********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt

best params:{'c1': 0.19432865325703363, 'c2': 0.003040980714530674}
best CV score:0.8693465985146905
model size: 0.10M

Flat F1: 0.7784025356677224
             precision    recall  f1-score   support

         OD      1.000     0.818     0.900        22
         pH      1.000     1.000     1.000         8
  Technique      1.000     0.913     0.955        23
        Med      1.000     0.943     0.971        53
       Temp      0.923     0.828     0.873        29
       Vess      1.000     1.000     1.000         1
       Agit      0.000     0.000     0.000         0
      Phase      0.875     0.933     0.903        15
        Air      0.556     0.362     0.439        69
       Anti      1.000     1.000     1.000        11
     Strain      0.000     0.000     0.000         1
      Gtype      0.895     0.906     0.901        85
  Substrain      0.000     0.000     0.000         0
       Supp      0.600     0.806     0.688       134
   Gversion      0.000     0.000     0.000         0

avg / total      0.782     0.792     0.778       451


Top likely transitions:
Temp   -> Temp    6.494919
OD     -> OD      6.471344
Agit   -> Agit    6.119106
Med    -> Med     5.417640
Anti   -> Anti    5.342032
Supp   -> Supp    5.069696
Air    -> Air     5.063209
Gversion -> Gversion 4.772781
Technique -> Technique 4.679875
Gtype  -> Gtype   4.566983
Phase  -> Phase   4.367362
O      -> O       4.012480
pH     -> pH      3.171066
Substrain -> Gtype   2.054037
Gtype  -> Supp    1.338135
O      -> Technique 1.254842
O      -> Gtype   0.899456
Technique -> Air     0.733598
O      -> Supp    0.690130
Gtype  -> Air     0.439886
Air    -> O       0.399521
Med    -> O       0.355588
Temp   -> O       0.164789
O      -> Phase   0.092964
O      -> OD      0.041552
Supp   -> O       0.021371
O      -> Anti    0.011391
Supp   -> Med     -0.000215
Phase  -> OD      -0.080887
Technique -> Gtype   -0.187130
Air    -> Supp    -0.201431
O      -> Air     -0.303507
Technique -> O       -0.393310
Gtype  -> O       -0.823321
Substrain -> O       -0.979191
Med    -> Supp    -2.040767


Top unlikely transitions:
Temp   -> Temp    6.494919
OD     -> OD      6.471344
Agit   -> Agit    6.119106
Med    -> Med     5.417640
Anti   -> Anti    5.342032
Supp   -> Supp    5.069696
Air    -> Air     5.063209
Gversion -> Gversion 4.772781
Technique -> Technique 4.679875
Gtype  -> Gtype   4.566983
Phase  -> Phase   4.367362
O      -> O       4.012480
pH     -> pH      3.171066
Substrain -> Gtype   2.054037
Gtype  -> Supp    1.338135
O      -> Technique 1.254842
O      -> Gtype   0.899456
Technique -> Air     0.733598
O      -> Supp    0.690130
Gtype  -> Air     0.439886
Air    -> O       0.399521
Med    -> O       0.355588
Temp   -> O       0.164789
O      -> Phase   0.092964
