gtype -> OD -0.029261 | ||
| 65 | +O -> Substrain -0.033985 | ||
| 66 | +Air -> Technique -0.035861 | ||
| 67 | +O -> Phase -0.036615 | ||
| 68 | +OD -> O -0.041954 | ||
| 69 | +Gversion -> Gtype -0.044992 | ||
| 70 | +OD -> Supp -0.048485 | ||
| 71 | +O -> Gversion -0.055499 | ||
| 72 | +Phase -> Gtype -0.077815 | ||
| 73 | +Anti -> Temp -0.081500 | ||
| 74 | +Phase -> Med -0.087481 | ||
| 75 | +Temp -> Med -0.102584 | ||
| 76 | +Anti -> Supp -0.104656 | ||
| 77 | +Gtype -> Phase -0.110657 | ||
| 78 | +Supp -> pH -0.119733 | ||
| 79 | +Agit -> Air -0.121190 | ||
| 80 | +Gtype -> Temp -0.124907 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +OD -> O -0.041954 | ||
| 85 | +Gversion -> Gtype -0.044992 | ||
| 86 | +OD -> Supp -0.048485 | ||
| 87 | +O -> Gversion -0.055499 | ||
| 88 | +Phase -> Gtype -0.077815 | ||
| 89 | +Anti -> Temp -0.081500 | ||
| 90 | +Phase -> Med -0.087481 | ||
| 91 | +Temp -> Med -0.102584 | ||
| 92 | +Anti -> Supp -0.104656 | ||
| 93 | +Gtype -> Phase -0.110657 | ||
| 94 | +Supp -> pH -0.119733 | ||
| 95 | +Agit -> Air -0.121190 | ||
| 96 | +Gtype -> Temp -0.124907 | ||
| 97 | +OD -> Technique -0.148325 | ||
| 98 | +Supp -> Air -0.175860 | ||
| 99 | +Anti -> Gtype -0.176413 | ||
| 100 | +Phase -> OD -0.183709 | ||
| 101 | +Supp -> Anti -0.184780 | ||
| 102 | +Air -> Med -0.197230 | ||
| 103 | +O -> Agit -0.219762 | ||
| 104 | +Gtype -> Gversion -0.221487 | ||
| 105 | +Phase -> Supp -0.230211 | ||
| 106 | +Air -> Supp -0.237948 | ||
| 107 | +Phase -> Technique -0.238586 | ||
| 108 | +Gversion -> Supp -0.239381 | ||
| 109 | +Technique -> Supp -0.246780 | ||
| 110 | +Supp -> Phase -0.249929 | ||
| 111 | +Technique -> OD -0.257903 | ||
| 112 | +Air -> Phase -0.275963 | ||
| 113 | +Agit -> O -0.288627 | ||
| 114 | +Anti -> O -0.319981 | ||
| 115 | +Supp -> Gversion -0.332251 | ||
| 116 | +OD -> Air -0.336991 | ||
| 117 | +Air -> Temp -0.361852 | ||
| 118 | +Gtype -> Technique -0.399331 | ||
| 119 | +Supp -> Technique -0.405956 | ||
| 120 | +Phase -> O -0.432789 | ||
| 121 | +Technique -> Gtype -0.440396 | ||
| 122 | +Supp -> Gtype -0.441214 | ||
| 123 | +Technique -> pH -0.443537 | ||
| 124 | +Gtype -> Anti -0.491458 | ||
| 125 | +O -> Med -0.522931 | ||
| 126 | +Gtype -> Med -0.545579 | ||
| 127 | +Gversion -> O -0.619815 | ||
| 128 | +O -> Air -0.714655 | ||
| 129 | +Gtype -> O -0.835271 | ||
| 130 | +Technique -> O -0.871817 | ||
| 131 | +Supp -> Med -0.890595 | ||
| 132 | +Med -> Supp -0.986516 | ||
| 133 | +Substrain -> O -1.034601 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +2.709537 Gtype b'word[:1]:\xce\x94' | ||
| 138 | +2.682016 Technique b'word[:2]:Ch' | ||
| 139 | +2.639969 O b'word[:2]:re' | ||
| 140 | +2.530056 O b'lemma:_' | ||
| 141 | +2.530056 O b'word[:1]:_' | ||
| 142 | +2.530056 O b'word:_' | ||
| 143 | +2.312646 Air b'lemma:anaerobic' | ||
| 144 | +2.190494 O b'lemma:2' | ||
| 145 | +2.190494 O b'word:2' | ||
| 146 | +2.027500 O b'word:A' | ||
| 147 | +1.983858 Air b'word[:2]:An' | ||
| 148 | +1.950019 Air b'word[:2]:Ae' | ||
| 149 | +1.950019 Air b'word:Aerobic' | ||
| 150 | +1.947205 Gtype b'lemma:wt' | ||
| 151 | +1.940543 Gtype b'word[:1]:W' | ||
| 152 | +1.844619 Supp b'-1:word:Cra' | ||
| 153 | +1.822143 Air b'word[:1]:A' | ||
| 154 | +1.818988 O b'word[:1]:S' | ||
| 155 | +1.775674 Technique b'word[:2]:RN' | ||
| 156 | +1.765741 O b'lemma:1' | ||
| 157 | +1.765741 O b'word:1' | ||
| 158 | +1.724942 Phase b'lemma:mid-log' | ||
| 159 | +1.724942 Phase b'word:mid-log' | ||
| 160 | +1.723723 Supp b'word[:1]:I' | ||
| 161 | +1.723541 Gtype b'word[:1]:d' | ||
| 162 | +1.713163 O b'postag::' | ||
| 163 | +1.713163 O b'postag[:1]::' | ||
| 164 | +1.712969 Supp b'+1:lemma:\xc2\xb5m' | ||
| 165 | +1.712969 Supp b'+1:word:\xc2\xb5M' | ||
| 166 | +1.705742 O b'lemma:3' | ||
| 167 | +1.705742 O b'word:3' | ||
| 168 | +1.679949 Gtype b'hGreek' | ||
| 169 | +1.676513 Air b'word[:1]:a' | ||
| 170 | +1.653704 Supp b'-1:postag:CC' | ||
| 171 | +1.616788 O b'-1:lemma:tag' | ||
| 172 | +1.599401 Air b'word[:2]:an' | ||
| 173 | +1.579379 O b'isLower' | ||
| 174 | +1.575060 O b'-1:word:tag' | ||
| 175 | +1.543882 O b'word[:1]:G' | ||
| 176 | +1.542332 Substrain b'word[:2]:MG' | ||
| 177 | +1.517878 Anti b'word[:2]:an' | ||
| 178 | +1.501383 O b'lemma:a' | ||
| 179 | +1.478818 Supp b'word[:2]:ni' | ||
| 180 | +1.475795 Supp b'-1:lemma:with' | ||
| 181 | +1.475795 Supp b'-1:word:with' | ||
| 182 | +1.470736 Gtype b'word[:2]:Fl' | ||
| 183 | +1.468144 Gversion b'word[:2]:00' | ||
| 184 | +1.466264 Gtype b'symb' | ||
| 185 | +1.463246 Gtype b'word[:1]:w' | ||
| 186 | +1.451800 O b'lemma:.' | ||
| 187 | +1.451800 O b'postag:.' | ||
| 188 | +1.451800 O b'postag[:1]:.' | ||
| 189 | +1.451800 O b'word:.' | ||
| 190 | +1.449609 pH b'+1:postag:CD' | ||
| 191 | +1.443950 Supp b'lemma:Iron' | ||
| 192 | +1.443950 Supp b'word[:2]:Ir' | ||
| 193 | +1.443950 Supp b'word:Iron' | ||
| 194 | +1.443950 Supp b'+1:word:Deficient' | ||
| 195 | +1.440541 O b'postag:IN' | ||
| 196 | +1.440541 O b'postag[:1]:I' | ||
| 197 | +1.440541 O b'postag[:2]:IN' | ||
| 198 | +1.432941 O b'word[:2]:ch' | ||
| 199 | +1.423481 O b'word[:2]:ge' | ||
| 200 | +1.416303 O b'word[:1]:-' | ||
| 201 | +1.412935 Strain b'+1:lemma:substr' | ||
| 202 | +1.412935 Strain b'+1:word:substr' | ||
| 203 | +1.409982 O b'lemma:with' | ||
| 204 | +1.409982 O b'word:with' | ||
| 205 | +1.409286 Substrain b'word[:1]:M' | ||
| 206 | +1.405314 O b'lemma:-' | ||
| 207 | +1.405314 O b'word:-' | ||
| 208 | +1.400041 Technique b'word[:1]:R' | ||
| 209 | +1.397927 O b'word[:2]:Rp' | ||
| 210 | +1.391254 O b'word[:1]:B' | ||
| 211 | +1.385270 Technique b'word[:1]:C' | ||
| 212 | +1.383408 O b'word[:1]:C' | ||
| 213 | +1.375474 Supp b'lemma:pq' | ||
| 214 | +1.375474 Supp b'word[:2]:PQ' | ||
| 215 | +1.375474 Supp b'word:PQ' | ||
| 216 | +1.368840 Gtype b'word[:2]:PK' | ||
| 217 | +1.361629 Supp b'word[:2]:gl' | ||
| 218 | +1.355258 Supp b'lemma:arginine' | ||
| 219 | +1.351941 Gtype b'lemma:arca8myc' | ||
| 220 | +1.351941 Gtype b'word:ArcA8myc' | ||
| 221 | +1.348800 pH b'word[:2]:pH' | ||
| 222 | +1.345187 O b'+1:lemma:pq' | ||
| 223 | +1.345187 O b'+1:word:PQ' | ||
| 224 | +1.341451 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 225 | +1.341451 Gtype b'-1:word:\xe2\x88\x86' | ||
| 226 | +1.330835 Supp b'word[:2]:Fe' | ||
| 227 | +1.329888 Gtype b'word[:1]:t' | ||
| 228 | +1.324689 O b'-1:word:Aerobic' | ||
| 229 | +1.311273 Phase b'word[:2]:ex' | ||
| 230 | +1.293669 Air b'word:anaerobic' | ||
| 231 | +1.281678 OD b'word[:1]:O' | ||
| 232 | +1.279382 Air b'+1:postag:IN' | ||
| 233 | +1.278560 O b'postag:CC' | ||
| 234 | +1.278560 O b'postag[:2]:CC' | ||
| 235 | +1.274647 O b'-1:lemma:lb' | ||
| 236 | +1.274647 O b'-1:word:LB' | ||
| 237 | +1.273896 Phase b'word[:1]:e' | ||
| 238 | +1.263423 O b'word[:2]:Cr' | ||
| 239 | +1.244847 Gtype b'word[:2]:WT' | ||
| 240 | +1.244847 Gtype b'word:WT' | ||
| 241 | +1.236647 Gtype b'word[:1]:F' | ||
| 242 | +1.232072 Technique b'lemma:ChIP-exo' | ||
| 243 | +1.218565 Supp b'lemma:acetate' | ||
| 244 | +1.218565 Supp b'word:acetate' | ||
| 245 | +1.218411 O b'word:Cra' | ||
| 246 | +1.214505 Med b'isUpper' | ||
| 247 | +1.210174 Gtype b'word[:2]:Ar' | ||
| 248 | +1.197926 Supp b'word[:1]:N' | ||
| 249 | +1.194956 Air b'word:Anaerobic' | ||
| 250 | +1.192780 O b'+1:word:were' | ||
| 251 | +1.191655 Supp b'-1:lemma:Cra' | ||
| 252 | +1.188100 Med b'word[:1]:L' | ||
| 253 | +1.185467 O b'+1:postag:RB' | ||
| 254 | +1.185391 Gversion b'-1:lemma:nc' | ||
| 255 | +1.185391 Gversion b'-1:word:NC' | ||
| 256 | +1.182343 Med b'word[:1]:M' | ||
| 257 | +1.178948 Gtype b'word[:2]:cr' | ||
| 258 | +1.165949 pH b'word[:1]:p' | ||
| 259 | +1.163893 O b'word[:1]:R' | ||
| 260 | +1.163629 O b'word[:1]:c' | ||
| 261 | +1.155830 Phase b'lemma:stationary' | ||
| 262 | +1.155830 Phase b'word:stationary' | ||
| 263 | +1.142993 O b'+1:postag:NNP' | ||
| 264 | +1.134168 O b'word[:1]:E' | ||
| 265 | +1.133170 O b'-1:lemma:glucose' | ||
| 266 | +1.133170 O b'-1:word:glucose' | ||
| 267 | +1.132500 Supp b'word[:2]:ac' | ||
| 268 | +1.130901 O b'+1:word:ChIP-Seq' | ||
| 269 | +1.120305 Gtype b'lemma:flag-tag' | ||
| 270 | +1.120305 Gtype b'-1:lemma:c-terminal' | ||
| 271 | +1.120305 Gtype b'word:Flag-tag' | ||
| 272 | +1.120305 Gtype b'-1:word:C-terminal' | ||
| 273 | +1.110588 Supp b'postag:NNP' | ||
| 274 | +1.109954 Technique b'symb' | ||
| 275 | +1.108629 Supp b'+1:lemma:1' | ||
| 276 | +1.108629 Supp b'+1:word:1' | ||
| 277 | +1.105428 O b'lemma:b' | ||
| 278 | +1.105428 O b'word:B' | ||
| 279 | +1.104286 Gtype b'lemma:type' | ||
| 280 | +1.104286 Gtype b'word[:2]:ty' | ||
| 281 | +1.104286 Gtype b'word:type' | ||
| 282 | +1.089168 Gtype b'word[:1]:f' | ||
| 283 | +1.087372 Gversion b'lemma:nc' | ||
| 284 | +1.087372 Gversion b'word[:2]:NC' | ||
| 285 | +1.087372 Gversion b'word:NC' | ||
| 286 | +1.083150 O b'-1:lemma:0.3' | ||
| 287 | +1.083150 O b'-1:word:0.3' | ||
| 288 | +1.081216 O b'lemma:Custom' | ||
| 289 | +1.081216 O b'word:Custom' | ||
| 290 | +1.074470 O b'-1:lemma:anaerobic' | ||
| 291 | +1.073417 Gtype b'lemma:nsrr' | ||
| 292 | +1.073417 Gtype b'word[:2]:Ns' | ||
| 293 | +1.073417 Gtype b'word:NsrR' | ||
| 294 | +1.073408 Gtype b'-1:postag:VBG' | ||
| 295 | +1.057426 Supp b'lemma:rifampicin' | ||
| 296 | +1.057426 Supp b'word:rifampicin' | ||
| 297 | +1.055166 Med b'+1:lemma:0.4' | ||
| 298 | +1.055166 Med b'+1:word:0.4' | ||
| 299 | +1.052666 Supp b'word[:2]:ri' | ||
| 300 | +1.044391 Anti b'word[:1]:a' | ||
| 301 | +1.039713 Supp b'lemma:nacl' | ||
| 302 | +1.039713 Supp b'word:NaCl' | ||
| 303 | +1.030612 Gversion b'lemma:asm584v2' | ||
| 304 | +1.030612 Gversion b'word[:2]:AS' | ||
| 305 | +1.030612 Gversion b'word:ASM584v2' | ||
| 306 | +1.030597 Gversion b'lemma:chip-seq' | ||
| 307 | +1.029930 Med b'word[:1]:m' | ||
| 308 | +1.029515 Gtype b'+1:postag::' | ||
| 309 | +1.026311 Med b'lemma:MOPS' | ||
| 310 | +1.026311 Med b'word[:2]:MO' | ||
| 311 | +1.026311 Med b'word:MOPS' | ||
| 312 | +1.021842 O b'-1:lemma:ChIP-exo' | ||
| 313 | +1.020313 Med b'+1:postag:CD' | ||
| 314 | +1.017584 Anti b'+1:lemma:antibody' | ||
| 315 | +1.017584 Anti b'+1:word:antibody' | ||
| 316 | +1.017141 O b'isNumber' | ||
| 317 | +1.015378 O b'+1:lemma:od600' | ||
| 318 | +1.015378 O b'+1:word:OD600' | ||
| 319 | +1.014672 Gversion b'word:ChIP-Seq' | ||
| 320 | +1.011776 Strain b'lemma:k-12' | ||
| 321 | +1.011776 Strain b'word[:2]:K-' | ||
| 322 | +1.011776 Strain b'word:K-12' | ||
| 323 | +1.008575 Agit b'+1:lemma:rpm' | ||
| 324 | +1.008575 Agit b'+1:word:rpm' | ||
| 325 | +1.005191 O b'word[:2]:Cu' | ||
| 326 | +1.002792 Technique b'-1:lemma:chip-exo' | ||
| 327 | +1.000546 Air b'postag:RB' | ||
| 328 | +1.000546 Air b'postag[:1]:R' | ||
| 329 | +1.000546 Air b'postag[:2]:RB' | ||
| 330 | +0.992188 Supp b'-1:lemma:+' | ||
| 331 | +0.992188 Supp b'-1:word:+' | ||
| 332 | +0.991416 Gtype b'word[:1]:P' | ||
| 333 | +0.986807 O b'lemma:rpob' | ||
| 334 | +0.986807 O b'word:RpoB' | ||
| 335 | +0.985164 Supp b'+1:lemma:mm' | ||
| 336 | +0.985164 Supp b'+1:word:mM' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.277257 O b'-1:lemma:iptg' | ||
| 341 | +-0.277257 O b'-1:word:IPTG' | ||
| 342 | +-0.279683 O b'-1:lemma:37' | ||
| 343 | +-0.279683 O b'-1:word:37' | ||
| 344 | +-0.279732 O b'word[:2]:ce' | ||
| 345 | +-0.280808 O b'lemma:sodium' | ||
| 346 | +-0.280808 O b'word:Sodium' | ||
| 347 | +-0.283552 O b'lemma:37' | ||
| 348 | +-0.283552 O b'word[:2]:37' | ||
| 349 | +-0.283552 O b'word:37' | ||
| 350 | +-0.285904 O b'-1:lemma:cra' | ||
| 351 | +-0.287226 O b'lemma:fructose' | ||
| 352 | +-0.287226 O b'word:fructose' | ||
| 353 | +-0.287570 O b'word[:2]:gl' | ||
| 354 | +-0.288146 O b'+1:word:C' | ||
| 355 | +-0.288657 O b'postag:RB' | ||
| 356 | +-0.288657 O b'postag[:1]:R' | ||
| 357 | +-0.288657 O b'postag[:2]:RB' | ||
| 358 | +-0.290394 O b'+1:lemma:phosphate' | ||
| 359 | +-0.290394 O b'+1:word:phosphate' | ||
| 360 | +-0.291469 Anti b'+1:lemma:anti-fur' | ||
| 361 | +-0.291469 Anti b'+1:word:anti-Fur' | ||
| 362 | +-0.291608 Med b'-1:postag:CD' | ||
| 363 | +-0.292517 O b'+1:lemma:antibody' | ||
| 364 | +-0.292517 O b'+1:word:antibody' | ||
| 365 | +-0.293015 Temp b'postag:NN' | ||
| 366 | +-0.293202 O b'word:cells' | ||
| 367 | +-0.295080 Substrain b'isLower' | ||
| 368 | +-0.301504 Technique b'-1:postag::' | ||
| 369 | +-0.301563 O b'+1:lemma:rep2' | ||
| 370 | +-0.301563 O b'+1:word:rep2' | ||
| 371 | +-0.303285 Gtype b'-1:lemma:mg1655' | ||
| 372 | +-0.303285 Gtype b'-1:word:MG1655' | ||
| 373 | +-0.312135 pH b'isUpper' | ||
| 374 | +-0.315986 O b'word[:1]:\xce\x94' | ||
| 375 | +-0.318042 O b'-1:lemma:control' | ||
| 376 | +-0.318042 O b'-1:word:control' | ||
| 377 | +-0.320219 O b'word[:1]:F' | ||
| 378 | +-0.320234 O b'-1:lemma:mm' | ||
| 379 | +-0.320234 O b'-1:word:mM' | ||
| 380 | +-0.325890 Phase b'postag[:1]:J' | ||
| 381 | +-0.325890 Phase b'postag[:2]:JJ' | ||
| 382 | +-0.329319 Air b'isUpper' | ||
| 383 | +-0.337579 O b'lemma:of' | ||
| 384 | +-0.337579 O b'word[:2]:of' | ||
| 385 | +-0.337579 O b'word:of' | ||
| 386 | +-0.338232 O b'lemma:30' | ||
| 387 | +-0.338232 O b'word:30' | ||
| 388 | +-0.338512 Gtype b'+1:postag:CD' | ||
| 389 | +-0.340489 pH b'isNumber' | ||
| 390 | +-0.349750 Phase b'postag:JJ' | ||
| 391 | +-0.351290 O b'-1:postag:IN' | ||
| 392 | +-0.351993 Gtype b'postag[:1]:V' | ||
| 393 | +-0.351993 Gtype b'postag[:2]:VB' | ||
| 394 | +-0.352349 OD b'symb' | ||
| 395 | +-0.354429 Gtype b'+1:lemma:-rrb-' | ||
| 396 | +-0.354429 Gtype b'+1:word:-RRB-' | ||
| 397 | +-0.356978 O b'-1:lemma:chip-exo' | ||
| 398 | +-0.365676 Air b'postag[:1]:N' | ||
| 399 | +-0.365676 Air b'postag[:2]:NN' | ||
| 400 | +-0.369913 O b'+1:lemma:at' | ||
| 401 | +-0.369913 O b'+1:word:at' | ||
| 402 | +-0.374701 Supp b'-1:lemma:-lrb-' | ||
| 403 | +-0.374701 Supp b'-1:word:-LRB-' | ||
| 404 | +-0.385565 Supp b'+1:postag:VBN' | ||
| 405 | +-0.385693 O b'word[:1]:4' | ||
| 406 | +-0.396082 Technique b'isNumber' | ||
| 407 | +-0.396613 Med b'-1:postag:NN' | ||
| 408 | +-0.398175 O b'word[:1]:0' | ||
| 409 | +-0.400398 Air b'isLower' | ||
| 410 | +-0.400541 O b'+1:lemma:1m' | ||
| 411 | +-0.400541 O b'+1:word:1M' | ||
| 412 | +-0.406455 O b'+1:lemma:until' | ||
| 413 | +-0.406455 O b'+1:word:until' | ||
| 414 | +-0.406467 O b'lemma:0.3' | ||
| 415 | +-0.406467 O b'word:0.3' | ||
| 416 | +-0.406862 Supp b'-1:postag:NNP' | ||
| 417 | +-0.407709 Vess b'hUpper' | ||
| 418 | +-0.407709 Vess b'hLower' | ||
| 419 | +-0.409808 Air b'-1:lemma:or' | ||
| 420 | +-0.409808 Air b'-1:word:or' | ||
| 421 | +-0.411518 Supp b'-1:postag:-LRB-' | ||
| 422 | +-0.413893 O b'word[:2]:mg' | ||
| 423 | +-0.416294 O b'-1:lemma:\xe2\x88\x86' | ||
| 424 | +-0.416294 O b'-1:word:\xe2\x88\x86' | ||
| 425 | +-0.416443 O b'-1:lemma:dissolve' | ||
| 426 | +-0.416443 O b'+1:lemma:methanol' | ||
| 427 | +-0.416443 O b'-1:word:dissolved' | ||
| 428 | +-0.416443 O b'+1:word:methanol' | ||
| 429 | +-0.416730 O b'-1:lemma:rpob' | ||
| 430 | +-0.416730 O b'-1:word:RpoB' | ||
| 431 | +-0.420106 O b'lemma:mid-log' | ||
| 432 | +-0.420106 O b'word:mid-log' | ||
| 433 | +-0.424246 Supp b'postag:JJ' | ||
| 434 | +-0.424315 Med b'+1:postag:IN' | ||
| 435 | +-0.425368 O b'lemma:2h' | ||
| 436 | +-0.425368 O b'-1:lemma:additional' | ||
| 437 | +-0.425368 O b'word[:2]:2h' | ||
| 438 | +-0.425368 O b'word:2h' | ||
| 439 | +-0.425368 O b'-1:word:additional' | ||
| 440 | +-0.427387 Supp b'postag[:1]:J' | ||
| 441 | +-0.427387 Supp b'postag[:2]:JJ' | ||
| 442 | +-0.432272 O b'-1:lemma:ph' | ||
| 443 | +-0.432272 O b'-1:word:pH' | ||
| 444 | +-0.437208 Agit b'symb' | ||
| 445 | +-0.450378 Air b'+1:postag:JJ' | ||
| 446 | +-0.451134 Med b'symb' | ||
| 447 | +-0.452272 O b'-1:lemma:nsrr' | ||
| 448 | +-0.452272 O b'-1:word:NsrR' | ||
| 449 | +-0.452987 O b'-1:lemma:1' | ||
| 450 | +-0.452987 O b'-1:word:1' | ||
| 451 | +-0.453419 OD b'hUpper' | ||
| 452 | +-0.453419 OD b'hLower' | ||
| 453 | +-0.455390 O b'-1:lemma:30' | ||
| 454 | +-0.455390 O b'-1:word:30' | ||
| 455 | +-0.458645 Strain b'isLower' | ||
| 456 | +-0.473382 O b'+1:word:ChIP-exo' | ||
| 457 | +-0.477433 O b'word[:1]:M' | ||
| 458 | +-0.478284 Air b'-1:postag:JJ' | ||
| 459 | +-0.481981 Med b'-1:postag:IN' | ||
| 460 | +-0.490205 O b'-1:lemma:final' | ||
| 461 | +-0.490205 O b'-1:word:final' | ||
| 462 | +-0.498623 O b'+1:lemma:mm' | ||
| 463 | +-0.498623 O b'+1:word:mM' | ||
| 464 | +-0.504915 O b'-1:lemma:IP' | ||
| 465 | +-0.504915 O b'-1:word:IP' | ||
| 466 | +-0.508549 O b'+1:postag:IN' | ||
| 467 | +-0.527183 O b'-1:lemma:until' | ||
| 468 | +-0.527183 O b'-1:word:until' | ||
| 469 | +-0.534060 O b'+1:lemma:+' | ||
| 470 | +-0.534060 O b'+1:word:+' | ||
| 471 | +-0.536386 O b'-1:lemma:co2' | ||
| 472 | +-0.536386 O b'-1:word:CO2' | ||
| 473 | +-0.546923 Technique b'isLower' | ||
| 474 | +-0.549653 O b'+1:lemma:g/l' | ||
| 475 | +-0.549653 O b'+1:word:g/L' | ||
| 476 | +-0.556331 Agit b'hUpper' | ||
| 477 | +-0.556331 Agit b'hLower' | ||
| 478 | +-0.566036 O b'-1:lemma:fresh' | ||
| 479 | +-0.566036 O b'-1:word:fresh' | ||
| 480 | +-0.589166 O b'word[:2]:pH' | ||
| 481 | +-0.606308 Gtype b'isNumber' | ||
| 482 | +-0.608954 O b'-1:lemma:ml' | ||
| 483 | +-0.608954 O b'-1:word:ml' | ||
| 484 | +-0.636500 Air b'postag:NN' | ||
| 485 | +-0.644243 Air b'symb' | ||
| 486 | +-0.644631 O b'-1:lemma:sample' | ||
| 487 | +-0.645479 O b'word[:1]:K' | ||
| 488 | +-0.647685 O b'word[:2]:ri' | ||
| 489 | +-0.648673 Supp b'symb' | ||
| 490 | +-0.654648 Supp b'word[:1]:C' | ||
| 491 | +-0.655830 O b'word[:1]:N' | ||
| 492 | +-0.669514 O b'+1:postag:VBG' | ||
| 493 | +-0.678570 O b'lemma:rifampicin' | ||
| 494 | +-0.678570 O b'word:rifampicin' | ||
| 495 | +-0.685362 O b'+1:lemma:2.0' | ||
| 496 | +-0.685362 O b'+1:word:2.0' | ||
| 497 | +-0.697373 pH b'isLower' | ||
| 498 | +-0.723949 O b'+1:lemma:1' | ||
| 499 | +-0.723949 O b'+1:word:1' | ||
| 500 | +-0.725696 O b'word[:2]:30' | ||
| 501 | +-0.733745 O b'word[:1]:d' | ||
| 502 | +-0.746229 Technique b'postag:NN' | ||
| 503 | +-0.746793 Anti b'postag:NNP' | ||
| 504 | +-0.772686 Phase b'hUpper' | ||
| 505 | +-0.772686 Phase b'hLower' | ||
| 506 | +-0.779562 Supp b'+1:lemma:-lrb-' | ||
| 507 | +-0.779562 Supp b'+1:word:-LRB-' | ||
| 508 | +-0.785425 O b'lemma:wt' | ||
| 509 | +-0.793464 Supp b'+1:postag:-LRB-' | ||
| 510 | +-0.807612 O b'+1:lemma:in' | ||
| 511 | +-0.807612 O b'+1:word:in' | ||
| 512 | +-0.809771 O b'-1:lemma:2' | ||
| 513 | +-0.809771 O b'-1:word:2' | ||
| 514 | +-0.827384 O b'word[:2]:me' | ||
| 515 | +-0.843493 O b'word[:2]:fl' | ||
| 516 | +-0.892217 Temp b'+1:postag:IN' | ||
| 517 | +-0.911652 O b'word[:2]:ni' | ||
| 518 | +-0.928268 O b'-1:lemma:vol' | ||
| 519 | +-0.928268 O b'-1:word:vol' | ||
| 520 | +-0.929689 Gversion b'isLower' | ||
| 521 | +-0.937497 Phase b'-1:postag:JJ' | ||
| 522 | +-0.939661 Supp b'+1:lemma:,' | ||
| 523 | +-0.939661 Supp b'+1:postag:,' | ||
| 524 | +-0.939661 Supp b'+1:word:,' | ||
| 525 | +-0.945384 Supp b'hGreek' | ||
| 526 | +-1.033862 O b'+1:lemma:2' | ||
| 527 | +-1.033862 O b'+1:word:2' | ||
| 528 | +-1.049369 O b'postag:VBP' | ||
| 529 | +-1.064806 Gtype b'word[:1]:C' | ||
| 530 | +-1.103635 OD b'+1:postag:NN' | ||
| 531 | +-1.146336 Gtype b'isUpper' | ||
| 532 | +-1.184986 O b'-1:postag::' | ||
| 533 | +-1.221339 O b'word[:1]:P' | ||
| 534 | +-1.586036 O b'word[:2]:Ch' | ||
| 535 | +-1.596486 O b'-1:postag:VBG' | ||
| 536 | +-1.615380 O b'-1:lemma:_' | ||
| 537 | +-1.615380 O b'-1:word:_' | ||
| 538 | +-1.888889 O b'-1:lemma::' | ||
| 539 | +-1.888889 O b'-1:word::' | ||
| 540 | + |
CRF/reports/report_Run_4_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.10224977118326696, 'c2': 0.08574073868552615} | ||
| 5 | +best CV score:0.8625521557665096 | ||
| 6 | +model size: 0.15M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7911337627473737 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 1.000 0.621 0.766 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.880 0.776 0.825 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.820 0.784 0.802 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.847 0.749 0.791 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Supp -> Supp 4.853883 | ||
| 32 | +Med -> Med 4.656088 | ||
| 33 | +Temp -> Temp 4.510100 | ||
| 34 | +Agit -> Agit 4.465117 | ||
| 35 | +OD -> OD 4.340142 | ||
| 36 | +Anti -> Anti 4.196466 | ||
| 37 | +Air -> Air 3.821484 | ||
| 38 | +Gtype -> Gtype 3.782966 | ||
| 39 | +Gversion -> Gversion 3.606921 | ||
| 40 | +O -> O 3.495921 | ||
| 41 | +Phase -> Phase 3.323762 | ||
| 42 | +Technique -> Technique 2.563651 | ||
| 43 | +pH -> pH 2.180795 | ||
| 44 | +O -> Supp 0.898100 | ||
| 45 | +Substrain -> Gtype 0.754641 | ||
| 46 | +Air -> O 0.647741 | ||
| 47 | +O -> Technique 0.571928 | ||
| 48 | +O -> Gtype 0.481770 | ||
| 49 | +Supp -> O 0.402376 | ||
| 50 | +Gtype -> Supp 0.324453 | ||
| 51 | +Med -> O 0.307057 | ||
| 52 | +Technique -> Air 0.224294 | ||
| 53 | +Gtype -> Air 0.168729 | ||
| 54 | +O -> Anti 0.038118 | ||
| 55 | +O -> Temp 0.032123 | ||
| 56 | +Gtype -> pH 0.002908 | ||
| 57 | +Temp -> O 0.000361 | ||
| 58 | +Strain -> O 0.000160 | ||
| 59 | +Technique -> Gversion -0.000416 | ||
| 60 | +Air -> Agit -0.005831 | ||
| 61 | +Supp -> pH -0.007270 | ||
| 62 | +OD -> O -0.014197 | ||
| 63 | +Gversion -> Supp -0.015735 | ||
| 64 | +Gtype -> OD -0.028160 | ||
| 65 | +Supp -> Phase -0.029631 | ||
| 66 | +Anti -> Temp -0.035006 | ||
| 67 | +Phase -> Gtype -0.044350 | ||
| 68 | +OD -> Supp -0.044521 | ||
| 69 | +Gtype -> Temp -0.059821 | ||
| 70 | +Temp -> Med -0.060792 | ||
| 71 | +Gtype -> Phase -0.069441 | ||
| 72 | +OD -> Technique -0.077261 | ||
| 73 | +Air -> Technique -0.079069 | ||
| 74 | +O -> Agit -0.096763 | ||
| 75 | +Anti -> Supp -0.100222 | ||
| 76 | +Phase -> OD -0.103283 | ||
| 77 | +Supp -> Gversion -0.124409 | ||
| 78 | +Anti -> Air -0.126752 | ||
| 79 | +O -> OD -0.131232 | ||
| 80 | +Supp -> Anti -0.144899 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +OD -> O -0.014197 | ||
| 85 | +Gversion -> Supp -0.015735 | ||
| 86 | +Gtype -> OD -0.028160 | ||
| 87 | +Supp -> Phase -0.029631 | ||
| 88 | +Anti -> Temp -0.035006 | ||
| 89 | +Phase -> Gtype -0.044350 | ||
| 90 | +OD -> Supp -0.044521 | ||
| 91 | +Gtype -> Temp -0.059821 | ||
| 92 | +Temp -> Med -0.060792 | ||
| 93 | +Gtype -> Phase -0.069441 | ||
| 94 | +OD -> Technique -0.077261 | ||
| 95 | +Air -> Technique -0.079069 | ||
| 96 | +O -> Agit -0.096763 | ||
| 97 | +Anti -> Supp -0.100222 | ||
| 98 | +Phase -> OD -0.103283 | ||
| 99 | +Supp -> Gversion -0.124409 | ||
| 100 | +Anti -> Air -0.126752 | ||
| 101 | +O -> OD -0.131232 | ||
| 102 | +Supp -> Anti -0.144899 | ||
| 103 | +Agit -> Air -0.145881 | ||
| 104 | +Supp -> Air -0.148035 | ||
| 105 | +Anti -> Gtype -0.148967 | ||
| 106 | +Phase -> O -0.182539 | ||
| 107 | +Gtype -> Gversion -0.218235 | ||
| 108 | +Phase -> Supp -0.220677 | ||
| 109 | +Agit -> O -0.221526 | ||
| 110 | +Supp -> Technique -0.230155 | ||
| 111 | +Air -> Med -0.252173 | ||
| 112 | +Anti -> O -0.256819 | ||
| 113 | +Technique -> Supp -0.258507 | ||
| 114 | +Phase -> Technique -0.308300 | ||
| 115 | +O -> Med -0.322260 | ||
| 116 | +Air -> Phase -0.344611 | ||
| 117 | +OD -> Air -0.369099 | ||
| 118 | +Air -> Supp -0.381831 | ||
| 119 | +Technique -> OD -0.386625 | ||
| 120 | +Supp -> Gtype -0.423661 | ||
| 121 | +Gversion -> O -0.442929 | ||
| 122 | +Gtype -> Med -0.466529 | ||
| 123 | +Gtype -> Technique -0.486041 | ||
| 124 | +Air -> Temp -0.495035 | ||
| 125 | +Technique -> Gtype -0.512140 | ||
| 126 | +O -> Air -0.557928 | ||
| 127 | +Gtype -> Anti -0.639624 | ||
| 128 | +Supp -> Med -0.666805 | ||
| 129 | +Technique -> pH -0.687130 | ||
| 130 | +Technique -> O -0.804221 | ||
| 131 | +Gtype -> O -0.839737 | ||
| 132 | +Substrain -> O -1.005940 | ||
| 133 | +Med -> Supp -1.140134 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +2.992522 O b'postag:IN' | ||
| 138 | +2.933510 Gtype b'lemma[:1]:\xce\xb4' | ||
| 139 | +2.698175 O b'lemma:_' | ||
| 140 | +2.698175 O b'lemma[:1]:_' | ||
| 141 | +2.698175 O b'word:_' | ||
| 142 | +2.580892 Technique b'lemma[:2]:Ch' | ||
| 143 | +2.528828 Air b'lemma[:2]:an' | ||
| 144 | +2.520301 O b'postag::' | ||
| 145 | +2.475598 Air b'word:Aerobic' | ||
| 146 | +2.397019 O b'lemma[:2]:re' | ||
| 147 | +2.343308 O b'lemma:2' | ||
| 148 | +2.343308 O b'word:2' | ||
| 149 | +2.187375 OD b'lemma[:1]:o' | ||
| 150 | +2.132214 Air b'lemma:anaerobic' | ||
| 151 | +2.102690 O b'lemma:1' | ||
| 152 | +2.102690 O b'word:1' | ||
| 153 | +2.069208 Air b'postag:RB' | ||
| 154 | +2.011921 Supp b'-1:word:Cra' | ||
| 155 | +2.008921 O b'postag:CC' | ||
| 156 | +1.985815 O b'word:Cra' | ||
| 157 | +1.954962 O b'word:A' | ||
| 158 | +1.945886 O b'-1:lemma:tag' | ||
| 159 | +1.944651 Air b'lemma[:1]:a' | ||
| 160 | +1.942100 Gtype b'lemma[:1]:w' | ||
| 161 | +1.941658 O b'isLower' | ||
| 162 | +1.941416 O b'lemma:3' | ||
| 163 | +1.941416 O b'word:3' | ||
| 164 | +1.928794 Anti b'lemma[:2]:an' | ||
| 165 | +1.904875 O b'lemma:-' | ||
| 166 | +1.904875 O b'word:-' | ||
| 167 | +1.894461 Air b'lemma[:2]:ae' | ||
| 168 | +1.837551 Supp b'+1:lemma:\xc2\xb5m' | ||
| 169 | +1.837551 Supp b'+1:word:\xc2\xb5M' | ||
| 170 | +1.827021 O b'lemma:with' | ||
| 171 | +1.827021 O b'word:with' | ||
| 172 | +1.820722 O b'lemma:.' | ||
| 173 | +1.820722 O b'postag:.' | ||
| 174 | +1.820722 O b'word:.' | ||
| 175 | +1.782610 Phase b'lemma:mid-log' | ||
| 176 | +1.782610 Phase b'word:mid-log' | ||
| 177 | +1.757467 Technique b'lemma:chipseq' | ||
| 178 | +1.743523 Technique b'lemma[:1]:C' | ||
| 179 | +1.733249 Technique b'word:ChIPSeq' | ||
| 180 | +1.723058 O b'-1:word:tag' | ||
| 181 | +1.679894 Gtype b'lemma[:2]:pk' | ||
| 182 | +1.670517 Technique b'lemma[:2]:rn' | ||
| 183 | +1.646145 O b'lemma[:2]:ge' | ||
| 184 | +1.642888 Gtype b'word:WT' | ||
| 185 | +1.641812 Air b'word:Anaerobic' | ||
| 186 | +1.636107 Supp b'lemma:pq' | ||
| 187 | +1.636107 Supp b'lemma[:2]:pq' | ||
| 188 | +1.636107 Supp b'word:PQ' | ||
| 189 | +1.616520 Gtype b'lemma:wt' | ||
| 190 | +1.616520 Gtype b'lemma[:2]:wt' | ||
| 191 | +1.602692 Substrain b'lemma[:2]:mg' | ||
| 192 | +1.595791 Gtype b'symb' | ||
| 193 | +1.591226 Gtype b'hGreek' | ||
| 194 | +1.580745 Gtype b'lemma[:2]:ar' | ||
| 195 | +1.553690 O b'isNumber' | ||
| 196 | +1.549681 Supp b'-1:lemma:with' | ||
| 197 | +1.549681 Supp b'-1:word:with' | ||
| 198 | +1.538810 Med b'isUpper' | ||
| 199 | +1.524255 Supp b'lemma:Iron' | ||
| 200 | +1.524255 Supp b'lemma[:2]:Ir' | ||
| 201 | +1.524255 Supp b'word:Iron' | ||
| 202 | +1.524255 Supp b'+1:word:Deficient' | ||
| 203 | +1.523875 Med b'lemma[:1]:m' | ||
| 204 | +1.507350 Supp b'lemma:arginine' | ||
| 205 | +1.506721 O b'-1:word:Aerobic' | ||
