upload

@@ -86,6 +86,9 @@ if __name__ == '__main__':
         scores[report[7:11]]['f1-score']=summaryScores[2]       
     
     print(DF(scores).T)
+    print('------------------------------- SAVING TABLE --------------------------------\n')
+    with open(os.path.join(options.inputPath, str(options.figureName) ), 'w') as File:
+    
     scoresTable = DF(scores).T
     
     imageName=os.path.join(options.outputPath, options.figureName)    

+from optparse import OptionParser
+import re
+from collections import defaultdict as df
+import os
+import random
+from pandas import DataFrame as DF
+import matplotlib.pyplot as plt
+
+# Objective
+# Drawn figures of grid reports 
+#
+# Input parameters
+# --inputPath=PATH              Path of inputfiles
+# --outputPath=PATH             Path to place output figures
+# --figureName            single run specific name figure, multifigure first part of name
+# --inputFile             Use it for a single report
+# --version               CRF-script version of reports
+#
+# Output
+# training and test data set
+#
+# Examples
+# python figures-reports.py
+# --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/reports/
+# --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/figures/
+# --figureName FiguresGrid
+# --inputFile report_Run1_v11.txt
+# --version v11
+
+# python figures-tag-report.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/reports/ --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/figures/ --figureName FiguresGrid_v11 --version v11
+__author__ = 'egaytan'
+
+####################################################################################
+#                                   FUNCTIONS                                      #
+####################################################################################
+def Filter(rfile, options,v):
+  if options[0]=='all':
+    if rfile[0:6]=='report' and rfile[-7:-4]==v: return(True)
+  elif rfile in options:
+    return(True)
+  return(False)
+
+####################################################################################
+#                                   MAIN PROGRAM                                  #
+####################################################################################
+
+if __name__ == '__main__':
+    # Defining parameters
+    parser = OptionParser()
+    parser.add_option('--inputPath',  dest='inputPath',   help='Path of output from CoreNLP',           metavar='PATH')
+    parser.add_option('--outputPath', dest='outputPath',  help='Path to place output figures',          metavar='PATH')
+    parser.add_option('--figureName', dest='figureName',  help='Specific or first part of figurename',  metavar='FILE')
+    parser.add_option('--version', dest='version',  help='script version',  metavar='FILE')
+    parser.add_option('--inputFile',  dest='inputFile',   help='Use it for a specific report files',            metavar='FILE', default='all,')
+
+    (options, args) = parser.parse_args()
+    if len(args) > 0:
+        parser.error('Any parameter given.\nFor multi input files be sure to seprate the filenames by coma')
+        sys.exit(1)
+
+    print('-------------------------------- PARAMETERS --------------------------------')
+    print('Path of output from CoreNLP: ' + str(options.inputPath))
+    print('Path to place output figures: ' + str(options.outputPath))
+    print('Specific or first part of figurename: ' + str(options.figureName))
+    print('CRF-script version: ' + str(options.version))
+
+    print('-------------------------------- PROCESSING --------------------------------')
+
+    rawInputRepotsList = str(options.inputFile).split(',')
+    reportFileList = [ rfile for rfile in os.listdir(options.inputPath) if Filter(rfile, rawInputRepotsList, str(options.version)) ]
+    scores = df(dict)
+    #CV={}
+    print('Report files: ' + str(options.inputFile  ))
+    print('\n'.join(reportFileList))
+    print('----------------------------------- NOTE -----------------------------------')
+    print('\n-------- All chosen report files should be in inputPath given---------------\n')
+
+    print('------------------------------- SAVING DATA --------------------------------\n')
+    OD, pH, Technique, Med, Temp, Vess, Agit, Phase, Air, Anti, Strain, Gtype, Substrain, Supp, Gversion = [], [], [], [], [], [], [], [], [], [], [], [], [], [], []
+
+    precision = df(list)
+    recall = df(list)
+    fscore = df(list)
+    support  = df(list)
+    for report in reportFileList:
+        tags = {}
+        with open(os.path.join(options.inputPath, report), 'r') as File:
+            string = File.read()
+            tags['OD']= re.findall('OD\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]     
+            tags['pH']= re.findall('pH\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Technique']= re.findall('Technique\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Med']= re.findall('Med\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Temp']= re.findall('Temp\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Vess']= re.findall('Vess\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Agit']= re.findall('Agit\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Phase']= re.findall('Phase\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Air']= re.findall('Air\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Anti']= re.findall('Anti\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Strain']= re.findall('Strain\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Gtype']= re.findall('Gtype\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Substrain']= re.findall('Substrain\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Supp']= re.findall('Supp\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+            tags['Gversion']= re.findall('Gversion\s+(\d+.\d+)\s+(\d+\.\d+)\s+(\d+\.\d+)', string)[0]
+
+            for k in tags.keys():
+                precision[k].append(float(tags[k][0]))
+                recall[k].append(float(tags[k][1]))
+                fscore[k].append(float(tags[k][2]))
+                #support[k].append(tags[k][3])    
+    print(DF(precision))
+    print(precision)
+    #lines = ['-', '--', '-.', ':', '.', ',', 'o', 'v', '^', '<', '>', '1', '2', '3', '4', 's', 'p', '*', 'h', 'H', '+', 'x', 'D', 'd', '|', '_']
+    lines = ['-','--','-.',':','o','v','^','<','>','s','p','*','H','+','x','D','|']
+    imageName = str(options.figureName) + '_' +  str(options.version)
+    fig = plt.figure()
+    plt.rcParams.update({'font.size': 15})
+    #fig.set_figheight(13)
+    #fig.set_figwidth(20)
+    plt.xlabel("Runs")   
+    plt.ylabel("score")
+    plt.ylim(-0.2, 1.2)
+    lines=['-', '--', '-.', ':', ',', 'o', 'v', '^', '<', '>', '1', '2', '3', '4', 's', 'p', '*', 'h', 'H', '+', 'x', 'D', 'd', '|', '_']
+    for i,k in enumerate(tags.keys()):
+        plt.grid(False)
+	
+        plt.plot(precision[k], lines[i], label=k, linewidth=8)
+    plt.legend(loc='lower right')
+    plt.tight_layout()
+    plt.xticks(range(8),['run1', 'run2', 'run3', 'run4', 'run5', 'run6', 'run7', 'run8'])
+    fig.savefig(imageName, bbox_inches='tight', pad_inches = 0.5)

+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_1 --version _v12 > ../outputs/Run_1.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_2 --version _v12 --S1 > ../outputs/Run_2.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_3 --version _v12 --S2 > ../outputs/Run_3.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_4 --version _v12 --S1 --S2 > ../outputs/Run_4.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_5 --version _v12 --S3 > ../outputs/Run_5.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_6 --version _v12 --S1 --S3 > ../outputs/Run_6.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_7 --version _v12 --S2 --S3 > ../outputs/Run_7.txt
+python3 training_validation_v12.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_8 --version _v12 --S1 --S2 --S3 > ../outputs/Run_8.txt
+
+

+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_1 --version _v13 > ../outputs/Run_1.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_2 --version _v13 --S1 > ../outputs/Run_2.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_3 --version _v13 --S2 > ../outputs/Run_3.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_4 --version _v13 --S1 --S2 > ../outputs/Run_4.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_5 --version _v13 --S3 > ../outputs/Run_5.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_6 --version _v13 --S1 --S3 > ../outputs/Run_6.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_7 --version _v13 --S2 --S3 > ../outputs/Run_7.txt
+python3 training_validation_v13.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --Gridname Run_8 --version _v13 --S1 --S2 --S3 > ../outputs/Run_8.txt
+
+

@@ -423,7 +423,8 @@ if __name__ == "__main__":
     # Saving model
     print("     Saving training model...")
     t1 = time()
-    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '.mod'
+    #nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod'
+    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname)   + str(options.version) + '.mod'
     joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel))
     print("        Saving training model done in: %fs" % (time() - t1))
 

@@ -177,9 +177,9 @@ def word2features(sent, i, S1, S2, S3):
         features['postag[:1]']= postag[:1]
         #lemma and postag secondChar
         if len(lemma)>1:
-            features['lemma[:2]']= lemma[:2]
+            features['lemma[:2]']= lemma[:2]       
         if len(postag)>1:
-            features['postag[:2]']= postag[:2]        
+            features['postag[:2]']= postag[:2]              
     #=========================== S2 =============================#
     ## NAME LEVEL S2
     ## FEATURE TYPE Complete word features
@@ -423,7 +423,9 @@ if __name__ == "__main__":
     # Saving model
     print("     Saving training model...")
     t1 = time()
-    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod'
+    #nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + str(options.version) + '_S3_' + str(options.S3) + '.mod'
+    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname)   + str(options.version) + '.mod'
+
     joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel))
     print("        Saving training model done in: %fs" % (time() - t1))
 

+# -*- coding: UTF-8 -*-
+
+import os
+from itertools import chain
+from optparse import OptionParser
+from time import time
+from collections import Counter
+import re
+
+import nltk
+import sklearn
+import scipy.stats
+import sys
+
+from sklearn.externals import joblib
+from sklearn.metrics import make_scorer
+from sklearn.cross_validation import cross_val_score
+from sklearn.grid_search import RandomizedSearchCV
+
+import sklearn_crfsuite
+from sklearn_crfsuite import scorers
+from sklearn_crfsuite import metrics
+
+from pandas import DataFrame as DF
+from nltk.corpus import stopwords
+
+
+# Objective
+# Training and evaluation of CRFs with sklearn-crfsuite.
+#
+# Input parameters
+# --inputPath=PATH    	Path of training and test data set
+# --trainingFile        File with training data set
+# --testFile        	File with test data set
+# --outputPath=PATH    	Output path to place output files
+# --nameGrid            Number of run
+# --version    		    Version Report
+
+# Output
+# 1) Best model
+# 2) Report
+
+# Examples
+# python training_validation_v10.py
+# --inputPath 			/home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+# --trainingFile 		training-data-set-70.txt
+# --testFile			test-data-set-30.txt
+# --outputPath 			/home/egaytan/automatic-extraction-growth-conditions/CRF/
+# --version    		    _v1
+# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3 
+
+##################################################################
+#                             FEATURES                           # 
+##################################################################
+
+#================== COMPLETE WORD FEATURES ======================#
+
+def isGreek(word):
+    ## Complete word are greek letters
+    alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω',
+    'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω']
+    if word in alphabet:
+        return True
+    else:
+        return False 
+
+#================ INNER OF THE WORD FEATURES ====================#
+
+def hNumber(word):
+    ## Al leats has one greek letter
+    for l in word:
+        if l.isdigit():
+            return True
+    return False
+
+def symb(word):
+    n=0
+    ## At least a not alphanumeric character
+    for l in word:
+        if l.isdigit(): n = n+1
+        if l.isalpha(): n = n+1
+        #Exclude Greek letters
+        if isGreek(l): n = n+1
+
+    if n<len(word): return True
+    else: return False
+
+def hUpper(word):
+    ## At least an upper letter
+    for l in word:
+        if l.isupper(): return True
+    return False
+
+def hLower(word):
+    ## At least a lower letter
+    for l in word:
+        if l.islower(): return True
+    return False 
+
+def hGreek(word):
+    ## At least a greek letter
+    for l in word:
+        if isGreek(l): return True
+    return False    
+
+#============================FEATURES===========================#
+
+def word2features(sent, i, S1, S2, S3):
+    ## Getting word features
+
+    ## Saving CoreNLP annotations
+    listElem = sent[i].split('|')
+    word = listElem[0]
+    lemma = listElem[1]
+    postag = listElem[2]
+    #ner = listElem[4]
+
+    #=========================== G =============================#
+    ## NAME LEVEL G
+    ## FUTURE TYPE General features
+
+    features = {
+        ## basal features
+        'lemma': lemma,
+        'postag': postag
+        }
+
+    ## more tha one word in sentence
+    if i > 0:        
+        ## Anterior word
+        listElem = sent[i - 1].split('|')
+
+        ## Saving CoreNLP annotations
+        lemma0 = listElem[1]
+        postag0 = listElem[2]        
+        features.update({            
+            #LemaG anterior      
+            '-1:lemma': lemma0,
+            #Postag anterior 
+            '-1:postag': postag0,
+        })
+
+    ## is not the last word
+    if i < len(sent) - 1:
+        ## Posterior word 
+        listElem = sent[i + 1].split('|')
+        ## Saving CoreNLP annotations       
+        lemma2 = listElem[1]
+        postag2 = listElem[2]
+
+        features.update({           
+            #LemaG  posterior      
+            '+1:lemma': lemma2,
+            #Postag posterior 
+            '+1:postag': postag2,
+        })    
+
+    #=========================== S1 =============================#
+    ## NAME LEVEL S1
+    ## FEATURE TYPE Inner word features
+
+    if S1:
+        #Add features
+        features['hUpper']=  hUpper(word)
+        features['hLower']=  hUpper(word)
+        features['hGreek']=  hGreek(word)        
+        features['symb']= symb(word)       
+        #word firstChar
+        features['word[:1]']= word[:1]    
+        #word secondChar
+        if len(word)>1:
+            features['word[:2]']= word[:2]               
+        #lemma and postag firstChar
+        #features['lemma[:1]']= lemma[:1]
+        features['postag[:1]']= postag[:1]
+        #lemma and postag secondChar
+        #if len(lemma)>1:
+        #    features['lemma[:2]']= lemma[:2]       
+        if len(postag)>1:
+            features['postag[:2]']= postag[:2]              
+    #=========================== S2 =============================#
+    ## NAME LEVEL S2
+    ## FEATURE TYPE Complete word features
+
+    if S2:
+        #Add features
+        features['word']=  word
+        features['isUpper']=  word.isupper()
+        features['isLower']=  word.islower()
+        features['isGreek']=  isGreek(word)       
+        features['isNumber']= word.isdigit()
+        ## more tha one word in sentence
+        if i > 0:        
+            ## Anterior word
+            listElem = sent[i - 1].split('|')
+            ## Saving CoreNLP annotations
+            word0 = listElem[0]
+            features['-1:word']=  word0
+
+        ## is not the last word
+        if i < len(sent)-1:
+            listElem = sent[i + 1].split('|')
+            ## Saving CoreNLP annotations       
+            word2 = listElem[0]
+            ## Posterior word 
+            features['+1:word']=  word2
+    
+    #=========================== S3 =============================#
+    ## NAME LEVEL S3
+    ## FEATURE TYPE Extended context features
+    if S3:            
+        ## more tha two words in sentence
+        if i > 1:        
+            ## two anterior lemma and postag
+            listElem = sent[i - 2].split('|')
+            ## Saving CoreNLP annotations
+            lemma01 = listElem[1]
+            postag01 = listElem[2]
+            features['-2:lemma']=  lemma01
+            features['-2:postag']=  postag01
+
+        ## is not the penultimate word
+        if i < len(sent) - 2:
+            listElem = sent[i + 2].split('|')
+            ## Saving CoreNLP annotations       
+            lemma02 = listElem[1]
+            postag02 = listElem[2]
+            ## two posterior lemma and postag
+            features['+2:lemma']=  lemma02
+            features['+2:postag']=  postag02
+
+    return features
+
+def sent2features(sent, S1, S2, S3):
+    ## Itering in sentence for each word and saving its features
+    return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))]
+
+def sent2labels(sent):
+    ## 3rd position by word is the label
+    return [elem.split('|')[3] for elem in sent]
+
+def sent2tokens(sent):
+    return [token for token, postag, label in sent]
+
+def print_transitions(trans_features, f):
+    for (label_from, label_to), weight in trans_features:
+        f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight))
+
+def print_state_features(state_features, f):
+    for (attr, label), weight in state_features:
+        f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8")))
+
+
+__author__ = 'egaytan'
+
+##################################################################
+#                            MAIN PROGRAM                        #
+##################################################################
+
+if __name__ == "__main__":
+    ## Defining parameters
+    parser = OptionParser()
+    parser.add_option("--inputPath",        dest="inputPath",       help="Path of training data set",           metavar="PATH")
+    parser.add_option("--outputPath",       dest="outputPath",      help="Output path to place output files",   metavar="PATH")
+    parser.add_option("--trainingFile",     dest="trainingFile",    help="File with training data set",         metavar="FILE")
+    parser.add_option("--testFile",         dest="testFile",        help="File with test data set",             metavar="FILE")
+    parser.add_option("--Gridname",         dest="Gridname",        help="Report number run",                   metavar="FILE")
+    parser.add_option("--version",          dest="version",         help="Report file",                         metavar="FILE")
+    parser.add_option("--S1",               dest="S1",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--S2",               dest="S2",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--S3",               dest="S3",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words",          action="store_true", default=False)
+    parser.add_option("--excludeSymbols",   dest="excludeSymbols",  help="Exclude punctuation marks",   action="store_true", default=False)
+
+
+    (options, args) = parser.parse_args()
+    if len(args) > 0:
+        parser.error("Any parameter given.")
+        sys.exit(1)
+
+    print('-------------------------------- PARAMETERS --------------------------------')
+    print("Path of training data set: " + options.inputPath)
+    print("File with training data set: " + str(options.trainingFile))
+    print("Path of test data set: " + options.inputPath)
+    print("File with test data set: " + str(options.testFile))
+    print("Exclude stop words: " + str(options.excludeStopWords))
+    print("Levels: " + str(options.S1) + " " + str(options.S2))
+    print("Report file: " + str(options.version))
+
+    
+    symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{',
+               '}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...']   
+    print("Exclude symbols: " + str(options.excludeSymbols))
+
+    print('-------------------------------- PROCESSING --------------------------------')
+    print('Reading corpus...')
+    t0 = time()
+
+    sentencesTrainingData = []
+    sentencesTestData = []
+
+    stopwords = [word for word in stopwords.words('english')]
+
+    with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile:
+        for line in iFile.readlines():
+            listLine = []
+            line = line.strip('\n')
+            for token in line.split():
+                if options.excludeStopWords:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in stopwords:
+                        continue
+                if options.excludeSymbols:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in symbols:
+                        continue
+                listLine.append(token)
+            sentencesTrainingData.append(listLine)
+        print("   Sentences training data: " + str(len(sentencesTrainingData)))
+
+    with open(os.path.join(options.inputPath, options.testFile), "r") as iFile:
+        for line in iFile.readlines():
+            listLine = []
+            line = line.strip('\n')
+            for token in line.split():
+                if options.excludeStopWords:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in stopwords:
+                        continue
+                if options.excludeSymbols:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in symbols:
+                        continue
+                listLine.append(token)
+            sentencesTestData.append(listLine)
+        print("   Sentences test data: " + str(len(sentencesTestData)))
+
+    print("Reading corpus done in: %fs" % (time() - t0))
+
+    print('-------------------------------- FEATURES --------------------------------')
+
+    Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2]
+    Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2]
+    print('--------------------------Features Training ---------------------------')
+    print(DF(list(Dtraning.items())))
+    print('--------------------------- FeaturesTest -----------------------------')
+    print(DF(list(Dtest.items())))
+
+    t0 = time()
+
+    X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData]
+    y_train = [sent2labels(s) for s in sentencesTrainingData]
+
+    X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData]
+    # print X_test
+    y_test = [sent2labels(s) for s in sentencesTestData]
+
+    # Fixed parameters
+    # crf = sklearn_crfsuite.CRF(
+    #     algorithm='lbfgs',
+    #     c1=0.1,
+    #     c2=0.1,
+    #     max_iterations=100,
+    #     all_pgossible_transitions=True
+    # )
+
+    # Hyperparameter Optimization
+    crf = sklearn_crfsuite.CRF(
+        algorithm='lbfgs',
+        max_iterations=100,
+        all_possible_transitions=True
+    )
+    params_space = {
+        'c1': scipy.stats.expon(scale=0.5),
+        'c2': scipy.stats.expon(scale=0.05),
+    }
+
+    # Original: labels = list(crf.classes_)
+    # Original: labels.remove('O')
+    labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH'])
+
+    # use the same metric for evaluation
+    f1_scorer = make_scorer(metrics.flat_f1_score,
+                            average='weighted', labels=labels)
+
+    # search
+    rs = RandomizedSearchCV(crf, params_space,
+                            cv=10,
+                            verbose=3,
+                            n_jobs=-1,
+                            n_iter=20,
+                            # n_iter=50,
+                            scoring=f1_scorer)
+    rs.fit(X_train, y_train)
+
+    # Fixed parameters
+    # crf.fit(X_train, y_train)
+
+    # Best hiperparameters
+    # crf = rs.best_estimator_
+  
+    nameReport = str(options.Gridname) + str(options.version) + '.txt'
+    with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile:
+        oFile.write("********** TRAINING AND TESTING REPORT **********\n")
+        oFile.write("Training file: " + options.trainingFile + '\n')
+        oFile.write('\n')
+        oFile.write('best params:' + str(rs.best_params_) + '\n')
+        oFile.write('best CV score:' + str(rs.best_score_) + '\n')
+        oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000))
+
+    print("Training done in: %fs" % (time() - t0))
+    t0 = time()
+
+    # Update best crf
+    crf = rs.best_estimator_
+
+    # Saving model
+    print("     Saving training model...")
+    t1 = time()
+    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname)   + str(options.version) + '.mod'
+    joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel))
+    print("        Saving training model done in: %fs" % (time() - t1))
+
+    # Evaluation against test data
+    y_pred = crf.predict(X_test)
+    print("*********************************")
+    print("Prediction done in: %fs" % (time() - t0))
+
+    # labels = list(crf.classes_)
+    # labels.remove('O')
+
+    with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile:
+        oFile.write('\n')
+        oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels)))
+        oFile.write('\n')
+        # labels = list(crf.classes_)
+        sorted_labels = sorted(
+            labels,
+            key=lambda name: (name[1:], name[0])
+        )
+        oFile.write(metrics.flat_classification_report(
+            y_test, y_pred, labels=sorted_labels, digits=3
+        ))
+        oFile.write('\n')
+
+        oFile.write("\nTop likely transitions:\n")
+        print_transitions(Counter(crf.transition_features_).most_common(50), oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop unlikely transitions:\n")
+        print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop positive:\n")
+        print_state_features(Counter(crf.state_features_).most_common(200), oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop negative:\n")
+        print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile)
+        oFile.write('\n')
+

+# -*- coding: UTF-8 -*-
+
+import os
+from itertools import chain
+from optparse import OptionParser
+from time import time
+from collections import Counter
+import re
+
+import nltk
+import sklearn
+import scipy.stats
+import sys
+
+from sklearn.externals import joblib
+from sklearn.metrics import make_scorer
+from sklearn.cross_validation import cross_val_score
+from sklearn.grid_search import RandomizedSearchCV
+
+import sklearn_crfsuite
+from sklearn_crfsuite import scorers
+from sklearn_crfsuite import metrics
+
+from pandas import DataFrame as DF
+from nltk.corpus import stopwords
+
+
+# Objective
+# Training and evaluation of CRFs with sklearn-crfsuite.
+#
+# Input parameters
+# --inputPath=PATH    	Path of training and test data set
+# --trainingFile        File with training data set
+# --testFile        	File with test data set
+# --outputPath=PATH    	Output path to place output files
+# --nameGrid            Number of run
+# --version    		    Version Report
+
+# Output
+# 1) Best model
+# 2) Report
+
+# Examples
+# python training_validation_v10.py
+# --inputPath 			/home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+# --trainingFile 		training-data-set-70.txt
+# --testFile			test-data-set-30.txt
+# --outputPath 			/home/egaytan/automatic-extraction-growth-conditions/CRF/
+# --version    		    _v1
+# python3 training_validation_v9.py --inputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets --trainingFile training-data-set-70.txt --testFile test-data-set-30.txt --outputPath /home/egaytan/automatic-extraction-growth-conditions/CRF/ --nameGrid Run1 --version _v1 --S1 --S2 --S3 
+
+##################################################################
+#                             FEATURES                           # 
+##################################################################
+
+#================== COMPLETE WORD FEATURES ======================#
+
+def isGreek(word):
+    ## Complete word are greek letters
+    alphabet = ['Α','Β','Γ','Δ','Ε','Ζ','Η','Θ','Ι','Κ','Λ','Μ','Ν','Ξ','Ο','Π','Ρ','Σ','Τ','Υ','Φ','Χ','Ψ','Ω',
+    'α','β','γ','δ','ε','ζ','η','θ','ι','κ','λ','μ','ν','ξ','ο','π','ρ','ς','σ','τ','υ','φ','χ','ψ','ω']
+    if word in alphabet:
+        return True
+    else:
+        return False 
+
+#================ INNER OF THE WORD FEATURES ====================#
+
+def hNumber(word):
+    ## Al leats has one greek letter
+    for l in word:
+        if l.isdigit():
+            return True
+    return False
+
+def symb(word):
+    n=0
+    ## At least a not alphanumeric character
+    for l in word:
+        if l.isdigit(): n = n+1
+        if l.isalpha(): n = n+1
+        #Exclude Greek letters
+        if isGreek(l): n = n+1
+
+    if n<len(word): return True
+    else: return False
+
+def hUpper(word):
+    ## At least an upper letter
+    for l in word:
+        if l.isupper(): return True
+    return False
+
+def hLower(word):
+    ## At least a lower letter
+    for l in word:
+        if l.islower(): return True
+    return False 
+
+def hGreek(word):
+    ## At least a greek letter
+    for l in word:
+        if isGreek(l): return True
+    return False    
+
+#============================FEATURES===========================#
+
+def word2features(sent, i, S1, S2, S3):
+    ## Getting word features
+
+    ## Saving CoreNLP annotations
+    listElem = sent[i].split('|')
+    word = listElem[0]
+    lemma = listElem[1]
+    postag = listElem[2]
+    #ner = listElem[4]
+
+    #=========================== G =============================#
+    ## NAME LEVEL G
+    ## FUTURE TYPE General features
+
+    features = {
+        ## basal features
+        'lemma': lemma,
+        'postag': postag
+        }
+
+    ## more tha one word in sentence
+    if i > 0:        
+        ## Anterior word
+        listElem = sent[i - 1].split('|')
+
+        ## Saving CoreNLP annotations
+        lemma0 = listElem[1]
+        postag0 = listElem[2]        
+        features.update({            
+            #LemaG anterior      
+            '-1:lemma': lemma0,
+            #Postag anterior 
+            '-1:postag': postag0,
+        })
+
+    ## is not the last word
+    if i < len(sent) - 1:
+        ## Posterior word 
+        listElem = sent[i + 1].split('|')
+        ## Saving CoreNLP annotations       
+        lemma2 = listElem[1]
+        postag2 = listElem[2]
+
+        features.update({           
+            #LemaG  posterior      
+            '+1:lemma': lemma2,
+            #Postag posterior 
+            '+1:postag': postag2,
+        })    
+
+    #=========================== S1 =============================#
+    ## NAME LEVEL S1
+    ## FEATURE TYPE Inner word features
+
+    if S1:
+        #Add features
+        features['hUpper']=  hUpper(word)
+        features['hLower']=  hUpper(word)
+        features['hGreek']=  hGreek(word)        
+        features['symb']= symb(word)
+        '''
+        #word firstChar
+        features['word[:1]']= word[:1]    
+        #word secondChar
+        if len(word)>1:
+            features['word[:2]']= word[:2]        
+        '''
+        #lemma and postag firstChar
+        features['lemma[:1]']= lemma[:1]
+        #features['postag[:1]']= postag[:1]
+        #lemma and postag secondChar
+        if len(lemma)>1:
+            features['lemma[:2]']= lemma[:2]       
+        '''
+        if len(postag)>1:
+            features['postag[:2]']= postag[:2]              
+        '''
+    #=========================== S2 =============================#
+    ## NAME LEVEL S2
+    ## FEATURE TYPE Complete word features
+
+    if S2:
+        #Add features
+        features['word']=  word
+        features['isUpper']=  word.isupper()
+        features['isLower']=  word.islower()
+        features['isGreek']=  isGreek(word)       
+        features['isNumber']= word.isdigit()
+        ## more tha one word in sentence
+        if i > 0:        
+            ## Anterior word
+            listElem = sent[i - 1].split('|')
+            ## Saving CoreNLP annotations
+            word0 = listElem[0]
+            features['-1:word']=  word0
+
+        ## is not the last word
+        if i < len(sent)-1:
+            listElem = sent[i + 1].split('|')
+            ## Saving CoreNLP annotations       
+            word2 = listElem[0]
+            ## Posterior word 
+            features['+1:word']=  word2
+    
+    #=========================== S3 =============================#
+    ## NAME LEVEL S3
+    ## FEATURE TYPE Extended context features
+    if S3:            
+        ## more tha two words in sentence
+        if i > 1:        
+            ## two anterior lemma and postag
+            listElem = sent[i - 2].split('|')
+            ## Saving CoreNLP annotations
+            lemma01 = listElem[1]
+            postag01 = listElem[2]
+            features['-2:lemma']=  lemma01
+            features['-2:postag']=  postag01
+
+        ## is not the penultimate word
+        if i < len(sent) - 2:
+            listElem = sent[i + 2].split('|')
+            ## Saving CoreNLP annotations       
+            lemma02 = listElem[1]
+            postag02 = listElem[2]
+            ## two posterior lemma and postag
+            features['+2:lemma']=  lemma02
+            features['+2:postag']=  postag02
+
+    return features
+
+def sent2features(sent, S1, S2, S3):
+    ## Itering in sentence for each word and saving its features
+    return [word2features(sent, i, S1, S2, S3) for i in range(len(sent))]
+
+def sent2labels(sent):
+    ## 3rd position by word is the label
+    return [elem.split('|')[3] for elem in sent]
+
+def sent2tokens(sent):
+    return [token for token, postag, label in sent]
+
+def print_transitions(trans_features, f):
+    for (label_from, label_to), weight in trans_features:
+        f.write("{:6} -> {:7} {:0.6f}\n".format(label_from, label_to, weight))
+
+def print_state_features(state_features, f):
+    for (attr, label), weight in state_features:
+        f.write("{:0.6f} {:8} {}\n".format(weight, label, attr.encode("utf-8")))
+
+
+__author__ = 'egaytan'
+
+##################################################################
+#                            MAIN PROGRAM                        #
+##################################################################
+
+if __name__ == "__main__":
+    ## Defining parameters
+    parser = OptionParser()
+    parser.add_option("--inputPath",        dest="inputPath",       help="Path of training data set",           metavar="PATH")
+    parser.add_option("--outputPath",       dest="outputPath",      help="Output path to place output files",   metavar="PATH")
+    parser.add_option("--trainingFile",     dest="trainingFile",    help="File with training data set",         metavar="FILE")
+    parser.add_option("--testFile",         dest="testFile",        help="File with test data set",             metavar="FILE")
+    parser.add_option("--Gridname",         dest="Gridname",        help="Report number run",                   metavar="FILE")
+    parser.add_option("--version",          dest="version",         help="Report file",                         metavar="FILE")
+    parser.add_option("--S1",               dest="S1",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--S2",               dest="S2",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--S3",               dest="S3",              help="Future Type",                 action="store_true", default=False)
+    parser.add_option("--excludeStopWords", dest="excludeStopWords",help="Exclude stop words",          action="store_true", default=False)
+    parser.add_option("--excludeSymbols",   dest="excludeSymbols",  help="Exclude punctuation marks",   action="store_true", default=False)
+
+
+    (options, args) = parser.parse_args()
+    if len(args) > 0:
+        parser.error("Any parameter given.")
+        sys.exit(1)
+
+    print('-------------------------------- PARAMETERS --------------------------------')
+    print("Path of training data set: " + options.inputPath)
+    print("File with training data set: " + str(options.trainingFile))
+    print("Path of test data set: " + options.inputPath)
+    print("File with test data set: " + str(options.testFile))
+    print("Exclude stop words: " + str(options.excludeStopWords))
+    print("Levels: " + str(options.S1) + " " + str(options.S2))
+    print("Report file: " + str(options.version))
+
+    
+    symbols = ['.', ',', ':', ';', '?', '!', '\'', '"', '<', '>', '(', ')', '-', '_', '/', '\\', '¿', '¡', '+', '{',
+               '}', '[', ']', '*', '%', '$', '#', '&', '°', '`', '...']   
+    print("Exclude symbols: " + str(options.excludeSymbols))
+
+    print('-------------------------------- PROCESSING --------------------------------')
+    print('Reading corpus...')
+    t0 = time()
+
+    sentencesTrainingData = []
+    sentencesTestData = []
+
+    stopwords = [word for word in stopwords.words('english')]
+
+    with open(os.path.join(options.inputPath, options.trainingFile), "r") as iFile:
+        for line in iFile.readlines():
+            listLine = []
+            line = line.strip('\n')
+            for token in line.split():
+                if options.excludeStopWords:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in stopwords:
+                        continue
+                if options.excludeSymbols:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in symbols:
+                        continue
+                listLine.append(token)
+            sentencesTrainingData.append(listLine)
+        print("   Sentences training data: " + str(len(sentencesTrainingData)))
+
+    with open(os.path.join(options.inputPath, options.testFile), "r") as iFile:
+        for line in iFile.readlines():
+            listLine = []
+            line = line.strip('\n')
+            for token in line.split():
+                if options.excludeStopWords:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in stopwords:
+                        continue
+                if options.excludeSymbols:
+                    listToken = token.split('|')
+                    lemma = listToken[1]
+                    if lemma in symbols:
+                        continue
+                listLine.append(token)
+            sentencesTestData.append(listLine)
+        print("   Sentences test data: " + str(len(sentencesTestData)))
+
+    print("Reading corpus done in: %fs" % (time() - t0))
+
+    print('-------------------------------- FEATURES --------------------------------')
+
+    Dtraning = sent2features(sentencesTrainingData[0], options.S1, options.S2, options.S3)[2]
+    Dtest = sent2features(sentencesTestData[0], options.S1, options.S2, options.S3)[2]
+    print('--------------------------Features Training ---------------------------')
+    print(DF(list(Dtraning.items())))
+    print('--------------------------- FeaturesTest -----------------------------')
+    print(DF(list(Dtest.items())))
+
+    t0 = time()
+
+    X_train = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTrainingData]
+    y_train = [sent2labels(s) for s in sentencesTrainingData]
+
+    X_test = [sent2features(s, options.S1, options.S2, options.S3) for s in sentencesTestData]
+    # print X_test
+    y_test = [sent2labels(s) for s in sentencesTestData]
+
+    # Fixed parameters
+    # crf = sklearn_crfsuite.CRF(
+    #     algorithm='lbfgs',
+    #     c1=0.1,
+    #     c2=0.1,
+    #     max_iterations=100,
+    #     all_pgossible_transitions=True
+    # )
+
+    # Hyperparameter Optimization
+    crf = sklearn_crfsuite.CRF(
+        algorithm='lbfgs',
+        max_iterations=100,
+        all_possible_transitions=True
+    )
+    params_space = {
+        'c1': scipy.stats.expon(scale=0.5),
+        'c2': scipy.stats.expon(scale=0.05),
+    }
+
+    # Original: labels = list(crf.classes_)
+    # Original: labels.remove('O')
+    labels = list(['Gtype', 'Gversion', 'Med', 'Phase', 'Strain', 'Substrain', 'Supp', 'Technique', 'Temp', 'OD', 'Anti', 'Agit', 'Air', 'Vess', 'pH'])
+
+    # use the same metric for evaluation
+    f1_scorer = make_scorer(metrics.flat_f1_score,
+                            average='weighted', labels=labels)
+
+    # search
+    rs = RandomizedSearchCV(crf, params_space,
+                            cv=10,
+                            verbose=3,
+                            n_jobs=-1,
+                            n_iter=20,
+                            # n_iter=50,
+                            scoring=f1_scorer)
+    rs.fit(X_train, y_train)
+
+    # Fixed parameters
+    # crf.fit(X_train, y_train)
+
+    # Best hiperparameters
+    # crf = rs.best_estimator_
+  
+    nameReport = str(options.Gridname) + str(options.version) + '.txt'
+    with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="w") as oFile:
+        oFile.write("********** TRAINING AND TESTING REPORT **********\n")
+        oFile.write("Training file: " + options.trainingFile + '\n')
+        oFile.write('\n')
+        oFile.write('best params:' + str(rs.best_params_) + '\n')
+        oFile.write('best CV score:' + str(rs.best_score_) + '\n')
+        oFile.write('model size: {:0.2f}M\n'.format(rs.best_estimator_.size_ / 1000000))
+
+    print("Training done in: %fs" % (time() - t0))
+    t0 = time()
+
+    # Update best crf
+    crf = rs.best_estimator_
+
+    # Saving model
+    print("     Saving training model...")
+    t1 = time()
+    nameModel = 'model_S1_' + str(options.S1) + '_S2_' + str(options.S2) + '_S3_' + str(options.S3) + '_' + str(options.Gridname) + str(options.version) +'.mod'
+    joblib.dump(crf, os.path.join(options.outputPath, "models", nameModel))
+    print("        Saving training model done in: %fs" % (time() - t1))
+
+    # Evaluation against test data
+    y_pred = crf.predict(X_test)
+    print("*********************************")
+    print("Prediction done in: %fs" % (time() - t0))
+
+    # labels = list(crf.classes_)
+    # labels.remove('O')
+
+    with open(os.path.join(options.outputPath, "reports", "report_" + nameReport), mode="a") as oFile:
+        oFile.write('\n')
+        oFile.write("Flat F1: " + str(metrics.flat_f1_score(y_test, y_pred, average='weighted', labels=labels)))
+        oFile.write('\n')
+        # labels = list(crf.classes_)
+        sorted_labels = sorted(
+            labels,
+            key=lambda name: (name[1:], name[0])
+        )
+        oFile.write(metrics.flat_classification_report(
+            y_test, y_pred, labels=sorted_labels, digits=3
+        ))
+        oFile.write('\n')
+
+        oFile.write("\nTop likely transitions:\n")
+        print_transitions(Counter(crf.transition_features_).most_common(50), oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop unlikely transitions:\n")
+        print_transitions(Counter(crf.transition_features_).most_common()[-50:], oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop positive:\n")
+        print_state_features(Counter(crf.state_features_).most_common(200), oFile)
+        oFile.write('\n')
+
+        oFile.write("\nTop negative:\n")
+        print_state_features(Counter(crf.state_features_).most_common()[-200:], oFile)
+        oFile.write('\n')
+

+mv model_S1_False_S2_False_v11_S3_False.mod model_S1_False_S2_False_S3_False_Run_1_v11.mod
+mv model_S1_True_S2_False_v11_S3_False.mod model_S1_True_S2_False_S3_False_Run_2_v11.mod
+mv model_S1_False_S2_True_v11_S3_False.mod model_S1_False_S2_True_S3_False_Run_3_v11.mod
+mv model_S1_True_S2_True_v11_S3_False.mod model_S1_True_S2_True_S3_False_Run_4_v11.mod
+mv model_S1_False_S2_False_v11_S3_True.mod model_S1_False_S2_False_S3_True_Run_5_v11.mod
+mv model_S1_True_S2_False_v11_S3_True.mod model_S1_True_S2_False_S3_True_Run_6_v11.mod
+mv model_S1_False_S2_True_v11_S3_True.mod model_S1_False_S2_True_S3_True_Run_7_v11.mod
+mv model_S1_True_S2_True_v11_S3_True.mod model_S1_True_S2_True_S3_True_Run_8_v11.mod

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: False False
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003697s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+           0         1
+0      lemma         2
+1     postag        CD
+2   -1:lemma  fructose
+3  -1:postag        NN
+--------------------------- FeaturesTest -----------------------------
+           0           1
+0      lemma  delta-arca
+1     postag          NN
+2   -1:lemma           _
+3  -1:postag          NN
+4   +1:lemma           _
+5  +1:postag          CD
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.754459 -   0.9s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.884863 -   1.0s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.921051 -   1.0s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.708368 -   1.1s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.823525 -   1.0s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.686315 -   0.9s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.797169 -   1.0s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.891872 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.827517 -   1.0s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.790114 -   1.1s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.846283 -   1.0s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.794216 -   1.0s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.794216 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.921051 -   1.0s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.898568 -   1.0s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.894596 -   0.9s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.862491 -   1.1s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.902103 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.816050 -   1.1s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.920164 -   1.0s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.827517 -   0.9s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.865939 -   1.1s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.920093 -   1.0s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.913639 -   1.1s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.807845 -   1.1s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.692888 -   0.8s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.710242 -   1.2s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.879947 -   1.0s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.792622 -   1.2s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.683676 -   1.1s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.708368 -   1.0s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.839343 -   0.9s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.683676 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.794216 -   1.1s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.794216 -   1.1s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.854405 -   0.9s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.634294 -   1.1s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.853754 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.857529 -   1.1s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.872319 -   1.1s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.868591 -   1.0s
+[CV] c1=0.566877090439985, c2=0.11885476879365008 ....................
+[CV]  c1=0.566877090439985, c2=0.11885476879365008, score=0.856415 -   1.0s
+[CV] c1=0.2423964251520167, c2=0.029664141745187163 ..................
+[CV]  c1=0.2423964251520167, c2=0.029664141745187163, score=0.921051 -   1.0s
+[CV] c1=1.7051690366028645, c2=0.04119436723956498 ...................
+[CV]  c1=1.7051690366028645, c2=0.04119436723956498, score=0.673456 -   0.9s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.879946 -   1.0s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.902301 -   1.1s
+[CV] c1=0.566877090439985, c2=0.11885476879365008 ....................
+[CV]  c1=0.566877090439985, c2=0.11885476879365008, score=0.707416 -   1.0s
+[CV] c1=0.2423964251520167, c2=0.029664141745187163 ..................
+[CV]  c1=0.2423964251520167, c2=0.029664141745187163, score=0.844183 -   1.0s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.868591 -   1.0s
+[CV] c1=0.25820273038993297, c2=0.1449995527843055 ...................
+[CV]  c1=0.25820273038993297, c2=0.1449995527843055, score=0.848009 -   1.1s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.792622 -   1.1s
+[CV] c1=0.566877090439985, c2=0.11885476879365008 ....................
+[CV]  c1=0.566877090439985, c2=0.11885476879365008, score=0.619013 -   1.0s
+[CV] c1=0.2423964251520167, c2=0.029664141745187163 ..................
+[CV]  c1=0.2423964251520167, c2=0.029664141745187163, score=0.708368 -   1.1s
+[CV] c1=1.7051690366028645, c2=0.04119436723956498 ...................
+[CV]  c1=1.7051690366028645, c2=0.04119436723956498, score=0.829117 -   1.0s
+[CV] c1=0.506331063874698, c2=0.006453306084976453 ...................
+[CV]  c1=0.506331063874698, c2=0.006453306084976453, score=0.827517 -   0.9s
+[CV] c1=0.4716413701252996, c2=0.020707741802851287 ..................
+[CV]  c1=0.4716413701252996, c2=0.020707741802851287, score=0.773639 -   1.1s
+[CV] c1=0.6408852258158738, c2=0.00974947513922504 ...................
+[CV]  c1=0.6408852258158738, c2=0.00974947513922504, score=0.885444 -   0.9s
+[CV] c1=0.2423964251520167, c2=0.029664141745187163 ..................
+[CV]  c1=0.2423964251520167, c2=0.029664141745187163, score=0.820852 -   1.1s
+[CV] c1=1.7051690366028645, c2=0.04119436723956498 ...................
+[CV]  c1=1.7051690366028645, c2=0.04119436723956498, score=0.785357 -   1.0s
+[CV] c1=0.506331063874698, c2=0.006453306084976453 ...................
+[CV]  c1=0.506331063874698, c2=0.006453306084976453, score=0.911899 -   1.0s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.794216 -   1.1s
+[CV] c1=0.566877090439985, c2=0.11885476879365008 ....................
+[CV]  c1=0.566877090439985, c2=0.11885476879365008, score=0.835390 -   0.9s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.924830 -   1.1s
+[CV] c1=0.36321959660359887, c2=0.030083524897554965 .................
+[CV]  c1=0.36321959660359887, c2=0.030083524897554965, score=0.925063 -   1.0s
+[CV] c1=0.506331063874698, c2=0.006453306084976453 ...................
+[CV]  c1=0.506331063874698, c2=0.006453306084976453, score=0.755188 -   1.1s
+[CV] c1=0.40043615725844317, c2=0.045177502071716565 .................
+[CV]  c1=0.40043615725844317, c2=0.045177502071716565, score=0.881748 -   1.2s
+[CV] c1=0.6408852258158738, c2=0.00974947513922504 ...................