O      -> OD      0.041552
Supp   -> O       0.021371
O      -> Anti    0.011391
Supp   -> Med     -0.000215
Phase  -> OD      -0.080887
Technique -> Gtype   -0.187130
Air    -> Supp    -0.201431
O      -> Air     -0.303507
Technique -> O       -0.393310
Gtype  -> O       -0.823321
Substrain -> O       -0.979191
Med    -> Supp    -2.040767


Top positive:
8.498661 Air      b'word:Aerobic'
7.453902 O        b'-1:lemma:ChIP-exo'
6.772658 Anti     b'-2:lemma:antibody'
6.165081 Air      b'lemma:anaerobic'
6.117950 O        b'-2:lemma:flagtag'
5.590845 O        b'-2:lemma:_'
5.177165 Gtype    b'lemma:wild-type'
4.971807 O        b'word:Cra'
4.836191 Technique b'word:ChIP-Seq'
4.497459 O        b'+2:lemma:\xc2\xb0c'
4.382845 Air      b'word:Anaerobic'
4.352125 Supp     b'-1:word:Cra'
4.336687 Technique b'lemma:rna-seq'
4.283630 Technique b'lemma:ChIP-exo'
4.269702 Supp     b'lemma:nh4cl'
4.218273 Gtype    b'lemma:type'
4.218273 Gtype    b'word:type'
3.961606 Phase    b'-2:lemma:phase'
3.949218 Gtype    b'-2:lemma:affyexp'
3.771576 O        b'postag:IN'
3.727619 Technique b'word:ChIPSeq'
3.635085 Air      b'postag:RB'
3.622942 Gtype    b'-2:lemma:genotype/variation'
3.587121 O        b'-2:lemma:medium'
3.544455 O        b'lemma:_'
3.544455 O        b'word:_'
3.459688 Med      b'lemma:MOPS'
3.459688 Med      b'word:MOPS'
3.426079 Gtype    b'-2:lemma:delta'
3.413198 O        b'lemma:2'
3.413198 O        b'word:2'
3.403759 O        b'lemma:3'
3.403759 O        b'word:3'
3.349742 Technique b'word:ChIP-exo'
3.309028 Gtype    b'word:WT'
3.276517 O        b'lemma:1'
3.276517 O        b'word:1'
3.197253 Supp     b'lemma:arginine'
3.055830 Supp     b'lemma:pq'
3.055830 Supp     b'word:PQ'
3.028461 O        b'lemma:.'
3.028461 O        b'postag:.'
3.028461 O        b'word:.'
3.006895 O        b'postag:CC'
3.001330 Anti     b'+2:lemma:antibody'
2.880709 Gtype    b'-2:lemma:genotype'
2.876573 Gversion b'-2:lemma:nc'
2.875941 O        b'lemma:-'
2.875941 O        b'word:-'
2.850665 Phase    b'lemma:mid-log'
2.850665 Phase    b'word:mid-log'
2.801983 O        b'-1:word:Aerobic'
2.799528 Supp     b'lemma:Iron'
2.799528 Supp     b'word:Iron'
2.799528 Supp     b'+1:word:Deficient'
2.799528 Supp     b'-2:lemma:Anaerobic'
2.786563 Supp     b'+2:lemma:iptg'
2.718821 O        b'+1:word:ChIP-Seq'
2.713296 O        b'lemma:chip'
2.703351 Strain   b'+1:lemma:substr'
2.703351 Strain   b'+1:word:substr'
2.703351 Strain   b'-2:lemma:str'
2.679277 O        b'postag:VBN'
2.614364 O        b'-2:lemma:~'
2.597408 O        b'lemma:rpob'
2.597408 O        b'word:RpoB'
2.536698 Gtype    b'-1:lemma:\xe2\x88\x86'
2.536698 Gtype    b'-1:word:\xe2\x88\x86'
2.524686 Substrain b'-2:lemma:substr'
2.524477 O        b'lemma:b'
2.524477 O        b'word:B'
2.516755 Gtype    b'-2:postag:DT'
2.488117 Gtype    b'lemma:\xce\xb4cra'
2.483993 Gtype    b'lemma:wt'