| 206 | +1.504743 O b'lemma:b' | ||
| 207 | +1.504743 O b'word:B' | ||
| 208 | +1.503810 O b'+1:lemma:pq' | ||
| 209 | +1.503810 O b'+1:word:PQ' | ||
| 210 | +1.485328 Gtype b'lemma:arca8myc' | ||
| 211 | +1.485328 Gtype b'word:ArcA8myc' | ||
| 212 | +1.478520 Phase b'lemma[:2]:ex' | ||
| 213 | +1.477705 Supp b'-1:postag:CC' | ||
| 214 | +1.473033 Strain b'+1:lemma:substr' | ||
| 215 | +1.473033 Strain b'+1:word:substr' | ||
| 216 | +1.471852 O b'lemma[:1]:h' | ||
| 217 | +1.470534 Gtype b'lemma[:1]:f' | ||
| 218 | +1.432902 Technique b'word:ChIP-Seq' | ||
| 219 | +1.432272 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 220 | +1.432272 Gtype b'-1:word:\xe2\x88\x86' | ||
| 221 | +1.431861 Supp b'lemma:acetate' | ||
| 222 | +1.431861 Supp b'word:acetate' | ||
| 223 | +1.426205 pH b'+1:postag:CD' | ||
| 224 | +1.426130 O b'lemma:a' | ||
| 225 | +1.423474 Phase b'lemma[:1]:e' | ||
| 226 | +1.416394 Gtype b'lemma[:2]:cr' | ||
| 227 | +1.412091 O b'-1:lemma:lb' | ||
| 228 | +1.412091 O b'-1:word:LB' | ||
| 229 | +1.409559 O b'+1:postag:NNP' | ||
| 230 | +1.396235 Supp b'-1:lemma:Cra' | ||
| 231 | +1.391229 Technique b'lemma:ChIP-exo' | ||
| 232 | +1.387275 Supp b'lemma[:2]:gl' | ||
| 233 | +1.381222 O b'postag:VBN' | ||
| 234 | +1.357861 Technique b'lemma[:2]:ch' | ||
| 235 | +1.349464 O b'-1:lemma:ChIP-exo' | ||
| 236 | +1.337510 Supp b'lemma:rifampicin' | ||
| 237 | +1.337510 Supp b'word:rifampicin' | ||
| 238 | +1.333930 Supp b'lemma[:2]:ri' | ||
| 239 | +1.331717 Supp b'lemma[:2]:ni' | ||
| 240 | +1.308373 Air b'+1:postag:IN' | ||
| 241 | +1.302031 Gtype b'lemma[:2]:de' | ||
| 242 | +1.301579 Supp b'lemma[:1]:I' | ||
| 243 | +1.295057 Gtype b'lemma:type' | ||
| 244 | +1.295057 Gtype b'lemma[:2]:ty' | ||
| 245 | +1.295057 Gtype b'word:type' | ||
| 246 | +1.293141 Technique b'symb' | ||
| 247 | +1.290443 Air b'-1:lemma:ChIP-Seq' | ||
| 248 | +1.290443 Air b'-1:word:ChIP-Seq' | ||
| 249 | +1.286791 Gversion b'lemma[:2]:00' | ||
| 250 | +1.282084 pH b'lemma[:2]:ph' | ||
| 251 | +1.264843 Gversion b'word:ChIP-Seq' | ||
| 252 | +1.249803 Supp b'lemma[:2]:ac' | ||
| 253 | +1.237133 O b'postag:DT' | ||
| 254 | +1.232242 Gversion b'lemma:chip-seq' | ||
| 255 | +1.230130 Gversion b'-1:lemma:nc' | ||
| 256 | +1.230130 Gversion b'-1:word:NC' | ||
| 257 | +1.230000 O b'lemma:rpob' | ||
| 258 | +1.230000 O b'word:RpoB' | ||
| 259 | +1.206427 Air b'lemma:Aerobic' | ||
| 260 | +1.206427 Air b'lemma[:2]:Ae' | ||
| 261 | +1.198600 Technique b'-1:lemma:chip-exo' | ||
| 262 | +1.196166 Phase b'lemma:stationary' | ||
| 263 | +1.196166 Phase b'word:stationary' | ||
| 264 | +1.186607 Supp b'-1:lemma:vol' | ||
| 265 | +1.186607 Supp b'-1:word:vol' | ||
| 266 | +1.185194 Gtype b'-1:postag:VBG' | ||
| 267 | +1.185039 Gversion b'lemma:nc' | ||
| 268 | +1.185039 Gversion b'lemma[:2]:nc' | ||
| 269 | +1.185039 Gversion b'word:NC' | ||
| 270 | +1.183740 O b'-1:lemma:0.3' | ||
| 271 | +1.183740 O b'-1:word:0.3' | ||
| 272 | +1.183722 Substrain b'lemma[:1]:m' | ||
| 273 | +1.178060 Med b'lemma:MOPS' | ||
| 274 | +1.178060 Med b'lemma[:1]:M' | ||
| 275 | +1.178060 Med b'lemma[:2]:MO' | ||
| 276 | +1.178060 Med b'word:MOPS' | ||
| 277 | +1.176455 Agit b'+1:lemma:rpm' | ||
| 278 | +1.176455 Agit b'+1:word:rpm' | ||
| 279 | +1.173660 Air b'lemma[:1]:A' | ||
| 280 | +1.171020 O b'lemma[:1]:C' | ||
| 281 | +1.169586 O b'lemma:Custom' | ||
| 282 | +1.169586 O b'lemma[:2]:Cu' | ||
| 283 | +1.169586 O b'word:Custom' | ||
| 284 | +1.169290 Supp b'lemma[:1]:n' | ||
| 285 | +1.164574 O b'lemma[:1]:r' | ||
| 286 | +1.163122 O b'+1:word:were' | ||
| 287 | +1.161543 O b'+1:postag:RB' | ||
| 288 | +1.160553 Med b'+1:lemma:0.4' | ||
| 289 | +1.160553 Med b'+1:word:0.4' | ||
| 290 | +1.157301 Gtype b'lemma[:1]:t' | ||
| 291 | +1.139447 O b'-1:lemma:glucose' | ||
| 292 | +1.139447 O b'-1:word:glucose' | ||
| 293 | +1.136363 Gtype b'lemma[:1]:W' | ||
| 294 | +1.123777 Gversion b'lemma:asm584v2' | ||
| 295 | +1.123777 Gversion b'word:ASM584v2' | ||
| 296 | +1.122043 Gversion b'lemma[:2]:as' | ||
| 297 | +1.119834 Technique b'word:ChIP-exo' | ||
| 298 | +1.116571 Supp b'+1:lemma:1' | ||
| 299 | +1.116571 Supp b'+1:word:1' | ||
| 300 | +1.109080 O b'-1:lemma:anaerobic' | ||
| 301 | +1.107414 O b'lemma:ompr' | ||
| 302 | +1.107414 O b'word:OmpR' | ||
| 303 | +1.104893 Gtype b'+1:lemma:type' | ||
| 304 | +1.104893 Gtype b'+1:word:type' | ||
| 305 | +1.101638 O b'lemma:chip' | ||
| 306 | +1.101186 Temp b'isUpper' | ||
| 307 | +1.098068 Gtype b'lemma:nsrr' | ||
| 308 | +1.098068 Gtype b'lemma[:2]:ns' | ||
| 309 | +1.098068 Gtype b'word:NsrR' | ||
| 310 | +1.097533 Strain b'lemma:k-12' | ||
| 311 | +1.097533 Strain b'lemma[:2]:k-' | ||
| 312 | +1.097533 Strain b'word:K-12' | ||
| 313 | +1.094717 Agit b'lemma:rpm' | ||
| 314 | +1.094717 Agit b'word:rpm' | ||
| 315 | +1.093697 Anti b'+1:lemma:antibody' | ||
| 316 | +1.093697 Anti b'+1:word:antibody' | ||
| 317 | +1.090349 Supp b'-1:lemma:+' | ||
| 318 | +1.090349 Supp b'-1:word:+' | ||
| 319 | +1.089812 Med b'lemma:broth' | ||
| 320 | +1.089812 Med b'-1:lemma:L' | ||
| 321 | +1.089812 Med b'lemma[:2]:br' | ||
| 322 | +1.089812 Med b'word:broth' | ||
| 323 | +1.089812 Med b'-1:word:L' | ||
| 324 | +1.089439 O b'lemma[:1]:s' | ||
| 325 | +1.089354 Supp b'lemma:glucose' | ||
| 326 | +1.089354 Supp b'word:glucose' | ||
| 327 | +1.075102 Gtype b'-1:lemma:_' | ||
| 328 | +1.075102 Gtype b'-1:word:_' | ||
| 329 | +1.074174 OD b'-1:postag:IN' | ||
| 330 | +1.069035 Air b'-1:lemma:-' | ||
| 331 | +1.069035 Air b'-1:word:-' | ||
| 332 | +1.064267 O b'lemma[:2]:om' | ||
| 333 | +1.059425 Med b'-1:lemma:ml' | ||
| 334 | +1.059425 Med b'-1:word:ml' | ||
| 335 | +1.055151 O b'lemma[:2]:ga' | ||
| 336 | +1.051054 Temp b'isNumber' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.269566 Med b'+1:postag:NN' | ||
| 341 | +-0.271003 O b'+1:word:C' | ||
| 342 | +-0.272991 Gtype b'lemma[:1]:g' | ||
| 343 | +-0.281915 Substrain b'isLower' | ||
| 344 | +-0.285097 Supp b'+1:lemma:acetate' | ||
| 345 | +-0.285097 Supp b'+1:word:acetate' | ||
| 346 | +-0.289196 O b'-1:lemma:control' | ||
| 347 | +-0.289196 O b'-1:word:control' | ||
| 348 | +-0.291783 O b'lemma:30' | ||
| 349 | +-0.291783 O b'word:30' | ||
| 350 | +-0.296669 Supp b'+1:lemma:nacl' | ||
| 351 | +-0.296669 Supp b'+1:word:NaCl' | ||
| 352 | +-0.299139 Gtype b'lemma[:2]:rp' | ||
| 353 | +-0.299802 Supp b'lemma[:1]:a' | ||
| 354 | +-0.300346 Supp b'isNumber' | ||
| 355 | +-0.302212 Anti b'+1:lemma:anti-fur' | ||
| 356 | +-0.302212 Anti b'+1:word:anti-Fur' | ||
| 357 | +-0.302389 O b'+1:lemma:rep2' | ||
| 358 | +-0.302389 O b'+1:word:rep2' | ||
| 359 | +-0.302698 O b'lemma:methanol' | ||
| 360 | +-0.302698 O b'word:methanol' | ||
| 361 | +-0.303420 Supp b'+1:lemma:fructose' | ||
| 362 | +-0.303420 Supp b'+1:word:fructose' | ||
| 363 | +-0.305531 O b'lemma:aerobically' | ||
| 364 | +-0.305531 O b'word:aerobically' | ||
| 365 | +-0.306175 pH b'isNumber' | ||
| 366 | +-0.306838 O b'lemma[:1]:d' | ||
| 367 | +-0.308262 Gtype b'+1:lemma:-rrb-' | ||
| 368 | +-0.308262 Gtype b'+1:word:-RRB-' | ||
| 369 | +-0.312558 O b'-1:lemma:mm' | ||
| 370 | +-0.312558 O b'-1:word:mM' | ||
| 371 | +-0.313202 O b'-1:postag:-LRB-' | ||
| 372 | +-0.317810 O b'lemma:of' | ||
| 373 | +-0.317810 O b'lemma[:2]:of' | ||
| 374 | +-0.317810 O b'word:of' | ||
| 375 | +-0.319439 O b'-1:lemma:final' | ||
| 376 | +-0.319439 O b'-1:word:final' | ||
| 377 | +-0.321317 O b'lemma:anaerobically' | ||
| 378 | +-0.321317 O b'word:anaerobically' | ||
| 379 | +-0.325460 O b'lemma[:1]:L' | ||
| 380 | +-0.330481 O b'lemma[:1]:A' | ||
| 381 | +-0.332032 O b'+1:lemma:at' | ||
| 382 | +-0.332032 O b'+1:word:at' | ||
| 383 | +-0.333829 OD b'hUpper' | ||
| 384 | +-0.333829 OD b'hLower' | ||
| 385 | +-0.334342 O b'lemma[:1]:\xce\xb4' | ||
| 386 | +-0.338105 O b'-1:lemma:37' | ||
| 387 | +-0.338105 O b'-1:word:37' | ||
| 388 | +-0.345520 O b'lemma[:1]:4' | ||
| 389 | +-0.346277 Vess b'hUpper' | ||
| 390 | +-0.346277 Vess b'hLower' | ||
| 391 | +-0.351779 O b'-1:lemma:cra' | ||
| 392 | +-0.354108 Supp b'-1:lemma:-lrb-' | ||
| 393 | +-0.354108 Supp b'-1:word:-LRB-' | ||
| 394 | +-0.354176 O b'lemma:0.3' | ||
| 395 | +-0.354176 O b'word:0.3' | ||
| 396 | +-0.357826 O b'+1:lemma:1m' | ||
| 397 | +-0.357826 O b'+1:word:1M' | ||
| 398 | +-0.365975 O b'-1:lemma:rpob' | ||
| 399 | +-0.365975 O b'-1:word:RpoB' | ||
| 400 | +-0.369791 Supp b'lemma[:2]:an' | ||
| 401 | +-0.382535 Technique b'-1:postag::' | ||
| 402 | +-0.385806 O b'-1:lemma:ph' | ||
| 403 | +-0.385806 O b'-1:word:pH' | ||
| 404 | +-0.390600 Strain b'isLower' | ||
| 405 | +-0.390996 Med b'+1:postag:IN' | ||
| 406 | +-0.397681 Technique b'isUpper' | ||
| 407 | +-0.402341 O b'lemma[:2]:ph' | ||
| 408 | +-0.407916 O b'-1:lemma:nsrr' | ||
| 409 | +-0.407916 O b'-1:word:NsrR' | ||
| 410 | +-0.408181 pH b'isUpper' | ||
| 411 | +-0.408383 O b'lemma[:1]:p' | ||
| 412 | +-0.410419 O b'-1:lemma:dissolve' | ||
| 413 | +-0.410419 O b'+1:lemma:methanol' | ||
| 414 | +-0.410419 O b'-1:word:dissolved' | ||
| 415 | +-0.410419 O b'+1:word:methanol' | ||
| 416 | +-0.411632 O b'+1:lemma:until' | ||
| 417 | +-0.411632 O b'+1:word:until' | ||
| 418 | +-0.422310 O b'+1:postag:IN' | ||
| 419 | +-0.422805 O b'lemma:wt' | ||
| 420 | +-0.422805 O b'lemma[:2]:wt' | ||
| 421 | +-0.429703 Air b'-1:lemma:or' | ||
| 422 | +-0.429703 Air b'-1:word:or' | ||
| 423 | +-0.430609 O b'lemma:soxs-8myc' | ||
| 424 | +-0.430609 O b'word:soxS-8myc' | ||
| 425 | +-0.437708 O b'word:cells' | ||
| 426 | +-0.439438 Supp b'-1:postag:-LRB-' | ||
| 427 | +-0.443616 O b'lemma[:2]:mg' | ||
| 428 | +-0.447807 O b'-1:postag:IN' | ||
| 429 | +-0.454881 Technique b'postag:NN' | ||
| 430 | +-0.455283 O b'-1:lemma:30' | ||
| 431 | +-0.455283 O b'-1:word:30' | ||
| 432 | +-0.455942 Med b'-1:postag:CD' | ||
| 433 | +-0.456974 O b'-1:lemma:chip-exo' | ||
| 434 | +-0.463642 O b'lemma:2h' | ||
| 435 | +-0.463642 O b'-1:lemma:additional' | ||
| 436 | +-0.463642 O b'lemma[:2]:2h' | ||
| 437 | +-0.463642 O b'word:2h' | ||
| 438 | +-0.463642 O b'-1:word:additional' | ||
| 439 | +-0.463824 O b'lemma[:2]:ni' | ||
| 440 | +-0.473738 O b'-1:lemma:\xe2\x88\x86' | ||
| 441 | +-0.473738 O b'-1:word:\xe2\x88\x86' | ||
| 442 | +-0.483472 Air b'-1:postag:JJ' | ||
| 443 | +-0.485640 O b'lemma[:1]:k' | ||
| 444 | +-0.489700 Agit b'symb' | ||
| 445 | +-0.491876 O b'lemma[:2]:gl' | ||
| 446 | +-0.493145 O b'-1:lemma:1' | ||
| 447 | +-0.493145 O b'-1:word:1' | ||
| 448 | +-0.493324 Supp b'lemma[:1]:s' | ||
| 449 | +-0.495721 O b'-1:lemma:until' | ||
| 450 | +-0.495721 O b'-1:word:until' | ||
| 451 | +-0.510059 O b'+1:word:ChIP-exo' | ||
| 452 | +-0.532260 Supp b'-1:postag:NNP' | ||
| 453 | +-0.532617 O b'lemma:mid-log' | ||
| 454 | +-0.532617 O b'word:mid-log' | ||
| 455 | +-0.538747 O b'lemma[:2]:ar' | ||
| 456 | +-0.539864 Temp b'postag:NN' | ||
| 457 | +-0.544326 Gtype b'postag::' | ||
| 458 | +-0.550034 O b'lemma[:1]:n' | ||
| 459 | +-0.552433 Technique b'isNumber' | ||
| 460 | +-0.552875 O b'-1:lemma:co2' | ||
| 461 | +-0.552875 O b'-1:word:CO2' | ||
| 462 | +-0.553836 O b'+1:lemma:mm' | ||
| 463 | +-0.553836 O b'+1:word:mM' | ||
| 464 | +-0.575360 Agit b'hUpper' | ||
| 465 | +-0.575360 Agit b'hLower' | ||
| 466 | +-0.587589 O b'+1:lemma:2.0' | ||
| 467 | +-0.587589 O b'+1:word:2.0' | ||
| 468 | +-0.589156 Air b'symb' | ||
| 469 | +-0.593266 O b'-1:lemma:IP' | ||
| 470 | +-0.593266 O b'-1:word:IP' | ||
| 471 | +-0.606709 O b'+1:lemma:+' | ||
| 472 | +-0.606709 O b'+1:word:+' | ||
| 473 | +-0.623013 O b'word:ChIP-exo' | ||
| 474 | +-0.624809 Med b'-1:postag:IN' | ||
| 475 | +-0.644672 Med b'symb' | ||
| 476 | +-0.652610 O b'lemma[:2]:an' | ||
| 477 | +-0.663037 O b'+1:postag:VBG' | ||
| 478 | +-0.669924 Air b'isLower' | ||
| 479 | +-0.670219 O b'+1:lemma:g/l' | ||
| 480 | +-0.670219 O b'+1:word:g/L' | ||
| 481 | +-0.695683 pH b'isLower' | ||
| 482 | +-0.700730 O b'-1:lemma:ml' | ||
| 483 | +-0.700730 O b'-1:word:ml' | ||
| 484 | +-0.708528 Technique b'isLower' | ||
| 485 | +-0.713532 Gtype b'lemma[:1]:c' | ||
| 486 | +-0.723267 O b'postag:VBP' | ||
| 487 | +-0.726763 Med b'-1:postag:NN' | ||
| 488 | +-0.730007 O b'-1:lemma:fresh' | ||
| 489 | +-0.730007 O b'-1:word:fresh' | ||
| 490 | +-0.732472 Gtype b'isNumber' | ||
| 491 | +-0.754791 Anti b'postag:NNP' | ||
| 492 | +-0.763751 O b'lemma[:1]:I' | ||
| 493 | +-0.765472 Phase b'hUpper' | ||
| 494 | +-0.765472 Phase b'hLower' | ||
| 495 | +-0.777034 O b'postag:RB' | ||
| 496 | +-0.783888 O b'+1:lemma:1' | ||
| 497 | +-0.783888 O b'+1:word:1' | ||
| 498 | +-0.819356 Supp b'+1:postag:VBN' | ||
| 499 | +-0.832076 Supp b'+1:postag:-LRB-' | ||
| 500 | +-0.834887 Supp b'+1:lemma:-lrb-' | ||
| 501 | +-0.834887 Supp b'+1:word:-LRB-' | ||
| 502 | +-0.845588 O b'lemma[:2]:ri' | ||
| 503 | +-0.859382 O b'+1:lemma:in' | ||
| 504 | +-0.859382 O b'+1:word:in' | ||
| 505 | +-0.863969 O b'-1:lemma:2' | ||
| 506 | +-0.863969 O b'-1:word:2' | ||
| 507 | +-0.863985 Supp b'postag:JJ' | ||
| 508 | +-0.879910 O b'lemma:rifampicin' | ||
| 509 | +-0.879910 O b'word:rifampicin' | ||
| 510 | +-0.890013 O b'-1:lemma:sample' | ||
| 511 | +-0.908122 O b'lemma[:2]:me' | ||
| 512 | +-0.918685 O b'lemma[:2]:30' | ||
| 513 | +-0.977725 Supp b'symb' | ||
| 514 | +-0.998621 Gtype b'lemma[:1]:a' | ||
| 515 | +-1.009514 O b'lemma[:2]:ae' | ||
| 516 | +-1.010867 Supp b'lemma[:1]:c' | ||
| 517 | +-1.019909 Supp b'hGreek' | ||
| 518 | +-1.025689 Gversion b'isLower' | ||
| 519 | +-1.028787 O b'-1:postag::' | ||
| 520 | +-1.033347 Gtype b'lemma[:1]:r' | ||
| 521 | +-1.058669 Phase b'postag:JJ' | ||
| 522 | +-1.063118 OD b'+1:postag:NN' | ||
| 523 | +-1.085470 O b'+1:lemma:2' | ||
| 524 | +-1.085470 O b'+1:word:2' | ||
| 525 | +-1.097595 Temp b'+1:postag:IN' | ||
| 526 | +-1.104571 O b'-1:lemma:vol' | ||
| 527 | +-1.104571 O b'-1:word:vol' | ||
| 528 | +-1.105747 Phase b'-1:postag:JJ' | ||
| 529 | +-1.193803 Supp b'+1:lemma:,' | ||
| 530 | +-1.193803 Supp b'+1:postag:,' | ||
| 531 | +-1.193803 Supp b'+1:word:,' | ||
| 532 | +-1.225152 Gtype b'isUpper' | ||
| 533 | +-1.342867 Air b'postag:NN' | ||
| 534 | +-1.648816 O b'-1:postag:VBG' | ||
| 535 | +-1.734459 O b'-1:lemma:_' | ||
| 536 | +-1.734459 O b'-1:word:_' | ||
| 537 | +-1.809222 O b'lemma[:2]:fl' | ||
| 538 | +-2.034354 O b'-1:lemma::' | ||
| 539 | +-2.034354 O b'-1:word::' | ||
| 540 | + |
CRF/reports/report_Run_5_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.08547853139018363, 'c2': 0.0718223925603791} | ||
| 5 | +best CV score:0.8618282789423788 | ||
| 6 | +model size: 0.12M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7935612512742225 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.870 0.930 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.828 0.906 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.545 0.348 0.425 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.847 0.847 0.847 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.764 0.799 0.781 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.825 0.772 0.794 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 4.726292 | ||
| 32 | +Med -> Med 4.671738 | ||
| 33 | +Supp -> Supp 4.522188 | ||
| 34 | +Agit -> Agit 4.377673 | ||
| 35 | +OD -> OD 4.308572 | ||
| 36 | +Gversion -> Gversion 3.866864 | ||
| 37 | +O -> O 3.748552 | ||
| 38 | +Air -> Air 3.677475 | ||
| 39 | +Anti -> Anti 3.637881 | ||
| 40 | +Phase -> Phase 3.501884 | ||
| 41 | +Gtype -> Gtype 3.413911 | ||
| 42 | +Technique -> Technique 2.611020 | ||
| 43 | +pH -> pH 2.492174 | ||
| 44 | +Substrain -> Gtype 1.323299 | ||
| 45 | +O -> Supp 1.082471 | ||
| 46 | +Gtype -> Supp 1.059136 | ||
| 47 | +Air -> O 1.056595 | ||
| 48 | +O -> Technique 0.788425 | ||
| 49 | +Gtype -> Air 0.726982 | ||
| 50 | +Supp -> O 0.721855 | ||
| 51 | +Technique -> Air 0.676898 | ||
| 52 | +Med -> O 0.566862 | ||
| 53 | +Temp -> O 0.505913 | ||
| 54 | +Gtype -> pH 0.499557 | ||
| 55 | +O -> Gtype 0.492671 | ||
| 56 | +O -> Temp 0.193445 | ||
| 57 | +OD -> O 0.066099 | ||
| 58 | +O -> Phase 0.015467 | ||
| 59 | +Phase -> O 0.005269 | ||
| 60 | +O -> Anti 0.001662 | ||
| 61 | +O -> Med 0.000880 | ||
| 62 | +Phase -> Technique -0.000017 | ||
| 63 | +Gversion -> Technique -0.000081 | ||
| 64 | +Supp -> Gversion -0.001487 | ||
| 65 | +Supp -> Temp -0.006942 | ||
| 66 | +Anti -> Air -0.014046 | ||
| 67 | +OD -> Med -0.020526 | ||
| 68 | +Air -> Temp -0.030082 | ||
| 69 | +O -> Strain -0.036678 | ||
| 70 | +Strain -> Supp -0.037261 | ||
| 71 | +Anti -> Technique -0.039379 | ||
| 72 | +O -> Agit -0.039632 | ||
| 73 | +Anti -> O -0.064909 | ||
| 74 | +Med -> Gtype -0.069251 | ||
| 75 | +Gversion -> Air -0.073290 | ||
| 76 | +Supp -> Anti -0.079850 | ||
| 77 | +Air -> Phase -0.086231 | ||
| 78 | +Gtype -> Agit -0.087068 | ||
| 79 | +Technique -> Med -0.107591 | ||
| 80 | +Temp -> Supp -0.117927 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Gtype -> Agit -0.087068 | ||
| 85 | +Technique -> Med -0.107591 | ||
| 86 | +Temp -> Supp -0.117927 | ||
| 87 | +Phase -> Med -0.126236 | ||
| 88 | +Agit -> Supp -0.127001 | ||
| 89 | +Air -> Technique -0.146743 | ||
| 90 | +Gtype -> Phase -0.148852 | ||
| 91 | +Gversion -> O -0.153972 | ||
| 92 | +Temp -> Air -0.155016 | ||
| 93 | +Gversion -> Gtype -0.163400 | ||
| 94 | +Supp -> pH -0.165945 | ||
| 95 | +Technique -> OD -0.170573 | ||
| 96 | +Gtype -> OD -0.180802 | ||
| 97 | +Supp -> OD -0.185729 | ||
| 98 | +Agit -> O -0.186520 | ||
| 99 | +Gtype -> Temp -0.191678 | ||
| 100 | +Temp -> Med -0.203334 | ||
| 101 | +Anti -> Med -0.213478 | ||
| 102 | +Med -> Air -0.254265 | ||
| 103 | +Supp -> Phase -0.272052 | ||
| 104 | +O -> OD -0.284249 | ||
| 105 | +Air -> Agit -0.299878 | ||
| 106 | +Gtype -> Gversion -0.302074 | ||
| 107 | +Technique -> O -0.304509 | ||
| 108 | +Supp -> Technique -0.323807 | ||
| 109 | +Gversion -> Supp -0.330543 | ||
| 110 | +OD -> Supp -0.332686 | ||
| 111 | +Supp -> Air -0.350244 | ||
| 112 | +Agit -> Air -0.351443 | ||
| 113 | +Air -> Med -0.356425 | ||
| 114 | +pH -> Supp -0.356600 | ||
| 115 | +Phase -> Supp -0.367295 | ||
| 116 | +Anti -> Supp -0.388606 | ||
| 117 | +Anti -> Gtype -0.420057 | ||
| 118 | +Gtype -> Anti -0.437171 | ||
| 119 | +Gtype -> O -0.469909 | ||
| 120 | +Air -> Gtype -0.491506 | ||
| 121 | +Air -> Supp -0.517679 | ||
| 122 | +Supp -> Gtype -0.551144 | ||
| 123 | +Technique -> Supp -0.555659 | ||
| 124 | +OD -> Air -0.572756 | ||
| 125 | +Gtype -> Technique -0.574688 | ||
| 126 | +O -> Air -0.585607 | ||
| 127 | +Phase -> OD -0.592622 | ||
| 128 | +Technique -> pH -0.602711 | ||
| 129 | +Supp -> Med -0.656480 | ||
| 130 | +Gtype -> Med -0.782031 | ||
| 131 | +Substrain -> O -1.224113 | ||
| 132 | +Technique -> Gtype -1.370410 | ||
| 133 | +Med -> Supp -1.466233 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +4.763784 O b'lemma:2' | ||
| 138 | +4.403357 O b'lemma:1' | ||
| 139 | +4.351529 O b'lemma:_' | ||
| 140 | +4.235059 Anti b'-2:lemma:antibody' | ||
| 141 | +4.043801 O b'-2:lemma:_' | ||
| 142 | +3.996162 Air b'lemma:anaerobic' | ||
| 143 | +3.806351 Gtype b'lemma:wt' | ||
| 144 | +3.749108 O b'postag:IN' | ||
| 145 | +3.736227 Supp b'lemma:pq' | ||
| 146 | +3.494745 Air b'lemma:Aerobic' | ||
| 147 | +3.463151 Technique b'lemma:ChIP-exo' | ||
| 148 | +3.331237 Technique b'lemma:chipseq' | ||
| 149 | +3.321703 Phase b'lemma:mid-log' | ||
| 150 | +3.250497 Gtype b'lemma:\xce\xb4cra' | ||
| 151 | +3.170468 Supp b'lemma:acetate' | ||
| 152 | +3.124411 O b'lemma:3' | ||
| 153 | +3.062209 O b'lemma:rpob' | ||
| 154 | +3.054282 Phase b'-2:lemma:phase' | ||
| 155 | +3.044351 Gtype b'lemma:\xe2\x88\x86' | ||
| 156 | +2.982673 O b'postag::' | ||
| 157 | +2.975009 O b'-2:lemma:flagtag' | ||
| 158 | +2.948451 Gtype b'-2:lemma:genotype/variation' | ||
| 159 | +2.880650 O b'postag:VBN' | ||
| 160 | +2.875525 O b'lemma:.' | ||
| 161 | +2.875525 O b'postag:.' | ||
| 162 | +2.856618 O b'lemma:-' | ||
| 163 | +2.842211 Technique b'lemma:rna-seq' | ||
| 164 | +2.822332 O b'lemma:b' | ||
| 165 | +2.802827 Gtype b'lemma:type' | ||
| 166 | +2.797366 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 167 | +2.793829 Supp b'lemma:glucose' | ||
| 168 | +2.734817 Gtype b'-2:lemma:genotype' | ||
| 169 | +2.701420 Supp b'lemma:no3' | ||
| 170 | +2.661946 Air b'lemma:aerobic' | ||
| 171 | +2.652084 Technique b'lemma:chip-seq' | ||
| 172 | +2.649025 O b'lemma:Cra' | ||
| 173 | +2.638351 Air b'postag:RB' | ||
| 174 | +2.590966 O b'-1:lemma:ChIP-exo' | ||
| 175 | +2.579299 Supp b'lemma:Iron' | ||
| 176 | +2.579299 Supp b'-2:lemma:Anaerobic' | ||
| 177 | +2.569436 O b'lemma:a' | ||
| 178 | +2.546577 Med b'lemma:lb' | ||
| 179 | +2.511450 Supp b'-1:lemma:with' | ||
| 180 | +2.503214 Supp b'lemma:nacl' | ||
| 181 | +2.478452 Substrain b'lemma:mg1655' | ||
| 182 | +2.473536 Technique b'+2:lemma:ph5' | ||
| 183 | +2.456529 Supp b'+1:lemma:1' | ||
| 184 | +2.452327 O b'postag:CC' | ||
| 185 | +2.423475 Gtype b'lemma:\xce\xb4fur' | ||
| 186 | +2.368070 Gtype b'lemma:\xce\xb4soxr' | ||
| 187 | +2.360449 Gtype b'lemma:wild-type' | ||
| 188 | +2.352917 Supp b'lemma:nh4cl' | ||
| 189 | +2.349539 O b'+2:lemma:\xc2\xb0c' | ||
| 190 | +2.337254 Med b'lemma:MOPS' | ||
| 191 | +2.321526 Gtype b'lemma:flag-tag' | ||
| 192 | +2.321526 Gtype b'-1:lemma:c-terminal' | ||
| 193 | +2.314837 O b'lemma:CEL' | ||
| 194 | +2.294955 Gtype b'+1:lemma:with' | ||
| 195 | +2.257644 Gtype b'+1:lemma:type' | ||
| 196 | +2.196496 Supp b'+2:lemma:iptg' | ||
| 197 | +2.196469 Supp b'-1:lemma:Cra' | ||
| 198 | +2.175786 Phase b'-1:lemma:mid-log' | ||
| 199 | +2.173685 O b'postag:VBG' | ||
| 200 | +2.163806 pH b'+1:postag:CD' | ||
| 201 | +2.100627 O b'lemma:with' | ||
| 202 | +2.088770 Gversion b'lemma:chip-seq' | ||
| 203 | +2.085539 O b'-1:lemma:tag' | ||
| 204 | +2.069738 O b'lemma:rep2' | ||
| 205 | +2.069674 Supp b'+1:lemma:\xc2\xb5m' | ||
| 206 | +2.060929 O b'lemma:harbor' | ||
| 207 | +2.060390 Temp b'+1:lemma:\xc2\xb0c' | ||
| 208 | +2.022385 Supp b'lemma:nitrate' | ||
| 209 | +1.998316 pH b'lemma:ph5' | ||
| 210 | +1.998316 pH b'+1:lemma:.5' | ||
| 211 | +1.988849 Air b'-1:lemma:ChIP-Seq' | ||
| 212 | +1.977405 Med b'lemma:m63' | ||
| 213 | +1.976213 Temp b'lemma:\xc2\xb0c' | ||
| 214 | +1.971324 Gtype b'lemma:dfnr' | ||
| 215 | +1.969127 O b'+1:lemma:arca-8myc' | ||
| 216 | +1.955303 O b'-1:lemma:0.3' | ||
| 217 | +1.951821 O b'-2:lemma:medium' | ||
| 218 | +1.942893 Supp b'+1:lemma:_' | ||
| 219 | +1.937510 Gtype b'-2:lemma:affyexp' | ||
| 220 | +1.929115 Air b'-2:lemma:IP' | ||
| 221 | +1.905706 Substrain b'+1:lemma:phtpg' | ||
| 222 | +1.898318 Supp b'+1:lemma:2' | ||
| 223 | +1.895488 Technique b'lemma:rnaseq' | ||
| 224 | +1.881491 Supp b'lemma:arginine' | ||
| 225 | +1.871246 Technique b'-2:lemma:Fur' | ||
| 226 | +1.871212 Med b'+2:lemma:b2' | ||
| 227 | +1.868278 Substrain b'-2:lemma:substr' | ||
| 228 | +1.833742 Gtype b'lemma:nsrr' | ||
| 229 | +1.826714 O b'-1:lemma:media' | ||
| 230 | +1.824754 O b'-1:lemma:anaerobic' | ||
| 231 | +1.808509 Supp b'-2:lemma:agent' | ||
| 232 | +1.807657 O b'+1:postag:RB' | ||
| 233 | +1.807328 Gtype b'-1:lemma:rpob' | ||
| 234 | +1.803500 O b'postag:NNS' | ||
| 235 | +1.797656 Technique b'lemma:ChIP-Seq' | ||
| 236 | +1.773838 O b'lemma:chip' | ||
| 237 | +1.773424 Strain b'+1:lemma:substr' | ||
| 238 | +1.773424 Strain b'-2:lemma:str' | ||
| 239 | +1.772977 O b'-1:lemma:glucose' | ||
| 240 | +1.769253 Anti b'+1:lemma:antibody' | ||
| 241 | +1.768929 Gversion b'lemma:.2' | ||
| 242 | +1.768929 Gversion b'-1:lemma:u00096' | ||
| 243 | +1.753884 O b'lemma:\xcf\x8332' | ||
| 244 | +1.753283 O b'-2:lemma:myc' | ||
| 245 | +1.752434 Anti b'+2:lemma:antibody' | ||
| 246 | +1.746191 Gtype b'lemma:pk4854' | ||
| 247 | +1.745489 Technique b'-1:lemma:IP' | ||
| 248 | +1.733914 Supp b'lemma:Leu' | ||
| 249 | +1.733914 Supp b'-2:lemma:Lrp' | ||
| 250 | +1.720315 O b'postag:DT' | ||
| 251 | +1.720167 Strain b'lemma:k-12' | ||
| 252 | +1.714367 Med b'+2:postag:CC' | ||
| 253 | +1.702196 Gtype b'-2:lemma:delta' | ||
| 254 | +1.700861 O b'lemma:argr' | ||
| 255 | +1.699626 O b'+2:postag:JJ' | ||
| 256 | +1.699572 O b'lemma:affyexp' | ||
| 257 | +1.698615 Air b'-1:lemma:-' | ||
| 258 | +1.698323 Air b'lemma:anaeroibc' | ||
| 259 | +1.697509 Temp b'lemma:43' | ||
| 260 | +1.686900 Supp b'lemma:Adenine' | ||
| 261 | +1.667205 O b'lemma:soxs' | ||
| 262 | +1.667205 O b'lemma:soxr' | ||
| 263 | +1.665708 Supp b'lemma:fructose' | ||
| 264 | +1.663126 O b'lemma:ompr' | ||
| 265 | +1.657174 O b'lemma:purr' | ||
| 266 | +1.642276 Technique b'-1:lemma:chip-exo' | ||
| 267 | +1.640609 Gtype b'+1:lemma:ph5' | ||
| 268 | +1.640609 Gtype b'+2:lemma:.5' | ||
| 269 | +1.635130 Temp b'-1:lemma:43' | ||
| 270 | +1.629117 Med b'+1:lemma:0.4' | ||
| 271 | +1.624603 Supp b'-1:postag:CC' | ||
| 272 | +1.623648 O b'+1:lemma:pq' | ||
| 273 | +1.620057 Med b'-1:lemma:in' | ||
| 274 | +1.607167 Technique b'-1:lemma:_' | ||
| 275 | +1.597588 Technique b'-2:lemma:wt' | ||
| 276 | +1.594913 Med b'lemma:minimal' | ||
| 277 | +1.582538 Temp b'-2:lemma:\xcf\x8332' | ||
| 278 | +1.579977 Gversion b'-2:lemma:nc' | ||
| 279 | +1.577928 O b'-1:lemma:\xc2\xb0c' | ||
| 280 | +1.574442 O b'+1:lemma:wt' | ||
| 281 | +1.571857 Supp b'-1:lemma:+' | ||
| 282 | +1.571133 O b'lemma:trpr' | ||
| 283 | +1.568931 O b'lemma:culture' | ||
| 284 | +1.568914 O b'lemma:genotype/variation' | ||
| 285 | +1.567478 Technique b'-1:lemma:input' | ||
| 286 | +1.560894 O b'+1:postag:NNP' | ||
| 287 | +1.559633 O b'-1:lemma:lb' | ||
| 288 | +1.558911 Gtype b'lemma:\xce\xb4ompr' | ||
| 289 | +1.557164 Phase b'+1:lemma:phase' | ||
| 290 | +1.552494 O b'+2:lemma:cra' | ||
| 291 | +1.551712 Supp b'-2:lemma:for' | ||
| 292 | +1.548775 Gtype b'+2:lemma:glucose' | ||
| 293 | +1.548228 Med b'lemma:media' | ||
| 294 | +1.546489 Supp b'lemma:rifampicin' | ||
| 295 | +1.538993 Air b'lemma:anaerobically' | ||
| 296 | +1.538769 Gtype b'lemma:\xce\xb4oxyr' | ||
| 297 | +1.527888 Gversion b'lemma:u00096' | ||
| 298 | +1.527888 Gversion b'+1:lemma:.2' | ||
| 299 | +1.510740 Phase b'lemma:exponential' | ||
| 300 | +1.510740 Phase b'lemma:stationary' | ||
| 301 | +1.504271 O b'+1:lemma:chip-seq' | ||
| 302 | +1.500405 Gversion b'-2:lemma:build' | ||
| 303 | +1.494395 Gtype b'lemma:ptac' | ||
| 304 | +1.491733 O b'-1:lemma:Aerobic' | ||
| 305 | +1.489191 Agit b'lemma:rpm' | ||
| 306 | +1.488153 Technique b'postag:NNP' | ||
| 307 | +1.481440 pH b'lemma:.5' | ||
| 308 | +1.481440 pH b'-1:lemma:ph5' | ||
| 309 | +1.479765 O b'-2:lemma:min' | ||
| 310 | +1.461483 Med b'+2:lemma:b1' | ||
| 311 | +1.458322 O b'lemma:-lrb-' | ||
| 312 | +1.457545 O b'lemma:ml' | ||
| 313 | +1.456515 O b'-1:lemma:type' | ||
| 314 | +1.455521 Phase b'lemma:phase' | ||
| 315 | +1.454471 Temp b'-1:lemma:\xcf\x8332' | ||
| 316 | +1.445071 Gtype b'-2:postag:DT' | ||
| 317 | +1.444366 O b'+1:lemma:od600' | ||