+[CV]  c1=0.6408852258158738, c2=0.00974947513922504, score=0.791386 -   0.9s
+[CV] c1=0.2423964251520167, c2=0.029664141745187163 ..................
+[CV]  c1=0.2423964251520167, c2=0.029664141745187163, score=0.903946 -   1.0s
+[CV] c1=1.7051690366028645, c2=0.04119436723956498 ...................
+[CV]  c1=1.7051690366028645, c2=0.04119436723956498, score=0.692122 -   1.1s
+[CV] c1=0.506331063874698, c2=0.006453306084976453 ...................
+[CV]  c1=0.506331063874698, c2=0.006453306084976453, score=0.868591 -   1.0s
+[CV] c1=1.1447553603576668, c2=0.01990190550729197 ...................
+[CV]  c1=1.1447553603576668, c2=0.01990190550729197, score=0.595497 -   1.2s
+[CV] c1=0.5538405782197408, c2=0.07960946817558003 ...................
+[CV]  c1=0.5538405782197408, c2=0.07960946817558003, score=0.927188 -   1.0s
+[CV] c1=0.14843910146742284, c2=0.03226312504680252 ..................
+[CV]  c1=0.14843910146742284, c2=0.03226312504680252, score=0.846394 -   1.1s
+[CV] c1=1.7051690366028645, c2=0.04119436723956498 ...................
+[CV]  c1=1.7051690366028645, c2=0.04119436723956498, score=0.675699 -   1.1s
+[CV] c1=0.506331063874698, c2=0.006453306084976453 ...................
+[CV]  c1=0.506331063874698, c2=0.006453306084976453, score=0.708368 -   1.1s
+[CV] c1=0.4716413701252996, c2=0.020707741802851287 ..................
+[CV]  c1=0.4716413701252996, c2=0.020707741802851287, score=0.794216 -   1.1s
+[CV] c1=0.6408852258158738, c2=0.00974947513922504 ...................
+[CV]  c1=0.6408852258158738, c2=0.00974947513922504, score=0.881136 -   1.1s
+[CV] c1=0.5013481333641194, c2=0.0038888430334755165 .................
+[CV]  c1=0.5013481333641194, c2=0.0038888430334755165, score=0.868591 -   1.0s
+[CV] c1=0.55474081003644, c2=0.03200599838771336 .....................
+[CV]  c1=0.55474081003644, c2=0.03200599838771336, score=0.791386 -   0.9s
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+[CV] c1=0.6236675675631103, c2=0.08801024577462967 ...................
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+[CV] c1=0.06704945233304155, c2=0.06794151143065376 ..................
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+[CV] c1=0.4716413701252996, c2=0.020707741802851287 ..................
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+[CV] c1=1.3109075902903429, c2=0.0987913465628396 ....................
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+[CV] c1=0.19892136084009834, c2=0.0215890963028946 ...................
+[CV]  c1=0.19892136084009834, c2=0.0215890963028946, score=0.906540 -   1.1s
+[CV] c1=0.6236675675631103, c2=0.08801024577462967 ...................
+[CV]  c1=0.6236675675631103, c2=0.08801024577462967, score=0.772475 -   1.1s
+[CV] c1=0.06704945233304155, c2=0.06794151143065376 ..................
+[CV]  c1=0.06704945233304155, c2=0.06794151143065376, score=0.876457 -   0.8s
+Training done in: 6.765294s
+     Saving training model...
+        Saving training model done in: 0.016333s
+*********************************
+Prediction done in: 0.029945s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: True False
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003524s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+           0         1
+0      lemma         2
+1     postag        CD
+2   -1:lemma  fructose
+3  -1:postag        NN
+4     hUpper     False
+5     hLower     False
+6     hGreek     False
+7       symb     False
+8  lemma[:1]         2
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6      hUpper        True
+7      hLower        True
+8      hGreek       False
+9        symb        True
+10  lemma[:1]           d
+11  lemma[:2]          de
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
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+[CV] c1=0.7592894566389128, c2=0.05514117224596054 ...................
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+[CV] c1=0.05001865029147576, c2=0.03772187459395407 ..................
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+[CV] c1=0.2879622492417609, c2=0.003122804893055269 ..................
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+[CV] c1=0.2063113369204353, c2=0.15341573930424565 ...................
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+[CV] c1=0.06894682357962188, c2=0.003142860192667755 .................
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+[CV] c1=0.7592894566389128, c2=0.05514117224596054 ...................
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+[CV] c1=0.05001865029147576, c2=0.03772187459395407 ..................
+[CV]  c1=0.05001865029147576, c2=0.03772187459395407, score=0.864170 -   1.4s
+[CV] c1=0.2879622492417609, c2=0.003122804893055269 ..................
+[CV]  c1=0.2879622492417609, c2=0.003122804893055269, score=0.923528 -   1.1s
+Training done in: 8.470806s
+     Saving training model...
+        Saving training model done in: 0.013144s
+*********************************
+Prediction done in: 0.032331s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: False True
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003601s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+           0         1
+0      lemma         2
+1     postag        CD
+2   -1:lemma  fructose
+3  -1:postag        NN
+4       word         2
+5    isUpper     False
+6    isLower     False
+7    isGreek     False
+8   isNumber      True
+9    -1:word  fructose
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6        word  delta-arcA
+7     isUpper       False
+8     isLower       False
+9     isGreek       False
+10   isNumber       False
+11    -1:word           _
+12    +1:word           _
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
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+[CV] c1=0.17393534309447636, c2=0.03996743049378701 ..................
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+[CV] c1=1.0739040365330779, c2=0.014049858881180455 ..................
+[CV]  c1=1.0739040365330779, c2=0.014049858881180455, score=0.690587 -   1.3s
+[CV] c1=0.7019199343375351, c2=0.014002713155773422 ..................
+[CV]  c1=0.7019199343375351, c2=0.014002713155773422, score=0.714206 -   1.4s
+[CV] c1=1.4843188945989627, c2=0.06435826732715343 ...................
+[CV]  c1=1.4843188945989627, c2=0.06435826732715343, score=0.648506 -   1.4s
+[CV] c1=0.17593338376582365, c2=0.04437736465223883 ..................
+[CV]  c1=0.17593338376582365, c2=0.04437736465223883, score=0.813649 -   1.0s
+Training done in: 8.711573s
+     Saving training model...
+        Saving training model done in: 0.013376s
+*********************************
+Prediction done in: 0.034608s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: True True
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003628s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+            0         1
+0       lemma         2
+1      postag        CD
+2    -1:lemma  fructose
+3   -1:postag        NN
+4      hUpper     False
+5      hLower     False
+6      hGreek     False
+7        symb     False
+8   lemma[:1]         2
+9        word         2
+10    isUpper     False
+11    isLower     False
+12    isGreek     False
+13   isNumber      True
+14    -1:word  fructose
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6      hUpper        True
+7      hLower        True
+8      hGreek       False
+9        symb        True
+10  lemma[:1]           d
+11  lemma[:2]          de
+12       word  delta-arcA
+13    isUpper       False
+14    isLower       False
+15    isGreek       False
+16   isNumber       False
+17    -1:word           _
+18    +1:word           _
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
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+Training done in: 10.069118s
+     Saving training model...
+        Saving training model done in: 0.014113s
+*********************************
+Prediction done in: 0.045015s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: False False
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003560s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+           0         1
+0      lemma         2
+1     postag        CD
+2   -1:lemma  fructose
+3  -1:postag        NN
+4   -2:lemma       Cra
+5  -2:postag       NNP
+--------------------------- FeaturesTest -----------------------------
+           0           1
+0      lemma  delta-arca
+1     postag          NN
+2   -1:lemma           _
+3  -1:postag          NN
+4   +1:lemma           _
+5  +1:postag          CD
+6   -2:lemma     affyexp
+7  -2:postag          JJ
+8   +2:lemma     glucose
+9  +2:postag          NN
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.904317 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.866353 -   1.2s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.782679 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.844592 -   1.2s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.665848 -   1.2s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.935724 -   1.0s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.866353 -   1.1s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.777310 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.722395 -   1.2s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.566809 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.889632 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.893442 -   1.2s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.876191 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.796785 -   1.2s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.808421 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.884047 -   0.9s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.907978 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.697995 -   1.3s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.884047 -   1.1s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.681687 -   1.3s
+[CV] c1=1.3592042869129366, c2=0.07476636430730615 ...................
+[CV]  c1=1.3592042869129366, c2=0.07476636430730615, score=0.702102 -   1.2s
+[CV] c1=0.09124769571379378, c2=0.04714194115622477 ..................
+[CV]  c1=0.09124769571379378, c2=0.04714194115622477, score=0.892074 -   1.1s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.881520 -   1.2s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.874448 -   1.1s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.911799 -   1.1s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.935724 -   1.3s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.878257 -   1.2s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.799307 -   1.2s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.934983 -   1.1s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.823276 -   1.1s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.854811 -   1.0s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.842052 -   1.2s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.791206 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.836305 -   1.1s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.652057 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.934983 -   1.0s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.722395 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.620509 -   1.3s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.934983 -   1.1s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.661453 -   1.3s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.864680 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.797327 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.803280 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.864680 -   1.2s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.676857 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.924118 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.938750 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.925944 -   1.2s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.901233 -   1.2s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.839358 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.722395 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.954937 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.806520 -   1.3s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.854811 -   1.1s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.742882 -   1.3s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.934983 -   1.2s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.859890 -   1.2s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.612120 -   1.2s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.884047 -   1.0s
+[CV] c1=2.282844107076996, c2=0.02119864096637369 ....................
+[CV]  c1=2.282844107076996, c2=0.02119864096637369, score=0.777084 -   1.2s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.922360 -   1.1s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.707667 -   1.2s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.722857 -   1.1s
+[CV] c1=0.06582026288344721, c2=0.05682820602315697 ..................
+[CV]  c1=0.06582026288344721, c2=0.05682820602315697, score=0.935724 -   1.2s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.759131 -   1.3s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.842052 -   1.0s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.797327 -   1.3s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.844358 -   1.2s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.843508 -   1.2s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.839973 -   1.1s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.884047 -   1.1s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.902661 -   1.3s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.876191 -   1.2s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.722395 -   1.2s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.854874 -   1.2s
+[CV] c1=0.0977605809688258, c2=0.02758489827313711 ...................
+[CV]  c1=0.0977605809688258, c2=0.02758489827313711, score=0.796785 -   1.1s
+[CV] c1=0.14456252410554848, c2=0.011570925278244349 .................
+[CV]  c1=0.14456252410554848, c2=0.011570925278244349, score=0.869105 -   1.3s
+[CV] c1=1.1460943161482862, c2=0.026153895974214678 ..................
+[CV]  c1=1.1460943161482862, c2=0.026153895974214678, score=0.867125 -   1.4s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.901578 -   1.2s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.626801 -   1.3s
+[CV] c1=1.3592042869129366, c2=0.07476636430730615 ...................
+[CV]  c1=1.3592042869129366, c2=0.07476636430730615, score=0.806478 -   1.2s
+[CV] c1=0.09124769571379378, c2=0.04714194115622477 ..................
+[CV]  c1=0.09124769571379378, c2=0.04714194115622477, score=0.934983 -   1.1s
+[CV] c1=0.8596830833517516, c2=0.025827069173659647 ..................
+[CV]  c1=0.8596830833517516, c2=0.025827069173659647, score=0.814901 -   1.1s
+[CV] c1=0.12284069651421997, c2=0.07728931563717421 ..................
+[CV]  c1=0.12284069651421997, c2=0.07728931563717421, score=0.859890 -   1.2s
+[CV] c1=0.6718735077115858, c2=0.005745367898834753 ..................
+[CV]  c1=0.6718735077115858, c2=0.005745367898834753, score=0.787478 -   1.2s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.864680 -   1.2s
+[CV] c1=0.09124769571379378, c2=0.04714194115622477 ..................
+[CV]  c1=0.09124769571379378, c2=0.04714194115622477, score=0.845755 -   1.3s
+[CV] c1=0.8596830833517516, c2=0.025827069173659647 ..................
+[CV]  c1=0.8596830833517516, c2=0.025827069173659647, score=0.911204 -   1.1s
+[CV] c1=1.1335935695692325, c2=0.045601607829839186 ..................
+[CV]  c1=1.1335935695692325, c2=0.045601607829839186, score=0.697995 -   1.2s
+[CV] c1=0.09869732897335494, c2=0.023452935233575632 .................
+[CV]  c1=0.09869732897335494, c2=0.023452935233575632, score=0.884047 -   1.1s
+[CV] c1=1.3592042869129366, c2=0.07476636430730615 ...................
+[CV]  c1=1.3592042869129366, c2=0.07476636430730615, score=0.737329 -   1.3s
+[CV] c1=0.09124769571379378, c2=0.04714194115622477 ..................
+[CV]  c1=0.09124769571379378, c2=0.04714194115622477, score=0.916469 -   1.3s
+[CV] c1=0.008182384829545907, c2=0.06802178300715349 .................
+[CV]  c1=0.008182384829545907, c2=0.06802178300715349, score=0.722395 -   1.2s
+[CV] c1=0.026900741799377164, c2=0.022970822090078655 ................
+[CV]  c1=0.026900741799377164, c2=0.022970822090078655, score=0.954937 -   1.0s
+[CV] c1=0.09869732897335494, c2=0.023452935233575632 .................
+[CV]  c1=0.09869732897335494, c2=0.023452935233575632, score=0.907124 -   1.0s
+[CV] c1=0.05355864292308304, c2=0.0537875036655877 ...................
+[CV]  c1=0.05355864292308304, c2=0.0537875036655877, score=0.839355 -   1.2s
+[CV] c1=0.25945079081541905, c2=0.010397595986328969 .................
+[CV]  c1=0.25945079081541905, c2=0.010397595986328969, score=0.925933 -   1.3s
+[CV] c1=1.3026087883632722, c2=0.0508985293942068 ....................
+[CV]  c1=1.3026087883632722, c2=0.0508985293942068, score=0.717653 -   1.3s
+[CV] c1=1.1335935695692325, c2=0.045601607829839186 ..................
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+[CV]  c1=1.28661684935985, c2=0.0006449825527911529, score=0.806520 -   1.1s
+Training done in: 7.767506s
+     Saving training model...
+        Saving training model done in: 0.012868s
+*********************************
+Prediction done in: 0.030345s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: True False
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003627s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+            0         1
+0       lemma         2
+1      postag        CD
+2    -1:lemma  fructose
+3   -1:postag        NN
+4      hUpper     False
+5      hLower     False
+6      hGreek     False
+7        symb     False
+8   lemma[:1]         2
+9    -2:lemma       Cra
+10  -2:postag       NNP
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6      hUpper        True
+7      hLower        True
+8      hGreek       False
+9        symb        True
+10  lemma[:1]           d
+11  lemma[:2]          de
+12   -2:lemma     affyexp
+13  -2:postag          JJ
+14   +2:lemma     glucose
+15  +2:postag          NN
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
+[CV] c1=0.7397744394629708, c2=0.06206881872725856 ...................
+[CV]  c1=0.7397744394629708, c2=0.06206881872725856, score=0.890024 -   1.2s
+[CV] c1=1.2941973038793777, c2=0.037888887789770925 ..................
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+[CV]  c1=0.41184922423682174, c2=0.021708165205365473, score=0.694229 -   1.3s
+Training done in: 9.576261s
+     Saving training model...
+        Saving training model done in: 0.014119s
+*********************************
+Prediction done in: 0.040201s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: False True
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003575s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+            0         1
+0       lemma         2
+1      postag        CD
+2    -1:lemma  fructose
+3   -1:postag        NN
+4        word         2
+5     isUpper     False
+6     isLower     False
+7     isGreek     False
+8    isNumber      True
+9     -1:word  fructose
+10   -2:lemma       Cra
+11  -2:postag       NNP
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6        word  delta-arcA
+7     isUpper       False
+8     isLower       False
+9     isGreek       False
+10   isNumber       False
+11    -1:word           _
+12    +1:word           _
+13   -2:lemma     affyexp
+14  -2:postag          JJ
+15   +2:lemma     glucose
+16  +2:postag          NN
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
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+[CV]  c1=1.138816237017488, c2=0.03695236961293207, score=0.792413 -   1.2s
+Training done in: 9.689625s
+     Saving training model...
+        Saving training model done in: 0.014153s
+*********************************
+Prediction done in: 0.041572s

+-------------------------------- PARAMETERS --------------------------------
+Path of training data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with training data set: training-data-set-70.txt
+Path of test data set: /home/egaytan/automatic-extraction-growth-conditions/CRF/data-sets
+File with test data set: test-data-set-30.txt
+Exclude stop words: False
+Levels: True True
+Report file: _v13
+Exclude symbols: False
+-------------------------------- PROCESSING --------------------------------
+Reading corpus...
+   Sentences training data: 286
+   Sentences test data: 123
+Reading corpus done in: 0.003530s
+-------------------------------- FEATURES --------------------------------
+--------------------------Features Training ---------------------------
+            0         1
+0       lemma         2
+1      postag        CD
+2    -1:lemma  fructose
+3   -1:postag        NN
+4      hUpper     False
+5      hLower     False
+6      hGreek     False
+7        symb     False
+8   lemma[:1]         2
+9        word         2
+10    isUpper     False
+11    isLower     False
+12    isGreek     False
+13   isNumber      True
+14    -1:word  fructose
+15   -2:lemma       Cra
+16  -2:postag       NNP
+--------------------------- FeaturesTest -----------------------------
+            0           1
+0       lemma  delta-arca
+1      postag          NN
+2    -1:lemma           _
+3   -1:postag          NN
+4    +1:lemma           _
+5   +1:postag          CD
+6      hUpper        True
+7      hLower        True
+8      hGreek       False
+9        symb        True
+10  lemma[:1]           d
+11  lemma[:2]          de
+12       word  delta-arcA
+13    isUpper       False
+14    isLower       False
+15    isGreek       False
+16   isNumber       False
+17    -1:word           _
+18    +1:word           _
+19   -2:lemma     affyexp
+20  -2:postag          JJ
+21   +2:lemma     glucose
+22  +2:postag          NN
+Fitting 10 folds for each of 20 candidates, totalling 200 fits
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+[CV] c1=1.320423767018736, c2=0.0006342386585221799 ..................
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+[CV]  c1=1.1730395683067192, c2=0.04136085455259575, score=0.832561 -   1.7s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.898170 -   1.7s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.912922 -   1.7s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.774381 -   1.6s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.889771 -   1.6s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.872077 -   1.5s
+[CV] c1=0.16796773996321945, c2=0.051466183184993 ....................
+[CV]  c1=0.16796773996321945, c2=0.051466183184993, score=0.876526 -   1.7s
+[CV] c1=0.00632707477587882, c2=0.032688081217957285 .................
+[CV]  c1=0.00632707477587882, c2=0.032688081217957285, score=0.854858 -   1.8s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.745317 -   1.8s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.687982 -   1.8s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.694284 -   1.6s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.898170 -   1.7s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.867297 -   1.7s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.859655 -   1.6s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.818750 -   1.8s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.917821 -   1.5s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.927296 -   1.6s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.865754 -   1.8s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.601194 -   1.8s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.917821 -   1.7s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.818750 -   1.5s
+[CV] c1=0.16796773996321945, c2=0.051466183184993 ....................
+[CV]  c1=0.16796773996321945, c2=0.051466183184993, score=0.823313 -   1.9s
+[CV] c1=0.00632707477587882, c2=0.032688081217957285 .................
+[CV]  c1=0.00632707477587882, c2=0.032688081217957285, score=0.939823 -   1.7s
+[CV] c1=0.12475431096451621, c2=0.013861677898849787 .................
+[CV]  c1=0.12475431096451621, c2=0.013861677898849787, score=0.864462 -   1.8s
+[CV] c1=0.6186211042682789, c2=0.021841056417535254 ..................
+[CV]  c1=0.6186211042682789, c2=0.021841056417535254, score=0.923585 -   1.8s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.803283 -   1.7s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.842165 -   1.6s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.947560 -   1.8s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.767841 -   1.7s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.824101 -   1.6s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.950725 -   1.5s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.926731 -   1.7s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.839785 -   1.8s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.744355 -   1.7s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.923585 -   1.7s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.827435 -   1.4s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.701018 -   1.8s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.832180 -   1.8s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.810806 -   1.7s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.869758 -   1.8s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.905285 -   1.5s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.940537 -   1.8s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.945871 -   1.8s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.930867 -   1.8s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.848003 -   1.7s
+[CV] c1=0.35540949764912066, c2=0.05344196426839372 ..................
+[CV]  c1=0.35540949764912066, c2=0.05344196426839372, score=0.931225 -   1.5s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.813790 -   1.8s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.950725 -   1.8s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.932900 -   1.8s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.920469 -   1.6s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.818750 -   1.3s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.950946 -   1.8s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.854858 -   1.7s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.812988 -   1.6s
+[CV] c1=0.5174874167807753, c2=0.020703126745445985 ..................
+[CV]  c1=0.5174874167807753, c2=0.020703126745445985, score=0.946646 -   1.9s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.850628 -   1.5s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.929483 -   1.8s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.927302 -   1.7s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.825027 -   1.7s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.950725 -   1.7s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.912264 -   1.2s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.883482 -   1.8s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.872077 -   1.8s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.862659 -   1.7s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.917821 -   1.6s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.841763 -   1.5s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.839383 -   1.7s
+[CV] c1=0.022485418318991247, c2=0.07226838517970073 .................
+[CV]  c1=0.022485418318991247, c2=0.07226838517970073, score=0.886214 -   1.7s
+[CV] c1=1.4962368934644148, c2=0.005609305438174272 ..................
+[CV]  c1=1.4962368934644148, c2=0.005609305438174272, score=0.907688 -   1.9s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.902802 -   1.8s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.677786 -   1.5s
+[CV] c1=0.190929240598343, c2=0.04355186228965651 ....................
+[CV]  c1=0.190929240598343, c2=0.04355186228965651, score=0.813790 -   1.9s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.865505 -   1.8s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.609476 -   1.8s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.813790 -   1.8s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.946646 -   1.4s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.847957 -   1.8s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.824101 -   1.7s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.931245 -   1.7s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.927509 -   1.7s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.824101 -   1.3s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.844455 -   1.9s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.818750 -   1.8s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.818750 -   1.8s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.862528 -   1.7s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.882795 -   1.4s
+[CV] c1=0.1736092848065649, c2=0.02070619498632359 ...................
+[CV]  c1=0.1736092848065649, c2=0.02070619498632359, score=0.711517 -   1.8s
+[CV] c1=0.3890080123705456, c2=0.06863542905418545 ...................
+[CV]  c1=0.3890080123705456, c2=0.06863542905418545, score=0.694284 -   1.9s
+[CV] c1=0.9907276867534006, c2=0.015068999673777204 ..................
+[CV]  c1=0.9907276867534006, c2=0.015068999673777204, score=0.908266 -   1.6s
+[CV] c1=0.37993592904226775, c2=0.001287546330642171 .................
+[CV]  c1=0.37993592904226775, c2=0.001287546330642171, score=0.696477 -   1.8s
+[CV] c1=0.5132989845379167, c2=0.04018212909012408 ...................
+[CV]  c1=0.5132989845379167, c2=0.04018212909012408, score=0.917821 -   1.5s
+Training done in: 11.427793s
+     Saving training model...
+        Saving training model done in: 0.013545s
+*********************************
+Prediction done in: 0.047166s

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.17555398242003323, 'c2': 0.0008367558417380293}
+best CV score:0.8636034196474707
+model size: 0.06M
+
+Flat F1: 0.7624930609829998
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.690     0.816        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.543     0.362     0.435        69
+       Anti      0.786     1.000     0.880        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.873     0.812     0.841        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.627     0.791     0.700       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.782     0.761     0.762       451
+
+
+Top likely transitions:
+Temp   -> Temp    6.236783
+Agit   -> Agit    5.977368
+Supp   -> Supp    5.723953
+Med    -> Med     5.445232
+Anti   -> Anti    5.324268
+OD     -> OD      5.311513
+Phase  -> Phase   4.992339
+O      -> O       4.981091
+Gtype  -> Gtype   4.717730
+Gversion -> Gversion 4.330989
+Air    -> Air     4.201627
+Technique -> Technique 3.925712
+pH     -> pH      2.615370
+O      -> Supp    1.837983
+Substrain -> Gtype   1.799206
+O      -> Technique 1.591877
+Gtype  -> Supp    1.476534
+O      -> Gtype   1.337075
+Air    -> O       1.306525
+O      -> Temp    0.991053
+Supp   -> O       0.824285
+Temp   -> O       0.739357
+O      -> Phase   0.680154
+Gtype  -> pH      0.472477
+Med    -> O       0.436738
+Gtype  -> Air     0.397033
+O      -> Anti    0.333293
+O      -> Gversion 0.293983
+Phase  -> O       0.274110
+O      -> Med     0.270711
+O      -> pH      0.265830
+Technique -> Air     0.239225
+O      -> OD      0.208609
+OD     -> O       0.168573
+Anti   -> O       0.047017
+Strain -> O       0.043724
+Technique -> Gtype   -0.000116
+Gtype  -> Anti    -0.013188
+Technique -> O       -0.023355
+Supp   -> Med     -0.155280
+Gtype  -> Med     -0.630390
+Gtype  -> O       -0.667165
+O      -> Air     -0.778473
+Phase  -> OD      -1.117260
+Med    -> Supp    -1.179521
+Substrain -> O       -1.530930
+
+
+Top unlikely transitions:
+Temp   -> Temp    6.236783
+Agit   -> Agit    5.977368
+Supp   -> Supp    5.723953
+Med    -> Med     5.445232
+Anti   -> Anti    5.324268
+OD     -> OD      5.311513
+Phase  -> Phase   4.992339
+O      -> O       4.981091
+Gtype  -> Gtype   4.717730
+Gversion -> Gversion 4.330989
+Air    -> Air     4.201627
+Technique -> Technique 3.925712
+pH     -> pH      2.615370
+O      -> Supp    1.837983
+Substrain -> Gtype   1.799206
+O      -> Technique 1.591877
+Gtype  -> Supp    1.476534
+O      -> Gtype   1.337075
+Air    -> O       1.306525
+O      -> Temp    0.991053
+Supp   -> O       0.824285
+Temp   -> O       0.739357
+O      -> Phase   0.680154
+Gtype  -> pH      0.472477
+Med    -> O       0.436738
+Gtype  -> Air     0.397033
+O      -> Anti    0.333293
+O      -> Gversion 0.293983
+Phase  -> O       0.274110
+O      -> Med     0.270711
+O      -> pH      0.265830
+Technique -> Air     0.239225
+O      -> OD      0.208609
+OD     -> O       0.168573
+Anti   -> O       0.047017
+Strain -> O       0.043724
+Technique -> Gtype   -0.000116
+Gtype  -> Anti    -0.013188
+Technique -> O       -0.023355
+Supp   -> Med     -0.155280
+Gtype  -> Med     -0.630390
+Gtype  -> O       -0.667165
+O      -> Air     -0.778473
+Phase  -> OD      -1.117260
+Med    -> Supp    -1.179521
+Substrain -> O       -1.530930
+
+
+Top positive:
+10.045367 Supp     b'lemma:Iron'
+9.100880 O        b'lemma:_'
+8.242002 Strain   b'+1:lemma:substr'
+8.132268 O        b'lemma:Custom'
+7.734397 Air      b'lemma:anaerobic'
+7.632513 Med      b'lemma:MOPS'
+7.625936 Technique b'lemma:ChIP-exo'
+7.390329 O        b'lemma:-'
+7.321441 Phase    b'lemma:exponential'
+7.321441 Phase    b'lemma:stationary'
+7.253404 O        b'lemma:2'
+7.222756 Supp     b'lemma:pq'
+7.207380 Air      b'-1:lemma:ChIP-Seq'
+7.155349 Air      b'lemma:aerobic'
+6.813539 Gtype    b'lemma:wt'
+6.702581 Technique b'lemma:chipseq'
+6.645365 O        b'lemma:rpob'
+6.639496 Phase    b'lemma:mid-log'
+6.639111 Gtype    b'lemma:type'
+6.622009 Air      b'lemma:Aerobic'
+6.527859 O        b'lemma:3'
+6.516390 Gtype    b'lemma:\xce\xb4cra'
+6.499705 O        b'lemma:1'
+6.263452 O        b'-1:lemma:tag'
+6.173201 O        b'lemma:b'
+6.155179 O        b'-1:lemma:ChIP-exo'
+6.024948 Gversion b'lemma:asm584v2'
+6.012376 Gtype    b'lemma:wild-type'
+5.936435 Supp     b'+1:lemma:\xc2\xb5m'
+5.737282 O        b'lemma:Cra'
+5.711321 O        b'lemma:a'
+5.696390 Gversion b'lemma:nc'
+5.639739 Gtype    b'lemma:flag-tag'
+5.639739 Gtype    b'-1:lemma:c-terminal'
+5.628162 O        b'lemma:rep1'
+5.614254 O        b'lemma:rep3'
+5.494137 Gtype    b'+1:lemma:type'
+5.430135 Supp     b'lemma:nacl'
+5.262704 Technique b'lemma:ChIP-Seq'
+4.943606 Supp     b'-1:lemma:Cra'
+4.865297 O        b'lemma:\xcf\x8332'
+4.856195 Gtype    b'lemma:\xce\xb4fur'
+4.812215 Gtype    b'lemma:arca8myc'
+4.661623 Supp     b'lemma:rifampicin'
+4.591681 Technique b'lemma:rna-seq'
+4.567002 O        b'+1:lemma:pq'
+4.496950 O        b'-1:lemma:type'
+4.491357 OD       b'lemma:od450'
+4.482197 O        b'postag:IN'
+4.479634 Supp     b'lemma:acetate'
+4.472507 Med      b'-1:lemma:ml'
+4.471210 Gtype    b'lemma:dfnr'
+4.467873 Supp     b'lemma:nitrate'
+4.378040 Technique b'lemma:rnaseq'
+4.342911 O        b'lemma:ompr'
+4.332518 Supp     b'-1:lemma:+'
+4.328989 Supp     b'lemma:glucose'
+4.308726 O        b'lemma:chip'
+4.302072 Gtype    b'lemma:fnr8myc'
+4.273847 Gtype    b'lemma:\xce\xb4soxr'
+4.190264 Gtype    b'lemma:pk4854'
+4.098705 Anti     b'lemma:none'
+4.079404 Supp     b'lemma:nh4cl'
+3.957229 Anti     b'lemma:\xcf\x8332'
+3.956003 Gtype    b'-1:lemma:\xe2\x88\x86'
+3.953278 Agit     b'+1:lemma:rpm'
+3.941726 Gtype    b'lemma:\xe2\x88\x86'
+3.907768 Technique b'lemma:chip-seq'
+3.905761 Agit     b'lemma:rpm'
+3.904057 Supp     b'-1:lemma:with'
+3.875117 O        b'lemma:with'
+3.849561 Gtype    b'lemma:nsrr'
+3.837199 Strain   b'lemma:k-12'
+3.821133 O        b'-1:lemma:0.3'
+3.819067 Substrain b'lemma:mg1655'
+3.801355 Air      b'postag:RB'
+3.742394 Gtype    b'lemma:delta-fnr'
+3.723431 O        b'lemma:.'
+3.723431 O        b'postag:.'
+3.712638 Gtype    b'+1:lemma:ph5'
+3.706468 Technique b'+1:lemma:chip-exo'
+3.704888 O        b'-1:lemma:lb'
+3.700597 O        b'postag:VBN'
+3.687731 Med      b'lemma:lb'
+3.613975 O        b'lemma:rep2'
+3.608532 Med      b'+1:lemma:0.4'
+3.574989 Temp     b'+1:lemma:in'
+3.569955 Gtype    b'lemma:delta-arca'
+3.550905 O        b'-1:lemma:Aerobic'
+3.528303 Anti     b'lemma:seqa'
+3.503539 Supp     b'lemma:Fe'
+3.492004 Supp     b'lemma:no3'
+3.441556 O        b'postag::'
+3.422006 O        b'lemma:s'
+3.421977 Air      b'-1:lemma:-'
+3.409494 Anti     b'+1:lemma:antibody'
+3.369142 Supp     b'lemma:Leu'
+3.366238 Gversion b'lemma:chip-seq'
+3.352237 pH       b'lemma:5.5'
+3.322800 Supp     b'lemma:dpd'
+3.313361 O        b'postag:CC'
+3.300844 Air      b'lemma:anaerobically'
+3.294952 O        b'-1:lemma:glucose'
+3.283475 Gtype    b'lemma:\xce\xb4ompr'
+3.272195 Gversion b'lemma:000913'
+3.262789 Air      b'lemma:aerobically'
+3.220393 Temp     b'-1:lemma:43'
+3.217440 Temp     b'lemma:43'
+3.214588 O        b'+1:lemma:arca-8myc'
+3.198442 Gtype    b'-1:lemma:rpob'
+3.188606 O        b'+1:lemma:250'
+3.187173 O        b'lemma:harbor'
+3.185320 Gversion b'lemma:u00096'
+3.185320 Gversion b'+1:lemma:.2'
+3.175362 Substrain b'+1:lemma:phtpg'
+3.172542 Gtype    b'lemma:\xce\xb4oxyr'
+3.170170 Supp     b'lemma:Adenine'
+3.164012 Supp     b'lemma:arginine'
+3.136227 O        b'postag:VBG'
+3.104172 Med      b'+1:lemma:2.0'
+3.096505 Temp     b'-1:lemma:\xcf\x8332'
+3.074944 Technique b'-1:lemma:IP'
+3.067448 O        b'-1:lemma:0.3-0.35'
+3.065444 Med      b'lemma:L'
+3.065444 Med      b'+1:lemma:broth'
+3.060118 O        b'lemma:CEL'
+3.054281 O        b'+1:lemma:coli'
+3.051410 O        b'-1:lemma:\xc2\xb0c'
+3.034615 Temp     b'-1:lemma:sample'
+3.029536 Air      b'lemma:anaeroibc'
+3.023155 Substrain b'lemma:mg1655star'
+3.019933 Gtype    b'+1:lemma:pq'
+2.995596 O        b'+1:lemma:acetate'
+2.984619 Gversion b'-1:lemma:nc'
+2.925612 Vess     b'lemma:flask'
+2.925612 Vess     b'-1:lemma:warm'
+2.899963 O        b'-1:lemma:into'
+2.891018 Technique b'-1:lemma:chip-exo'
+2.890525 O        b'+1:lemma:od600'
+2.858430 Supp     b'-1:lemma:vol'
+2.849587 Supp     b'+1:lemma:1'
+2.828369 pH       b'lemma:ph5'
+2.828369 pH       b'+1:lemma:.5'
+2.824538 Technique b'+1:lemma:rna-seq'
+2.822954 O        b'lemma:ml'
+2.817516 Med      b'lemma:m63'
+2.799830 O        b'+1:lemma:chip-seq'
+2.787598 Gtype    b'-1:lemma:delta'
+2.779697 Supp     b'lemma:fructose'
+2.767969 Anti     b'lemma:anti-myc'
+2.763373 Med      b'lemma:minimal'
+2.743566 Gversion b'lemma:.2'
+2.743566 Gversion b'-1:lemma:u00096'
+2.740028 O        b'lemma:at'
+2.726573 O        b'+1:lemma:mid-log'
+2.723830 Med      b'lemma:media'
+2.690230 Gtype    b'-1:lemma:ptac'
+2.654749 Phase    b'-1:lemma:mid-log'
+2.599977 Temp     b'-1:lemma:37'
+2.596352 Supp     b'+1:lemma:mm'
+2.585123 O        b'lemma:genotype/variation'
+2.571508 pH       b'+1:lemma:5.5'
+2.562718 O        b'+1:postag:RB'
+2.562005 Med      b'lemma:broth'
+2.562005 Med      b'-1:lemma:L'
+2.554222 O        b'+1:postag:NNP'
+2.535600 Gtype    b'+1:lemma:_'
+2.518199 pH       b'+1:postag:CD'
+2.518124 Gtype    b'+1:lemma:with'
+2.491187 Supp     b'-1:lemma:sodium'
+2.469590 Gtype    b'-1:postag:VBG'
+2.467682 O        b'lemma::'
+2.457707 Gtype    b'+1:lemma:flagtag'
+2.438605 Supp     b'-1:lemma:\xc2\xb5m'
+2.431369 O        b'lemma:delta'
+2.383985 O        b'-1:lemma:rpm'
+2.377086 O        b'lemma:condition'
+2.376152 Gtype    b'-1:lemma:factor'
+2.371623 Med      b'-1:lemma:fresh'
+2.370677 O        b'lemma:agitation'
+2.284942 O        b'-1:lemma:l1'
+2.275556 Supp     b'lemma:2h'
+2.275556 Supp     b'-1:lemma:additional'
+2.274947 Phase    b'lemma:phase'
+2.266504 Gtype    b'+1:postag::'
+2.261288 Supp     b'+1:lemma:2'
+2.260087 O        b'lemma:culture'
+2.253128 Temp     b'lemma:\xc2\xb0c'
+2.230044 Gtype    b'lemma:deltaseqa'
+2.230044 Gtype    b'-1:lemma:old'
+2.227831 O        b'+1:lemma:or'
+2.192592 O        b'+1:lemma:sparging'
+2.165330 O        b'lemma:chip-arca'
+2.117423 Gtype    b'lemma:ptac'
+2.114952 Temp     b'lemma:37'
+2.108020 Med      b'-1:lemma:glucose'
+2.104393 Supp     b'+1:lemma:_'
+2.087736 Med      b'+1:lemma:g/l'
+2.077989 Vess     b'+1:lemma:at'
+2.059857 Phase    b'-1:lemma:until'
+
+
+Top negative:
+0.000742 Supp     b'postag::'
+0.000442 Air      b'-1:lemma:phase'
+0.000211 Supp     b'lemma:,'
+0.000211 Supp     b'postag:,'
+0.000137 O        b'+1:postag:CD'
+0.000131 Supp     b'lemma:;'
+0.000131 Supp     b'-1:lemma:7.6'
+0.000123 Air      b'lemma:-lrb-'
+0.000116 Air      b'postag:-LRB-'
+0.000115 Temp     b'postag:CD'
+0.000114 Air      b'lemma:95'
+0.000098 O        b'lemma:IP'
+0.000087 Supp     b'+1:lemma:10'
+0.000082 Air      b'+1:postag:CC'
+0.000081 O        b'+1:lemma:phase'
+0.000081 Air      b'+1:lemma:n2'
+0.000068 Air      b'-1:lemma:and'
+0.000067 O        b'lemma:dpd'
+0.000062 Temp     b'-1:postag:IN'
+0.000059 Air      b'+1:lemma:-rrb-'
+0.000058 Air      b'+1:postag:-RRB-'
+0.000057 Air      b'postag:CC'
+0.000036 Supp     b'lemma:m'
+0.000028 Med      b'+1:postag:VBG'
+0.000020 Gversion b'-1:postag::'
+0.000008 Air      b'-1:lemma:-lrb-'
+0.000007 Air      b'-1:postag:-LRB-'
+0.000001 O        b'+1:lemma:anti-fur'
+-0.000004 O        b'+1:lemma:contain'
+-0.000005 O        b'+1:lemma:7.6'
+-0.000018 O        b'-1:lemma:95'
+-0.000026 O        b'-1:lemma:anaerobically'
+-0.000028 O        b'lemma:m'
+-0.000035 O        b'lemma:co2'
+-0.000041 Supp     b'+1:postag:IN'
+-0.000044 O        b'lemma:n2'
+-0.000052 Gtype    b'-1:postag:NNP'
+-0.000060 O        b'lemma:;'
+-0.000060 O        b'-1:lemma:7.6'
+-0.000139 O        b'+1:lemma:95'
+-0.000142 O        b'lemma:phase'
+-0.000218 O        b'lemma:7.6'
+-0.000218 O        b'+1:lemma:;'
+-0.000325 O        b'-1:lemma:rifampicin'
+-0.000388 Med      b'postag:JJ'
+-0.000590 Gtype    b'+1:lemma:\xe2\x88\x86'
+-0.000903 O        b'lemma:fecl2'
+-0.001037 Med      b'-1:postag:CD'
+-0.002018 OD       b'postag:NN'
+-0.002219 O        b'-1:postag:DT'
+-0.002619 Agit     b'-1:postag:NN'
+-0.002670 Agit     b'postag:NN'
+-0.002713 Supp     b'-1:lemma:,'
+-0.002713 Supp     b'-1:postag:,'
+-0.002864 O        b'-1:lemma:rpob'
+-0.004052 Gtype    b'+1:lemma:-rrb-'
+-0.005593 O        b'lemma:%'
+-0.005800 Supp     b'+1:lemma:of'
+-0.006031 O        b'-1:postag:-RRB-'
+-0.006630 Supp     b'lemma:and'
+-0.008960 O        b'+1:lemma:5'
+-0.009041 Gtype    b'-1:lemma:mg1655'
+-0.010663 O        b'+1:lemma:-lrb-'
+-0.011765 O        b'+1:lemma:for'
+-0.012164 Gtype    b'+1:postag:CD'
+-0.013897 Supp     b'-1:lemma:dpd'
+-0.017334 Gtype    b'-1:postag:NN'
+-0.017694 Gtype    b'postag:VBG'
+-0.017980 O        b'lemma:dissolve'
+-0.019810 O        b'+1:lemma:co2'
+-0.022198 Supp     b'-1:lemma:10'
+-0.025394 Med      b'-1:postag:NN'
+-0.025755 Air      b'-1:postag:CC'
+-0.043211 Supp     b'-1:lemma:.'
+-0.043211 Supp     b'-1:postag:.'
+-0.051959 O        b'-1:lemma:g/l'
+-0.055702 O        b'-1:lemma:with'
+-0.063942 Supp     b'lemma:mm'
+-0.068985 Technique b'postag:NN'
+-0.073087 Air      b'postag:CD'
+-0.077219 O        b'lemma:1m'
+-0.080485 O        b'-1:lemma:~'
+-0.085050 O        b'+1:lemma:-rrb-'
+-0.092426 Supp     b'-1:lemma:;'
+-0.092628 Gtype    b'-1:postag:CD'
+-0.096816 Gtype    b'postag:CD'
+-0.119110 O        b'lemma:aerobic'
+-0.126644 O        b'-1:lemma:of'
+-0.131761 Supp     b'-1:postag:NN'
+-0.134231 Phase    b'-1:lemma:at'
+-0.136658 O        b'+1:lemma:%'
+-0.141146 O        b'-1:lemma:iptg'
+-0.144992 O        b'+1:lemma:ph'
+-0.157744 Phase    b'+1:postag:NN'
+-0.157765 Anti     b'+1:postag:JJ'
+-0.163999 O        b'lemma:wt'
+-0.189704 O        b'+1:lemma:fnr'
+-0.198314 Gversion b'+1:postag:NN'
+-0.216819 Technique b'-1:lemma::'
+-0.221198 O        b'-1:lemma:from'
+-0.226083 Med      b'postag:CD'
+-0.230714 O        b'-1:lemma:until'
+-0.237769 Supp     b'postag:NN'
+-0.242723 O        b'-1:lemma:m'
+-0.263854 O        b'-1:lemma:1m'
+-0.266928 O        b'+1:postag:-LRB-'
+-0.269887 O        b'lemma:od600'
+-0.286157 Supp     b'postag:CD'
+-0.303058 Supp     b'lemma:10'
+-0.318379 O        b'lemma:37'
+-0.338883 O        b'lemma:medium'
+-0.349993 Supp     b'postag:CC'
+-0.363924 Gtype    b'+1:lemma:-lrb-'
+-0.367167 O        b'+1:lemma:.'
+-0.367167 O        b'+1:postag:.'