2.482868 Gtype    b'word:\xce\x94cra'
2.435143 O        b'word:A'
2.415059 O        b'lemma:a'
2.412868 O        b'postag::'
2.406725 Supp     b'-2:lemma:media'
2.390251 Gtype    b'+1:lemma:type'
2.390251 Gtype    b'+1:word:type'
2.339888 O        b'+1:postag:RB'
2.333432 Supp     b'lemma:no3'
2.333432 Supp     b'word:NO3'
2.317239 pH       b'+1:postag:CD'
2.276706 O        b'+2:lemma:70'
2.257460 Med      b'+2:postag:CC'
2.243390 O        b'+2:postag:JJ'
2.197419 Gtype    b'lemma:\xe2\x88\x86'
2.197419 Gtype    b'word:\xe2\x88\x86'
2.180922 Supp     b'-1:postag:CC'
2.172831 Gtype    b'lemma:\xce\xb4fur'
2.172831 Gtype    b'word:\xce\x94fur'
2.143238 Supp     b'+1:lemma:\xc2\xb5m'
2.143238 Supp     b'+1:word:\xc2\xb5M'
2.142465 Supp     b'lemma:nacl'
2.142465 Supp     b'word:NaCl'
2.120502 Supp     b'-1:lemma:with'
2.120502 Supp     b'-1:word:with'
2.074609 O        b'+2:lemma:fructose'
2.072246 Technique b'lemma:rnaseq'
2.072246 Technique b'word:RNASeq'
2.017366 O        b'+2:lemma:cra'
1.976126 O        b'+1:postag:NNP'
1.970655 Supp     b'-2:lemma:condition'
1.952514 Phase    b'-2:lemma:until'
1.949624 Supp     b'lemma:nitrate'
1.949624 Supp     b'word:nitrate'
1.946689 O        b'-1:word:tag'
1.943850 Substrain b'lemma:mg1655'
1.943850 Substrain b'word:MG1655'
1.927111 Gtype    b'lemma:\xce\xb4soxr'
1.927111 Gtype    b'word:\xce\x94soxR'
1.921168 O        b'-1:lemma:media'
1.921168 O        b'-1:word:media'
1.878986 Supp     b'lemma:acetate'
1.878986 Supp     b'word:acetate'
1.874636 Supp     b'lemma:glucose'
1.874636 Supp     b'word:glucose'
1.872148 O        b'lemma:culture'
1.839801 Gtype    b'lemma:pk4854'
1.839801 Gtype    b'word:PK4854'
1.832298 Gtype    b'lemma:flag-tag'
1.832298 Gtype    b'-1:lemma:c-terminal'
1.832298 Gtype    b'word:Flag-tag'
1.832298 Gtype    b'-1:word:C-terminal'
1.820296 O        b'lemma:harbor'
1.820296 O        b'word:harboring'
1.815309 O        b'-1:lemma:tag'
1.807546 O        b'lemma:with'
1.807546 O        b'word:with'
1.777512 Gversion b'lemma:chip-seq'
1.769268 O        b'isLower'
1.765598 O        b'-2:lemma:min'
1.763690 Gversion b'-2:lemma:build'
1.761248 Gtype    b'+2:lemma:glucose'
1.755584 O        b'postag:VBD'
1.743507 O        b'lemma:Custom'
1.743507 O        b'word:Custom'
1.740985 Med      b'+2:lemma:b2'
1.731020 Agit     b'+2:lemma:at'
1.725553 O        b'+1:lemma:arca-8myc'
1.725553 O        b'+1:word:ArcA-8myc'
1.720146 O        b'lemma::'
1.720146 O        b'word::'
1.712129 Gversion b'lemma:nc'
1.712129 Gversion b'word:NC'
1.707341 O        b'-1:lemma:anaerobic'
1.686115 O        b'+1:lemma:pq'
1.686115 O        b'+1:word:PQ'
1.678834 O        b'lemma:ompr'
1.678834 O        b'word:OmpR'
1.675572 Gtype    b'-2:postag::'
1.672750 Med      b'lemma:lb'
1.672750 Med      b'word:LB'
1.671736 Gtype    b'+1:lemma:ph5'
1.671736 Gtype    b'+1:word:pH5'