| 318 | +1.441153 Med b'+1:lemma:minimal' | ||
| 319 | +1.435416 O b'-1:lemma:wt' | ||
| 320 | +1.433093 O b'+1:lemma:coli' | ||
| 321 | +1.432963 Gtype b'+1:lemma:_' | ||
| 322 | +1.414930 Gtype b'+1:lemma:flagtag' | ||
| 323 | +1.409771 Med b'lemma:broth' | ||
| 324 | +1.409771 Med b'-1:lemma:L' | ||
| 325 | +1.404102 Gtype b'-1:postag:VBG' | ||
| 326 | +1.402997 O b'+1:lemma:condition' | ||
| 327 | +1.385125 O b'-2:lemma:ChIP-Seq' | ||
| 328 | +1.378975 O b'lemma:Custom' | ||
| 329 | +1.368428 Gtype b'-1:lemma:ptac' | ||
| 330 | +1.367249 Supp b'-2:lemma:condition' | ||
| 331 | +1.365896 Supp b'-1:lemma:_' | ||
| 332 | +1.360344 Gversion b'-2:postag:VB' | ||
| 333 | +1.358613 Gtype b'lemma:arca8myc' | ||
| 334 | +1.358613 Gtype b'-2:lemma:chip-arca' | ||
| 335 | +1.355013 O b'lemma:s' | ||
| 336 | +1.352241 Technique b'-1:lemma:rna-seq' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.240864 O b'-1:lemma:n2' | ||
| 341 | +-0.241870 Supp b'+2:postag::' | ||
| 342 | +-0.244948 Supp b'-1:postag:-LRB-' | ||
| 343 | +-0.245788 O b'+1:lemma:_' | ||
| 344 | +-0.250584 O b'+1:lemma:\xc2\xb0c' | ||
| 345 | +-0.251484 Supp b'+1:postag:VBN' | ||
| 346 | +-0.251630 Technique b'-2:postag:NN' | ||
| 347 | +-0.255068 O b'+1:lemma:culture' | ||
| 348 | +-0.255092 O b'lemma:ph' | ||
| 349 | +-0.257956 OD b'+2:postag:NN' | ||
| 350 | +-0.258052 O b'+1:lemma:gade' | ||
| 351 | +-0.259067 Gtype b'-2:postag:CD' | ||
| 352 | +-0.259245 O b'lemma:250' | ||
| 353 | +-0.260012 Phase b'+1:postag:NN' | ||
| 354 | +-0.261463 O b'-1:lemma:sodium' | ||
| 355 | +-0.261463 O b'+2:lemma:1/100' | ||
| 356 | +-0.261641 O b'-1:lemma:1m' | ||
| 357 | +-0.261641 O b'+2:lemma:7.6' | ||
| 358 | +-0.267912 Strain b'postag:NN' | ||
| 359 | +-0.268585 O b'-2:lemma:aerobically' | ||
| 360 | +-0.270821 O b'lemma:0.2' | ||
| 361 | +-0.271046 O b'-2:lemma:2' | ||
| 362 | +-0.273281 Temp b'-1:lemma:\xc2\xb0c' | ||
| 363 | +-0.273389 O b'+1:lemma:mg1655' | ||
| 364 | +-0.275465 Med b'-1:postag:CD' | ||
| 365 | +-0.279720 Supp b'+1:lemma:rifampicin' | ||
| 366 | +-0.282890 O b'+1:postag:IN' | ||
| 367 | +-0.290800 Supp b'+2:lemma:acetate' | ||
| 368 | +-0.293273 O b'-2:lemma:mg1655' | ||
| 369 | +-0.294116 Anti b'+2:postag:JJ' | ||
| 370 | +-0.299017 Supp b'lemma:1' | ||
| 371 | +-0.301190 O b'-1:postag:IN' | ||
| 372 | +-0.309209 Supp b'+1:postag:-RRB-' | ||
| 373 | +-0.311352 Supp b'+2:postag:CC' | ||
| 374 | +-0.313923 O b'+1:postag:VBG' | ||
| 375 | +-0.315176 Supp b'-1:lemma:dpd' | ||
| 376 | +-0.321987 O b'+1:lemma:gadw' | ||
| 377 | +-0.325650 Med b'-1:postag:NN' | ||
| 378 | +-0.327648 O b'lemma:methanol' | ||
| 379 | +-0.327648 O b'-2:lemma:dissolve' | ||
| 380 | +-0.328318 O b'-1:lemma:0.2' | ||
| 381 | +-0.334852 O b'lemma:fecl2' | ||
| 382 | +-0.339654 O b'lemma:anaerobic' | ||
| 383 | +-0.341230 O b'-1:lemma:chip-exo' | ||
| 384 | +-0.353401 O b'-1:lemma:cra' | ||
| 385 | +-0.354424 O b'-2:lemma:anaerobically' | ||
| 386 | +-0.355426 O b'-2:lemma:rpob' | ||
| 387 | +-0.355678 O b'-1:lemma:contain' | ||
| 388 | +-0.361362 O b'+1:lemma:g/l' | ||
| 389 | +-0.361781 O b'lemma:dissolve' | ||
| 390 | +-0.361781 O b'+2:lemma:methanol' | ||
| 391 | +-0.366638 O b'lemma:lb' | ||
| 392 | +-0.367583 Supp b'+1:lemma:fructose' | ||
| 393 | +-0.369374 Med b'+1:postag:NN' | ||
| 394 | +-0.369510 O b'lemma:m63' | ||
| 395 | +-0.370064 O b'-2:lemma:phase' | ||
| 396 | +-0.370439 O b'+1:lemma:minimal' | ||
| 397 | +-0.370982 O b'-2:lemma:pahse' | ||
| 398 | +-0.371136 Supp b'-2:lemma:grow' | ||
| 399 | +-0.375991 Vess b'postag:NN' | ||
| 400 | +-0.378096 O b'+1:lemma:rep2' | ||
| 401 | +-0.378255 O b'+2:lemma:-rrb-' | ||
| 402 | +-0.380278 O b'+2:lemma:at' | ||
| 403 | +-0.384210 O b'-1:lemma:minimal' | ||
| 404 | +-0.388239 O b'-2:lemma:glucose' | ||
| 405 | +-0.391106 Air b'-1:postag:JJ' | ||
| 406 | +-0.391908 O b'-1:lemma:until' | ||
| 407 | +-0.392584 Supp b'+2:lemma:-rrb-' | ||
| 408 | +-0.394595 O b'+1:lemma:Aerobic' | ||
| 409 | +-0.396109 O b'-1:lemma:final' | ||
| 410 | +-0.396858 Med b'+1:postag:IN' | ||
| 411 | +-0.398638 O b'-1:lemma:iptg' | ||
| 412 | +-0.405984 O b'-2:lemma:mm' | ||
| 413 | +-0.412751 O b'-1:lemma:37' | ||
| 414 | +-0.423858 O b'+1:lemma:dissolve' | ||
| 415 | +-0.428909 O b'-2:lemma:supplement' | ||
| 416 | +-0.431989 O b'+1:lemma:m' | ||
| 417 | +-0.436777 Supp b'+2:postag:-RRB-' | ||
| 418 | +-0.437255 Supp b'-1:postag:VBN' | ||
| 419 | +-0.440236 O b'+2:lemma:tag' | ||
| 420 | +-0.446461 Supp b'+1:postag:NNS' | ||
| 421 | +-0.448337 O b'lemma:nitrogen' | ||
| 422 | +-0.452881 Supp b'postag:CC' | ||
| 423 | +-0.454287 Supp b'+2:lemma:glucose' | ||
| 424 | +-0.459760 O b'lemma:minimal' | ||
| 425 | +-0.470804 O b'-2:lemma:nh4cl' | ||
| 426 | +-0.491402 O b'postag:RB' | ||
| 427 | +-0.494015 O b'lemma:37' | ||
| 428 | +-0.499646 O b'-1:lemma:g/l' | ||
| 429 | +-0.502121 O b'+2:lemma:a' | ||
| 430 | +-0.507239 Supp b'+1:lemma:acetate' | ||
| 431 | +-0.509993 O b'-1:lemma:dissolve' | ||
| 432 | +-0.509993 O b'+1:lemma:methanol' | ||
| 433 | +-0.518444 Supp b'-1:postag:NNP' | ||
| 434 | +-0.522170 O b'-1:lemma:grow' | ||
| 435 | +-0.523412 O b'-2:lemma:a' | ||
| 436 | +-0.531453 O b'+1:lemma:1m' | ||
| 437 | +-0.531453 O b'-2:lemma:vol' | ||
| 438 | +-0.534602 O b'+2:lemma:250' | ||
| 439 | +-0.538057 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 440 | +-0.549372 O b'+2:lemma:then' | ||
| 441 | +-0.549638 O b'+2:lemma:genome' | ||
| 442 | +-0.550134 Supp b'-2:lemma:treat' | ||
| 443 | +-0.556977 O b'-1:lemma:fresh' | ||
| 444 | +-0.558288 O b'-1:lemma:dfnr' | ||
| 445 | +-0.565708 O b'+1:lemma:supplement' | ||
| 446 | +-0.569022 O b'lemma:fructose' | ||
| 447 | +-0.575610 O b'lemma:anaerobically' | ||
| 448 | +-0.577376 O b'-2:lemma:genome' | ||
| 449 | +-0.595858 O b'-2:lemma:fresh' | ||
| 450 | +-0.603206 O b'-2:postag:DT' | ||
| 451 | +-0.608051 O b'+1:lemma:mm' | ||
| 452 | +-0.613648 O b'lemma:glucose' | ||
| 453 | +-0.624344 O b'lemma:k-12' | ||
| 454 | +-0.635426 Supp b'+1:lemma:,' | ||
| 455 | +-0.635426 Supp b'+1:postag:,' | ||
| 456 | +-0.639334 O b'-1:lemma:mm' | ||
| 457 | +-0.646392 O b'-1:lemma:\xe2\x88\x86' | ||
| 458 | +-0.646596 Med b'-2:lemma:grow' | ||
| 459 | +-0.652076 O b'-2:lemma:until' | ||
| 460 | +-0.661116 O b'lemma:2h' | ||
| 461 | +-0.661116 O b'-1:lemma:additional' | ||
| 462 | +-0.663482 O b'-2:postag:RB' | ||
| 463 | +-0.673788 O b'-2:lemma::' | ||
| 464 | +-0.674569 O b'+2:lemma:reference' | ||
| 465 | +-0.683036 O b'+2:lemma:add' | ||
| 466 | +-0.685189 pH b'postag:NN' | ||
| 467 | +-0.685297 O b'postag:VBP' | ||
| 468 | +-0.688346 Med b'+2:postag:VBN' | ||
| 469 | +-0.688555 Supp b'+1:lemma:-lrb-' | ||
| 470 | +-0.690175 Supp b'-2:postag:JJ' | ||
| 471 | +-0.690245 Phase b'postag:JJ' | ||
| 472 | +-0.697689 O b'+2:lemma:10' | ||
| 473 | +-0.703863 Supp b'+1:postag:-LRB-' | ||
| 474 | +-0.708967 Anti b'+1:lemma:anti-fur' | ||
| 475 | +-0.728829 O b'+1:lemma:until' | ||
| 476 | +-0.747693 O b'-1:lemma:ml' | ||
| 477 | +-0.751276 O b'-2:lemma:dpd' | ||
| 478 | +-0.756088 O b'lemma:aerobically' | ||
| 479 | +-0.760131 O b'-1:lemma:30' | ||
| 480 | +-0.766561 O b'lemma:\xe2\x88\x86' | ||
| 481 | +-0.771321 O b'-2:postag:SYM' | ||
| 482 | +-0.778341 O b'-1:lemma:2' | ||
| 483 | +-0.802560 O b'lemma:of' | ||
| 484 | +-0.802884 Med b'-2:postag:VBN' | ||
| 485 | +-0.806377 O b'-1:postag::' | ||
| 486 | +-0.826105 O b'+2:lemma:mid-log' | ||
| 487 | +-0.849054 O b'-2:lemma:media' | ||
| 488 | +-0.867470 O b'-1:lemma:vol' | ||
| 489 | +-0.867470 O b'-2:lemma:1/100' | ||
| 490 | +-0.867470 O b'+2:lemma:1m' | ||
| 491 | +-0.867875 Phase b'-1:postag:JJ' | ||
| 492 | +-0.884642 O b'lemma:nh4cl' | ||
| 493 | +-0.898025 O b'+2:postag:-RRB-' | ||
| 494 | +-0.915346 Temp b'postag:NN' | ||
| 495 | +-0.917405 O b'+2:lemma:+' | ||
| 496 | +-0.919858 O b'-1:lemma:1' | ||
| 497 | +-0.926225 O b'-1:lemma:rpob' | ||
| 498 | +-0.927298 O b'-2:lemma:IP' | ||
| 499 | +-0.934298 O b'lemma:mid-log' | ||
| 500 | +-0.947126 O b'-1:lemma:co2' | ||
| 501 | +-0.947829 Air b'+1:postag:JJ' | ||
| 502 | +-0.976905 O b'+2:lemma:fnr' | ||
| 503 | +-0.983443 Anti b'+2:lemma:polyclonal' | ||
| 504 | +-0.983730 O b'lemma:nitrate' | ||
| 505 | +-0.994076 Supp b'+2:lemma:fructose' | ||
| 506 | +-0.999100 Air b'postag:NN' | ||
| 507 | +-0.999246 O b'-1:lemma:ph' | ||
| 508 | +-1.004751 OD b'+1:postag:NN' | ||
| 509 | +-1.006120 O b'+1:lemma:+' | ||
| 510 | +-1.012830 O b'-2:lemma:0.3' | ||
| 511 | +-1.019854 O b'+2:lemma:b' | ||
| 512 | +-1.020397 O b'+1:lemma:2.0' | ||
| 513 | +-1.043510 O b'-1:lemma:sample' | ||
| 514 | +-1.049774 OD b'+2:lemma:aerobically' | ||
| 515 | +-1.060960 O b'lemma:30' | ||
| 516 | +-1.076454 O b'lemma:rifampicin' | ||
| 517 | +-1.098762 Supp b'+2:postag:CD' | ||
| 518 | +-1.112282 O b'lemma:aerobic' | ||
| 519 | +-1.121896 Gtype b'+2:lemma:cra' | ||
| 520 | +-1.139537 Supp b'+2:lemma:2' | ||
| 521 | +-1.152551 Supp b'+2:lemma:1' | ||
| 522 | +-1.156894 O b'lemma:media' | ||
| 523 | +-1.166267 O b'+1:lemma:at' | ||
| 524 | +-1.166551 O b'-1:lemma:nsrr' | ||
| 525 | +-1.176235 O b'+1:lemma:in' | ||
| 526 | +-1.183711 O b'+2:lemma:rifampicin' | ||
| 527 | +-1.212779 O b'lemma:wt' | ||
| 528 | +-1.245458 O b'-2:lemma:rifampicin' | ||
| 529 | +-1.334770 O b'lemma:\xce\xb4fur' | ||
| 530 | +-1.335529 O b'-1:lemma:IP' | ||
| 531 | +-1.335617 Anti b'postag:NNP' | ||
| 532 | +-1.392108 O b'lemma:0.3' | ||
| 533 | +-1.428060 Gtype b'postag:VBG' | ||
| 534 | +-1.462629 O b'-1:postag:VBG' | ||
| 535 | +-1.559454 Supp b'postag:JJ' | ||
| 536 | +-1.728116 O b'+1:lemma:1' | ||
| 537 | +-2.237261 O b'+1:lemma:2' | ||
| 538 | +-2.735096 O b'-1:lemma::' | ||
| 539 | +-3.093805 O b'-1:lemma:_' | ||
| 540 | + |
CRF/reports/report_Run_5_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.14456252410554848, 'c2': 0.011570925278244349} | ||
| 5 | +best CV score:0.8716328545433987 | ||
| 6 | +model size: 0.08M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7636412886634287 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.870 0.930 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 0.923 0.828 0.873 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.545 0.348 0.425 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.867 0.847 0.857 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.588 0.799 0.677 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.772 0.774 0.764 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 6.024803 | ||
| 32 | +Agit -> Agit 5.753028 | ||
| 33 | +Supp -> Supp 5.295546 | ||
| 34 | +Med -> Med 5.289039 | ||
| 35 | +OD -> OD 5.264385 | ||
| 36 | +Anti -> Anti 4.686479 | ||
| 37 | +Phase -> Phase 4.417910 | ||
| 38 | +Gversion -> Gversion 4.395019 | ||
| 39 | +Gtype -> Gtype 4.186766 | ||
| 40 | +Air -> Air 4.136213 | ||
| 41 | +O -> O 3.983716 | ||
| 42 | +Technique -> Technique 3.660895 | ||
| 43 | +pH -> pH 2.993749 | ||
| 44 | +Substrain -> Gtype 1.904754 | ||
| 45 | +Gtype -> Supp 1.311934 | ||
| 46 | +O -> Supp 1.064130 | ||
| 47 | +Air -> O 1.010529 | ||
| 48 | +O -> Technique 0.929538 | ||
| 49 | +O -> Gtype 0.674914 | ||
| 50 | +Gtype -> Air 0.657462 | ||
| 51 | +Technique -> Air 0.573565 | ||
| 52 | +Supp -> O 0.528829 | ||
| 53 | +Temp -> O 0.495755 | ||
| 54 | +Med -> O 0.454783 | ||
| 55 | +O -> Temp 0.096626 | ||
| 56 | +Phase -> O 0.074667 | ||
| 57 | +O -> Phase 0.052955 | ||
| 58 | +O -> Med 0.050244 | ||
| 59 | +Gtype -> pH 0.043509 | ||
| 60 | +O -> Anti 0.028320 | ||
| 61 | +Gtype -> Technique -0.027765 | ||
| 62 | +Agit -> O -0.075594 | ||
| 63 | +Technique -> O -0.250844 | ||
| 64 | +Gtype -> Med -0.292682 | ||
| 65 | +Supp -> Med -0.310233 | ||
| 66 | +OD -> Air -0.365882 | ||
| 67 | +O -> Air -0.729567 | ||
| 68 | +Phase -> OD -0.765060 | ||
| 69 | +Gtype -> O -0.784406 | ||
| 70 | +Technique -> Gtype -1.361493 | ||
| 71 | +Substrain -> O -1.377371 | ||
| 72 | +Med -> Supp -1.830126 | ||
| 73 | + | ||
| 74 | + | ||
| 75 | +Top unlikely transitions: | ||
| 76 | +Temp -> Temp 6.024803 | ||
| 77 | +Agit -> Agit 5.753028 | ||
| 78 | +Supp -> Supp 5.295546 | ||
| 79 | +Med -> Med 5.289039 | ||
| 80 | +OD -> OD 5.264385 | ||
| 81 | +Anti -> Anti 4.686479 | ||
| 82 | +Phase -> Phase 4.417910 | ||
| 83 | +Gversion -> Gversion 4.395019 | ||
| 84 | +Gtype -> Gtype 4.186766 | ||
| 85 | +Air -> Air 4.136213 | ||
| 86 | +O -> O 3.983716 | ||
| 87 | +Technique -> Technique 3.660895 | ||
| 88 | +pH -> pH 2.993749 | ||
| 89 | +Substrain -> Gtype 1.904754 | ||
| 90 | +Gtype -> Supp 1.311934 | ||
| 91 | +O -> Supp 1.064130 | ||
| 92 | +Air -> O 1.010529 | ||
| 93 | +O -> Technique 0.929538 | ||
| 94 | +O -> Gtype 0.674914 | ||
| 95 | +Gtype -> Air 0.657462 | ||
| 96 | +Technique -> Air 0.573565 | ||
| 97 | +Supp -> O 0.528829 | ||
| 98 | +Temp -> O 0.495755 | ||
| 99 | +Med -> O 0.454783 | ||
| 100 | +O -> Temp 0.096626 | ||
| 101 | +Phase -> O 0.074667 | ||
| 102 | +O -> Phase 0.052955 | ||
| 103 | +O -> Med 0.050244 | ||
| 104 | +Gtype -> pH 0.043509 | ||
| 105 | +O -> Anti 0.028320 | ||
| 106 | +Gtype -> Technique -0.027765 | ||
| 107 | +Agit -> O -0.075594 | ||
| 108 | +Technique -> O -0.250844 | ||
| 109 | +Gtype -> Med -0.292682 | ||
| 110 | +Supp -> Med -0.310233 | ||
| 111 | +OD -> Air -0.365882 | ||
| 112 | +O -> Air -0.729567 | ||
| 113 | +Phase -> OD -0.765060 | ||
| 114 | +Gtype -> O -0.784406 | ||
| 115 | +Technique -> Gtype -1.361493 | ||
| 116 | +Substrain -> O -1.377371 | ||
| 117 | +Med -> Supp -1.830126 | ||
| 118 | + | ||
| 119 | + | ||
| 120 | +Top positive: | ||
| 121 | +6.812438 O b'lemma:2' | ||
| 122 | +6.703250 Phase b'lemma:mid-log' | ||
| 123 | +6.559342 O b'lemma:1' | ||
| 124 | +6.133494 Anti b'-2:lemma:antibody' | ||
| 125 | +5.903347 Air b'lemma:anaerobic' | ||
| 126 | +5.834979 O b'-2:lemma:_' | ||
| 127 | +5.776253 Air b'lemma:Aerobic' | ||
| 128 | +5.551637 Gtype b'lemma:wt' | ||
| 129 | +5.548591 Gtype b'lemma:type' | ||
| 130 | +5.516753 O b'lemma:3' | ||
| 131 | +5.468775 O b'-2:lemma:flagtag' | ||
| 132 | +5.270765 Supp b'lemma:pq' | ||
| 133 | +5.224920 Technique b'lemma:chipseq' | ||
| 134 | +5.217760 O b'lemma:_' | ||
| 135 | +5.150603 Technique b'lemma:ChIP-exo' | ||
| 136 | +4.842010 O b'-1:lemma:ChIP-exo' | ||
| 137 | +4.788720 Air b'lemma:aerobic' | ||
| 138 | +4.755345 Gtype b'lemma:\xce\xb4cra' | ||
| 139 | +4.651993 Med b'lemma:MOPS' | ||
| 140 | +4.537114 Gtype b'lemma:\xe2\x88\x86' | ||
| 141 | +4.464327 Gtype b'lemma:wild-type' | ||
| 142 | +4.427065 O b'postag:IN' | ||
| 143 | +4.254029 Supp b'lemma:no3' | ||
| 144 | +4.245214 Gtype b'lemma:flag-tag' | ||
| 145 | +4.245214 Gtype b'-1:lemma:c-terminal' | ||
| 146 | +4.223016 O b'lemma:b' | ||
| 147 | +4.196865 Technique b'lemma:rna-seq' | ||
| 148 | +4.184006 Gtype b'+1:lemma:type' | ||
| 149 | +4.176776 O b'lemma:-' | ||
| 150 | +4.152973 Phase b'-2:lemma:phase' | ||
| 151 | +4.056463 Gtype b'-2:lemma:genotype/variation' | ||
| 152 | +3.986855 Supp b'lemma:Iron' | ||
| 153 | +3.986855 Supp b'-2:lemma:Anaerobic' | ||
| 154 | +3.973602 O b'lemma:rpob' | ||
| 155 | +3.966116 Supp b'lemma:acetate' | ||
| 156 | +3.938991 O b'lemma:.' | ||
| 157 | +3.938991 O b'postag:.' | ||
| 158 | +3.894365 Supp b'lemma:nacl' | ||
| 159 | +3.881738 Gtype b'lemma:\xce\xb4fur' | ||
| 160 | +3.877245 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 161 | +3.815337 Technique b'lemma:chip-seq' | ||
| 162 | +3.743495 O b'lemma:with' | ||
| 163 | +3.732573 Supp b'lemma:nh4cl' | ||
| 164 | +3.716505 Air b'postag:RB' | ||
| 165 | +3.640623 O b'+2:lemma:\xc2\xb0c' | ||
| 166 | +3.608559 Med b'lemma:lb' | ||
| 167 | +3.571656 O b'postag:VBN' | ||
| 168 | +3.549390 O b'postag:CC' | ||
| 169 | +3.503089 O b'-2:lemma:medium' | ||
| 170 | +3.502227 Gtype b'lemma:dfnr' | ||
| 171 | +3.494672 O b'lemma:a' | ||
| 172 | +3.490805 Supp b'-1:lemma:Cra' | ||
| 173 | +3.447774 Supp b'lemma:nitrate' | ||
| 174 | +3.423108 O b'lemma:Cra' | ||
| 175 | +3.418016 Gtype b'lemma:\xce\xb4soxr' | ||
| 176 | +3.395324 Gtype b'-2:lemma:genotype' | ||
| 177 | +3.386697 Supp b'lemma:glucose' | ||
| 178 | +3.344372 Technique b'+2:lemma:ph5' | ||
| 179 | +3.251866 Supp b'-1:lemma:with' | ||
| 180 | +3.249713 O b'postag::' | ||
| 181 | +3.200140 Gtype b'-2:lemma:affyexp' | ||
| 182 | +3.182935 Supp b'lemma:arginine' | ||
| 183 | +3.180726 Gversion b'lemma:chip-seq' | ||
| 184 | +3.161435 Technique b'lemma:rnaseq' | ||
| 185 | +3.148795 Supp b'+2:lemma:iptg' | ||
| 186 | +3.067497 Substrain b'lemma:mg1655' | ||
| 187 | +3.056568 O b'lemma:CEL' | ||
| 188 | +3.013304 Med b'lemma:m63' | ||
| 189 | +3.005306 Gtype b'-2:lemma:delta' | ||
| 190 | +3.005008 O b'lemma:harbor' | ||
| 191 | +3.001202 Air b'-1:lemma:ChIP-Seq' | ||
| 192 | +2.966077 O b'-1:lemma:\xc2\xb0c' | ||
| 193 | +2.927961 Gtype b'lemma:nsrr' | ||
| 194 | +2.909022 Gtype b'lemma:pk4854' | ||
| 195 | +2.878177 Air b'-2:lemma:IP' | ||
| 196 | +2.876549 Technique b'lemma:ChIP-Seq' | ||
| 197 | +2.870544 O b'+1:lemma:arca-8myc' | ||
| 198 | +2.865302 O b'-2:lemma:myc' | ||
| 199 | +2.847767 Technique b'-2:lemma:Fur' | ||
| 200 | +2.847429 Gtype b'+1:lemma:with' | ||
| 201 | +2.829243 O b'-1:lemma:0.3' | ||
| 202 | +2.778649 O b'lemma:rep2' | ||
| 203 | +2.776931 Technique b'-1:lemma:IP' | ||
| 204 | +2.773491 Supp b'+1:lemma:\xc2\xb5m' | ||
| 205 | +2.763337 O b'postag:DT' | ||
| 206 | +2.746233 Supp b'+1:lemma:1' | ||
| 207 | +2.744343 Anti b'+2:lemma:antibody' | ||
| 208 | +2.730395 O b'lemma:chip' | ||
| 209 | +2.728846 O b'-1:lemma:tag' | ||
| 210 | +2.664541 O b'-1:lemma:media' | ||
| 211 | +2.622991 Supp b'lemma:rifampicin' | ||
| 212 | +2.586777 Temp b'-1:lemma:\xcf\x8332' | ||
| 213 | +2.573215 Gtype b'+1:lemma:ph5' | ||
| 214 | +2.573215 Gtype b'+2:lemma:.5' | ||
| 215 | +2.566604 O b'-1:lemma:lb' | ||
| 216 | +2.552670 Temp b'-2:lemma:\xcf\x8332' | ||
| 217 | +2.541452 O b'-1:lemma:type' | ||
| 218 | +2.526524 pH b'+1:postag:CD' | ||
| 219 | +2.516979 O b'-1:lemma:glucose' | ||
| 220 | +2.501080 Technique b'-1:lemma:chip-exo' | ||
| 221 | +2.497698 Gtype b'lemma:\xce\xb4ompr' | ||
| 222 | +2.495468 Substrain b'-2:lemma:substr' | ||
| 223 | +2.481730 O b'postag:VBG' | ||
| 224 | +2.475769 Med b'+2:lemma:b2' | ||
| 225 | +2.463569 Gtype b'lemma:\xce\xb4oxyr' | ||
| 226 | +2.457060 O b'+1:postag:RB' | ||
| 227 | +2.438239 Temp b'lemma:43' | ||
| 228 | +2.435108 Supp b'lemma:Leu' | ||
| 229 | +2.435108 Supp b'-2:lemma:Lrp' | ||
| 230 | +2.434323 O b'-2:lemma:min' | ||
| 231 | +2.423093 Supp b'-2:lemma:agent' | ||
| 232 | +2.399905 O b'+1:postag:NNP' | ||
| 233 | +2.392843 Anti b'+1:lemma:antibody' | ||
| 234 | +2.387723 Supp b'-1:lemma:+' | ||
| 235 | +2.375278 O b'lemma:ompr' | ||
| 236 | +2.375177 O b'lemma:ml' | ||
| 237 | +2.351025 O b'+2:lemma:cra' | ||
| 238 | +2.328145 Supp b'-2:lemma:media' | ||
| 239 | +2.315613 pH b'lemma:ph5' | ||
| 240 | +2.315613 pH b'+1:lemma:.5' | ||
| 241 | +2.295509 Phase b'lemma:exponential' | ||
| 242 | +2.295509 Phase b'lemma:stationary' | ||
| 243 | +2.282923 Strain b'+1:lemma:substr' | ||
| 244 | +2.282923 Strain b'-2:lemma:str' | ||
| 245 | +2.282875 Gversion b'lemma:.2' | ||
| 246 | +2.282875 Gversion b'-1:lemma:u00096' | ||
| 247 | +2.271205 Supp b'+1:lemma:2' | ||
| 248 | +2.268299 Air b'lemma:anaeroibc' | ||
| 249 | +2.262222 Air b'-1:lemma:-' | ||
| 250 | +2.253598 O b'lemma:s' | ||
| 251 | +2.235400 Temp b'-1:lemma:43' | ||
| 252 | +2.227662 Phase b'lemma:phase' | ||
| 253 | +2.215669 Phase b'-1:lemma:mid-log' | ||
| 254 | +2.203744 Med b'+2:postag:CC' | ||
| 255 | +2.189036 Substrain b'+1:lemma:phtpg' | ||
| 256 | +2.178331 Gtype b'-1:lemma:rpob' | ||
| 257 | +2.173660 Strain b'lemma:k-12' | ||
| 258 | +2.160417 Gtype b'-1:postag:VBG' | ||
| 259 | +2.141054 Agit b'+2:lemma:at' | ||
| 260 | +2.140046 Med b'lemma:broth' | ||
| 261 | +2.140046 Med b'-1:lemma:L' | ||
| 262 | +2.132754 Temp b'+1:lemma:\xc2\xb0c' | ||
| 263 | +2.122883 O b'lemma:soxs' | ||
| 264 | +2.122883 O b'lemma:soxr' | ||
| 265 | +2.115213 O b'postag:VBD' | ||
| 266 | +2.111512 O b'lemma:\xcf\x8332' | ||
| 267 | +2.083781 Agit b'lemma:rpm' | ||
| 268 | +2.051564 O b'lemma:culture' | ||
| 269 | +2.049120 O b'+1:lemma:condition' | ||
| 270 | +2.041245 Gversion b'lemma:nc' | ||
| 271 | +2.038470 O b'+1:lemma:250' | ||
| 272 | +2.033120 O b'lemma:Custom' | ||
| 273 | +2.025823 O b'postag:NNS' | ||
| 274 | +2.016924 O b'+2:lemma:70' | ||
| 275 | +2.010539 O b'+2:postag:JJ' | ||
| 276 | +2.006555 O b'-1:lemma:aerobically' | ||
| 277 | +1.996814 O b'-2:lemma:~' | ||
| 278 | +1.984709 O b'+2:lemma:polyclonal' | ||
| 279 | +1.976905 Supp b'lemma:Adenine' | ||
| 280 | +1.976120 Technique b'-1:lemma:input' | ||
| 281 | +1.964721 Air b'lemma:aerobically' | ||
| 282 | +1.957500 Gversion b'lemma:u00096' | ||
| 283 | +1.957500 Gversion b'+1:lemma:.2' | ||
| 284 | +1.944301 O b'+1:lemma:chip-seq' | ||
| 285 | +1.944163 Temp b'-1:lemma:sample' | ||
| 286 | +1.935179 O b'lemma:trpr' | ||
| 287 | +1.934476 O b'+1:lemma:coli' | ||
| 288 | +1.932800 Supp b'lemma:fructose' | ||
| 289 | +1.929974 Med b'lemma:media' | ||
| 290 | +1.923950 O b'-1:lemma:anaerobic' | ||
| 291 | +1.922151 Gversion b'+2:lemma:000913' | ||
| 292 | +1.917131 Temp b'lemma:\xc2\xb0c' | ||
| 293 | +1.887292 OD b'lemma:od450' | ||
| 294 | +1.883152 Agit b'+1:lemma:rpm' | ||
| 295 | +1.879063 Gtype b'lemma:ptac' | ||
| 296 | +1.875710 O b'+1:lemma:pq' | ||
| 297 | +1.873042 O b'+2:lemma:fructose' | ||
| 298 | +1.856178 Supp b'+1:lemma:_' | ||
| 299 | +1.855822 Gtype b'-1:lemma:ptac' | ||
| 300 | +1.853574 Supp b'+2:lemma:rifampicin' | ||
| 301 | +1.850128 Med b'+2:lemma:b1' | ||
| 302 | +1.848750 O b'-1:lemma:into' | ||
| 303 | +1.826684 Gversion b'-2:lemma:nc' | ||
| 304 | +1.820054 Supp b'+2:lemma:feso4' | ||
| 305 | +1.808700 Supp b'-2:lemma:condition' | ||
| 306 | +1.799712 O b'-1:lemma:Aerobic' | ||
| 307 | +1.787048 Med b'+1:lemma:0.4' | ||
| 308 | +1.768038 O b'lemma:argr' | ||
| 309 | +1.752493 Supp b'-2:lemma:induce' | ||
| 310 | +1.749745 O b'+1:lemma:acetate' | ||
| 311 | +1.744647 O b'+1:lemma:od600' | ||
| 312 | +1.730393 O b'lemma:genotype/variation' | ||
| 313 | +1.700932 Gtype b'-2:postag:DT' | ||
| 314 | +1.688694 Gtype b'+1:lemma:flagtag' | ||
| 315 | +1.685861 Gversion b'-2:lemma:build' | ||
| 316 | +1.683071 Supp b'-2:lemma:purr' | ||
| 317 | +1.676299 Gversion b'lemma:asm584v2' | ||
| 318 | +1.648539 Technique b'-1:lemma:rna-seq' | ||
| 319 | +1.647830 Air b'+2:lemma:L' | ||
| 320 | +1.643928 Med b'-1:lemma:in' | ||
| 321 | + | ||
| 322 | + | ||
| 323 | +Top negative: | ||
| 324 | +-0.078150 O b'-2:lemma:0.1' | ||
| 325 | +-0.081643 O b'lemma:methanol' | ||
| 326 | +-0.081643 O b'-2:lemma:dissolve' | ||
| 327 | +-0.082341 Supp b'-2:postag:-LRB-' | ||
| 328 | +-0.086140 Supp b'-1:lemma:dpd' | ||
| 329 | +-0.088476 Air b'-1:lemma:or' | ||
| 330 | +-0.088979 Supp b'+2:postag:NN' | ||
| 331 | +-0.089036 Supp b'+2:postag:NNP' | ||
| 332 | +-0.089839 O b'+1:lemma:ph' | ||
| 333 | +-0.091080 O b'-1:lemma:0.2' | ||
| 334 | +-0.092461 Technique b'-1:postag::' | ||
| 335 | +-0.092726 Agit b'postag:NN' | ||
| 336 | +-0.097852 Med b'-1:postag:IN' | ||
| 337 | +-0.100389 Supp b'+2:lemma:.' | ||
| 338 | +-0.100389 Supp b'+2:postag:.' | ||
| 339 | +-0.100772 Strain b'postag:NN' | ||
| 340 | +-0.101155 O b'lemma:\xe2\x88\x86' | ||
| 341 | +-0.101175 O b'+2:lemma:supplement' | ||
| 342 | +-0.103582 O b'+1:lemma:of' | ||
| 343 | +-0.104478 O b'-1:lemma:37' | ||
| 344 | +-0.104623 Technique b'-2:postag:NN' | ||
| 345 | +-0.106509 O b'-1:lemma:iptg' | ||
| 346 | +-0.106780 O b'+2:lemma:ph' | ||
| 347 | +-0.107862 Air b'-2:postag:CC' | ||
| 348 | +-0.109728 O b'+1:lemma:.' | ||
| 349 | +-0.109728 O b'+1:postag:.' | ||
| 350 | +-0.113993 Supp b'-1:lemma:10' | ||
| 351 | +-0.114214 O b'lemma:7.6' | ||
| 352 | +-0.114214 O b'+1:lemma:;' | ||
| 353 | +-0.115982 Agit b'-1:postag:NN' | ||
| 354 | +-0.119361 O b'-1:lemma:until' | ||
| 355 | +-0.124272 Gtype b'-2:postag:CD' | ||
| 356 | +-0.129779 O b'lemma:;' | ||
| 357 | +-0.129779 O b'-1:lemma:7.6' | ||
| 358 | +-0.136518 O b'+1:postag:-LRB-' | ||
| 359 | +-0.139593 O b'-1:lemma:of' | ||
| 360 | +-0.140386 O b'+1:lemma:a' | ||
| 361 | +-0.142883 O b'+1:lemma:95' | ||
| 362 | +-0.143055 O b'-2:lemma:pahse' | ||
| 363 | +-0.149480 O b'-2:lemma:the' | ||
| 364 | +-0.150711 O b'-1:lemma:contain' | ||
| 365 | +-0.151497 Temp b'-2:postag:NN' | ||
| 366 | +-0.151937 O b'-2:postag::' | ||
| 367 | +-0.153171 O b'+2:lemma:-rrb-' | ||
| 368 | +-0.153549 Supp b'postag:CC' | ||
| 369 | +-0.158194 O b'+1:lemma:fecl2' | ||
| 370 | +-0.160887 Supp b'+1:lemma:-rrb-' | ||
| 371 | +-0.161707 Supp b'+2:lemma:dpd' | ||
| 372 | +-0.166764 O b'-2:lemma:phase' | ||
| 373 | +-0.171348 Supp b'+1:lemma:acetate' | ||
| 374 | +-0.171861 O b'-1:lemma:sodium' | ||
| 375 | +-0.171861 O b'+2:lemma:1/100' | ||
| 376 | +-0.178092 Supp b'-1:lemma:-lrb-' | ||
| 377 | +-0.181338 O b'lemma:dissolve' | ||
| 378 | +-0.181338 O b'+2:lemma:methanol' | ||
| 379 | +-0.187811 Supp b'+2:lemma:glucose' | ||
| 380 | +-0.194739 O b'-1:lemma:1m' | ||
| 381 | +-0.194739 O b'+2:lemma:7.6' | ||
| 382 | +-0.197753 Supp b'-1:postag:-LRB-' | ||
| 383 | +-0.199612 Med b'-1:postag:NN' | ||
| 384 | +-0.202024 O b'-1:lemma:n2' | ||
| 385 | +-0.203121 Med b'+1:postag:IN' | ||
| 386 | +-0.207404 O b'lemma:ph' | ||
| 387 | +-0.210173 O b'-2:lemma:aerobically' | ||
| 388 | +-0.225375 O b'-1:lemma:cra' | ||
| 389 | +-0.226782 O b'+2:lemma:reference' | ||
| 390 | +-0.229562 O b'-2:lemma:genome' | ||
| 391 | +-0.233367 O b'-2:lemma:dpd' | ||
| 392 | +-0.239153 Supp b'+1:postag:VBN' | ||
| 393 | +-0.249635 O b'-1:postag:IN' | ||
| 394 | +-0.252658 Med b'postag:CD' | ||
| 395 | +-0.254030 Med b'+1:postag:NN' | ||
| 396 | +-0.256499 O b'lemma:fecl2' | ||
| 397 | +-0.259528 Supp b'-2:postag:NNS' | ||
| 398 | +-0.262022 O b'-1:lemma:ml' | ||
| 399 | +-0.263583 Air b'+2:postag:IN' | ||
| 400 | +-0.268766 O b'-2:lemma:mm' | ||
| 401 | +-0.270868 O b'+1:postag:IN' | ||
| 402 | +-0.271998 O b'+2:lemma:250' | ||
| 403 | +-0.273382 O b'+1:lemma:%' | ||
| 404 | +-0.280464 Supp b'+1:postag:-RRB-' | ||
| 405 | +-0.288772 O b'+2:lemma:.' | ||
| 406 | +-0.288772 O b'+2:postag:.' | ||
| 407 | +-0.293729 Gtype b'-1:postag:NN' | ||
| 408 | +-0.294905 Med b'-1:postag:CD' | ||
| 409 | +-0.308324 Phase b'-2:postag:NN' | ||
| 410 | +-0.328837 O b'-2:lemma:anaerobically' | ||
| 411 | +-0.334523 O b'lemma:37' | ||
| 412 | +-0.338413 O b'-1:lemma:fresh' | ||
| 413 | +-0.346729 O b'-2:lemma:rpob' | ||
| 414 | +-0.351198 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 415 | +-0.355232 Supp b'+2:lemma:-rrb-' | ||
| 416 | +-0.356631 O b'lemma:mid-log' | ||
| 417 | +-0.357653 O b'-1:lemma:minimal' | ||
| 418 | +-0.359546 O b'+1:lemma:+' | ||
| 419 | +-0.363243 O b'+1:lemma:minimal' | ||
| 420 | +-0.365382 O b'-2:lemma:until' | ||