+-0.369526 O        b'-1:postag:IN'
+-0.374776 O        b'-1:lemma:-lrb-'
+-0.396666 O        b'lemma:minimal'
+-0.401132 Supp     b'+1:lemma:nacl'
+-0.401200 O        b'lemma:20'
+-0.413658 O        b'+1:lemma:+'
+-0.420906 O        b'+1:lemma:supplement'
+-0.422140 O        b'-1:lemma:37'
+-0.449399 O        b'-1:lemma:final'
+-0.475371 Supp     b'+1:lemma:rifampicin'
+-0.479924 O        b'-1:postag:-LRB-'
+-0.482195 Med      b'+1:postag:NN'
+-0.502676 Med      b'-1:postag:IN'
+-0.510386 O        b'lemma:aerobically'
+-0.534746 O        b'lemma:ph'
+-0.537042 Supp     b'+1:lemma:dpd'
+-0.553037 O        b'lemma:\xe2\x88\x86'
+-0.562667 Supp     b'+1:lemma:fructose'
+-0.579922 O        b'+1:postag:-RRB-'
+-0.590146 Air      b'-1:lemma:or'
+-0.593093 O        b'lemma:mid-log'
+-0.607111 O        b'-1:lemma:n2'
+-0.610949 Supp     b'-1:lemma:-lrb-'
+-0.623891 O        b'-1:lemma:cra'
+-0.632807 pH       b'postag:NN'
+-0.636218 O        b'lemma:nitrogen'
+-0.650697 Technique b'-1:postag::'
+-0.667765 Supp     b'-1:postag:-LRB-'
+-0.674159 O        b'+1:lemma:2.0'
+-0.694197 O        b'-1:lemma:co2'
+-0.701703 O        b'-1:lemma:ml'
+-0.713992 O        b'-1:lemma:\xe2\x88\x86'
+-0.749394 O        b'-1:lemma:mm'
+-0.789720 O        b'lemma:2h'
+-0.789720 O        b'-1:lemma:additional'
+-0.820603 O        b'+1:lemma:until'
+-0.839385 O        b'lemma:methanol'
+-0.843808 O        b'lemma:anaerobically'
+-0.860222 O        b'-1:lemma:delta'
+-0.871696 O        b'+1:lemma:1m'
+-0.880227 O        b'+1:postag:IN'
+-0.923850 Supp     b'+1:postag:VBN'
+-0.934662 Supp     b'+1:lemma:acetate'
+-0.987240 O        b'+1:lemma:g/l'
+-0.987424 O        b'-1:postag::'
+-1.031889 O        b'lemma:media'
+-1.050292 O        b'-1:lemma:dissolve'
+-1.050292 O        b'+1:lemma:methanol'
+-1.063258 O        b'+1:lemma:at'
+-1.121215 O        b'-1:lemma:ph'
+-1.124241 Supp     b'-1:postag:NNP'
+-1.124243 O        b'-1:lemma:nsrr'
+-1.178115 Anti     b'postag:NNP'
+-1.210563 O        b'lemma:of'
+-1.231717 O        b'+1:lemma:mm'
+-1.234806 Air      b'postag:NN'
+-1.361331 Air      b'+1:postag:JJ'
+-1.388315 O        b'+1:postag:VBG'
+-1.395520 O        b'postag:VBP'
+-1.437329 Temp     b'postag:NN'
+-1.497705 O        b'-1:lemma:30'
+-1.515627 Phase    b'-1:postag:JJ'
+-1.587348 O        b'-1:lemma:fresh'
+-1.648330 O        b'-1:lemma:sample'
+-1.699219 Supp     b'+1:lemma:-lrb-'
+-1.725672 O        b'+1:lemma:1'
+-1.740394 O        b'lemma:30'
+-1.747868 Supp     b'+1:postag:-LRB-'
+-1.758948 O        b'-1:lemma:IP'
+-1.840034 Supp     b'+1:lemma:,'
+-1.840034 Supp     b'+1:postag:,'
+-1.883643 Phase    b'postag:JJ'
+-1.897236 O        b'-1:lemma:2'
+-1.932081 OD       b'+1:postag:NN'
+-1.999100 O        b'lemma:rifampicin'
+-2.008414 O        b'+1:lemma:in'
+-2.134731 O        b'-1:lemma:1'
+-2.149272 Supp     b'postag:JJ'
+-2.244551 O        b'lemma:0.3'
+-2.273539 O        b'+1:lemma:2'
+-2.385609 O        b'-1:postag:VBG'
+-2.393117 O        b'-1:lemma:vol'
+-2.614797 Temp     b'+1:postag:IN'
+-4.634459 O        b'-1:lemma:_'
+-4.978327 O        b'-1:lemma::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.14843910146742284, 'c2': 0.03226312504680252}
+best CV score:0.8612823170568367
+model size: 0.07M
+
+Flat F1: 0.7860849079440478
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.690     0.816        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.543     0.362     0.435        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.878     0.847     0.862        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.731     0.791     0.760       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.819     0.765     0.786       451
+
+
+Top likely transitions:
+Temp   -> Temp    5.530931
+Agit   -> Agit    5.252892
+Med    -> Med     5.060058
+OD     -> OD      5.010656
+Supp   -> Supp    4.868977
+Anti   -> Anti    4.778087
+Phase  -> Phase   4.545953
+Gtype  -> Gtype   4.505488
+O      -> O       4.397808
+Air    -> Air     4.207182
+Gversion -> Gversion 4.184434
+Technique -> Technique 3.303412
+pH     -> pH      2.824139
+Gtype  -> Supp    1.667731
+O      -> Supp    1.652196
+Substrain -> Gtype   1.583082
+Air    -> O       1.417656
+O      -> Technique 1.331982
+O      -> Gtype   1.241437
+Gtype  -> Air     0.970767
+O      -> Temp    0.956558
+Technique -> Air     0.825884
+Supp   -> O       0.782386
+Gtype  -> pH      0.768653
+Med    -> O       0.684439
+Temp   -> O       0.624874
+O      -> Anti    0.553272
+O      -> Phase   0.459901
+O      -> Gversion 0.367975
+Strain -> O       0.312627
+O      -> Med     0.232469
+Phase  -> O       0.226758
+OD     -> O       0.226193
+O      -> OD      0.174193
+O      -> pH      0.160341
+Anti   -> O       0.049474
+Phase  -> Supp    -0.001306
+Anti   -> Gtype   -0.002165
+Anti   -> Med     -0.020656
+Temp   -> Med     -0.024123
+Supp   -> Technique -0.033921
+Phase  -> Technique -0.039561
+Supp   -> Gtype   -0.050932
+Gtype  -> Technique -0.103217
+Gtype  -> O       -0.123668
+Supp   -> Air     -0.177566
+Gtype  -> Gversion -0.243460
+Air    -> Phase   -0.247860
+Technique -> OD      -0.306784
+Gtype  -> Anti    -0.344939
+
+
+Top unlikely transitions:
+Air    -> Air     4.207182
+Gversion -> Gversion 4.184434
+Technique -> Technique 3.303412
+pH     -> pH      2.824139
+Gtype  -> Supp    1.667731
+O      -> Supp    1.652196
+Substrain -> Gtype   1.583082
+Air    -> O       1.417656
+O      -> Technique 1.331982
+O      -> Gtype   1.241437
+Gtype  -> Air     0.970767
+O      -> Temp    0.956558
+Technique -> Air     0.825884
+Supp   -> O       0.782386
+Gtype  -> pH      0.768653
+Med    -> O       0.684439
+Temp   -> O       0.624874
+O      -> Anti    0.553272
+O      -> Phase   0.459901
+O      -> Gversion 0.367975
+Strain -> O       0.312627
+O      -> Med     0.232469
+Phase  -> O       0.226758
+OD     -> O       0.226193
+O      -> OD      0.174193
+O      -> pH      0.160341
+Anti   -> O       0.049474
+Phase  -> Supp    -0.001306
+Anti   -> Gtype   -0.002165
+Anti   -> Med     -0.020656
+Temp   -> Med     -0.024123
+Supp   -> Technique -0.033921
+Phase  -> Technique -0.039561
+Supp   -> Gtype   -0.050932
+Gtype  -> Technique -0.103217
+Gtype  -> O       -0.123668
+Supp   -> Air     -0.177566
+Gtype  -> Gversion -0.243460
+Air    -> Phase   -0.247860
+Technique -> OD      -0.306784
+Gtype  -> Anti    -0.344939
+O      -> Air     -0.501788
+Supp   -> Med     -0.605352
+OD     -> Air     -0.613240
+Technique -> pH      -0.690682
+Gtype  -> Med     -0.722078
+Phase  -> OD      -0.801917
+Technique -> Gtype   -1.071131
+Substrain -> O       -1.244706
+Med    -> Supp    -1.620782
+
+
+Top positive:
+7.616993 O        b'lemma:_'
+6.105092 Supp     b'lemma:Iron'
+6.103829 Air      b'lemma:anaerobic'
+5.778936 O        b'lemma:2'
+5.395636 Technique b'lemma:ChIP-exo'
+5.204401 O        b'lemma:1'
+5.144386 Supp     b'lemma:pq'
+5.103835 Phase    b'lemma:mid-log'
+5.083193 Air      b'lemma:Aerobic'
+5.031561 Technique b'lemma:chipseq'
+5.005363 Gtype    b'lemma:wt'
+4.790043 O        b'postag:IN'
+4.685173 O        b'lemma:3'
+4.622144 Gtype    b'lemma:\xce\xb4cra'
+4.524605 Air      b'lemma:aerobic'
+4.365549 O        b'lemma:rpob'
+4.310154 O        b'lemma:-'
+4.272698 Gtype    b'lemma:wild-type'
+4.264401 Phase    b'lemma:exponential'
+4.264401 Phase    b'lemma:stationary'
+4.248629 Gversion b'lemma:asm584v2'
+4.178525 Supp     b'+1:lemma:\xc2\xb5m'
+4.162767 Supp     b'lemma:glucose'
+4.086811 O        b'lemma:b'
+4.074447 O        b'lemma:Cra'
+4.061821 Gtype    b'lemma:flag-tag'
+4.061821 Gtype    b'-1:lemma:c-terminal'
+4.047125 O        b'-1:lemma:tag'
+4.029539 Med      b'lemma:MOPS'
+4.012096 Air      b'-1:lemma:ChIP-Seq'
+3.859049 Strain   b'+1:lemma:substr'
+3.808960 Gtype    b'lemma:type'
+3.796393 Gtype    b'lemma:arca8myc'
+3.770798 Gtype    b'+1:lemma:type'
+3.739682 Substrain b'lemma:mg1655'
+3.729115 O        b'postag::'
+3.712923 Supp     b'lemma:acetate'
+3.671833 O        b'lemma:a'
+3.624682 O        b'postag:CC'
+3.612738 Technique b'lemma:rna-seq'
+3.596048 Gtype    b'lemma:\xe2\x88\x86'
+3.593479 O        b'lemma:rep1'
+3.583965 Supp     b'lemma:nh4cl'
+3.580142 O        b'-1:lemma:ChIP-exo'
+3.553131 Supp     b'lemma:nacl'
+3.491025 Strain   b'lemma:k-12'
+3.486896 Gversion b'lemma:nc'
+3.433417 Med      b'lemma:lb'
+3.397151 O        b'lemma:Custom'
+3.387581 O        b'lemma:rep3'
+3.356308 O        b'lemma:.'
+3.356308 O        b'postag:.'
+3.347331 Gtype    b'-1:lemma:\xe2\x88\x86'
+3.332260 O        b'postag:VBN'
+3.317828 Technique b'lemma:chip-seq'
+3.289766 Technique b'lemma:rnaseq'
+3.273328 Supp     b'lemma:rifampicin'
+3.260083 Air      b'postag:RB'
+3.239788 O        b'lemma:\xcf\x8332'
+3.184025 Supp     b'lemma:no3'
+3.179953 Supp     b'-1:lemma:with'
+3.167149 Gtype    b'lemma:fnr8myc'
+3.116958 Supp     b'lemma:nitrate'
+3.090571 Gtype    b'+1:lemma:ph5'
+3.048182 O        b'lemma:rep2'
+3.022284 Gtype    b'lemma:\xce\xb4fur'
+3.020572 Supp     b'-1:lemma:Cra'
+2.950744 O        b'-1:lemma:type'
+2.942210 Supp     b'lemma:dpd'
+2.937225 Technique b'lemma:ChIP-Seq'
+2.936793 Gtype    b'lemma:\xce\xb4soxr'
+2.927620 Gtype    b'lemma:delta-fnr'
+2.925981 O        b'-1:lemma:lb'
+2.918937 Gtype    b'lemma:dfnr'
+2.900745 Anti     b'lemma:none'
+2.897719 Gtype    b'+1:lemma:with'
+2.890673 O        b'+1:lemma:pq'
+2.880633 Agit     b'+1:lemma:rpm'
+2.873201 O        b'lemma:CEL'
+2.867468 Agit     b'lemma:rpm'
+2.840511 Air      b'-1:lemma:-'
+2.820801 Technique b'-1:lemma:IP'
+2.805716 Anti     b'lemma:\xcf\x8332'
+2.773458 O        b'lemma:ompr'
+2.771820 Med      b'-1:lemma:ml'
+2.757736 Supp     b'lemma:Leu'
+2.751066 O        b'lemma:chip'
+2.746879 Med      b'+1:lemma:0.4'
+2.739214 O        b'lemma:with'
+2.708793 Gversion b'-1:lemma:nc'
+2.677018 Gtype    b'lemma:nsrr'
+2.670707 Anti     b'lemma:seqa'
+2.659020 O        b'-1:lemma:glucose'
+2.657995 Air      b'lemma:anaeroibc'
+2.657818 Supp     b'+1:lemma:Deficient'
+2.656948 O        b'-1:lemma:0.3'
+2.632783 Supp     b'-1:lemma:vol'
+2.623222 Supp     b'-1:lemma:+'
+2.618308 Med      b'lemma:m63'
+2.613887 Gtype    b'lemma:pk4854'
+2.602756 Anti     b'+1:lemma:antibody'
+2.584538 Gversion b'lemma:chip-seq'
+2.544864 Gversion b'lemma:u00096'
+2.544864 Gversion b'+1:lemma:.2'
+2.544234 Air      b'lemma:anaerobically'
+2.544093 O        b'postag:VBG'
+2.528939 Gtype    b'-1:lemma:ptac'
+2.520188 Gtype    b'lemma:delta-arca'
+2.516132 Gversion b'lemma:000913'
+2.509681 Vess     b'lemma:flask'
+2.509681 Vess     b'-1:lemma:warm'
+2.499520 Supp     b'lemma:Fe'
+2.491894 Substrain b'+1:lemma:phtpg'
+2.487911 O        b'-1:lemma:Aerobic'
+2.475312 Temp     b'-1:lemma:43'
+2.473537 Phase    b'-1:lemma:mid-log'
+2.445140 pH       b'+1:postag:CD'
+2.435584 O        b'-1:lemma:stpa'
+2.432404 O        b'+1:lemma:coli'
+2.392472 Technique b'-1:lemma:chip-exo'
+2.379148 Air      b'lemma:aerobically'
+2.378189 Gversion b'lemma:.2'
+2.378189 Gversion b'-1:lemma:u00096'
+2.373909 Med      b'lemma:media'
+2.372719 Temp     b'lemma:\xc2\xb0c'
+2.370280 O        b'lemma:affyexp'
+2.367475 Supp     b'lemma:fructose'
+2.367118 pH       b'lemma:ph5'
+2.367118 pH       b'+1:lemma:.5'
+2.365883 O        b'lemma:harbor'
+2.365510 Gtype    b'+1:lemma:_'
+2.364550 O        b'lemma:chip-arca'
+2.364293 Supp     b'+1:lemma:1'
+2.351215 Supp     b'lemma:arginine'
+2.338576 O        b'+1:lemma:od600'
+2.338214 Phase    b'lemma:phase'
+2.325110 O        b'lemma:s'
+2.324133 Supp     b'+1:lemma:mm'
+2.321311 Gtype    b'+1:lemma:pq'
+2.296132 Supp     b'-1:lemma:sodium'
+2.261992 Temp     b'-1:lemma:\xcf\x8332'
+2.260351 Substrain b'lemma:mg1655star'
+2.248740 Gtype    b'lemma:WT'
+2.246446 Supp     b'lemma:Adenine'
+2.241646 Temp     b'+1:lemma:in'
+2.224289 Anti     b'lemma:anti-myc'
+2.211744 Med      b'lemma:broth'
+2.211744 Med      b'-1:lemma:L'
+2.206966 O        b'+1:lemma:arca-8myc'
+2.206282 Med      b'+1:lemma:2.0'
+2.189025 Med      b'lemma:L'
+2.189025 Med      b'+1:lemma:broth'
+2.156370 Air      b'lemma:Anaerobic'
+2.151046 Temp     b'lemma:43'
+2.123118 Temp     b'+1:lemma:\xc2\xb0c'
+2.116886 Gtype    b'lemma:\xce\xb4oxyr'
+2.111247 O        b'-1:lemma:0.3-0.35'
+2.110756 Gtype    b'lemma:\xce\xb4ompr'
+2.098031 O        b'+1:lemma:250'
+2.072829 OD       b'lemma:od450'
+2.054078 O        b'-1:lemma:l1'
+2.027132 O        b'postag:DT'
+2.020949 Technique b'+1:lemma:chip-exo'
+2.012421 Med      b'lemma:minimal'
+2.004375 Gtype    b'+1:lemma:flagtag'
+1.990269 O        b'-1:lemma:\xc2\xb0c'
+1.950886 O        b'+1:postag:RB'
+1.941939 Supp     b'+1:lemma:2'
+1.933357 O        b'lemma:culture'
+1.927257 O        b'-1:lemma:anaerobic'
+1.918285 O        b'+1:lemma:mid-log'
+1.906662 O        b'postag:NNS'
+1.903182 Gtype    b'lemma:deltaseqa'
+1.903182 Gtype    b'-1:lemma:old'
+1.889101 Gtype    b'lemma:ptac'
+1.886365 Gtype    b'-1:postag:VBG'
+1.879594 O        b'+1:lemma:chip-seq'
+1.877669 O        b'lemma:contain'
+1.875514 O        b'lemma:ml'
+1.873847 O        b'+1:lemma:43'
+1.872843 O        b'lemma:genotype/variation'
+1.866446 O        b'lemma:soxs'
+1.866446 O        b'lemma:soxr'
+1.865566 Gversion b'lemma:_'
+1.858956 Temp     b'-1:lemma:sample'
+1.836548 O        b'+1:postag:NNP'
+1.835787 O        b'lemma::'
+1.805360 Technique b'-1:lemma:rna-seq'
+1.803739 O        b'-1:lemma:into'
+1.801193 Supp     b'-1:lemma:mm'
+1.798395 Temp     b'lemma:37'
+1.798227 Technique b'-1:lemma:_'
+1.796930 Gtype    b'-1:lemma:rpob'
+1.786304 Air      b'-1:postag::'
+1.781423 Med      b'+1:lemma:+'
+1.773280 Supp     b'-1:lemma:\xc2\xb5m'
+1.770143 O        b'-1:lemma:phase'
+1.766358 Temp     b'-1:lemma:37'
+1.764495 O        b'lemma:condition'
+1.753857 O        b'lemma:argr'
+
+
+Top negative:
+0.000080 Gtype    b'+1:lemma:-rcb-'
+0.000058 O        b"lemma:'s"
+0.000058 O        b'postag:POS'
+0.000058 O        b'-1:lemma:manufacturer'
+0.000058 O        b'+1:lemma:instruction'
+0.000036 O        b'-1:lemma:0.1'
+0.000003 Air      b'+1:lemma:n2'
+0.000003 O        b'-1:lemma:4'
+-0.000081 O        b'+1:lemma:1/100'
+-0.000104 O        b'+1:lemma:m'
+-0.000105 O        b'-1:lemma:phosphate'
+-0.000227 O        b'-1:lemma:0.2'
+-0.000342 O        b'-1:lemma:with'
+-0.000398 Gversion b'-1:postag:NN'
+-0.000464 O        b'lemma:%'
+-0.001787 O        b'lemma:7.6'
+-0.001787 O        b'+1:lemma:;'
+-0.002156 Med      b'-1:postag:CD'
+-0.002253 O        b'lemma:;'
+-0.002253 O        b'-1:lemma:7.6'
+-0.002551 O        b'+1:lemma:c'
+-0.002951 O        b'+1:lemma:gadw'
+-0.004097 O        b'+1:lemma:gade'
+-0.008822 Gtype    b'+1:postag:CD'
+-0.009586 Med      b'postag:JJ'
+-0.010831 Agit     b'-1:postag:NN'
+-0.013524 O        b'+1:lemma:antibody'
+-0.014706 Anti     b'+1:postag:JJ'
+-0.015602 Supp     b'-1:postag:VBN'
+-0.020869 O        b'-1:postag:DT'
+-0.021186 Gtype    b'+1:lemma:\xe2\x88\x86'
+-0.025812 OD       b'postag:NN'
+-0.032647 Gtype    b'-1:postag:NNP'
+-0.035397 O        b'lemma:1m'
+-0.038554 O        b'+1:lemma:rep2'
+-0.041306 Gtype    b'-1:postag:NN'
+-0.042250 O        b'+1:lemma:95'
+-0.042668 O        b'-1:lemma:contain'
+-0.044065 Supp     b'-1:lemma:.'
+-0.044065 Supp     b'-1:postag:.'
+-0.055911 Supp     b'postag:NN'
+-0.056075 O        b'lemma:anaerobic'
+-0.061212 Agit     b'postag:NN'
+-0.062946 Supp     b'-1:lemma:;'
+-0.069294 O        b'+1:lemma:%'
+-0.071027 O        b'+1:lemma:~'
+-0.078046 O        b'+1:lemma:Aerobic'
+-0.079728 O        b'lemma:m'
+-0.082704 O        b'-1:lemma:250'
+-0.083986 O        b'lemma:150'
+-0.083986 O        b'+1:lemma:mg/ml'
+-0.093290 Gtype    b'postag:CD'
+-0.098235 Temp     b'postag:JJ'
+-0.102223 Supp     b'+1:postag:NNS'
+-0.108761 O        b'-1:lemma:of'
+-0.112579 O        b'lemma:nitrate'
+-0.112840 O        b'+1:lemma:-rrb-'
+-0.114513 O        b'-1:lemma:~'
+-0.115788 Supp     b'+1:postag:-RRB-'
+-0.126267 Gtype    b'+1:lemma:-rrb-'
+-0.133344 O        b'-1:lemma:chip-exo'
+-0.133967 O        b'+1:lemma:arginine'
+-0.142732 Air      b'postag:CD'
+-0.146065 O        b'-1:lemma:the'
+-0.160763 Supp     b'postag:CD'
+-0.162843 O        b'+1:lemma:for'
+-0.169917 Gtype    b'-1:lemma:mg1655'
+-0.174714 Gversion b'+1:postag:NN'
+-0.177235 O        b'lemma:dissolve'
+-0.186720 Air      b'-1:postag:JJ'
+-0.197341 Supp     b'+1:lemma:glucose'
+-0.197861 O        b'lemma:fructose'
+-0.199130 Med      b'+1:postag:IN'
+-0.212273 Supp     b'lemma:mm'
+-0.221938 O        b'lemma:soxs-8myc'
+-0.223055 O        b'lemma:nh4cl'
+-0.233773 Phase    b'-1:lemma:at'
+-0.236512 Gtype    b'-1:postag:CD'
+-0.242620 Technique b'-1:lemma::'
+-0.244933 O        b'+1:lemma:ph'
+-0.246714 O        b'lemma:medium'
+-0.248246 O        b'+1:postag:-LRB-'
+-0.257991 O        b'-1:lemma:from'
+-0.261029 O        b'+1:lemma:.'
+-0.261029 O        b'+1:postag:.'
+-0.263252 Med      b'-1:postag:NN'
+-0.265835 Supp     b'-1:lemma:dpd'
+-0.268481 O        b'lemma:\xe2\x88\x86'
+-0.270497 Med      b'postag:CD'
+-0.275308 O        b'lemma:m63'
+-0.280878 O        b'+1:lemma:_'
+-0.290836 O        b'lemma:c'
+-0.297682 Gtype    b'lemma:control'
+-0.298656 O        b'lemma:oxyr-8myc'
+-0.301488 O        b'-1:lemma:-lrb-'
+-0.302521 Supp     b'lemma:10'
+-0.313280 O        b'-1:lemma:g/l'
+-0.314256 Temp     b'-1:lemma:\xc2\xb0c'
+-0.320715 O        b'-1:lemma:cra'
+-0.339495 O        b'lemma:od600'
+-0.344406 O        b'lemma:37'
+-0.344682 O        b'lemma:purify'
+-0.346138 O        b'lemma:k-12'
+-0.356822 O        b'lemma:20'
+-0.371207 Med      b'+1:postag:NN'
+-0.380751 O        b'-1:lemma:1m'
+-0.381781 O        b'+1:lemma:fnr'
+-0.384037 Supp     b'postag:CC'
+-0.394501 Phase    b'+1:postag:NN'
+-0.399220 O        b'-1:postag:-LRB-'
+-0.413224 Air      b'-1:lemma:or'
+-0.419362 O        b'-1:lemma:iptg'
+-0.424394 O        b'-1:lemma:m'
+-0.428528 O        b'-1:lemma:37'
+-0.428627 O        b'-1:postag:IN'
+-0.429204 Supp     b'+1:lemma:dpd'
+-0.431781 Supp     b'+1:lemma:nacl'
+-0.443043 Supp     b'+1:lemma:rifampicin'
+-0.443466 O        b'lemma:minimal'
+-0.507877 O        b'-1:lemma:n2'
+-0.508911 Anti     b'+1:lemma:anti-fur'
+-0.509943 Gtype    b'+1:lemma:-lrb-'
+-0.514268 O        b'+1:postag:IN'
+-0.520329 Phase    b'postag:JJ'
+-0.539205 O        b'lemma:ph'
+-0.579756 Supp     b'-1:lemma:-lrb-'
+-0.580872 Supp     b'+1:postag:VBN'
+-0.593989 Technique b'-1:postag::'
+-0.601568 O        b'-1:lemma:final'
+-0.601806 O        b'+1:lemma:supplement'
+-0.607385 pH       b'postag:NN'
+-0.616692 Med      b'-1:postag:IN'
+-0.619922 O        b'lemma:mid-log'
+-0.636160 Supp     b'-1:postag:-LRB-'
+-0.639809 O        b'-1:lemma:dfnr'
+-0.664912 O        b'+1:postag:-RRB-'
+-0.668954 O        b'lemma:aerobically'
+-0.675066 Supp     b'-1:postag:NNP'
+-0.687148 O        b'-1:lemma:mm'
+-0.708508 O        b'+1:lemma:until'
+-0.783735 O        b'-1:postag::'
+-0.785090 Gtype    b'postag:VBG'
+-0.800517 O        b'-1:lemma:\xe2\x88\x86'
+-0.823546 O        b'lemma:wt'
+-0.853934 O        b'lemma:anaerobically'
+-0.856870 O        b'-1:lemma:until'
+-0.876446 O        b'-1:lemma:delta'
+-0.913178 O        b'-1:lemma:co2'
+-0.927211 O        b'+1:lemma:1m'
+-0.944621 Supp     b'+1:lemma:acetate'
+-0.951325 O        b'lemma:methanol'
+-0.963142 O        b'lemma:aerobic'
+-0.977606 Supp     b'+1:lemma:fructose'
+-0.979652 O        b'lemma:nitrogen'
+-1.005488 O        b'+1:lemma:g/l'
+-1.033787 O        b'+1:lemma:at'
+-1.033823 O        b'-1:lemma:rpob'
+-1.043256 O        b'lemma:2h'
+-1.043256 O        b'-1:lemma:additional'
+-1.063486 O        b'+1:lemma:2.0'
+-1.064526 O        b'lemma:media'
+-1.081067 O        b'+1:postag:VBG'
+-1.106410 O        b'-1:lemma:dissolve'
+-1.106410 O        b'+1:lemma:methanol'
+-1.110835 Temp     b'postag:NN'
+-1.163232 O        b'lemma:\xce\xb4fur'
+-1.176341 Air      b'postag:NN'
+-1.224656 O        b'-1:lemma:ph'
+-1.256518 O        b'lemma:of'
+-1.275712 Temp     b'+1:postag:IN'
+-1.278051 O        b'postag:VBP'
+-1.280734 O        b'lemma:30'
+-1.283875 Air      b'+1:postag:JJ'
+-1.295409 O        b'-1:lemma:30'
+-1.304660 O        b'+1:lemma:+'
+-1.311794 O        b'-1:lemma:1'
+-1.371031 O        b'-1:lemma:nsrr'
+-1.376731 O        b'-1:lemma:fresh'
+-1.379175 O        b'-1:lemma:ml'
+-1.408674 O        b'-1:lemma:sample'
+-1.445343 Anti     b'postag:NNP'
+-1.459575 Supp     b'+1:lemma:-lrb-'
+-1.506932 O        b'+1:lemma:mm'
+-1.510376 Supp     b'+1:postag:-LRB-'
+-1.529217 Supp     b'postag:JJ'
+-1.624777 Supp     b'+1:lemma:,'
+-1.624777 Supp     b'+1:postag:,'
+-1.649260 Phase    b'-1:postag:JJ'
+-1.668731 O        b'+1:lemma:in'
+-1.717464 O        b'lemma:0.3'
+-1.719606 OD       b'+1:postag:NN'
+-1.847089 O        b'-1:lemma:2'
+-1.871052 O        b'lemma:rifampicin'
+-1.883719 O        b'+1:lemma:1'
+-1.954580 O        b'-1:postag:VBG'
+-2.049608 O        b'-1:lemma:IP'
+-2.191282 O        b'-1:lemma:vol'
+-2.323780 O        b'+1:lemma:2'
+-3.283742 O        b'-1:lemma:_'
+-3.922389 O        b'-1:lemma::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.1779311060486324, 'c2': 0.0005619148999585256}
+best CV score:0.8815860410516979
+model size: 0.07M
+
+Flat F1: 0.7874835473429163
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.962     0.981        53
+       Temp      1.000     0.931     0.964        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.543     0.362     0.435        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.893     0.788     0.837        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.677     0.799     0.733       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.808     0.778     0.787       451
+
+
+Top likely transitions:
+Agit   -> Agit    7.599672
+Temp   -> Temp    6.866268
+OD     -> OD      6.223914
+Med    -> Med     6.223896
+Anti   -> Anti    5.733249
+Supp   -> Supp    5.501969
+Phase  -> Phase   5.255937
+Air    -> Air     5.242444
+Gversion -> Gversion 4.759517
+Technique -> Technique 4.572796
+Gtype  -> Gtype   4.408618
+pH     -> pH      4.148766
+O      -> O       3.770155
+O      -> Technique 1.394833
+Air    -> O       0.934701
+O      -> Supp    0.603143
+Gtype  -> Supp    0.602203
+O      -> Temp    0.531294
+O      -> Gtype   0.244043
+Substrain -> Gtype   0.178777
+Temp   -> O       0.116666
+O      -> Anti    0.073374
+Technique -> Air     0.057205
+O      -> Phase   0.016593
+Med    -> O       0.014656
+O      -> OD      0.003771
+O      -> pH      0.001976
+Anti   -> O       -0.000356
+Phase  -> O       -0.013827
+Supp   -> O       -0.037801
+Gversion -> O       -0.118955
+OD     -> O       -0.146201
+Air    -> Temp    -0.162047
+O      -> Med     -0.221356
+Gtype  -> Anti    -0.235366
+OD     -> Air     -0.430187
+Technique -> O       -0.658505
+Supp   -> Med     -0.680587
+O      -> Air     -1.100972
+Gtype  -> O       -1.334900
+Med    -> Supp    -1.533125
+Substrain -> O       -2.088700
+
+
+Top unlikely transitions:
+Agit   -> Agit    7.599672
+Temp   -> Temp    6.866268
+OD     -> OD      6.223914
+Med    -> Med     6.223896
+Anti   -> Anti    5.733249
+Supp   -> Supp    5.501969
+Phase  -> Phase   5.255937
+Air    -> Air     5.242444
+Gversion -> Gversion 4.759517
+Technique -> Technique 4.572796
+Gtype  -> Gtype   4.408618
+pH     -> pH      4.148766
+O      -> O       3.770155
+O      -> Technique 1.394833
+Air    -> O       0.934701
+O      -> Supp    0.603143
+Gtype  -> Supp    0.602203
+O      -> Temp    0.531294
+O      -> Gtype   0.244043
+Substrain -> Gtype   0.178777
+Temp   -> O       0.116666
+O      -> Anti    0.073374
+Technique -> Air     0.057205
+O      -> Phase   0.016593
+Med    -> O       0.014656
+O      -> OD      0.003771
+O      -> pH      0.001976
+Anti   -> O       -0.000356
+Phase  -> O       -0.013827
+Supp   -> O       -0.037801
+Gversion -> O       -0.118955
+OD     -> O       -0.146201
+Air    -> Temp    -0.162047
+O      -> Med     -0.221356
+Gtype  -> Anti    -0.235366
+OD     -> Air     -0.430187
+Technique -> O       -0.658505
+Supp   -> Med     -0.680587
+O      -> Air     -1.100972
+Gtype  -> O       -1.334900
+Med    -> Supp    -1.533125
+Substrain -> O       -2.088700
+
+
+Top positive:
+10.204453 Air      b'word[:2]:Ae'
+7.959700 Strain   b'+1:lemma:substr'
+7.931315 Gtype    b'word[:1]:\xce\x94'
+7.211296 O        b'lemma:2'
+6.951384 Technique b'word[:2]:Ch'
+6.897705 Air      b'word[:2]:An'
+6.430948 O        b'word[:2]:re'
+6.304459 Supp     b'+1:lemma:\xc2\xb5m'
+6.277176 O        b'lemma:3'
+6.259509 O        b'-1:lemma:tag'
+5.784951 Phase    b'lemma:stationary'
+5.680889 O        b'lemma:1'
+5.565991 Air      b'lemma:anaerobic'
+5.496150 O        b'lemma:-'
+5.307683 Phase    b'lemma:mid-log'
+5.051659 O        b'lemma:a'
+4.964154 O        b'+1:lemma:pq'
+4.949696 O        b'lemma:with'
+4.849415 Gversion b'-1:lemma:nc'
+4.834323 Substrain b'word[:2]:MG'
+4.807181 O        b'lemma:_'
+4.807181 O        b'word[:1]:_'
+4.804254 Supp     b'-1:lemma:Cra'
+4.759024 Gtype    b'lemma:wt'
+4.715524 Supp     b'lemma:Iron'
+4.715524 Supp     b'word[:2]:Ir'
+4.706542 Supp     b'lemma:arginine'
+4.646874 Supp     b'-1:lemma:vol'
+4.197413 O        b'word[:2]:Cr'
+4.195753 O        b'-1:lemma:lb'
+4.181423 Gtype    b'word[:2]:Fl'
+4.134022 OD       b'word[:1]:O'
+4.052226 Med      b'lemma:MOPS'
+4.052226 Med      b'word[:2]:MO'
+4.022958 pH       b'word[:2]:pH'
+3.975313 Temp     b'-1:lemma:sample'
+3.962014 Gversion b'lemma:chip-seq'
+3.951951 Phase    b'word[:2]:ex'
+3.931899 Supp     b'-1:lemma:with'
+3.883643 Gtype    b'lemma:arca8myc'
+3.879479 Supp     b'word[:2]:ni'
+3.856134 Temp     b'+1:lemma:in'
+3.810759 Gtype    b'-1:lemma:\xe2\x88\x86'
+3.789132 Supp     b'-1:lemma:+'
+3.786509 O        b'word[:2]:ha'
+3.757509 Gtype    b'word[:1]:d'
+3.684952 Supp     b'lemma:nacl'
+3.663349 O        b'word[:2]:Cu'
+3.647265 O        b'word[:2]:ge'
+3.618268 Technique b'word[:2]:RN'
+3.420924 Med      b'-1:lemma:ml'
+3.399171 O        b'lemma:.'
+3.399171 O        b'postag:.'
+3.399171 O        b'postag[:1]:.'
+3.295302 O        b'-1:lemma:0.3'
+3.233537 O        b'-1:lemma:glucose'
+3.232228 Anti     b'+1:lemma:antibody'
+3.166537 O        b'word[:1]:B'
+3.151800 Gtype    b'lemma:type'
+3.151800 Gtype    b'word[:2]:ty'
+3.074513 Supp     b'word[:1]:I'
+3.066493 O        b'word[:1]:G'
+3.049541 O        b'-1:lemma:into'
+2.995715 O        b'word[:2]:Rp'
+2.974033 Temp     b'-1:lemma:\xcf\x8332'
+2.939937 O        b'lemma:delta'
+2.929545 O        b'word[:1]:E'
+2.889138 Supp     b'lemma:acetate'
+2.884567 O        b'word[:1]:S'
+2.849582 Supp     b'lemma:pq'
+2.849582 Supp     b'word[:2]:PQ'
+2.796468 Med      b'+1:lemma:0.4'
+2.748041 Gtype    b'word[:2]:cr'
+2.715155 O        b'postag::'
+2.715155 O        b'postag[:1]::'
+2.711740 Gtype    b'word[:1]:w'
+2.648443 O        b'-1:lemma:0.3-0.35'
+2.642979 Temp     b'-1:lemma:43'
+2.605602 Supp     b'+1:lemma:1'
+2.584485 Med      b'word[:1]:M'
+2.543511 Gtype    b'lemma:nsrr'
+2.543511 Gtype    b'word[:2]:Ns'
+2.528316 Supp     b'+1:lemma:mm'
+2.526101 Gtype    b'word[:1]:W'
+2.518551 Supp     b'+1:lemma:2'
+2.493071 Technique b'lemma:ChIP-exo'
+2.492470 Gtype    b'word[:2]:PK'
+2.417633 O        b'lemma:ompr'
+2.417633 O        b'word[:2]:Om'
+2.403384 O        b'lemma:purr'
+2.399480 Air      b'-1:lemma:ChIP-Seq'
+2.385701 Phase    b'-1:lemma:until'
+2.383512 Gtype    b'word[:1]:t'
+2.374150 Gtype    b'-1:lemma:rpob'
+2.368626 O        b'word[:1]:R'
+2.336211 Supp     b'-1:lemma:final'
+2.331497 Gversion b'word[:2]:00'
+2.322056 O        b'+1:lemma:od600'
+2.317008 O        b'lemma:Custom'
+2.307666 Gversion b'lemma:asm584v2'
+2.307666 Gversion b'word[:2]:AS'
+2.305354 Med      b'lemma:L'
+2.305354 Med      b'+1:lemma:broth'
+2.285067 Supp     b'lemma:sodium'
+2.270312 O        b'postag:CC'
+2.270312 O        b'postag[:2]:CC'
+2.257396 Air      b'word[:1]:a'
+2.233372 Med      b'+1:lemma:g/l'
+2.223950 Supp     b'+1:lemma:phosphate'
+2.222780 O        b'+1:lemma:mid-log'
+2.221972 O        b'-1:lemma:type'
+2.203153 O        b'word[:1]:C'
+2.199367 Med      b'+1:lemma:2.0'
+2.195464 Gversion b'lemma:nc'
+2.195464 Gversion b'word[:2]:NC'
+2.192101 O        b'+1:postag:RB'
+2.162744 O        b'lemma:b'
+2.159358 Air      b'-1:lemma:co2'
+2.157857 Supp     b'+1:lemma:1m'
+2.150708 O        b'-1:lemma:Aerobic'
+2.149348 Air      b'+1:postag:IN'
+2.138880 Anti     b'hGreek'
+2.137978 O        b'+1:lemma:43'
+2.122867 O        b'postag:IN'
+2.122867 O        b'postag[:1]:I'
+2.122867 O        b'postag[:2]:IN'
+2.118447 Supp     b'word[:2]:Fe'
+2.105815 Anti     b'word[:2]:an'
+2.075029 Supp     b'+1:lemma:and'
+2.072990 Gtype    b'symb'
+2.065880 O        b'+1:postag:NNP'
+2.062690 O        b'+1:lemma:250'
+2.020409 Gtype    b'-1:postag:VBG'
+2.013701 Gtype    b'lemma:flag-tag'
+2.013701 Gtype    b'-1:lemma:c-terminal'
+1.989019 Substrain b'word[:1]:M'
+1.972823 Agit     b'+1:lemma:rpm'
+1.953612 Supp     b'lemma:Fe'
+1.940845 O        b'lemma:chip'
+1.936105 Med      b'word[:1]:L'
+1.928291 Supp     b'lemma:rifampicin'
+1.926687 Supp     b'word[:2]:gl'
+1.915939 Supp     b'word[:2]:ri'
+1.913797 Gversion b'lemma:.2'
+1.913797 Gversion b'-1:lemma:u00096'
+1.913797 Gversion b'word[:2]:.2'
+1.910063 Supp     b'lemma:fructose'
+1.909338 Supp     b'word[:2]:30'
+1.896702 O        b'lemma:growth'
+1.895943 Supp     b'postag:VBP'
+1.892910 Gtype    b'+1:lemma:type'
+1.889532 O        b'lemma:0.4'
+1.871889 Gtype    b'lemma:\xe2\x88\x86'
+1.871889 Gtype    b'word[:1]:\xe2\x88\x86'
+1.871050 O        b'lemma:at'
+1.869248 O        b'word[:2]:In'
+1.859503 Gtype    b'word[:1]:F'
+1.851083 Supp     b'word[:2]:ac'
+1.849424 O        b'-1:lemma:anaerobic'
+1.842373 O        b'-1:lemma:media'
+1.841449 Supp     b'-1:postag:CC'
+1.836269 O        b'lemma:ml'
+1.836269 O        b'word[:2]:ml'
+1.828600 O        b'word[:1]:i'
+1.828258 Gtype    b'word[:1]:f'
+1.827189 Technique b'word[:1]:R'
+1.813413 O        b'-1:lemma:mg1655'
+1.805298 Temp     b'lemma:43'
+1.805298 Temp     b'word[:2]:43'
+1.800703 Med      b'lemma:broth'
+1.800703 Med      b'-1:lemma:L'
+1.800703 Med      b'word[:2]:br'
+1.795613 O        b'word[:1]:u'
+1.759212 O        b'postag[:1]:V'
+1.759212 O        b'postag[:2]:VB'
+1.754974 Gtype    b'-1:lemma:_'
+1.745663 Supp     b'word[:1]:1'
+1.723877 Supp     b'lemma:Leu'
+1.723877 Supp     b'word[:2]:Le'
+1.721581 Technique b'lemma:chipseq'
+1.707824 Phase    b'+1:postag:NNS'
+1.696873 Gtype    b'-1:lemma:vector'
+1.690920 Air      b'word[:2]:an'
+1.681189 Gtype    b'word[:2]:Ar'
+1.652222 O        b'+1:postag:VBZ'
+1.635512 O        b'+1:lemma:30'
+1.623155 Med      b'+1:lemma:-lrb-'
+1.621988 O        b'-1:lemma:stpa'
+1.619973 Substrain b'+1:lemma:phtpg'
+1.619895 Vess     b'lemma:flask'
+1.619895 Vess     b'-1:lemma:warm'
+1.613546 Supp     b'+1:lemma:min'
+1.611072 Vess     b'word[:2]:fl'
+1.610373 O        b'+1:postag:VBN'
+1.603394 Air      b'+1:lemma:until'
+1.591021 Temp     b'-1:lemma:degree'
+1.586003 O        b'word[:1]:-'
+1.583870 O        b'-1:lemma:phase'
+1.582561 Supp     b'lemma:2h'
+1.582561 Supp     b'-1:lemma:additional'
+
+
+Top negative:
+-0.059848 OD       b'postag[:1]:N'
+-0.059848 OD       b'postag[:2]:NN'
+-0.059922 O        b'-1:lemma:phosphate'
+-0.060173 Technique b'-1:lemma::'
+-0.060454 O        b'word[:1]:2'
+-0.061725 OD       b'+1:lemma:0.4'
+-0.062364 Technique b'postag[:1]:N'
+-0.062364 Technique b'postag[:2]:NN'
+-0.063877 Gtype    b'word[:1]:-'
+-0.063940 O        b'-1:lemma:-lrb-'
+-0.065863 Supp     b'-1:postag:NN'
+-0.066673 OD       b'lemma:0.4'
+-0.067069 O        b'word[:2]:fi'
+-0.068494 O        b'word[:1]:.'
+-0.070950 Air      b'postag:CC'
+-0.070950 Air      b'postag[:2]:CC'
+-0.078141 O        b'word[:1]:g'
+-0.079781 Supp     b'word[:2]:10'
+-0.085611 O        b'-1:postag:-LRB-'
+-0.085744 O        b'lemma:minimal'
+-0.086337 O        b'word[:1]:d'
+-0.087082 Supp     b'word[:2]:vo'
+-0.091121 Gtype    b'+1:postag:NN'
+-0.094589 Supp     b'postag:CD'
+-0.094589 Supp     b'postag[:2]:CD'
+-0.098403 Temp     b'-1:lemma:\xc2\xb0c'
+-0.099548 O        b'+1:postag:-LRB-'
+-0.099870 O        b'+1:lemma:rep2'
+-0.103006 O        b'+1:lemma:1/100'
+-0.107449 Gversion b'+1:postag:NN'
+-0.108265 Temp     b'postag[:1]:N'
+-0.108265 Temp     b'postag[:2]:NN'
+-0.108397 Supp     b'-1:lemma:.'