1.671736 Gtype    b'+2:lemma:.5'
1.670759 Air      b'lemma:aerobically'
1.670759 Air      b'word:aerobically'
1.647866 Temp     b'-2:lemma:\xcf\x8332'
1.640244 Supp     b'lemma:rifampicin'
1.640244 Supp     b'word:rifampicin'
1.626253 Gversion b'word:ChIP-Seq'
1.618940 O        b'-2:lemma:myc'
1.612483 Temp     b'+2:postag:DT'
1.611153 Technique b'lemma:chipseq'
1.599912 Supp     b'-2:lemma:agent'
1.592000 Temp     b'isNumber'
1.587160 Agit     b'lemma:rpm'
1.587160 Agit     b'word:rpm'
1.581472 O        b'-2:lemma:with'
1.569842 Temp     b'-1:lemma:\xcf\x8332'
1.569842 Temp     b'-1:word:\xcf\x8332'
1.563059 Gversion b'-2:postag:VB'
1.527295 O        b'postag:DT'
1.515816 O        b'-2:lemma:\xe2\x88\x86'
1.507350 Vess     b'lemma:flask'
1.507350 Vess     b'-1:lemma:warm'
1.507350 Vess     b'word:flask'
1.507350 Vess     b'-1:word:warmed'
1.507350 Vess     b'-2:lemma:pre'
1.507350 Vess     b'+2:lemma:43'
1.506594 Gtype    b'lemma:nsrr'
1.506594 Gtype    b'word:NsrR'
1.504503 Gtype    b'lemma:\xce\xb4ompr'
1.504503 Gtype    b'word:\xce\x94ompR'
1.503447 O        b'+2:lemma:polyclonal'
1.495379 O        b'-1:lemma:lb'
1.495379 O        b'-1:word:LB'
1.491679 Gtype    b'-1:postag:VBG'
1.487841 Med      b'isUpper'
1.483957 Gtype    b'lemma:dfnr'
1.483957 Gtype    b'word:dFNR'
1.474477 Technique b'+2:lemma:ph5'
1.473390 Gversion b'+2:lemma:000913'
1.470703 O        b'+1:lemma:mid-log'
1.470703 O        b'+1:word:mid-log'
1.470599 Med      b'+2:lemma:+'
1.469928 Supp     b'-2:lemma:for'


Top negative:
-0.126187 Supp     b'-2:lemma:.'
-0.126187 Supp     b'-2:postag:.'
-0.127621 Med      b'+1:postag:IN'
-0.130732 O        b'-2:lemma:dpd'
-0.132134 Technique b'postag:NN'
-0.132995 Air      b'-2:postag:RB'
-0.133944 O        b'-2:lemma:mm'
-0.135455 O        b'-2:lemma:pahse'
-0.136661 O        b'lemma:37'
-0.136661 O        b'word:37'
-0.140067 OD       b'+2:postag:NN'
-0.140101 Supp     b'+2:lemma:.'
-0.140101 Supp     b'+2:postag:.'
-0.140302 O        b'-2:lemma:-lrb-'
-0.141434 Supp     b'-1:postag:-LRB-'
-0.141915 Air      b'+1:postag:JJ'
-0.144090 O        b'-1:lemma:fresh'
-0.144090 O        b'-1:word:fresh'
-0.153079 Supp     b'+2:postag:NNP'
-0.166309 Supp     b'+1:postag:VBN'
-0.166863 O        b'+1:postag:-LRB-'
-0.175325 Phase    b'-2:postag:NN'
-0.178557 O        b'+1:lemma:mm'
-0.178557 O        b'+1:word:mM'
-0.179047 Supp     b'lemma:10'
-0.179047 Supp     b'word:10'
-0.181748 O        b'-2:lemma:minimal'
-0.181863 O        b'-1:word:the'
-0.183178 O        b'-1:lemma:of'
-0.183178 O        b'-1:word:of'
-0.189370 Air      b'+2:postag:CC'
-0.193112 O        b'lemma:wt'
-0.194128 O        b'-1:lemma:the'
-0.194149 O        b'-1:lemma:at'
-0.202859 Temp     b'isLower'
-0.206499 O        b'+2:postag:RB'
-0.211728 O        b'-2:lemma:media'
-0.217752 Supp     b'-2:lemma:treat'
-0.226935 Med      b'+1:postag:NN'