| 421 | +-0.385235 O b'+2:lemma:at' | ||
| 422 | +-0.389156 Anti b'+2:postag:JJ' | ||
| 423 | +-0.391480 O b'+1:lemma:g/l' | ||
| 424 | +-0.399222 Supp b'+2:postag:-RRB-' | ||
| 425 | +-0.412306 O b'lemma:minimal' | ||
| 426 | +-0.429953 O b'+1:lemma:1m' | ||
| 427 | +-0.429953 O b'-2:lemma:vol' | ||
| 428 | +-0.431351 O b'lemma:nitrate' | ||
| 429 | +-0.432398 O b'-2:lemma:media' | ||
| 430 | +-0.449447 Supp b'+1:lemma:rifampicin' | ||
| 431 | +-0.451303 O b'-2:lemma:fresh' | ||
| 432 | +-0.457431 O b'+1:lemma:supplement' | ||
| 433 | +-0.461836 Supp b'-1:postag:NNP' | ||
| 434 | +-0.463561 O b'+1:postag:VBG' | ||
| 435 | +-0.472320 Anti b'+1:lemma:anti-fur' | ||
| 436 | +-0.484075 O b'lemma:aerobically' | ||
| 437 | +-0.484194 O b'-1:postag::' | ||
| 438 | +-0.498931 Supp b'+1:postag:NNS' | ||
| 439 | +-0.503746 Supp b'+1:lemma:,' | ||
| 440 | +-0.503746 Supp b'+1:postag:,' | ||
| 441 | +-0.516754 Supp b'-2:lemma:treat' | ||
| 442 | +-0.528514 O b'+2:lemma:add' | ||
| 443 | +-0.529405 O b'-2:lemma:glucose' | ||
| 444 | +-0.533457 O b'+1:lemma:mm' | ||
| 445 | +-0.546157 Supp b'lemma:10' | ||
| 446 | +-0.565127 Supp b'+1:lemma:-lrb-' | ||
| 447 | +-0.566088 Med b'-2:postag:VBN' | ||
| 448 | +-0.566661 O b'-1:lemma:dissolve' | ||
| 449 | +-0.566661 O b'+1:lemma:methanol' | ||
| 450 | +-0.570423 O b'lemma:wt' | ||
| 451 | +-0.580351 O b'-2:lemma:supplement' | ||
| 452 | +-0.586279 Phase b'+1:postag:NN' | ||
| 453 | +-0.593248 Supp b'+1:postag:-LRB-' | ||
| 454 | +-0.597210 O b'-1:lemma:grow' | ||
| 455 | +-0.598482 O b'-1:lemma:co2' | ||
| 456 | +-0.601257 O b'lemma:anaerobically' | ||
| 457 | +-0.603375 O b'-2:lemma::' | ||
| 458 | +-0.604605 O b'+2:lemma:10' | ||
| 459 | +-0.608424 Med b'+2:postag:VBN' | ||
| 460 | +-0.640686 O b'-1:lemma:rpob' | ||
| 461 | +-0.648211 O b'-1:lemma:mm' | ||
| 462 | +-0.677339 O b'+2:lemma:a' | ||
| 463 | +-0.691258 pH b'postag:NN' | ||
| 464 | +-0.714470 O b'-2:postag:SYM' | ||
| 465 | +-0.753388 O b'-2:postag:RB' | ||
| 466 | +-0.759391 O b'-1:lemma:vol' | ||
| 467 | +-0.759391 O b'-2:lemma:1/100' | ||
| 468 | +-0.759391 O b'+2:lemma:1m' | ||
| 469 | +-0.777706 O b'+2:lemma:fnr' | ||
| 470 | +-0.785687 O b'lemma:aerobic' | ||
| 471 | +-0.789592 Air b'+1:postag:JJ' | ||
| 472 | +-0.815302 O b'postag:VBP' | ||
| 473 | +-0.841098 O b'lemma:2h' | ||
| 474 | +-0.841098 O b'-1:lemma:additional' | ||
| 475 | +-0.842931 O b'+2:lemma:mid-log' | ||
| 476 | +-0.851282 O b'+2:lemma:then' | ||
| 477 | +-0.861129 O b'+1:lemma:until' | ||
| 478 | +-0.862940 Supp b'-2:postag:JJ' | ||
| 479 | +-0.870874 O b'+2:postag:-RRB-' | ||
| 480 | +-0.875415 O b'-2:lemma:2' | ||
| 481 | +-0.885220 O b'lemma:of' | ||
| 482 | +-0.896666 O b'-1:lemma:30' | ||
| 483 | +-0.902553 Air b'postag:NN' | ||
| 484 | +-0.931783 O b'+2:lemma:+' | ||
| 485 | +-0.932080 O b'-2:postag:DT' | ||
| 486 | +-1.044263 O b'+2:lemma:b' | ||
| 487 | +-1.102463 O b'lemma:rifampicin' | ||
| 488 | +-1.119605 O b'lemma:\xce\xb4fur' | ||
| 489 | +-1.163234 O b'lemma:media' | ||
| 490 | +-1.202846 O b'-1:lemma:ph' | ||
| 491 | +-1.209159 O b'-1:lemma:nsrr' | ||
| 492 | +-1.238185 O b'-1:lemma:2' | ||
| 493 | +-1.242160 O b'+1:lemma:at' | ||
| 494 | +-1.252527 Temp b'postag:NN' | ||
| 495 | +-1.263981 Med b'-2:lemma:grow' | ||
| 496 | +-1.295021 O b'-2:lemma:0.3' | ||
| 497 | +-1.322790 Phase b'-1:postag:JJ' | ||
| 498 | +-1.350768 O b'-1:lemma:IP' | ||
| 499 | +-1.357106 Gtype b'+2:lemma:cra' | ||
| 500 | +-1.384802 O b'+1:lemma:in' | ||
| 501 | +-1.421905 O b'+1:lemma:2.0' | ||
| 502 | +-1.436909 OD b'+1:postag:NN' | ||
| 503 | +-1.437140 Anti b'+2:lemma:polyclonal' | ||
| 504 | +-1.442674 Supp b'+2:lemma:2' | ||
| 505 | +-1.474029 O b'-1:postag:VBG' | ||
| 506 | +-1.510725 O b'-1:lemma:1' | ||
| 507 | +-1.511208 O b'+2:lemma:rifampicin' | ||
| 508 | +-1.539773 Supp b'+2:lemma:1' | ||
| 509 | +-1.576652 O b'-1:lemma:sample' | ||
| 510 | +-1.596285 Supp b'+2:postag:CD' | ||
| 511 | +-1.602706 Supp b'+2:lemma:fructose' | ||
| 512 | +-1.609888 OD b'+2:lemma:aerobically' | ||
| 513 | +-1.653266 O b'-2:lemma:rifampicin' | ||
| 514 | +-1.693828 O b'lemma:30' | ||
| 515 | +-1.745628 Supp b'postag:JJ' | ||
| 516 | +-1.754845 Phase b'postag:JJ' | ||
| 517 | +-2.081244 Gtype b'postag:VBG' | ||
| 518 | +-2.085569 O b'lemma:0.3' | ||
| 519 | +-2.233412 O b'+1:lemma:1' | ||
| 520 | +-2.309269 Anti b'postag:NNP' | ||
| 521 | +-2.656990 O b'+1:lemma:2' | ||
| 522 | +-3.924521 O b'-1:lemma::' | ||
| 523 | +-4.650524 O b'-1:lemma:_' | ||
| 524 | + |
CRF/reports/report_Run_6_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.044162082189650204, 'c2': 0.029804343353737328} | ||
| 5 | +best CV score:0.8706581096952577 | ||
| 6 | +model size: 0.14M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7969827918323339 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.818 0.818 0.818 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 1.000 1.000 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 0.923 0.828 0.873 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.875 0.824 0.848 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.752 0.813 0.781 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.815 0.787 0.797 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Supp -> Supp 5.670083 | ||
| 32 | +Temp -> Temp 5.254231 | ||
| 33 | +Agit -> Agit 5.011354 | ||
| 34 | +Med -> Med 4.713332 | ||
| 35 | +OD -> OD 4.391989 | ||
| 36 | +Anti -> Anti 4.030410 | ||
| 37 | +O -> O 3.948161 | ||
| 38 | +Gtype -> Gtype 3.922534 | ||
| 39 | +Phase -> Phase 3.864108 | ||
| 40 | +Gversion -> Gversion 3.673104 | ||
| 41 | +Air -> Air 3.570167 | ||
| 42 | +Technique -> Technique 3.152316 | ||
| 43 | +pH -> pH 2.370151 | ||
| 44 | +Substrain -> Gtype 1.132148 | ||
| 45 | +O -> Technique 0.880743 | ||
| 46 | +Air -> O 0.699229 | ||
| 47 | +Supp -> O 0.507469 | ||
| 48 | +O -> Supp 0.436503 | ||
| 49 | +Gtype -> Supp 0.431300 | ||
| 50 | +Technique -> Air 0.416894 | ||
| 51 | +Gtype -> Air 0.341610 | ||
| 52 | +Temp -> O 0.264669 | ||
| 53 | +O -> Gtype 0.262204 | ||
| 54 | +O -> Temp 0.066407 | ||
| 55 | +Med -> O 0.014255 | ||
| 56 | +pH -> O 0.001942 | ||
| 57 | +OD -> Technique -0.000000 | ||
| 58 | +Supp -> Air -0.000026 | ||
| 59 | +Supp -> Gversion -0.000029 | ||
| 60 | +Med -> Air -0.000244 | ||
| 61 | +O -> Anti -0.000275 | ||
| 62 | +Gversion -> Technique -0.000419 | ||
| 63 | +Air -> Technique -0.005983 | ||
| 64 | +Gversion -> Gtype -0.043836 | ||
| 65 | +Supp -> Phase -0.058360 | ||
| 66 | +Technique -> Supp -0.061859 | ||
| 67 | +Gtype -> Substrain -0.064135 | ||
| 68 | +Phase -> O -0.078917 | ||
| 69 | +Phase -> Air -0.082322 | ||
| 70 | +Gtype -> Temp -0.084430 | ||
| 71 | +OD -> O -0.091084 | ||
| 72 | +Phase -> Med -0.098419 | ||
| 73 | +O -> Phase -0.106844 | ||
| 74 | +Anti -> Supp -0.110681 | ||
| 75 | +Gtype -> OD -0.111764 | ||
| 76 | +OD -> Supp -0.112906 | ||
| 77 | +O -> Gversion -0.170423 | ||
| 78 | +Gversion -> Supp -0.175049 | ||
| 79 | +Air -> Phase -0.184406 | ||
| 80 | +Supp -> Gtype -0.187183 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +O -> Anti -0.000275 | ||
| 85 | +Gversion -> Technique -0.000419 | ||
| 86 | +Air -> Technique -0.005983 | ||
| 87 | +Gversion -> Gtype -0.043836 | ||
| 88 | +Supp -> Phase -0.058360 | ||
| 89 | +Technique -> Supp -0.061859 | ||
| 90 | +Gtype -> Substrain -0.064135 | ||
| 91 | +Phase -> O -0.078917 | ||
| 92 | +Phase -> Air -0.082322 | ||
| 93 | +Gtype -> Temp -0.084430 | ||
| 94 | +OD -> O -0.091084 | ||
| 95 | +Phase -> Med -0.098419 | ||
| 96 | +O -> Phase -0.106844 | ||
| 97 | +Anti -> Supp -0.110681 | ||
| 98 | +Gtype -> OD -0.111764 | ||
| 99 | +OD -> Supp -0.112906 | ||
| 100 | +O -> Gversion -0.170423 | ||
| 101 | +Gversion -> Supp -0.175049 | ||
| 102 | +Air -> Phase -0.184406 | ||
| 103 | +Supp -> Gtype -0.187183 | ||
| 104 | +Technique -> OD -0.190052 | ||
| 105 | +Gtype -> Gversion -0.198104 | ||
| 106 | +Phase -> Technique -0.204487 | ||
| 107 | +Phase -> Supp -0.209738 | ||
| 108 | +Gtype -> Phase -0.221329 | ||
| 109 | +Phase -> OD -0.244051 | ||
| 110 | +Anti -> Gtype -0.311771 | ||
| 111 | +Air -> Med -0.321626 | ||
| 112 | +Air -> Gtype -0.339099 | ||
| 113 | +Air -> Temp -0.358085 | ||
| 114 | +Air -> Agit -0.378119 | ||
| 115 | +Gtype -> Anti -0.413121 | ||
| 116 | +O -> Med -0.423939 | ||
| 117 | +Agit -> Air -0.427878 | ||
| 118 | +Technique -> pH -0.452260 | ||
| 119 | +Technique -> Gtype -0.453250 | ||
| 120 | +Gversion -> O -0.456685 | ||
| 121 | +Supp -> Technique -0.471510 | ||
| 122 | +Temp -> Med -0.480258 | ||
| 123 | +OD -> Air -0.496263 | ||
| 124 | +Air -> Supp -0.503893 | ||
| 125 | +Technique -> O -0.618334 | ||
| 126 | +O -> OD -0.660464 | ||
| 127 | +Gtype -> Med -0.752077 | ||
| 128 | +Gtype -> Technique -0.755956 | ||
| 129 | +Gtype -> O -0.808067 | ||
| 130 | +Supp -> Med -0.862326 | ||
| 131 | +Substrain -> O -1.074379 | ||
| 132 | +O -> Air -1.358505 | ||
| 133 | +Med -> Supp -1.446843 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +4.573871 O b'lemma:2' | ||
| 138 | +4.517132 Anti b'-2:lemma:antibody' | ||
| 139 | +3.918900 O b'lemma:1' | ||
| 140 | +3.762153 O b'-2:lemma:_' | ||
| 141 | +3.676989 Air b'word[:2]:Ae' | ||
| 142 | +3.513121 Technique b'word[:2]:Ch' | ||
| 143 | +3.487470 O b'word[:2]:re' | ||
| 144 | +3.453615 O b'lemma:3' | ||
| 145 | +3.410530 Gtype b'word[:1]:\xce\x94' | ||
| 146 | +3.253388 Phase b'-2:lemma:phase' | ||
| 147 | +3.161045 Supp b'lemma:acetate' | ||
| 148 | +3.107117 O b'lemma:with' | ||
| 149 | +3.044380 O b'lemma:_' | ||
| 150 | +3.044380 O b'word[:1]:_' | ||
| 151 | +2.983175 OD b'word[:1]:O' | ||
| 152 | +2.941437 Supp b'-1:lemma:with' | ||
| 153 | +2.930652 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 154 | +2.920959 Phase b'lemma:mid-log' | ||
| 155 | +2.889906 Air b'lemma:anaerobic' | ||
| 156 | +2.870929 O b'lemma:a' | ||
| 157 | +2.822057 Air b'word[:2]:An' | ||
| 158 | +2.820469 Supp b'lemma:arginine' | ||
| 159 | +2.801859 Air b'word[:1]:A' | ||
| 160 | +2.780610 Supp b'-1:lemma:Cra' | ||
| 161 | +2.651063 O b'lemma:-' | ||
| 162 | +2.650338 Supp b'-1:lemma:final' | ||
| 163 | +2.629666 O b'-2:lemma:myc' | ||
| 164 | +2.548913 O b'-1:lemma:tag' | ||
| 165 | +2.540238 Supp b'+2:lemma:iptg' | ||
| 166 | +2.444337 Supp b'word[:1]:I' | ||
| 167 | +2.424276 O b'-2:lemma:medium' | ||
| 168 | +2.416308 O b'+2:lemma:\xc2\xb0c' | ||
| 169 | +2.367304 Technique b'word[:2]:RN' | ||
| 170 | +2.366428 Supp b'-1:postag:CC' | ||
| 171 | +2.323976 Supp b'+1:lemma:1' | ||
| 172 | +2.323481 Anti b'+1:lemma:antibody' | ||
| 173 | +2.296032 O b'lemma:.' | ||
| 174 | +2.296032 O b'postag:.' | ||
| 175 | +2.296032 O b'postag[:1]:.' | ||
| 176 | +2.293419 Gtype b'-2:lemma:genotype/variation' | ||
| 177 | +2.263949 Substrain b'word[:2]:MG' | ||
| 178 | +2.253514 Anti b'+2:lemma:antibody' | ||
| 179 | +2.234802 Supp b'lemma:Iron' | ||
| 180 | +2.234802 Supp b'word[:2]:Ir' | ||
| 181 | +2.234802 Supp b'-2:lemma:Anaerobic' | ||
| 182 | +2.224903 Supp b'lemma:pq' | ||
| 183 | +2.224903 Supp b'word[:2]:PQ' | ||
| 184 | +2.221321 Gtype b'lemma:type' | ||
| 185 | +2.221321 Gtype b'word[:2]:ty' | ||
| 186 | +2.211713 Supp b'+1:lemma:\xc2\xb5m' | ||
| 187 | +2.185949 O b'-1:lemma:glucose' | ||
| 188 | +2.178554 Gtype b'word[:2]:Fl' | ||
| 189 | +2.176096 Gtype b'hGreek' | ||
| 190 | +2.169798 O b'+1:postag:RB' | ||
| 191 | +2.145528 O b'-1:lemma:0.3' | ||
| 192 | +2.123487 Gtype b'lemma:wt' | ||
| 193 | +2.107697 Supp b'-1:lemma:_' | ||
| 194 | +2.097155 O b'word[:2]:Cr' | ||
| 195 | +2.082178 Supp b'lemma:nacl' | ||
| 196 | +2.060364 Med b'lemma:MOPS' | ||
| 197 | +2.060364 Med b'word[:2]:MO' | ||
| 198 | +2.053231 Med b'+2:postag:CC' | ||
| 199 | +2.051275 Supp b'word[:2]:ni' | ||
| 200 | +2.042917 pH b'word[:2]:pH' | ||
| 201 | +2.031673 O b'word[:2]:ge' | ||
| 202 | +2.021947 Substrain b'word[:1]:M' | ||
| 203 | +2.011615 O b'lemma:argr' | ||
| 204 | +2.001860 O b'-2:lemma:fructose' | ||
| 205 | +1.996958 O b'lemma:purr' | ||
| 206 | +1.986551 O b'+1:lemma:pq' | ||
| 207 | +1.984749 O b'word[:1]:B' | ||
| 208 | +1.982332 Technique b'word[:1]:R' | ||
| 209 | +1.981990 Phase b'lemma:stationary' | ||
| 210 | +1.934014 O b'word[:2]:Rp' | ||
| 211 | +1.932482 O b'-1:lemma:anaerobic' | ||
| 212 | +1.924219 Gtype b'lemma:\xe2\x88\x86' | ||
| 213 | +1.924219 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 214 | +1.895338 Supp b'+1:lemma:2' | ||
| 215 | +1.878701 Gtype b'word[:1]:W' | ||
| 216 | +1.876510 O b'word[:1]:G' | ||
| 217 | +1.858152 Gtype b'-2:postag:DT' | ||
| 218 | +1.836059 O b'+2:lemma:cra' | ||
| 219 | +1.828873 O b'word[:2]:Pu' | ||
| 220 | +1.827035 OD b'word[:2]:OD' | ||
| 221 | +1.822540 O b'word[:1]:S' | ||
| 222 | +1.806311 O b'postag::' | ||
| 223 | +1.806311 O b'postag[:1]::' | ||
| 224 | +1.800600 pH b'+1:postag:CD' | ||
| 225 | +1.791696 O b'word[:1]:c' | ||
| 226 | +1.789516 O b'-2:lemma:ChIP-Seq' | ||
| 227 | +1.783076 O b'+2:lemma:70' | ||
| 228 | +1.779545 Air b'lemma:Aerobic' | ||
| 229 | +1.771582 Gversion b'lemma:chip-seq' | ||
| 230 | +1.766211 Med b'word[:1]:L' | ||
| 231 | +1.758126 O b'+2:lemma:fructose' | ||
| 232 | +1.756952 O b'-1:lemma:media' | ||
| 233 | +1.756327 O b'lemma:b' | ||
| 234 | +1.748259 O b'word[:2]:ch' | ||
| 235 | +1.737653 O b'+1:lemma:250' | ||
| 236 | +1.731658 Supp b'lemma:nitrate' | ||
| 237 | +1.713215 Gtype b'+1:lemma:type' | ||
| 238 | +1.710562 Med b'word[:1]:M' | ||
| 239 | +1.691656 Phase b'+1:lemma:phase' | ||
| 240 | +1.685599 Gtype b'word[:1]:d' | ||
| 241 | +1.683678 Temp b'+1:lemma:\xc2\xb0c' | ||
| 242 | +1.683098 Supp b'-1:lemma:+' | ||
| 243 | +1.680349 O b'-1:lemma:aerobically' | ||
| 244 | +1.679518 Supp b'+2:lemma:for' | ||
| 245 | +1.667720 Phase b'word[:2]:ex' | ||
| 246 | +1.664701 Supp b'word[:2]:ac' | ||
| 247 | +1.660497 Gtype b'word[:1]:F' | ||
| 248 | +1.651765 Gtype b'word[:2]:PK' | ||
| 249 | +1.639770 Gtype b'lemma:flag-tag' | ||
| 250 | +1.639770 Gtype b'-1:lemma:c-terminal' | ||
| 251 | +1.636705 Supp b'-2:lemma:argr' | ||
| 252 | +1.635237 Gtype b'word[:2]:WT' | ||
| 253 | +1.629154 O b'lemma:Nac' | ||
| 254 | +1.628538 Air b'word[:1]:a' | ||
| 255 | +1.628414 Med b'lemma:minimal' | ||
| 256 | +1.627212 O b'word[:2]:ha' | ||
| 257 | +1.626169 Gtype b'+1:lemma:with' | ||
| 258 | +1.625888 O b'+1:postag:NNP' | ||
| 259 | +1.619736 O b'+1:lemma:chip-seq' | ||
| 260 | +1.607311 Supp b'lemma:fructose' | ||
| 261 | +1.604728 Gtype b'-2:lemma:genotype' | ||
| 262 | +1.603557 Gtype b'lemma:nsrr' | ||
| 263 | +1.603557 Gtype b'word[:2]:Ns' | ||
| 264 | +1.603074 Supp b'lemma:glucose' | ||
| 265 | +1.602745 O b'-1:lemma:\xc2\xb0c' | ||
| 266 | +1.598758 Med b'+2:lemma:b2' | ||
| 267 | +1.598354 Gtype b'-1:lemma:_' | ||
| 268 | +1.594027 Supp b'lemma:Leu' | ||
| 269 | +1.594027 Supp b'word[:2]:Le' | ||
| 270 | +1.594027 Supp b'-2:lemma:Lrp' | ||
| 271 | +1.591661 O b'lemma:A' | ||
| 272 | +1.582547 O b'-1:lemma:Aerobic' | ||
| 273 | +1.575327 Supp b'+1:lemma:_' | ||
| 274 | +1.570281 O b'word[:1]:R' | ||
| 275 | +1.568703 O b'-2:lemma:flagtag' | ||
| 276 | +1.565893 Phase b'+2:lemma:o.d.' | ||
| 277 | +1.551889 Supp b'lemma:no3' | ||
| 278 | +1.551889 Supp b'word[:2]:NO' | ||
| 279 | +1.548644 Gtype b'+1:lemma:flagtag' | ||
| 280 | +1.540544 Supp b'-2:lemma:media' | ||
| 281 | +1.538313 O b'+1:lemma:od600' | ||
| 282 | +1.531185 Supp b'-2:lemma:induce' | ||
| 283 | +1.528143 Temp b'-1:lemma:43' | ||
| 284 | +1.521079 Supp b'word[:2]:Fe' | ||
| 285 | +1.519815 Gtype b'+2:lemma:glucose' | ||
| 286 | +1.509812 Supp b'word[:2]:gl' | ||
| 287 | +1.505012 O b'-1:lemma:lb' | ||
| 288 | +1.504397 Supp b'lemma:Adenine' | ||
| 289 | +1.504397 Supp b'word[:2]:Ad' | ||
| 290 | +1.493982 Air b'-2:lemma:%' | ||
| 291 | +1.493425 Technique b'word[:1]:C' | ||
| 292 | +1.484047 Technique b'lemma:ChIP-exo' | ||
| 293 | +1.484009 Supp b'+2:lemma:rifampicin' | ||
| 294 | +1.481786 Supp b'-2:lemma:purr' | ||
| 295 | +1.476648 Supp b'-1:lemma:sodium' | ||
| 296 | +1.476648 Supp b'+2:lemma:1/100' | ||
| 297 | +1.475748 Temp b'lemma:43' | ||
| 298 | +1.475748 Temp b'word[:2]:43' | ||
| 299 | +1.475312 Anti b'word[:2]:an' | ||
| 300 | +1.472220 Temp b'-2:lemma:\xcf\x8332' | ||
| 301 | +1.460306 Supp b'-2:lemma:condition' | ||
| 302 | +1.458045 Temp b'-1:lemma:\xcf\x8332' | ||
| 303 | +1.452126 O b'postag:IN' | ||
| 304 | +1.452126 O b'postag[:1]:I' | ||
| 305 | +1.452126 O b'postag[:2]:IN' | ||
| 306 | +1.446316 Gtype b'-1:lemma:rpob' | ||
| 307 | +1.445179 O b'+2:postag:JJ' | ||
| 308 | +1.441264 Gtype b'word[:1]:w' | ||
| 309 | +1.409352 Supp b'-2:lemma:agent' | ||
| 310 | +1.398563 Phase b'word[:1]:e' | ||
| 311 | +1.391992 Gtype b'-2:lemma:delta' | ||
| 312 | +1.390517 Strain b'+1:lemma:substr' | ||
| 313 | +1.390517 Strain b'-2:lemma:str' | ||
| 314 | +1.386478 O b'word[:1]:-' | ||
| 315 | +1.383676 O b'-2:lemma:no3' | ||
| 316 | +1.382867 Supp b'word[:1]:N' | ||
| 317 | +1.379586 O b'lemma:growth' | ||
| 318 | +1.375672 O b'word[:2]:In' | ||
| 319 | +1.373601 O b'-2:lemma:=' | ||
| 320 | +1.372653 Air b'+1:postag:IN' | ||
| 321 | +1.369649 Air b'-1:lemma:ChIP-Seq' | ||
| 322 | +1.366267 Technique b'+2:lemma:ph5' | ||
| 323 | +1.363638 O b'postag:CC' | ||
| 324 | +1.363638 O b'postag[:2]:CC' | ||
| 325 | +1.362930 Air b'-2:lemma:IP' | ||
| 326 | +1.357050 Gtype b'-1:postag:VBG' | ||
| 327 | +1.356760 Gtype b'word[:2]:Ar' | ||
| 328 | +1.356125 pH b'word[:1]:p' | ||
| 329 | +1.352664 Gtype b'lemma:arca8myc' | ||
| 330 | +1.352664 Gtype b'-2:lemma:chip-arca' | ||
| 331 | +1.351882 Gversion b'-2:lemma:build' | ||
| 332 | +1.351286 Substrain b'+1:lemma:phtpg' | ||
| 333 | +1.349261 Gtype b'symb' | ||
| 334 | +1.346252 Gtype b'-2:lemma:affyexp' | ||
| 335 | +1.345488 Air b'lemma:aerobic' | ||
| 336 | +1.336503 pH b'lemma:ph5' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.330183 O b'lemma:aerobically' | ||
| 341 | +-0.333091 Gtype b'word[:1]:-' | ||
| 342 | +-0.337229 O b'+2:lemma:for' | ||
| 343 | +-0.338988 Anti b'+2:postag:JJ' | ||
| 344 | +-0.340025 Phase b'+1:lemma:pahse' | ||
| 345 | +-0.345106 O b'+1:lemma:phosphate' | ||
| 346 | +-0.350740 O b'-2:lemma:fresh' | ||
| 347 | +-0.359220 Supp b'+2:postag:NNP' | ||
| 348 | +-0.360686 O b'lemma:glucose' | ||
| 349 | +-0.363021 Technique b'lemma:chip-exo' | ||
| 350 | +-0.365042 O b'lemma:sodium' | ||
| 351 | +-0.374157 Supp b'+2:postag::' | ||
| 352 | +-0.387303 O b'-2:lemma:a' | ||
| 353 | +-0.389190 Supp b'-2:postag:NNS' | ||
| 354 | +-0.391761 O b'+2:lemma:0.2' | ||
| 355 | +-0.392117 O b'-1:lemma:g/l' | ||
| 356 | +-0.393789 O b'lemma:250' | ||
| 357 | +-0.396500 Supp b'postag:JJ' | ||
| 358 | +-0.398947 Supp b'postag[:1]:J' | ||
| 359 | +-0.398947 Supp b'postag[:2]:JJ' | ||
| 360 | +-0.401893 O b'-2:postag:SYM' | ||
| 361 | +-0.403955 O b'word[:2]:me' | ||
| 362 | +-0.405899 O b'-1:lemma:contain' | ||
| 363 | +-0.407741 O b'+2:lemma:at' | ||
| 364 | +-0.407872 O b'-2:postag:DT' | ||
| 365 | +-0.409919 Vess b'hUpper' | ||
| 366 | +-0.409919 Vess b'hLower' | ||
| 367 | +-0.416096 Air b'postag:NN' | ||
| 368 | +-0.419923 Supp b'-2:postag:NN' | ||
| 369 | +-0.420193 Supp b'-1:lemma:-lrb-' | ||
| 370 | +-0.422451 O b'+1:lemma:supplement' | ||
| 371 | +-0.426042 Med b'+1:postag:IN' | ||
| 372 | +-0.428819 Supp b'+2:lemma:acetate' | ||
| 373 | +-0.433421 Temp b'postag:NN' | ||
| 374 | +-0.442149 Supp b'+2:postag:NN' | ||
| 375 | +-0.442542 O b'word[:1]:F' | ||
| 376 | +-0.448178 Phase b'postag:JJ' | ||
| 377 | +-0.453154 Temp b'hGreek' | ||
| 378 | +-0.454481 O b'+2:lemma:genome' | ||
| 379 | +-0.456569 Supp b'-2:lemma:grow' | ||
| 380 | +-0.456675 Supp b'+2:lemma:glucose' | ||
| 381 | +-0.461633 O b'lemma:methanol' | ||
| 382 | +-0.461633 O b'-2:lemma:dissolve' | ||
| 383 | +-0.463555 Supp b'-1:postag:-LRB-' | ||
| 384 | +-0.470483 O b'word[:2]:ce' | ||
| 385 | +-0.474148 O b'word[:1]:K' | ||
| 386 | +-0.478774 OD b'+2:postag:NN' | ||
| 387 | +-0.479416 O b'-1:lemma:iptg' | ||
| 388 | +-0.482417 O b'-1:lemma:ml' | ||
| 389 | +-0.482582 Med b'-2:postag:VBN' | ||
| 390 | +-0.493533 O b'+1:postag:IN' | ||
| 391 | +-0.494661 O b'-2:lemma:phase' | ||
| 392 | +-0.500742 O b'lemma:37' | ||
| 393 | +-0.500742 O b'word[:2]:37' | ||
| 394 | +-0.503770 Gtype b'+1:lemma:-rrb-' | ||
| 395 | +-0.509384 O b'-1:lemma:grow' | ||
| 396 | +-0.512233 O b'+1:lemma:m' | ||
| 397 | +-0.512351 Gtype b'word[:1]:h' | ||
| 398 | +-0.529387 O b'+2:lemma:reference' | ||
| 399 | +-0.532265 O b'lemma:anaerobically' | ||
| 400 | +-0.540496 O b'word[:2]:mg' | ||
| 401 | +-0.548480 O b'word[:2]:pH' | ||
| 402 | +-0.550459 Gtype b'-1:lemma:mg1655' | ||
| 403 | +-0.550831 Supp b'-1:postag:NNP' | ||
| 404 | +-0.554325 O b'word[:2]:Fe' | ||
| 405 | +-0.555780 O b'+2:lemma:.' | ||
| 406 | +-0.555780 O b'+2:postag:.' | ||
| 407 | +-0.565490 O b'word[:1]:\xce\x94' | ||
| 408 | +-0.573716 O b'lemma:aerobic' | ||
| 409 | +-0.581553 O b'-2:postag:RB' | ||
| 410 | +-0.582735 O b'-1:lemma:dissolve' | ||
| 411 | +-0.582735 O b'+1:lemma:methanol' | ||
| 412 | +-0.583732 O b'-1:lemma:fresh' | ||
| 413 | +-0.584010 O b'-2:lemma:nh4cl' | ||
| 414 | +-0.585197 O b'word[:2]:ri' | ||
| 415 | +-0.587643 Phase b'postag[:1]:J' | ||
| 416 | +-0.587643 Phase b'postag[:2]:JJ' | ||
| 417 | +-0.594097 O b'-2:lemma:genome' | ||
| 418 | +-0.594675 Supp b'-2:lemma:treat' | ||
| 419 | +-0.594880 O b'+1:lemma:1m' | ||
| 420 | +-0.594880 O b'-2:lemma:vol' | ||
| 421 | +-0.598558 O b'-1:lemma:30' | ||
| 422 | +-0.612132 O b'lemma:2h' | ||
| 423 | +-0.612132 O b'-1:lemma:additional' | ||
| 424 | +-0.612132 O b'word[:2]:2h' | ||
| 425 | +-0.614071 O b'-2:lemma:control' | ||
| 426 | +-0.625762 O b'-1:lemma:until' | ||
| 427 | +-0.628113 Agit b'hUpper' | ||
| 428 | +-0.628113 Agit b'hLower' | ||
| 429 | +-0.629464 O b'+1:postag:VBG' | ||
| 430 | +-0.630986 O b'-2:lemma:aerobically' | ||
| 431 | +-0.640153 O b'-2:lemma:pahse' | ||
| 432 | +-0.640520 O b'lemma:media' | ||
| 433 | +-0.645230 O b'+2:lemma:fnr' | ||
| 434 | +-0.647923 O b'lemma:\xe2\x88\x86' | ||
| 435 | +-0.647923 O b'word[:1]:\xe2\x88\x86' | ||
| 436 | +-0.648261 Supp b'+1:lemma:-lrb-' | ||
| 437 | +-0.648721 O b'+2:lemma:10' | ||
| 438 | +-0.649047 Med b'symb' | ||
| 439 | +-0.658009 O b'-1:lemma:vol' | ||
| 440 | +-0.658009 O b'-2:lemma:1/100' | ||
| 441 | +-0.658009 O b'+2:lemma:1m' | ||
| 442 | +-0.658618 O b'lemma:rifampicin' | ||
| 443 | +-0.660887 O b'+1:lemma:rep2' | ||
| 444 | +-0.661727 Supp b'+1:postag:-LRB-' | ||
| 445 | +-0.665690 Supp b'hGreek' | ||
| 446 | +-0.675815 O b'-1:lemma:37' | ||
| 447 | +-0.677865 O b'word[:2]:0.' | ||
| 448 | +-0.679218 O b'+1:lemma:g/l' | ||
| 449 | +-0.696412 O b'lemma:30' | ||
| 450 | +-0.698147 O b'-1:lemma:cra' | ||
| 451 | +-0.699397 Supp b'lemma:1' | ||
| 452 | +-0.701578 O b'-2:lemma:supplement' | ||
| 453 | +-0.702738 O b'-2:postag::' | ||
| 454 | +-0.703354 O b'-1:lemma:IP' | ||
| 455 | +-0.710621 O b'+2:postag:-RRB-' | ||
| 456 | +-0.719378 Temp b'-2:postag:NN' | ||
| 457 | +-0.722820 O b'+1:lemma:phase' | ||
| 458 | +-0.725117 O b'word[:1]:M' | ||
| 459 | +-0.725209 O b'word[:1]:L' | ||
| 460 | +-0.728868 Supp b'+1:lemma:,' | ||
| 461 | +-0.728868 Supp b'+1:postag:,' | ||
| 462 | +-0.729747 O b'-1:lemma:co2' | ||
| 463 | +-0.732049 O b'word[:1]:0' | ||
| 464 | +-0.732854 O b'lemma:anaerobic' | ||
| 465 | +-0.737211 Agit b'symb' | ||
| 466 | +-0.737781 O b'+1:lemma:_' | ||
| 467 | +-0.738890 O b'+1:lemma:until' | ||
| 468 | +-0.746903 O b'-1:lemma:2' | ||
| 469 | +-0.753105 Anti b'+2:lemma:polyclonal' | ||
| 470 | +-0.756009 Supp b'+1:postag:NNS' | ||
| 471 | +-0.762043 Supp b'word[:2]:an' | ||
| 472 | +-0.766144 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 473 | +-0.782585 O b'-1:lemma:1' | ||
| 474 | +-0.783172 Technique b'postag:NN' | ||
| 475 | +-0.791028 O b'-2:lemma:dpd' | ||
| 476 | +-0.791117 Gtype b'postag[:1]:V' | ||
| 477 | +-0.791117 Gtype b'postag[:2]:VB' | ||
| 478 | +-0.795652 O b'+2:lemma:mid-log' | ||
| 479 | +-0.814979 O b'lemma:fructose' | ||
| 480 | +-0.818308 O b'+2:lemma:tag' | ||
| 481 | +-0.819349 O b'word[:1]:4' | ||
| 482 | +-0.827940 Phase b'-1:postag:JJ' | ||
| 483 | +-0.840950 O b'+2:lemma:b' | ||
| 484 | +-0.843002 O b'+2:lemma:+' | ||
| 485 | +-0.847830 Supp b'-2:postag:JJ' | ||
| 486 | +-0.872363 O b'word[:1]:d' | ||
| 487 | +-0.873207 O b'lemma:nitrate' | ||
| 488 | +-0.882236 O b'+2:lemma:250' | ||
| 489 | +-0.891744 O b'-2:lemma:IP' | ||
| 490 | +-0.894472 O b'-2:lemma::' | ||
| 491 | +-0.913166 O b'-2:lemma:0.3' | ||
| 492 | +-0.917548 O b'+2:lemma:then' | ||
| 493 | +-0.918623 Air b'-1:postag:JJ' | ||
| 494 | +-0.971796 O b'lemma:0.3' | ||
| 495 | +-0.992363 Anti b'+1:lemma:anti-fur' | ||
| 496 | +-1.000844 O b'word[:2]:fl' | ||
| 497 | +-1.013750 O b'+1:lemma:2.0' | ||
| 498 | +-1.026340 O b'lemma:mid-log' | ||
| 499 | +-1.036499 O b'word[:2]:ni' | ||
| 500 | +-1.065659 Phase b'hUpper' | ||
| 501 | +-1.065659 Phase b'hLower' | ||
| 502 | +-1.068286 O b'-1:postag::' | ||
| 503 | +-1.083222 O b'word[:2]:30' | ||
| 504 | +-1.097164 O b'+1:lemma:+' | ||
| 505 | +-1.104071 O b'-2:lemma:until' | ||
| 506 | +-1.119190 Supp b'word[:1]:C' | ||
| 507 | +-1.133243 Supp b'symb' | ||
| 508 | +-1.144789 O b'-1:lemma:\xe2\x88\x86' | ||
| 509 | +-1.146624 O b'-2:lemma:rifampicin' | ||
| 510 | +-1.150733 O b'-1:lemma:ph' | ||
| 511 | +-1.195095 Gtype b'word[:1]:C' | ||
| 512 | +-1.198322 OD b'+1:postag:NN' | ||
| 513 | +-1.211645 Supp b'+2:lemma:1' | ||
| 514 | +-1.218440 O b'-1:lemma:nsrr' | ||
| 515 | +-1.228481 Anti b'postag:NNP' | ||
| 516 | +-1.235955 Med b'+2:postag:VBN' | ||
| 517 | +-1.254294 O b'word[:1]:N' | ||
| 518 | +-1.260075 O b'-2:lemma:media' | ||
| 519 | +-1.274766 O b'postag:VBP' | ||
| 520 | +-1.280395 O b'-1:lemma:sample' | ||
| 521 | +-1.291770 Supp b'+2:postag:CD' | ||
| 522 | +-1.323295 Gtype b'+2:lemma:cra' | ||
| 523 | +-1.334984 O b'lemma:wt' | ||
| 524 | +-1.365178 Supp b'+2:lemma:2' | ||
| 525 | +-1.369037 O b'+2:lemma:rifampicin' | ||
| 526 | +-1.402494 O b'+1:lemma:in' | ||
| 527 | +-1.453133 O b'+1:lemma:at' | ||
| 528 | +-1.489269 O b'-1:lemma:rpob' | ||
| 529 | +-1.489467 Med b'-2:lemma:grow' | ||
| 530 | +-1.507468 O b'-1:lemma:final' | ||
| 531 | +-1.645797 O b'word[:1]:P' | ||
| 532 | +-1.693990 Supp b'+2:lemma:fructose' | ||
| 533 | +-1.865218 O b'+1:lemma:1' | ||
| 534 | +-1.868753 O b'-1:postag:VBG' | ||
| 535 | +-1.947849 O b'+1:lemma:2' | ||
| 536 | +-1.949557 OD b'+2:lemma:aerobically' | ||
| 537 | +-1.994778 O b'word[:2]:Ch' | ||
| 538 | +-3.488442 O b'-1:lemma::' | ||
| 539 | +-3.970946 O b'-1:lemma:_' | ||
| 540 | + |
CRF/reports/report_Run_6_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.216886783747496, 'c2': 0.06401679314680564} | ||
| 5 | +best CV score:0.8628969551909399 | ||
| 6 | +model size: 0.09M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7959513846538584 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.943 0.971 53 | ||