+-0.108397 Supp     b'-1:postag:.'
+-0.109037 Gtype    b'postag[:1]:V'
+-0.109037 Gtype    b'postag[:2]:VB'
+-0.109312 Supp     b'lemma:10'
+-0.113057 O        b'+1:lemma:%'
+-0.120224 Phase    b'-1:lemma:at'
+-0.130743 O        b'+1:postag:CD'
+-0.133476 Supp     b'lemma:,'
+-0.133476 Supp     b'postag:,'
+-0.133476 Supp     b'word[:1]:,'
+-0.133476 Supp     b'postag[:1]:,'
+-0.136463 Air      b'hUpper'
+-0.136463 Air      b'hLower'
+-0.150682 O        b'word[:2]:OD'
+-0.151965 O        b'-1:lemma:rpob'
+-0.154235 O        b'+1:lemma:-rrb-'
+-0.158600 Gtype    b'-1:lemma:mg1655'
+-0.164950 O        b'word[:1]:M'
+-0.174920 Air      b'+1:postag:-LRB-'
+-0.176710 Med      b'lemma:m9'
+-0.176710 Med      b'word[:2]:M9'
+-0.178022 Med      b'postag[:1]:C'
+-0.180125 O        b'-1:lemma:of'
+-0.181701 Phase    b'+1:postag:NN'
+-0.183270 Supp     b'postag[:1]:C'
+-0.184142 Med      b'-1:lemma:m9'
+-0.185330 OD       b'lemma:od600'
+-0.194943 O        b'word[:2]:ae'
+-0.196910 Technique b'-1:postag::'
+-0.198688 Supp     b'word[:1]:C'
+-0.198890 Gtype    b'-1:lemma:-lrb-'
+-0.199882 pH       b'postag[:1]:N'
+-0.199882 pH       b'postag[:2]:NN'
+-0.200375 Air      b'-1:lemma:grow'
+-0.201809 O        b'lemma:2h'
+-0.201809 O        b'-1:lemma:additional'
+-0.201809 O        b'word[:2]:2h'
+-0.205749 Supp     b'+1:lemma:10'
+-0.216714 Gtype    b'+1:postag:CD'
+-0.224065 O        b'+1:postag:-RRB-'
+-0.226472 O        b'lemma:co2'
+-0.226472 O        b'word[:2]:CO'
+-0.232140 Air      b'-1:postag:VBN'
+-0.241573 Air      b'-1:postag:CC'
+-0.242963 Air      b'symb'
+-0.250464 Phase    b'postag[:1]:J'
+-0.250464 Phase    b'postag[:2]:JJ'
+-0.270255 O        b'lemma:aerobically'
+-0.270737 O        b'lemma:media'
+-0.271988 O        b'word[:2]:gl'
+-0.275321 O        b'+1:lemma:supplement'
+-0.276089 O        b'-1:postag:IN'
+-0.281202 O        b'word[:2]:ce'
+-0.282921 O        b'-1:lemma:250'
+-0.284342 Air      b'+1:postag:JJ'
+-0.285982 O        b'lemma:of'
+-0.285982 O        b'word[:2]:of'
+-0.299888 Supp     b'word[:2]:an'
+-0.300445 O        b'word[:1]:F'
+-0.311626 O        b'+1:lemma:for'
+-0.312645 Phase    b'postag:JJ'
+-0.314439 Temp     b'postag:NN'
+-0.318498 O        b'+1:lemma:mm'
+-0.321300 Supp     b'-1:lemma:-lrb-'
+-0.328758 O        b'lemma:1m'
+-0.328758 O        b'word[:2]:1M'
+-0.333791 O        b'-1:lemma:sodium'
+-0.336871 Med      b'+1:postag:NN'
+-0.348304 Gtype    b'+1:lemma:-lrb-'
+-0.350520 Med      b'-1:postag:CD'
+-0.352516 O        b'lemma:37'
+-0.352516 O        b'word[:2]:37'
+-0.362946 O        b'+1:lemma:.'
+-0.362946 O        b'+1:postag:.'
+-0.363307 Med      b'-1:postag:NN'
+-0.370538 Air      b'postag:NN'
+-0.375679 Supp     b'-1:postag:-LRB-'
+-0.378467 O        b'+1:postag:VBG'
+-0.380556 O        b'-1:lemma:ml'
+-0.380799 O        b'-1:lemma:final'
+-0.381345 O        b'+1:lemma:ph'
+-0.383546 O        b'-1:lemma:n2'
+-0.385967 O        b'lemma:mid-log'
+-0.387867 Air      b'postag[:1]:N'
+-0.387867 Air      b'postag[:2]:NN'
+-0.397798 Supp     b'postag:JJ'
+-0.400326 Supp     b'postag[:1]:J'
+-0.400326 Supp     b'postag[:2]:JJ'
+-0.407602 O        b'-1:lemma:mm'
+-0.431970 Med      b'-1:postag:IN'
+-0.434055 O        b'-1:lemma:1m'
+-0.445787 Temp     b'hGreek'
+-0.452175 Med      b'symb'
+-0.460332 O        b'-1:lemma:IP'
+-0.467068 O        b'-1:lemma:37'
+-0.478293 O        b'+1:lemma:phosphate'
+-0.537372 O        b'word[:2]:ni'
+-0.545269 O        b'-1:lemma:until'
+-0.548531 O        b'word[:2]:0.'
+-0.623964 O        b'word[:1]:0'
+-0.624246 Supp     b'-1:postag:NNP'
+-0.632176 O        b'lemma:c'
+-0.637617 O        b'+1:postag:IN'
+-0.640663 OD       b'hUpper'
+-0.640663 OD       b'hLower'
+-0.643238 O        b'lemma:sodium'
+-0.678960 O        b'word[:2]:pH'
+-0.686405 O        b'word[:2]:ri'
+-0.690472 Air      b'-1:lemma:or'
+-0.706445 O        b'-1:lemma:delta'
+-0.723520 O        b'+1:lemma:g/l'
+-0.736143 Supp     b'hGreek'
+-0.746481 O        b'lemma:methanol'
+-0.769671 O        b'-1:lemma:nsrr'
+-0.784252 Air      b'-1:postag:JJ'
+-0.788281 Med      b'+1:postag:IN'
+-0.822122 Supp     b'+1:lemma:rifampicin'
+-0.838923 Supp     b'symb'
+-0.852449 Agit     b'symb'
+-0.867354 O        b'-1:lemma:co2'
+-0.874419 O        b'-1:lemma:30'
+-0.894271 O        b'word[:2]:me'
+-0.895822 O        b'word[:2]:mg'
+-0.898915 O        b'-1:lemma:1'
+-0.904279 O        b'lemma:0.3'
+-0.910372 O        b'+1:lemma:at'
+-0.910865 Phase    b'hUpper'
+-0.910865 Phase    b'hLower'
+-1.005990 O        b'-1:postag::'
+-1.027364 O        b'+1:lemma:1m'
+-1.029400 O        b'-1:lemma:dissolve'
+-1.029400 O        b'+1:lemma:methanol'
+-1.037454 Gtype    b'lemma:delta'
+-1.044796 O        b'-1:lemma:fresh'
+-1.052334 O        b'+1:lemma:until'
+-1.062610 O        b'word[:1]:N'
+-1.076834 O        b'word[:2]:fl'
+-1.106973 O        b'word[:2]:30'
+-1.108666 Phase    b'-1:postag:JJ'
+-1.184488 Gtype    b'+1:lemma:-rrb-'
+-1.190874 Agit     b'hUpper'
+-1.190874 Agit     b'hLower'
+-1.198537 Anti     b'postag:NNP'
+-1.237479 Technique b'postag:NN'
+-1.254724 Gtype    b'word[:1]:C'
+-1.285720 O        b'+1:lemma:2.0'
+-1.319520 O        b'-1:lemma:cra'
+-1.367368 O        b'-1:lemma:sample'
+-1.499105 O        b'-1:postag:VBG'
+-1.499318 O        b'+1:lemma:in'
+-1.578496 O        b'-1:lemma:ph'
+-1.679574 OD       b'+1:postag:NN'
+-1.738083 O        b'word[:2]:Ch'
+-1.860176 O        b'+1:lemma:1'
+-1.912082 O        b'lemma:rifampicin'
+-1.975467 Supp     b'+1:lemma:-lrb-'
+-2.013762 Supp     b'+1:postag:-LRB-'
+-2.120131 O        b'+1:lemma:2'
+-2.321555 Supp     b'+1:lemma:,'
+-2.321555 Supp     b'+1:postag:,'
+-2.461859 O        b'word[:1]:P'
+-2.555572 Temp     b'+1:postag:IN'
+-2.561836 O        b'-1:lemma:2'
+-3.242599 O        b'postag:VBP'
+-3.584101 O        b'-1:lemma:vol'
+-5.325671 O        b'-1:lemma:_'
+-5.823992 O        b'-1:lemma::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.13330184503096318, 'c2': 0.015952382909212963}
+best CV score:0.8603877155764311
+model size: 0.08M
+
+Flat F1: 0.7890643233991025
+             precision    recall  f1-score   support
+
+         OD      0.857     0.818     0.837        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.943     0.971        53
+       Temp      1.000     0.690     0.816        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.543     0.362     0.435        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.868     0.776     0.820        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.779     0.813     0.796       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.826     0.763     0.789       451
+
+
+Top likely transitions:
+Agit   -> Agit    6.893287
+Temp   -> Temp    6.021557
+Med    -> Med     5.295918
+OD     -> OD      5.124787
+Anti   -> Anti    5.077725
+Phase  -> Phase   4.805244
+Supp   -> Supp    4.676680
+Gversion -> Gversion 4.270632
+O      -> O       4.151009
+Gtype  -> Gtype   4.130084
+Air    -> Air     4.099435
+Technique -> Technique 3.483421
+pH     -> pH      2.997159
+Substrain -> Gtype   1.124559
+O      -> Technique 1.003751
+O      -> Supp    0.947717
+Air    -> O       0.873831
+Temp   -> O       0.565967
+O      -> Temp    0.479055
+O      -> Gtype   0.462638
+Gtype  -> Air     0.167055
+Supp   -> O       0.160803
+Technique -> Air     0.116967
+O      -> OD      0.109397
+Med    -> O       0.103673
+O      -> Phase   0.083258
+Gtype  -> Supp    0.074101
+OD     -> O       0.051003
+Phase  -> O       0.029928
+Strain -> O       0.000886
+O      -> Anti    0.000637
+O      -> Gversion 0.000062
+Anti   -> Air     -0.001399
+Phase  -> Supp    -0.014135
+Gtype  -> Gversion -0.023045
+Technique -> Gtype   -0.145953
+Supp   -> Technique -0.164756
+Technique -> pH      -0.188040
+Supp   -> Air     -0.262229
+Gtype  -> Technique -0.360196
+OD     -> Air     -0.397656
+Air    -> Phase   -0.403726
+Gtype  -> Med     -0.439722
+Gversion -> O       -0.476476
+Air    -> Supp    -0.501806
+Gtype  -> Anti    -0.567560
+Supp   -> Gtype   -0.583004
+Air    -> Temp    -0.652068
+Technique -> O       -0.816523
+O      -> Air     -0.975032
+
+
+Top unlikely transitions:
+Anti   -> Anti    5.077725
+Phase  -> Phase   4.805244
+Supp   -> Supp    4.676680
+Gversion -> Gversion 4.270632
+O      -> O       4.151009
+Gtype  -> Gtype   4.130084
+Air    -> Air     4.099435
+Technique -> Technique 3.483421
+pH     -> pH      2.997159
+Substrain -> Gtype   1.124559
+O      -> Technique 1.003751
+O      -> Supp    0.947717
+Air    -> O       0.873831
+Temp   -> O       0.565967
+O      -> Temp    0.479055
+O      -> Gtype   0.462638
+Gtype  -> Air     0.167055
+Supp   -> O       0.160803
+Technique -> Air     0.116967
+O      -> OD      0.109397
+Med    -> O       0.103673
+O      -> Phase   0.083258
+Gtype  -> Supp    0.074101
+OD     -> O       0.051003
+Phase  -> O       0.029928
+Strain -> O       0.000886
+O      -> Anti    0.000637
+O      -> Gversion 0.000062
+Anti   -> Air     -0.001399
+Phase  -> Supp    -0.014135
+Gtype  -> Gversion -0.023045
+Technique -> Gtype   -0.145953
+Supp   -> Technique -0.164756
+Technique -> pH      -0.188040
+Supp   -> Air     -0.262229
+Gtype  -> Technique -0.360196
+OD     -> Air     -0.397656
+Air    -> Phase   -0.403726
+Gtype  -> Med     -0.439722
+Gversion -> O       -0.476476
+Air    -> Supp    -0.501806
+Gtype  -> Anti    -0.567560
+Supp   -> Gtype   -0.583004
+Air    -> Temp    -0.652068
+Technique -> O       -0.816523
+O      -> Air     -0.975032
+Gtype  -> O       -1.058292
+Supp   -> Med     -1.159468
+Med    -> Supp    -1.481426
+Substrain -> O       -1.534528
+
+
+Top positive:
+6.792977 Technique b'lemma[:2]:Ch'
+6.185501 O        b'lemma:2'
+5.372196 O        b'lemma:3'
+5.171879 O        b'-1:lemma:tag'
+5.142744 Gtype    b'lemma[:1]:\xce\xb4'
+4.788508 O        b'lemma:1'
+4.739414 O        b'postag:IN'
+4.709882 O        b'lemma:-'
+4.462687 Technique b'lemma:chipseq'
+4.337449 O        b'lemma[:2]:re'
+4.272091 Supp     b'+1:lemma:\xc2\xb5m'
+4.219425 O        b'lemma:with'
+4.162550 O        b'+1:lemma:pq'
+4.046798 O        b'lemma:_'
+4.046798 O        b'lemma[:1]:_'
+4.040972 Gtype    b'-1:lemma:\xe2\x88\x86'
+4.018468 Phase    b'lemma:mid-log'
+3.950059 Air      b'lemma[:2]:ae'
+3.882373 O        b'postag::'
+3.866328 Supp     b'lemma:Iron'
+3.866328 Supp     b'lemma[:2]:Ir'
+3.865451 O        b'lemma:b'
+3.666419 O        b'lemma:a'
+3.658095 Substrain b'lemma[:2]:mg'
+3.641844 Air      b'-1:lemma:ChIP-Seq'
+3.630211 Supp     b'-1:lemma:Cra'
+3.616609 O        b'postag:CC'
+3.541072 Air      b'lemma:anaerobic'
+3.460006 Air      b'lemma[:2]:an'
+3.437202 O        b'lemma:rpob'
+3.400149 Gtype    b'lemma:arca8myc'
+3.376119 Strain   b'+1:lemma:substr'
+3.310669 O        b'lemma:.'
+3.310669 O        b'postag:.'
+3.265211 O        b'-1:lemma:lb'
+3.262791 Supp     b'-1:lemma:with'
+3.123788 Supp     b'-1:lemma:vol'
+3.100190 Air      b'-1:lemma:-'
+3.079730 Supp     b'lemma:pq'
+3.079730 Supp     b'lemma[:2]:pq'
+3.061798 Agit     b'+1:lemma:rpm'
+3.060071 O        b'-1:lemma:0.3'
+2.985771 Supp     b'lemma:arginine'
+2.958596 O        b'lemma[:1]:h'
+2.939765 O        b'lemma[:2]:ge'
+2.920828 O        b'lemma:delta'
+2.918295 Phase    b'lemma:stationary'
+2.910332 Supp     b'-1:lemma:+'
+2.845649 Technique b'lemma[:2]:ch'
+2.823670 Gversion b'lemma:chip-seq'
+2.791251 O        b'postag:VBN'
+2.770882 Anti     b'+1:lemma:antibody'
+2.759206 Gtype    b'lemma:type'
+2.759206 Gtype    b'lemma[:2]:ty'
+2.752479 Temp     b'+1:lemma:in'
+2.715434 Med      b'-1:lemma:ml'
+2.707247 Air      b'lemma:Aerobic'
+2.707247 Air      b'lemma[:2]:Ae'
+2.706748 Med      b'+1:lemma:0.4'
+2.704634 O        b'-1:lemma:glucose'
+2.684854 Phase    b'lemma[:2]:ex'
+2.662573 Anti     b'lemma[:2]:an'
+2.630158 Technique b'lemma[:2]:rn'
+2.608017 Supp     b'lemma:acetate'
+2.554332 OD       b'lemma[:1]:o'
+2.549906 Gtype    b'lemma:fnr8myc'
+2.524063 O        b'-1:lemma:0.3-0.35'
+2.521537 O        b'-1:lemma:Aerobic'
+2.508216 Supp     b'lemma:rifampicin'
+2.505724 O        b'lemma:ompr'
+2.499756 Supp     b'lemma[:2]:ri'
+2.491716 O        b'lemma:chip'
+2.488425 Supp     b'-1:lemma:final'
+2.473021 Gtype    b'lemma[:2]:cr'
+2.448300 Med      b'lemma:MOPS'
+2.448300 Med      b'lemma[:1]:M'
+2.448300 Med      b'lemma[:2]:MO'
+2.444945 Supp     b'+1:lemma:1'
+2.444634 Gtype    b'lemma:wt'
+2.444634 Gtype    b'lemma[:2]:wt'
+2.439447 Gtype    b'lemma[:2]:ar'
+2.423220 Gtype    b'lemma[:2]:pk'
+2.411016 Technique b'lemma[:1]:C'
+2.409772 O        b'postag:DT'
+2.401919 Supp     b'+1:lemma:mm'
+2.397549 Supp     b'-1:lemma:sodium'
+2.386531 Agit     b'lemma:rpm'
+2.384742 Med      b'lemma:broth'
+2.384742 Med      b'-1:lemma:L'
+2.384742 Med      b'lemma[:2]:br'
+2.380245 Supp     b'lemma[:1]:I'
+2.354434 O        b'lemma[:1]:C'
+2.351237 Technique b'-1:lemma:input'
+2.341179 Air      b'postag:RB'
+2.337517 O        b'-1:lemma:into'
+2.316952 Gtype    b'lemma[:2]:de'
+2.308227 Gversion b'lemma:asm584v2'
+2.304126 Gtype    b'lemma:nsrr'
+2.304126 Gtype    b'lemma[:2]:ns'
+2.302775 Gversion b'lemma[:2]:as'
+2.247462 Gtype    b'lemma[:1]:W'
+2.232742 Supp     b'lemma[:2]:ni'
+2.228857 Gtype    b'-1:lemma:_'
+2.228364 Med      b'lemma:L'
+2.228364 Med      b'+1:lemma:broth'
+2.215606 Gtype    b'+1:lemma:type'
+2.215192 Supp     b'lemma:fructose'
+2.213388 O        b'-1:lemma:ChIP-exo'
+2.205310 Gversion b'lemma[:2]:00'
+2.189511 O        b'lemma:Custom'
+2.189511 O        b'lemma[:2]:Cu'
+2.189327 Gversion b'lemma:nc'
+2.189327 Gversion b'lemma[:2]:nc'
+2.187007 Anti     b'lemma:none'
+2.170324 O        b'+1:lemma:or'
+2.165483 Phase    b'lemma[:1]:e'
+2.157215 Air      b'lemma[:1]:a'
+2.155510 O        b'+1:lemma:acetate'
+2.137294 O        b'-1:lemma:phase'
+2.120304 O        b'lemma[:2]:om'
+2.109931 Temp     b'-1:lemma:43'
+2.093355 pH       b'+1:postag:CD'
+2.087626 O        b'lemma[:1]:e'
+2.082218 Gtype    b'+1:lemma::'
+2.080609 O        b'+1:lemma:mid-log'
+2.064412 O        b'-1:lemma:type'
+2.055018 Temp     b'-1:lemma:sample'
+2.048893 Temp     b'-1:lemma:\xcf\x8332'
+2.048779 O        b'+1:lemma:od600'
+2.037410 Med      b'+1:lemma:2.0'
+2.035956 O        b'+1:postag:NNP'
+2.030314 O        b'+1:postag:RB'
+2.027123 Gtype    b'lemma[:1]:w'
+2.011116 O        b'-1:lemma:anaerobic'
+2.006058 Gtype    b'lemma[:1]:f'
+1.994696 pH       b'lemma[:2]:ph'
+1.971101 Supp     b'lemma:no3'
+1.963975 Technique b'+1:lemma:rna-seq'
+1.963032 O        b'lemma:purr'
+1.954191 O        b'lemma:Cra'
+1.953081 Gtype    b'lemma:flag-tag'
+1.953081 Gtype    b'-1:lemma:c-terminal'
+1.929362 Technique b'+1:lemma:chip-exo'
+1.926848 Med      b'lemma[:1]:m'
+1.913449 Substrain b'lemma[:1]:m'
+1.912657 Gtype    b'-1:lemma:vector'
+1.903374 Gtype    b'lemma:\xe2\x88\x86'
+1.903374 Gtype    b'lemma[:1]:\xe2\x88\x86'
+1.901605 O        b'lemma[:2]:Cr'
+1.900522 Supp     b'lemma[:2]:gl'
+1.899158 O        b'lemma[:1]:s'
+1.875620 O        b'postag:VBG'
+1.860683 O        b'lemma:n'
+1.859831 Strain   b'lemma:k-12'
+1.859831 Strain   b'lemma[:2]:k-'
+1.859641 Supp     b'lemma[:2]:ac'
+1.834220 Supp     b'lemma:nacl'
+1.834220 Supp     b'lemma[:2]:na'
+1.829854 Supp     b'+1:lemma:2'
+1.820248 Strain   b'lemma[:1]:k'
+1.810126 Temp     b'lemma:43'
+1.810126 Temp     b'lemma[:2]:43'
+1.789121 Gtype    b'+1:lemma:with'
+1.787780 Gversion b'-1:lemma:nc'
+1.784140 Med      b'-1:lemma:fresh'
+1.776852 Gtype    b'-1:postag:VBG'
+1.769935 Supp     b'lemma:Leu'
+1.769935 Supp     b'lemma[:2]:Le'
+1.761067 Gtype    b'symb'
+1.756726 O        b'-1:lemma:stpa'
+1.755310 Phase    b'-1:lemma:until'
+1.753083 Supp     b'-1:postag:CC'
+1.751530 Anti     b'-1:lemma::'
+1.746658 O        b'lemma:argr'
+1.741299 O        b'lemma:\xcf\x8332'
+1.741299 O        b'lemma[:1]:\xcf\x83'
+1.741299 O        b'lemma[:2]:\xcf\x833'
+1.735808 Supp     b'lemma:Fe'
+1.735808 Supp     b'lemma[:2]:Fe'
+1.734847 Anti     b'hGreek'
+1.731060 Gtype    b'-1:lemma:knock-out'
+1.724076 O        b'-1:lemma:aerobically'
+1.721770 O        b'lemma:A'
+1.714736 O        b'lemma:0.4'
+1.713906 Gtype    b'lemma[:1]:t'
+1.706889 Air      b'+1:postag:IN'
+1.699701 Supp     b'lemma:glucose'
+1.698973 O        b'lemma:chip-arca'
+1.681807 O        b'+1:lemma:coli'
+1.680743 O        b'+1:lemma:sparging'
+1.679592 O        b'-1:postag:NNS'
+1.678415 Air      b'-1:lemma:co2'
+1.676578 O        b'lemma[:1]:-'
+1.669982 pH       b'lemma:ph5'
+1.669982 pH       b'+1:lemma:.5'
+1.659378 Substrain b'+1:lemma:phtpg'
+1.658130 Gtype    b'-1:lemma:rpob'
+1.643206 O        b'lemma[:1]:c'
+1.637539 Gtype    b'lemma[:2]:wi'
+1.628222 Supp     b'+1:lemma:min'
+
+
+Top negative:
+-0.048858 Air      b'lemma:-rrb-'
+-0.053617 OD       b'-1:lemma:od600'
+-0.056105 Supp     b'+1:lemma:dpd'
+-0.058525 O        b'+1:lemma:95'
+-0.061956 Supp     b'-1:lemma:%'
+-0.062560 O        b'+1:lemma:cell'
+-0.065163 Supp     b'lemma:vol'
+-0.065163 Supp     b'-1:lemma:1/100'
+-0.067871 O        b'+1:lemma:antibody'
+-0.069248 Gtype    b'+1:postag:NN'
+-0.072048 O        b'lemma:2.0'
+-0.078220 Supp     b'lemma[:2]:vo'
+-0.079573 Supp     b'-1:postag::'
+-0.084349 Supp     b'-1:lemma:;'
+-0.085848 O        b'-1:lemma:-lrb-'
+-0.097584 O        b'+1:lemma:phosphate'
+-0.098013 Supp     b'+1:lemma:rifampicin'
+-0.104233 Phase    b'-1:lemma:at'
+-0.109073 O        b'lemma:7.6'
+-0.109073 O        b'+1:lemma:;'
+-0.109073 O        b'lemma[:2]:7.'
+-0.110982 Air      b'-1:postag:CC'
+-0.115095 O        b'+1:lemma:0.3'
+-0.124835 Gtype    b'lemma[:1]:g'
+-0.138288 O        b'-1:lemma:g/l'
+-0.139335 O        b'-1:lemma:control'
+-0.140398 O        b'lemma:1/100'
+-0.140398 O        b'+1:lemma:vol'
+-0.140398 O        b'lemma[:2]:1/'
+-0.142417 O        b'lemma[:2]:ph'
+-0.150417 Supp     b'-1:lemma:dpd'
+-0.152181 Air      b'postag:CC'
+-0.156096 Supp     b'lemma[:2]:mm'
+-0.170571 Supp     b'lemma[:1]:v'
+-0.176750 Supp     b'-1:lemma:.'
+-0.176750 Supp     b'-1:postag:.'
+-0.177644 Air      b'+1:postag:JJ'
+-0.183264 O        b'lemma:ph'
+-0.194456 O        b'+1:lemma:_'
+-0.198008 O        b'lemma[:1]:I'
+-0.198858 Med      b'lemma[:1]:c'
+-0.200600 Supp     b'postag:CD'
+-0.200922 Supp     b'lemma[:2]:10'
+-0.225778 O        b'lemma:sodium'
+-0.227988 O        b'lemma:150'
+-0.227988 O        b'+1:lemma:mg/ml'
+-0.227988 O        b'lemma[:2]:15'
+-0.230044 Air      b'-1:lemma:grow'
+-0.230726 O        b'lemma[:1]:L'
+-0.242707 OD       b'+1:lemma:0.4'
+-0.247792 O        b'lemma:aerobic'
+-0.250676 Gtype    b'postag:CD'
+-0.251160 O        b'lemma:37'
+-0.251160 O        b'lemma[:2]:37'
+-0.252456 Supp     b'lemma[:1]:o'
+-0.257318 Supp     b'lemma:mm'
+-0.261677 O        b'lemma:minimal'
+-0.264264 O        b'-1:lemma:phosphate'
+-0.265979 O        b'lemma:1m'
+-0.265979 O        b'lemma[:2]:1m'
+-0.266597 O        b'lemma:media'
+-0.267452 O        b'lemma[:2]:an'
+-0.267991 Supp     b'lemma:10'
+-0.278125 O        b'lemma[:2]:0.'
+-0.280995 Supp     b'lemma[:1]:a'
+-0.282672 Phase    b'+1:postag:NN'
+-0.283800 O        b'-1:lemma:iptg'
+-0.286359 O        b'+1:lemma:1/100'
+-0.296570 O        b'-1:postag:IN'
+-0.303339 O        b'lemma:wt'
+-0.303339 O        b'lemma[:2]:wt'
+-0.304954 O        b'-1:lemma:n2'
+-0.305002 O        b'+1:lemma:for'
+-0.313331 O        b'+1:lemma:ph'
+-0.315827 O        b'+1:lemma:rep2'
+-0.316914 Supp     b'-1:postag:NNP'
+-0.317533 O        b'+1:lemma:.'
+-0.317533 O        b'+1:postag:.'
+-0.319317 O        b'lemma[:2]:od'
+-0.321743 Supp     b'+1:lemma:fructose'
+-0.325179 Gtype    b'-1:lemma:-lrb-'
+-0.327448 Technique b'-1:lemma::'
+-0.332177 O        b'+1:lemma:supplement'
+-0.340289 O        b'lemma:of'
+-0.340289 O        b'lemma[:2]:of'
+-0.346020 pH       b'postag:NN'
+-0.348702 O        b'-1:lemma:1m'
+-0.348772 O        b'-1:lemma:of'
+-0.353402 O        b'-1:postag:-LRB-'
+-0.353653 Gtype    b'lemma[:1]:-'
+-0.370016 Air      b'+1:postag:-LRB-'
+-0.378377 Med      b'+1:postag:NN'
+-0.386701 O        b'lemma:co2'
+-0.387052 O        b'+1:lemma:-rrb-'
+-0.410253 O        b'lemma:anaerobically'
+-0.410584 O        b'-1:lemma:from'
+-0.411044 Med      b'-1:postag:NN'
+-0.423352 Med      b'+1:postag:IN'
+-0.425947 O        b'lemma:glucose'
+-0.439413 O        b'+1:postag:-RRB-'
+-0.439693 O        b'+1:postag:IN'
+-0.445043 O        b'lemma:c'
+-0.449206 Air      b'-1:postag:JJ'
+-0.454193 Med      b'symb'
+-0.455690 O        b'lemma:2h'
+-0.455690 O        b'-1:lemma:additional'
+-0.455690 O        b'lemma[:2]:2h'
+-0.456326 OD       b'hUpper'
+-0.456326 OD       b'hLower'
+-0.457470 O        b'-1:lemma:mm'
+-0.459860 O        b'lemma[:1]:0'
+-0.476971 Anti     b'+1:lemma:anti-fur'
+-0.481570 Air      b'-1:lemma:or'
+-0.487911 Med      b'-1:postag:IN'
+-0.497805 O        b'-1:lemma:37'
+-0.503733 O        b'postag:RB'
+-0.518906 Gtype    b'-1:lemma:mg1655'
+-0.521608 O        b'lemma[:2]:mg'
+-0.539310 Supp     b'-1:lemma:-lrb-'
+-0.544818 Air      b'-1:postag:VBN'
+-0.554971 Air      b'+1:lemma:-lrb-'
+-0.564728 O        b'+1:lemma:at'
+-0.575151 O        b'lemma[:2]:gl'
+-0.586132 Temp     b'hGreek'
+-0.613309 O        b'lemma:methanol'
+-0.622499 Supp     b'lemma[:1]:s'
+-0.648351 Supp     b'-1:postag:-LRB-'
+-0.649606 Air      b'symb'
+-0.665356 O        b'-1:lemma:delta'
+-0.666424 Technique b'postag:NN'
+-0.679462 O        b'lemma[:2]:ar'
+-0.680103 Med      b'-1:postag:CD'
+-0.690689 O        b'-1:lemma:\xe2\x88\x86'
+-0.694572 Supp     b'symb'
+-0.699321 Supp     b'+1:postag:VBN'
+-0.711427 Agit     b'symb'
+-0.727728 Gtype    b'lemma[:1]:c'
+-0.728934 O        b'lemma:mid-log'
+-0.732994 Supp     b'postag:JJ'
+-0.763056 O        b'-1:lemma:final'
+-0.787433 Technique b'-1:postag::'
+-0.799920 Phase    b'postag:JJ'
+-0.805670 O        b'+1:postag:VBG'
+-0.811006 O        b'-1:lemma:nsrr'
+-0.817629 Gtype    b'+1:lemma:-rrb-'
+-0.826953 Phase    b'hUpper'
+-0.826953 Phase    b'hLower'
+-0.832803 O        b'-1:lemma:30'
+-0.866445 O        b'+1:lemma:2.0'
+-0.869353 O        b'-1:lemma:dissolve'
+-0.869353 O        b'+1:lemma:methanol'
+-0.879555 Phase    b'-1:postag:JJ'
+-0.902450 Agit     b'hUpper'
+-0.902450 Agit     b'hLower'
+-0.908311 O        b'-1:lemma:cra'
+-0.913033 O        b'-1:lemma:IP'
+-0.913247 Temp     b'postag:NN'
+-0.923496 O        b'-1:lemma:co2'
+-0.928549 O        b'+1:lemma:until'
+-0.945079 O        b'+1:lemma:1m'
+-0.973593 O        b'postag:VBP'
+-0.977346 O        b'-1:lemma:rpob'
+-0.993918 O        b'+1:lemma:g/l'
+-0.995081 O        b'-1:lemma:ph'
+-1.012606 O        b'lemma[:2]:ri'
+-1.015626 O        b'-1:lemma:until'
+-1.019941 Gtype    b'lemma[:1]:r'
+-1.020871 Anti     b'postag:NNP'
+-1.021292 Gtype    b'lemma[:1]:a'
+-1.043259 O        b'+1:lemma:+'
+-1.064769 O        b'-1:lemma:ml'
+-1.086182 O        b'lemma[:2]:30'
+-1.110227 O        b'lemma:soxs-8myc'
+-1.112350 O        b'lemma:rifampicin'
+-1.121024 O        b'+1:lemma:mm'
+-1.200742 O        b'lemma:0.3'
+-1.229817 O        b'lemma[:2]:me'
+-1.241013 O        b'-1:postag::'
+-1.292670 Supp     b'hGreek'
+-1.298761 O        b'-1:lemma:1'
+-1.329722 Supp     b'+1:lemma:-lrb-'
+-1.340009 O        b'lemma[:2]:ae'
+-1.343861 Supp     b'+1:postag:-LRB-'
+-1.407876 OD       b'+1:postag:NN'
+-1.634875 O        b'-1:lemma:fresh'
+-1.659704 O        b'+1:lemma:1'
+-1.811326 Supp     b'lemma[:1]:c'
+-1.853339 O        b'-1:lemma:sample'
+-1.870273 Air      b'postag:NN'
+-2.008997 Supp     b'+1:lemma:,'
+-2.008997 Supp     b'+1:postag:,'
+-2.030519 O        b'+1:lemma:in'
+-2.074714 O        b'-1:postag:VBG'
+-2.120965 Temp     b'+1:postag:IN'
+-2.153912 O        b'+1:lemma:2'
+-2.533264 O        b'-1:lemma:vol'
+-2.654052 O        b'-1:lemma:2'
+-2.901215 O        b'lemma[:2]:fl'
+-4.156418 O        b'-1:lemma:_'
+-4.945535 O        b'-1:lemma::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.11720815886647881, 'c2': 0.026187454028628224}
+best CV score:0.8623150078546968
+model size: 0.12M
+
+Flat F1: 0.7729583914691408
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.690     0.816        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.556     0.362     0.439        69
+       Anti      0.579     1.000     0.733        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.877     0.753     0.810        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.735     0.806     0.769       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.811     0.752     0.773       451
+
+
+Top likely transitions:
+Temp   -> Temp    5.534350
+Anti   -> Anti    5.202035
+OD     -> OD      5.162013
+Agit   -> Agit    5.101850
+Supp   -> Supp    4.862669
+Med    -> Med     4.742631
+Gtype  -> Gtype   4.690492
+Gversion -> Gversion 4.253159
+Phase  -> Phase   4.193306
+O      -> O       4.143359
+Air    -> Air     4.079274
+Technique -> Technique 3.737825
+pH     -> pH      2.701172
+Substrain -> Gtype   1.413086
+Gtype  -> Supp    1.215131
+O      -> Gtype   1.183861
+O      -> Technique 1.124196
+Gtype  -> Air     0.906865
+O      -> Supp    0.894361
+Air    -> O       0.782291
+Technique -> Air     0.697709
+Gtype  -> pH      0.616305
+Temp   -> O       0.413091
+Supp   -> O       0.344753
+O      -> Temp    0.252965
+O      -> Anti    0.243401
+Med    -> O       0.118001
+O      -> pH      0.044367
+Strain -> O       0.008900
+O      -> Phase   0.000404
+O      -> Gversion 0.000174
+O      -> Agit    -0.000001
+OD     -> O       -0.000957
+O      -> OD      -0.000978
+Anti   -> Med     -0.003482
+Phase  -> O       -0.006839
+Technique -> O       -0.130344
+Agit   -> O       -0.145879
+Air    -> Supp    -0.189667
+O      -> Med     -0.260087
+Phase  -> Supp    -0.337496
+Gtype  -> Anti    -0.357408
+Phase  -> OD      -0.410012
+OD     -> Air     -0.412447
+Air    -> Temp    -0.475634
+Gtype  -> Med     -0.476794
+Air    -> Phase   -0.503738
+Gtype  -> O       -0.571166
+Air    -> Med     -0.589897
+O      -> Air     -0.677813
+
+
+Top unlikely transitions:
+Med    -> Med     4.742631
+Gtype  -> Gtype   4.690492
+Gversion -> Gversion 4.253159
+Phase  -> Phase   4.193306
+O      -> O       4.143359
+Air    -> Air     4.079274
+Technique -> Technique 3.737825
+pH     -> pH      2.701172
+Substrain -> Gtype   1.413086
+Gtype  -> Supp    1.215131
+O      -> Gtype   1.183861
+O      -> Technique 1.124196
+Gtype  -> Air     0.906865
+O      -> Supp    0.894361
+Air    -> O       0.782291
+Technique -> Air     0.697709
+Gtype  -> pH      0.616305
+Temp   -> O       0.413091
+Supp   -> O       0.344753
+O      -> Temp    0.252965
+O      -> Anti    0.243401
+Med    -> O       0.118001
+O      -> pH      0.044367
+Strain -> O       0.008900
+O      -> Phase   0.000404
+O      -> Gversion 0.000174
+O      -> Agit    -0.000001
+OD     -> O       -0.000957
+O      -> OD      -0.000978
+Anti   -> Med     -0.003482
+Phase  -> O       -0.006839
+Technique -> O       -0.130344
+Agit   -> O       -0.145879
+Air    -> Supp    -0.189667
+O      -> Med     -0.260087
+Phase  -> Supp    -0.337496
+Gtype  -> Anti    -0.357408
+Phase  -> OD      -0.410012
+OD     -> Air     -0.412447
+Air    -> Temp    -0.475634
+Gtype  -> Med     -0.476794
+Air    -> Phase   -0.503738
+Gtype  -> O       -0.571166
+Air    -> Med     -0.589897
+O      -> Air     -0.677813
+Technique -> pH      -0.697146
+Supp   -> Med     -0.874957
+Technique -> Gtype   -0.966031
+Substrain -> O       -1.152021
+Med    -> Supp    -1.883468
+
+
+Top positive:
+5.346056 Air      b'word:Aerobic'
+4.814989 O        b'lemma:_'
+4.814989 O        b'word:_'
+4.683626 Air      b'lemma:anaerobic'
+4.137422 O        b'word:Cra'
+3.717067 Air      b'postag:RB'
+3.648734 Technique b'word:ChIP-Seq'
+3.591761 O        b'postag:IN'
+3.527991 Gtype    b'lemma:wt'
+3.502005 O        b'-1:lemma:ChIP-exo'
+3.404088 Gtype    b'lemma:wild-type'
+3.374603 Air      b'word:Anaerobic'
+3.313814 Technique b'lemma:ChIP-exo'
+3.289286 Supp     b'lemma:nh4cl'
+3.261253 O        b'postag::'
+3.210614 Supp     b'lemma:Iron'
+3.210614 Supp     b'word:Iron'
+3.210614 Supp     b'+1:word:Deficient'
+3.205283 Technique b'word:ChIP-exo'
+3.177621 Supp     b'lemma:pq'
+3.177621 Supp     b'word:PQ'
+3.149226 Technique b'word:ChIPSeq'
+3.063798 O        b'lemma:2'
+3.063798 O        b'word:2'
+3.039767 Supp     b'-1:word:Cra'
+2.926997 Strain   b'+1:lemma:substr'
+2.926997 Strain   b'+1:word:substr'
+2.924815 Gtype    b'lemma:type'
+2.924815 Gtype    b'word:type'
+2.895571 Med      b'lemma:MOPS'
+2.895571 Med      b'word:MOPS'
+2.886364 Phase    b'lemma:mid-log'
+2.886364 Phase    b'word:mid-log'
+2.877854 O        b'lemma:-'
+2.877854 O        b'word:-'
+2.870915 Technique b'lemma:rna-seq'
+2.819786 Gtype    b'word:WT'
+2.808619 O        b'lemma:rpob'
+2.808619 O        b'word:RpoB'
+2.775553 O        b'lemma:1'
+2.775553 O        b'word:1'
+2.716320 Gversion b'lemma:asm584v2'
+2.716320 Gversion b'word:ASM584v2'
+2.606208 O        b'-1:lemma:tag'
+2.586384 O        b'lemma:Custom'
+2.586384 O        b'word:Custom'
+2.582328 O        b'lemma:.'
+2.582328 O        b'postag:.'
+2.582328 O        b'word:.'