-0.228587 Phase    b'+1:postag:NN'
-0.230504 O        b'-1:postag:DT'
-0.231712 Temp     b'-2:postag:NN'
-0.235534 Air      b'-2:postag:CC'
-0.237756 Air      b'-2:postag:-LRB-'
-0.239368 O        b'-2:postag:-LRB-'
-0.243864 O        b'+1:lemma:g/l'
-0.243864 O        b'+1:word:g/L'
-0.244939 O        b'lemma:aerobically'
-0.244939 O        b'word:aerobically'
-0.253096 O        b'-2:lemma:fresh'
-0.263628 O        b'-1:postag:IN'
-0.268765 Supp     b'+1:lemma:-lrb-'
-0.268765 Supp     b'+1:word:-LRB-'
-0.269581 OD       b'isUpper'
-0.271938 O        b'+1:lemma:supplement'
-0.271938 O        b'+1:word:supplemented'
-0.279427 Anti     b'+2:postag:JJ'
-0.282509 Air      b'-2:lemma:-lrb-'
-0.282587 Supp     b'+1:lemma:,'
-0.282587 Supp     b'+1:postag:,'
-0.282587 Supp     b'+1:word:,'
-0.290826 Supp     b'+1:postag:-LRB-'
-0.298496 O        b'-2:lemma:supplement'
-0.301952 O        b'-2:lemma:at'
-0.302829 O        b'+2:lemma:add'
-0.310606 O        b'+1:lemma:.'
-0.310606 O        b'+1:postag:.'
-0.310606 O        b'+1:word:.'
-0.313003 O        b'-1:lemma:co2'
-0.313003 O        b'-1:word:CO2'
-0.317690 O        b'-1:lemma:dissolve'
-0.317690 O        b'+1:lemma:methanol'
-0.317690 O        b'-1:word:dissolved'
-0.317690 O        b'+1:word:methanol'
-0.326174 O        b'-1:lemma:minimal'
-0.326174 O        b'-1:word:minimal'
-0.326216 O        b'-1:lemma:IP'
-0.326216 O        b'-1:word:IP'
-0.326756 Med      b'-1:postag:NN'
-0.330968 O        b'-1:lemma:2'
-0.330968 O        b'-1:word:2'
-0.331123 Supp     b'isNumber'
-0.331144 O        b'+2:lemma:fnr'
-0.342326 Med      b'+2:postag:VBN'
-0.348597 O        b'-2:lemma:glucose'
-0.349154 O        b'-2:lemma:until'
-0.353909 O        b'+1:lemma:1m'
-0.353909 O        b'+1:word:1M'
-0.353909 O        b'-2:lemma:vol'
-0.354844 O        b'lemma:media'
-0.354844 O        b'word:media'
-0.364311 O        b'+2:lemma:a'
-0.368051 O        b'lemma:nitrate'
-0.368051 O        b'word:nitrate'
-0.369958 Air      b'-2:lemma:and'
-0.370055 O        b'-2:lemma:aerobically'
-0.371442 O        b'-1:lemma:mm'
-0.371442 O        b'-1:word:mM'
-0.377685 O        b'+2:lemma:10'
-0.378127 Supp     b'postag:CC'
-0.381117 O        b'+2:lemma:at'
-0.389688 pH       b'isLower'
-0.391439 O        b'+2:lemma:-rrb-'
-0.401482 O        b'-2:lemma:anaerobically'
-0.403860 Air      b'-1:postag:RB'
-0.405233 O        b'lemma:2h'
-0.405233 O        b'-1:lemma:additional'
-0.405233 O        b'word:2h'
-0.405233 O        b'-1:word:additional'
-0.407301 O        b'-1:lemma:grow'
-0.410353 O        b'lemma:minimal'
-0.410353 O        b'word:minimal'
-0.415960 O        b'lemma:anaerobically'
-0.415960 O        b'word:anaerobically'
-0.431864 O        b'+2:lemma:rifampicin'
-0.435994 Gtype    b'+2:lemma:cra'
-0.448208 O        b'+2:lemma:.'
-0.448208 O        b'+2:postag:.'
