Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

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Estefani Gaytan Nunez
733b1772 2 parents 4c4c1cd9 3eb40ae0

Merge branch 'master' of http://pakal.ccg.unam.mx/cmendezc/automatic-extraction-growth-conditions

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Showing 5 changed files with 214 additions and 4 deletions
...@@ -7,6 +7,7 @@ library(ggplot2) ...@@ -7,6 +7,7 @@ library(ggplot2)
7 ######### BEST MODELS ########## 7 ######### BEST MODELS ##########
8 8
9 # Run1 9 # Run1
10 +# Todas las condiciones
10 dfa <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=15), 11 dfa <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=15),
11 Strategy=rep(c( 12 Strategy=rep(c(
12 "Agit", 13 "Agit",
...@@ -72,15 +73,142 @@ dfa <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=15), ...@@ -72,15 +73,142 @@ dfa <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=15),
72 1, 73 1,
73 1 74 1
74 )) 75 ))
75 -head(dfa)
76 76
77 -pa<-ggplot(dfa, aes(x=Strategy, y=Score, group=Measure)) + 77 +# Solo condiciones con F1-score > 0
78 +# Run 1
79 +df <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=11),
80 + Strategy=rep(c(
81 + "OD",
82 + "Anti",
83 + "Supp",
84 + "Air",
85 + "Gtype",
86 + "Med",
87 + "Temp",
88 + "Technique",
89 + "Phase",
90 + "pH",
91 + "Strain"
92 + ),3),
93 + Score=c(
94 + 1,
95 + 1,
96 + 0.883,
97 + 0.92,
98 + 0.905,
99 + 0.852,
100 + 0.818,
101 + 0.88,
102 + 1,
103 + 1,
104 + 1,
105 + 0.405,
106 + 0.444,
107 + 0.669,
108 + 0.742,
109 + 0.811,
110 + 0.912,
111 + 1,
112 + 1,
113 + 0.947,
114 + 1,
115 + 1,
116 + 0.577,
117 + 0.615,
118 + 0.762,
119 + 0.821,
120 + 0.856,
121 + 0.881,
122 + 0.9,
123 + 0.936,
124 + 0.973,
125 + 1,
126 + 1
127 + ))
128 +
129 +head(df)
130 +
131 +pa<-ggplot(df, aes(x=Strategy, y=Score, group=Measure)) +
132 + geom_line(aes(color=Measure))+
133 + geom_point(aes(color=Measure))+
134 + scale_color_manual(values=c("#999999", "#E69F00", "#56B4E9"))+
135 + #scale_color_manual(values=c("#e6194b", "#3cb44b", "#0082c8"))+
136 + #geom_text(aes(label = Score))+
137 + labs(title="Scores by condition (Best model, Run1)",x="Condition", y = "Score")+
138 + theme(
139 + legend.position="top",
140 + # Centrar título: plot.title = element_text(hjust = 0.5),
141 + axis.line = element_line(colour = "gray"),
142 + panel.background = element_blank(),
143 + panel.grid.major = element_blank(),
144 + panel.grid.minor = element_blank(),
145 + panel.border = element_blank()
146 + )
147 +pa
148 +
149 +ggsave(".png")
150 +
151 +# Solo condiciones con F1-score > 0
152 +# Run 7
153 +df <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=11),
154 + Strategy=rep(c(
155 + "Anti",
156 + "OD",
157 + "Supp",
158 + "Air",
159 + "Gtype",
160 + "Temp",
161 + "Med",
162 + "Technique",
163 + "Phase",
164 + "pH",
165 + "Strain"
166 + ),3),
167 + Score=c(
168 + 0.571,
169 + 1,
170 + 0.886,
171 + 0.939,
172 + 0.876,
173 + 0.818,
174 + 0.897,
175 + 0.952,
176 + 1,