| 15 | + Temp 0.923 0.828 0.873 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.543 0.362 0.435 69 | ||
| 20 | + Anti 0.917 1.000 0.957 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.814 0.824 0.819 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.796 0.813 0.804 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.821 0.778 0.796 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 5.554988 | ||
| 32 | +Supp -> Supp 5.075372 | ||
| 33 | +Temp -> Temp 4.962367 | ||
| 34 | +OD -> OD 4.808863 | ||
| 35 | +Med -> Med 4.722789 | ||
| 36 | +Air -> Air 4.233855 | ||
| 37 | +O -> O 3.842262 | ||
| 38 | +Anti -> Anti 3.839550 | ||
| 39 | +Phase -> Phase 3.786109 | ||
| 40 | +Gversion -> Gversion 3.561515 | ||
| 41 | +Gtype -> Gtype 3.500625 | ||
| 42 | +Technique -> Technique 2.701288 | ||
| 43 | +pH -> pH 2.368505 | ||
| 44 | +Air -> O 1.248758 | ||
| 45 | +O -> Supp 1.184530 | ||
| 46 | +Supp -> O 1.041831 | ||
| 47 | +O -> Technique 0.884981 | ||
| 48 | +Substrain -> Gtype 0.835591 | ||
| 49 | +Gtype -> Supp 0.610921 | ||
| 50 | +Med -> O 0.552574 | ||
| 51 | +O -> Gtype 0.514570 | ||
| 52 | +Gtype -> Air 0.471576 | ||
| 53 | +Temp -> O 0.349650 | ||
| 54 | +Technique -> Air 0.330874 | ||
| 55 | +O -> Phase 0.267311 | ||
| 56 | +Phase -> O 0.188152 | ||
| 57 | +O -> Temp 0.115742 | ||
| 58 | +OD -> O 0.034158 | ||
| 59 | +pH -> O 0.026851 | ||
| 60 | +O -> Anti 0.018274 | ||
| 61 | +Supp -> Gtype -0.000011 | ||
| 62 | +Technique -> Supp -0.000552 | ||
| 63 | +O -> OD -0.010291 | ||
| 64 | +Gtype -> Gversion -0.047313 | ||
| 65 | +Anti -> Gtype -0.071853 | ||
| 66 | +Agit -> Air -0.100169 | ||
| 67 | +Gtype -> Anti -0.102605 | ||
| 68 | +Gversion -> O -0.105812 | ||
| 69 | +Supp -> Med -0.143033 | ||
| 70 | +Technique -> pH -0.232213 | ||
| 71 | +Technique -> Gtype -0.267078 | ||
| 72 | +OD -> Air -0.314439 | ||
| 73 | +O -> Air -0.465381 | ||
| 74 | +Gtype -> Med -0.468979 | ||
| 75 | +Technique -> O -0.504446 | ||
| 76 | +Gtype -> Technique -0.550704 | ||
| 77 | +Gtype -> O -0.582351 | ||
| 78 | +Substrain -> O -0.875234 | ||
| 79 | +Med -> Supp -1.007844 | ||
| 80 | + | ||
| 81 | + | ||
| 82 | +Top unlikely transitions: | ||
| 83 | +Agit -> Agit 5.554988 | ||
| 84 | +Supp -> Supp 5.075372 | ||
| 85 | +Temp -> Temp 4.962367 | ||
| 86 | +OD -> OD 4.808863 | ||
| 87 | +Med -> Med 4.722789 | ||
| 88 | +Air -> Air 4.233855 | ||
| 89 | +O -> O 3.842262 | ||
| 90 | +Anti -> Anti 3.839550 | ||
| 91 | +Phase -> Phase 3.786109 | ||
| 92 | +Gversion -> Gversion 3.561515 | ||
| 93 | +Gtype -> Gtype 3.500625 | ||
| 94 | +Technique -> Technique 2.701288 | ||
| 95 | +pH -> pH 2.368505 | ||
| 96 | +Air -> O 1.248758 | ||
| 97 | +O -> Supp 1.184530 | ||
| 98 | +Supp -> O 1.041831 | ||
| 99 | +O -> Technique 0.884981 | ||
| 100 | +Substrain -> Gtype 0.835591 | ||
| 101 | +Gtype -> Supp 0.610921 | ||
| 102 | +Med -> O 0.552574 | ||
| 103 | +O -> Gtype 0.514570 | ||
| 104 | +Gtype -> Air 0.471576 | ||
| 105 | +Temp -> O 0.349650 | ||
| 106 | +Technique -> Air 0.330874 | ||
| 107 | +O -> Phase 0.267311 | ||
| 108 | +Phase -> O 0.188152 | ||
| 109 | +O -> Temp 0.115742 | ||
| 110 | +OD -> O 0.034158 | ||
| 111 | +pH -> O 0.026851 | ||
| 112 | +O -> Anti 0.018274 | ||
| 113 | +Supp -> Gtype -0.000011 | ||
| 114 | +Technique -> Supp -0.000552 | ||
| 115 | +O -> OD -0.010291 | ||
| 116 | +Gtype -> Gversion -0.047313 | ||
| 117 | +Anti -> Gtype -0.071853 | ||
| 118 | +Agit -> Air -0.100169 | ||
| 119 | +Gtype -> Anti -0.102605 | ||
| 120 | +Gversion -> O -0.105812 | ||
| 121 | +Supp -> Med -0.143033 | ||
| 122 | +Technique -> pH -0.232213 | ||
| 123 | +Technique -> Gtype -0.267078 | ||
| 124 | +OD -> Air -0.314439 | ||
| 125 | +O -> Air -0.465381 | ||
| 126 | +Gtype -> Med -0.468979 | ||
| 127 | +Technique -> O -0.504446 | ||
| 128 | +Gtype -> Technique -0.550704 | ||
| 129 | +Gtype -> O -0.582351 | ||
| 130 | +Substrain -> O -0.875234 | ||
| 131 | +Med -> Supp -1.007844 | ||
| 132 | + | ||
| 133 | + | ||
| 134 | +Top positive: | ||
| 135 | +4.945315 O b'lemma:2' | ||
| 136 | +4.341746 Anti b'-2:lemma:antibody' | ||
| 137 | +4.195357 O b'lemma:1' | ||
| 138 | +4.099828 O b'postag:IN' | ||
| 139 | +4.036396 Technique b'lemma[:2]:Ch' | ||
| 140 | +3.544794 O b'lemma:3' | ||
| 141 | +3.385486 O b'-2:lemma:_' | ||
| 142 | +3.361181 Gtype b'lemma[:1]:\xce\xb4' | ||
| 143 | +3.048558 O b'lemma[:2]:re' | ||
| 144 | +2.941595 Air b'lemma[:2]:ae' | ||
| 145 | +2.883410 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 146 | +2.795385 O b'lemma:.' | ||
| 147 | +2.795385 O b'postag:.' | ||
| 148 | +2.774702 O b'lemma:with' | ||
| 149 | +2.761558 O b'postag:CC' | ||
| 150 | +2.733259 Phase b'lemma:mid-log' | ||
| 151 | +2.669708 Technique b'lemma:chipseq' | ||
| 152 | +2.662398 O b'lemma:_' | ||
| 153 | +2.662398 O b'lemma[:1]:_' | ||
| 154 | +2.660918 Air b'lemma:anaerobic' | ||
| 155 | +2.627297 O b'postag::' | ||
| 156 | +2.598463 Gtype b'lemma:type' | ||
| 157 | +2.598463 Gtype b'lemma[:2]:ty' | ||
| 158 | +2.432498 Substrain b'lemma[:2]:mg' | ||
| 159 | +2.400856 O b'postag:VBN' | ||
| 160 | +2.383489 Supp b'-1:lemma:with' | ||
| 161 | +2.343528 O b'lemma:b' | ||
| 162 | +2.312992 O b'lemma[:1]:h' | ||
| 163 | +2.296178 Supp b'lemma:acetate' | ||
| 164 | +2.250448 OD b'lemma[:1]:o' | ||
| 165 | +2.249155 O b'lemma:-' | ||
| 166 | +2.239976 Supp b'+2:lemma:iptg' | ||
| 167 | +2.231349 O b'lemma:a' | ||
| 168 | +2.225541 Air b'lemma[:2]:an' | ||
| 169 | +2.205886 O b'lemma[:1]:-' | ||
| 170 | +2.191486 Supp b'lemma:arginine' | ||
| 171 | +2.188955 Supp b'-1:lemma:Cra' | ||
| 172 | +2.152971 Technique b'lemma[:2]:rn' | ||
| 173 | +2.138683 O b'+2:lemma:\xc2\xb0c' | ||
| 174 | +2.118949 O b'lemma[:2]:ge' | ||
| 175 | +2.063110 Supp b'lemma:pq' | ||
| 176 | +2.063110 Supp b'lemma[:2]:pq' | ||
| 177 | +2.058471 Technique b'lemma[:2]:ch' | ||
| 178 | +2.053130 Supp b'+1:lemma:1' | ||
| 179 | +2.052724 Gtype b'-2:lemma:genotype/variation' | ||
| 180 | +2.032657 Gtype b'+1:lemma:type' | ||
| 181 | +2.018103 O b'-2:lemma:medium' | ||
| 182 | +2.013044 Phase b'-2:lemma:phase' | ||
| 183 | +1.969228 Anti b'+2:lemma:antibody' | ||
| 184 | +1.917771 Med b'+2:postag:CC' | ||
| 185 | +1.912680 O b'+1:lemma:pq' | ||
| 186 | +1.908997 pH b'+1:postag:CD' | ||
| 187 | +1.892742 O b'-2:lemma:myc' | ||
| 188 | +1.861128 Supp b'+1:lemma:\xc2\xb5m' | ||
| 189 | +1.848815 Substrain b'lemma[:1]:m' | ||
| 190 | +1.826357 O b'-1:lemma:tag' | ||
| 191 | +1.822886 Air b'lemma:Aerobic' | ||
| 192 | +1.822886 Air b'lemma[:2]:Ae' | ||
| 193 | +1.819467 Supp b'lemma:Iron' | ||
| 194 | +1.819467 Supp b'lemma[:2]:Ir' | ||
| 195 | +1.819467 Supp b'-2:lemma:Anaerobic' | ||
| 196 | +1.817872 O b'-1:lemma:anaerobic' | ||
| 197 | +1.815269 Air b'-1:lemma:ChIP-Seq' | ||
| 198 | +1.810754 Gtype b'lemma:\xe2\x88\x86' | ||
| 199 | +1.810754 Gtype b'lemma[:1]:\xe2\x88\x86' | ||
| 200 | +1.802850 Anti b'+1:lemma:antibody' | ||
| 201 | +1.793608 Gtype b'-2:lemma:delta' | ||
| 202 | +1.790256 Anti b'lemma[:2]:an' | ||
| 203 | +1.782356 O b'postag:DT' | ||
| 204 | +1.779445 O b'-1:lemma:glucose' | ||
| 205 | +1.758763 Gtype b'lemma:wt' | ||
| 206 | +1.758763 Gtype b'lemma[:2]:wt' | ||
| 207 | +1.738367 Gtype b'lemma[:2]:pk' | ||
| 208 | +1.734234 Supp b'lemma[:2]:ac' | ||
| 209 | +1.720838 Air b'lemma[:1]:a' | ||
| 210 | +1.712115 Gtype b'hGreek' | ||
| 211 | +1.699093 pH b'lemma[:2]:ph' | ||
| 212 | +1.692913 O b'+1:postag:RB' | ||
| 213 | +1.678980 Gtype b'lemma:nsrr' | ||
| 214 | +1.678980 Gtype b'lemma[:2]:ns' | ||
| 215 | +1.669471 Technique b'lemma[:1]:C' | ||
| 216 | +1.654089 Med b'lemma:MOPS' | ||
| 217 | +1.654089 Med b'lemma[:1]:M' | ||
| 218 | +1.654089 Med b'lemma[:2]:MO' | ||
| 219 | +1.627991 Air b'-2:lemma:IP' | ||
| 220 | +1.617309 Gtype b'lemma[:1]:w' | ||
| 221 | +1.595727 O b'lemma[:1]:b' | ||
| 222 | +1.590514 Gversion b'lemma:chip-seq' | ||
| 223 | +1.582529 O b'lemma:rpob' | ||
| 224 | +1.580157 Air b'postag:RB' | ||
| 225 | +1.561107 O b'lemma[:1]:c' | ||
| 226 | +1.551094 Supp b'lemma:no3' | ||
| 227 | +1.548068 O b'+2:lemma:cra' | ||
| 228 | +1.540664 O b'+2:postag:JJ' | ||
| 229 | +1.527844 Phase b'lemma[:2]:ex' | ||
| 230 | +1.519293 O b'-1:lemma:0.3' | ||
| 231 | +1.517005 Air b'-1:lemma:-' | ||
| 232 | +1.516109 Supp b'+1:lemma:2' | ||
| 233 | +1.511280 Supp b'lemma[:1]:I' | ||
| 234 | +1.508371 O b'-1:lemma:lb' | ||
| 235 | +1.496440 O b'lemma[:1]:r' | ||
| 236 | +1.490081 Supp b'+1:lemma:_' | ||
| 237 | +1.462019 Air b'-2:lemma:%' | ||
| 238 | +1.448517 O b'+1:postag:NNP' | ||
| 239 | +1.437005 Supp b'-2:lemma:agent' | ||
| 240 | +1.427410 Med b'+2:lemma:b2' | ||
| 241 | +1.427381 Supp b'-1:postag:CC' | ||
| 242 | +1.427067 Gtype b'+1:lemma:with' | ||
| 243 | +1.426523 Temp b'-1:lemma:\xcf\x8332' | ||
| 244 | +1.417716 Gtype b'+2:lemma:glucose' | ||
| 245 | +1.414055 Supp b'lemma[:2]:gl' | ||
| 246 | +1.403575 O b'lemma:0.4' | ||
| 247 | +1.399935 O b'lemma[:1]:s' | ||
| 248 | +1.398381 O b'+1:lemma:coli' | ||
| 249 | +1.396647 O b'-1:lemma:Aerobic' | ||
| 250 | +1.395651 O b'lemma[:1]:a' | ||
| 251 | +1.376438 Temp b'lemma[:1]:3' | ||
| 252 | +1.375520 Med b'lemma:broth' | ||
| 253 | +1.375520 Med b'-1:lemma:L' | ||
| 254 | +1.375520 Med b'lemma[:2]:br' | ||
| 255 | +1.370316 Temp b'lemma:43' | ||
| 256 | +1.370316 Temp b'lemma[:2]:43' | ||
| 257 | +1.364176 O b'-2:lemma:no3' | ||
| 258 | +1.359800 Med b'+1:lemma:0.4' | ||
| 259 | +1.358059 Gtype b'lemma[:1]:f' | ||
| 260 | +1.356613 Temp b'-2:lemma:\xcf\x8332' | ||
| 261 | +1.352851 Med b'lemma[:1]:m' | ||
| 262 | +1.350253 Temp b'-1:lemma:sample' | ||
| 263 | +1.345652 Supp b'-1:lemma:+' | ||
| 264 | +1.343022 O b'-1:lemma:ChIP-exo' | ||
| 265 | +1.341728 Temp b'+1:lemma:\xc2\xb0c' | ||
| 266 | +1.341676 Supp b'-2:lemma:for' | ||
| 267 | +1.334197 Med b'lemma:lb' | ||
| 268 | +1.334197 Med b'lemma[:2]:lb' | ||
| 269 | +1.323689 O b'+2:lemma:70' | ||
| 270 | +1.320454 O b'lemma[:1]:C' | ||
| 271 | +1.317446 Supp b'lemma:fructose' | ||
| 272 | +1.316176 Temp b'-1:lemma:43' | ||
| 273 | +1.310735 O b'+2:lemma:of' | ||
| 274 | +1.307493 Gtype b'-1:lemma:_' | ||
| 275 | +1.291050 Air b'lemma[:1]:A' | ||
| 276 | +1.270256 Gtype b'+1:lemma::' | ||
| 277 | +1.265788 Gtype b'lemma[:1]:W' | ||
| 278 | +1.263375 Supp b'lemma:rifampicin' | ||
| 279 | +1.260542 pH b'lemma:ph5' | ||
| 280 | +1.260542 pH b'+1:lemma:.5' | ||
| 281 | +1.256282 Supp b'lemma[:2]:ri' | ||
| 282 | +1.248005 Gtype b'-2:lemma:genotype' | ||
| 283 | +1.238880 Gtype b'lemma[:2]:ar' | ||
| 284 | +1.230717 Supp b'lemma[:1]:n' | ||
| 285 | +1.230211 Supp b'lemma[:2]:fr' | ||
| 286 | +1.227615 Gtype b'-2:postag:DT' | ||
| 287 | +1.223309 Phase b'-1:lemma:mid-log' | ||
| 288 | +1.214876 O b'lemma:A' | ||
| 289 | +1.212092 O b'-2:lemma:ChIP-Seq' | ||
| 290 | +1.211550 Technique b'symb' | ||
| 291 | +1.210489 Supp b'-1:postag:CD' | ||
| 292 | +1.207243 Supp b'+2:lemma:rifampicin' | ||
| 293 | +1.196436 Supp b'lemma:glucose' | ||
| 294 | +1.194146 Technique b'-2:lemma:wt' | ||
| 295 | +1.191991 Technique b'-1:lemma:input' | ||
| 296 | +1.184869 Air b'+1:postag:IN' | ||
| 297 | +1.180469 O b'lemma:chip' | ||
| 298 | +1.176262 Gtype b'lemma[:2]:fl' | ||
| 299 | +1.175702 Technique b'-1:lemma:_' | ||
| 300 | +1.174787 Supp b'-2:lemma:media' | ||
| 301 | +1.161899 Supp b'-2:lemma:induce' | ||
| 302 | +1.161883 Technique b'+2:lemma:ph5' | ||
| 303 | +1.160285 O b'+1:lemma:od600' | ||
| 304 | +1.157966 Gtype b'-1:lemma:rpob' | ||
| 305 | +1.157628 Supp b'-2:lemma:supplement' | ||
| 306 | +1.156345 Supp b'-1:lemma:_' | ||
| 307 | +1.152383 O b'postag:NNS' | ||
| 308 | +1.151993 Gtype b'lemma[:2]:de' | ||
| 309 | +1.151326 O b'-2:postag:FW' | ||
| 310 | +1.150033 Gversion b'lemma:nc' | ||
| 311 | +1.150033 Gversion b'lemma[:2]:nc' | ||
| 312 | +1.146428 O b'-1:postag:NNS' | ||
| 313 | +1.146219 Temp b'+2:postag:DT' | ||
| 314 | +1.145615 Phase b'lemma[:1]:e' | ||
| 315 | +1.141344 Technique b'-1:lemma:chip-exo' | ||
| 316 | +1.138300 O b'+2:lemma:fructose' | ||
| 317 | +1.135372 Strain b'+1:lemma:substr' | ||
| 318 | +1.135372 Strain b'-2:lemma:str' | ||
| 319 | +1.134450 Supp b'+1:lemma:mm' | ||
| 320 | +1.134095 Technique b'lemma:ChIP-exo' | ||
| 321 | +1.127452 O b'-1:lemma:\xc2\xb0c' | ||
| 322 | +1.123950 O b'lemma[:2]:ga' | ||
| 323 | +1.123563 O b'-1:lemma:aerobically' | ||
| 324 | +1.121892 Air b'-1:lemma:co2' | ||
| 325 | +1.121232 O b'lemma:Cra' | ||
| 326 | +1.119372 Gtype b'-1:postag:VBG' | ||
| 327 | +1.110682 Agit b'lemma:rpm' | ||
| 328 | +1.102814 O b'lemma:ml' | ||
| 329 | +1.102814 O b'lemma[:2]:ml' | ||
| 330 | +1.100677 Gtype b'-2:postag::' | ||
| 331 | +1.098179 Gversion b'lemma[:2]:00' | ||
| 332 | +1.098179 Gversion b'-2:lemma:nc' | ||
| 333 | +1.095659 O b'+1:postag:VBN' | ||
| 334 | +1.095182 Gtype b'+1:lemma:flagtag' | ||
| 335 | + | ||
| 336 | + | ||
| 337 | +Top negative: | ||
| 338 | +-0.181799 O b'-1:lemma:minimal' | ||
| 339 | +-0.182920 O b'lemma[:2]:an' | ||
| 340 | +-0.183892 O b'+1:postag:-LRB-' | ||
| 341 | +-0.185276 O b'-1:postag:-LRB-' | ||
| 342 | +-0.186866 O b'lemma:co2' | ||
| 343 | +-0.188027 Supp b'lemma[:1]:o' | ||
| 344 | +-0.190218 Supp b'-2:lemma:treat' | ||
| 345 | +-0.191930 O b'-1:lemma:g/l' | ||
| 346 | +-0.195921 O b'lemma[:1]:I' | ||
| 347 | +-0.197205 Supp b'lemma[:2]:an' | ||
| 348 | +-0.197254 Gtype b'lemma[:1]:-' | ||
| 349 | +-0.202475 Med b'-1:postag:CD' | ||
| 350 | +-0.204438 O b'+1:lemma:1/100' | ||
| 351 | +-0.204438 O b'-2:lemma:sodium' | ||
| 352 | +-0.204438 O b'+2:lemma:vol' | ||
| 353 | +-0.209335 Supp b'+2:lemma:glucose' | ||
| 354 | +-0.209547 Med b'+1:postag:NN' | ||
| 355 | +-0.209855 O b'-2:lemma:genome' | ||
| 356 | +-0.217016 O b'-1:lemma:the' | ||
| 357 | +-0.222607 O b'+1:lemma:_' | ||
| 358 | +-0.224716 pH b'postag:NN' | ||
| 359 | +-0.224816 O b'lemma[:2]:0.' | ||
| 360 | +-0.226096 Gtype b'-2:postag:IN' | ||
| 361 | +-0.230261 Air b'symb' | ||
| 362 | +-0.237585 O b'lemma[:1]:d' | ||
| 363 | +-0.238640 O b'lemma[:1]:k' | ||
| 364 | +-0.241721 O b'-1:lemma:ml' | ||
| 365 | +-0.242115 Technique b'-2:postag:NN' | ||
| 366 | +-0.243901 O b'lemma:methanol' | ||
| 367 | +-0.243901 O b'-2:lemma:dissolve' | ||
| 368 | +-0.244002 Supp b'-2:postag:-LRB-' | ||
| 369 | +-0.249340 O b'-1:lemma:1m' | ||
| 370 | +-0.249340 O b'+2:lemma:7.6' | ||
| 371 | +-0.249697 Supp b'-1:postag:-LRB-' | ||
| 372 | +-0.249998 O b'lemma:30' | ||
| 373 | +-0.253734 O b'-2:lemma:rpob' | ||
| 374 | +-0.255409 O b'-2:lemma:fresh' | ||
| 375 | +-0.256485 Supp b'lemma[:1]:a' | ||
| 376 | +-0.264086 Supp b'lemma:1' | ||
| 377 | +-0.271675 Gtype b'-1:lemma:-lrb-' | ||
| 378 | +-0.272687 Gtype b'-1:lemma:mg1655' | ||
| 379 | +-0.273508 Supp b'hGreek' | ||
| 380 | +-0.275591 Supp b'postag:CD' | ||
| 381 | +-0.277360 O b'lemma:wt' | ||
| 382 | +-0.277360 O b'lemma[:2]:wt' | ||
| 383 | +-0.279018 Gtype b'-2:postag:CD' | ||
| 384 | +-0.285813 Supp b'+2:lemma:-rrb-' | ||
| 385 | +-0.291830 Temp b'-2:postag:NN' | ||
| 386 | +-0.293279 O b'lemma:media' | ||
| 387 | +-0.299936 O b'-2:lemma:mm' | ||
| 388 | +-0.303152 Med b'-1:postag:NN' | ||
| 389 | +-0.305132 Gtype b'postag:VBG' | ||
| 390 | +-0.311471 O b'lemma:2h' | ||
| 391 | +-0.311471 O b'-1:lemma:additional' | ||
| 392 | +-0.311471 O b'lemma[:2]:2h' | ||
| 393 | +-0.315237 O b'lemma:anaerobic' | ||
| 394 | +-0.317197 O b'-2:lemma:IP' | ||
| 395 | +-0.321974 O b'-2:lemma:supplement' | ||
| 396 | +-0.323791 O b'-2:lemma:nh4cl' | ||
| 397 | +-0.325166 Temp b'hGreek' | ||
| 398 | +-0.325746 O b'-2:lemma:anaerobically' | ||
| 399 | +-0.331627 OD b'hUpper' | ||
| 400 | +-0.331627 OD b'hLower' | ||
| 401 | +-0.334399 Gtype b'lemma[:1]:g' | ||
| 402 | +-0.334670 Supp b'+1:postag:-RRB-' | ||
| 403 | +-0.335261 O b'-2:lemma:glucose' | ||
| 404 | +-0.340278 O b'postag:VBP' | ||
| 405 | +-0.347843 O b'lemma[:1]:L' | ||
| 406 | +-0.348884 Air b'+1:postag:JJ' | ||
| 407 | +-0.349719 O b'+1:lemma:1m' | ||
| 408 | +-0.349719 O b'-2:lemma:vol' | ||
| 409 | +-0.355444 Gtype b'+1:lemma:-rrb-' | ||
| 410 | +-0.362398 O b'+2:lemma:a' | ||
| 411 | +-0.363139 Supp b'+2:postag:NNP' | ||
| 412 | +-0.363539 O b'+2:lemma:at' | ||
| 413 | +-0.373919 O b'lemma:anaerobically' | ||
| 414 | +-0.379359 Supp b'-2:postag:NNS' | ||
| 415 | +-0.382724 O b'+1:lemma:.' | ||
| 416 | +-0.382724 O b'+1:postag:.' | ||
| 417 | +-0.388857 O b'-2:postag:-LRB-' | ||
| 418 | +-0.407105 Supp b'+2:postag:-RRB-' | ||
| 419 | +-0.412054 O b'+2:lemma:.' | ||
| 420 | +-0.412054 O b'+2:postag:.' | ||
| 421 | +-0.413334 Supp b'+1:lemma:-lrb-' | ||
| 422 | +-0.416341 O b'lemma[:1]:n' | ||
| 423 | +-0.418014 O b'lemma[:1]:0' | ||
| 424 | +-0.424605 Med b'+1:postag:IN' | ||
| 425 | +-0.427442 Supp b'+1:postag:-LRB-' | ||
| 426 | +-0.429806 O b'+1:lemma:supplement' | ||
| 427 | +-0.432187 O b'-2:lemma:until' | ||
| 428 | +-0.435863 Gtype b'lemma[:1]:h' | ||
| 429 | +-0.436389 Technique b'-1:postag::' | ||
| 430 | +-0.438245 O b'-1:lemma:cra' | ||
| 431 | +-0.439539 O b'-1:lemma:30' | ||
| 432 | +-0.440803 Supp b'symb' | ||
| 433 | +-0.443573 Med b'+2:postag:VBN' | ||
| 434 | +-0.444210 O b'-1:lemma:dissolve' | ||
| 435 | +-0.444210 O b'+1:lemma:methanol' | ||
| 436 | +-0.445532 O b'-1:lemma:mm' | ||
| 437 | +-0.446820 O b'-2:lemma:phase' | ||
| 438 | +-0.450190 O b'+2:lemma:-rrb-' | ||
| 439 | +-0.451058 Supp b'-1:postag:NNP' | ||
| 440 | +-0.451224 O b'-1:lemma:iptg' | ||
| 441 | +-0.453056 O b'-1:postag:IN' | ||
| 442 | +-0.465158 Gtype b'lemma[:1]:c' | ||
| 443 | +-0.465723 O b'+2:lemma:tag' | ||
| 444 | +-0.468785 O b'lemma[:2]:ar' | ||
| 445 | +-0.475738 Supp b'lemma[:1]:s' | ||
| 446 | +-0.478308 O b'lemma:glucose' | ||
| 447 | +-0.482478 O b'+2:lemma:10' | ||
| 448 | +-0.492471 O b'lemma[:2]:gl' | ||
| 449 | +-0.496458 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 450 | +-0.510030 O b'-2:lemma:dpd' | ||
| 451 | +-0.515565 O b'lemma:0.3' | ||
| 452 | +-0.520091 O b'+1:postag:VBG' | ||
| 453 | +-0.522258 O b'-2:lemma:pahse' | ||
| 454 | +-0.522746 O b'-2:postag:SYM' | ||
| 455 | +-0.537818 Supp b'-2:postag:JJ' | ||
| 456 | +-0.545668 Gtype b'lemma[:1]:r' | ||
| 457 | +-0.551002 Temp b'postag:NN' | ||
| 458 | +-0.558760 Agit b'symb' | ||
| 459 | +-0.559204 Phase b'postag:JJ' | ||
| 460 | +-0.565136 Supp b'+1:lemma:,' | ||
| 461 | +-0.565136 Supp b'+1:postag:,' | ||
| 462 | +-0.571466 O b'-2:lemma:2' | ||
| 463 | +-0.575665 O b'+1:lemma:until' | ||
| 464 | +-0.577302 O b'-1:lemma:vol' | ||
| 465 | +-0.577302 O b'-2:lemma:1/100' | ||
| 466 | +-0.577302 O b'+2:lemma:1m' | ||
| 467 | +-0.579486 Med b'symb' | ||
| 468 | +-0.581741 O b'lemma:mid-log' | ||
| 469 | +-0.584913 O b'+1:lemma:mm' | ||
| 470 | +-0.585128 O b'+1:lemma:g/l' | ||
| 471 | +-0.586101 Anti b'+1:lemma:anti-fur' | ||
| 472 | +-0.588450 Technique b'postag:NN' | ||
| 473 | +-0.588511 Phase b'-1:postag:JJ' | ||
| 474 | +-0.588605 O b'+2:lemma:fnr' | ||
| 475 | +-0.590129 O b'+2:lemma:+' | ||
| 476 | +-0.590818 O b'+1:lemma:+' | ||
| 477 | +-0.593171 O b'-1:lemma:IP' | ||
| 478 | +-0.595139 O b'+2:lemma:mid-log' | ||
| 479 | +-0.611364 O b'+1:postag:IN' | ||
| 480 | +-0.617324 Agit b'hUpper' | ||
| 481 | +-0.617324 Agit b'hLower' | ||
| 482 | +-0.622906 O b'+2:lemma:then' | ||
| 483 | +-0.626564 Gtype b'lemma[:1]:a' | ||
| 484 | +-0.627601 O b'-1:lemma:rpob' | ||
| 485 | +-0.628334 Supp b'+1:postag:NNS' | ||
| 486 | +-0.636204 O b'-2:postag:DT' | ||
| 487 | +-0.642751 Med b'-2:lemma:grow' | ||
| 488 | +-0.647649 O b'postag:RB' | ||
| 489 | +-0.649486 O b'-1:lemma:final' | ||
| 490 | +-0.651235 O b'+2:lemma:b' | ||
| 491 | +-0.655430 O b'-1:lemma:\xe2\x88\x86' | ||
| 492 | +-0.667559 Anti b'+2:lemma:polyclonal' | ||
| 493 | +-0.669485 O b'lemma:of' | ||
| 494 | +-0.669485 O b'lemma[:2]:of' | ||
| 495 | +-0.672853 O b'-2:lemma::' | ||
| 496 | +-0.676614 O b'-1:lemma:ph' | ||
| 497 | +-0.682840 O b'-1:lemma:nsrr' | ||
| 498 | +-0.686283 O b'+2:postag:-RRB-' | ||
| 499 | +-0.694618 Air b'-1:postag:JJ' | ||
| 500 | +-0.738949 Anti b'postag:NNP' | ||
| 501 | +-0.752290 O b'lemma[:2]:me' | ||
| 502 | +-0.771704 Phase b'hUpper' | ||
| 503 | +-0.771704 Phase b'hLower' | ||
| 504 | +-0.788474 OD b'+2:lemma:aerobically' | ||
| 505 | +-0.820144 Supp b'+2:lemma:fructose' | ||
| 506 | +-0.836881 O b'-2:lemma:0.3' | ||
| 507 | +-0.847160 Supp b'lemma[:1]:c' | ||
| 508 | +-0.858158 Med b'-2:postag:VBN' | ||
| 509 | +-0.861995 O b'-1:lemma:1' | ||
| 510 | +-0.862880 Gtype b'+2:lemma:cra' | ||
| 511 | +-0.873409 O b'+1:lemma:at' | ||
| 512 | +-0.891828 OD b'+1:postag:NN' | ||
| 513 | +-0.923198 Air b'postag:NN' | ||
| 514 | +-0.925308 Supp b'+2:lemma:1' | ||
| 515 | +-0.925325 O b'lemma[:2]:ri' | ||
| 516 | +-0.933014 O b'+1:lemma:2.0' | ||
| 517 | +-0.978288 O b'-2:lemma:media' | ||
| 518 | +-0.980313 O b'lemma:rifampicin' | ||
| 519 | +-1.014527 O b'-1:lemma:co2' | ||
| 520 | +-1.018731 O b'-2:postag:RB' | ||
| 521 | +-1.030401 Supp b'+2:lemma:2' | ||
| 522 | +-1.065251 Supp b'postag:JJ' | ||
| 523 | +-1.073645 O b'+2:lemma:rifampicin' | ||
| 524 | +-1.083180 O b'-1:lemma:sample' | ||
| 525 | +-1.101292 O b'lemma[:2]:ae' | ||
| 526 | +-1.117896 O b'-2:lemma:rifampicin' | ||
| 527 | +-1.140184 O b'-1:postag::' | ||
| 528 | +-1.170288 O b'lemma[:2]:30' | ||
| 529 | +-1.232648 Supp b'+2:postag:CD' | ||
| 530 | +-1.238805 O b'-1:lemma:2' | ||
| 531 | +-1.545952 O b'-1:postag:VBG' | ||
| 532 | +-1.640423 O b'+1:lemma:in' | ||
| 533 | +-1.646059 O b'+1:lemma:1' | ||
| 534 | +-1.993830 O b'lemma[:2]:fl' | ||
| 535 | +-2.235667 O b'+1:lemma:2' | ||
| 536 | +-3.056150 O b'-1:lemma::' | ||
| 537 | +-3.928545 O b'-1:lemma:_' | ||
| 538 | + |
CRF/reports/report_Run_7_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.19432865325703363, 'c2': 0.003040980714530674} | ||
| 5 | +best CV score:0.8693465985146905 | ||
| 6 | +model size: 0.10M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7784025356677224 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 1.000 0.818 0.900 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.943 0.971 53 | ||
| 15 | + Temp 0.923 0.828 0.873 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.895 0.906 0.901 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.600 0.806 0.688 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.782 0.792 0.778 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 6.494919 | ||
| 32 | +OD -> OD 6.471344 | ||
| 33 | +Agit -> Agit 6.119106 | ||
| 34 | +Med -> Med 5.417640 | ||
| 35 | +Anti -> Anti 5.342032 | ||
| 36 | +Supp -> Supp 5.069696 | ||
| 37 | +Air -> Air 5.063209 | ||
| 38 | +Gversion -> Gversion 4.772781 | ||
| 39 | +Technique -> Technique 4.679875 | ||
| 40 | +Gtype -> Gtype 4.566983 | ||
| 41 | +Phase -> Phase 4.367362 | ||
| 42 | +O -> O 4.012480 | ||
| 43 | +pH -> pH 3.171066 | ||
| 44 | +Substrain -> Gtype 2.054037 | ||
| 45 | +Gtype -> Supp 1.338135 | ||
| 46 | +O -> Technique 1.254842 | ||
| 47 | +O -> Gtype 0.899456 | ||
| 48 | +Technique -> Air 0.733598 | ||
| 49 | +O -> Supp 0.690130 | ||
| 50 | +Gtype -> Air 0.439886 | ||
| 51 | +Air -> O 0.399521 | ||
| 52 | +Med -> O 0.355588 | ||
| 53 | +Temp -> O 0.164789 | ||
| 54 | +O -> Phase 0.092964 | ||
| 55 | +O -> OD 0.041552 | ||
| 56 | +Supp -> O 0.021371 | ||
| 57 | +O -> Anti 0.011391 | ||
| 58 | +Supp -> Med -0.000215 | ||
| 59 | +Phase -> OD -0.080887 | ||
| 60 | +Technique -> Gtype -0.187130 | ||
| 61 | +Air -> Supp -0.201431 | ||
| 62 | +O -> Air -0.303507 | ||
| 63 | +Technique -> O -0.393310 | ||
| 64 | +Gtype -> O -0.823321 | ||
| 65 | +Substrain -> O -0.979191 | ||
| 66 | +Med -> Supp -2.040767 | ||
| 67 | + | ||
| 68 | + | ||
| 69 | +Top unlikely transitions: | ||
| 70 | +Temp -> Temp 6.494919 | ||
| 71 | +OD -> OD 6.471344 | ||
| 72 | +Agit -> Agit 6.119106 | ||
| 73 | +Med -> Med 5.417640 | ||
| 74 | +Anti -> Anti 5.342032 | ||
| 75 | +Supp -> Supp 5.069696 | ||
| 76 | +Air -> Air 5.063209 | ||
| 77 | +Gversion -> Gversion 4.772781 | ||
| 78 | +Technique -> Technique 4.679875 | ||
| 79 | +Gtype -> Gtype 4.566983 | ||
| 80 | +Phase -> Phase 4.367362 | ||
| 81 | +O -> O 4.012480 | ||
| 82 | +pH -> pH 3.171066 | ||
| 83 | +Substrain -> Gtype 2.054037 | ||
| 84 | +Gtype -> Supp 1.338135 | ||
| 85 | +O -> Technique 1.254842 | ||
| 86 | +O -> Gtype 0.899456 | ||
| 87 | +Technique -> Air 0.733598 | ||
| 88 | +O -> Supp 0.690130 | ||
| 89 | +Gtype -> Air 0.439886 | ||
| 90 | +Air -> O 0.399521 | ||
| 91 | +Med -> O 0.355588 | ||
| 92 | +Temp -> O 0.164789 | ||
| 93 | +O -> Phase 0.092964 | ||
| 94 | +O -> OD 0.041552 | ||
| 95 | +Supp -> O 0.021371 | ||
| 96 | +O -> Anti 0.011391 | ||
| 97 | +Supp -> Med -0.000215 | ||
| 98 | +Phase -> OD -0.080887 | ||
| 99 | +Technique -> Gtype -0.187130 | ||
| 100 | +Air -> Supp -0.201431 | ||
| 101 | +O -> Air -0.303507 | ||
| 102 | +Technique -> O -0.393310 | ||
| 103 | +Gtype -> O -0.823321 | ||
| 104 | +Substrain -> O -0.979191 | ||
| 105 | +Med -> Supp -2.040767 | ||
| 106 | + | ||
| 107 | + | ||
| 108 | +Top positive: | ||
| 109 | +8.498661 Air b'word:Aerobic' | ||
| 110 | +7.453902 O b'-1:lemma:ChIP-exo' | ||
| 111 | +6.772658 Anti b'-2:lemma:antibody' | ||
| 112 | +6.165081 Air b'lemma:anaerobic' | ||
| 113 | +6.117950 O b'-2:lemma:flagtag' | ||
| 114 | +5.590845 O b'-2:lemma:_' | ||
| 115 | +5.177165 Gtype b'lemma:wild-type' | ||
| 116 | +4.971807 O b'word:Cra' | ||
| 117 | +4.836191 Technique b'word:ChIP-Seq' | ||
| 118 | +4.497459 O b'+2:lemma:\xc2\xb0c' | ||
| 119 | +4.382845 Air b'word:Anaerobic' | ||
| 120 | +4.352125 Supp b'-1:word:Cra' | ||
| 121 | +4.336687 Technique b'lemma:rna-seq' | ||
| 122 | +4.283630 Technique b'lemma:ChIP-exo' | ||
| 123 | +4.269702 Supp b'lemma:nh4cl' | ||
| 124 | +4.218273 Gtype b'lemma:type' | ||
| 125 | +4.218273 Gtype b'word:type' | ||
| 126 | +3.961606 Phase b'-2:lemma:phase' | ||
| 127 | +3.949218 Gtype b'-2:lemma:affyexp' | ||
| 128 | +3.771576 O b'postag:IN' | ||
| 129 | +3.727619 Technique b'word:ChIPSeq' | ||
| 130 | +3.635085 Air b'postag:RB' | ||
| 131 | +3.622942 Gtype b'-2:lemma:genotype/variation' | ||
| 132 | +3.587121 O b'-2:lemma:medium' | ||
| 133 | +3.544455 O b'lemma:_' | ||
| 134 | +3.544455 O b'word:_' | ||
| 135 | +3.459688 Med b'lemma:MOPS' | ||
| 136 | +3.459688 Med b'word:MOPS' | ||
| 137 | +3.426079 Gtype b'-2:lemma:delta' | ||
| 138 | +3.413198 O b'lemma:2' | ||
| 139 | +3.413198 O b'word:2' | ||
| 140 | +3.403759 O b'lemma:3' | ||
| 141 | +3.403759 O b'word:3' | ||
| 142 | +3.349742 Technique b'word:ChIP-exo' | ||
| 143 | +3.309028 Gtype b'word:WT' | ||
| 144 | +3.276517 O b'lemma:1' | ||
| 145 | +3.276517 O b'word:1' | ||
| 146 | +3.197253 Supp b'lemma:arginine' | ||
| 147 | +3.055830 Supp b'lemma:pq' | ||
| 148 | +3.055830 Supp b'word:PQ' | ||
| 149 | +3.028461 O b'lemma:.' | ||
| 150 | +3.028461 O b'postag:.' | ||
| 151 | +3.028461 O b'word:.' | ||