+2.554026 Gtype    b'lemma:\xce\xb4cra'
+2.550784 Gtype    b'word:\xce\x94cra'
+2.548130 O        b'lemma:chip'
+2.540102 Phase    b'lemma:exponential'
+2.540102 Phase    b'word:exponential'
+2.540102 Phase    b'lemma:stationary'
+2.540102 Phase    b'word:stationary'
+2.534852 O        b'lemma:3'
+2.534852 O        b'word:3'
+2.483583 Supp     b'+1:lemma:\xc2\xb5m'
+2.483583 Supp     b'+1:word:\xc2\xb5M'
+2.428266 Gtype    b'+1:lemma:type'
+2.428266 Gtype    b'+1:word:type'
+2.423833 Technique b'lemma:chipseq'
+2.335552 Supp     b'lemma:glucose'
+2.335552 Supp     b'word:glucose'
+2.303572 O        b'lemma:b'
+2.303572 O        b'word:B'
+2.275983 Supp     b'lemma:arginine'
+2.258897 O        b'postag:CC'
+2.258702 Supp     b'lemma:nacl'
+2.258702 Supp     b'word:NaCl'
+2.248340 O        b'lemma:a'
+2.240067 O        b'-1:word:tag'
+2.219665 O        b'+1:lemma:pq'
+2.219665 O        b'+1:word:PQ'
+2.201128 O        b'lemma:ompr'
+2.201128 O        b'word:OmpR'
+2.196031 Supp     b'lemma:rifampicin'
+2.196031 Supp     b'word:rifampicin'
+2.166584 Substrain b'lemma:mg1655'
+2.166584 Substrain b'word:MG1655'
+2.150321 Gtype    b'lemma:flag-tag'
+2.150321 Gtype    b'-1:lemma:c-terminal'
+2.150321 Gtype    b'word:Flag-tag'
+2.150321 Gtype    b'-1:word:C-terminal'
+2.144846 Gtype    b'-1:postag:VBG'
+2.133181 pH       b'+1:postag:CD'
+2.127721 O        b'word:A'
+2.115852 O        b'-1:word:Aerobic'
+2.096172 Gtype    b'lemma:delta-fnr'
+2.096172 Gtype    b'word:delta-fnr'
+2.095669 Gversion b'lemma:nc'
+2.095669 Gversion b'word:NC'
+2.056559 Technique b'lemma:rnaseq'
+2.056559 Technique b'word:RNASeq'
+2.056377 Air      b'word:anaerobic'
+2.035701 O        b'+1:postag:RB'
+2.004258 Supp     b'lemma:acetate'
+2.004258 Supp     b'word:acetate'
+1.965988 O        b'+1:postag:NNP'
+1.964752 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.964752 Gtype    b'-1:word:\xe2\x88\x86'
+1.910185 Gtype    b'lemma:\xe2\x88\x86'
+1.910185 Gtype    b'word:\xe2\x88\x86'
+1.904605 Strain   b'lemma:k-12'
+1.904605 Strain   b'word:K-12'
+1.891315 Gtype    b'postag:-LRB-'
+1.887141 Air      b'-1:lemma:ChIP-Seq'
+1.887141 Air      b'-1:word:ChIP-Seq'
+1.880957 Agit     b'+1:lemma:rpm'
+1.880957 Agit     b'+1:word:rpm'
+1.877174 O        b'postag:VBN'
+1.877047 Supp     b'-1:lemma:with'
+1.877047 Supp     b'-1:word:with'
+1.865462 Gversion b'-1:lemma:nc'
+1.865462 Gversion b'-1:word:NC'
+1.861443 Gtype    b'lemma:arca8myc'
+1.861443 Gtype    b'word:ArcA8myc'
+1.839749 O        b'+1:word:were'
+1.838491 O        b'+1:word:ChIP-Seq'
+1.824231 O        b'lemma:rep1'
+1.824231 O        b'word:rep1'
+1.824111 Supp     b'lemma:nitrate'
+1.824111 Supp     b'word:nitrate'
+1.816106 O        b'-1:lemma:lb'
+1.816106 O        b'-1:word:LB'
+1.809240 Technique b'-1:lemma:chip-exo'
+1.802237 Gtype    b'word:cra'
+1.797362 Agit     b'lemma:rpm'
+1.797362 Agit     b'word:rpm'
+1.796466 Anti     b'lemma:seqa'
+1.796466 Anti     b'word:SeqA'
+1.788369 Supp     b'-1:lemma:Cra'
+1.787306 O        b'lemma:rep3'
+1.787306 O        b'word:rep3'
+1.759779 O        b'isLower'
+1.740278 O        b'lemma:Cra'
+1.724562 O        b'lemma:with'
+1.724562 O        b'word:with'
+1.722881 Med      b'+1:lemma:0.4'
+1.722881 Med      b'+1:word:0.4'
+1.704798 O        b'lemma:at'
+1.698923 Gversion b'lemma:chip-seq'
+1.683530 Gtype    b'lemma:pk4854'
+1.683530 Gtype    b'word:PK4854'
+1.671411 Air      b'lemma:aerobic'
+1.666004 Vess     b'lemma:flask'
+1.666004 Vess     b'-1:lemma:warm'
+1.666004 Vess     b'word:flask'
+1.666004 Vess     b'-1:word:warmed'
+1.665360 Gtype    b'postag:NN'
+1.664894 Supp     b'lemma:no3'
+1.664894 Supp     b'word:NO3'
+1.657234 Anti     b'lemma:none'
+1.657234 Anti     b'word:none'
+1.654372 O        b'lemma:culture'
+1.643899 Supp     b'-1:lemma:+'
+1.643899 Supp     b'-1:word:+'
+1.641571 Air      b'-1:postag::'
+1.637039 Supp     b'-1:lemma:vol'
+1.637039 Supp     b'-1:word:vol'
+1.618213 Supp     b'lemma:dpd'
+1.618213 Supp     b'word:DPD'
+1.611503 O        b'-1:lemma:glucose'
+1.611503 O        b'-1:word:glucose'
+1.609875 Anti     b'lemma:\xcf\x8332'
+1.609875 Anti     b'word:\xcf\x8332'
+1.607928 Gtype    b'lemma:\xce\xb4soxr'
+1.607928 Gtype    b'word:\xce\x94soxR'
+1.605256 Med      b'-1:lemma:ml'
+1.605256 Med      b'-1:word:ml'
+1.602162 Technique b'word:RNA-Seq'
+1.589352 Air      b'lemma:Aerobic'
+1.584726 Gversion b'word:ChIP-Seq'
+1.580172 Air      b'lemma:anaeroibc'
+1.580172 Air      b'word:Anaeroibc'
+1.571537 O        b'lemma:\xcf\x8332'
+1.571537 O        b'word:\xcf\x8332'
+1.571064 Supp     b'lemma:Leu'
+1.571064 Supp     b'word:Leu'
+1.570481 Gtype    b'lemma:\xce\xb4fur'
+1.570481 Gtype    b'word:\xce\x94fur'
+1.563108 O        b'-1:lemma:0.3'
+1.563108 O        b'-1:word:0.3'
+1.559415 Vess     b'-1:postag:VBN'
+1.558118 O        b'lemma::'
+1.558118 O        b'word::'
+1.538469 Med      b'lemma:broth'
+1.538469 Med      b'-1:lemma:L'
+1.538469 Med      b'word:broth'
+1.538469 Med      b'-1:word:L'
+1.521808 Gtype    b'+1:lemma:with'
+1.521808 Gtype    b'+1:word:with'
+1.520140 Air      b'lemma:anaerobically'
+1.520140 Air      b'word:anaerobically'
+1.513230 Supp     b'lemma:Fe'
+1.513230 Supp     b'word:Fe'
+1.508184 O        b'-1:lemma:wt'
+1.482348 Gtype    b'word:Wild-type'
+1.478153 O        b'lemma:harbor'
+
+
+Top negative:
+-0.165864 O        b'word:glucose'
+-0.166177 Supp     b'lemma:10'
+-0.166177 Supp     b'word:10'
+-0.167098 Air      b'isLower'
+-0.167761 O        b'-1:word:from'
+-0.171430 O        b'-1:lemma:delta'
+-0.171430 O        b'-1:word:delta'
+-0.173899 O        b'+1:word:was'
+-0.175064 O        b'-1:lemma:final'
+-0.175064 O        b'-1:word:final'
+-0.175415 O        b'+1:lemma:for'
+-0.175588 O        b'-1:lemma:sodium'
+-0.175588 O        b'-1:word:Sodium'
+-0.176424 O        b'-1:lemma:m'
+-0.176424 O        b'-1:word:M'
+-0.177631 O        b'-1:postag:DT'
+-0.184729 Supp     b'+1:lemma:rifampicin'
+-0.184729 Supp     b'+1:word:rifampicin'
+-0.185903 O        b'lemma:fructose'
+-0.185903 O        b'word:fructose'
+-0.186123 Air      b'-1:postag:VBN'
+-0.189612 O        b'word:cells'
+-0.196713 O        b'-1:lemma:1m'
+-0.196713 O        b'-1:word:1M'
+-0.207755 O        b'-1:lemma:cra'
+-0.208558 O        b'+1:word:C'
+-0.208657 Med      b'+1:postag:NN'
+-0.233153 O        b'word:ChIP-exo'
+-0.245194 Supp     b'+1:lemma:dpd'
+-0.245194 Supp     b'+1:word:DPD'
+-0.252316 O        b'-1:word:the'
+-0.254853 O        b'+1:lemma:.'
+-0.254853 O        b'+1:postag:.'
+-0.254853 O        b'+1:word:.'
+-0.256451 O        b'+1:lemma:until'
+-0.256451 O        b'+1:word:until'
+-0.258020 O        b'-1:postag:JJ'
+-0.259972 O        b'lemma:20'
+-0.259972 O        b'word:20'
+-0.260590 Med      b'+1:postag:IN'
+-0.262788 O        b'-1:lemma:the'
+-0.270489 Phase    b'+1:postag:NN'
+-0.272030 Gtype    b'+1:postag:CD'
+-0.288673 pH       b'postag:NN'
+-0.294614 O        b'+1:lemma:supplement'
+-0.294614 O        b'+1:word:supplemented'
+-0.295450 Technique b'-1:postag::'
+-0.298173 OD       b'isNumber'
+-0.300823 O        b'+1:postag:-LRB-'
+-0.316781 O        b'lemma:minimal'
+-0.316781 O        b'word:minimal'
+-0.331660 O        b'-1:postag:-LRB-'
+-0.339761 O        b'-1:lemma:mm'
+-0.339761 O        b'-1:word:mM'
+-0.342651 O        b'-1:lemma:n2'
+-0.342651 O        b'-1:word:N2'
+-0.348976 O        b'-1:lemma:37'
+-0.348976 O        b'-1:word:37'
+-0.350719 pH       b'isUpper'
+-0.355836 O        b'lemma:medium'
+-0.355836 O        b'word:medium'
+-0.358797 O        b'-1:lemma:co2'
+-0.358797 O        b'-1:word:CO2'
+-0.360206 O        b'lemma:37'
+-0.360206 O        b'word:37'
+-0.363212 Anti     b'isUpper'
+-0.363229 O        b'lemma:aerobically'
+-0.363229 O        b'word:aerobically'
+-0.387107 O        b'-1:lemma:ph'
+-0.387107 O        b'-1:word:pH'
+-0.388937 Air      b'-1:postag:CC'
+-0.403999 Supp     b'+1:lemma:acetate'
+-0.403999 Supp     b'+1:word:acetate'
+-0.405755 O        b'+1:postag:IN'
+-0.405984 Supp     b'-1:lemma:-lrb-'
+-0.405984 Supp     b'-1:word:-LRB-'
+-0.407871 O        b'lemma:\xce\xb4fur'
+-0.407871 O        b'word:\xce\x94fur'
+-0.410756 O        b'lemma:mid-log'
+-0.410756 O        b'word:mid-log'
+-0.413451 Gtype    b'+1:lemma:-lrb-'
+-0.413451 Gtype    b'+1:word:-LRB-'
+-0.415001 O        b'lemma:nitrate'
+-0.415001 O        b'word:nitrate'
+-0.418409 Gtype    b'-1:postag:CD'
+-0.421257 Supp     b'+1:lemma:fructose'
+-0.421257 Supp     b'+1:word:fructose'
+-0.422476 O        b'+1:postag:-RRB-'
+-0.439758 Supp     b'+1:lemma:nacl'
+-0.439758 Supp     b'+1:word:NaCl'
+-0.439850 Supp     b'-1:postag:-LRB-'
+-0.441680 O        b'+1:lemma:2.0'
+-0.441680 O        b'+1:word:2.0'
+-0.451586 O        b'-1:lemma:until'
+-0.451586 O        b'-1:word:until'
+-0.452607 Air      b'-1:lemma:or'
+-0.452607 Air      b'-1:word:or'
+-0.458248 Med      b'-1:postag:NN'
+-0.459831 O        b'+1:lemma:+'
+-0.459831 O        b'+1:word:+'
+-0.460799 O        b'-1:lemma:dissolve'
+-0.460799 O        b'+1:lemma:methanol'
+-0.460799 O        b'-1:word:dissolved'
+-0.460799 O        b'+1:word:methanol'
+-0.475659 O        b'-1:lemma:rpob'
+-0.475659 O        b'-1:word:RpoB'
+-0.489439 O        b'-1:lemma:chip-exo'
+-0.516959 O        b'lemma:methanol'
+-0.516959 O        b'word:methanol'
+-0.519060 O        b'lemma:0.3'
+-0.519060 O        b'word:0.3'
+-0.521823 O        b'-1:lemma:\xe2\x88\x86'
+-0.521823 O        b'-1:word:\xe2\x88\x86'
+-0.532528 Supp     b'postag:CC'
+-0.555308 O        b'+1:lemma:at'
+-0.555308 O        b'+1:word:at'
+-0.568935 O        b'+1:word:ChIP-exo'
+-0.587243 pH       b'isLower'
+-0.598998 O        b'lemma:anaerobically'
+-0.598998 O        b'word:anaerobically'
+-0.601761 O        b'lemma:30'
+-0.601761 O        b'word:30'
+-0.604543 Phase    b'isUpper'
+-0.609562 O        b'+1:lemma:1m'
+-0.609562 O        b'+1:word:1M'
+-0.624149 O        b'+1:lemma:g/l'
+-0.624149 O        b'+1:word:g/L'
+-0.632418 O        b'-1:lemma:30'
+-0.632418 O        b'-1:word:30'
+-0.633125 O        b'lemma:2h'
+-0.633125 O        b'-1:lemma:additional'
+-0.633125 O        b'word:2h'
+-0.633125 O        b'-1:word:additional'
+-0.634616 O        b'+1:lemma:mm'
+-0.634616 O        b'+1:word:mM'
+-0.640250 Air      b'+1:postag:JJ'
+-0.653940 O        b'lemma:of'
+-0.653940 O        b'word:of'
+-0.659372 O        b'-1:postag:IN'
+-0.692700 O        b'-1:lemma:nsrr'
+-0.692700 O        b'-1:word:NsrR'
+-0.702058 O        b'lemma:wt'
+-0.715997 Supp     b'-1:postag:NNP'
+-0.732594 O        b'-1:lemma:ml'
+-0.732594 O        b'-1:word:ml'
+-0.739666 Supp     b'+1:postag:VBN'
+-0.740410 O        b'lemma:nitrogen'
+-0.740410 O        b'word:nitrogen'
+-0.774393 O        b'-1:lemma:1'
+-0.774393 O        b'-1:word:1'
+-0.775963 Med      b'-1:postag:IN'
+-0.800588 O        b'-1:lemma:2'
+-0.800588 O        b'-1:word:2'
+-0.803460 O        b'lemma:media'
+-0.803460 O        b'word:media'
+-0.804540 O        b'-1:postag::'
+-0.811529 O        b'-1:lemma:IP'
+-0.811529 O        b'-1:word:IP'
+-0.838460 Air      b'postag:NN'
+-0.839107 O        b'postag:RB'
+-0.861540 O        b'-1:lemma:fresh'
+-0.861540 O        b'-1:word:fresh'
+-0.888556 O        b'+1:lemma:1'
+-0.888556 O        b'+1:word:1'
+-0.893910 Temp     b'postag:NN'
+-0.912818 O        b'-1:lemma:sample'
+-0.918416 O        b'+1:postag:VBG'
+-0.932692 Gtype    b'isUpper'
+-0.946508 Agit     b'isUpper'
+-0.991033 Gtype    b'isLower'
+-1.014529 O        b'+1:lemma:in'
+-1.014529 O        b'+1:word:in'
+-1.018421 Technique b'isNumber'
+-1.123268 O        b'lemma:rifampicin'
+-1.123268 O        b'word:rifampicin'
+-1.152939 Technique b'isLower'
+-1.187285 Supp     b'+1:lemma:-lrb-'
+-1.187285 Supp     b'+1:word:-LRB-'
+-1.223419 Supp     b'+1:postag:-LRB-'
+-1.268612 O        b'postag:VBP'
+-1.279408 O        b'+1:lemma:2'
+-1.279408 O        b'+1:word:2'
+-1.359325 Gtype    b'isNumber'
+-1.384781 Supp     b'+1:lemma:,'
+-1.384781 Supp     b'+1:postag:,'
+-1.384781 Supp     b'+1:word:,'
+-1.428559 O        b'-1:lemma:vol'
+-1.428559 O        b'-1:word:vol'
+-1.432202 Gversion b'isLower'
+-1.530158 Supp     b'postag:JJ'
+-1.621285 OD       b'+1:postag:NN'
+-1.631452 Phase    b'postag:JJ'
+-1.756839 Temp     b'+1:postag:IN'
+-1.806660 Anti     b'postag:NNP'
+-1.859199 Phase    b'-1:postag:JJ'
+-1.984210 O        b'-1:lemma:_'
+-1.984210 O        b'-1:word:_'
+-2.026219 O        b'-1:postag:VBG'
+-2.285116 O        b'-1:lemma::'
+-2.285116 O        b'-1:word::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.025397838188738985, 'c2': 0.010943674737961755}
+best CV score:0.866151069813274
+model size: 0.15M
+
+Flat F1: 0.7919663066130411
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.724     0.840        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.886     0.824     0.854        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.745     0.806     0.774       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.826     0.769     0.792       451
+
+
+Top likely transitions:
+Temp   -> Temp    5.760887
+Med    -> Med     5.678477
+Anti   -> Anti    5.326115
+Agit   -> Agit    5.286360
+Supp   -> Supp    5.206097
+Gtype  -> Gtype   5.054366
+OD     -> OD      4.762019
+O      -> O       4.584226
+Gversion -> Gversion 4.568451
+Phase  -> Phase   4.187286
+Technique -> Technique 4.138629
+Air    -> Air     4.000035
+pH     -> pH      2.729965
+Substrain -> Gtype   1.627917
+O      -> Technique 1.124864
+O      -> Gtype   0.872372
+Technique -> Air     0.731367
+Gtype  -> Supp    0.637844
+Gtype  -> Air     0.628544
+Gtype  -> pH      0.590887
+Temp   -> O       0.369557
+Air    -> O       0.111207
+O      -> Temp    0.069854
+Strain -> O       0.060323
+O      -> pH      0.012969
+O      -> Gversion 0.008119
+O      -> Anti    0.005882
+O      -> Strain  -0.000031
+O      -> Substrain -0.000043
+Supp   -> Gversion -0.000207
+Vess   -> O       -0.012750
+Phase  -> Anti    -0.021251
+Supp   -> OD      -0.026454
+Gtype  -> OD      -0.036196
+O      -> Phase   -0.036759
+pH     -> O       -0.045025
+Phase  -> Air     -0.050032
+Phase  -> Technique -0.056805
+Gtype  -> Technique -0.057557
+Supp   -> Phase   -0.061193
+Med    -> O       -0.061484
+O      -> Supp    -0.071678
+Agit   -> O       -0.081937
+Anti   -> Gtype   -0.086639
+Anti   -> Phase   -0.088763
+OD     -> Med     -0.098634
+Supp   -> pH      -0.101552
+Supp   -> O       -0.105915
+Gtype  -> Phase   -0.115027
+pH     -> Supp    -0.117891
+
+
+Top unlikely transitions:
+O      -> Supp    -0.071678
+Agit   -> O       -0.081937
+Anti   -> Gtype   -0.086639
+Anti   -> Phase   -0.088763
+OD     -> Med     -0.098634
+Supp   -> pH      -0.101552
+Supp   -> O       -0.105915
+Gtype  -> Phase   -0.115027
+pH     -> Supp    -0.117891
+Gtype  -> Gversion -0.121895
+Anti   -> O       -0.201256
+Technique -> Supp    -0.229809
+Gversion -> O       -0.230521
+Med    -> Air     -0.267137
+O      -> Agit    -0.281266
+Gversion -> Supp    -0.287197
+Supp   -> Gtype   -0.291702
+Anti   -> Supp    -0.353269
+Technique -> OD      -0.362376
+Technique -> O       -0.381273
+Supp   -> Anti    -0.420491
+Anti   -> Temp    -0.442117
+Air    -> OD      -0.473267
+Temp   -> Air     -0.506469
+O      -> OD      -0.516111
+Air    -> Agit    -0.518285
+OD     -> Supp    -0.549851
+OD     -> O       -0.692796
+Gtype  -> O       -0.708611
+Supp   -> Air     -0.710521
+Gtype  -> Anti    -0.742633
+Gtype  -> Med     -0.747450
+Phase  -> Med     -0.781570
+OD     -> Air     -0.812786
+O      -> Med     -0.889466
+Agit   -> Air     -0.930785
+Phase  -> OD      -0.941459
+Technique -> pH      -1.069982
+Phase  -> Supp    -1.109907
+Air    -> Med     -1.179927
+Air    -> Phase   -1.299860
+Substrain -> O       -1.308161
+Temp   -> Med     -1.308517
+Phase  -> O       -1.327800
+Air    -> Temp    -1.331056
+Air    -> Supp    -1.346362
+O      -> Air     -1.390028
+Technique -> Gtype   -1.424338
+Supp   -> Med     -1.619256
+Med    -> Supp    -2.800528
+
+
+Top positive:
+5.583316 Air      b'word:Aerobic'
+5.568452 O        b'lemma:_'
+5.568452 O        b'word:_'
+5.408845 O        b'word:Cra'
+4.999592 Air      b'lemma:anaerobic'
+4.519603 Supp     b'-1:word:Cra'
+4.085441 Technique b'word:ChIP-Seq'
+4.045495 Gtype    b'lemma:wt'
+4.028624 Phase    b'lemma:exponential'
+4.028624 Phase    b'word:exponential'
+4.028624 Phase    b'lemma:stationary'
+4.028624 Phase    b'word:stationary'
+3.845256 Gtype    b'lemma:wild-type'
+3.774295 Supp     b'lemma:Iron'
+3.774295 Supp     b'word:Iron'
+3.774295 Supp     b'+1:word:Deficient'
+3.734294 O        b'lemma:-'
+3.734294 O        b'word:-'
+3.706486 Supp     b'lemma:nh4cl'
+3.556725 O        b'+1:postag:RB'
+3.535557 Phase    b'lemma:mid-log'
+3.535557 Phase    b'word:mid-log'
+3.518403 Air      b'word:Anaerobic'
+3.506387 Air      b'postag:RB'
+3.497482 O        b'-1:lemma:ChIP-exo'
+3.467179 Med      b'lemma:MOPS'
+3.467179 Med      b'word:MOPS'
+3.455080 Gtype    b'word:WT'
+3.454991 Technique b'lemma:ChIP-exo'
+3.420923 Gtype    b'lemma:\xce\xb4cra'
+3.417588 Gtype    b'word:\xce\x94cra'
+3.314327 Supp     b'lemma:pq'
+3.314327 Supp     b'word:PQ'
+3.305655 Technique b'word:ChIPSeq'
+3.233996 O        b'lemma:rpob'
+3.233996 O        b'word:RpoB'
+3.230643 O        b'-1:word:tag'
+3.215437 Technique b'word:ChIP-exo'
+3.209263 Gversion b'lemma:asm584v2'
+3.209263 Gversion b'word:ASM584v2'
+3.172641 O        b'lemma:at'
+3.144467 O        b'lemma:Custom'
+3.144467 O        b'word:Custom'
+3.098885 Technique b'lemma:rna-seq'
+3.054449 O        b'lemma:2'
+3.054449 O        b'word:2'
+3.034553 Supp     b'+1:lemma:\xc2\xb5m'
+3.034553 Supp     b'+1:word:\xc2\xb5M'
+3.000931 O        b'-1:lemma:tag'
+2.989138 O        b'lemma:.'
+2.989138 O        b'postag:.'
+2.989138 O        b'word:.'
+2.981955 Strain   b'+1:lemma:substr'
+2.981955 Strain   b'+1:word:substr'
+2.977816 Technique b'lemma:chipseq'
+2.916006 O        b'lemma:1'
+2.916006 O        b'word:1'
+2.871451 Supp     b'postag:VBP'
+2.856639 Gtype    b'lemma:delta-fnr'
+2.856639 Gtype    b'word:delta-fnr'
+2.843912 O        b'lemma:ompr'
+2.843912 O        b'word:OmpR'
+2.751390 Supp     b'lemma:nacl'
+2.751390 Supp     b'word:NaCl'
+2.716201 O        b'+1:lemma:pq'
+2.716201 O        b'+1:word:PQ'
+2.704016 O        b'postag:CC'
+2.702834 O        b'lemma:a'
+2.688516 O        b'lemma:b'
+2.688516 O        b'word:B'
+2.677526 Gtype    b'lemma:flag-tag'
+2.677526 Gtype    b'-1:lemma:c-terminal'
+2.677526 Gtype    b'word:Flag-tag'
+2.677526 Gtype    b'-1:word:C-terminal'
+2.654486 O        b'lemma:with'
+2.654486 O        b'word:with'
+2.651693 O        b'postag:IN'
+2.649950 Gtype    b'lemma:type'
+2.649950 Gtype    b'word:type'
+2.636720 O        b'lemma:3'
+2.636720 O        b'word:3'
+2.631937 O        b'-1:lemma:lb'
+2.631937 O        b'-1:word:LB'
+2.618290 Supp     b'lemma:glucose'
+2.618290 Supp     b'word:glucose'
+2.608453 O        b'-1:word:Aerobic'
+2.600667 Supp     b'lemma:arginine'
+2.585328 O        b'lemma:chip'
+2.578251 Supp     b'lemma:rifampicin'
+2.578251 Supp     b'word:rifampicin'
+2.573636 Supp     b'+1:lemma:Deficient'
+2.514589 O        b'postag::'
+2.492658 O        b'lemma:Cra'
+2.487492 Substrain b'lemma:mg1655'
+2.487492 Substrain b'word:MG1655'
+2.478149 Air      b'word:anaerobic'
+2.456656 Gversion b'-1:lemma:nc'
+2.456656 Gversion b'-1:word:NC'
+2.452611 Anti     b'lemma:seqa'
+2.452611 Anti     b'word:SeqA'
+2.445869 O        b'postag:VBN'
+2.441392 O        b'word:A'
+2.434041 O        b'+1:postag:NNP'
+2.430022 O        b'-1:lemma:0.3'
+2.430022 O        b'-1:word:0.3'
+2.411145 Air      b'lemma:Aerobic'
+2.390202 Supp     b'lemma:Leu'
+2.390202 Supp     b'word:Leu'
+2.387116 Gtype    b'lemma:arca8myc'
+2.387116 Gtype    b'word:ArcA8myc'
+2.375840 Technique b'word:RNA-Seq'
+2.359444 O        b'-1:lemma:glucose'
+2.359444 O        b'-1:word:glucose'
+2.351625 Strain   b'lemma:k-12'
+2.351625 Strain   b'word:K-12'
+2.318240 Supp     b'-1:lemma:Cra'
+2.291182 Gversion b'lemma:chip-seq'
+2.291116 Anti     b'lemma:none'
+2.291116 Anti     b'word:none'
+2.290566 Gversion b'lemma:nc'
+2.290566 Gversion b'word:NC'
+2.284268 O        b'+1:lemma:or'
+2.284268 O        b'+1:word:or'
+2.283438 O        b'lemma::'
+2.283438 O        b'word::'
+2.263553 Supp     b'lemma:acetate'
+2.263553 Supp     b'word:acetate'
+2.260492 O        b'-1:lemma:0.3-0.35'
+2.260492 O        b'-1:word:0.3-0.35'
+2.253939 Gversion b'word:ChIP-Seq'
+2.250232 Technique b'lemma:rnaseq'
+2.250232 Technique b'word:RNASeq'
+2.232794 O        b'+1:word:ChIP-Seq'
+2.229103 Med      b'-1:lemma:ml'
+2.229103 Med      b'-1:word:ml'
+2.227590 O        b'lemma:culture'
+2.224596 Gtype    b'+1:lemma:type'
+2.224596 Gtype    b'+1:word:type'
+2.200566 O        b'lemma:rep3'
+2.200566 O        b'word:rep3'
+2.182661 Anti     b'lemma:\xcf\x8332'
+2.182661 Anti     b'word:\xcf\x8332'
+2.181231 Air      b'lemma:anaeroibc'
+2.181231 Air      b'word:Anaeroibc'
+2.181006 Gtype    b'lemma:wildtype'
+2.179557 Supp     b'lemma:no3'
+2.179557 Supp     b'word:NO3'
+2.168687 O        b'+1:word:were'
+2.168597 O        b'lemma:rep1'
+2.168597 O        b'word:rep1'
+2.167529 Air      b'lemma:aerobically'
+2.167529 Air      b'word:aerobically'
+2.141925 Supp     b'-1:lemma:+'
+2.141925 Supp     b'-1:word:+'
+2.141556 Air      b'-1:lemma:ChIP-Seq'
+2.141556 Air      b'-1:word:ChIP-Seq'
+2.136723 Temp     b'+1:lemma:in'
+2.136723 Temp     b'+1:word:in'
+2.120975 Vess     b'lemma:flask'
+2.120975 Vess     b'-1:lemma:warm'
+2.120975 Vess     b'word:flask'
+2.120975 Vess     b'-1:word:warmed'
+2.115337 Gtype    b'-1:lemma:\xe2\x88\x86'
+2.115337 Gtype    b'-1:word:\xe2\x88\x86'
+2.111591 Gtype    b'lemma:\xce\xb4soxr'
+2.111591 Gtype    b'word:\xce\x94soxR'
+2.087111 Technique b'-1:lemma:chip-exo'
+2.073917 Gtype    b'word:cra'
+2.071081 Agit     b'+1:lemma:rpm'
+2.071081 Agit     b'+1:word:rpm'
+2.070334 Agit     b'lemma:rpm'
+2.070334 Agit     b'word:rpm'
+2.067325 Gtype    b'lemma:dfnr'
+2.067325 Gtype    b'word:dFNR'
+2.061229 Air      b'lemma:anaerobically'
+2.061229 Air      b'word:anaerobically'
+2.054028 Supp     b'-1:lemma:with'
+2.054028 Supp     b'-1:word:with'
+2.046181 O        b'postag:VBG'
+2.032013 Supp     b'lemma:Fe'
+2.032013 Supp     b'word:Fe'
+2.030145 pH       b'+1:postag:CD'
+2.022741 Med      b'-1:lemma:fresh'
+2.022741 Med      b'-1:word:fresh'
+2.019221 Gtype    b'+1:lemma:with'
+2.019221 Gtype    b'+1:word:with'
+2.012561 Air      b'lemma:aerobic'
+2.012064 Gtype    b'-1:postag:VBG'
+2.011339 Med      b'+1:lemma:0.4'
+2.011339 Med      b'+1:word:0.4'
+2.009320 Supp     b'lemma:Adenine'
+2.009320 Supp     b'word:Adenine'
+2.007291 Air      b'-1:postag::'
+1.983786 Anti     b'+1:postag:VBN'
+1.983224 O        b'-1:lemma:into'
+1.983224 O        b'-1:word:into'
+1.964035 O        b'lemma:rep2'
+1.964035 O        b'word:rep2'
+1.959783 Gtype    b'lemma:pk4854'
+1.959783 Gtype    b'word:PK4854'
+
+
+Top negative:
+-0.303383 Temp     b'isLower'
+-0.309535 Air      b'-1:postag:JJ'
+-0.310017 Supp     b'postag:-LRB-'
+-0.317396 O        b'+1:lemma:_'
+-0.317396 O        b'+1:word:_'
+-0.325240 Technique b'-1:postag::'
+-0.330686 O        b'lemma:20'
+-0.330686 O        b'word:20'
+-0.332939 Gtype    b'-1:postag:CD'
+-0.338184 O        b'+1:lemma:minimal'
+-0.338184 O        b'+1:word:minimal'
+-0.344465 Gtype    b'+1:lemma:-lrb-'
+-0.344465 Gtype    b'+1:word:-LRB-'
+-0.348653 O        b'+1:postag:IN'
+-0.349230 Strain   b'isLower'
+-0.358539 O        b'-1:lemma:n2'
+-0.358539 O        b'-1:word:N2'
+-0.360467 O        b'-1:lemma:ph'
+-0.360467 O        b'-1:word:pH'
+-0.372464 O        b'lemma:anaerobic'
+-0.376573 O        b'-1:lemma:with'
+-0.376573 O        b'-1:word:with'
+-0.386822 O        b'-1:lemma:delta'
+-0.386822 O        b'-1:word:delta'
+-0.388023 pH       b'isNumber'
+-0.388961 O        b'-1:postag:IN'
+-0.389061 O        b'-1:lemma:mm'
+-0.389061 O        b'-1:word:mM'
+-0.402376 O        b'+1:lemma:rep2'
+-0.402376 O        b'+1:word:rep2'
+-0.428619 Supp     b'+1:lemma:rifampicin'
+-0.428619 Supp     b'+1:word:rifampicin'
+-0.428641 O        b'lemma:k-12'
+-0.428641 O        b'word:K-12'
+-0.437232 O        b'-1:lemma:co2'
+-0.437232 O        b'-1:word:CO2'
+-0.452931 O        b'lemma:glucose'
+-0.452931 O        b'word:glucose'
+-0.457255 O        b'lemma:aerobically'
+-0.457255 O        b'word:aerobically'
+-0.457512 O        b'+1:lemma:for'
+-0.459154 Anti     b'+1:lemma:anti-fur'
+-0.459154 Anti     b'+1:word:anti-Fur'
+-0.468795 O        b'-1:lemma:dissolve'
+-0.468795 O        b'+1:lemma:methanol'
+-0.468795 O        b'-1:word:dissolved'
+-0.468795 O        b'+1:word:methanol'
+-0.471109 Supp     b'lemma:and'
+-0.471109 Supp     b'word:and'
+-0.472339 O        b'lemma:aerobic'
+-0.475261 O        b'lemma:0.3'
+-0.475261 O        b'word:0.3'
+-0.483590 Air      b'postag:CD'
+-0.483923 O        b'+1:postag:-RRB-'
+-0.497463 Med      b'-1:postag:NN'
+-0.499049 Supp     b'-1:lemma:-lrb-'
+-0.499049 Supp     b'-1:word:-LRB-'
+-0.501219 O        b'+1:lemma:1m'
+-0.501219 O        b'+1:word:1M'
+-0.502085 Supp     b'+1:postag::'
+-0.515749 Supp     b'+1:postag:VBN'
+-0.519934 O        b'+1:lemma:supplement'
+-0.519934 O        b'+1:word:supplemented'
+-0.531150 O        b'+1:lemma:until'
+-0.531150 O        b'+1:word:until'
+-0.531590 O        b'lemma:methanol'
+-0.531590 O        b'word:methanol'
+-0.534769 O        b'lemma:medium'
+-0.534769 O        b'word:medium'
+-0.537022 O        b'lemma:fructose'
+-0.537022 O        b'word:fructose'
+-0.537520 O        b'lemma:of'
+-0.537520 O        b'word:of'
+-0.537621 O        b'+1:lemma:2.0'
+-0.537621 O        b'+1:word:2.0'
+-0.541851 O        b'+1:lemma:g/l'
+-0.541851 O        b'+1:word:g/L'
+-0.542060 Supp     b'-1:postag:-LRB-'
+-0.549971 Med      b'lemma:-lrb-'
+-0.549971 Med      b'word:-LRB-'
+-0.564385 O        b'word:cells'
+-0.577014 Anti     b'isUpper'
+-0.580839 O        b'-1:postag:JJ'
+-0.595778 Med      b'+1:postag:IN'
+-0.613291 Med      b'postag:CD'
+-0.630342 O        b'+1:word:C'
+-0.633021 O        b'lemma:purify'
+-0.636573 Supp     b'+1:lemma:acetate'
+-0.636573 Supp     b'+1:word:acetate'
+-0.639384 O        b'-1:lemma:2'
+-0.639384 O        b'-1:word:2'
+-0.641103 O        b'lemma:37'
+-0.641103 O        b'word:37'
+-0.657693 O        b'lemma:mid-log'
+-0.657693 O        b'word:mid-log'
+-0.669108 O        b'-1:lemma:chip-exo'
+-0.676699 O        b'-1:lemma:rpob'
+-0.676699 O        b'-1:word:RpoB'
+-0.683926 Supp     b'+1:lemma:fructose'
+-0.683926 Supp     b'+1:word:fructose'
+-0.696629 O        b'lemma:\xce\xb4fur'
+-0.696629 O        b'word:\xce\x94fur'
+-0.716858 Med      b'postag:-LRB-'
+-0.717563 O        b'-1:lemma:37'
+-0.717563 O        b'-1:word:37'
+-0.742255 pH       b'isUpper'
+-0.751253 Air      b'postag:NN'
+-0.760807 O        b'-1:lemma:\xe2\x88\x86'
+-0.760807 O        b'-1:word:\xe2\x88\x86'
+-0.762242 O        b'lemma:30'
+-0.762242 O        b'word:30'
+-0.778777 O        b'+1:lemma:mm'
+-0.778777 O        b'+1:word:mM'
+-0.782724 O        b'lemma:nitrate'
+-0.782724 O        b'word:nitrate'
+-0.783200 O        b'-1:lemma:1'
+-0.783200 O        b'-1:word:1'
+-0.788591 Phase    b'isUpper'
+-0.789080 O        b'-1:lemma:30'
+-0.789080 O        b'-1:word:30'
+-0.790624 Supp     b'postag:CC'
+-0.796125 Gtype    b'postag:VBG'
+-0.802899 O        b'-1:lemma:nsrr'
+-0.802899 O        b'-1:word:NsrR'
+-0.828431 Gtype    b'postag::'
+-0.831044 O        b'lemma:2h'
+-0.831044 O        b'-1:lemma:additional'
+-0.831044 O        b'word:2h'
+-0.831044 O        b'-1:word:additional'
+-0.839187 O        b'lemma:media'
+-0.839187 O        b'word:media'
+-0.840728 Supp     b'postag::'
+-0.863650 Air      b'-1:lemma:or'
+-0.863650 Air      b'-1:word:or'
+-0.885820 Temp     b'postag:NN'
+-0.897688 Med      b'-1:postag:CD'
+-0.900253 pH       b'isLower'
+-0.911088 O        b'-1:lemma:until'
+-0.911088 O        b'-1:word:until'
+-0.944420 O        b'+1:word:ChIP-exo'
+-0.948977 O        b'lemma:anaerobically'
+-0.948977 O        b'word:anaerobically'
+-0.951515 Agit     b'isUpper'
+-0.983125 Gtype    b'isUpper'
+-0.988396 O        b'+1:lemma:at'
+-0.988396 O        b'+1:word:at'
+-0.995833 Supp     b'+1:lemma:nacl'
+-0.995833 Supp     b'+1:word:NaCl'
+-0.997040 O        b'-1:lemma:ml'
+-0.997040 O        b'-1:word:ml'
+-1.018669 Supp     b'-1:postag:NNP'
+-1.037921 O        b'lemma:nitrogen'
+-1.037921 O        b'word:nitrogen'
+-1.040146 O        b'+1:lemma:1'
+-1.040146 O        b'+1:word:1'
+-1.045534 Med      b'-1:postag:IN'
+-1.056151 O        b'word:ChIP-exo'
+-1.089520 O        b'lemma:wt'
+-1.114097 O        b'+1:lemma:+'
+-1.114097 O        b'+1:word:+'
+-1.120376 Gtype    b'isLower'
+-1.143082 O        b'-1:lemma:IP'
+-1.143082 O        b'-1:word:IP'
+-1.158305 OD       b'+1:postag:NN'
+-1.159364 O        b'-1:postag::'
+-1.163927 O        b'+1:lemma:in'
+-1.163927 O        b'+1:word:in'
+-1.192075 O        b'+1:postag:VBG'
+-1.203597 O        b'postag:RB'
+-1.328635 O        b'+1:lemma:2'
+-1.328635 O        b'+1:word:2'
+-1.418108 Technique b'isLower'
+-1.442615 O        b'-1:lemma:sample'
+-1.516830 O        b'lemma:rifampicin'
+-1.516830 O        b'word:rifampicin'
+-1.534388 Supp     b'+1:lemma:-lrb-'
+-1.534388 Supp     b'+1:word:-LRB-'
+-1.563425 Supp     b'+1:postag:-LRB-'
+-1.574320 Supp     b'postag:JJ'
+-1.581559 O        b'-1:lemma:fresh'
+-1.581559 O        b'-1:word:fresh'
+-1.612036 Gversion b'isLower'
+-1.656921 Anti     b'postag:NNP'
+-1.709765 O        b'-1:lemma:vol'
+-1.709765 O        b'-1:word:vol'
+-1.748581 Air      b'+1:postag:JJ'
+-1.800378 Technique b'isNumber'
+-1.802484 O        b'postag:VBP'
+-1.806249 Supp     b'+1:lemma:,'
+-1.806249 Supp     b'+1:postag:,'
+-1.806249 Supp     b'+1:word:,'
+-2.105469 O        b'-1:lemma:_'
+-2.105469 O        b'-1:word:_'
+-2.207206 Gtype    b'isNumber'
+-2.372723 Phase    b'-1:postag:JJ'
+-2.553668 O        b'-1:postag:VBG'
+-2.823830 O        b'-1:lemma::'
+-2.823830 O        b'-1:word::'
+-3.368572 Temp     b'+1:postag:IN'
+-3.402875 Phase    b'postag:JJ'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.10934136756341511, 'c2': 0.11233592223188592}
+best CV score:0.880070585228673
+model size: 0.16M
+
+Flat F1: 0.7987637165072743
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.962     0.981        53
+       Temp      0.909     0.690     0.784        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.556     0.362     0.439        69
+       Anti      0.917     1.000     0.957        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.882     0.788     0.832        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.848     0.791     0.819       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.850     0.758     0.799       451
+
+
+Top likely transitions:
+OD     -> OD      4.835421
+Med    -> Med     4.432130
+Temp   -> Temp    4.381858
+Supp   -> Supp    4.249606
+Anti   -> Anti    4.153912
+Agit   -> Agit    3.968681
+Air    -> Air     3.831359
+Gtype  -> Gtype   3.677992
+Gversion -> Gversion 3.265155
+O      -> O       3.210778
+Phase  -> Phase   3.136151
+Technique -> Technique 2.609081
+pH     -> pH      2.036266
+Substrain -> Gtype   0.689009
+Air    -> O       0.614440
+O      -> Supp    0.599670
+O      -> Technique 0.575931
+Gtype  -> Supp    0.484890
+O      -> Gtype   0.452540
+Technique -> Air     0.313681
+Gtype  -> Air     0.150938
+Med    -> O       0.101880
+Supp   -> O       0.080361
+Gtype  -> pH      0.018366
+O      -> Strain  -0.000117
+Supp   -> Temp    -0.004625
+Air    -> Agit    -0.004733
+O      -> OD      -0.005112
+Anti   -> Med     -0.010247
+pH     -> Supp    -0.019865
+Gversion -> Air     -0.021135
+Technique -> Gversion -0.026379
+Vess   -> O       -0.027766
+Gtype  -> OD      -0.029261
+O      -> Substrain -0.033985
+Air    -> Technique -0.035861
+O      -> Phase   -0.036615
+OD     -> O       -0.041954
+Gversion -> Gtype   -0.044992
+OD     -> Supp    -0.048485
+O      -> Gversion -0.055499
+Phase  -> Gtype   -0.077815
+Anti   -> Temp    -0.081500
+Phase  -> Med     -0.087481
+Temp   -> Med     -0.102584
+Anti   -> Supp    -0.104656
+Gtype  -> Phase   -0.110657
+Supp   -> pH      -0.119733
+Agit   -> Air     -0.121190
+Gtype  -> Temp    -0.124907
+
+
+Top unlikely transitions:
+OD     -> O       -0.041954
+Gversion -> Gtype   -0.044992
+OD     -> Supp    -0.048485
+O      -> Gversion -0.055499
+Phase  -> Gtype   -0.077815
+Anti   -> Temp    -0.081500
+Phase  -> Med     -0.087481
+Temp   -> Med     -0.102584
+Anti   -> Supp    -0.104656
+Gtype  -> Phase   -0.110657
+Supp   -> pH      -0.119733
+Agit   -> Air     -0.121190
+Gtype  -> Temp    -0.124907
+OD     -> Technique -0.148325
+Supp   -> Air     -0.175860
+Anti   -> Gtype   -0.176413
+Phase  -> OD      -0.183709
+Supp   -> Anti    -0.184780
+Air    -> Med     -0.197230
+O      -> Agit    -0.219762
+Gtype  -> Gversion -0.221487
+Phase  -> Supp    -0.230211
+Air    -> Supp    -0.237948
+Phase  -> Technique -0.238586
+Gversion -> Supp    -0.239381
+Technique -> Supp    -0.246780
+Supp   -> Phase   -0.249929
+Technique -> OD      -0.257903
+Air    -> Phase   -0.275963
+Agit   -> O       -0.288627
+Anti   -> O       -0.319981
+Supp   -> Gversion -0.332251
+OD     -> Air     -0.336991
+Air    -> Temp    -0.361852
+Gtype  -> Technique -0.399331
+Supp   -> Technique -0.405956
+Phase  -> O       -0.432789
+Technique -> Gtype   -0.440396
+Supp   -> Gtype   -0.441214
+Technique -> pH      -0.443537
+Gtype  -> Anti    -0.491458
+O      -> Med     -0.522931
+Gtype  -> Med     -0.545579
+Gversion -> O       -0.619815
+O      -> Air     -0.714655
+Gtype  -> O       -0.835271
+Technique -> O       -0.871817
+Supp   -> Med     -0.890595
+Med    -> Supp    -0.986516
+Substrain -> O       -1.034601
+
+
+Top positive:
+2.709537 Gtype    b'word[:1]:\xce\x94'
+2.682016 Technique b'word[:2]:Ch'
+2.639969 O        b'word[:2]:re'
+2.530056 O        b'lemma:_'
+2.530056 O        b'word[:1]:_'
+2.530056 O        b'word:_'
+2.312646 Air      b'lemma:anaerobic'
+2.190494 O        b'lemma:2'
+2.190494 O        b'word:2'
+2.027500 O        b'word:A'
+1.983858 Air      b'word[:2]:An'
+1.950019 Air      b'word[:2]:Ae'
+1.950019 Air      b'word:Aerobic'
+1.947205 Gtype    b'lemma:wt'
+1.940543 Gtype    b'word[:1]:W'
+1.844619 Supp     b'-1:word:Cra'
+1.822143 Air      b'word[:1]:A'
+1.818988 O        b'word[:1]:S'
+1.775674 Technique b'word[:2]:RN'
+1.765741 O        b'lemma:1'
+1.765741 O        b'word:1'
+1.724942 Phase    b'lemma:mid-log'
+1.724942 Phase    b'word:mid-log'
+1.723723 Supp     b'word[:1]:I'
+1.723541 Gtype    b'word[:1]:d'
+1.713163 O        b'postag::'
+1.713163 O        b'postag[:1]::'
+1.712969 Supp     b'+1:lemma:\xc2\xb5m'
+1.712969 Supp     b'+1:word:\xc2\xb5M'
+1.705742 O        b'lemma:3'
+1.705742 O        b'word:3'
+1.679949 Gtype    b'hGreek'
+1.676513 Air      b'word[:1]:a'
+1.653704 Supp     b'-1:postag:CC'
+1.616788 O        b'-1:lemma:tag'
+1.599401 Air      b'word[:2]:an'
+1.579379 O        b'isLower'
+1.575060 O        b'-1:word:tag'
+1.543882 O        b'word[:1]:G'
+1.542332 Substrain b'word[:2]:MG'
+1.517878 Anti     b'word[:2]:an'
+1.501383 O        b'lemma:a'
+1.478818 Supp     b'word[:2]:ni'
+1.475795 Supp     b'-1:lemma:with'
+1.475795 Supp     b'-1:word:with'
+1.470736 Gtype    b'word[:2]:Fl'
+1.468144 Gversion b'word[:2]:00'
+1.466264 Gtype    b'symb'
+1.463246 Gtype    b'word[:1]:w'
+1.451800 O        b'lemma:.'