177 + 1,
178 + 1,
179 + 0.444,
180 + 0.405,
181 + 0.684,
182 + 0.742,
183 + 0.802,
184 + 1,
185 + 0.912,
186 + 0.909,
187 + 0.947,
188 + 1,
189 + 1,
190 + 0.5,
191 + 0.577,
192 + 0.772,
193 + 0.829,
194 + 0.837,
195 + 0.9,
196 + 0.904,
197 + 0.93,
198 + 0.973,
199 + 1,
200 + 1
201 + ))
202 +
203 +head(df)
204 +
205 +pa<-ggplot(df, aes(x=Strategy, y=Score, group=Measure)) +
78 geom_line(aes(color=Measure))+ 206 geom_line(aes(color=Measure))+
79 geom_point(aes(color=Measure))+ 207 geom_point(aes(color=Measure))+
80 scale_color_manual(values=c("#999999", "#E69F00", "#56B4E9"))+ 208 scale_color_manual(values=c("#999999", "#E69F00", "#56B4E9"))+
81 #scale_color_manual(values=c("#e6194b", "#3cb44b", "#0082c8"))+ 209 #scale_color_manual(values=c("#e6194b", "#3cb44b", "#0082c8"))+
82 - geom_text(aes(label = Score))+ 210 + #geom_text(aes(label = Score))+
83 - labs(title="Prediction of the best model (Run1)",x="Conditions", y = "Score")+ 211 + labs(title="Scores by condition (Best model, Run7)",x="Condition", y = "Score")+
84 theme( 212 theme(
85 legend.position="top", 213 legend.position="top",
86 # Centrar título: plot.title = element_text(hjust = 0.5), 214 # Centrar título: plot.title = element_text(hjust = 0.5),
......
1 +# Based on http://www.sthda.com/english/wiki/ggplot2-line-plot-quick-start-guide-r-software-and-data-visualization
2 +
3 +library(ggplot2)
4 +#library(ggpubr)
5 +#library(cowplot)
6 +
7 +######### BEST MODEL ##########
8 +
9 +# Solo condiciones con F1-score > 0
10 +# Run 6 (report_Run6_v11.txt)
11 +df <- data.frame(Measure=rep(c("Precision", "Recall", "F1-score"), each=11),
12 + Strategy=rep(c(
13 + "Air",
14 + "Anti",
15 + "Gtype",
16 + "Med",
17 + "OD",
18 + "pH",
19 + "Phase",
20 + "Supp",
21 + "Technique",
22 + "Temp",
23 + "Vess"
24 + ),3),
25 + Score=c(
26 + 0.565,
27 + 1,
28 + 0.889,
29 + 1,
30 + 1,
31 + 1,
32 + 0.882,
33 + 0.811,
34 + 1,
35 + 0.923,
36 + 1,
37 + 0.377,
38 + 1,
39 + 0.847,
40 + 0.943,
41 + 0.818,
42 + 1,
43 + 1,
44 + 0.799,
45 + 0.913,
46 + 0.828,
47 + 1,
48 + 0.452,
49 + 1,
50 + 0.867,
51 + 0.971,
52 + 0.9,
53 + 1,
54 + 0.938,
55 + 0.805,
56 + 0.955,
57 + 0.873,
58 + 1
59 + ))
60 +
61 +head(df)
62 +
63 +pa<-ggplot(df, aes(x=Strategy, y=Score, group=Measure)) +
64 + geom_line(aes(color=Measure))+
65 + geom_point(aes(color=Measure))+
66 + scale_color_manual(values=c("#999999", "#E69F00", "#56B4E9"))+
67 + #scale_color_manual(values=c("#e6194b", "#3cb44b", "#0082c8"))+
68 + #geom_text(aes(label = Score))+
69 + labs(title="Scores by condition (Best model, Run1)",x="Condition", y = "Score")+
70 + theme(
71 + legend.position="top",
72 + # Centrar título: plot.title = element_text(hjust = 0.5),
73 + axis.line = element_line(colour = "gray"),
74 + panel.background = element_blank(),
75 + panel.grid.major = element_blank(),
76 + panel.grid.minor = element_blank(),
77 + panel.border = element_blank()
78 + )
79 +pa
80 +
81 +ggsave(".png")
82 +
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