| 152 | +3.006895 O b'postag:CC' | ||
| 153 | +3.001330 Anti b'+2:lemma:antibody' | ||
| 154 | +2.880709 Gtype b'-2:lemma:genotype' | ||
| 155 | +2.876573 Gversion b'-2:lemma:nc' | ||
| 156 | +2.875941 O b'lemma:-' | ||
| 157 | +2.875941 O b'word:-' | ||
| 158 | +2.850665 Phase b'lemma:mid-log' | ||
| 159 | +2.850665 Phase b'word:mid-log' | ||
| 160 | +2.801983 O b'-1:word:Aerobic' | ||
| 161 | +2.799528 Supp b'lemma:Iron' | ||
| 162 | +2.799528 Supp b'word:Iron' | ||
| 163 | +2.799528 Supp b'+1:word:Deficient' | ||
| 164 | +2.799528 Supp b'-2:lemma:Anaerobic' | ||
| 165 | +2.786563 Supp b'+2:lemma:iptg' | ||
| 166 | +2.718821 O b'+1:word:ChIP-Seq' | ||
| 167 | +2.713296 O b'lemma:chip' | ||
| 168 | +2.703351 Strain b'+1:lemma:substr' | ||
| 169 | +2.703351 Strain b'+1:word:substr' | ||
| 170 | +2.703351 Strain b'-2:lemma:str' | ||
| 171 | +2.679277 O b'postag:VBN' | ||
| 172 | +2.614364 O b'-2:lemma:~' | ||
| 173 | +2.597408 O b'lemma:rpob' | ||
| 174 | +2.597408 O b'word:RpoB' | ||
| 175 | +2.536698 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 176 | +2.536698 Gtype b'-1:word:\xe2\x88\x86' | ||
| 177 | +2.524686 Substrain b'-2:lemma:substr' | ||
| 178 | +2.524477 O b'lemma:b' | ||
| 179 | +2.524477 O b'word:B' | ||
| 180 | +2.516755 Gtype b'-2:postag:DT' | ||
| 181 | +2.488117 Gtype b'lemma:\xce\xb4cra' | ||
| 182 | +2.483993 Gtype b'lemma:wt' | ||
| 183 | +2.482868 Gtype b'word:\xce\x94cra' | ||
| 184 | +2.435143 O b'word:A' | ||
| 185 | +2.415059 O b'lemma:a' | ||
| 186 | +2.412868 O b'postag::' | ||
| 187 | +2.406725 Supp b'-2:lemma:media' | ||
| 188 | +2.390251 Gtype b'+1:lemma:type' | ||
| 189 | +2.390251 Gtype b'+1:word:type' | ||
| 190 | +2.339888 O b'+1:postag:RB' | ||
| 191 | +2.333432 Supp b'lemma:no3' | ||
| 192 | +2.333432 Supp b'word:NO3' | ||
| 193 | +2.317239 pH b'+1:postag:CD' | ||
| 194 | +2.276706 O b'+2:lemma:70' | ||
| 195 | +2.257460 Med b'+2:postag:CC' | ||
| 196 | +2.243390 O b'+2:postag:JJ' | ||
| 197 | +2.197419 Gtype b'lemma:\xe2\x88\x86' | ||
| 198 | +2.197419 Gtype b'word:\xe2\x88\x86' | ||
| 199 | +2.180922 Supp b'-1:postag:CC' | ||
| 200 | +2.172831 Gtype b'lemma:\xce\xb4fur' | ||
| 201 | +2.172831 Gtype b'word:\xce\x94fur' | ||
| 202 | +2.143238 Supp b'+1:lemma:\xc2\xb5m' | ||
| 203 | +2.143238 Supp b'+1:word:\xc2\xb5M' | ||
| 204 | +2.142465 Supp b'lemma:nacl' | ||
| 205 | +2.142465 Supp b'word:NaCl' | ||
| 206 | +2.120502 Supp b'-1:lemma:with' | ||
| 207 | +2.120502 Supp b'-1:word:with' | ||
| 208 | +2.074609 O b'+2:lemma:fructose' | ||
| 209 | +2.072246 Technique b'lemma:rnaseq' | ||
| 210 | +2.072246 Technique b'word:RNASeq' | ||
| 211 | +2.017366 O b'+2:lemma:cra' | ||
| 212 | +1.976126 O b'+1:postag:NNP' | ||
| 213 | +1.970655 Supp b'-2:lemma:condition' | ||
| 214 | +1.952514 Phase b'-2:lemma:until' | ||
| 215 | +1.949624 Supp b'lemma:nitrate' | ||
| 216 | +1.949624 Supp b'word:nitrate' | ||
| 217 | +1.946689 O b'-1:word:tag' | ||
| 218 | +1.943850 Substrain b'lemma:mg1655' | ||
| 219 | +1.943850 Substrain b'word:MG1655' | ||
| 220 | +1.927111 Gtype b'lemma:\xce\xb4soxr' | ||
| 221 | +1.927111 Gtype b'word:\xce\x94soxR' | ||
| 222 | +1.921168 O b'-1:lemma:media' | ||
| 223 | +1.921168 O b'-1:word:media' | ||
| 224 | +1.878986 Supp b'lemma:acetate' | ||
| 225 | +1.878986 Supp b'word:acetate' | ||
| 226 | +1.874636 Supp b'lemma:glucose' | ||
| 227 | +1.874636 Supp b'word:glucose' | ||
| 228 | +1.872148 O b'lemma:culture' | ||
| 229 | +1.839801 Gtype b'lemma:pk4854' | ||
| 230 | +1.839801 Gtype b'word:PK4854' | ||
| 231 | +1.832298 Gtype b'lemma:flag-tag' | ||
| 232 | +1.832298 Gtype b'-1:lemma:c-terminal' | ||
| 233 | +1.832298 Gtype b'word:Flag-tag' | ||
| 234 | +1.832298 Gtype b'-1:word:C-terminal' | ||
| 235 | +1.820296 O b'lemma:harbor' | ||
| 236 | +1.820296 O b'word:harboring' | ||
| 237 | +1.815309 O b'-1:lemma:tag' | ||
| 238 | +1.807546 O b'lemma:with' | ||
| 239 | +1.807546 O b'word:with' | ||
| 240 | +1.777512 Gversion b'lemma:chip-seq' | ||
| 241 | +1.769268 O b'isLower' | ||
| 242 | +1.765598 O b'-2:lemma:min' | ||
| 243 | +1.763690 Gversion b'-2:lemma:build' | ||
| 244 | +1.761248 Gtype b'+2:lemma:glucose' | ||
| 245 | +1.755584 O b'postag:VBD' | ||
| 246 | +1.743507 O b'lemma:Custom' | ||
| 247 | +1.743507 O b'word:Custom' | ||
| 248 | +1.740985 Med b'+2:lemma:b2' | ||
| 249 | +1.731020 Agit b'+2:lemma:at' | ||
| 250 | +1.725553 O b'+1:lemma:arca-8myc' | ||
| 251 | +1.725553 O b'+1:word:ArcA-8myc' | ||
| 252 | +1.720146 O b'lemma::' | ||
| 253 | +1.720146 O b'word::' | ||
| 254 | +1.712129 Gversion b'lemma:nc' | ||
| 255 | +1.712129 Gversion b'word:NC' | ||
| 256 | +1.707341 O b'-1:lemma:anaerobic' | ||
| 257 | +1.686115 O b'+1:lemma:pq' | ||
| 258 | +1.686115 O b'+1:word:PQ' | ||
| 259 | +1.678834 O b'lemma:ompr' | ||
| 260 | +1.678834 O b'word:OmpR' | ||
| 261 | +1.675572 Gtype b'-2:postag::' | ||
| 262 | +1.672750 Med b'lemma:lb' | ||
| 263 | +1.672750 Med b'word:LB' | ||
| 264 | +1.671736 Gtype b'+1:lemma:ph5' | ||
| 265 | +1.671736 Gtype b'+1:word:pH5' | ||
| 266 | +1.671736 Gtype b'+2:lemma:.5' | ||
| 267 | +1.670759 Air b'lemma:aerobically' | ||
| 268 | +1.670759 Air b'word:aerobically' | ||
| 269 | +1.647866 Temp b'-2:lemma:\xcf\x8332' | ||
| 270 | +1.640244 Supp b'lemma:rifampicin' | ||
| 271 | +1.640244 Supp b'word:rifampicin' | ||
| 272 | +1.626253 Gversion b'word:ChIP-Seq' | ||
| 273 | +1.618940 O b'-2:lemma:myc' | ||
| 274 | +1.612483 Temp b'+2:postag:DT' | ||
| 275 | +1.611153 Technique b'lemma:chipseq' | ||
| 276 | +1.599912 Supp b'-2:lemma:agent' | ||
| 277 | +1.592000 Temp b'isNumber' | ||
| 278 | +1.587160 Agit b'lemma:rpm' | ||
| 279 | +1.587160 Agit b'word:rpm' | ||
| 280 | +1.581472 O b'-2:lemma:with' | ||
| 281 | +1.569842 Temp b'-1:lemma:\xcf\x8332' | ||
| 282 | +1.569842 Temp b'-1:word:\xcf\x8332' | ||
| 283 | +1.563059 Gversion b'-2:postag:VB' | ||
| 284 | +1.527295 O b'postag:DT' | ||
| 285 | +1.515816 O b'-2:lemma:\xe2\x88\x86' | ||
| 286 | +1.507350 Vess b'lemma:flask' | ||
| 287 | +1.507350 Vess b'-1:lemma:warm' | ||
| 288 | +1.507350 Vess b'word:flask' | ||
| 289 | +1.507350 Vess b'-1:word:warmed' | ||
| 290 | +1.507350 Vess b'-2:lemma:pre' | ||
| 291 | +1.507350 Vess b'+2:lemma:43' | ||
| 292 | +1.506594 Gtype b'lemma:nsrr' | ||
| 293 | +1.506594 Gtype b'word:NsrR' | ||
| 294 | +1.504503 Gtype b'lemma:\xce\xb4ompr' | ||
| 295 | +1.504503 Gtype b'word:\xce\x94ompR' | ||
| 296 | +1.503447 O b'+2:lemma:polyclonal' | ||
| 297 | +1.495379 O b'-1:lemma:lb' | ||
| 298 | +1.495379 O b'-1:word:LB' | ||
| 299 | +1.491679 Gtype b'-1:postag:VBG' | ||
| 300 | +1.487841 Med b'isUpper' | ||
| 301 | +1.483957 Gtype b'lemma:dfnr' | ||
| 302 | +1.483957 Gtype b'word:dFNR' | ||
| 303 | +1.474477 Technique b'+2:lemma:ph5' | ||
| 304 | +1.473390 Gversion b'+2:lemma:000913' | ||
| 305 | +1.470703 O b'+1:lemma:mid-log' | ||
| 306 | +1.470703 O b'+1:word:mid-log' | ||
| 307 | +1.470599 Med b'+2:lemma:+' | ||
| 308 | +1.469928 Supp b'-2:lemma:for' | ||
| 309 | + | ||
| 310 | + | ||
| 311 | +Top negative: | ||
| 312 | +-0.126187 Supp b'-2:lemma:.' | ||
| 313 | +-0.126187 Supp b'-2:postag:.' | ||
| 314 | +-0.127621 Med b'+1:postag:IN' | ||
| 315 | +-0.130732 O b'-2:lemma:dpd' | ||
| 316 | +-0.132134 Technique b'postag:NN' | ||
| 317 | +-0.132995 Air b'-2:postag:RB' | ||
| 318 | +-0.133944 O b'-2:lemma:mm' | ||
| 319 | +-0.135455 O b'-2:lemma:pahse' | ||
| 320 | +-0.136661 O b'lemma:37' | ||
| 321 | +-0.136661 O b'word:37' | ||
| 322 | +-0.140067 OD b'+2:postag:NN' | ||
| 323 | +-0.140101 Supp b'+2:lemma:.' | ||
| 324 | +-0.140101 Supp b'+2:postag:.' | ||
| 325 | +-0.140302 O b'-2:lemma:-lrb-' | ||
| 326 | +-0.141434 Supp b'-1:postag:-LRB-' | ||
| 327 | +-0.141915 Air b'+1:postag:JJ' | ||
| 328 | +-0.144090 O b'-1:lemma:fresh' | ||
| 329 | +-0.144090 O b'-1:word:fresh' | ||
| 330 | +-0.153079 Supp b'+2:postag:NNP' | ||
| 331 | +-0.166309 Supp b'+1:postag:VBN' | ||
| 332 | +-0.166863 O b'+1:postag:-LRB-' | ||
| 333 | +-0.175325 Phase b'-2:postag:NN' | ||
| 334 | +-0.178557 O b'+1:lemma:mm' | ||
| 335 | +-0.178557 O b'+1:word:mM' | ||
| 336 | +-0.179047 Supp b'lemma:10' | ||
| 337 | +-0.179047 Supp b'word:10' | ||
| 338 | +-0.181748 O b'-2:lemma:minimal' | ||
| 339 | +-0.181863 O b'-1:word:the' | ||
| 340 | +-0.183178 O b'-1:lemma:of' | ||
| 341 | +-0.183178 O b'-1:word:of' | ||
| 342 | +-0.189370 Air b'+2:postag:CC' | ||
| 343 | +-0.193112 O b'lemma:wt' | ||
| 344 | +-0.194128 O b'-1:lemma:the' | ||
| 345 | +-0.194149 O b'-1:lemma:at' | ||
| 346 | +-0.202859 Temp b'isLower' | ||
| 347 | +-0.206499 O b'+2:postag:RB' | ||
| 348 | +-0.211728 O b'-2:lemma:media' | ||
| 349 | +-0.217752 Supp b'-2:lemma:treat' | ||
| 350 | +-0.226935 Med b'+1:postag:NN' | ||
| 351 | +-0.228587 Phase b'+1:postag:NN' | ||
| 352 | +-0.230504 O b'-1:postag:DT' | ||
| 353 | +-0.231712 Temp b'-2:postag:NN' | ||
| 354 | +-0.235534 Air b'-2:postag:CC' | ||
| 355 | +-0.237756 Air b'-2:postag:-LRB-' | ||
| 356 | +-0.239368 O b'-2:postag:-LRB-' | ||
| 357 | +-0.243864 O b'+1:lemma:g/l' | ||
| 358 | +-0.243864 O b'+1:word:g/L' | ||
| 359 | +-0.244939 O b'lemma:aerobically' | ||
| 360 | +-0.244939 O b'word:aerobically' | ||
| 361 | +-0.253096 O b'-2:lemma:fresh' | ||
| 362 | +-0.263628 O b'-1:postag:IN' | ||
| 363 | +-0.268765 Supp b'+1:lemma:-lrb-' | ||
| 364 | +-0.268765 Supp b'+1:word:-LRB-' | ||
| 365 | +-0.269581 OD b'isUpper' | ||
| 366 | +-0.271938 O b'+1:lemma:supplement' | ||
| 367 | +-0.271938 O b'+1:word:supplemented' | ||
| 368 | +-0.279427 Anti b'+2:postag:JJ' | ||
| 369 | +-0.282509 Air b'-2:lemma:-lrb-' | ||
| 370 | +-0.282587 Supp b'+1:lemma:,' | ||
| 371 | +-0.282587 Supp b'+1:postag:,' | ||
| 372 | +-0.282587 Supp b'+1:word:,' | ||
| 373 | +-0.290826 Supp b'+1:postag:-LRB-' | ||
| 374 | +-0.298496 O b'-2:lemma:supplement' | ||
| 375 | +-0.301952 O b'-2:lemma:at' | ||
| 376 | +-0.302829 O b'+2:lemma:add' | ||
| 377 | +-0.310606 O b'+1:lemma:.' | ||
| 378 | +-0.310606 O b'+1:postag:.' | ||
| 379 | +-0.310606 O b'+1:word:.' | ||
| 380 | +-0.313003 O b'-1:lemma:co2' | ||
| 381 | +-0.313003 O b'-1:word:CO2' | ||
| 382 | +-0.317690 O b'-1:lemma:dissolve' | ||
| 383 | +-0.317690 O b'+1:lemma:methanol' | ||
| 384 | +-0.317690 O b'-1:word:dissolved' | ||
| 385 | +-0.317690 O b'+1:word:methanol' | ||
| 386 | +-0.326174 O b'-1:lemma:minimal' | ||
| 387 | +-0.326174 O b'-1:word:minimal' | ||
| 388 | +-0.326216 O b'-1:lemma:IP' | ||
| 389 | +-0.326216 O b'-1:word:IP' | ||
| 390 | +-0.326756 Med b'-1:postag:NN' | ||
| 391 | +-0.330968 O b'-1:lemma:2' | ||
| 392 | +-0.330968 O b'-1:word:2' | ||
| 393 | +-0.331123 Supp b'isNumber' | ||
| 394 | +-0.331144 O b'+2:lemma:fnr' | ||
| 395 | +-0.342326 Med b'+2:postag:VBN' | ||
| 396 | +-0.348597 O b'-2:lemma:glucose' | ||
| 397 | +-0.349154 O b'-2:lemma:until' | ||
| 398 | +-0.353909 O b'+1:lemma:1m' | ||
| 399 | +-0.353909 O b'+1:word:1M' | ||
| 400 | +-0.353909 O b'-2:lemma:vol' | ||
| 401 | +-0.354844 O b'lemma:media' | ||
| 402 | +-0.354844 O b'word:media' | ||
| 403 | +-0.364311 O b'+2:lemma:a' | ||
| 404 | +-0.368051 O b'lemma:nitrate' | ||
| 405 | +-0.368051 O b'word:nitrate' | ||
| 406 | +-0.369958 Air b'-2:lemma:and' | ||
| 407 | +-0.370055 O b'-2:lemma:aerobically' | ||
| 408 | +-0.371442 O b'-1:lemma:mm' | ||
| 409 | +-0.371442 O b'-1:word:mM' | ||
| 410 | +-0.377685 O b'+2:lemma:10' | ||
| 411 | +-0.378127 Supp b'postag:CC' | ||
| 412 | +-0.381117 O b'+2:lemma:at' | ||
| 413 | +-0.389688 pH b'isLower' | ||
| 414 | +-0.391439 O b'+2:lemma:-rrb-' | ||
| 415 | +-0.401482 O b'-2:lemma:anaerobically' | ||
| 416 | +-0.403860 Air b'-1:postag:RB' | ||
| 417 | +-0.405233 O b'lemma:2h' | ||
| 418 | +-0.405233 O b'-1:lemma:additional' | ||
| 419 | +-0.405233 O b'word:2h' | ||
| 420 | +-0.405233 O b'-1:word:additional' | ||
| 421 | +-0.407301 O b'-1:lemma:grow' | ||
| 422 | +-0.410353 O b'lemma:minimal' | ||
| 423 | +-0.410353 O b'word:minimal' | ||
| 424 | +-0.415960 O b'lemma:anaerobically' | ||
| 425 | +-0.415960 O b'word:anaerobically' | ||
| 426 | +-0.431864 O b'+2:lemma:rifampicin' | ||
| 427 | +-0.435994 Gtype b'+2:lemma:cra' | ||
| 428 | +-0.448208 O b'+2:lemma:.' | ||
| 429 | +-0.448208 O b'+2:postag:.' | ||
| 430 | +-0.457862 O b'-1:lemma:ph' | ||
| 431 | +-0.457862 O b'-1:word:pH' | ||
| 432 | +-0.462522 O b'lemma:mid-log' | ||
| 433 | +-0.462522 O b'word:mid-log' | ||
| 434 | +-0.464717 O b'-1:postag::' | ||
| 435 | +-0.478899 Gtype b'postag:VBG' | ||
| 436 | +-0.480305 O b'+2:postag:-RRB-' | ||
| 437 | +-0.486380 Supp b'-1:postag:NNP' | ||
| 438 | +-0.487200 pH b'postag:NN' | ||
| 439 | +-0.487808 O b'+2:lemma:+' | ||
| 440 | +-0.495639 Air b'-1:postag:JJ' | ||
| 441 | +-0.498421 Phase b'isUpper' | ||
| 442 | +-0.501538 O b'+1:lemma:until' | ||
| 443 | +-0.501538 O b'+1:word:until' | ||
| 444 | +-0.508531 O b'-1:lemma:nsrr' | ||
| 445 | +-0.508531 O b'-1:word:NsrR' | ||
| 446 | +-0.515487 O b'-2:lemma:phase' | ||
| 447 | +-0.515810 O b'-1:lemma:30' | ||
| 448 | +-0.515810 O b'-1:word:30' | ||
| 449 | +-0.523969 Med b'-2:postag:VBN' | ||
| 450 | +-0.536049 Technique b'isNumber' | ||
| 451 | +-0.539654 O b'lemma:of' | ||
| 452 | +-0.539654 O b'word:of' | ||
| 453 | +-0.555532 Supp b'-2:postag:JJ' | ||
| 454 | +-0.605271 O b'postag:VBP' | ||
| 455 | +-0.607462 O b'-1:lemma:1' | ||
| 456 | +-0.607462 O b'-1:word:1' | ||
| 457 | +-0.610401 O b'lemma:0.3' | ||
| 458 | +-0.610401 O b'word:0.3' | ||
| 459 | +-0.654660 O b'+1:lemma:in' | ||
| 460 | +-0.654660 O b'+1:word:in' | ||
| 461 | +-0.674407 Anti b'isUpper' | ||
| 462 | +-0.680937 Air b'postag:NN' | ||
| 463 | +-0.683120 O b'+1:postag:IN' | ||
| 464 | +-0.694831 O b'-2:lemma::' | ||
| 465 | +-0.711579 O b'+2:lemma:mid-log' | ||
| 466 | +-0.717061 O b'postag:RB' | ||
| 467 | +-0.727172 O b'+1:lemma:2.0' | ||
| 468 | +-0.727172 O b'+1:word:2.0' | ||
| 469 | +-0.727991 O b'+1:lemma:at' | ||
| 470 | +-0.727991 O b'+1:word:at' | ||
| 471 | +-0.750617 Gtype b'isNumber' | ||
| 472 | +-0.754171 O b'-1:lemma:vol' | ||
| 473 | +-0.754171 O b'-1:word:vol' | ||
| 474 | +-0.754171 O b'-2:lemma:1/100' | ||
| 475 | +-0.754171 O b'+2:lemma:1m' | ||
| 476 | +-0.769142 Gversion b'isLower' | ||
| 477 | +-0.799722 O b'lemma:rifampicin' | ||
| 478 | +-0.799722 O b'word:rifampicin' | ||
| 479 | +-0.813037 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 480 | +-0.818783 O b'lemma:30' | ||
| 481 | +-0.818783 O b'word:30' | ||
| 482 | +-0.832669 Technique b'isLower' | ||
| 483 | +-0.884252 O b'+1:postag:VBG' | ||
| 484 | +-0.887424 O b'-2:postag:DT' | ||
| 485 | +-0.937669 O b'-2:lemma:0.3' | ||
| 486 | +-0.940717 Supp b'+2:lemma:fructose' | ||
| 487 | +-0.972116 Supp b'+2:postag:CD' | ||
| 488 | +-0.978709 Gtype b'isLower' | ||
| 489 | +-1.016999 O b'-2:lemma:rifampicin' | ||
| 490 | +-1.111059 Agit b'isUpper' | ||
| 491 | +-1.130478 O b'-2:postag:RB' | ||
| 492 | +-1.171981 O b'+2:lemma:then' | ||
| 493 | +-1.242037 Phase b'postag:JJ' | ||
| 494 | +-1.330863 O b'+1:lemma:1' | ||
| 495 | +-1.330863 O b'+1:word:1' | ||
| 496 | +-1.365191 Temp b'postag:NN' | ||
| 497 | +-1.474036 Supp b'postag:JJ' | ||
| 498 | +-1.619405 Phase b'-1:postag:JJ' | ||
| 499 | +-1.653492 Supp b'+2:lemma:1' | ||
| 500 | +-1.660082 O b'+1:lemma:2' | ||
| 501 | +-1.660082 O b'+1:word:2' | ||
| 502 | +-1.959474 O b'-1:postag:VBG' | ||
| 503 | +-2.021801 Supp b'+2:lemma:2' | ||
| 504 | +-2.109223 Med b'-2:lemma:grow' | ||
| 505 | +-2.312172 OD b'+1:postag:NN' | ||
| 506 | +-2.414666 O b'-1:lemma::' | ||
| 507 | +-2.414666 O b'-1:word::' | ||
| 508 | +-2.754541 O b'-1:lemma:_' | ||
| 509 | +-2.754541 O b'-1:word:_' | ||
| 510 | +-3.657725 OD b'+2:lemma:aerobically' | ||
| 511 | +-4.070887 Anti b'postag:NNP' | ||
| 512 | + |
CRF/reports/report_Run_7_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.03780171336875179, 'c2': 0.012718090480016972} | ||
| 5 | +best CV score:0.8741870589668248 | ||
| 6 | +model size: 0.16M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.764435455440298 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.818 0.818 0.818 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 0.955 0.913 0.933 23 | ||
| 14 | + Med 1.000 0.925 0.961 53 | ||
| 15 | + Temp 1.000 0.759 0.863 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.869 0.859 0.864 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.593 0.806 0.684 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.769 0.778 0.764 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Temp -> Temp 5.633437 | ||
| 32 | +Agit -> Agit 5.242920 | ||
| 33 | +Med -> Med 5.205888 | ||
| 34 | +OD -> OD 4.820634 | ||
| 35 | +Supp -> Supp 4.795672 | ||
| 36 | +Anti -> Anti 4.563286 | ||
| 37 | +Gversion -> Gversion 4.480777 | ||
| 38 | +Gtype -> Gtype 4.410238 | ||
| 39 | +O -> O 4.309533 | ||
| 40 | +Phase -> Phase 4.099270 | ||
| 41 | +Air -> Air 3.591014 | ||
| 42 | +Technique -> Technique 3.585887 | ||
| 43 | +pH -> pH 2.997587 | ||
| 44 | +Substrain -> Gtype 1.829751 | ||
| 45 | +O -> Technique 0.949969 | ||
| 46 | +Gtype -> Supp 0.738864 | ||
| 47 | +O -> Gtype 0.585802 | ||
| 48 | +Gtype -> Air 0.391269 | ||
| 49 | +Gtype -> pH 0.344184 | ||
| 50 | +Technique -> Air 0.264778 | ||
| 51 | +O -> Supp 0.191022 | ||
| 52 | +Air -> O 0.116016 | ||
| 53 | +Temp -> O 0.097547 | ||
| 54 | +Med -> O 0.057304 | ||
| 55 | +O -> Anti 0.017577 | ||
| 56 | +pH -> Supp -0.028693 | ||
| 57 | +O -> Phase -0.048549 | ||
| 58 | +Technique -> OD -0.055283 | ||
| 59 | +Anti -> Med -0.056104 | ||
| 60 | +Supp -> O -0.109106 | ||
| 61 | +Air -> Temp -0.113829 | ||
| 62 | +OD -> Supp -0.116904 | ||
| 63 | +Gversion -> Supp -0.118460 | ||
| 64 | +Technique -> Supp -0.137571 | ||
| 65 | +Air -> OD -0.151166 | ||
| 66 | +Agit -> O -0.182410 | ||
| 67 | +Air -> Gtype -0.230985 | ||
| 68 | +Supp -> Gtype -0.235813 | ||
| 69 | +Med -> Air -0.245332 | ||
| 70 | +Phase -> O -0.254973 | ||
| 71 | +Supp -> Phase -0.254988 | ||
| 72 | +Phase -> Air -0.262541 | ||
| 73 | +OD -> O -0.278938 | ||
| 74 | +Anti -> O -0.285405 | ||
| 75 | +Air -> Phase -0.291613 | ||
| 76 | +Gtype -> Technique -0.321912 | ||
| 77 | +Anti -> Supp -0.329510 | ||
| 78 | +O -> OD -0.360061 | ||
| 79 | +Gtype -> Anti -0.380808 | ||
| 80 | +Gtype -> Med -0.399195 | ||
| 81 | + | ||
| 82 | + | ||
| 83 | +Top unlikely transitions: | ||
| 84 | +Gtype -> pH 0.344184 | ||
| 85 | +Technique -> Air 0.264778 | ||
| 86 | +O -> Supp 0.191022 | ||
| 87 | +Air -> O 0.116016 | ||
| 88 | +Temp -> O 0.097547 | ||
| 89 | +Med -> O 0.057304 | ||
| 90 | +O -> Anti 0.017577 | ||
| 91 | +pH -> Supp -0.028693 | ||
| 92 | +O -> Phase -0.048549 | ||
| 93 | +Technique -> OD -0.055283 | ||
| 94 | +Anti -> Med -0.056104 | ||
| 95 | +Supp -> O -0.109106 | ||
| 96 | +Air -> Temp -0.113829 | ||
| 97 | +OD -> Supp -0.116904 | ||
| 98 | +Gversion -> Supp -0.118460 | ||
| 99 | +Technique -> Supp -0.137571 | ||
| 100 | +Air -> OD -0.151166 | ||
| 101 | +Agit -> O -0.182410 | ||
| 102 | +Air -> Gtype -0.230985 | ||
| 103 | +Supp -> Gtype -0.235813 | ||
| 104 | +Med -> Air -0.245332 | ||
| 105 | +Phase -> O -0.254973 | ||
| 106 | +Supp -> Phase -0.254988 | ||
| 107 | +Phase -> Air -0.262541 | ||
| 108 | +OD -> O -0.278938 | ||
| 109 | +Anti -> O -0.285405 | ||
| 110 | +Air -> Phase -0.291613 | ||
| 111 | +Gtype -> Technique -0.321912 | ||
| 112 | +Anti -> Supp -0.329510 | ||
| 113 | +O -> OD -0.360061 | ||
| 114 | +Gtype -> Anti -0.380808 | ||
| 115 | +Gtype -> Med -0.399195 | ||
| 116 | +Supp -> Air -0.399750 | ||
| 117 | +O -> Med -0.419285 | ||
| 118 | +Phase -> OD -0.436501 | ||
| 119 | +Air -> Agit -0.455472 | ||
| 120 | +Technique -> O -0.530788 | ||
| 121 | +Temp -> Med -0.544192 | ||
| 122 | +Technique -> pH -0.577493 | ||
| 123 | +Supp -> Med -0.646950 | ||
| 124 | +OD -> Air -0.730559 | ||
| 125 | +Phase -> Supp -0.748627 | ||
| 126 | +Air -> Med -0.810512 | ||
| 127 | +Gtype -> O -0.913442 | ||
| 128 | +Air -> Supp -0.986614 | ||
| 129 | +Agit -> Air -1.033744 | ||
| 130 | +O -> Air -1.071275 | ||
| 131 | +Substrain -> O -1.325541 | ||
| 132 | +Technique -> Gtype -1.554985 | ||
| 133 | +Med -> Supp -2.340793 | ||
| 134 | + | ||
| 135 | + | ||
| 136 | +Top positive: | ||
| 137 | +5.181623 Air b'word:Aerobic' | ||
| 138 | +5.069692 O b'-2:lemma:_' | ||
| 139 | +4.702830 Anti b'-2:lemma:antibody' | ||
| 140 | +4.290692 Air b'lemma:anaerobic' | ||
| 141 | +4.139968 Gtype b'-2:lemma:genotype/variation' | ||
| 142 | +4.052057 O b'word:Cra' | ||
| 143 | +3.610352 Technique b'word:ChIP-Seq' | ||
| 144 | +3.589676 O b'lemma:_' | ||
| 145 | +3.589676 O b'word:_' | ||
| 146 | +3.543264 O b'lemma:1' | ||
| 147 | +3.543264 O b'word:1' | ||
| 148 | +3.538307 O b'lemma:2' | ||
| 149 | +3.538307 O b'word:2' | ||
| 150 | +3.447474 Gtype b'-2:lemma:genotype' | ||
| 151 | +3.421203 Air b'postag:RB' | ||
| 152 | +3.390076 Phase b'-2:lemma:phase' | ||
| 153 | +3.349265 Supp b'lemma:pq' | ||
| 154 | +3.349265 Supp b'word:PQ' | ||
| 155 | +3.332208 O b'-2:lemma:medium' | ||
| 156 | +3.230628 O b'-1:lemma:ChIP-exo' | ||
| 157 | +3.167256 Technique b'lemma:rna-seq' | ||
| 158 | +3.159409 O b'-2:lemma:flagtag' | ||
| 159 | +3.114586 Technique b'word:ChIP-exo' | ||
| 160 | +3.101194 Technique b'lemma:ChIP-exo' | ||
| 161 | +2.986312 Supp b'lemma:nh4cl' | ||
| 162 | +2.980962 Technique b'word:ChIPSeq' | ||
| 163 | +2.961365 Gtype b'lemma:type' | ||
| 164 | +2.961365 Gtype b'word:type' | ||
| 165 | +2.960004 Air b'word:Anaerobic' | ||
| 166 | +2.947966 Gtype b'word:WT' | ||
| 167 | +2.932783 O b'+2:lemma:\xc2\xb0c' | ||
| 168 | +2.920653 Supp b'+2:lemma:iptg' | ||
| 169 | +2.872474 O b'lemma:.' | ||
| 170 | +2.872474 O b'postag:.' | ||
| 171 | +2.872474 O b'word:.' | ||
| 172 | +2.867743 Gtype b'lemma:wild-type' | ||
| 173 | +2.834804 Supp b'-1:word:Cra' | ||
| 174 | +2.831538 O b'lemma:-' | ||
| 175 | +2.831538 O b'word:-' | ||
| 176 | +2.798161 O b'lemma:3' | ||
| 177 | +2.798161 O b'word:3' | ||
| 178 | +2.798112 Gtype b'-2:lemma:affyexp' | ||
| 179 | +2.692314 O b'lemma:rpob' | ||
| 180 | +2.692314 O b'word:RpoB' | ||
| 181 | +2.675098 O b'postag::' | ||
| 182 | +2.664980 Gtype b'lemma:wt' | ||
| 183 | +2.604579 Gtype b'lemma:\xce\xb4cra' | ||
| 184 | +2.592394 O b'postag:VBN' | ||
| 185 | +2.550258 Supp b'lemma:no3' | ||
| 186 | +2.550258 Supp b'word:NO3' | ||
| 187 | +2.533320 Gtype b'word:\xce\x94cra' | ||
| 188 | +2.500008 Technique b'lemma:chipseq' | ||
| 189 | +2.463493 Med b'lemma:MOPS' | ||
| 190 | +2.463493 Med b'word:MOPS' | ||
| 191 | +2.459381 O b'+2:lemma:70' | ||
| 192 | +2.452341 Supp b'lemma:Iron' | ||
| 193 | +2.452341 Supp b'word:Iron' | ||
| 194 | +2.452341 Supp b'+1:word:Deficient' | ||
| 195 | +2.452341 Supp b'-2:lemma:Anaerobic' | ||
| 196 | +2.449771 Med b'+2:postag:CC' | ||
| 197 | +2.435165 Phase b'+2:lemma:o.d.' | ||
| 198 | +2.430391 O b'-1:lemma:tag' | ||
| 199 | +2.425850 Phase b'lemma:mid-log' | ||
| 200 | +2.425850 Phase b'word:mid-log' | ||
| 201 | +2.407993 O b'postag:IN' | ||
| 202 | +2.398217 Phase b'lemma:exponential' | ||
| 203 | +2.398217 Phase b'word:exponential' | ||
| 204 | +2.398217 Phase b'lemma:stationary' | ||
| 205 | +2.398217 Phase b'word:stationary' | ||
| 206 | +2.392837 Supp b'lemma:acetate' | ||
| 207 | +2.392837 Supp b'word:acetate' | ||
| 208 | +2.385444 Gtype b'+1:lemma:type' | ||
| 209 | +2.385444 Gtype b'+1:word:type' | ||
| 210 | +2.380980 Anti b'+2:lemma:antibody' | ||
| 211 | +2.369810 Supp b'-2:lemma:agent' | ||
| 212 | +2.356829 O b'word:A' | ||
| 213 | +2.351468 Med b'+2:lemma:b2' | ||
| 214 | +2.300790 Supp b'lemma:arginine' | ||
| 215 | +2.298306 Supp b'lemma:nacl' | ||
| 216 | +2.298306 Supp b'word:NaCl' | ||
| 217 | +2.295477 O b'+1:postag:NNP' | ||
| 218 | +2.243176 O b'-1:word:Aerobic' | ||
| 219 | +2.239344 Air b'lemma:Aerobic' | ||
| 220 | +2.178927 O b'lemma:b' | ||
| 221 | +2.178927 O b'word:B' | ||
| 222 | +2.167680 Gtype b'lemma:\xe2\x88\x86' | ||
| 223 | +2.167680 Gtype b'word:\xe2\x88\x86' | ||
| 224 | +2.163673 Supp b'lemma:glucose' | ||
| 225 | +2.163673 Supp b'word:glucose' | ||
| 226 | +2.149402 Technique b'+2:lemma:ph5' | ||
| 227 | +2.131320 O b'lemma:with' | ||
| 228 | +2.131320 O b'word:with' | ||
| 229 | +2.107004 Substrain b'lemma:mg1655' | ||
| 230 | +2.107004 Substrain b'word:MG1655' | ||
| 231 | +2.093423 O b'+2:lemma:fructose' | ||
| 232 | +2.092930 Supp b'-1:lemma:with' | ||
| 233 | +2.092930 Supp b'-1:word:with' | ||
| 234 | +2.072607 Supp b'-1:lemma:Cra' | ||
| 235 | +2.061502 O b'+1:word:ChIP-Seq' | ||
| 236 | +2.048739 O b'lemma:ompr' | ||
| 237 | +2.048739 O b'word:OmpR' | ||
| 238 | +2.041804 O b'lemma:culture' | ||
| 239 | +2.035926 Gtype b'-2:postag:DT' | ||
| 240 | +2.033981 Substrain b'-2:lemma:substr' | ||
| 241 | +2.015820 Gtype b'lemma:\xce\xb4soxr' | ||
| 242 | +2.015820 Gtype b'word:\xce\x94soxR' | ||
| 243 | +2.002657 Gtype b'lemma:flag-tag' | ||
| 244 | +2.002657 Gtype b'-1:lemma:c-terminal' | ||
| 245 | +2.002657 Gtype b'word:Flag-tag' | ||
| 246 | +2.002657 Gtype b'-1:word:C-terminal' | ||
| 247 | +1.981109 Supp b'+1:lemma:\xc2\xb5m' | ||
| 248 | +1.981109 Supp b'+1:word:\xc2\xb5M' | ||
| 249 | +1.977275 O b'+2:lemma:cra' | ||
| 250 | +1.976163 Strain b'+1:lemma:substr' | ||
| 251 | +1.976163 Strain b'+1:word:substr' | ||
| 252 | +1.976163 Strain b'-2:lemma:str' | ||
| 253 | +1.966819 Technique b'lemma:rnaseq' | ||
| 254 | +1.966819 Technique b'word:RNASeq' | ||
| 255 | +1.966131 O b'-2:lemma:myc' | ||
| 256 | +1.956221 O b'lemma:harbor' | ||
| 257 | +1.956221 O b'word:harboring' | ||
| 258 | +1.947790 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 259 | +1.947790 Gtype b'-1:word:\xe2\x88\x86' | ||
| 260 | +1.943715 O b'-1:lemma:lb' | ||
| 261 | +1.943715 O b'-1:word:LB' | ||
| 262 | +1.942277 O b'lemma:a' | ||
| 263 | +1.929064 Gversion b'lemma:chip-seq' | ||
| 264 | +1.918408 Technique b'word:RNA-Seq' | ||
| 265 | +1.915726 pH b'+1:postag:CD' | ||
| 266 | +1.882795 O b'+1:lemma:arca-8myc' | ||
| 267 | +1.882795 O b'+1:word:ArcA-8myc' | ||
| 268 | +1.881377 O b'-2:lemma:fructose' | ||
| 269 | +1.853522 O b'+1:postag:RB' | ||
| 270 | +1.851023 Supp b'postag:VBP' | ||
| 271 | +1.845767 Supp b'-2:lemma:induce' | ||
| 272 | +1.833461 Gtype b'lemma:\xce\xb4fur' | ||
| 273 | +1.833461 Gtype b'word:\xce\x94fur' | ||
| 274 | +1.825330 Gversion b'word:ChIP-Seq' | ||
| 275 | +1.815756 O b'-1:lemma:glucose' | ||
| 276 | +1.815756 O b'-1:word:glucose' | ||
| 277 | +1.815639 Gtype b'+1:lemma:with' | ||
| 278 | +1.815639 Gtype b'+1:word:with' | ||
| 279 | +1.809036 Gtype b'-2:lemma:delta' | ||
| 280 | +1.806217 Technique b'-1:lemma:chip-exo' | ||
| 281 | +1.804393 Temp b'isNumber' | ||
| 282 | +1.797896 O b'-1:word:tag' | ||
| 283 | +1.786674 Supp b'-2:lemma:purr' | ||
| 284 | +1.783032 Supp b'-2:lemma:argr' | ||
| 285 | +1.765681 O b'+2:postag:JJ' | ||
| 286 | +1.765181 Supp b'-1:postag:CC' | ||
| 287 | +1.753024 Air b'word:anaerobic' | ||