+1.451800 O        b'postag:.'
+1.451800 O        b'postag[:1]:.'
+1.451800 O        b'word:.'
+1.449609 pH       b'+1:postag:CD'
+1.443950 Supp     b'lemma:Iron'
+1.443950 Supp     b'word[:2]:Ir'
+1.443950 Supp     b'word:Iron'
+1.443950 Supp     b'+1:word:Deficient'
+1.440541 O        b'postag:IN'
+1.440541 O        b'postag[:1]:I'
+1.440541 O        b'postag[:2]:IN'
+1.432941 O        b'word[:2]:ch'
+1.423481 O        b'word[:2]:ge'
+1.416303 O        b'word[:1]:-'
+1.412935 Strain   b'+1:lemma:substr'
+1.412935 Strain   b'+1:word:substr'
+1.409982 O        b'lemma:with'
+1.409982 O        b'word:with'
+1.409286 Substrain b'word[:1]:M'
+1.405314 O        b'lemma:-'
+1.405314 O        b'word:-'
+1.400041 Technique b'word[:1]:R'
+1.397927 O        b'word[:2]:Rp'
+1.391254 O        b'word[:1]:B'
+1.385270 Technique b'word[:1]:C'
+1.383408 O        b'word[:1]:C'
+1.375474 Supp     b'lemma:pq'
+1.375474 Supp     b'word[:2]:PQ'
+1.375474 Supp     b'word:PQ'
+1.368840 Gtype    b'word[:2]:PK'
+1.361629 Supp     b'word[:2]:gl'
+1.355258 Supp     b'lemma:arginine'
+1.351941 Gtype    b'lemma:arca8myc'
+1.351941 Gtype    b'word:ArcA8myc'
+1.348800 pH       b'word[:2]:pH'
+1.345187 O        b'+1:lemma:pq'
+1.345187 O        b'+1:word:PQ'
+1.341451 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.341451 Gtype    b'-1:word:\xe2\x88\x86'
+1.330835 Supp     b'word[:2]:Fe'
+1.329888 Gtype    b'word[:1]:t'
+1.324689 O        b'-1:word:Aerobic'
+1.311273 Phase    b'word[:2]:ex'
+1.293669 Air      b'word:anaerobic'
+1.281678 OD       b'word[:1]:O'
+1.279382 Air      b'+1:postag:IN'
+1.278560 O        b'postag:CC'
+1.278560 O        b'postag[:2]:CC'
+1.274647 O        b'-1:lemma:lb'
+1.274647 O        b'-1:word:LB'
+1.273896 Phase    b'word[:1]:e'
+1.263423 O        b'word[:2]:Cr'
+1.244847 Gtype    b'word[:2]:WT'
+1.244847 Gtype    b'word:WT'
+1.236647 Gtype    b'word[:1]:F'
+1.232072 Technique b'lemma:ChIP-exo'
+1.218565 Supp     b'lemma:acetate'
+1.218565 Supp     b'word:acetate'
+1.218411 O        b'word:Cra'
+1.214505 Med      b'isUpper'
+1.210174 Gtype    b'word[:2]:Ar'
+1.197926 Supp     b'word[:1]:N'
+1.194956 Air      b'word:Anaerobic'
+1.192780 O        b'+1:word:were'
+1.191655 Supp     b'-1:lemma:Cra'
+1.188100 Med      b'word[:1]:L'
+1.185467 O        b'+1:postag:RB'
+1.185391 Gversion b'-1:lemma:nc'
+1.185391 Gversion b'-1:word:NC'
+1.182343 Med      b'word[:1]:M'
+1.178948 Gtype    b'word[:2]:cr'
+1.165949 pH       b'word[:1]:p'
+1.163893 O        b'word[:1]:R'
+1.163629 O        b'word[:1]:c'
+1.155830 Phase    b'lemma:stationary'
+1.155830 Phase    b'word:stationary'
+1.142993 O        b'+1:postag:NNP'
+1.134168 O        b'word[:1]:E'
+1.133170 O        b'-1:lemma:glucose'
+1.133170 O        b'-1:word:glucose'
+1.132500 Supp     b'word[:2]:ac'
+1.130901 O        b'+1:word:ChIP-Seq'
+1.120305 Gtype    b'lemma:flag-tag'
+1.120305 Gtype    b'-1:lemma:c-terminal'
+1.120305 Gtype    b'word:Flag-tag'
+1.120305 Gtype    b'-1:word:C-terminal'
+1.110588 Supp     b'postag:NNP'
+1.109954 Technique b'symb'
+1.108629 Supp     b'+1:lemma:1'
+1.108629 Supp     b'+1:word:1'
+1.105428 O        b'lemma:b'
+1.105428 O        b'word:B'
+1.104286 Gtype    b'lemma:type'
+1.104286 Gtype    b'word[:2]:ty'
+1.104286 Gtype    b'word:type'
+1.089168 Gtype    b'word[:1]:f'
+1.087372 Gversion b'lemma:nc'
+1.087372 Gversion b'word[:2]:NC'
+1.087372 Gversion b'word:NC'
+1.083150 O        b'-1:lemma:0.3'
+1.083150 O        b'-1:word:0.3'
+1.081216 O        b'lemma:Custom'
+1.081216 O        b'word:Custom'
+1.074470 O        b'-1:lemma:anaerobic'
+1.073417 Gtype    b'lemma:nsrr'
+1.073417 Gtype    b'word[:2]:Ns'
+1.073417 Gtype    b'word:NsrR'
+1.073408 Gtype    b'-1:postag:VBG'
+1.057426 Supp     b'lemma:rifampicin'
+1.057426 Supp     b'word:rifampicin'
+1.055166 Med      b'+1:lemma:0.4'
+1.055166 Med      b'+1:word:0.4'
+1.052666 Supp     b'word[:2]:ri'
+1.044391 Anti     b'word[:1]:a'
+1.039713 Supp     b'lemma:nacl'
+1.039713 Supp     b'word:NaCl'
+1.030612 Gversion b'lemma:asm584v2'
+1.030612 Gversion b'word[:2]:AS'
+1.030612 Gversion b'word:ASM584v2'
+1.030597 Gversion b'lemma:chip-seq'
+1.029930 Med      b'word[:1]:m'
+1.029515 Gtype    b'+1:postag::'
+1.026311 Med      b'lemma:MOPS'
+1.026311 Med      b'word[:2]:MO'
+1.026311 Med      b'word:MOPS'
+1.021842 O        b'-1:lemma:ChIP-exo'
+1.020313 Med      b'+1:postag:CD'
+1.017584 Anti     b'+1:lemma:antibody'
+1.017584 Anti     b'+1:word:antibody'
+1.017141 O        b'isNumber'
+1.015378 O        b'+1:lemma:od600'
+1.015378 O        b'+1:word:OD600'
+1.014672 Gversion b'word:ChIP-Seq'
+1.011776 Strain   b'lemma:k-12'
+1.011776 Strain   b'word[:2]:K-'
+1.011776 Strain   b'word:K-12'
+1.008575 Agit     b'+1:lemma:rpm'
+1.008575 Agit     b'+1:word:rpm'
+1.005191 O        b'word[:2]:Cu'
+1.002792 Technique b'-1:lemma:chip-exo'
+1.000546 Air      b'postag:RB'
+1.000546 Air      b'postag[:1]:R'
+1.000546 Air      b'postag[:2]:RB'
+0.992188 Supp     b'-1:lemma:+'
+0.992188 Supp     b'-1:word:+'
+0.991416 Gtype    b'word[:1]:P'
+0.986807 O        b'lemma:rpob'
+0.986807 O        b'word:RpoB'
+0.985164 Supp     b'+1:lemma:mm'
+0.985164 Supp     b'+1:word:mM'
+
+
+Top negative:
+-0.277257 O        b'-1:lemma:iptg'
+-0.277257 O        b'-1:word:IPTG'
+-0.279683 O        b'-1:lemma:37'
+-0.279683 O        b'-1:word:37'
+-0.279732 O        b'word[:2]:ce'
+-0.280808 O        b'lemma:sodium'
+-0.280808 O        b'word:Sodium'
+-0.283552 O        b'lemma:37'
+-0.283552 O        b'word[:2]:37'
+-0.283552 O        b'word:37'
+-0.285904 O        b'-1:lemma:cra'
+-0.287226 O        b'lemma:fructose'
+-0.287226 O        b'word:fructose'
+-0.287570 O        b'word[:2]:gl'
+-0.288146 O        b'+1:word:C'
+-0.288657 O        b'postag:RB'
+-0.288657 O        b'postag[:1]:R'
+-0.288657 O        b'postag[:2]:RB'
+-0.290394 O        b'+1:lemma:phosphate'
+-0.290394 O        b'+1:word:phosphate'
+-0.291469 Anti     b'+1:lemma:anti-fur'
+-0.291469 Anti     b'+1:word:anti-Fur'
+-0.291608 Med      b'-1:postag:CD'
+-0.292517 O        b'+1:lemma:antibody'
+-0.292517 O        b'+1:word:antibody'
+-0.293015 Temp     b'postag:NN'
+-0.293202 O        b'word:cells'
+-0.295080 Substrain b'isLower'
+-0.301504 Technique b'-1:postag::'
+-0.301563 O        b'+1:lemma:rep2'
+-0.301563 O        b'+1:word:rep2'
+-0.303285 Gtype    b'-1:lemma:mg1655'
+-0.303285 Gtype    b'-1:word:MG1655'
+-0.312135 pH       b'isUpper'
+-0.315986 O        b'word[:1]:\xce\x94'
+-0.318042 O        b'-1:lemma:control'
+-0.318042 O        b'-1:word:control'
+-0.320219 O        b'word[:1]:F'
+-0.320234 O        b'-1:lemma:mm'
+-0.320234 O        b'-1:word:mM'
+-0.325890 Phase    b'postag[:1]:J'
+-0.325890 Phase    b'postag[:2]:JJ'
+-0.329319 Air      b'isUpper'
+-0.337579 O        b'lemma:of'
+-0.337579 O        b'word[:2]:of'
+-0.337579 O        b'word:of'
+-0.338232 O        b'lemma:30'
+-0.338232 O        b'word:30'
+-0.338512 Gtype    b'+1:postag:CD'
+-0.340489 pH       b'isNumber'
+-0.349750 Phase    b'postag:JJ'
+-0.351290 O        b'-1:postag:IN'
+-0.351993 Gtype    b'postag[:1]:V'
+-0.351993 Gtype    b'postag[:2]:VB'
+-0.352349 OD       b'symb'
+-0.354429 Gtype    b'+1:lemma:-rrb-'
+-0.354429 Gtype    b'+1:word:-RRB-'
+-0.356978 O        b'-1:lemma:chip-exo'
+-0.365676 Air      b'postag[:1]:N'
+-0.365676 Air      b'postag[:2]:NN'
+-0.369913 O        b'+1:lemma:at'
+-0.369913 O        b'+1:word:at'
+-0.374701 Supp     b'-1:lemma:-lrb-'
+-0.374701 Supp     b'-1:word:-LRB-'
+-0.385565 Supp     b'+1:postag:VBN'
+-0.385693 O        b'word[:1]:4'
+-0.396082 Technique b'isNumber'
+-0.396613 Med      b'-1:postag:NN'
+-0.398175 O        b'word[:1]:0'
+-0.400398 Air      b'isLower'
+-0.400541 O        b'+1:lemma:1m'
+-0.400541 O        b'+1:word:1M'
+-0.406455 O        b'+1:lemma:until'
+-0.406455 O        b'+1:word:until'
+-0.406467 O        b'lemma:0.3'
+-0.406467 O        b'word:0.3'
+-0.406862 Supp     b'-1:postag:NNP'
+-0.407709 Vess     b'hUpper'
+-0.407709 Vess     b'hLower'
+-0.409808 Air      b'-1:lemma:or'
+-0.409808 Air      b'-1:word:or'
+-0.411518 Supp     b'-1:postag:-LRB-'
+-0.413893 O        b'word[:2]:mg'
+-0.416294 O        b'-1:lemma:\xe2\x88\x86'
+-0.416294 O        b'-1:word:\xe2\x88\x86'
+-0.416443 O        b'-1:lemma:dissolve'
+-0.416443 O        b'+1:lemma:methanol'
+-0.416443 O        b'-1:word:dissolved'
+-0.416443 O        b'+1:word:methanol'
+-0.416730 O        b'-1:lemma:rpob'
+-0.416730 O        b'-1:word:RpoB'
+-0.420106 O        b'lemma:mid-log'
+-0.420106 O        b'word:mid-log'
+-0.424246 Supp     b'postag:JJ'
+-0.424315 Med      b'+1:postag:IN'
+-0.425368 O        b'lemma:2h'
+-0.425368 O        b'-1:lemma:additional'
+-0.425368 O        b'word[:2]:2h'
+-0.425368 O        b'word:2h'
+-0.425368 O        b'-1:word:additional'
+-0.427387 Supp     b'postag[:1]:J'
+-0.427387 Supp     b'postag[:2]:JJ'
+-0.432272 O        b'-1:lemma:ph'
+-0.432272 O        b'-1:word:pH'
+-0.437208 Agit     b'symb'
+-0.450378 Air      b'+1:postag:JJ'
+-0.451134 Med      b'symb'
+-0.452272 O        b'-1:lemma:nsrr'
+-0.452272 O        b'-1:word:NsrR'
+-0.452987 O        b'-1:lemma:1'
+-0.452987 O        b'-1:word:1'
+-0.453419 OD       b'hUpper'
+-0.453419 OD       b'hLower'
+-0.455390 O        b'-1:lemma:30'
+-0.455390 O        b'-1:word:30'
+-0.458645 Strain   b'isLower'
+-0.473382 O        b'+1:word:ChIP-exo'
+-0.477433 O        b'word[:1]:M'
+-0.478284 Air      b'-1:postag:JJ'
+-0.481981 Med      b'-1:postag:IN'
+-0.490205 O        b'-1:lemma:final'
+-0.490205 O        b'-1:word:final'
+-0.498623 O        b'+1:lemma:mm'
+-0.498623 O        b'+1:word:mM'
+-0.504915 O        b'-1:lemma:IP'
+-0.504915 O        b'-1:word:IP'
+-0.508549 O        b'+1:postag:IN'
+-0.527183 O        b'-1:lemma:until'
+-0.527183 O        b'-1:word:until'
+-0.534060 O        b'+1:lemma:+'
+-0.534060 O        b'+1:word:+'
+-0.536386 O        b'-1:lemma:co2'
+-0.536386 O        b'-1:word:CO2'
+-0.546923 Technique b'isLower'
+-0.549653 O        b'+1:lemma:g/l'
+-0.549653 O        b'+1:word:g/L'
+-0.556331 Agit     b'hUpper'
+-0.556331 Agit     b'hLower'
+-0.566036 O        b'-1:lemma:fresh'
+-0.566036 O        b'-1:word:fresh'
+-0.589166 O        b'word[:2]:pH'
+-0.606308 Gtype    b'isNumber'
+-0.608954 O        b'-1:lemma:ml'
+-0.608954 O        b'-1:word:ml'
+-0.636500 Air      b'postag:NN'
+-0.644243 Air      b'symb'
+-0.644631 O        b'-1:lemma:sample'
+-0.645479 O        b'word[:1]:K'
+-0.647685 O        b'word[:2]:ri'
+-0.648673 Supp     b'symb'
+-0.654648 Supp     b'word[:1]:C'
+-0.655830 O        b'word[:1]:N'
+-0.669514 O        b'+1:postag:VBG'
+-0.678570 O        b'lemma:rifampicin'
+-0.678570 O        b'word:rifampicin'
+-0.685362 O        b'+1:lemma:2.0'
+-0.685362 O        b'+1:word:2.0'
+-0.697373 pH       b'isLower'
+-0.723949 O        b'+1:lemma:1'
+-0.723949 O        b'+1:word:1'
+-0.725696 O        b'word[:2]:30'
+-0.733745 O        b'word[:1]:d'
+-0.746229 Technique b'postag:NN'
+-0.746793 Anti     b'postag:NNP'
+-0.772686 Phase    b'hUpper'
+-0.772686 Phase    b'hLower'
+-0.779562 Supp     b'+1:lemma:-lrb-'
+-0.779562 Supp     b'+1:word:-LRB-'
+-0.785425 O        b'lemma:wt'
+-0.793464 Supp     b'+1:postag:-LRB-'
+-0.807612 O        b'+1:lemma:in'
+-0.807612 O        b'+1:word:in'
+-0.809771 O        b'-1:lemma:2'
+-0.809771 O        b'-1:word:2'
+-0.827384 O        b'word[:2]:me'
+-0.843493 O        b'word[:2]:fl'
+-0.892217 Temp     b'+1:postag:IN'
+-0.911652 O        b'word[:2]:ni'
+-0.928268 O        b'-1:lemma:vol'
+-0.928268 O        b'-1:word:vol'
+-0.929689 Gversion b'isLower'
+-0.937497 Phase    b'-1:postag:JJ'
+-0.939661 Supp     b'+1:lemma:,'
+-0.939661 Supp     b'+1:postag:,'
+-0.939661 Supp     b'+1:word:,'
+-0.945384 Supp     b'hGreek'
+-1.033862 O        b'+1:lemma:2'
+-1.033862 O        b'+1:word:2'
+-1.049369 O        b'postag:VBP'
+-1.064806 Gtype    b'word[:1]:C'
+-1.103635 OD       b'+1:postag:NN'
+-1.146336 Gtype    b'isUpper'
+-1.184986 O        b'-1:postag::'
+-1.221339 O        b'word[:1]:P'
+-1.586036 O        b'word[:2]:Ch'
+-1.596486 O        b'-1:postag:VBG'
+-1.615380 O        b'-1:lemma:_'
+-1.615380 O        b'-1:word:_'
+-1.888889 O        b'-1:lemma::'
+-1.888889 O        b'-1:word::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.10224977118326696, 'c2': 0.08574073868552615}
+best CV score:0.8625521557665096
+model size: 0.15M
+
+Flat F1: 0.7911337627473737
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.962     0.981        53
+       Temp      1.000     0.621     0.766        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.880     0.776     0.825        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.820     0.784     0.802       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.847     0.749     0.791       451
+
+
+Top likely transitions:
+Supp   -> Supp    4.853883
+Med    -> Med     4.656088
+Temp   -> Temp    4.510100
+Agit   -> Agit    4.465117
+OD     -> OD      4.340142
+Anti   -> Anti    4.196466
+Air    -> Air     3.821484
+Gtype  -> Gtype   3.782966
+Gversion -> Gversion 3.606921
+O      -> O       3.495921
+Phase  -> Phase   3.323762
+Technique -> Technique 2.563651
+pH     -> pH      2.180795
+O      -> Supp    0.898100
+Substrain -> Gtype   0.754641
+Air    -> O       0.647741
+O      -> Technique 0.571928
+O      -> Gtype   0.481770
+Supp   -> O       0.402376
+Gtype  -> Supp    0.324453
+Med    -> O       0.307057
+Technique -> Air     0.224294
+Gtype  -> Air     0.168729
+O      -> Anti    0.038118
+O      -> Temp    0.032123
+Gtype  -> pH      0.002908
+Temp   -> O       0.000361
+Strain -> O       0.000160
+Technique -> Gversion -0.000416
+Air    -> Agit    -0.005831
+Supp   -> pH      -0.007270
+OD     -> O       -0.014197
+Gversion -> Supp    -0.015735
+Gtype  -> OD      -0.028160
+Supp   -> Phase   -0.029631
+Anti   -> Temp    -0.035006
+Phase  -> Gtype   -0.044350
+OD     -> Supp    -0.044521
+Gtype  -> Temp    -0.059821
+Temp   -> Med     -0.060792
+Gtype  -> Phase   -0.069441
+OD     -> Technique -0.077261
+Air    -> Technique -0.079069
+O      -> Agit    -0.096763
+Anti   -> Supp    -0.100222
+Phase  -> OD      -0.103283
+Supp   -> Gversion -0.124409
+Anti   -> Air     -0.126752
+O      -> OD      -0.131232
+Supp   -> Anti    -0.144899
+
+
+Top unlikely transitions:
+OD     -> O       -0.014197
+Gversion -> Supp    -0.015735
+Gtype  -> OD      -0.028160
+Supp   -> Phase   -0.029631
+Anti   -> Temp    -0.035006
+Phase  -> Gtype   -0.044350
+OD     -> Supp    -0.044521
+Gtype  -> Temp    -0.059821
+Temp   -> Med     -0.060792
+Gtype  -> Phase   -0.069441
+OD     -> Technique -0.077261
+Air    -> Technique -0.079069
+O      -> Agit    -0.096763
+Anti   -> Supp    -0.100222
+Phase  -> OD      -0.103283
+Supp   -> Gversion -0.124409
+Anti   -> Air     -0.126752
+O      -> OD      -0.131232
+Supp   -> Anti    -0.144899
+Agit   -> Air     -0.145881
+Supp   -> Air     -0.148035
+Anti   -> Gtype   -0.148967
+Phase  -> O       -0.182539
+Gtype  -> Gversion -0.218235
+Phase  -> Supp    -0.220677
+Agit   -> O       -0.221526
+Supp   -> Technique -0.230155
+Air    -> Med     -0.252173
+Anti   -> O       -0.256819
+Technique -> Supp    -0.258507
+Phase  -> Technique -0.308300
+O      -> Med     -0.322260
+Air    -> Phase   -0.344611
+OD     -> Air     -0.369099
+Air    -> Supp    -0.381831
+Technique -> OD      -0.386625
+Supp   -> Gtype   -0.423661
+Gversion -> O       -0.442929
+Gtype  -> Med     -0.466529
+Gtype  -> Technique -0.486041
+Air    -> Temp    -0.495035
+Technique -> Gtype   -0.512140
+O      -> Air     -0.557928
+Gtype  -> Anti    -0.639624
+Supp   -> Med     -0.666805
+Technique -> pH      -0.687130
+Technique -> O       -0.804221
+Gtype  -> O       -0.839737
+Substrain -> O       -1.005940
+Med    -> Supp    -1.140134
+
+
+Top positive:
+2.992522 O        b'postag:IN'
+2.933510 Gtype    b'lemma[:1]:\xce\xb4'
+2.698175 O        b'lemma:_'
+2.698175 O        b'lemma[:1]:_'
+2.698175 O        b'word:_'
+2.580892 Technique b'lemma[:2]:Ch'
+2.528828 Air      b'lemma[:2]:an'
+2.520301 O        b'postag::'
+2.475598 Air      b'word:Aerobic'
+2.397019 O        b'lemma[:2]:re'
+2.343308 O        b'lemma:2'
+2.343308 O        b'word:2'
+2.187375 OD       b'lemma[:1]:o'
+2.132214 Air      b'lemma:anaerobic'
+2.102690 O        b'lemma:1'
+2.102690 O        b'word:1'
+2.069208 Air      b'postag:RB'
+2.011921 Supp     b'-1:word:Cra'
+2.008921 O        b'postag:CC'
+1.985815 O        b'word:Cra'
+1.954962 O        b'word:A'
+1.945886 O        b'-1:lemma:tag'
+1.944651 Air      b'lemma[:1]:a'
+1.942100 Gtype    b'lemma[:1]:w'
+1.941658 O        b'isLower'
+1.941416 O        b'lemma:3'
+1.941416 O        b'word:3'
+1.928794 Anti     b'lemma[:2]:an'
+1.904875 O        b'lemma:-'
+1.904875 O        b'word:-'
+1.894461 Air      b'lemma[:2]:ae'
+1.837551 Supp     b'+1:lemma:\xc2\xb5m'
+1.837551 Supp     b'+1:word:\xc2\xb5M'
+1.827021 O        b'lemma:with'
+1.827021 O        b'word:with'
+1.820722 O        b'lemma:.'
+1.820722 O        b'postag:.'
+1.820722 O        b'word:.'
+1.782610 Phase    b'lemma:mid-log'
+1.782610 Phase    b'word:mid-log'
+1.757467 Technique b'lemma:chipseq'
+1.743523 Technique b'lemma[:1]:C'
+1.733249 Technique b'word:ChIPSeq'
+1.723058 O        b'-1:word:tag'
+1.679894 Gtype    b'lemma[:2]:pk'
+1.670517 Technique b'lemma[:2]:rn'
+1.646145 O        b'lemma[:2]:ge'
+1.642888 Gtype    b'word:WT'
+1.641812 Air      b'word:Anaerobic'
+1.636107 Supp     b'lemma:pq'
+1.636107 Supp     b'lemma[:2]:pq'
+1.636107 Supp     b'word:PQ'
+1.616520 Gtype    b'lemma:wt'
+1.616520 Gtype    b'lemma[:2]:wt'
+1.602692 Substrain b'lemma[:2]:mg'
+1.595791 Gtype    b'symb'
+1.591226 Gtype    b'hGreek'
+1.580745 Gtype    b'lemma[:2]:ar'
+1.553690 O        b'isNumber'
+1.549681 Supp     b'-1:lemma:with'
+1.549681 Supp     b'-1:word:with'
+1.538810 Med      b'isUpper'
+1.524255 Supp     b'lemma:Iron'
+1.524255 Supp     b'lemma[:2]:Ir'
+1.524255 Supp     b'word:Iron'
+1.524255 Supp     b'+1:word:Deficient'
+1.523875 Med      b'lemma[:1]:m'
+1.507350 Supp     b'lemma:arginine'
+1.506721 O        b'-1:word:Aerobic'
+1.504743 O        b'lemma:b'
+1.504743 O        b'word:B'
+1.503810 O        b'+1:lemma:pq'
+1.503810 O        b'+1:word:PQ'
+1.485328 Gtype    b'lemma:arca8myc'
+1.485328 Gtype    b'word:ArcA8myc'
+1.478520 Phase    b'lemma[:2]:ex'
+1.477705 Supp     b'-1:postag:CC'
+1.473033 Strain   b'+1:lemma:substr'
+1.473033 Strain   b'+1:word:substr'
+1.471852 O        b'lemma[:1]:h'
+1.470534 Gtype    b'lemma[:1]:f'
+1.432902 Technique b'word:ChIP-Seq'
+1.432272 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.432272 Gtype    b'-1:word:\xe2\x88\x86'
+1.431861 Supp     b'lemma:acetate'
+1.431861 Supp     b'word:acetate'
+1.426205 pH       b'+1:postag:CD'
+1.426130 O        b'lemma:a'
+1.423474 Phase    b'lemma[:1]:e'
+1.416394 Gtype    b'lemma[:2]:cr'
+1.412091 O        b'-1:lemma:lb'
+1.412091 O        b'-1:word:LB'
+1.409559 O        b'+1:postag:NNP'
+1.396235 Supp     b'-1:lemma:Cra'
+1.391229 Technique b'lemma:ChIP-exo'
+1.387275 Supp     b'lemma[:2]:gl'
+1.381222 O        b'postag:VBN'
+1.357861 Technique b'lemma[:2]:ch'
+1.349464 O        b'-1:lemma:ChIP-exo'
+1.337510 Supp     b'lemma:rifampicin'
+1.337510 Supp     b'word:rifampicin'
+1.333930 Supp     b'lemma[:2]:ri'
+1.331717 Supp     b'lemma[:2]:ni'
+1.308373 Air      b'+1:postag:IN'
+1.302031 Gtype    b'lemma[:2]:de'
+1.301579 Supp     b'lemma[:1]:I'
+1.295057 Gtype    b'lemma:type'
+1.295057 Gtype    b'lemma[:2]:ty'
+1.295057 Gtype    b'word:type'
+1.293141 Technique b'symb'
+1.290443 Air      b'-1:lemma:ChIP-Seq'
+1.290443 Air      b'-1:word:ChIP-Seq'
+1.286791 Gversion b'lemma[:2]:00'
+1.282084 pH       b'lemma[:2]:ph'
+1.264843 Gversion b'word:ChIP-Seq'
+1.249803 Supp     b'lemma[:2]:ac'
+1.237133 O        b'postag:DT'
+1.232242 Gversion b'lemma:chip-seq'
+1.230130 Gversion b'-1:lemma:nc'
+1.230130 Gversion b'-1:word:NC'
+1.230000 O        b'lemma:rpob'
+1.230000 O        b'word:RpoB'
+1.206427 Air      b'lemma:Aerobic'
+1.206427 Air      b'lemma[:2]:Ae'
+1.198600 Technique b'-1:lemma:chip-exo'
+1.196166 Phase    b'lemma:stationary'
+1.196166 Phase    b'word:stationary'
+1.186607 Supp     b'-1:lemma:vol'
+1.186607 Supp     b'-1:word:vol'
+1.185194 Gtype    b'-1:postag:VBG'
+1.185039 Gversion b'lemma:nc'
+1.185039 Gversion b'lemma[:2]:nc'
+1.185039 Gversion b'word:NC'
+1.183740 O        b'-1:lemma:0.3'
+1.183740 O        b'-1:word:0.3'
+1.183722 Substrain b'lemma[:1]:m'
+1.178060 Med      b'lemma:MOPS'
+1.178060 Med      b'lemma[:1]:M'
+1.178060 Med      b'lemma[:2]:MO'
+1.178060 Med      b'word:MOPS'
+1.176455 Agit     b'+1:lemma:rpm'
+1.176455 Agit     b'+1:word:rpm'
+1.173660 Air      b'lemma[:1]:A'
+1.171020 O        b'lemma[:1]:C'
+1.169586 O        b'lemma:Custom'
+1.169586 O        b'lemma[:2]:Cu'
+1.169586 O        b'word:Custom'
+1.169290 Supp     b'lemma[:1]:n'
+1.164574 O        b'lemma[:1]:r'
+1.163122 O        b'+1:word:were'
+1.161543 O        b'+1:postag:RB'
+1.160553 Med      b'+1:lemma:0.4'
+1.160553 Med      b'+1:word:0.4'
+1.157301 Gtype    b'lemma[:1]:t'
+1.139447 O        b'-1:lemma:glucose'
+1.139447 O        b'-1:word:glucose'
+1.136363 Gtype    b'lemma[:1]:W'
+1.123777 Gversion b'lemma:asm584v2'
+1.123777 Gversion b'word:ASM584v2'
+1.122043 Gversion b'lemma[:2]:as'
+1.119834 Technique b'word:ChIP-exo'
+1.116571 Supp     b'+1:lemma:1'
+1.116571 Supp     b'+1:word:1'
+1.109080 O        b'-1:lemma:anaerobic'
+1.107414 O        b'lemma:ompr'
+1.107414 O        b'word:OmpR'
+1.104893 Gtype    b'+1:lemma:type'
+1.104893 Gtype    b'+1:word:type'
+1.101638 O        b'lemma:chip'
+1.101186 Temp     b'isUpper'
+1.098068 Gtype    b'lemma:nsrr'
+1.098068 Gtype    b'lemma[:2]:ns'
+1.098068 Gtype    b'word:NsrR'
+1.097533 Strain   b'lemma:k-12'
+1.097533 Strain   b'lemma[:2]:k-'
+1.097533 Strain   b'word:K-12'
+1.094717 Agit     b'lemma:rpm'
+1.094717 Agit     b'word:rpm'
+1.093697 Anti     b'+1:lemma:antibody'
+1.093697 Anti     b'+1:word:antibody'
+1.090349 Supp     b'-1:lemma:+'
+1.090349 Supp     b'-1:word:+'
+1.089812 Med      b'lemma:broth'
+1.089812 Med      b'-1:lemma:L'
+1.089812 Med      b'lemma[:2]:br'
+1.089812 Med      b'word:broth'
+1.089812 Med      b'-1:word:L'
+1.089439 O        b'lemma[:1]:s'
+1.089354 Supp     b'lemma:glucose'
+1.089354 Supp     b'word:glucose'
+1.075102 Gtype    b'-1:lemma:_'
+1.075102 Gtype    b'-1:word:_'
+1.074174 OD       b'-1:postag:IN'
+1.069035 Air      b'-1:lemma:-'
+1.069035 Air      b'-1:word:-'
+1.064267 O        b'lemma[:2]:om'
+1.059425 Med      b'-1:lemma:ml'
+1.059425 Med      b'-1:word:ml'
+1.055151 O        b'lemma[:2]:ga'
+1.051054 Temp     b'isNumber'
+
+
+Top negative:
+-0.269566 Med      b'+1:postag:NN'
+-0.271003 O        b'+1:word:C'
+-0.272991 Gtype    b'lemma[:1]:g'
+-0.281915 Substrain b'isLower'
+-0.285097 Supp     b'+1:lemma:acetate'
+-0.285097 Supp     b'+1:word:acetate'
+-0.289196 O        b'-1:lemma:control'
+-0.289196 O        b'-1:word:control'
+-0.291783 O        b'lemma:30'
+-0.291783 O        b'word:30'
+-0.296669 Supp     b'+1:lemma:nacl'
+-0.296669 Supp     b'+1:word:NaCl'
+-0.299139 Gtype    b'lemma[:2]:rp'
+-0.299802 Supp     b'lemma[:1]:a'
+-0.300346 Supp     b'isNumber'
+-0.302212 Anti     b'+1:lemma:anti-fur'
+-0.302212 Anti     b'+1:word:anti-Fur'
+-0.302389 O        b'+1:lemma:rep2'
+-0.302389 O        b'+1:word:rep2'
+-0.302698 O        b'lemma:methanol'
+-0.302698 O        b'word:methanol'
+-0.303420 Supp     b'+1:lemma:fructose'
+-0.303420 Supp     b'+1:word:fructose'
+-0.305531 O        b'lemma:aerobically'
+-0.305531 O        b'word:aerobically'
+-0.306175 pH       b'isNumber'
+-0.306838 O        b'lemma[:1]:d'
+-0.308262 Gtype    b'+1:lemma:-rrb-'
+-0.308262 Gtype    b'+1:word:-RRB-'
+-0.312558 O        b'-1:lemma:mm'
+-0.312558 O        b'-1:word:mM'
+-0.313202 O        b'-1:postag:-LRB-'
+-0.317810 O        b'lemma:of'
+-0.317810 O        b'lemma[:2]:of'
+-0.317810 O        b'word:of'
+-0.319439 O        b'-1:lemma:final'
+-0.319439 O        b'-1:word:final'
+-0.321317 O        b'lemma:anaerobically'
+-0.321317 O        b'word:anaerobically'
+-0.325460 O        b'lemma[:1]:L'
+-0.330481 O        b'lemma[:1]:A'
+-0.332032 O        b'+1:lemma:at'
+-0.332032 O        b'+1:word:at'
+-0.333829 OD       b'hUpper'
+-0.333829 OD       b'hLower'
+-0.334342 O        b'lemma[:1]:\xce\xb4'
+-0.338105 O        b'-1:lemma:37'
+-0.338105 O        b'-1:word:37'
+-0.345520 O        b'lemma[:1]:4'
+-0.346277 Vess     b'hUpper'
+-0.346277 Vess     b'hLower'
+-0.351779 O        b'-1:lemma:cra'
+-0.354108 Supp     b'-1:lemma:-lrb-'
+-0.354108 Supp     b'-1:word:-LRB-'
+-0.354176 O        b'lemma:0.3'
+-0.354176 O        b'word:0.3'
+-0.357826 O        b'+1:lemma:1m'
+-0.357826 O        b'+1:word:1M'
+-0.365975 O        b'-1:lemma:rpob'
+-0.365975 O        b'-1:word:RpoB'
+-0.369791 Supp     b'lemma[:2]:an'
+-0.382535 Technique b'-1:postag::'
+-0.385806 O        b'-1:lemma:ph'
+-0.385806 O        b'-1:word:pH'
+-0.390600 Strain   b'isLower'
+-0.390996 Med      b'+1:postag:IN'
+-0.397681 Technique b'isUpper'
+-0.402341 O        b'lemma[:2]:ph'
+-0.407916 O        b'-1:lemma:nsrr'
+-0.407916 O        b'-1:word:NsrR'
+-0.408181 pH       b'isUpper'
+-0.408383 O        b'lemma[:1]:p'
+-0.410419 O        b'-1:lemma:dissolve'
+-0.410419 O        b'+1:lemma:methanol'
+-0.410419 O        b'-1:word:dissolved'
+-0.410419 O        b'+1:word:methanol'
+-0.411632 O        b'+1:lemma:until'
+-0.411632 O        b'+1:word:until'
+-0.422310 O        b'+1:postag:IN'
+-0.422805 O        b'lemma:wt'
+-0.422805 O        b'lemma[:2]:wt'
+-0.429703 Air      b'-1:lemma:or'
+-0.429703 Air      b'-1:word:or'
+-0.430609 O        b'lemma:soxs-8myc'
+-0.430609 O        b'word:soxS-8myc'
+-0.437708 O        b'word:cells'
+-0.439438 Supp     b'-1:postag:-LRB-'
+-0.443616 O        b'lemma[:2]:mg'
+-0.447807 O        b'-1:postag:IN'
+-0.454881 Technique b'postag:NN'
+-0.455283 O        b'-1:lemma:30'
+-0.455283 O        b'-1:word:30'
+-0.455942 Med      b'-1:postag:CD'
+-0.456974 O        b'-1:lemma:chip-exo'
+-0.463642 O        b'lemma:2h'
+-0.463642 O        b'-1:lemma:additional'
+-0.463642 O        b'lemma[:2]:2h'
+-0.463642 O        b'word:2h'
+-0.463642 O        b'-1:word:additional'
+-0.463824 O        b'lemma[:2]:ni'
+-0.473738 O        b'-1:lemma:\xe2\x88\x86'
+-0.473738 O        b'-1:word:\xe2\x88\x86'
+-0.483472 Air      b'-1:postag:JJ'
+-0.485640 O        b'lemma[:1]:k'
+-0.489700 Agit     b'symb'
+-0.491876 O        b'lemma[:2]:gl'
+-0.493145 O        b'-1:lemma:1'
+-0.493145 O        b'-1:word:1'
+-0.493324 Supp     b'lemma[:1]:s'
+-0.495721 O        b'-1:lemma:until'
+-0.495721 O        b'-1:word:until'
+-0.510059 O        b'+1:word:ChIP-exo'
+-0.532260 Supp     b'-1:postag:NNP'
+-0.532617 O        b'lemma:mid-log'
+-0.532617 O        b'word:mid-log'
+-0.538747 O        b'lemma[:2]:ar'
+-0.539864 Temp     b'postag:NN'
+-0.544326 Gtype    b'postag::'
+-0.550034 O        b'lemma[:1]:n'
+-0.552433 Technique b'isNumber'
+-0.552875 O        b'-1:lemma:co2'
+-0.552875 O        b'-1:word:CO2'
+-0.553836 O        b'+1:lemma:mm'
+-0.553836 O        b'+1:word:mM'
+-0.575360 Agit     b'hUpper'
+-0.575360 Agit     b'hLower'
+-0.587589 O        b'+1:lemma:2.0'
+-0.587589 O        b'+1:word:2.0'
+-0.589156 Air      b'symb'
+-0.593266 O        b'-1:lemma:IP'
+-0.593266 O        b'-1:word:IP'
+-0.606709 O        b'+1:lemma:+'
+-0.606709 O        b'+1:word:+'
+-0.623013 O        b'word:ChIP-exo'
+-0.624809 Med      b'-1:postag:IN'
+-0.644672 Med      b'symb'
+-0.652610 O        b'lemma[:2]:an'
+-0.663037 O        b'+1:postag:VBG'
+-0.669924 Air      b'isLower'
+-0.670219 O        b'+1:lemma:g/l'
+-0.670219 O        b'+1:word:g/L'
+-0.695683 pH       b'isLower'
+-0.700730 O        b'-1:lemma:ml'
+-0.700730 O        b'-1:word:ml'
+-0.708528 Technique b'isLower'
+-0.713532 Gtype    b'lemma[:1]:c'
+-0.723267 O        b'postag:VBP'
+-0.726763 Med      b'-1:postag:NN'
+-0.730007 O        b'-1:lemma:fresh'
+-0.730007 O        b'-1:word:fresh'
+-0.732472 Gtype    b'isNumber'
+-0.754791 Anti     b'postag:NNP'
+-0.763751 O        b'lemma[:1]:I'
+-0.765472 Phase    b'hUpper'
+-0.765472 Phase    b'hLower'
+-0.777034 O        b'postag:RB'
+-0.783888 O        b'+1:lemma:1'
+-0.783888 O        b'+1:word:1'
+-0.819356 Supp     b'+1:postag:VBN'
+-0.832076 Supp     b'+1:postag:-LRB-'
+-0.834887 Supp     b'+1:lemma:-lrb-'
+-0.834887 Supp     b'+1:word:-LRB-'
+-0.845588 O        b'lemma[:2]:ri'
+-0.859382 O        b'+1:lemma:in'
+-0.859382 O        b'+1:word:in'
+-0.863969 O        b'-1:lemma:2'
+-0.863969 O        b'-1:word:2'
+-0.863985 Supp     b'postag:JJ'
+-0.879910 O        b'lemma:rifampicin'
+-0.879910 O        b'word:rifampicin'
+-0.890013 O        b'-1:lemma:sample'
+-0.908122 O        b'lemma[:2]:me'
+-0.918685 O        b'lemma[:2]:30'
+-0.977725 Supp     b'symb'
+-0.998621 Gtype    b'lemma[:1]:a'
+-1.009514 O        b'lemma[:2]:ae'
+-1.010867 Supp     b'lemma[:1]:c'
+-1.019909 Supp     b'hGreek'
+-1.025689 Gversion b'isLower'
+-1.028787 O        b'-1:postag::'
+-1.033347 Gtype    b'lemma[:1]:r'
+-1.058669 Phase    b'postag:JJ'
+-1.063118 OD       b'+1:postag:NN'
+-1.085470 O        b'+1:lemma:2'
+-1.085470 O        b'+1:word:2'
+-1.097595 Temp     b'+1:postag:IN'
+-1.104571 O        b'-1:lemma:vol'
+-1.104571 O        b'-1:word:vol'
+-1.105747 Phase    b'-1:postag:JJ'
+-1.193803 Supp     b'+1:lemma:,'
+-1.193803 Supp     b'+1:postag:,'
+-1.193803 Supp     b'+1:word:,'
+-1.225152 Gtype    b'isUpper'
+-1.342867 Air      b'postag:NN'
+-1.648816 O        b'-1:postag:VBG'
+-1.734459 O        b'-1:lemma:_'
+-1.734459 O        b'-1:word:_'
+-1.809222 O        b'lemma[:2]:fl'
+-2.034354 O        b'-1:lemma::'
+-2.034354 O        b'-1:word::'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.08547853139018363, 'c2': 0.0718223925603791}
+best CV score:0.8618282789423788
+model size: 0.12M
+
+Flat F1: 0.7935612512742225
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.870     0.930        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.828     0.906        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.545     0.348     0.425        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.847     0.847     0.847        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.764     0.799     0.781       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.825     0.772     0.794       451
+
+
+Top likely transitions:
+Temp   -> Temp    4.726292
+Med    -> Med     4.671738
+Supp   -> Supp    4.522188
+Agit   -> Agit    4.377673
+OD     -> OD      4.308572
+Gversion -> Gversion 3.866864
+O      -> O       3.748552
+Air    -> Air     3.677475
+Anti   -> Anti    3.637881
+Phase  -> Phase   3.501884
+Gtype  -> Gtype   3.413911
+Technique -> Technique 2.611020
+pH     -> pH      2.492174
+Substrain -> Gtype   1.323299
+O      -> Supp    1.082471
+Gtype  -> Supp    1.059136
+Air    -> O       1.056595
+O      -> Technique 0.788425
+Gtype  -> Air     0.726982
+Supp   -> O       0.721855
+Technique -> Air     0.676898
+Med    -> O       0.566862
+Temp   -> O       0.505913
+Gtype  -> pH      0.499557
+O      -> Gtype   0.492671
+O      -> Temp    0.193445
+OD     -> O       0.066099
+O      -> Phase   0.015467
+Phase  -> O       0.005269
+O      -> Anti    0.001662
+O      -> Med     0.000880
+Phase  -> Technique -0.000017
+Gversion -> Technique -0.000081
+Supp   -> Gversion -0.001487
+Supp   -> Temp    -0.006942
+Anti   -> Air     -0.014046
+OD     -> Med     -0.020526
+Air    -> Temp    -0.030082
+O      -> Strain  -0.036678
+Strain -> Supp    -0.037261
+Anti   -> Technique -0.039379
+O      -> Agit    -0.039632
+Anti   -> O       -0.064909
+Med    -> Gtype   -0.069251
+Gversion -> Air     -0.073290
+Supp   -> Anti    -0.079850
+Air    -> Phase   -0.086231
+Gtype  -> Agit    -0.087068
+Technique -> Med     -0.107591
+Temp   -> Supp    -0.117927
+
+
+Top unlikely transitions:
+Gtype  -> Agit    -0.087068
+Technique -> Med     -0.107591
+Temp   -> Supp    -0.117927
+Phase  -> Med     -0.126236
+Agit   -> Supp    -0.127001
+Air    -> Technique -0.146743
+Gtype  -> Phase   -0.148852
+Gversion -> O       -0.153972
+Temp   -> Air     -0.155016
+Gversion -> Gtype   -0.163400
+Supp   -> pH      -0.165945
+Technique -> OD      -0.170573
+Gtype  -> OD      -0.180802
+Supp   -> OD      -0.185729
+Agit   -> O       -0.186520
+Gtype  -> Temp    -0.191678
+Temp   -> Med     -0.203334
+Anti   -> Med     -0.213478
+Med    -> Air     -0.254265
+Supp   -> Phase   -0.272052
+O      -> OD      -0.284249
+Air    -> Agit    -0.299878
+Gtype  -> Gversion -0.302074
+Technique -> O       -0.304509
+Supp   -> Technique -0.323807
+Gversion -> Supp    -0.330543
+OD     -> Supp    -0.332686
+Supp   -> Air     -0.350244
+Agit   -> Air     -0.351443
+Air    -> Med     -0.356425
+pH     -> Supp    -0.356600
+Phase  -> Supp    -0.367295
+Anti   -> Supp    -0.388606
+Anti   -> Gtype   -0.420057
+Gtype  -> Anti    -0.437171
+Gtype  -> O       -0.469909
+Air    -> Gtype   -0.491506
+Air    -> Supp    -0.517679
+Supp   -> Gtype   -0.551144
+Technique -> Supp    -0.555659
+OD     -> Air     -0.572756
+Gtype  -> Technique -0.574688
+O      -> Air     -0.585607
+Phase  -> OD      -0.592622
+Technique -> pH      -0.602711
+Supp   -> Med     -0.656480
+Gtype  -> Med     -0.782031
+Substrain -> O       -1.224113
+Technique -> Gtype   -1.370410
+Med    -> Supp    -1.466233
+
+
+Top positive:
+4.763784 O        b'lemma:2'
+4.403357 O        b'lemma:1'
+4.351529 O        b'lemma:_'
+4.235059 Anti     b'-2:lemma:antibody'
+4.043801 O        b'-2:lemma:_'
+3.996162 Air      b'lemma:anaerobic'
+3.806351 Gtype    b'lemma:wt'
+3.749108 O        b'postag:IN'
+3.736227 Supp     b'lemma:pq'
+3.494745 Air      b'lemma:Aerobic'
+3.463151 Technique b'lemma:ChIP-exo'
+3.331237 Technique b'lemma:chipseq'
+3.321703 Phase    b'lemma:mid-log'
+3.250497 Gtype    b'lemma:\xce\xb4cra'
+3.170468 Supp     b'lemma:acetate'
+3.124411 O        b'lemma:3'
+3.062209 O        b'lemma:rpob'
+3.054282 Phase    b'-2:lemma:phase'
+3.044351 Gtype    b'lemma:\xe2\x88\x86'
+2.982673 O        b'postag::'
+2.975009 O        b'-2:lemma:flagtag'
+2.948451 Gtype    b'-2:lemma:genotype/variation'
+2.880650 O        b'postag:VBN'
+2.875525 O        b'lemma:.'