-0.457862 O        b'-1:lemma:ph'
-0.457862 O        b'-1:word:pH'
-0.462522 O        b'lemma:mid-log'
-0.462522 O        b'word:mid-log'
-0.464717 O        b'-1:postag::'
-0.478899 Gtype    b'postag:VBG'
-0.480305 O        b'+2:postag:-RRB-'
-0.486380 Supp     b'-1:postag:NNP'
-0.487200 pH       b'postag:NN'
-0.487808 O        b'+2:lemma:+'
-0.495639 Air      b'-1:postag:JJ'
-0.498421 Phase    b'isUpper'
-0.501538 O        b'+1:lemma:until'
-0.501538 O        b'+1:word:until'
-0.508531 O        b'-1:lemma:nsrr'
-0.508531 O        b'-1:word:NsrR'
-0.515487 O        b'-2:lemma:phase'
-0.515810 O        b'-1:lemma:30'
-0.515810 O        b'-1:word:30'
-0.523969 Med      b'-2:postag:VBN'
-0.536049 Technique b'isNumber'
-0.539654 O        b'lemma:of'
-0.539654 O        b'word:of'
-0.555532 Supp     b'-2:postag:JJ'
-0.605271 O        b'postag:VBP'
-0.607462 O        b'-1:lemma:1'
-0.607462 O        b'-1:word:1'
-0.610401 O        b'lemma:0.3'
-0.610401 O        b'word:0.3'
-0.654660 O        b'+1:lemma:in'
-0.654660 O        b'+1:word:in'
-0.674407 Anti     b'isUpper'
-0.680937 Air      b'postag:NN'
-0.683120 O        b'+1:postag:IN'
-0.694831 O        b'-2:lemma::'
-0.711579 O        b'+2:lemma:mid-log'
-0.717061 O        b'postag:RB'
-0.727172 O        b'+1:lemma:2.0'
-0.727172 O        b'+1:word:2.0'
-0.727991 O        b'+1:lemma:at'
-0.727991 O        b'+1:word:at'
-0.750617 Gtype    b'isNumber'
-0.754171 O        b'-1:lemma:vol'
-0.754171 O        b'-1:word:vol'
-0.754171 O        b'-2:lemma:1/100'
-0.754171 O        b'+2:lemma:1m'
-0.769142 Gversion b'isLower'
-0.799722 O        b'lemma:rifampicin'
-0.799722 O        b'word:rifampicin'
-0.813037 Gtype    b'-2:lemma:\xe2\x88\x86'
-0.818783 O        b'lemma:30'
-0.818783 O        b'word:30'
-0.832669 Technique b'isLower'
-0.884252 O        b'+1:postag:VBG'
-0.887424 O        b'-2:postag:DT'
-0.937669 O        b'-2:lemma:0.3'
-0.940717 Supp     b'+2:lemma:fructose'
-0.972116 Supp     b'+2:postag:CD'
-0.978709 Gtype    b'isLower'
-1.016999 O        b'-2:lemma:rifampicin'
-1.111059 Agit     b'isUpper'
-1.130478 O        b'-2:postag:RB'
-1.171981 O        b'+2:lemma:then'
-1.242037 Phase    b'postag:JJ'
-1.330863 O        b'+1:lemma:1'
-1.330863 O        b'+1:word:1'
-1.365191 Temp     b'postag:NN'
-1.474036 Supp     b'postag:JJ'
-1.619405 Phase    b'-1:postag:JJ'
-1.653492 Supp     b'+2:lemma:1'
-1.660082 O        b'+1:lemma:2'
-1.660082 O        b'+1:word:2'
-1.959474 O        b'-1:postag:VBG'
-2.021801 Supp     b'+2:lemma:2'
-2.109223 Med      b'-2:lemma:grow'
-2.312172 OD       b'+1:postag:NN'
-2.414666 O        b'-1:lemma::'
-2.414666 O        b'-1:word::'
-2.754541 O        b'-1:lemma:_'
-2.754541 O        b'-1:word:_'
-3.657725 OD       b'+2:lemma:aerobically'
-4.070887 Anti     b'postag:NNP'