| 288 | +1.751122 Gtype b'-1:postag:VBG' | ||
| 289 | +1.742490 Supp b'-2:lemma:media' | ||
| 290 | +1.737277 Med b'+2:lemma:b1' | ||
| 291 | +1.734728 O b'+2:lemma:_' | ||
| 292 | +1.710506 Gtype b'+2:lemma:glucose' | ||
| 293 | +1.709022 Supp b'lemma:Leu' | ||
| 294 | +1.709022 Supp b'word:Leu' | ||
| 295 | +1.709022 Supp b'-2:lemma:Lrp' | ||
| 296 | +1.707829 Supp b'-2:lemma:condition' | ||
| 297 | +1.695253 Gtype b'lemma:\xce\xb4ompr' | ||
| 298 | +1.695253 Gtype b'word:\xce\x94ompR' | ||
| 299 | +1.687283 Med b'+1:lemma:0.4' | ||
| 300 | +1.687283 Med b'+1:word:0.4' | ||
| 301 | +1.680612 Air b'+1:postag:IN' | ||
| 302 | +1.676466 O b'lemma:soxs' | ||
| 303 | +1.676466 O b'word:SoxS' | ||
| 304 | +1.676466 O b'lemma:soxr' | ||
| 305 | +1.676466 O b'word:SoxR' | ||
| 306 | +1.666118 O b'lemma:Cra' | ||
| 307 | +1.639338 O b'-1:lemma:anaerobic' | ||
| 308 | +1.636477 O b'isLower' | ||
| 309 | +1.632852 Med b'lemma:media' | ||
| 310 | +1.632852 Med b'word:media' | ||
| 311 | +1.629462 O b'-2:lemma:treat' | ||
| 312 | +1.626732 Gtype b'lemma:dfnr' | ||
| 313 | +1.626732 Gtype b'word:dFNR' | ||
| 314 | +1.623468 O b'lemma:Custom' | ||
| 315 | +1.623468 O b'word:Custom' | ||
| 316 | +1.621644 O b'postag:CC' | ||
| 317 | +1.618806 Gtype b'lemma:\xce\xb4oxyr' | ||
| 318 | +1.618806 Gtype b'word:\xce\x94oxyR' | ||
| 319 | +1.618168 Med b'lemma:lb' | ||
| 320 | +1.618168 Med b'word:LB' | ||
| 321 | +1.618066 O b'-1:lemma:media' | ||
| 322 | +1.618066 O b'-1:word:media' | ||
| 323 | +1.611062 Gtype b'postag:JJ' | ||
| 324 | +1.608968 O b'lemma:argr' | ||
| 325 | +1.608968 O b'word:ArgR' | ||
| 326 | +1.603897 Gversion b'-2:lemma:nc' | ||
| 327 | +1.594090 O b'lemma:trpr' | ||
| 328 | +1.594090 O b'word:TrpR' | ||
| 329 | +1.583791 Air b'lemma:aerobic' | ||
| 330 | +1.567884 O b'+1:postag:VBP' | ||
| 331 | +1.567340 O b'-1:lemma:0.3' | ||
| 332 | +1.567340 O b'-1:word:0.3' | ||
| 333 | +1.561344 O b'lemma::' | ||
| 334 | +1.561344 O b'word::' | ||
| 335 | +1.560411 O b'lemma:rep2' | ||
| 336 | +1.560411 O b'word:rep2' | ||
| 337 | + | ||
| 338 | + | ||
| 339 | +Top negative: | ||
| 340 | +-0.317190 OD b'+2:postag:NN' | ||
| 341 | +-0.317236 O b'-2:postag::' | ||
| 342 | +-0.319090 O b'+1:lemma:2.0' | ||
| 343 | +-0.319090 O b'+1:word:2.0' | ||
| 344 | +-0.319182 O b'+2:lemma:30' | ||
| 345 | +-0.325633 O b'lemma:nh4cl' | ||
| 346 | +-0.326977 Temp b'+1:postag:IN' | ||
| 347 | +-0.328963 O b'lemma:methanol' | ||
| 348 | +-0.328963 O b'word:methanol' | ||
| 349 | +-0.328963 O b'-2:lemma:dissolve' | ||
| 350 | +-0.330771 O b'-1:lemma:rpob' | ||
| 351 | +-0.330771 O b'-1:word:RpoB' | ||
| 352 | +-0.332385 Supp b'+2:lemma:acetate' | ||
| 353 | +-0.336346 O b'+2:lemma:reference' | ||
| 354 | +-0.340150 Strain b'isLower' | ||
| 355 | +-0.351888 Phase b'+2:postag:NN' | ||
| 356 | +-0.354760 O b'-1:lemma:ph' | ||
| 357 | +-0.354760 O b'-1:word:pH' | ||
| 358 | +-0.356359 O b'word:tag' | ||
| 359 | +-0.356948 O b'-1:lemma:dissolve' | ||
| 360 | +-0.356948 O b'+1:lemma:methanol' | ||
| 361 | +-0.356948 O b'-1:word:dissolved' | ||
| 362 | +-0.356948 O b'+1:word:methanol' | ||
| 363 | +-0.360165 O b'lemma:aerobic' | ||
| 364 | +-0.361875 O b'-1:lemma:2' | ||
| 365 | +-0.361875 O b'-1:word:2' | ||
| 366 | +-0.364393 O b'lemma:medium' | ||
| 367 | +-0.364393 O b'word:medium' | ||
| 368 | +-0.364434 O b'lemma:anaerobic' | ||
| 369 | +-0.365818 O b'-1:lemma:co2' | ||
| 370 | +-0.365818 O b'-1:word:CO2' | ||
| 371 | +-0.372268 O b'-1:lemma:\xe2\x88\x86' | ||
| 372 | +-0.372268 O b'-1:word:\xe2\x88\x86' | ||
| 373 | +-0.380490 Temp b'isLower' | ||
| 374 | +-0.386775 O b'+1:lemma:1m' | ||
| 375 | +-0.386775 O b'+1:word:1M' | ||
| 376 | +-0.386775 O b'-2:lemma:vol' | ||
| 377 | +-0.390297 Supp b'-2:lemma:.' | ||
| 378 | +-0.390297 Supp b'-2:postag:.' | ||
| 379 | +-0.405236 O b'+2:lemma:fnr' | ||
| 380 | +-0.408221 O b'+2:lemma:mid-log' | ||
| 381 | +-0.413792 O b'lemma:fructose' | ||
| 382 | +-0.413792 O b'word:fructose' | ||
| 383 | +-0.413863 Temp b'-2:postag:NN' | ||
| 384 | +-0.414885 O b'-1:postag::' | ||
| 385 | +-0.422156 O b'+1:lemma:+' | ||
| 386 | +-0.422156 O b'+1:word:+' | ||
| 387 | +-0.427210 O b'-1:lemma:37' | ||
| 388 | +-0.427210 O b'-1:word:37' | ||
| 389 | +-0.429642 Supp b'+1:lemma:,' | ||
| 390 | +-0.429642 Supp b'+1:postag:,' | ||
| 391 | +-0.429642 Supp b'+1:word:,' | ||
| 392 | +-0.434934 O b'lemma:37' | ||
| 393 | +-0.434934 O b'word:37' | ||
| 394 | +-0.449375 O b'word:ChIP-exo' | ||
| 395 | +-0.453085 pH b'isUpper' | ||
| 396 | +-0.454154 O b'-2:lemma:IP' | ||
| 397 | +-0.455382 Temp b'+2:postag:IN' | ||
| 398 | +-0.460059 Air b'+1:postag:JJ' | ||
| 399 | +-0.464417 O b'-1:lemma:mm' | ||
| 400 | +-0.464417 O b'-1:word:mM' | ||
| 401 | +-0.467555 O b'+2:lemma:at' | ||
| 402 | +-0.467980 O b'lemma:anaerobically' | ||
| 403 | +-0.467980 O b'word:anaerobically' | ||
| 404 | +-0.470071 O b'-2:lemma:control' | ||
| 405 | +-0.471057 O b'+2:lemma:add' | ||
| 406 | +-0.480066 O b'+1:postag:IN' | ||
| 407 | +-0.484390 O b'lemma:of' | ||
| 408 | +-0.484390 O b'word:of' | ||
| 409 | +-0.485748 O b'lemma:aerobically' | ||
| 410 | +-0.485748 O b'word:aerobically' | ||
| 411 | +-0.496119 O b'-2:lemma:pahse' | ||
| 412 | +-0.501405 O b'-2:lemma:genome' | ||
| 413 | +-0.513871 O b'-2:postag:RB' | ||
| 414 | +-0.528240 O b'-2:postag:DT' | ||
| 415 | +-0.554221 O b'-1:lemma:ml' | ||
| 416 | +-0.554221 O b'-1:word:ml' | ||
| 417 | +-0.555233 O b'lemma:nitrogen' | ||
| 418 | +-0.555233 O b'word:nitrogen' | ||
| 419 | +-0.557362 O b'lemma:2h' | ||
| 420 | +-0.557362 O b'-1:lemma:additional' | ||
| 421 | +-0.557362 O b'word:2h' | ||
| 422 | +-0.557362 O b'-1:word:additional' | ||
| 423 | +-0.574744 O b'+1:postag:VBG' | ||
| 424 | +-0.577749 Supp b'+1:lemma:-lrb-' | ||
| 425 | +-0.577749 Supp b'+1:word:-LRB-' | ||
| 426 | +-0.584147 O b'-2:lemma:glucose' | ||
| 427 | +-0.589012 O b'+1:lemma:g/l' | ||
| 428 | +-0.589012 O b'+1:word:g/L' | ||
| 429 | +-0.592857 O b'lemma:glucose' | ||
| 430 | +-0.592857 O b'word:glucose' | ||
| 431 | +-0.601655 O b'-1:lemma:fresh' | ||
| 432 | +-0.601655 O b'-1:word:fresh' | ||
| 433 | +-0.603478 Supp b'+1:postag:-LRB-' | ||
| 434 | +-0.621366 O b'+1:lemma:in' | ||
| 435 | +-0.621366 O b'+1:word:in' | ||
| 436 | +-0.622465 O b'-1:lemma:30' | ||
| 437 | +-0.622465 O b'-1:word:30' | ||
| 438 | +-0.622636 Supp b'-1:postag:NNP' | ||
| 439 | +-0.623045 Temp b'postag:NN' | ||
| 440 | +-0.628719 O b'-2:lemma:minimal' | ||
| 441 | +-0.629272 O b'+2:lemma:250' | ||
| 442 | +-0.632193 Supp b'+1:postag:NNS' | ||
| 443 | +-0.632244 O b'-2:lemma:nh4cl' | ||
| 444 | +-0.639178 O b'+1:word:ChIP-exo' | ||
| 445 | +-0.641094 Anti b'+1:lemma:anti-fur' | ||
| 446 | +-0.641094 Anti b'+1:word:anti-Fur' | ||
| 447 | +-0.652774 Supp b'postag:CC' | ||
| 448 | +-0.659478 Agit b'isUpper' | ||
| 449 | +-0.660753 O b'-2:lemma:rpob' | ||
| 450 | +-0.662803 O b'+1:lemma:until' | ||
| 451 | +-0.662803 O b'+1:word:until' | ||
| 452 | +-0.684151 O b'-2:postag:SYM' | ||
| 453 | +-0.701908 O b'lemma:0.3' | ||
| 454 | +-0.701908 O b'word:0.3' | ||
| 455 | +-0.708244 O b'-2:lemma:aerobically' | ||
| 456 | +-0.717945 pH b'isLower' | ||
| 457 | +-0.724124 O b'-1:lemma:1' | ||
| 458 | +-0.724124 O b'-1:word:1' | ||
| 459 | +-0.748149 O b'lemma:media' | ||
| 460 | +-0.748149 O b'word:media' | ||
| 461 | +-0.748561 O b'-2:lemma:fresh' | ||
| 462 | +-0.766386 O b'-2:lemma:anaerobically' | ||
| 463 | +-0.773055 O b'-1:lemma:nsrr' | ||
| 464 | +-0.773055 O b'-1:word:NsrR' | ||
| 465 | +-0.780146 O b'lemma:\xce\xb4fur' | ||
| 466 | +-0.780146 O b'word:\xce\x94fur' | ||
| 467 | +-0.780683 O b'-1:lemma:grow' | ||
| 468 | +-0.793481 Supp b'+2:postag:CD' | ||
| 469 | +-0.793996 Supp b'+2:lemma:glucose' | ||
| 470 | +-0.802497 Phase b'isUpper' | ||
| 471 | +-0.818377 O b'+2:lemma:b' | ||
| 472 | +-0.827115 O b'lemma:nitrate' | ||
| 473 | +-0.827115 O b'word:nitrate' | ||
| 474 | +-0.842837 O b'-2:lemma:dpd' | ||
| 475 | +-0.844530 Anti b'isUpper' | ||
| 476 | +-0.848235 O b'lemma:wt' | ||
| 477 | +-0.848520 Supp b'-2:lemma:treat' | ||
| 478 | +-0.856415 O b'-1:lemma:chip-exo' | ||
| 479 | +-0.857668 O b'-2:lemma:rifampicin' | ||
| 480 | +-0.870943 Med b'-2:postag:VBN' | ||
| 481 | +-0.880457 Med b'-1:postag:NN' | ||
| 482 | +-0.892873 Supp b'-2:postag:JJ' | ||
| 483 | +-0.904754 O b'+1:lemma:at' | ||
| 484 | +-0.904754 O b'+1:word:at' | ||
| 485 | +-0.911903 Med b'+2:postag:VBN' | ||
| 486 | +-0.952984 Air b'postag:NN' | ||
| 487 | +-0.961352 Technique b'isNumber' | ||
| 488 | +-0.969534 O b'lemma:rifampicin' | ||
| 489 | +-0.969534 O b'word:rifampicin' | ||
| 490 | +-0.972230 Gtype b'isNumber' | ||
| 491 | +-0.979689 O b'-1:lemma:vol' | ||
| 492 | +-0.979689 O b'-1:word:vol' | ||
| 493 | +-0.979689 O b'-2:lemma:1/100' | ||
| 494 | +-0.979689 O b'+2:lemma:1m' | ||
| 495 | +-0.994381 O b'lemma:mid-log' | ||
| 496 | +-0.994381 O b'word:mid-log' | ||
| 497 | +-0.998905 O b'-1:lemma:IP' | ||
| 498 | +-0.998905 O b'-1:word:IP' | ||
| 499 | +-1.010402 O b'-1:lemma:sample' | ||
| 500 | +-1.039200 O b'+2:lemma:then' | ||
| 501 | +-1.063285 Supp b'-2:lemma:grow' | ||
| 502 | +-1.070057 Gversion b'isLower' | ||
| 503 | +-1.088636 O b'-2:lemma::' | ||
| 504 | +-1.111068 O b'+2:lemma:rifampicin' | ||
| 505 | +-1.141806 O b'lemma:30' | ||
| 506 | +-1.141806 O b'word:30' | ||
| 507 | +-1.155863 Gtype b'isLower' | ||
| 508 | +-1.158383 O b'-2:lemma:media' | ||
| 509 | +-1.163155 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 510 | +-1.183034 O b'-2:lemma:phase' | ||
| 511 | +-1.187663 O b'-2:lemma:until' | ||
| 512 | +-1.205548 O b'+2:lemma:+' | ||
| 513 | +-1.219191 Technique b'isLower' | ||
| 514 | +-1.223177 O b'postag:RB' | ||
| 515 | +-1.253855 OD b'+1:postag:NN' | ||
| 516 | +-1.256714 O b'+1:lemma:1' | ||
| 517 | +-1.256714 O b'+1:word:1' | ||
| 518 | +-1.263687 Anti b'+2:lemma:polyclonal' | ||
| 519 | +-1.291590 O b'+2:lemma:for' | ||
| 520 | +-1.317736 Gtype b'+2:lemma:cra' | ||
| 521 | +-1.346822 Supp b'postag:JJ' | ||
| 522 | +-1.369654 Gtype b'postag:VBG' | ||
| 523 | +-1.433422 O b'postag:VBP' | ||
| 524 | +-1.476722 O b'+1:lemma:2' | ||
| 525 | +-1.476722 O b'+1:word:2' | ||
| 526 | +-1.525519 O b'-2:lemma:0.3' | ||
| 527 | +-1.666455 Supp b'+2:lemma:1' | ||
| 528 | +-1.826364 Med b'-2:lemma:grow' | ||
| 529 | +-1.900619 Phase b'-1:postag:JJ' | ||
| 530 | +-1.925903 Supp b'+2:lemma:2' | ||
| 531 | +-2.114791 O b'-1:postag:VBG' | ||
| 532 | +-2.153462 Supp b'+2:lemma:fructose' | ||
| 533 | +-2.237029 Anti b'postag:NNP' | ||
| 534 | +-2.314282 O b'-1:lemma::' | ||
| 535 | +-2.314282 O b'-1:word::' | ||
| 536 | +-2.363285 O b'-1:lemma:_' | ||
| 537 | +-2.363285 O b'-1:word:_' | ||
| 538 | +-2.770952 OD b'+2:lemma:aerobically' | ||
| 539 | +-3.794024 Phase b'postag:JJ' | ||
| 540 | + |
CRF/reports/report_Run_8_v12.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.16987113834357556, 'c2': 0.04496913983225195} | ||
| 5 | +best CV score:0.8747625195626942 | ||
| 6 | +model size: 0.13M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7884082577489101 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.818 0.818 0.818 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 1.000 1.000 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 0.923 0.828 0.873 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.875 0.933 0.903 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.864 0.824 0.843 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.712 0.813 0.760 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.801 0.785 0.788 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +OD -> OD 5.257890 | ||
| 32 | +Temp -> Temp 5.205804 | ||
| 33 | +Med -> Med 4.966902 | ||
| 34 | +Supp -> Supp 4.928476 | ||
| 35 | +Agit -> Agit 4.916983 | ||
| 36 | +Anti -> Anti 4.149202 | ||
| 37 | +Air -> Air 3.992915 | ||
| 38 | +Gversion -> Gversion 3.819753 | ||
| 39 | +Gtype -> Gtype 3.718805 | ||
| 40 | +Phase -> Phase 3.610359 | ||
| 41 | +O -> O 3.452915 | ||
| 42 | +Technique -> Technique 3.113366 | ||
| 43 | +pH -> pH 2.349939 | ||
| 44 | +Substrain -> Gtype 0.775262 | ||
| 45 | +O -> Technique 0.770450 | ||
| 46 | +O -> Supp 0.669913 | ||
| 47 | +Air -> O 0.473830 | ||
| 48 | +Gtype -> Supp 0.462636 | ||
| 49 | +O -> Gtype 0.453324 | ||
| 50 | +Supp -> O 0.311331 | ||
| 51 | +Med -> O 0.264436 | ||
| 52 | +Gtype -> Air 0.183444 | ||
| 53 | +Temp -> O 0.158941 | ||
| 54 | +Technique -> Air 0.108884 | ||
| 55 | +O -> Phase 0.000506 | ||
| 56 | +Air -> Supp -0.000185 | ||
| 57 | +Supp -> Gtype -0.002878 | ||
| 58 | +O -> OD -0.009866 | ||
| 59 | +Supp -> Technique -0.043400 | ||
| 60 | +Technique -> Gtype -0.047071 | ||
| 61 | +Anti -> O -0.051496 | ||
| 62 | +Gtype -> Anti -0.117353 | ||
| 63 | +O -> Med -0.118983 | ||
| 64 | +Technique -> pH -0.211980 | ||
| 65 | +OD -> Air -0.228543 | ||
| 66 | +Gversion -> O -0.264567 | ||
| 67 | +Gtype -> Med -0.386243 | ||
| 68 | +Supp -> Med -0.413936 | ||
| 69 | +Gtype -> Technique -0.493289 | ||
| 70 | +O -> Air -0.579308 | ||
| 71 | +Technique -> O -0.694824 | ||
| 72 | +Gtype -> O -0.998730 | ||
| 73 | +Med -> Supp -1.066796 | ||
| 74 | +Substrain -> O -1.093891 | ||
| 75 | + | ||
| 76 | + | ||
| 77 | +Top unlikely transitions: | ||
| 78 | +OD -> OD 5.257890 | ||
| 79 | +Temp -> Temp 5.205804 | ||
| 80 | +Med -> Med 4.966902 | ||
| 81 | +Supp -> Supp 4.928476 | ||
| 82 | +Agit -> Agit 4.916983 | ||
| 83 | +Anti -> Anti 4.149202 | ||
| 84 | +Air -> Air 3.992915 | ||
| 85 | +Gversion -> Gversion 3.819753 | ||
| 86 | +Gtype -> Gtype 3.718805 | ||
| 87 | +Phase -> Phase 3.610359 | ||
| 88 | +O -> O 3.452915 | ||
| 89 | +Technique -> Technique 3.113366 | ||
| 90 | +pH -> pH 2.349939 | ||
| 91 | +Substrain -> Gtype 0.775262 | ||
| 92 | +O -> Technique 0.770450 | ||
| 93 | +O -> Supp 0.669913 | ||
| 94 | +Air -> O 0.473830 | ||
| 95 | +Gtype -> Supp 0.462636 | ||
| 96 | +O -> Gtype 0.453324 | ||
| 97 | +Supp -> O 0.311331 | ||
| 98 | +Med -> O 0.264436 | ||
| 99 | +Gtype -> Air 0.183444 | ||
| 100 | +Temp -> O 0.158941 | ||
| 101 | +Technique -> Air 0.108884 | ||
| 102 | +O -> Phase 0.000506 | ||
| 103 | +Air -> Supp -0.000185 | ||
| 104 | +Supp -> Gtype -0.002878 | ||
| 105 | +O -> OD -0.009866 | ||
| 106 | +Supp -> Technique -0.043400 | ||
| 107 | +Technique -> Gtype -0.047071 | ||
| 108 | +Anti -> O -0.051496 | ||
| 109 | +Gtype -> Anti -0.117353 | ||
| 110 | +O -> Med -0.118983 | ||
| 111 | +Technique -> pH -0.211980 | ||
| 112 | +OD -> Air -0.228543 | ||
| 113 | +Gversion -> O -0.264567 | ||
| 114 | +Gtype -> Med -0.386243 | ||
| 115 | +Supp -> Med -0.413936 | ||
| 116 | +Gtype -> Technique -0.493289 | ||
| 117 | +O -> Air -0.579308 | ||
| 118 | +Technique -> O -0.694824 | ||
| 119 | +Gtype -> O -0.998730 | ||
| 120 | +Med -> Supp -1.066796 | ||
| 121 | +Substrain -> O -1.093891 | ||
| 122 | + | ||
| 123 | + | ||
| 124 | +Top positive: | ||
| 125 | +4.452085 Anti b'-2:lemma:antibody' | ||
| 126 | +3.689675 O b'word[:2]:re' | ||
| 127 | +3.482630 Gtype b'word[:1]:\xce\x94' | ||
| 128 | +3.342489 O b'-2:lemma:_' | ||
| 129 | +3.175684 Technique b'word[:2]:Ch' | ||
| 130 | +2.884271 OD b'word[:1]:O' | ||
| 131 | +2.741246 Air b'word[:2]:An' | ||
| 132 | +2.637598 Air b'word[:2]:Ae' | ||
| 133 | +2.637598 Air b'word:Aerobic' | ||
| 134 | +2.617531 Air b'lemma:anaerobic' | ||
| 135 | +2.537522 O b'word:A' | ||
| 136 | +2.494524 O b'lemma:2' | ||
| 137 | +2.494524 O b'word:2' | ||
| 138 | +2.467001 Air b'word[:1]:A' | ||
| 139 | +2.363811 Technique b'word[:2]:RN' | ||
| 140 | +2.310310 O b'-2:lemma:medium' | ||
| 141 | +2.291922 Gtype b'-2:lemma:genotype/variation' | ||
| 142 | +2.286103 Supp b'-1:word:Cra' | ||
| 143 | +2.272015 Phase b'-2:lemma:phase' | ||
| 144 | +2.201967 O b'word[:1]:S' | ||
| 145 | +2.155778 O b'lemma:_' | ||
| 146 | +2.155778 O b'word[:1]:_' | ||
| 147 | +2.155778 O b'word:_' | ||
| 148 | +2.134515 Med b'+2:postag:CC' | ||
| 149 | +2.110513 O b'lemma:1' | ||
| 150 | +2.110513 O b'word:1' | ||
| 151 | +2.050395 Gtype b'lemma:wt' | ||
| 152 | +2.025579 Supp b'lemma:arginine' | ||
| 153 | +2.025478 O b'word[:1]:G' | ||
| 154 | +2.007953 Gtype b'word[:1]:d' | ||
| 155 | +1.995272 Gtype b'word[:1]:W' | ||
| 156 | +1.982181 O b'lemma:3' | ||
| 157 | +1.982181 O b'word:3' | ||
| 158 | +1.957486 Gtype b'word[:2]:Fl' | ||
| 159 | +1.925967 Supp b'word[:1]:I' | ||
| 160 | +1.897045 O b'isNumber' | ||
| 161 | +1.871338 Air b'word[:2]:an' | ||
| 162 | +1.870496 Gtype b'hGreek' | ||
| 163 | +1.858144 O b'+2:lemma:cra' | ||
| 164 | +1.842813 Phase b'lemma:mid-log' | ||
| 165 | +1.842813 Phase b'word:mid-log' | ||
| 166 | +1.762000 Supp b'+2:lemma:iptg' | ||
| 167 | +1.751693 Supp b'word[:2]:Fe' | ||
| 168 | +1.733316 Air b'word[:1]:a' | ||
| 169 | +1.731487 O b'isLower' | ||
| 170 | +1.710681 Substrain b'word[:2]:MG' | ||
| 171 | +1.697395 Anti b'+2:lemma:antibody' | ||
| 172 | +1.693427 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 173 | +1.693427 Gtype b'-1:word:\xe2\x88\x86' | ||
| 174 | +1.672893 O b'postag:IN' | ||
| 175 | +1.672893 O b'postag[:1]:I' | ||
| 176 | +1.672893 O b'postag[:2]:IN' | ||
| 177 | +1.663254 Anti b'word[:2]:an' | ||
| 178 | +1.662524 Gtype b'-2:lemma:delta' | ||
| 179 | +1.648718 Supp b'word[:2]:ni' | ||
| 180 | +1.648211 pH b'word[:2]:pH' | ||
| 181 | +1.646384 pH b'+1:postag:CD' | ||
| 182 | +1.643762 O b'+2:lemma:\xc2\xb0c' | ||
| 183 | +1.636843 Substrain b'word[:1]:M' | ||
| 184 | +1.623586 Supp b'-1:lemma:with' | ||
| 185 | +1.623586 Supp b'-1:word:with' | ||
| 186 | +1.616923 O b'lemma:-' | ||
| 187 | +1.616923 O b'word:-' | ||
| 188 | +1.616244 O b'word[:2]:ge' | ||
| 189 | +1.597930 Supp b'-1:postag:CC' | ||
| 190 | +1.597275 Gtype b'word[:2]:PK' | ||
| 191 | +1.582027 O b'-1:word:Aerobic' | ||
| 192 | +1.576810 O b'lemma:.' | ||
| 193 | +1.576810 O b'postag:.' | ||
| 194 | +1.576810 O b'postag[:1]:.' | ||
| 195 | +1.576810 O b'word:.' | ||
| 196 | +1.554293 Gtype b'word[:1]:w' | ||
| 197 | +1.551110 O b'word[:1]:B' | ||
| 198 | +1.546507 O b'-1:word:tag' | ||
| 199 | +1.529700 Gtype b'lemma:type' | ||
| 200 | +1.529700 Gtype b'word[:2]:ty' | ||
| 201 | +1.529700 Gtype b'word:type' | ||
| 202 | +1.517044 Supp b'lemma:acetate' | ||
| 203 | +1.517044 Supp b'word:acetate' | ||
| 204 | +1.513375 O b'-2:lemma:myc' | ||
| 205 | +1.510589 O b'-1:lemma:tag' | ||
| 206 | +1.507823 O b'word[:2]:Rp' | ||
| 207 | +1.507742 Technique b'word[:1]:R' | ||
| 208 | +1.482889 Technique b'word[:1]:C' | ||
| 209 | +1.482481 Supp b'lemma:pq' | ||
| 210 | +1.482481 Supp b'word[:2]:PQ' | ||
| 211 | +1.482481 Supp b'word:PQ' | ||
| 212 | +1.481495 O b'word[:1]:-' | ||
| 213 | +1.480627 O b'postag::' | ||
| 214 | +1.480627 O b'postag[:1]::' | ||
| 215 | +1.477504 Med b'isUpper' | ||
| 216 | +1.439532 O b'word[:1]:C' | ||
| 217 | +1.433463 Air b'+1:postag:IN' | ||
| 218 | +1.417597 O b'word[:1]:R' | ||
| 219 | +1.408489 Technique b'lemma:ChIP-exo' | ||
| 220 | +1.399469 O b'lemma:a' | ||
| 221 | +1.374497 Temp b'isNumber' | ||
| 222 | +1.369743 O b'postag:CC' | ||
| 223 | +1.369743 O b'postag[:2]:CC' | ||
| 224 | +1.369445 O b'-1:lemma:anaerobic' | ||
| 225 | +1.366915 Temp b'+2:postag:DT' | ||
| 226 | +1.360275 Supp b'+1:lemma:\xc2\xb5m' | ||
| 227 | +1.360275 Supp b'+1:word:\xc2\xb5M' | ||
| 228 | +1.348179 Supp b'-1:lemma:Cra' | ||
| 229 | +1.343465 Supp b'word[:2]:gl' | ||
| 230 | +1.337575 O b'lemma:with' | ||
| 231 | +1.337575 O b'word:with' | ||
| 232 | +1.334448 O b'+2:postag:JJ' | ||
| 233 | +1.332963 Supp b'word[:1]:N' | ||
| 234 | +1.325155 Med b'word[:1]:L' | ||
| 235 | +1.308365 Supp b'lemma:Iron' | ||
| 236 | +1.308365 Supp b'word[:2]:Ir' | ||
| 237 | +1.308365 Supp b'word:Iron' | ||
| 238 | +1.308365 Supp b'+1:word:Deficient' | ||
| 239 | +1.308365 Supp b'-2:lemma:Anaerobic' | ||
| 240 | +1.291354 Med b'word[:1]:M' | ||
| 241 | +1.290809 Gtype b'word[:1]:F' | ||
| 242 | +1.288935 Med b'lemma:MOPS' | ||
| 243 | +1.288935 Med b'word[:2]:MO' | ||
| 244 | +1.288935 Med b'word:MOPS' | ||
| 245 | +1.282537 Gtype b'word[:1]:t' | ||
| 246 | +1.278434 O b'+1:word:ChIP-Seq' | ||
| 247 | +1.273443 Supp b'-2:lemma:for' | ||
| 248 | +1.255541 Gtype b'-2:postag:DT' | ||
| 249 | +1.255203 Technique b'+2:lemma:ph5' | ||
| 250 | +1.250661 Air b'word:Anaerobic' | ||
| 251 | +1.236252 O b'word[:2]:ch' | ||
| 252 | +1.233756 pH b'word[:1]:p' | ||
| 253 | +1.233479 Gtype b'lemma:\xe2\x88\x86' | ||
| 254 | +1.233479 Gtype b'word[:1]:\xe2\x88\x86' | ||
| 255 | +1.233479 Gtype b'word:\xe2\x88\x86' | ||
| 256 | +1.228084 Gtype b'+2:lemma:glucose' | ||
| 257 | +1.223922 O b'+2:lemma:fructose' | ||
| 258 | +1.218698 Gtype b'symb' | ||
| 259 | +1.217647 O b'word[:2]:ha' | ||
| 260 | +1.215512 Strain b'+1:lemma:substr' | ||
| 261 | +1.215512 Strain b'+1:word:substr' | ||
| 262 | +1.215512 Strain b'-2:lemma:str' | ||
| 263 | +1.196793 O b'-1:lemma:glucose' | ||
| 264 | +1.196793 O b'-1:word:glucose' | ||
| 265 | +1.194057 Supp b'-2:lemma:media' | ||
| 266 | +1.184144 O b'-1:lemma:0.3' | ||
| 267 | +1.184144 O b'-1:word:0.3' | ||
| 268 | +1.183310 OD b'-1:postag:IN' | ||
| 269 | +1.178980 O b'word[:1]:c' | ||
| 270 | +1.176425 Supp b'word[:2]:ac' | ||
| 271 | +1.170284 Gversion b'lemma:chip-seq' | ||
| 272 | +1.168235 Gtype b'-2:lemma:affyexp' | ||
| 273 | +1.164552 Gtype b'word[:1]:P' | ||
| 274 | +1.156202 Gversion b'word:ChIP-Seq' | ||
| 275 | +1.156155 O b'-1:lemma:lb' | ||
| 276 | +1.156155 O b'-1:word:LB' | ||
| 277 | +1.149395 O b'-1:lemma:ChIP-exo' | ||
| 278 | +1.146734 Phase b'word[:2]:ex' | ||
| 279 | +1.142864 Gtype b'word[:2]:WT' | ||
| 280 | +1.142864 Gtype b'word:WT' | ||
| 281 | +1.140128 Agit b'+2:lemma:at' | ||
| 282 | +1.135341 O b'+1:postag:VBN' | ||
| 283 | +1.135006 Anti b'+1:lemma:antibody' | ||
| 284 | +1.135006 Anti b'+1:word:antibody' | ||
| 285 | +1.134467 O b'postag:VBN' | ||
| 286 | +1.130287 Supp b'+1:lemma:1' | ||
| 287 | +1.130287 Supp b'+1:word:1' | ||
| 288 | +1.118529 Supp b'postag:VBP' | ||
| 289 | +1.111752 Gtype b'-1:postag:VBG' | ||
| 290 | +1.108134 O b'+1:postag:RB' | ||
| 291 | +1.101074 Temp b'lemma:43' | ||
| 292 | +1.101074 Temp b'word[:2]:43' | ||
| 293 | +1.101074 Temp b'word:43' | ||
| 294 | +1.096502 Supp b'lemma:nacl' | ||
| 295 | +1.096502 Supp b'word:NaCl' | ||
| 296 | +1.094797 O b'word[:2]:Cr' | ||
| 297 | +1.090348 Gtype b'-2:lemma:genotype' | ||
| 298 | +1.090152 Temp b'word[:1]:3' | ||
| 299 | +1.085633 Temp b'-2:lemma:30' | ||
| 300 | +1.082487 O b'-2:lemma:fructose' | ||
| 301 | +1.079531 Gtype b'lemma:nsrr' | ||
| 302 | +1.079531 Gtype b'word[:2]:Ns' | ||
| 303 | +1.079531 Gtype b'word:NsrR' | ||
| 304 | +1.079097 Technique b'symb' | ||
| 305 | +1.077150 Temp b'isUpper' | ||
| 306 | +1.072640 Phase b'word[:1]:e' | ||
| 307 | +1.071712 O b'-2:lemma:flagtag' | ||
| 308 | +1.071622 Technique b'lemma:rna-seq' | ||
| 309 | +1.057972 O b'lemma:b' | ||
| 310 | +1.057972 O b'word:B' | ||
| 311 | +1.057103 Med b'+2:lemma:b2' | ||
| 312 | +1.055515 O b'-1:lemma:media' | ||
| 313 | +1.055515 O b'-1:word:media' | ||
| 314 | +1.054647 O b'+2:lemma:70' | ||
| 315 | +1.051568 Gtype b'+2:lemma:a' | ||
| 316 | +1.051055 Med b'word[:2]:me' | ||
| 317 | +1.050903 Supp b'+2:lemma:rifampicin' | ||
| 318 | +1.049213 O b'word[:1]:E' | ||
| 319 | +1.038966 O b'+1:lemma:pq' | ||
| 320 | +1.038966 O b'+1:word:PQ' | ||
| 321 | +1.036931 Substrain b'-2:lemma:substr' | ||
| 322 | +1.036271 Med b'word[:1]:g' | ||
| 323 | +1.024899 Supp b'-2:lemma:condition' | ||
| 324 | +1.019819 O b'lemma:Custom' | ||
| 325 | + | ||
| 326 | + | ||
| 327 | +Top negative: | ||
| 328 | +-0.233766 O b'-1:lemma:final' | ||
| 329 | +-0.233766 O b'-1:word:final' | ||
| 330 | +-0.234091 O b'+2:lemma:-rrb-' | ||
| 331 | +-0.234779 O b'-1:postag:-LRB-' | ||
| 332 | +-0.238119 Phase b'postag[:1]:J' | ||
| 333 | +-0.238119 Phase b'postag[:2]:JJ' | ||
| 334 | +-0.239654 O b'-2:lemma:a' | ||
| 335 | +-0.240870 O b'+2:lemma:add' | ||
| 336 | +-0.242028 O b'lemma:nitrate' | ||
| 337 | +-0.242028 O b'word:nitrate' | ||
| 338 | +-0.245388 Supp b'-1:lemma:-lrb-' | ||
| 339 | +-0.245388 Supp b'-1:word:-LRB-' | ||
| 340 | +-0.248207 O b'-2:lemma:at' | ||
| 341 | +-0.248837 Air b'isLower' | ||
| 342 | +-0.249358 Supp b'+1:lemma:-lrb-' | ||
| 343 | +-0.249358 Supp b'+1:word:-LRB-' | ||
| 344 | +-0.254940 O b'-2:lemma:rpob' | ||
| 345 | +-0.256776 Supp b'hGreek' | ||
| 346 | +-0.256897 O b'-2:lemma:2' | ||
| 347 | +-0.259614 Supp b'+1:postag:-LRB-' | ||
| 348 | +-0.260142 O b'-2:lemma:fresh' | ||
| 349 | +-0.261060 O b'+1:lemma:+' | ||
| 350 | +-0.261060 O b'+1:word:+' | ||
| 351 | +-0.262071 O b'lemma:2h' | ||
| 352 | +-0.262071 O b'-1:lemma:additional' | ||
| 353 | +-0.262071 O b'word[:2]:2h' | ||
| 354 | +-0.262071 O b'word:2h' | ||
| 355 | +-0.262071 O b'-1:word:additional' | ||
| 356 | +-0.268722 Supp b'word[:2]:an' | ||
| 357 | +-0.270059 Supp b'-1:postag:-LRB-' | ||
| 358 | +-0.274315 O b'+1:lemma:g/l' | ||
| 359 | +-0.274315 O b'+1:word:g/L' | ||
| 360 | +-0.274906 O b'-2:lemma:IP' | ||
| 361 | +-0.275720 Gtype b'isNumber' | ||
| 362 | +-0.280363 O b'-2:lemma:anaerobically' | ||
| 363 | +-0.282585 O b'lemma:0.3' | ||
| 364 | +-0.282585 O b'word:0.3' | ||
| 365 | +-0.284842 O b'word[:2]:gl' | ||
| 366 | +-0.287099 O b'lemma:30' | ||
| 367 | +-0.287099 O b'word:30' | ||
| 368 | +-0.289399 O b'+2:lemma:tag' | ||
| 369 | +-0.289844 Anti b'isUpper' | ||
| 370 | +-0.292297 O b'-1:lemma:control' | ||
| 371 | +-0.292297 O b'-1:word:control' | ||
| 372 | +-0.292666 O b'+1:lemma:1m' | ||
| 373 | +-0.292666 O b'+1:word:1M' | ||
| 374 | +-0.292666 O b'-2:lemma:vol' | ||
| 375 | +-0.294625 O b'+1:lemma:.' | ||
| 376 | +-0.294625 O b'+1:postag:.' | ||
| 377 | +-0.294625 O b'+1:word:.' | ||
| 378 | +-0.294876 Temp b'postag:NN' | ||
| 379 | +-0.297833 O b'-1:lemma:ph' | ||
| 380 | +-0.297833 O b'-1:word:pH' | ||
| 381 | +-0.298423 Technique b'isLower' | ||
| 382 | +-0.300990 Temp b'-2:postag:NN' | ||
| 383 | +-0.305286 O b'-1:lemma:dissolve' | ||
| 384 | +-0.305286 O b'+1:lemma:methanol' | ||
| 385 | +-0.305286 O b'-1:word:dissolved' | ||
| 386 | +-0.305286 O b'+1:word:methanol' | ||
| 387 | +-0.314748 O b'-2:lemma:pahse' | ||
| 388 | +-0.315937 O b'-1:lemma:mm' | ||
| 389 | +-0.315937 O b'-1:word:mM' | ||
| 390 | +-0.322399 Gtype b'word[:1]:h' | ||
| 391 | +-0.323125 OD b'hUpper' | ||
| 392 | +-0.323125 OD b'hLower' | ||
| 393 | +-0.331381 O b'-1:lemma:rpob' | ||
| 394 | +-0.331381 O b'-1:word:RpoB' | ||
| 395 | +-0.339459 O b'-1:postag:IN' | ||
| 396 | +-0.341910 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 397 | +-0.342651 O b'lemma:of' | ||
| 398 | +-0.342651 O b'word[:2]:of' | ||
| 399 | +-0.342651 O b'word:of' | ||
| 400 | +-0.342819 O b'+2:lemma:fnr' | ||
| 401 | +-0.347959 Med b'+1:postag:IN' | ||
| 402 | +-0.356951 O b'-1:lemma:30' | ||
| 403 | +-0.356951 O b'-1:word:30' | ||
| 404 | +-0.358047 O b'-1:lemma:IP' | ||