+2.875525 O        b'postag:.'
+2.856618 O        b'lemma:-'
+2.842211 Technique b'lemma:rna-seq'
+2.822332 O        b'lemma:b'
+2.802827 Gtype    b'lemma:type'
+2.797366 Gtype    b'-1:lemma:\xe2\x88\x86'
+2.793829 Supp     b'lemma:glucose'
+2.734817 Gtype    b'-2:lemma:genotype'
+2.701420 Supp     b'lemma:no3'
+2.661946 Air      b'lemma:aerobic'
+2.652084 Technique b'lemma:chip-seq'
+2.649025 O        b'lemma:Cra'
+2.638351 Air      b'postag:RB'
+2.590966 O        b'-1:lemma:ChIP-exo'
+2.579299 Supp     b'lemma:Iron'
+2.579299 Supp     b'-2:lemma:Anaerobic'
+2.569436 O        b'lemma:a'
+2.546577 Med      b'lemma:lb'
+2.511450 Supp     b'-1:lemma:with'
+2.503214 Supp     b'lemma:nacl'
+2.478452 Substrain b'lemma:mg1655'
+2.473536 Technique b'+2:lemma:ph5'
+2.456529 Supp     b'+1:lemma:1'
+2.452327 O        b'postag:CC'
+2.423475 Gtype    b'lemma:\xce\xb4fur'
+2.368070 Gtype    b'lemma:\xce\xb4soxr'
+2.360449 Gtype    b'lemma:wild-type'
+2.352917 Supp     b'lemma:nh4cl'
+2.349539 O        b'+2:lemma:\xc2\xb0c'
+2.337254 Med      b'lemma:MOPS'
+2.321526 Gtype    b'lemma:flag-tag'
+2.321526 Gtype    b'-1:lemma:c-terminal'
+2.314837 O        b'lemma:CEL'
+2.294955 Gtype    b'+1:lemma:with'
+2.257644 Gtype    b'+1:lemma:type'
+2.196496 Supp     b'+2:lemma:iptg'
+2.196469 Supp     b'-1:lemma:Cra'
+2.175786 Phase    b'-1:lemma:mid-log'
+2.173685 O        b'postag:VBG'
+2.163806 pH       b'+1:postag:CD'
+2.100627 O        b'lemma:with'
+2.088770 Gversion b'lemma:chip-seq'
+2.085539 O        b'-1:lemma:tag'
+2.069738 O        b'lemma:rep2'
+2.069674 Supp     b'+1:lemma:\xc2\xb5m'
+2.060929 O        b'lemma:harbor'
+2.060390 Temp     b'+1:lemma:\xc2\xb0c'
+2.022385 Supp     b'lemma:nitrate'
+1.998316 pH       b'lemma:ph5'
+1.998316 pH       b'+1:lemma:.5'
+1.988849 Air      b'-1:lemma:ChIP-Seq'
+1.977405 Med      b'lemma:m63'
+1.976213 Temp     b'lemma:\xc2\xb0c'
+1.971324 Gtype    b'lemma:dfnr'
+1.969127 O        b'+1:lemma:arca-8myc'
+1.955303 O        b'-1:lemma:0.3'
+1.951821 O        b'-2:lemma:medium'
+1.942893 Supp     b'+1:lemma:_'
+1.937510 Gtype    b'-2:lemma:affyexp'
+1.929115 Air      b'-2:lemma:IP'
+1.905706 Substrain b'+1:lemma:phtpg'
+1.898318 Supp     b'+1:lemma:2'
+1.895488 Technique b'lemma:rnaseq'
+1.881491 Supp     b'lemma:arginine'
+1.871246 Technique b'-2:lemma:Fur'
+1.871212 Med      b'+2:lemma:b2'
+1.868278 Substrain b'-2:lemma:substr'
+1.833742 Gtype    b'lemma:nsrr'
+1.826714 O        b'-1:lemma:media'
+1.824754 O        b'-1:lemma:anaerobic'
+1.808509 Supp     b'-2:lemma:agent'
+1.807657 O        b'+1:postag:RB'
+1.807328 Gtype    b'-1:lemma:rpob'
+1.803500 O        b'postag:NNS'
+1.797656 Technique b'lemma:ChIP-Seq'
+1.773838 O        b'lemma:chip'
+1.773424 Strain   b'+1:lemma:substr'
+1.773424 Strain   b'-2:lemma:str'
+1.772977 O        b'-1:lemma:glucose'
+1.769253 Anti     b'+1:lemma:antibody'
+1.768929 Gversion b'lemma:.2'
+1.768929 Gversion b'-1:lemma:u00096'
+1.753884 O        b'lemma:\xcf\x8332'
+1.753283 O        b'-2:lemma:myc'
+1.752434 Anti     b'+2:lemma:antibody'
+1.746191 Gtype    b'lemma:pk4854'
+1.745489 Technique b'-1:lemma:IP'
+1.733914 Supp     b'lemma:Leu'
+1.733914 Supp     b'-2:lemma:Lrp'
+1.720315 O        b'postag:DT'
+1.720167 Strain   b'lemma:k-12'
+1.714367 Med      b'+2:postag:CC'
+1.702196 Gtype    b'-2:lemma:delta'
+1.700861 O        b'lemma:argr'
+1.699626 O        b'+2:postag:JJ'
+1.699572 O        b'lemma:affyexp'
+1.698615 Air      b'-1:lemma:-'
+1.698323 Air      b'lemma:anaeroibc'
+1.697509 Temp     b'lemma:43'
+1.686900 Supp     b'lemma:Adenine'
+1.667205 O        b'lemma:soxs'
+1.667205 O        b'lemma:soxr'
+1.665708 Supp     b'lemma:fructose'
+1.663126 O        b'lemma:ompr'
+1.657174 O        b'lemma:purr'
+1.642276 Technique b'-1:lemma:chip-exo'
+1.640609 Gtype    b'+1:lemma:ph5'
+1.640609 Gtype    b'+2:lemma:.5'
+1.635130 Temp     b'-1:lemma:43'
+1.629117 Med      b'+1:lemma:0.4'
+1.624603 Supp     b'-1:postag:CC'
+1.623648 O        b'+1:lemma:pq'
+1.620057 Med      b'-1:lemma:in'
+1.607167 Technique b'-1:lemma:_'
+1.597588 Technique b'-2:lemma:wt'
+1.594913 Med      b'lemma:minimal'
+1.582538 Temp     b'-2:lemma:\xcf\x8332'
+1.579977 Gversion b'-2:lemma:nc'
+1.577928 O        b'-1:lemma:\xc2\xb0c'
+1.574442 O        b'+1:lemma:wt'
+1.571857 Supp     b'-1:lemma:+'
+1.571133 O        b'lemma:trpr'
+1.568931 O        b'lemma:culture'
+1.568914 O        b'lemma:genotype/variation'
+1.567478 Technique b'-1:lemma:input'
+1.560894 O        b'+1:postag:NNP'
+1.559633 O        b'-1:lemma:lb'
+1.558911 Gtype    b'lemma:\xce\xb4ompr'
+1.557164 Phase    b'+1:lemma:phase'
+1.552494 O        b'+2:lemma:cra'
+1.551712 Supp     b'-2:lemma:for'
+1.548775 Gtype    b'+2:lemma:glucose'
+1.548228 Med      b'lemma:media'
+1.546489 Supp     b'lemma:rifampicin'
+1.538993 Air      b'lemma:anaerobically'
+1.538769 Gtype    b'lemma:\xce\xb4oxyr'
+1.527888 Gversion b'lemma:u00096'
+1.527888 Gversion b'+1:lemma:.2'
+1.510740 Phase    b'lemma:exponential'
+1.510740 Phase    b'lemma:stationary'
+1.504271 O        b'+1:lemma:chip-seq'
+1.500405 Gversion b'-2:lemma:build'
+1.494395 Gtype    b'lemma:ptac'
+1.491733 O        b'-1:lemma:Aerobic'
+1.489191 Agit     b'lemma:rpm'
+1.488153 Technique b'postag:NNP'
+1.481440 pH       b'lemma:.5'
+1.481440 pH       b'-1:lemma:ph5'
+1.479765 O        b'-2:lemma:min'
+1.461483 Med      b'+2:lemma:b1'
+1.458322 O        b'lemma:-lrb-'
+1.457545 O        b'lemma:ml'
+1.456515 O        b'-1:lemma:type'
+1.455521 Phase    b'lemma:phase'
+1.454471 Temp     b'-1:lemma:\xcf\x8332'
+1.445071 Gtype    b'-2:postag:DT'
+1.444366 O        b'+1:lemma:od600'
+1.441153 Med      b'+1:lemma:minimal'
+1.435416 O        b'-1:lemma:wt'
+1.433093 O        b'+1:lemma:coli'
+1.432963 Gtype    b'+1:lemma:_'
+1.414930 Gtype    b'+1:lemma:flagtag'
+1.409771 Med      b'lemma:broth'
+1.409771 Med      b'-1:lemma:L'
+1.404102 Gtype    b'-1:postag:VBG'
+1.402997 O        b'+1:lemma:condition'
+1.385125 O        b'-2:lemma:ChIP-Seq'
+1.378975 O        b'lemma:Custom'
+1.368428 Gtype    b'-1:lemma:ptac'
+1.367249 Supp     b'-2:lemma:condition'
+1.365896 Supp     b'-1:lemma:_'
+1.360344 Gversion b'-2:postag:VB'
+1.358613 Gtype    b'lemma:arca8myc'
+1.358613 Gtype    b'-2:lemma:chip-arca'
+1.355013 O        b'lemma:s'
+1.352241 Technique b'-1:lemma:rna-seq'
+
+
+Top negative:
+-0.240864 O        b'-1:lemma:n2'
+-0.241870 Supp     b'+2:postag::'
+-0.244948 Supp     b'-1:postag:-LRB-'
+-0.245788 O        b'+1:lemma:_'
+-0.250584 O        b'+1:lemma:\xc2\xb0c'
+-0.251484 Supp     b'+1:postag:VBN'
+-0.251630 Technique b'-2:postag:NN'
+-0.255068 O        b'+1:lemma:culture'
+-0.255092 O        b'lemma:ph'
+-0.257956 OD       b'+2:postag:NN'
+-0.258052 O        b'+1:lemma:gade'
+-0.259067 Gtype    b'-2:postag:CD'
+-0.259245 O        b'lemma:250'
+-0.260012 Phase    b'+1:postag:NN'
+-0.261463 O        b'-1:lemma:sodium'
+-0.261463 O        b'+2:lemma:1/100'
+-0.261641 O        b'-1:lemma:1m'
+-0.261641 O        b'+2:lemma:7.6'
+-0.267912 Strain   b'postag:NN'
+-0.268585 O        b'-2:lemma:aerobically'
+-0.270821 O        b'lemma:0.2'
+-0.271046 O        b'-2:lemma:2'
+-0.273281 Temp     b'-1:lemma:\xc2\xb0c'
+-0.273389 O        b'+1:lemma:mg1655'
+-0.275465 Med      b'-1:postag:CD'
+-0.279720 Supp     b'+1:lemma:rifampicin'
+-0.282890 O        b'+1:postag:IN'
+-0.290800 Supp     b'+2:lemma:acetate'
+-0.293273 O        b'-2:lemma:mg1655'
+-0.294116 Anti     b'+2:postag:JJ'
+-0.299017 Supp     b'lemma:1'
+-0.301190 O        b'-1:postag:IN'
+-0.309209 Supp     b'+1:postag:-RRB-'
+-0.311352 Supp     b'+2:postag:CC'
+-0.313923 O        b'+1:postag:VBG'
+-0.315176 Supp     b'-1:lemma:dpd'
+-0.321987 O        b'+1:lemma:gadw'
+-0.325650 Med      b'-1:postag:NN'
+-0.327648 O        b'lemma:methanol'
+-0.327648 O        b'-2:lemma:dissolve'
+-0.328318 O        b'-1:lemma:0.2'
+-0.334852 O        b'lemma:fecl2'
+-0.339654 O        b'lemma:anaerobic'
+-0.341230 O        b'-1:lemma:chip-exo'
+-0.353401 O        b'-1:lemma:cra'
+-0.354424 O        b'-2:lemma:anaerobically'
+-0.355426 O        b'-2:lemma:rpob'
+-0.355678 O        b'-1:lemma:contain'
+-0.361362 O        b'+1:lemma:g/l'
+-0.361781 O        b'lemma:dissolve'
+-0.361781 O        b'+2:lemma:methanol'
+-0.366638 O        b'lemma:lb'
+-0.367583 Supp     b'+1:lemma:fructose'
+-0.369374 Med      b'+1:postag:NN'
+-0.369510 O        b'lemma:m63'
+-0.370064 O        b'-2:lemma:phase'
+-0.370439 O        b'+1:lemma:minimal'
+-0.370982 O        b'-2:lemma:pahse'
+-0.371136 Supp     b'-2:lemma:grow'
+-0.375991 Vess     b'postag:NN'
+-0.378096 O        b'+1:lemma:rep2'
+-0.378255 O        b'+2:lemma:-rrb-'
+-0.380278 O        b'+2:lemma:at'
+-0.384210 O        b'-1:lemma:minimal'
+-0.388239 O        b'-2:lemma:glucose'
+-0.391106 Air      b'-1:postag:JJ'
+-0.391908 O        b'-1:lemma:until'
+-0.392584 Supp     b'+2:lemma:-rrb-'
+-0.394595 O        b'+1:lemma:Aerobic'
+-0.396109 O        b'-1:lemma:final'
+-0.396858 Med      b'+1:postag:IN'
+-0.398638 O        b'-1:lemma:iptg'
+-0.405984 O        b'-2:lemma:mm'
+-0.412751 O        b'-1:lemma:37'
+-0.423858 O        b'+1:lemma:dissolve'
+-0.428909 O        b'-2:lemma:supplement'
+-0.431989 O        b'+1:lemma:m'
+-0.436777 Supp     b'+2:postag:-RRB-'
+-0.437255 Supp     b'-1:postag:VBN'
+-0.440236 O        b'+2:lemma:tag'
+-0.446461 Supp     b'+1:postag:NNS'
+-0.448337 O        b'lemma:nitrogen'
+-0.452881 Supp     b'postag:CC'
+-0.454287 Supp     b'+2:lemma:glucose'
+-0.459760 O        b'lemma:minimal'
+-0.470804 O        b'-2:lemma:nh4cl'
+-0.491402 O        b'postag:RB'
+-0.494015 O        b'lemma:37'
+-0.499646 O        b'-1:lemma:g/l'
+-0.502121 O        b'+2:lemma:a'
+-0.507239 Supp     b'+1:lemma:acetate'
+-0.509993 O        b'-1:lemma:dissolve'
+-0.509993 O        b'+1:lemma:methanol'
+-0.518444 Supp     b'-1:postag:NNP'
+-0.522170 O        b'-1:lemma:grow'
+-0.523412 O        b'-2:lemma:a'
+-0.531453 O        b'+1:lemma:1m'
+-0.531453 O        b'-2:lemma:vol'
+-0.534602 O        b'+2:lemma:250'
+-0.538057 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.549372 O        b'+2:lemma:then'
+-0.549638 O        b'+2:lemma:genome'
+-0.550134 Supp     b'-2:lemma:treat'
+-0.556977 O        b'-1:lemma:fresh'
+-0.558288 O        b'-1:lemma:dfnr'
+-0.565708 O        b'+1:lemma:supplement'
+-0.569022 O        b'lemma:fructose'
+-0.575610 O        b'lemma:anaerobically'
+-0.577376 O        b'-2:lemma:genome'
+-0.595858 O        b'-2:lemma:fresh'
+-0.603206 O        b'-2:postag:DT'
+-0.608051 O        b'+1:lemma:mm'
+-0.613648 O        b'lemma:glucose'
+-0.624344 O        b'lemma:k-12'
+-0.635426 Supp     b'+1:lemma:,'
+-0.635426 Supp     b'+1:postag:,'
+-0.639334 O        b'-1:lemma:mm'
+-0.646392 O        b'-1:lemma:\xe2\x88\x86'
+-0.646596 Med      b'-2:lemma:grow'
+-0.652076 O        b'-2:lemma:until'
+-0.661116 O        b'lemma:2h'
+-0.661116 O        b'-1:lemma:additional'
+-0.663482 O        b'-2:postag:RB'
+-0.673788 O        b'-2:lemma::'
+-0.674569 O        b'+2:lemma:reference'
+-0.683036 O        b'+2:lemma:add'
+-0.685189 pH       b'postag:NN'
+-0.685297 O        b'postag:VBP'
+-0.688346 Med      b'+2:postag:VBN'
+-0.688555 Supp     b'+1:lemma:-lrb-'
+-0.690175 Supp     b'-2:postag:JJ'
+-0.690245 Phase    b'postag:JJ'
+-0.697689 O        b'+2:lemma:10'
+-0.703863 Supp     b'+1:postag:-LRB-'
+-0.708967 Anti     b'+1:lemma:anti-fur'
+-0.728829 O        b'+1:lemma:until'
+-0.747693 O        b'-1:lemma:ml'
+-0.751276 O        b'-2:lemma:dpd'
+-0.756088 O        b'lemma:aerobically'
+-0.760131 O        b'-1:lemma:30'
+-0.766561 O        b'lemma:\xe2\x88\x86'
+-0.771321 O        b'-2:postag:SYM'
+-0.778341 O        b'-1:lemma:2'
+-0.802560 O        b'lemma:of'
+-0.802884 Med      b'-2:postag:VBN'
+-0.806377 O        b'-1:postag::'
+-0.826105 O        b'+2:lemma:mid-log'
+-0.849054 O        b'-2:lemma:media'
+-0.867470 O        b'-1:lemma:vol'
+-0.867470 O        b'-2:lemma:1/100'
+-0.867470 O        b'+2:lemma:1m'
+-0.867875 Phase    b'-1:postag:JJ'
+-0.884642 O        b'lemma:nh4cl'
+-0.898025 O        b'+2:postag:-RRB-'
+-0.915346 Temp     b'postag:NN'
+-0.917405 O        b'+2:lemma:+'
+-0.919858 O        b'-1:lemma:1'
+-0.926225 O        b'-1:lemma:rpob'
+-0.927298 O        b'-2:lemma:IP'
+-0.934298 O        b'lemma:mid-log'
+-0.947126 O        b'-1:lemma:co2'
+-0.947829 Air      b'+1:postag:JJ'
+-0.976905 O        b'+2:lemma:fnr'
+-0.983443 Anti     b'+2:lemma:polyclonal'
+-0.983730 O        b'lemma:nitrate'
+-0.994076 Supp     b'+2:lemma:fructose'
+-0.999100 Air      b'postag:NN'
+-0.999246 O        b'-1:lemma:ph'
+-1.004751 OD       b'+1:postag:NN'
+-1.006120 O        b'+1:lemma:+'
+-1.012830 O        b'-2:lemma:0.3'
+-1.019854 O        b'+2:lemma:b'
+-1.020397 O        b'+1:lemma:2.0'
+-1.043510 O        b'-1:lemma:sample'
+-1.049774 OD       b'+2:lemma:aerobically'
+-1.060960 O        b'lemma:30'
+-1.076454 O        b'lemma:rifampicin'
+-1.098762 Supp     b'+2:postag:CD'
+-1.112282 O        b'lemma:aerobic'
+-1.121896 Gtype    b'+2:lemma:cra'
+-1.139537 Supp     b'+2:lemma:2'
+-1.152551 Supp     b'+2:lemma:1'
+-1.156894 O        b'lemma:media'
+-1.166267 O        b'+1:lemma:at'
+-1.166551 O        b'-1:lemma:nsrr'
+-1.176235 O        b'+1:lemma:in'
+-1.183711 O        b'+2:lemma:rifampicin'
+-1.212779 O        b'lemma:wt'
+-1.245458 O        b'-2:lemma:rifampicin'
+-1.334770 O        b'lemma:\xce\xb4fur'
+-1.335529 O        b'-1:lemma:IP'
+-1.335617 Anti     b'postag:NNP'
+-1.392108 O        b'lemma:0.3'
+-1.428060 Gtype    b'postag:VBG'
+-1.462629 O        b'-1:postag:VBG'
+-1.559454 Supp     b'postag:JJ'
+-1.728116 O        b'+1:lemma:1'
+-2.237261 O        b'+1:lemma:2'
+-2.735096 O        b'-1:lemma::'
+-3.093805 O        b'-1:lemma:_'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.14456252410554848, 'c2': 0.011570925278244349}
+best CV score:0.8716328545433987
+model size: 0.08M
+
+Flat F1: 0.7636412886634287
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.870     0.930        23
+        Med      1.000     0.925     0.961        53
+       Temp      0.923     0.828     0.873        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.545     0.348     0.425        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.867     0.847     0.857        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.588     0.799     0.677       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.772     0.774     0.764       451
+
+
+Top likely transitions:
+Temp   -> Temp    6.024803
+Agit   -> Agit    5.753028
+Supp   -> Supp    5.295546
+Med    -> Med     5.289039
+OD     -> OD      5.264385
+Anti   -> Anti    4.686479
+Phase  -> Phase   4.417910
+Gversion -> Gversion 4.395019
+Gtype  -> Gtype   4.186766
+Air    -> Air     4.136213
+O      -> O       3.983716
+Technique -> Technique 3.660895
+pH     -> pH      2.993749
+Substrain -> Gtype   1.904754
+Gtype  -> Supp    1.311934
+O      -> Supp    1.064130
+Air    -> O       1.010529
+O      -> Technique 0.929538
+O      -> Gtype   0.674914
+Gtype  -> Air     0.657462
+Technique -> Air     0.573565
+Supp   -> O       0.528829
+Temp   -> O       0.495755
+Med    -> O       0.454783
+O      -> Temp    0.096626
+Phase  -> O       0.074667
+O      -> Phase   0.052955
+O      -> Med     0.050244
+Gtype  -> pH      0.043509
+O      -> Anti    0.028320
+Gtype  -> Technique -0.027765
+Agit   -> O       -0.075594
+Technique -> O       -0.250844
+Gtype  -> Med     -0.292682
+Supp   -> Med     -0.310233
+OD     -> Air     -0.365882
+O      -> Air     -0.729567
+Phase  -> OD      -0.765060
+Gtype  -> O       -0.784406
+Technique -> Gtype   -1.361493
+Substrain -> O       -1.377371
+Med    -> Supp    -1.830126
+
+
+Top unlikely transitions:
+Temp   -> Temp    6.024803
+Agit   -> Agit    5.753028
+Supp   -> Supp    5.295546
+Med    -> Med     5.289039
+OD     -> OD      5.264385
+Anti   -> Anti    4.686479
+Phase  -> Phase   4.417910
+Gversion -> Gversion 4.395019
+Gtype  -> Gtype   4.186766
+Air    -> Air     4.136213
+O      -> O       3.983716
+Technique -> Technique 3.660895
+pH     -> pH      2.993749
+Substrain -> Gtype   1.904754
+Gtype  -> Supp    1.311934
+O      -> Supp    1.064130
+Air    -> O       1.010529
+O      -> Technique 0.929538
+O      -> Gtype   0.674914
+Gtype  -> Air     0.657462
+Technique -> Air     0.573565
+Supp   -> O       0.528829
+Temp   -> O       0.495755
+Med    -> O       0.454783
+O      -> Temp    0.096626
+Phase  -> O       0.074667
+O      -> Phase   0.052955
+O      -> Med     0.050244
+Gtype  -> pH      0.043509
+O      -> Anti    0.028320
+Gtype  -> Technique -0.027765
+Agit   -> O       -0.075594
+Technique -> O       -0.250844
+Gtype  -> Med     -0.292682
+Supp   -> Med     -0.310233
+OD     -> Air     -0.365882
+O      -> Air     -0.729567
+Phase  -> OD      -0.765060
+Gtype  -> O       -0.784406
+Technique -> Gtype   -1.361493
+Substrain -> O       -1.377371
+Med    -> Supp    -1.830126
+
+
+Top positive:
+6.812438 O        b'lemma:2'
+6.703250 Phase    b'lemma:mid-log'
+6.559342 O        b'lemma:1'
+6.133494 Anti     b'-2:lemma:antibody'
+5.903347 Air      b'lemma:anaerobic'
+5.834979 O        b'-2:lemma:_'
+5.776253 Air      b'lemma:Aerobic'
+5.551637 Gtype    b'lemma:wt'
+5.548591 Gtype    b'lemma:type'
+5.516753 O        b'lemma:3'
+5.468775 O        b'-2:lemma:flagtag'
+5.270765 Supp     b'lemma:pq'
+5.224920 Technique b'lemma:chipseq'
+5.217760 O        b'lemma:_'
+5.150603 Technique b'lemma:ChIP-exo'
+4.842010 O        b'-1:lemma:ChIP-exo'
+4.788720 Air      b'lemma:aerobic'
+4.755345 Gtype    b'lemma:\xce\xb4cra'
+4.651993 Med      b'lemma:MOPS'
+4.537114 Gtype    b'lemma:\xe2\x88\x86'
+4.464327 Gtype    b'lemma:wild-type'
+4.427065 O        b'postag:IN'
+4.254029 Supp     b'lemma:no3'
+4.245214 Gtype    b'lemma:flag-tag'
+4.245214 Gtype    b'-1:lemma:c-terminal'
+4.223016 O        b'lemma:b'
+4.196865 Technique b'lemma:rna-seq'
+4.184006 Gtype    b'+1:lemma:type'
+4.176776 O        b'lemma:-'
+4.152973 Phase    b'-2:lemma:phase'
+4.056463 Gtype    b'-2:lemma:genotype/variation'
+3.986855 Supp     b'lemma:Iron'
+3.986855 Supp     b'-2:lemma:Anaerobic'
+3.973602 O        b'lemma:rpob'
+3.966116 Supp     b'lemma:acetate'
+3.938991 O        b'lemma:.'
+3.938991 O        b'postag:.'
+3.894365 Supp     b'lemma:nacl'
+3.881738 Gtype    b'lemma:\xce\xb4fur'
+3.877245 Gtype    b'-1:lemma:\xe2\x88\x86'
+3.815337 Technique b'lemma:chip-seq'
+3.743495 O        b'lemma:with'
+3.732573 Supp     b'lemma:nh4cl'
+3.716505 Air      b'postag:RB'
+3.640623 O        b'+2:lemma:\xc2\xb0c'
+3.608559 Med      b'lemma:lb'
+3.571656 O        b'postag:VBN'
+3.549390 O        b'postag:CC'
+3.503089 O        b'-2:lemma:medium'
+3.502227 Gtype    b'lemma:dfnr'
+3.494672 O        b'lemma:a'
+3.490805 Supp     b'-1:lemma:Cra'
+3.447774 Supp     b'lemma:nitrate'
+3.423108 O        b'lemma:Cra'
+3.418016 Gtype    b'lemma:\xce\xb4soxr'
+3.395324 Gtype    b'-2:lemma:genotype'
+3.386697 Supp     b'lemma:glucose'
+3.344372 Technique b'+2:lemma:ph5'
+3.251866 Supp     b'-1:lemma:with'
+3.249713 O        b'postag::'
+3.200140 Gtype    b'-2:lemma:affyexp'
+3.182935 Supp     b'lemma:arginine'
+3.180726 Gversion b'lemma:chip-seq'
+3.161435 Technique b'lemma:rnaseq'
+3.148795 Supp     b'+2:lemma:iptg'
+3.067497 Substrain b'lemma:mg1655'
+3.056568 O        b'lemma:CEL'
+3.013304 Med      b'lemma:m63'
+3.005306 Gtype    b'-2:lemma:delta'
+3.005008 O        b'lemma:harbor'
+3.001202 Air      b'-1:lemma:ChIP-Seq'
+2.966077 O        b'-1:lemma:\xc2\xb0c'
+2.927961 Gtype    b'lemma:nsrr'
+2.909022 Gtype    b'lemma:pk4854'
+2.878177 Air      b'-2:lemma:IP'
+2.876549 Technique b'lemma:ChIP-Seq'
+2.870544 O        b'+1:lemma:arca-8myc'
+2.865302 O        b'-2:lemma:myc'
+2.847767 Technique b'-2:lemma:Fur'
+2.847429 Gtype    b'+1:lemma:with'
+2.829243 O        b'-1:lemma:0.3'
+2.778649 O        b'lemma:rep2'
+2.776931 Technique b'-1:lemma:IP'
+2.773491 Supp     b'+1:lemma:\xc2\xb5m'
+2.763337 O        b'postag:DT'
+2.746233 Supp     b'+1:lemma:1'
+2.744343 Anti     b'+2:lemma:antibody'
+2.730395 O        b'lemma:chip'
+2.728846 O        b'-1:lemma:tag'
+2.664541 O        b'-1:lemma:media'
+2.622991 Supp     b'lemma:rifampicin'
+2.586777 Temp     b'-1:lemma:\xcf\x8332'
+2.573215 Gtype    b'+1:lemma:ph5'
+2.573215 Gtype    b'+2:lemma:.5'
+2.566604 O        b'-1:lemma:lb'
+2.552670 Temp     b'-2:lemma:\xcf\x8332'
+2.541452 O        b'-1:lemma:type'
+2.526524 pH       b'+1:postag:CD'
+2.516979 O        b'-1:lemma:glucose'
+2.501080 Technique b'-1:lemma:chip-exo'
+2.497698 Gtype    b'lemma:\xce\xb4ompr'
+2.495468 Substrain b'-2:lemma:substr'
+2.481730 O        b'postag:VBG'
+2.475769 Med      b'+2:lemma:b2'
+2.463569 Gtype    b'lemma:\xce\xb4oxyr'
+2.457060 O        b'+1:postag:RB'
+2.438239 Temp     b'lemma:43'
+2.435108 Supp     b'lemma:Leu'
+2.435108 Supp     b'-2:lemma:Lrp'
+2.434323 O        b'-2:lemma:min'
+2.423093 Supp     b'-2:lemma:agent'
+2.399905 O        b'+1:postag:NNP'
+2.392843 Anti     b'+1:lemma:antibody'
+2.387723 Supp     b'-1:lemma:+'
+2.375278 O        b'lemma:ompr'
+2.375177 O        b'lemma:ml'
+2.351025 O        b'+2:lemma:cra'
+2.328145 Supp     b'-2:lemma:media'
+2.315613 pH       b'lemma:ph5'
+2.315613 pH       b'+1:lemma:.5'
+2.295509 Phase    b'lemma:exponential'
+2.295509 Phase    b'lemma:stationary'
+2.282923 Strain   b'+1:lemma:substr'
+2.282923 Strain   b'-2:lemma:str'
+2.282875 Gversion b'lemma:.2'
+2.282875 Gversion b'-1:lemma:u00096'
+2.271205 Supp     b'+1:lemma:2'
+2.268299 Air      b'lemma:anaeroibc'
+2.262222 Air      b'-1:lemma:-'
+2.253598 O        b'lemma:s'
+2.235400 Temp     b'-1:lemma:43'
+2.227662 Phase    b'lemma:phase'
+2.215669 Phase    b'-1:lemma:mid-log'
+2.203744 Med      b'+2:postag:CC'
+2.189036 Substrain b'+1:lemma:phtpg'
+2.178331 Gtype    b'-1:lemma:rpob'
+2.173660 Strain   b'lemma:k-12'
+2.160417 Gtype    b'-1:postag:VBG'
+2.141054 Agit     b'+2:lemma:at'
+2.140046 Med      b'lemma:broth'
+2.140046 Med      b'-1:lemma:L'
+2.132754 Temp     b'+1:lemma:\xc2\xb0c'
+2.122883 O        b'lemma:soxs'
+2.122883 O        b'lemma:soxr'
+2.115213 O        b'postag:VBD'
+2.111512 O        b'lemma:\xcf\x8332'
+2.083781 Agit     b'lemma:rpm'
+2.051564 O        b'lemma:culture'
+2.049120 O        b'+1:lemma:condition'
+2.041245 Gversion b'lemma:nc'
+2.038470 O        b'+1:lemma:250'
+2.033120 O        b'lemma:Custom'
+2.025823 O        b'postag:NNS'
+2.016924 O        b'+2:lemma:70'
+2.010539 O        b'+2:postag:JJ'
+2.006555 O        b'-1:lemma:aerobically'
+1.996814 O        b'-2:lemma:~'
+1.984709 O        b'+2:lemma:polyclonal'
+1.976905 Supp     b'lemma:Adenine'
+1.976120 Technique b'-1:lemma:input'
+1.964721 Air      b'lemma:aerobically'
+1.957500 Gversion b'lemma:u00096'
+1.957500 Gversion b'+1:lemma:.2'
+1.944301 O        b'+1:lemma:chip-seq'
+1.944163 Temp     b'-1:lemma:sample'
+1.935179 O        b'lemma:trpr'
+1.934476 O        b'+1:lemma:coli'
+1.932800 Supp     b'lemma:fructose'
+1.929974 Med      b'lemma:media'
+1.923950 O        b'-1:lemma:anaerobic'
+1.922151 Gversion b'+2:lemma:000913'
+1.917131 Temp     b'lemma:\xc2\xb0c'
+1.887292 OD       b'lemma:od450'
+1.883152 Agit     b'+1:lemma:rpm'
+1.879063 Gtype    b'lemma:ptac'
+1.875710 O        b'+1:lemma:pq'
+1.873042 O        b'+2:lemma:fructose'
+1.856178 Supp     b'+1:lemma:_'
+1.855822 Gtype    b'-1:lemma:ptac'
+1.853574 Supp     b'+2:lemma:rifampicin'
+1.850128 Med      b'+2:lemma:b1'
+1.848750 O        b'-1:lemma:into'
+1.826684 Gversion b'-2:lemma:nc'
+1.820054 Supp     b'+2:lemma:feso4'
+1.808700 Supp     b'-2:lemma:condition'
+1.799712 O        b'-1:lemma:Aerobic'
+1.787048 Med      b'+1:lemma:0.4'
+1.768038 O        b'lemma:argr'
+1.752493 Supp     b'-2:lemma:induce'
+1.749745 O        b'+1:lemma:acetate'
+1.744647 O        b'+1:lemma:od600'
+1.730393 O        b'lemma:genotype/variation'
+1.700932 Gtype    b'-2:postag:DT'
+1.688694 Gtype    b'+1:lemma:flagtag'
+1.685861 Gversion b'-2:lemma:build'
+1.683071 Supp     b'-2:lemma:purr'
+1.676299 Gversion b'lemma:asm584v2'
+1.648539 Technique b'-1:lemma:rna-seq'
+1.647830 Air      b'+2:lemma:L'
+1.643928 Med      b'-1:lemma:in'
+
+
+Top negative:
+-0.078150 O        b'-2:lemma:0.1'
+-0.081643 O        b'lemma:methanol'
+-0.081643 O        b'-2:lemma:dissolve'
+-0.082341 Supp     b'-2:postag:-LRB-'
+-0.086140 Supp     b'-1:lemma:dpd'
+-0.088476 Air      b'-1:lemma:or'
+-0.088979 Supp     b'+2:postag:NN'
+-0.089036 Supp     b'+2:postag:NNP'
+-0.089839 O        b'+1:lemma:ph'
+-0.091080 O        b'-1:lemma:0.2'
+-0.092461 Technique b'-1:postag::'
+-0.092726 Agit     b'postag:NN'
+-0.097852 Med      b'-1:postag:IN'
+-0.100389 Supp     b'+2:lemma:.'
+-0.100389 Supp     b'+2:postag:.'
+-0.100772 Strain   b'postag:NN'
+-0.101155 O        b'lemma:\xe2\x88\x86'
+-0.101175 O        b'+2:lemma:supplement'
+-0.103582 O        b'+1:lemma:of'
+-0.104478 O        b'-1:lemma:37'
+-0.104623 Technique b'-2:postag:NN'
+-0.106509 O        b'-1:lemma:iptg'
+-0.106780 O        b'+2:lemma:ph'
+-0.107862 Air      b'-2:postag:CC'
+-0.109728 O        b'+1:lemma:.'
+-0.109728 O        b'+1:postag:.'
+-0.113993 Supp     b'-1:lemma:10'
+-0.114214 O        b'lemma:7.6'
+-0.114214 O        b'+1:lemma:;'
+-0.115982 Agit     b'-1:postag:NN'
+-0.119361 O        b'-1:lemma:until'
+-0.124272 Gtype    b'-2:postag:CD'
+-0.129779 O        b'lemma:;'
+-0.129779 O        b'-1:lemma:7.6'
+-0.136518 O        b'+1:postag:-LRB-'
+-0.139593 O        b'-1:lemma:of'
+-0.140386 O        b'+1:lemma:a'
+-0.142883 O        b'+1:lemma:95'
+-0.143055 O        b'-2:lemma:pahse'
+-0.149480 O        b'-2:lemma:the'
+-0.150711 O        b'-1:lemma:contain'
+-0.151497 Temp     b'-2:postag:NN'
+-0.151937 O        b'-2:postag::'
+-0.153171 O        b'+2:lemma:-rrb-'
+-0.153549 Supp     b'postag:CC'
+-0.158194 O        b'+1:lemma:fecl2'
+-0.160887 Supp     b'+1:lemma:-rrb-'
+-0.161707 Supp     b'+2:lemma:dpd'
+-0.166764 O        b'-2:lemma:phase'
+-0.171348 Supp     b'+1:lemma:acetate'
+-0.171861 O        b'-1:lemma:sodium'
+-0.171861 O        b'+2:lemma:1/100'
+-0.178092 Supp     b'-1:lemma:-lrb-'
+-0.181338 O        b'lemma:dissolve'
+-0.181338 O        b'+2:lemma:methanol'
+-0.187811 Supp     b'+2:lemma:glucose'
+-0.194739 O        b'-1:lemma:1m'
+-0.194739 O        b'+2:lemma:7.6'
+-0.197753 Supp     b'-1:postag:-LRB-'
+-0.199612 Med      b'-1:postag:NN'
+-0.202024 O        b'-1:lemma:n2'
+-0.203121 Med      b'+1:postag:IN'
+-0.207404 O        b'lemma:ph'
+-0.210173 O        b'-2:lemma:aerobically'
+-0.225375 O        b'-1:lemma:cra'
+-0.226782 O        b'+2:lemma:reference'
+-0.229562 O        b'-2:lemma:genome'
+-0.233367 O        b'-2:lemma:dpd'
+-0.239153 Supp     b'+1:postag:VBN'
+-0.249635 O        b'-1:postag:IN'
+-0.252658 Med      b'postag:CD'
+-0.254030 Med      b'+1:postag:NN'
+-0.256499 O        b'lemma:fecl2'
+-0.259528 Supp     b'-2:postag:NNS'
+-0.262022 O        b'-1:lemma:ml'
+-0.263583 Air      b'+2:postag:IN'
+-0.268766 O        b'-2:lemma:mm'
+-0.270868 O        b'+1:postag:IN'
+-0.271998 O        b'+2:lemma:250'
+-0.273382 O        b'+1:lemma:%'
+-0.280464 Supp     b'+1:postag:-RRB-'
+-0.288772 O        b'+2:lemma:.'
+-0.288772 O        b'+2:postag:.'