| 405 | +-0.358047 O b'-1:word:IP' | ||
| 406 | +-0.360899 O b'+1:lemma:until' | ||
| 407 | +-0.360899 O b'+1:word:until' | ||
| 408 | +-0.364934 O b'-2:lemma:of' | ||
| 409 | +-0.365442 Anti b'+1:lemma:anti-fur' | ||
| 410 | +-0.365442 Anti b'+1:word:anti-Fur' | ||
| 411 | +-0.367544 Med b'+1:postag:NN' | ||
| 412 | +-0.372074 O b'word[:1]:0' | ||
| 413 | +-0.374136 O b'word[:2]:pH' | ||
| 414 | +-0.388322 Supp b'postag:JJ' | ||
| 415 | +-0.391570 Supp b'postag[:1]:J' | ||
| 416 | +-0.391570 Supp b'postag[:2]:JJ' | ||
| 417 | +-0.405960 O b'word[:2]:mg' | ||
| 418 | +-0.412894 O b'-2:lemma:dpd' | ||
| 419 | +-0.416528 Supp b'+1:lemma:,' | ||
| 420 | +-0.416528 Supp b'+1:postag:,' | ||
| 421 | +-0.416528 Supp b'+1:word:,' | ||
| 422 | +-0.419392 O b'+2:lemma:.' | ||
| 423 | +-0.419392 O b'+2:postag:.' | ||
| 424 | +-0.422296 O b'-1:lemma:nsrr' | ||
| 425 | +-0.422296 O b'-1:word:NsrR' | ||
| 426 | +-0.423145 O b'-2:lemma:phase' | ||
| 427 | +-0.426000 O b'+2:lemma:10' | ||
| 428 | +-0.432994 O b'-2:lemma:glucose' | ||
| 429 | +-0.450062 Agit b'symb' | ||
| 430 | +-0.450812 Agit b'hUpper' | ||
| 431 | +-0.450812 Agit b'hLower' | ||
| 432 | +-0.475356 pH b'isLower' | ||
| 433 | +-0.476636 Air b'-1:postag:JJ' | ||
| 434 | +-0.481749 O b'+2:lemma:a' | ||
| 435 | +-0.485266 O b'+2:lemma:250' | ||
| 436 | +-0.496343 O b'word[:2]:ri' | ||
| 437 | +-0.500963 O b'-2:lemma:supplement' | ||
| 438 | +-0.502478 O b'-1:lemma:1' | ||
| 439 | +-0.502478 O b'-1:word:1' | ||
| 440 | +-0.505892 O b'-1:lemma:vol' | ||
| 441 | +-0.505892 O b'-1:word:vol' | ||
| 442 | +-0.505892 O b'-2:lemma:1/100' | ||
| 443 | +-0.505892 O b'+2:lemma:1m' | ||
| 444 | +-0.509659 O b'-2:lemma:until' | ||
| 445 | +-0.510236 O b'-2:postag:-LRB-' | ||
| 446 | +-0.521161 O b'-1:lemma:co2' | ||
| 447 | +-0.521161 O b'-1:word:CO2' | ||
| 448 | +-0.528448 Supp b'+2:postag:NNP' | ||
| 449 | +-0.528535 O b'-2:postag::' | ||
| 450 | +-0.533872 O b'+2:lemma:at' | ||
| 451 | +-0.534880 O b'word[:1]:K' | ||
| 452 | +-0.535293 Med b'+2:postag:VBN' | ||
| 453 | +-0.541773 Supp b'+2:lemma:glucose' | ||
| 454 | +-0.545876 Phase b'postag:JJ' | ||
| 455 | +-0.551702 O b'lemma:rifampicin' | ||
| 456 | +-0.551702 O b'word:rifampicin' | ||
| 457 | +-0.552442 Supp b'-1:postag:NNP' | ||
| 458 | +-0.558246 Gtype b'postag[:1]:V' | ||
| 459 | +-0.558246 Gtype b'postag[:2]:VB' | ||
| 460 | +-0.563240 Med b'-1:postag:NN' | ||
| 461 | +-0.571846 O b'+2:lemma:mid-log' | ||
| 462 | +-0.577127 O b'lemma:wt' | ||
| 463 | +-0.617765 Supp b'symb' | ||
| 464 | +-0.618558 Supp b'-2:postag:JJ' | ||
| 465 | +-0.624362 O b'+1:lemma:2.0' | ||
| 466 | +-0.624362 O b'+1:word:2.0' | ||
| 467 | +-0.628911 O b'word[:2]:fl' | ||
| 468 | +-0.645255 O b'-2:lemma:media' | ||
| 469 | +-0.647985 O b'lemma:mid-log' | ||
| 470 | +-0.647985 O b'word:mid-log' | ||
| 471 | +-0.657965 Anti b'+2:lemma:polyclonal' | ||
| 472 | +-0.658210 O b'word[:2]:ni' | ||
| 473 | +-0.659228 O b'+1:lemma:at' | ||
| 474 | +-0.659228 O b'+1:word:at' | ||
| 475 | +-0.660590 O b'+1:postag:VBG' | ||
| 476 | +-0.660829 O b'-2:lemma::' | ||
| 477 | +-0.663451 Supp b'word[:1]:C' | ||
| 478 | +-0.672793 Med b'symb' | ||
| 479 | +-0.694489 O b'+2:lemma:+' | ||
| 480 | +-0.709178 O b'-1:lemma:2' | ||
| 481 | +-0.709178 O b'-1:word:2' | ||
| 482 | +-0.714094 Phase b'hUpper' | ||
| 483 | +-0.714094 Phase b'hLower' | ||
| 484 | +-0.761826 Gtype b'isUpper' | ||
| 485 | +-0.767486 O b'+1:lemma:in' | ||
| 486 | +-0.767486 O b'+1:word:in' | ||
| 487 | +-0.770064 O b'+1:postag:IN' | ||
| 488 | +-0.778369 O b'+2:lemma:rifampicin' | ||
| 489 | +-0.779812 Air b'postag:NN' | ||
| 490 | +-0.789169 Anti b'postag:NNP' | ||
| 491 | +-0.794413 O b'-1:lemma:sample' | ||
| 492 | +-0.827931 O b'+1:lemma:1' | ||
| 493 | +-0.827931 O b'+1:word:1' | ||
| 494 | +-0.858848 O b'word[:1]:N' | ||
| 495 | +-0.876126 Gversion b'isLower' | ||
| 496 | +-0.907230 O b'+2:postag:-RRB-' | ||
| 497 | +-0.914704 Phase b'-1:postag:JJ' | ||
| 498 | +-0.930998 Gtype b'word[:1]:C' | ||
| 499 | +-0.934673 Med b'-2:lemma:grow' | ||
| 500 | +-0.947305 O b'-2:lemma:rifampicin' | ||
| 501 | +-0.949351 O b'word[:2]:30' | ||
| 502 | +-0.965721 Technique b'postag:NN' | ||
| 503 | +-0.968173 O b'-2:postag:DT' | ||
| 504 | +-0.969881 O b'word[:1]:d' | ||
| 505 | +-0.992013 O b'word[:2]:me' | ||
| 506 | +-1.005304 Gtype b'+2:lemma:cra' | ||
| 507 | +-1.016350 Supp b'+2:lemma:1' | ||
| 508 | +-1.016868 O b'-2:postag:RB' | ||
| 509 | +-1.018698 Med b'-2:postag:VBN' | ||
| 510 | +-1.049404 O b'+2:lemma:then' | ||
| 511 | +-1.070041 Supp b'+2:lemma:fructose' | ||
| 512 | +-1.100907 O b'-2:lemma:0.3' | ||
| 513 | +-1.187447 O b'+1:lemma:2' | ||
| 514 | +-1.187447 O b'+1:word:2' | ||
| 515 | +-1.201747 O b'postag:VBP' | ||
| 516 | +-1.230600 Supp b'+2:postag:CD' | ||
| 517 | +-1.246552 OD b'+2:lemma:aerobically' | ||
| 518 | +-1.286136 Supp b'+2:lemma:2' | ||
| 519 | +-1.312055 O b'word[:1]:P' | ||
| 520 | +-1.352684 OD b'+1:postag:NN' | ||
| 521 | +-1.428576 O b'-1:postag::' | ||
| 522 | +-1.785805 O b'-1:lemma::' | ||
| 523 | +-1.785805 O b'-1:word::' | ||
| 524 | +-1.853048 O b'-1:postag:VBG' | ||
| 525 | +-2.104444 O b'word[:2]:Ch' | ||
| 526 | +-2.120158 O b'-1:lemma:_' | ||
| 527 | +-2.120158 O b'-1:word:_' | ||
| 528 | + |
CRF/reports/report_Run_8_v13.txt
0 → 100644
| 1 | +********** TRAINING AND TESTING REPORT ********** | ||
| 2 | +Training file: training-data-set-70.txt | ||
| 3 | + | ||
| 4 | +best params:{'c1': 0.12475431096451621, 'c2': 0.013861677898849787} | ||
| 5 | +best CV score:0.8708258755708097 | ||
| 6 | +model size: 0.13M | ||
| 7 | + | ||
| 8 | +Flat F1: 0.7686691050567419 | ||
| 9 | + precision recall f1-score support | ||
| 10 | + | ||
| 11 | + OD 0.818 0.818 0.818 22 | ||
| 12 | + pH 1.000 1.000 1.000 8 | ||
| 13 | + Technique 1.000 0.913 0.955 23 | ||
| 14 | + Med 1.000 0.962 0.981 53 | ||
| 15 | + Temp 1.000 0.828 0.906 29 | ||
| 16 | + Vess 1.000 1.000 1.000 1 | ||
| 17 | + Agit 0.000 0.000 0.000 0 | ||
| 18 | + Phase 0.882 1.000 0.938 15 | ||
| 19 | + Air 0.556 0.362 0.439 69 | ||
| 20 | + Anti 1.000 1.000 1.000 11 | ||
| 21 | + Strain 0.000 0.000 0.000 1 | ||
| 22 | + Gtype 0.867 0.847 0.857 85 | ||
| 23 | + Substrain 0.000 0.000 0.000 0 | ||
| 24 | + Supp 0.586 0.813 0.681 134 | ||
| 25 | + Gversion 0.000 0.000 0.000 0 | ||
| 26 | + | ||
| 27 | +avg / total 0.769 0.787 0.769 451 | ||
| 28 | + | ||
| 29 | + | ||
| 30 | +Top likely transitions: | ||
| 31 | +Agit -> Agit 6.648242 | ||
| 32 | +Temp -> Temp 6.282260 | ||
| 33 | +OD -> OD 5.656317 | ||
| 34 | +Med -> Med 5.374931 | ||
| 35 | +Supp -> Supp 5.024760 | ||
| 36 | +Gversion -> Gversion 4.860700 | ||
| 37 | +Anti -> Anti 4.808761 | ||
| 38 | +Phase -> Phase 4.070172 | ||
| 39 | +Air -> Air 4.046984 | ||
| 40 | +Gtype -> Gtype 3.891102 | ||
| 41 | +O -> O 3.673937 | ||
| 42 | +Technique -> Technique 3.298287 | ||
| 43 | +pH -> pH 2.863141 | ||
| 44 | +Substrain -> Gtype 0.869714 | ||
| 45 | +O -> Technique 0.537319 | ||
| 46 | +Air -> O 0.264430 | ||
| 47 | +O -> Gtype 0.222368 | ||
| 48 | +Temp -> O 0.130509 | ||
| 49 | +Gtype -> Supp 0.079007 | ||
| 50 | +Technique -> Air 0.075090 | ||
| 51 | +Med -> O 0.071813 | ||
| 52 | +O -> Anti 0.041836 | ||
| 53 | +O -> Supp 0.033164 | ||
| 54 | +Supp -> O -0.011764 | ||
| 55 | +Phase -> O -0.027870 | ||
| 56 | +OD -> O -0.058085 | ||
| 57 | +Gversion -> O -0.096750 | ||
| 58 | +O -> Phase -0.097534 | ||
| 59 | +Air -> Supp -0.189966 | ||
| 60 | +Technique -> pH -0.218375 | ||
| 61 | +Temp -> Med -0.224152 | ||
| 62 | +O -> Med -0.332474 | ||
| 63 | +O -> OD -0.383967 | ||
| 64 | +Gtype -> Med -0.624502 | ||
| 65 | +Gtype -> Technique -0.734455 | ||
| 66 | +Technique -> O -0.940389 | ||
| 67 | +O -> Air -1.114206 | ||
| 68 | +Gtype -> O -1.304969 | ||
| 69 | +Substrain -> O -1.345412 | ||
| 70 | +Med -> Supp -2.177917 | ||
| 71 | + | ||
| 72 | + | ||
| 73 | +Top unlikely transitions: | ||
| 74 | +Agit -> Agit 6.648242 | ||
| 75 | +Temp -> Temp 6.282260 | ||
| 76 | +OD -> OD 5.656317 | ||
| 77 | +Med -> Med 5.374931 | ||
| 78 | +Supp -> Supp 5.024760 | ||
| 79 | +Gversion -> Gversion 4.860700 | ||
| 80 | +Anti -> Anti 4.808761 | ||
| 81 | +Phase -> Phase 4.070172 | ||
| 82 | +Air -> Air 4.046984 | ||
| 83 | +Gtype -> Gtype 3.891102 | ||
| 84 | +O -> O 3.673937 | ||
| 85 | +Technique -> Technique 3.298287 | ||
| 86 | +pH -> pH 2.863141 | ||
| 87 | +Substrain -> Gtype 0.869714 | ||
| 88 | +O -> Technique 0.537319 | ||
| 89 | +Air -> O 0.264430 | ||
| 90 | +O -> Gtype 0.222368 | ||
| 91 | +Temp -> O 0.130509 | ||
| 92 | +Gtype -> Supp 0.079007 | ||
| 93 | +Technique -> Air 0.075090 | ||
| 94 | +Med -> O 0.071813 | ||
| 95 | +O -> Anti 0.041836 | ||
| 96 | +O -> Supp 0.033164 | ||
| 97 | +Supp -> O -0.011764 | ||
| 98 | +Phase -> O -0.027870 | ||
| 99 | +OD -> O -0.058085 | ||
| 100 | +Gversion -> O -0.096750 | ||
| 101 | +O -> Phase -0.097534 | ||
| 102 | +Air -> Supp -0.189966 | ||
| 103 | +Technique -> pH -0.218375 | ||
| 104 | +Temp -> Med -0.224152 | ||
| 105 | +O -> Med -0.332474 | ||
| 106 | +O -> OD -0.383967 | ||
| 107 | +Gtype -> Med -0.624502 | ||
| 108 | +Gtype -> Technique -0.734455 | ||
| 109 | +Technique -> O -0.940389 | ||
| 110 | +O -> Air -1.114206 | ||
| 111 | +Gtype -> O -1.304969 | ||
| 112 | +Substrain -> O -1.345412 | ||
| 113 | +Med -> Supp -2.177917 | ||
| 114 | + | ||
| 115 | + | ||
| 116 | +Top positive: | ||
| 117 | +5.778785 Anti b'-2:lemma:antibody' | ||
| 118 | +5.099975 Technique b'lemma[:2]:Ch' | ||
| 119 | +4.743651 O b'-2:lemma:_' | ||
| 120 | +4.315336 Gtype b'lemma[:1]:\xce\xb4' | ||
| 121 | +4.248364 O b'lemma[:2]:re' | ||
| 122 | +4.215292 Air b'word:Aerobic' | ||
| 123 | +3.511204 O b'postag:CC' | ||
| 124 | +3.394617 O b'postag:IN' | ||
| 125 | +3.322867 O b'lemma:2' | ||
| 126 | +3.322867 O b'word:2' | ||
| 127 | +3.302849 O b'-2:lemma:medium' | ||
| 128 | +3.302673 Substrain b'lemma[:2]:mg' | ||
| 129 | +3.165450 Technique b'lemma[:2]:rn' | ||
| 130 | +3.016068 Med b'+2:postag:CC' | ||
| 131 | +2.985942 Air b'word:Anaerobic' | ||
| 132 | +2.966163 O b'lemma:1' | ||
| 133 | +2.966163 O b'word:1' | ||
| 134 | +2.923025 O b'lemma:3' | ||
| 135 | +2.923025 O b'word:3' | ||
| 136 | +2.877232 Phase b'-2:lemma:phase' | ||
| 137 | +2.867093 Supp b'-1:word:Cra' | ||
| 138 | +2.833973 Supp b'lemma:arginine' | ||
| 139 | +2.812849 O b'+2:lemma:\xc2\xb0c' | ||
| 140 | +2.760554 Air b'postag:RB' | ||
| 141 | +2.740030 O b'lemma[:1]:h' | ||
| 142 | +2.731812 Gtype b'-2:lemma:genotype/variation' | ||
| 143 | +2.708235 Air b'lemma[:2]:an' | ||
| 144 | +2.604774 O b'postag::' | ||
| 145 | +2.584655 Anti b'+2:lemma:antibody' | ||
| 146 | +2.582878 O b'lemma:-' | ||
| 147 | +2.582878 O b'word:-' | ||
| 148 | +2.571693 O b'word:Cra' | ||
| 149 | +2.568004 O b'lemma:_' | ||
| 150 | +2.568004 O b'lemma[:1]:_' | ||
| 151 | +2.568004 O b'word:_' | ||
| 152 | +2.567283 O b'-1:lemma:ChIP-exo' | ||
| 153 | +2.560556 O b'word:A' | ||
| 154 | +2.539743 Gtype b'word:WT' | ||
| 155 | +2.513546 O b'lemma:.' | ||
| 156 | +2.513546 O b'postag:.' | ||
| 157 | +2.513546 O b'word:.' | ||
| 158 | +2.499439 Gtype b'lemma:type' | ||
| 159 | +2.499439 Gtype b'lemma[:2]:ty' | ||
| 160 | +2.499439 Gtype b'word:type' | ||
| 161 | +2.460970 Air b'lemma:anaerobic' | ||
| 162 | +2.408658 O b'+1:postag:RB' | ||
| 163 | +2.388183 Phase b'lemma:mid-log' | ||
| 164 | +2.388183 Phase b'word:mid-log' | ||
| 165 | +2.384478 Supp b'lemma[:2]:gl' | ||
| 166 | +2.383895 O b'postag:VBN' | ||
| 167 | +2.382299 Air b'lemma[:2]:ae' | ||
| 168 | +2.358041 O b'lemma:with' | ||
| 169 | +2.358041 O b'word:with' | ||
| 170 | +2.353625 Supp b'+2:lemma:iptg' | ||
| 171 | +2.350953 Phase b'lemma[:2]:ex' | ||
| 172 | +2.322692 Technique b'word:ChIPSeq' | ||
| 173 | +2.304893 Gtype b'-2:lemma:delta' | ||
| 174 | +2.289460 O b'+2:lemma:fructose' | ||
| 175 | +2.285493 O b'+2:lemma:cra' | ||
| 176 | +2.276073 O b'lemma[:2]:ge' | ||
| 177 | +2.256719 Supp b'-1:postag:CC' | ||
| 178 | +2.250185 Air b'lemma[:1]:a' | ||
| 179 | +2.234168 Gtype b'lemma[:2]:pk' | ||
| 180 | +2.207665 O b'-1:lemma:tag' | ||
| 181 | +2.164408 Technique b'lemma:chipseq' | ||
| 182 | +2.073628 O b'+2:lemma:70' | ||
| 183 | +2.050739 Supp b'lemma:pq' | ||
| 184 | +2.050739 Supp b'lemma[:2]:pq' | ||
| 185 | +2.050739 Supp b'word:PQ' | ||
| 186 | +2.001826 Air b'+1:postag:IN' | ||
| 187 | +1.975647 O b'isLower' | ||
| 188 | +1.936376 O b'-1:word:Aerobic' | ||
| 189 | +1.920820 Gtype b'-1:lemma:\xe2\x88\x86' | ||
| 190 | +1.920820 Gtype b'-1:word:\xe2\x88\x86' | ||
| 191 | +1.908896 O b'-1:lemma:anaerobic' | ||
| 192 | +1.889420 pH b'+1:postag:CD' | ||
| 193 | +1.888509 Supp b'lemma[:1]:n' | ||
| 194 | +1.886729 O b'postag:DT' | ||
| 195 | +1.858376 Supp b'lemma:Iron' | ||
| 196 | +1.858376 Supp b'lemma[:2]:Ir' | ||
| 197 | +1.858376 Supp b'word:Iron' | ||
| 198 | +1.858376 Supp b'+1:word:Deficient' | ||
| 199 | +1.858376 Supp b'-2:lemma:Anaerobic' | ||
| 200 | +1.853608 O b'lemma:chip' | ||
| 201 | +1.838366 Gversion b'lemma:chip-seq' | ||
| 202 | +1.831815 O b'-1:word:tag' | ||
| 203 | +1.820620 Anti b'lemma[:2]:an' | ||
| 204 | +1.815550 Gtype b'lemma[:1]:w' | ||
| 205 | +1.809178 Gtype b'hGreek' | ||
| 206 | +1.792293 Gversion b'word:ChIP-Seq' | ||
| 207 | +1.775178 Gtype b'-2:postag:DT' | ||
| 208 | +1.768307 O b'+1:word:ChIP-Seq' | ||
| 209 | +1.764667 Supp b'-1:lemma:with' | ||
| 210 | +1.764667 Supp b'-1:word:with' | ||
| 211 | +1.722957 Supp b'lemma:acetate' | ||
| 212 | +1.722957 Supp b'word:acetate' | ||
| 213 | +1.713832 Technique b'-1:lemma:chip-exo' | ||
| 214 | +1.710287 Med b'isUpper' | ||
| 215 | +1.709780 O b'lemma:b' | ||
| 216 | +1.709780 O b'word:B' | ||
| 217 | +1.704621 Technique b'word:ChIP-Seq' | ||
| 218 | +1.694028 Phase b'lemma[:1]:e' | ||
| 219 | +1.689430 Gtype b'+1:lemma:type' | ||
| 220 | +1.689430 Gtype b'+1:word:type' | ||
| 221 | +1.679770 Supp b'lemma[:1]:I' | ||
| 222 | +1.670552 Supp b'+2:lemma:rifampicin' | ||
| 223 | +1.664056 O b'lemma[:1]:b' | ||
| 224 | +1.661667 Substrain b'lemma[:1]:m' | ||
| 225 | +1.647294 Gtype b'lemma:wt' | ||
| 226 | +1.647294 Gtype b'lemma[:2]:wt' | ||
| 227 | +1.634965 O b'-2:lemma:myc' | ||
| 228 | +1.622392 pH b'lemma[:2]:ph' | ||
| 229 | +1.620704 Supp b'-2:lemma:agent' | ||
| 230 | +1.618245 Technique b'lemma[:2]:ch' | ||
| 231 | +1.617020 O b'+2:postag:JJ' | ||
| 232 | +1.593807 Supp b'+1:lemma:\xc2\xb5m' | ||
| 233 | +1.593807 Supp b'+1:word:\xc2\xb5M' | ||
| 234 | +1.593155 O b'lemma:a' | ||
| 235 | +1.582387 O b'+1:postag:NNP' | ||
| 236 | +1.579370 Temp b'-1:word:sample' | ||
| 237 | +1.576150 Gtype b'+2:lemma:glucose' | ||
| 238 | +1.562990 O b'+1:lemma:pq' | ||
| 239 | +1.562990 O b'+1:word:PQ' | ||
| 240 | +1.555511 Gtype b'lemma[:2]:wi' | ||
| 241 | +1.554537 Gtype b'lemma[:1]:f' | ||
| 242 | +1.545677 Temp b'-1:lemma:sample' | ||
| 243 | +1.540501 Med b'lemma:MOPS' | ||
| 244 | +1.540501 Med b'lemma[:1]:M' | ||
| 245 | +1.540501 Med b'lemma[:2]:MO' | ||
| 246 | +1.540501 Med b'word:MOPS' | ||
| 247 | +1.522098 OD b'lemma[:1]:o' | ||
| 248 | +1.509875 Med b'lemma[:1]:m' | ||
| 249 | +1.505327 Phase b'-2:lemma:until' | ||
| 250 | +1.505027 O b'-1:lemma:lb' | ||
| 251 | +1.505027 O b'-1:word:LB' | ||
| 252 | +1.497714 Gtype b'-1:postag:VBG' | ||
| 253 | +1.492176 Agit b'+2:lemma:at' | ||
| 254 | +1.486489 O b'isNumber' | ||
| 255 | +1.464199 Gtype b'-2:lemma:affyexp' | ||
| 256 | +1.453424 Supp b'lemma[:2]:30' | ||
| 257 | +1.450691 Gversion b'lemma[:2]:00' | ||
| 258 | +1.450691 Gversion b'-2:lemma:nc' | ||
| 259 | +1.450278 Technique b'lemma:ChIP-exo' | ||
| 260 | +1.448397 O b'-1:lemma:media' | ||
| 261 | +1.448397 O b'-1:word:media' | ||
| 262 | +1.443477 Supp b'lemma[:2]:ni' | ||
| 263 | +1.440399 O b'lemma:Custom' | ||
| 264 | +1.440399 O b'lemma[:2]:Cu' | ||
| 265 | +1.440399 O b'word:Custom' | ||
| 266 | +1.429606 Supp b'-1:lemma:Cra' | ||
| 267 | +1.425430 Supp b'-2:lemma:media' | ||
| 268 | +1.418079 Med b'+2:lemma:b2' | ||
| 269 | +1.404067 O b'-1:lemma:glucose' | ||
| 270 | +1.404067 O b'-1:word:glucose' | ||
| 271 | +1.396114 Phase b'+2:lemma:o.d.' | ||
| 272 | +1.387435 Gtype b'lemma:\xe2\x88\x86' | ||
| 273 | +1.387435 Gtype b'lemma[:1]:\xe2\x88\x86' | ||
| 274 | +1.387435 Gtype b'word:\xe2\x88\x86' | ||
| 275 | +1.349810 Temp b'-2:lemma:\xcf\x8332' | ||
| 276 | +1.346540 Supp b'lemma:fructose' | ||
| 277 | +1.346540 Supp b'word:fructose' | ||
| 278 | +1.343114 Technique b'lemma[:1]:C' | ||
| 279 | +1.341281 Gversion b'-2:lemma:build' | ||
| 280 | +1.336703 O b'-2:lemma:flagtag' | ||
| 281 | +1.328773 Med b'lemma:broth' | ||
| 282 | +1.328773 Med b'-1:lemma:L' | ||
| 283 | +1.328773 Med b'lemma[:2]:br' | ||
| 284 | +1.328773 Med b'word:broth' | ||
| 285 | +1.328773 Med b'-1:word:L' | ||
| 286 | +1.325888 Supp b'+1:lemma:1' | ||
| 287 | +1.325888 Supp b'+1:word:1' | ||
| 288 | +1.321862 Anti b'+1:lemma:antibody' | ||
| 289 | +1.321862 Anti b'+1:word:antibody' | ||
| 290 | +1.316632 O b'+2:lemma:polyclonal' | ||
| 291 | +1.311992 O b'-1:lemma:0.3' | ||
| 292 | +1.311992 O b'-1:word:0.3' | ||
| 293 | +1.295781 Gtype b'lemma[:2]:de' | ||
| 294 | +1.284876 Gtype b'-2:lemma:genotype' | ||
| 295 | +1.277004 Supp b'-2:lemma:condition' | ||
| 296 | +1.273482 Supp b'-2:lemma:induce' | ||
| 297 | +1.271728 Air b'-1:postag::' | ||
| 298 | +1.268149 Phase b'lemma:stationary' | ||
| 299 | +1.268149 Phase b'word:stationary' | ||
| 300 | +1.262573 Technique b'-1:lemma:input' | ||
| 301 | +1.262573 Technique b'-1:word:Input' | ||
| 302 | +1.259324 Gversion b'-2:postag:VB' | ||
| 303 | +1.259137 Supp b'lemma[:2]:ac' | ||
| 304 | +1.259012 O b'+1:lemma:mid-log' | ||
| 305 | +1.259012 O b'+1:word:mid-log' | ||
| 306 | +1.253088 Temp b'-1:lemma:43' | ||
| 307 | +1.253088 Temp b'-1:word:43' | ||
| 308 | +1.253040 Gtype b'lemma:nsrr' | ||
| 309 | +1.253040 Gtype b'lemma[:2]:ns' | ||
| 310 | +1.253040 Gtype b'word:NsrR' | ||
| 311 | +1.237967 O b'lemma:0.4' | ||
| 312 | +1.237967 O b'word:0.4' | ||
| 313 | +1.236427 O b'-1:lemma:type' | ||
| 314 | +1.236427 O b'-1:word:type' | ||
| 315 | +1.229582 O b'lemma:ompr' | ||
| 316 | +1.229582 O b'word:OmpR' | ||
| 317 | + | ||
| 318 | + | ||
| 319 | +Top negative: | ||
| 320 | +-0.226109 O b'+1:word:+' | ||
| 321 | +-0.228043 Supp b'-1:lemma:-lrb-' | ||
| 322 | +-0.228043 Supp b'-1:word:-LRB-' | ||
| 323 | +-0.230436 O b'-1:lemma:37' | ||
| 324 | +-0.230436 O b'-1:word:37' | ||
| 325 | +-0.231705 O b'-2:lemma:rpob' | ||
| 326 | +-0.238413 Supp b'-2:lemma:treat' | ||
| 327 | +-0.244411 O b'+1:lemma:supplement' | ||
| 328 | +-0.244411 O b'+1:word:supplemented' | ||
| 329 | +-0.245251 Supp b'-1:postag:-LRB-' | ||
| 330 | +-0.247310 O b'+2:lemma:at' | ||
| 331 | +-0.248881 Supp b'-2:lemma:grow' | ||
| 332 | +-0.251177 O b'lemma[:1]:I' | ||
| 333 | +-0.254376 Supp b'+2:lemma:glucose' | ||
| 334 | +-0.259696 O b'-1:lemma:ph' | ||
| 335 | +-0.259696 O b'-1:word:pH' | ||
| 336 | +-0.264998 O b'-2:postag:-LRB-' | ||
| 337 | +-0.269895 O b'lemma[:2]:0.' | ||
| 338 | +-0.271060 O b'lemma:media' | ||
| 339 | +-0.271060 O b'word:media' | ||
| 340 | +-0.271346 O b'lemma:of' | ||
| 341 | +-0.271346 O b'lemma[:2]:of' | ||
| 342 | +-0.271346 O b'word:of' | ||
| 343 | +-0.271681 Med b'-1:postag:CD' | ||
| 344 | +-0.273156 Supp b'lemma[:1]:a' | ||
| 345 | +-0.280251 O b'lemma:glucose' | ||
| 346 | +-0.280251 O b'word:glucose' | ||
| 347 | +-0.283644 O b'+1:lemma:1m' | ||
| 348 | +-0.283644 O b'+1:word:1M' | ||
| 349 | +-0.283644 O b'-2:lemma:vol' | ||
| 350 | +-0.283702 Med b'+1:postag:NN' | ||
| 351 | +-0.284709 O b'+2:lemma:a' | ||
| 352 | +-0.285197 Anti b'+2:lemma:polyclonal' | ||
| 353 | +-0.289677 O b'lemma:30' | ||
| 354 | +-0.289677 O b'word:30' | ||
| 355 | +-0.295454 O b'-2:lemma:of' | ||
| 356 | +-0.296935 Phase b'+1:postag:NN' | ||
| 357 | +-0.298375 Phase b'-2:postag:NN' | ||
| 358 | +-0.304558 O b'+1:lemma:until' | ||
| 359 | +-0.304558 O b'+1:word:until' | ||
| 360 | +-0.306703 O b'-1:lemma:30' | ||
| 361 | +-0.306703 O b'-1:word:30' | ||
| 362 | +-0.313912 Supp b'+2:postag:NNP' | ||
| 363 | +-0.316964 O b'+1:lemma:mm' | ||
| 364 | +-0.316964 O b'+1:word:mM' | ||
| 365 | +-0.318525 O b'lemma:0.3' | ||
| 366 | +-0.318525 O b'word:0.3' | ||
| 367 | +-0.320042 Supp b'+1:lemma:-lrb-' | ||
| 368 | +-0.320042 Supp b'+1:word:-LRB-' | ||
| 369 | +-0.320535 Gtype b'-2:postag:CD' | ||
| 370 | +-0.321989 O b'-2:lemma:dpd' | ||
| 371 | +-0.322258 O b'lemma:2h' | ||
| 372 | +-0.322258 O b'-1:lemma:additional' | ||
| 373 | +-0.322258 O b'lemma[:2]:2h' | ||
| 374 | +-0.322258 O b'word:2h' | ||
| 375 | +-0.322258 O b'-1:word:additional' | ||
| 376 | +-0.322790 O b'-1:lemma:final' | ||
| 377 | +-0.322790 O b'-1:word:final' | ||
| 378 | +-0.324434 Air b'+2:lemma:95' | ||
| 379 | +-0.331328 O b'-2:lemma:anaerobically' | ||
| 380 | +-0.334146 O b'+1:lemma:g/l' | ||
| 381 | +-0.334146 O b'+1:word:g/L' | ||
| 382 | +-0.335082 Supp b'+1:postag:-LRB-' | ||
| 383 | +-0.338290 O b'-2:lemma:fresh' | ||
| 384 | +-0.339212 O b'+2:lemma:250' | ||
| 385 | +-0.341268 O b'-2:postag::' | ||
| 386 | +-0.342136 Gtype b'isNumber' | ||
| 387 | +-0.347416 Temp b'isLower' | ||
| 388 | +-0.350883 O b'-1:lemma:nsrr' | ||
| 389 | +-0.350883 O b'-1:word:NsrR' | ||
| 390 | +-0.354035 O b'lemma[:2]:ph' | ||
| 391 | +-0.354572 O b'+2:lemma:10' | ||
| 392 | +-0.357789 O b'-1:postag:IN' | ||
| 393 | +-0.359009 O b'lemma[:2]:gl' | ||
| 394 | +-0.359220 Anti b'+1:lemma:anti-fur' | ||
| 395 | +-0.359220 Anti b'+1:word:anti-Fur' | ||
| 396 | +-0.360276 O b'lemma[:1]:0' | ||
| 397 | +-0.369156 Gtype b'postag:VBG' | ||
| 398 | +-0.370735 O b'lemma[:1]:p' | ||
| 399 | +-0.372427 Supp b'hGreek' | ||
| 400 | +-0.376173 O b'-1:lemma:co2' | ||
| 401 | +-0.376173 O b'-1:word:CO2' | ||
| 402 | +-0.379578 Air b'-1:postag:JJ' | ||
| 403 | +-0.395494 O b'-2:lemma:pahse' | ||
| 404 | +-0.402449 O b'-1:lemma:IP' | ||
| 405 | +-0.402449 O b'-1:word:IP' | ||
| 406 | +-0.408327 O b'-1:lemma:dissolve' | ||
| 407 | +-0.408327 O b'+1:lemma:methanol' | ||
| 408 | +-0.408327 O b'-1:word:dissolved' | ||
| 409 | +-0.408327 O b'+1:word:methanol' | ||
| 410 | +-0.412183 Supp b'-1:postag:NNP' | ||
| 411 | +-0.420616 O b'-1:lemma:mm' | ||
| 412 | +-0.420616 O b'-1:word:mM' | ||
| 413 | +-0.429595 Supp b'-2:postag:JJ' | ||
| 414 | +-0.430195 O b'-1:lemma:grow' | ||
| 415 | +-0.435625 Med b'-1:postag:NN' | ||
| 416 | +-0.448459 O b'lemma[:1]:k' | ||
| 417 | +-0.448610 O b'-2:lemma:supplement' | ||
| 418 | +-0.466479 O b'-1:lemma:1' | ||
| 419 | +-0.466479 O b'-1:word:1' | ||
| 420 | +-0.469602 O b'-2:lemma:until' | ||
| 421 | +-0.479898 O b'lemma[:1]:d' | ||
| 422 | +-0.497095 OD b'isUpper' | ||
| 423 | +-0.504384 O b'+2:lemma:-rrb-' | ||
| 424 | +-0.509042 O b'+2:lemma:.' | ||
| 425 | +-0.509042 O b'+2:postag:.' | ||
| 426 | +-0.509708 O b'lemma[:1]:L' | ||
| 427 | +-0.515769 Supp b'+1:lemma:,' | ||
| 428 | +-0.515769 Supp b'+1:postag:,' | ||
| 429 | +-0.515769 Supp b'+1:word:,' | ||
| 430 | +-0.523080 O b'+2:lemma:mid-log' | ||
| 431 | +-0.538428 O b'+2:lemma:tag' | ||
| 432 | +-0.544421 O b'+1:lemma:at' | ||
| 433 | +-0.544421 O b'+1:word:at' | ||
| 434 | +-0.547856 Air b'isLower' | ||
| 435 | +-0.550244 Supp b'lemma[:1]:s' | ||
| 436 | +-0.559046 O b'+2:postag:-RRB-' | ||
| 437 | +-0.569716 O b'lemma[:1]:n' | ||
| 438 | +-0.570198 Gtype b'-2:lemma:\xe2\x88\x86' | ||
| 439 | +-0.579000 Gtype b'lemma[:1]:a' | ||
| 440 | +-0.583274 Anti b'+2:postag:JJ' | ||
| 441 | +-0.584013 O b'+2:lemma:+' | ||
| 442 | +-0.587165 O b'-2:postag:DT' | ||
| 443 | +-0.588343 Anti b'isUpper' | ||
| 444 | +-0.593932 Temp b'postag:NN' | ||
| 445 | +-0.629429 Technique b'postag:NN' | ||
| 446 | +-0.641599 O b'+1:postag:VBG' | ||
| 447 | +-0.642253 O b'-2:postag:RB' | ||
| 448 | +-0.645675 O b'-2:lemma:glucose' | ||
| 449 | +-0.646300 O b'-2:lemma:aerobically' | ||
| 450 | +-0.655586 Phase b'hUpper' | ||
| 451 | +-0.655586 Phase b'hLower' | ||
| 452 | +-0.667822 Supp b'symb' | ||
| 453 | +-0.684950 O b'lemma:mid-log' | ||
| 454 | +-0.684950 O b'word:mid-log' | ||
| 455 | +-0.696963 Air b'postag:CD' | ||
| 456 | +-0.697392 Gtype b'lemma[:1]:c' | ||
| 457 | +-0.708226 O b'+1:postag:IN' | ||
| 458 | +-0.709735 Agit b'hUpper' | ||
| 459 | +-0.709735 Agit b'hLower' | ||
| 460 | +-0.719991 Supp b'+2:postag:CD' | ||
| 461 | +-0.734493 O b'postag:VBP' | ||
| 462 | +-0.737825 O b'+1:lemma:2.0' | ||
| 463 | +-0.737825 O b'+1:word:2.0' | ||
| 464 | +-0.739276 O b'-2:lemma:phase' | ||
| 465 | +-0.744487 O b'-1:lemma:vol' | ||
| 466 | +-0.744487 O b'-1:word:vol' | ||
| 467 | +-0.744487 O b'-2:lemma:1/100' | ||
| 468 | +-0.744487 O b'+2:lemma:1m' | ||
| 469 | +-0.745820 O b'-1:lemma:2' | ||
| 470 | +-0.745820 O b'-1:word:2' | ||
| 471 | +-0.779133 O b'lemma[:2]:me' | ||
| 472 | +-0.791240 Med b'-2:postag:VBN' | ||
| 473 | +-0.811108 pH b'isLower' | ||
| 474 | +-0.815019 O b'lemma[:2]:ri' | ||
| 475 | +-0.822304 O b'lemma[:2]:ae' | ||
| 476 | +-0.845031 Air b'symb' | ||
| 477 | +-0.852088 O b'-1:postag::' | ||
| 478 | +-0.858500 O b'lemma:rifampicin' | ||
| 479 | +-0.858500 O b'word:rifampicin' | ||
| 480 | +-0.868974 O b'+1:lemma:in' | ||
| 481 | +-0.868974 O b'+1:word:in' | ||
| 482 | +-0.877702 O b'-2:lemma::' | ||
| 483 | +-0.910576 Agit b'symb' | ||
| 484 | +-0.911173 Med b'+2:postag:VBN' | ||
| 485 | +-0.967024 O b'+2:lemma:rifampicin' | ||
| 486 | +-0.974578 Gtype b'lemma[:1]:r' | ||
| 487 | +-0.982189 OD b'+1:postag:NN' | ||
| 488 | +-0.989258 Supp b'+2:lemma:fructose' | ||
| 489 | +-0.999898 Gtype b'isUpper' | ||
| 490 | +-1.007082 Supp b'postag:JJ' | ||
| 491 | +-1.027901 O b'+1:lemma:1' | ||
| 492 | +-1.027901 O b'+1:word:1' | ||
| 493 | +-1.080125 O b'-1:lemma:sample' | ||
| 494 | +-1.081087 Med b'symb' | ||
| 495 | +-1.103669 Anti b'postag:NNP' | ||
| 496 | +-1.119102 Supp b'lemma[:1]:c' | ||
| 497 | +-1.161510 Gtype b'+2:lemma:cra' | ||
| 498 | +-1.168776 O b'postag:RB' | ||
| 499 | +-1.179031 Gversion b'isLower' | ||
| 500 | +-1.264564 Air b'postag:NN' | ||
| 501 | +-1.303121 Phase b'-1:postag:JJ' | ||
| 502 | +-1.313129 O b'-2:lemma:0.3' | ||
| 503 | +-1.354086 O b'+2:lemma:then' | ||
| 504 | +-1.362965 O b'-2:lemma:rifampicin' | ||
| 505 | +-1.372070 O b'lemma[:2]:30' | ||
| 506 | +-1.477845 O b'+1:lemma:2' | ||
| 507 | +-1.477845 O b'+1:word:2' | ||
| 508 | +-1.613769 Med b'-2:lemma:grow' | ||
| 509 | +-1.790036 O b'-1:postag:VBG' | ||
| 510 | +-1.878256 O b'-2:lemma:media' | ||
| 511 | +-1.903402 Supp b'+2:lemma:1' | ||
| 512 | +-1.998576 Phase b'postag:JJ' | ||
| 513 | +-2.018162 Supp b'+2:lemma:2' | ||
| 514 | +-2.234797 OD b'+2:lemma:aerobically' | ||
| 515 | +-2.297320 O b'-1:lemma::' | ||
| 516 | +-2.297320 O b'-1:word::' | ||
| 517 | +-2.625976 O b'lemma[:2]:fl' | ||
| 518 | +-2.846763 O b'-1:lemma:_' | ||
| 519 | +-2.846763 O b'-1:word:_' | ||
| 520 | + |
-
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