+-0.293729 Gtype    b'-1:postag:NN'
+-0.294905 Med      b'-1:postag:CD'
+-0.308324 Phase    b'-2:postag:NN'
+-0.328837 O        b'-2:lemma:anaerobically'
+-0.334523 O        b'lemma:37'
+-0.338413 O        b'-1:lemma:fresh'
+-0.346729 O        b'-2:lemma:rpob'
+-0.351198 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.355232 Supp     b'+2:lemma:-rrb-'
+-0.356631 O        b'lemma:mid-log'
+-0.357653 O        b'-1:lemma:minimal'
+-0.359546 O        b'+1:lemma:+'
+-0.363243 O        b'+1:lemma:minimal'
+-0.365382 O        b'-2:lemma:until'
+-0.385235 O        b'+2:lemma:at'
+-0.389156 Anti     b'+2:postag:JJ'
+-0.391480 O        b'+1:lemma:g/l'
+-0.399222 Supp     b'+2:postag:-RRB-'
+-0.412306 O        b'lemma:minimal'
+-0.429953 O        b'+1:lemma:1m'
+-0.429953 O        b'-2:lemma:vol'
+-0.431351 O        b'lemma:nitrate'
+-0.432398 O        b'-2:lemma:media'
+-0.449447 Supp     b'+1:lemma:rifampicin'
+-0.451303 O        b'-2:lemma:fresh'
+-0.457431 O        b'+1:lemma:supplement'
+-0.461836 Supp     b'-1:postag:NNP'
+-0.463561 O        b'+1:postag:VBG'
+-0.472320 Anti     b'+1:lemma:anti-fur'
+-0.484075 O        b'lemma:aerobically'
+-0.484194 O        b'-1:postag::'
+-0.498931 Supp     b'+1:postag:NNS'
+-0.503746 Supp     b'+1:lemma:,'
+-0.503746 Supp     b'+1:postag:,'
+-0.516754 Supp     b'-2:lemma:treat'
+-0.528514 O        b'+2:lemma:add'
+-0.529405 O        b'-2:lemma:glucose'
+-0.533457 O        b'+1:lemma:mm'
+-0.546157 Supp     b'lemma:10'
+-0.565127 Supp     b'+1:lemma:-lrb-'
+-0.566088 Med      b'-2:postag:VBN'
+-0.566661 O        b'-1:lemma:dissolve'
+-0.566661 O        b'+1:lemma:methanol'
+-0.570423 O        b'lemma:wt'
+-0.580351 O        b'-2:lemma:supplement'
+-0.586279 Phase    b'+1:postag:NN'
+-0.593248 Supp     b'+1:postag:-LRB-'
+-0.597210 O        b'-1:lemma:grow'
+-0.598482 O        b'-1:lemma:co2'
+-0.601257 O        b'lemma:anaerobically'
+-0.603375 O        b'-2:lemma::'
+-0.604605 O        b'+2:lemma:10'
+-0.608424 Med      b'+2:postag:VBN'
+-0.640686 O        b'-1:lemma:rpob'
+-0.648211 O        b'-1:lemma:mm'
+-0.677339 O        b'+2:lemma:a'
+-0.691258 pH       b'postag:NN'
+-0.714470 O        b'-2:postag:SYM'
+-0.753388 O        b'-2:postag:RB'
+-0.759391 O        b'-1:lemma:vol'
+-0.759391 O        b'-2:lemma:1/100'
+-0.759391 O        b'+2:lemma:1m'
+-0.777706 O        b'+2:lemma:fnr'
+-0.785687 O        b'lemma:aerobic'
+-0.789592 Air      b'+1:postag:JJ'
+-0.815302 O        b'postag:VBP'
+-0.841098 O        b'lemma:2h'
+-0.841098 O        b'-1:lemma:additional'
+-0.842931 O        b'+2:lemma:mid-log'
+-0.851282 O        b'+2:lemma:then'
+-0.861129 O        b'+1:lemma:until'
+-0.862940 Supp     b'-2:postag:JJ'
+-0.870874 O        b'+2:postag:-RRB-'
+-0.875415 O        b'-2:lemma:2'
+-0.885220 O        b'lemma:of'
+-0.896666 O        b'-1:lemma:30'
+-0.902553 Air      b'postag:NN'
+-0.931783 O        b'+2:lemma:+'
+-0.932080 O        b'-2:postag:DT'
+-1.044263 O        b'+2:lemma:b'
+-1.102463 O        b'lemma:rifampicin'
+-1.119605 O        b'lemma:\xce\xb4fur'
+-1.163234 O        b'lemma:media'
+-1.202846 O        b'-1:lemma:ph'
+-1.209159 O        b'-1:lemma:nsrr'
+-1.238185 O        b'-1:lemma:2'
+-1.242160 O        b'+1:lemma:at'
+-1.252527 Temp     b'postag:NN'
+-1.263981 Med      b'-2:lemma:grow'
+-1.295021 O        b'-2:lemma:0.3'
+-1.322790 Phase    b'-1:postag:JJ'
+-1.350768 O        b'-1:lemma:IP'
+-1.357106 Gtype    b'+2:lemma:cra'
+-1.384802 O        b'+1:lemma:in'
+-1.421905 O        b'+1:lemma:2.0'
+-1.436909 OD       b'+1:postag:NN'
+-1.437140 Anti     b'+2:lemma:polyclonal'
+-1.442674 Supp     b'+2:lemma:2'
+-1.474029 O        b'-1:postag:VBG'
+-1.510725 O        b'-1:lemma:1'
+-1.511208 O        b'+2:lemma:rifampicin'
+-1.539773 Supp     b'+2:lemma:1'
+-1.576652 O        b'-1:lemma:sample'
+-1.596285 Supp     b'+2:postag:CD'
+-1.602706 Supp     b'+2:lemma:fructose'
+-1.609888 OD       b'+2:lemma:aerobically'
+-1.653266 O        b'-2:lemma:rifampicin'
+-1.693828 O        b'lemma:30'
+-1.745628 Supp     b'postag:JJ'
+-1.754845 Phase    b'postag:JJ'
+-2.081244 Gtype    b'postag:VBG'
+-2.085569 O        b'lemma:0.3'
+-2.233412 O        b'+1:lemma:1'
+-2.309269 Anti     b'postag:NNP'
+-2.656990 O        b'+1:lemma:2'
+-3.924521 O        b'-1:lemma::'
+-4.650524 O        b'-1:lemma:_'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.044162082189650204, 'c2': 0.029804343353737328}
+best CV score:0.8706581096952577
+model size: 0.14M
+
+Flat F1: 0.7969827918323339
+             precision    recall  f1-score   support
+
+         OD      0.818     0.818     0.818        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     1.000     1.000        23
+        Med      1.000     0.962     0.981        53
+       Temp      0.923     0.828     0.873        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.875     0.824     0.848        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.752     0.813     0.781       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.815     0.787     0.797       451
+
+
+Top likely transitions:
+Supp   -> Supp    5.670083
+Temp   -> Temp    5.254231
+Agit   -> Agit    5.011354
+Med    -> Med     4.713332
+OD     -> OD      4.391989
+Anti   -> Anti    4.030410
+O      -> O       3.948161
+Gtype  -> Gtype   3.922534
+Phase  -> Phase   3.864108
+Gversion -> Gversion 3.673104
+Air    -> Air     3.570167
+Technique -> Technique 3.152316
+pH     -> pH      2.370151
+Substrain -> Gtype   1.132148
+O      -> Technique 0.880743
+Air    -> O       0.699229
+Supp   -> O       0.507469
+O      -> Supp    0.436503
+Gtype  -> Supp    0.431300
+Technique -> Air     0.416894
+Gtype  -> Air     0.341610
+Temp   -> O       0.264669
+O      -> Gtype   0.262204
+O      -> Temp    0.066407
+Med    -> O       0.014255
+pH     -> O       0.001942
+OD     -> Technique -0.000000
+Supp   -> Air     -0.000026
+Supp   -> Gversion -0.000029
+Med    -> Air     -0.000244
+O      -> Anti    -0.000275
+Gversion -> Technique -0.000419
+Air    -> Technique -0.005983
+Gversion -> Gtype   -0.043836
+Supp   -> Phase   -0.058360
+Technique -> Supp    -0.061859
+Gtype  -> Substrain -0.064135
+Phase  -> O       -0.078917
+Phase  -> Air     -0.082322
+Gtype  -> Temp    -0.084430
+OD     -> O       -0.091084
+Phase  -> Med     -0.098419
+O      -> Phase   -0.106844
+Anti   -> Supp    -0.110681
+Gtype  -> OD      -0.111764
+OD     -> Supp    -0.112906
+O      -> Gversion -0.170423
+Gversion -> Supp    -0.175049
+Air    -> Phase   -0.184406
+Supp   -> Gtype   -0.187183
+
+
+Top unlikely transitions:
+O      -> Anti    -0.000275
+Gversion -> Technique -0.000419
+Air    -> Technique -0.005983
+Gversion -> Gtype   -0.043836
+Supp   -> Phase   -0.058360
+Technique -> Supp    -0.061859
+Gtype  -> Substrain -0.064135
+Phase  -> O       -0.078917
+Phase  -> Air     -0.082322
+Gtype  -> Temp    -0.084430
+OD     -> O       -0.091084
+Phase  -> Med     -0.098419
+O      -> Phase   -0.106844
+Anti   -> Supp    -0.110681
+Gtype  -> OD      -0.111764
+OD     -> Supp    -0.112906
+O      -> Gversion -0.170423
+Gversion -> Supp    -0.175049
+Air    -> Phase   -0.184406
+Supp   -> Gtype   -0.187183
+Technique -> OD      -0.190052
+Gtype  -> Gversion -0.198104
+Phase  -> Technique -0.204487
+Phase  -> Supp    -0.209738
+Gtype  -> Phase   -0.221329
+Phase  -> OD      -0.244051
+Anti   -> Gtype   -0.311771
+Air    -> Med     -0.321626
+Air    -> Gtype   -0.339099
+Air    -> Temp    -0.358085
+Air    -> Agit    -0.378119
+Gtype  -> Anti    -0.413121
+O      -> Med     -0.423939
+Agit   -> Air     -0.427878
+Technique -> pH      -0.452260
+Technique -> Gtype   -0.453250
+Gversion -> O       -0.456685
+Supp   -> Technique -0.471510
+Temp   -> Med     -0.480258
+OD     -> Air     -0.496263
+Air    -> Supp    -0.503893
+Technique -> O       -0.618334
+O      -> OD      -0.660464
+Gtype  -> Med     -0.752077
+Gtype  -> Technique -0.755956
+Gtype  -> O       -0.808067
+Supp   -> Med     -0.862326
+Substrain -> O       -1.074379
+O      -> Air     -1.358505
+Med    -> Supp    -1.446843
+
+
+Top positive:
+4.573871 O        b'lemma:2'
+4.517132 Anti     b'-2:lemma:antibody'
+3.918900 O        b'lemma:1'
+3.762153 O        b'-2:lemma:_'
+3.676989 Air      b'word[:2]:Ae'
+3.513121 Technique b'word[:2]:Ch'
+3.487470 O        b'word[:2]:re'
+3.453615 O        b'lemma:3'
+3.410530 Gtype    b'word[:1]:\xce\x94'
+3.253388 Phase    b'-2:lemma:phase'
+3.161045 Supp     b'lemma:acetate'
+3.107117 O        b'lemma:with'
+3.044380 O        b'lemma:_'
+3.044380 O        b'word[:1]:_'
+2.983175 OD       b'word[:1]:O'
+2.941437 Supp     b'-1:lemma:with'
+2.930652 Gtype    b'-1:lemma:\xe2\x88\x86'
+2.920959 Phase    b'lemma:mid-log'
+2.889906 Air      b'lemma:anaerobic'
+2.870929 O        b'lemma:a'
+2.822057 Air      b'word[:2]:An'
+2.820469 Supp     b'lemma:arginine'
+2.801859 Air      b'word[:1]:A'
+2.780610 Supp     b'-1:lemma:Cra'
+2.651063 O        b'lemma:-'
+2.650338 Supp     b'-1:lemma:final'
+2.629666 O        b'-2:lemma:myc'
+2.548913 O        b'-1:lemma:tag'
+2.540238 Supp     b'+2:lemma:iptg'
+2.444337 Supp     b'word[:1]:I'
+2.424276 O        b'-2:lemma:medium'
+2.416308 O        b'+2:lemma:\xc2\xb0c'
+2.367304 Technique b'word[:2]:RN'
+2.366428 Supp     b'-1:postag:CC'
+2.323976 Supp     b'+1:lemma:1'
+2.323481 Anti     b'+1:lemma:antibody'
+2.296032 O        b'lemma:.'
+2.296032 O        b'postag:.'
+2.296032 O        b'postag[:1]:.'
+2.293419 Gtype    b'-2:lemma:genotype/variation'
+2.263949 Substrain b'word[:2]:MG'
+2.253514 Anti     b'+2:lemma:antibody'
+2.234802 Supp     b'lemma:Iron'
+2.234802 Supp     b'word[:2]:Ir'
+2.234802 Supp     b'-2:lemma:Anaerobic'
+2.224903 Supp     b'lemma:pq'
+2.224903 Supp     b'word[:2]:PQ'
+2.221321 Gtype    b'lemma:type'
+2.221321 Gtype    b'word[:2]:ty'
+2.211713 Supp     b'+1:lemma:\xc2\xb5m'
+2.185949 O        b'-1:lemma:glucose'
+2.178554 Gtype    b'word[:2]:Fl'
+2.176096 Gtype    b'hGreek'
+2.169798 O        b'+1:postag:RB'
+2.145528 O        b'-1:lemma:0.3'
+2.123487 Gtype    b'lemma:wt'
+2.107697 Supp     b'-1:lemma:_'
+2.097155 O        b'word[:2]:Cr'
+2.082178 Supp     b'lemma:nacl'
+2.060364 Med      b'lemma:MOPS'
+2.060364 Med      b'word[:2]:MO'
+2.053231 Med      b'+2:postag:CC'
+2.051275 Supp     b'word[:2]:ni'
+2.042917 pH       b'word[:2]:pH'
+2.031673 O        b'word[:2]:ge'
+2.021947 Substrain b'word[:1]:M'
+2.011615 O        b'lemma:argr'
+2.001860 O        b'-2:lemma:fructose'
+1.996958 O        b'lemma:purr'
+1.986551 O        b'+1:lemma:pq'
+1.984749 O        b'word[:1]:B'
+1.982332 Technique b'word[:1]:R'
+1.981990 Phase    b'lemma:stationary'
+1.934014 O        b'word[:2]:Rp'
+1.932482 O        b'-1:lemma:anaerobic'
+1.924219 Gtype    b'lemma:\xe2\x88\x86'
+1.924219 Gtype    b'word[:1]:\xe2\x88\x86'
+1.895338 Supp     b'+1:lemma:2'
+1.878701 Gtype    b'word[:1]:W'
+1.876510 O        b'word[:1]:G'
+1.858152 Gtype    b'-2:postag:DT'
+1.836059 O        b'+2:lemma:cra'
+1.828873 O        b'word[:2]:Pu'
+1.827035 OD       b'word[:2]:OD'
+1.822540 O        b'word[:1]:S'
+1.806311 O        b'postag::'
+1.806311 O        b'postag[:1]::'
+1.800600 pH       b'+1:postag:CD'
+1.791696 O        b'word[:1]:c'
+1.789516 O        b'-2:lemma:ChIP-Seq'
+1.783076 O        b'+2:lemma:70'
+1.779545 Air      b'lemma:Aerobic'
+1.771582 Gversion b'lemma:chip-seq'
+1.766211 Med      b'word[:1]:L'
+1.758126 O        b'+2:lemma:fructose'
+1.756952 O        b'-1:lemma:media'
+1.756327 O        b'lemma:b'
+1.748259 O        b'word[:2]:ch'
+1.737653 O        b'+1:lemma:250'
+1.731658 Supp     b'lemma:nitrate'
+1.713215 Gtype    b'+1:lemma:type'
+1.710562 Med      b'word[:1]:M'
+1.691656 Phase    b'+1:lemma:phase'
+1.685599 Gtype    b'word[:1]:d'
+1.683678 Temp     b'+1:lemma:\xc2\xb0c'
+1.683098 Supp     b'-1:lemma:+'
+1.680349 O        b'-1:lemma:aerobically'
+1.679518 Supp     b'+2:lemma:for'
+1.667720 Phase    b'word[:2]:ex'
+1.664701 Supp     b'word[:2]:ac'
+1.660497 Gtype    b'word[:1]:F'
+1.651765 Gtype    b'word[:2]:PK'
+1.639770 Gtype    b'lemma:flag-tag'
+1.639770 Gtype    b'-1:lemma:c-terminal'
+1.636705 Supp     b'-2:lemma:argr'
+1.635237 Gtype    b'word[:2]:WT'
+1.629154 O        b'lemma:Nac'
+1.628538 Air      b'word[:1]:a'
+1.628414 Med      b'lemma:minimal'
+1.627212 O        b'word[:2]:ha'
+1.626169 Gtype    b'+1:lemma:with'
+1.625888 O        b'+1:postag:NNP'
+1.619736 O        b'+1:lemma:chip-seq'
+1.607311 Supp     b'lemma:fructose'
+1.604728 Gtype    b'-2:lemma:genotype'
+1.603557 Gtype    b'lemma:nsrr'
+1.603557 Gtype    b'word[:2]:Ns'
+1.603074 Supp     b'lemma:glucose'
+1.602745 O        b'-1:lemma:\xc2\xb0c'
+1.598758 Med      b'+2:lemma:b2'
+1.598354 Gtype    b'-1:lemma:_'
+1.594027 Supp     b'lemma:Leu'
+1.594027 Supp     b'word[:2]:Le'
+1.594027 Supp     b'-2:lemma:Lrp'
+1.591661 O        b'lemma:A'
+1.582547 O        b'-1:lemma:Aerobic'
+1.575327 Supp     b'+1:lemma:_'
+1.570281 O        b'word[:1]:R'
+1.568703 O        b'-2:lemma:flagtag'
+1.565893 Phase    b'+2:lemma:o.d.'
+1.551889 Supp     b'lemma:no3'
+1.551889 Supp     b'word[:2]:NO'
+1.548644 Gtype    b'+1:lemma:flagtag'
+1.540544 Supp     b'-2:lemma:media'
+1.538313 O        b'+1:lemma:od600'
+1.531185 Supp     b'-2:lemma:induce'
+1.528143 Temp     b'-1:lemma:43'
+1.521079 Supp     b'word[:2]:Fe'
+1.519815 Gtype    b'+2:lemma:glucose'
+1.509812 Supp     b'word[:2]:gl'
+1.505012 O        b'-1:lemma:lb'
+1.504397 Supp     b'lemma:Adenine'
+1.504397 Supp     b'word[:2]:Ad'
+1.493982 Air      b'-2:lemma:%'
+1.493425 Technique b'word[:1]:C'
+1.484047 Technique b'lemma:ChIP-exo'
+1.484009 Supp     b'+2:lemma:rifampicin'
+1.481786 Supp     b'-2:lemma:purr'
+1.476648 Supp     b'-1:lemma:sodium'
+1.476648 Supp     b'+2:lemma:1/100'
+1.475748 Temp     b'lemma:43'
+1.475748 Temp     b'word[:2]:43'
+1.475312 Anti     b'word[:2]:an'
+1.472220 Temp     b'-2:lemma:\xcf\x8332'
+1.460306 Supp     b'-2:lemma:condition'
+1.458045 Temp     b'-1:lemma:\xcf\x8332'
+1.452126 O        b'postag:IN'
+1.452126 O        b'postag[:1]:I'
+1.452126 O        b'postag[:2]:IN'
+1.446316 Gtype    b'-1:lemma:rpob'
+1.445179 O        b'+2:postag:JJ'
+1.441264 Gtype    b'word[:1]:w'
+1.409352 Supp     b'-2:lemma:agent'
+1.398563 Phase    b'word[:1]:e'
+1.391992 Gtype    b'-2:lemma:delta'
+1.390517 Strain   b'+1:lemma:substr'
+1.390517 Strain   b'-2:lemma:str'
+1.386478 O        b'word[:1]:-'
+1.383676 O        b'-2:lemma:no3'
+1.382867 Supp     b'word[:1]:N'
+1.379586 O        b'lemma:growth'
+1.375672 O        b'word[:2]:In'
+1.373601 O        b'-2:lemma:='
+1.372653 Air      b'+1:postag:IN'
+1.369649 Air      b'-1:lemma:ChIP-Seq'
+1.366267 Technique b'+2:lemma:ph5'
+1.363638 O        b'postag:CC'
+1.363638 O        b'postag[:2]:CC'
+1.362930 Air      b'-2:lemma:IP'
+1.357050 Gtype    b'-1:postag:VBG'
+1.356760 Gtype    b'word[:2]:Ar'
+1.356125 pH       b'word[:1]:p'
+1.352664 Gtype    b'lemma:arca8myc'
+1.352664 Gtype    b'-2:lemma:chip-arca'
+1.351882 Gversion b'-2:lemma:build'
+1.351286 Substrain b'+1:lemma:phtpg'
+1.349261 Gtype    b'symb'
+1.346252 Gtype    b'-2:lemma:affyexp'
+1.345488 Air      b'lemma:aerobic'
+1.336503 pH       b'lemma:ph5'
+
+
+Top negative:
+-0.330183 O        b'lemma:aerobically'
+-0.333091 Gtype    b'word[:1]:-'
+-0.337229 O        b'+2:lemma:for'
+-0.338988 Anti     b'+2:postag:JJ'
+-0.340025 Phase    b'+1:lemma:pahse'
+-0.345106 O        b'+1:lemma:phosphate'
+-0.350740 O        b'-2:lemma:fresh'
+-0.359220 Supp     b'+2:postag:NNP'
+-0.360686 O        b'lemma:glucose'
+-0.363021 Technique b'lemma:chip-exo'
+-0.365042 O        b'lemma:sodium'
+-0.374157 Supp     b'+2:postag::'
+-0.387303 O        b'-2:lemma:a'
+-0.389190 Supp     b'-2:postag:NNS'
+-0.391761 O        b'+2:lemma:0.2'
+-0.392117 O        b'-1:lemma:g/l'
+-0.393789 O        b'lemma:250'
+-0.396500 Supp     b'postag:JJ'
+-0.398947 Supp     b'postag[:1]:J'
+-0.398947 Supp     b'postag[:2]:JJ'
+-0.401893 O        b'-2:postag:SYM'
+-0.403955 O        b'word[:2]:me'
+-0.405899 O        b'-1:lemma:contain'
+-0.407741 O        b'+2:lemma:at'
+-0.407872 O        b'-2:postag:DT'
+-0.409919 Vess     b'hUpper'
+-0.409919 Vess     b'hLower'
+-0.416096 Air      b'postag:NN'
+-0.419923 Supp     b'-2:postag:NN'
+-0.420193 Supp     b'-1:lemma:-lrb-'
+-0.422451 O        b'+1:lemma:supplement'
+-0.426042 Med      b'+1:postag:IN'
+-0.428819 Supp     b'+2:lemma:acetate'
+-0.433421 Temp     b'postag:NN'
+-0.442149 Supp     b'+2:postag:NN'
+-0.442542 O        b'word[:1]:F'
+-0.448178 Phase    b'postag:JJ'
+-0.453154 Temp     b'hGreek'
+-0.454481 O        b'+2:lemma:genome'
+-0.456569 Supp     b'-2:lemma:grow'
+-0.456675 Supp     b'+2:lemma:glucose'
+-0.461633 O        b'lemma:methanol'
+-0.461633 O        b'-2:lemma:dissolve'
+-0.463555 Supp     b'-1:postag:-LRB-'
+-0.470483 O        b'word[:2]:ce'
+-0.474148 O        b'word[:1]:K'
+-0.478774 OD       b'+2:postag:NN'
+-0.479416 O        b'-1:lemma:iptg'
+-0.482417 O        b'-1:lemma:ml'
+-0.482582 Med      b'-2:postag:VBN'
+-0.493533 O        b'+1:postag:IN'
+-0.494661 O        b'-2:lemma:phase'
+-0.500742 O        b'lemma:37'
+-0.500742 O        b'word[:2]:37'
+-0.503770 Gtype    b'+1:lemma:-rrb-'
+-0.509384 O        b'-1:lemma:grow'
+-0.512233 O        b'+1:lemma:m'
+-0.512351 Gtype    b'word[:1]:h'
+-0.529387 O        b'+2:lemma:reference'
+-0.532265 O        b'lemma:anaerobically'
+-0.540496 O        b'word[:2]:mg'
+-0.548480 O        b'word[:2]:pH'
+-0.550459 Gtype    b'-1:lemma:mg1655'
+-0.550831 Supp     b'-1:postag:NNP'
+-0.554325 O        b'word[:2]:Fe'
+-0.555780 O        b'+2:lemma:.'
+-0.555780 O        b'+2:postag:.'
+-0.565490 O        b'word[:1]:\xce\x94'
+-0.573716 O        b'lemma:aerobic'
+-0.581553 O        b'-2:postag:RB'
+-0.582735 O        b'-1:lemma:dissolve'
+-0.582735 O        b'+1:lemma:methanol'
+-0.583732 O        b'-1:lemma:fresh'
+-0.584010 O        b'-2:lemma:nh4cl'
+-0.585197 O        b'word[:2]:ri'
+-0.587643 Phase    b'postag[:1]:J'
+-0.587643 Phase    b'postag[:2]:JJ'
+-0.594097 O        b'-2:lemma:genome'
+-0.594675 Supp     b'-2:lemma:treat'
+-0.594880 O        b'+1:lemma:1m'
+-0.594880 O        b'-2:lemma:vol'
+-0.598558 O        b'-1:lemma:30'
+-0.612132 O        b'lemma:2h'
+-0.612132 O        b'-1:lemma:additional'
+-0.612132 O        b'word[:2]:2h'
+-0.614071 O        b'-2:lemma:control'
+-0.625762 O        b'-1:lemma:until'
+-0.628113 Agit     b'hUpper'
+-0.628113 Agit     b'hLower'
+-0.629464 O        b'+1:postag:VBG'
+-0.630986 O        b'-2:lemma:aerobically'
+-0.640153 O        b'-2:lemma:pahse'
+-0.640520 O        b'lemma:media'
+-0.645230 O        b'+2:lemma:fnr'
+-0.647923 O        b'lemma:\xe2\x88\x86'
+-0.647923 O        b'word[:1]:\xe2\x88\x86'
+-0.648261 Supp     b'+1:lemma:-lrb-'
+-0.648721 O        b'+2:lemma:10'
+-0.649047 Med      b'symb'
+-0.658009 O        b'-1:lemma:vol'
+-0.658009 O        b'-2:lemma:1/100'
+-0.658009 O        b'+2:lemma:1m'
+-0.658618 O        b'lemma:rifampicin'
+-0.660887 O        b'+1:lemma:rep2'
+-0.661727 Supp     b'+1:postag:-LRB-'
+-0.665690 Supp     b'hGreek'
+-0.675815 O        b'-1:lemma:37'
+-0.677865 O        b'word[:2]:0.'
+-0.679218 O        b'+1:lemma:g/l'
+-0.696412 O        b'lemma:30'
+-0.698147 O        b'-1:lemma:cra'
+-0.699397 Supp     b'lemma:1'
+-0.701578 O        b'-2:lemma:supplement'
+-0.702738 O        b'-2:postag::'
+-0.703354 O        b'-1:lemma:IP'
+-0.710621 O        b'+2:postag:-RRB-'
+-0.719378 Temp     b'-2:postag:NN'
+-0.722820 O        b'+1:lemma:phase'
+-0.725117 O        b'word[:1]:M'
+-0.725209 O        b'word[:1]:L'
+-0.728868 Supp     b'+1:lemma:,'
+-0.728868 Supp     b'+1:postag:,'
+-0.729747 O        b'-1:lemma:co2'
+-0.732049 O        b'word[:1]:0'
+-0.732854 O        b'lemma:anaerobic'
+-0.737211 Agit     b'symb'
+-0.737781 O        b'+1:lemma:_'
+-0.738890 O        b'+1:lemma:until'
+-0.746903 O        b'-1:lemma:2'
+-0.753105 Anti     b'+2:lemma:polyclonal'
+-0.756009 Supp     b'+1:postag:NNS'
+-0.762043 Supp     b'word[:2]:an'
+-0.766144 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.782585 O        b'-1:lemma:1'
+-0.783172 Technique b'postag:NN'
+-0.791028 O        b'-2:lemma:dpd'
+-0.791117 Gtype    b'postag[:1]:V'
+-0.791117 Gtype    b'postag[:2]:VB'
+-0.795652 O        b'+2:lemma:mid-log'
+-0.814979 O        b'lemma:fructose'
+-0.818308 O        b'+2:lemma:tag'
+-0.819349 O        b'word[:1]:4'
+-0.827940 Phase    b'-1:postag:JJ'
+-0.840950 O        b'+2:lemma:b'
+-0.843002 O        b'+2:lemma:+'
+-0.847830 Supp     b'-2:postag:JJ'
+-0.872363 O        b'word[:1]:d'
+-0.873207 O        b'lemma:nitrate'
+-0.882236 O        b'+2:lemma:250'
+-0.891744 O        b'-2:lemma:IP'
+-0.894472 O        b'-2:lemma::'
+-0.913166 O        b'-2:lemma:0.3'
+-0.917548 O        b'+2:lemma:then'
+-0.918623 Air      b'-1:postag:JJ'
+-0.971796 O        b'lemma:0.3'
+-0.992363 Anti     b'+1:lemma:anti-fur'
+-1.000844 O        b'word[:2]:fl'
+-1.013750 O        b'+1:lemma:2.0'
+-1.026340 O        b'lemma:mid-log'
+-1.036499 O        b'word[:2]:ni'
+-1.065659 Phase    b'hUpper'
+-1.065659 Phase    b'hLower'
+-1.068286 O        b'-1:postag::'
+-1.083222 O        b'word[:2]:30'
+-1.097164 O        b'+1:lemma:+'
+-1.104071 O        b'-2:lemma:until'
+-1.119190 Supp     b'word[:1]:C'
+-1.133243 Supp     b'symb'
+-1.144789 O        b'-1:lemma:\xe2\x88\x86'
+-1.146624 O        b'-2:lemma:rifampicin'
+-1.150733 O        b'-1:lemma:ph'
+-1.195095 Gtype    b'word[:1]:C'
+-1.198322 OD       b'+1:postag:NN'
+-1.211645 Supp     b'+2:lemma:1'
+-1.218440 O        b'-1:lemma:nsrr'
+-1.228481 Anti     b'postag:NNP'
+-1.235955 Med      b'+2:postag:VBN'
+-1.254294 O        b'word[:1]:N'
+-1.260075 O        b'-2:lemma:media'
+-1.274766 O        b'postag:VBP'
+-1.280395 O        b'-1:lemma:sample'
+-1.291770 Supp     b'+2:postag:CD'
+-1.323295 Gtype    b'+2:lemma:cra'
+-1.334984 O        b'lemma:wt'
+-1.365178 Supp     b'+2:lemma:2'
+-1.369037 O        b'+2:lemma:rifampicin'
+-1.402494 O        b'+1:lemma:in'
+-1.453133 O        b'+1:lemma:at'
+-1.489269 O        b'-1:lemma:rpob'
+-1.489467 Med      b'-2:lemma:grow'
+-1.507468 O        b'-1:lemma:final'
+-1.645797 O        b'word[:1]:P'
+-1.693990 Supp     b'+2:lemma:fructose'
+-1.865218 O        b'+1:lemma:1'
+-1.868753 O        b'-1:postag:VBG'
+-1.947849 O        b'+1:lemma:2'
+-1.949557 OD       b'+2:lemma:aerobically'
+-1.994778 O        b'word[:2]:Ch'
+-3.488442 O        b'-1:lemma::'
+-3.970946 O        b'-1:lemma:_'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.216886783747496, 'c2': 0.06401679314680564}
+best CV score:0.8628969551909399
+model size: 0.09M
+
+Flat F1: 0.7959513846538584
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.943     0.971        53
+       Temp      0.923     0.828     0.873        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.543     0.362     0.435        69
+       Anti      0.917     1.000     0.957        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.814     0.824     0.819        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.796     0.813     0.804       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.821     0.778     0.796       451
+
+
+Top likely transitions:
+Agit   -> Agit    5.554988
+Supp   -> Supp    5.075372
+Temp   -> Temp    4.962367
+OD     -> OD      4.808863
+Med    -> Med     4.722789
+Air    -> Air     4.233855
+O      -> O       3.842262
+Anti   -> Anti    3.839550
+Phase  -> Phase   3.786109
+Gversion -> Gversion 3.561515
+Gtype  -> Gtype   3.500625
+Technique -> Technique 2.701288
+pH     -> pH      2.368505
+Air    -> O       1.248758
+O      -> Supp    1.184530
+Supp   -> O       1.041831
+O      -> Technique 0.884981
+Substrain -> Gtype   0.835591
+Gtype  -> Supp    0.610921
+Med    -> O       0.552574
+O      -> Gtype   0.514570
+Gtype  -> Air     0.471576
+Temp   -> O       0.349650
+Technique -> Air     0.330874
+O      -> Phase   0.267311
+Phase  -> O       0.188152
+O      -> Temp    0.115742
+OD     -> O       0.034158
+pH     -> O       0.026851
+O      -> Anti    0.018274
+Supp   -> Gtype   -0.000011
+Technique -> Supp    -0.000552
+O      -> OD      -0.010291
+Gtype  -> Gversion -0.047313
+Anti   -> Gtype   -0.071853
+Agit   -> Air     -0.100169
+Gtype  -> Anti    -0.102605
+Gversion -> O       -0.105812
+Supp   -> Med     -0.143033
+Technique -> pH      -0.232213
+Technique -> Gtype   -0.267078
+OD     -> Air     -0.314439
+O      -> Air     -0.465381
+Gtype  -> Med     -0.468979
+Technique -> O       -0.504446
+Gtype  -> Technique -0.550704
+Gtype  -> O       -0.582351
+Substrain -> O       -0.875234
+Med    -> Supp    -1.007844
+
+
+Top unlikely transitions:
+Agit   -> Agit    5.554988
+Supp   -> Supp    5.075372
+Temp   -> Temp    4.962367
+OD     -> OD      4.808863
+Med    -> Med     4.722789
+Air    -> Air     4.233855
+O      -> O       3.842262
+Anti   -> Anti    3.839550
+Phase  -> Phase   3.786109
+Gversion -> Gversion 3.561515
+Gtype  -> Gtype   3.500625
+Technique -> Technique 2.701288
+pH     -> pH      2.368505
+Air    -> O       1.248758
+O      -> Supp    1.184530
+Supp   -> O       1.041831
+O      -> Technique 0.884981
+Substrain -> Gtype   0.835591
+Gtype  -> Supp    0.610921
+Med    -> O       0.552574
+O      -> Gtype   0.514570
+Gtype  -> Air     0.471576
+Temp   -> O       0.349650
+Technique -> Air     0.330874
+O      -> Phase   0.267311
+Phase  -> O       0.188152
+O      -> Temp    0.115742
+OD     -> O       0.034158
+pH     -> O       0.026851
+O      -> Anti    0.018274
+Supp   -> Gtype   -0.000011
+Technique -> Supp    -0.000552
+O      -> OD      -0.010291
+Gtype  -> Gversion -0.047313
+Anti   -> Gtype   -0.071853
+Agit   -> Air     -0.100169
+Gtype  -> Anti    -0.102605
+Gversion -> O       -0.105812
+Supp   -> Med     -0.143033
+Technique -> pH      -0.232213
+Technique -> Gtype   -0.267078
+OD     -> Air     -0.314439
+O      -> Air     -0.465381
+Gtype  -> Med     -0.468979
+Technique -> O       -0.504446
+Gtype  -> Technique -0.550704
+Gtype  -> O       -0.582351
+Substrain -> O       -0.875234
+Med    -> Supp    -1.007844
+
+
+Top positive:
+4.945315 O        b'lemma:2'
+4.341746 Anti     b'-2:lemma:antibody'
+4.195357 O        b'lemma:1'
+4.099828 O        b'postag:IN'
+4.036396 Technique b'lemma[:2]:Ch'
+3.544794 O        b'lemma:3'
+3.385486 O        b'-2:lemma:_'
+3.361181 Gtype    b'lemma[:1]:\xce\xb4'
+3.048558 O        b'lemma[:2]:re'
+2.941595 Air      b'lemma[:2]:ae'
+2.883410 Gtype    b'-1:lemma:\xe2\x88\x86'
+2.795385 O        b'lemma:.'
+2.795385 O        b'postag:.'
+2.774702 O        b'lemma:with'
+2.761558 O        b'postag:CC'
+2.733259 Phase    b'lemma:mid-log'
+2.669708 Technique b'lemma:chipseq'
+2.662398 O        b'lemma:_'
+2.662398 O        b'lemma[:1]:_'
+2.660918 Air      b'lemma:anaerobic'
+2.627297 O        b'postag::'
+2.598463 Gtype    b'lemma:type'
+2.598463 Gtype    b'lemma[:2]:ty'
+2.432498 Substrain b'lemma[:2]:mg'
+2.400856 O        b'postag:VBN'
+2.383489 Supp     b'-1:lemma:with'
+2.343528 O        b'lemma:b'
+2.312992 O        b'lemma[:1]:h'
+2.296178 Supp     b'lemma:acetate'
+2.250448 OD       b'lemma[:1]:o'
+2.249155 O        b'lemma:-'
+2.239976 Supp     b'+2:lemma:iptg'
+2.231349 O        b'lemma:a'
+2.225541 Air      b'lemma[:2]:an'
+2.205886 O        b'lemma[:1]:-'
+2.191486 Supp     b'lemma:arginine'
+2.188955 Supp     b'-1:lemma:Cra'
+2.152971 Technique b'lemma[:2]:rn'
+2.138683 O        b'+2:lemma:\xc2\xb0c'
+2.118949 O        b'lemma[:2]:ge'
+2.063110 Supp     b'lemma:pq'
+2.063110 Supp     b'lemma[:2]:pq'
+2.058471 Technique b'lemma[:2]:ch'
+2.053130 Supp     b'+1:lemma:1'
+2.052724 Gtype    b'-2:lemma:genotype/variation'
+2.032657 Gtype    b'+1:lemma:type'
+2.018103 O        b'-2:lemma:medium'
+2.013044 Phase    b'-2:lemma:phase'
+1.969228 Anti     b'+2:lemma:antibody'
+1.917771 Med      b'+2:postag:CC'
+1.912680 O        b'+1:lemma:pq'
+1.908997 pH       b'+1:postag:CD'
+1.892742 O        b'-2:lemma:myc'
+1.861128 Supp     b'+1:lemma:\xc2\xb5m'
+1.848815 Substrain b'lemma[:1]:m'
+1.826357 O        b'-1:lemma:tag'
+1.822886 Air      b'lemma:Aerobic'
+1.822886 Air      b'lemma[:2]:Ae'
+1.819467 Supp     b'lemma:Iron'
+1.819467 Supp     b'lemma[:2]:Ir'
+1.819467 Supp     b'-2:lemma:Anaerobic'
+1.817872 O        b'-1:lemma:anaerobic'
+1.815269 Air      b'-1:lemma:ChIP-Seq'
+1.810754 Gtype    b'lemma:\xe2\x88\x86'
+1.810754 Gtype    b'lemma[:1]:\xe2\x88\x86'
+1.802850 Anti     b'+1:lemma:antibody'
+1.793608 Gtype    b'-2:lemma:delta'
+1.790256 Anti     b'lemma[:2]:an'
+1.782356 O        b'postag:DT'
+1.779445 O        b'-1:lemma:glucose'
+1.758763 Gtype    b'lemma:wt'
+1.758763 Gtype    b'lemma[:2]:wt'
+1.738367 Gtype    b'lemma[:2]:pk'
+1.734234 Supp     b'lemma[:2]:ac'
+1.720838 Air      b'lemma[:1]:a'
+1.712115 Gtype    b'hGreek'
+1.699093 pH       b'lemma[:2]:ph'
+1.692913 O        b'+1:postag:RB'
+1.678980 Gtype    b'lemma:nsrr'
+1.678980 Gtype    b'lemma[:2]:ns'
+1.669471 Technique b'lemma[:1]:C'
+1.654089 Med      b'lemma:MOPS'
+1.654089 Med      b'lemma[:1]:M'
+1.654089 Med      b'lemma[:2]:MO'
+1.627991 Air      b'-2:lemma:IP'
+1.617309 Gtype    b'lemma[:1]:w'
+1.595727 O        b'lemma[:1]:b'
+1.590514 Gversion b'lemma:chip-seq'
+1.582529 O        b'lemma:rpob'
+1.580157 Air      b'postag:RB'
+1.561107 O        b'lemma[:1]:c'
+1.551094 Supp     b'lemma:no3'
+1.548068 O        b'+2:lemma:cra'
+1.540664 O        b'+2:postag:JJ'
+1.527844 Phase    b'lemma[:2]:ex'
+1.519293 O        b'-1:lemma:0.3'
+1.517005 Air      b'-1:lemma:-'
+1.516109 Supp     b'+1:lemma:2'
+1.511280 Supp     b'lemma[:1]:I'
+1.508371 O        b'-1:lemma:lb'
+1.496440 O        b'lemma[:1]:r'
+1.490081 Supp     b'+1:lemma:_'
+1.462019 Air      b'-2:lemma:%'
+1.448517 O        b'+1:postag:NNP'
+1.437005 Supp     b'-2:lemma:agent'
+1.427410 Med      b'+2:lemma:b2'
+1.427381 Supp     b'-1:postag:CC'
+1.427067 Gtype    b'+1:lemma:with'
+1.426523 Temp     b'-1:lemma:\xcf\x8332'
+1.417716 Gtype    b'+2:lemma:glucose'
+1.414055 Supp     b'lemma[:2]:gl'
+1.403575 O        b'lemma:0.4'
+1.399935 O        b'lemma[:1]:s'
+1.398381 O        b'+1:lemma:coli'
+1.396647 O        b'-1:lemma:Aerobic'
+1.395651 O        b'lemma[:1]:a'
+1.376438 Temp     b'lemma[:1]:3'
+1.375520 Med      b'lemma:broth'
+1.375520 Med      b'-1:lemma:L'
+1.375520 Med      b'lemma[:2]:br'
+1.370316 Temp     b'lemma:43'
+1.370316 Temp     b'lemma[:2]:43'
+1.364176 O        b'-2:lemma:no3'
+1.359800 Med      b'+1:lemma:0.4'
+1.358059 Gtype    b'lemma[:1]:f'
+1.356613 Temp     b'-2:lemma:\xcf\x8332'
+1.352851 Med      b'lemma[:1]:m'
+1.350253 Temp     b'-1:lemma:sample'
+1.345652 Supp     b'-1:lemma:+'
+1.343022 O        b'-1:lemma:ChIP-exo'
+1.341728 Temp     b'+1:lemma:\xc2\xb0c'
+1.341676 Supp     b'-2:lemma:for'
+1.334197 Med      b'lemma:lb'
+1.334197 Med      b'lemma[:2]:lb'
+1.323689 O        b'+2:lemma:70'
+1.320454 O        b'lemma[:1]:C'
+1.317446 Supp     b'lemma:fructose'
+1.316176 Temp     b'-1:lemma:43'
+1.310735 O        b'+2:lemma:of'
+1.307493 Gtype    b'-1:lemma:_'
+1.291050 Air      b'lemma[:1]:A'
+1.270256 Gtype    b'+1:lemma::'
+1.265788 Gtype    b'lemma[:1]:W'
+1.263375 Supp     b'lemma:rifampicin'
+1.260542 pH       b'lemma:ph5'
+1.260542 pH       b'+1:lemma:.5'
+1.256282 Supp     b'lemma[:2]:ri'
+1.248005 Gtype    b'-2:lemma:genotype'
+1.238880 Gtype    b'lemma[:2]:ar'
+1.230717 Supp     b'lemma[:1]:n'
+1.230211 Supp     b'lemma[:2]:fr'
+1.227615 Gtype    b'-2:postag:DT'
+1.223309 Phase    b'-1:lemma:mid-log'
+1.214876 O        b'lemma:A'
+1.212092 O        b'-2:lemma:ChIP-Seq'
+1.211550 Technique b'symb'
+1.210489 Supp     b'-1:postag:CD'
+1.207243 Supp     b'+2:lemma:rifampicin'
+1.196436 Supp     b'lemma:glucose'
+1.194146 Technique b'-2:lemma:wt'
+1.191991 Technique b'-1:lemma:input'
+1.184869 Air      b'+1:postag:IN'
+1.180469 O        b'lemma:chip'
+1.176262 Gtype    b'lemma[:2]:fl'
+1.175702 Technique b'-1:lemma:_'
+1.174787 Supp     b'-2:lemma:media'
+1.161899 Supp     b'-2:lemma:induce'
+1.161883 Technique b'+2:lemma:ph5'
+1.160285 O        b'+1:lemma:od600'
+1.157966 Gtype    b'-1:lemma:rpob'
+1.157628 Supp     b'-2:lemma:supplement'
+1.156345 Supp     b'-1:lemma:_'
+1.152383 O        b'postag:NNS'
+1.151993 Gtype    b'lemma[:2]:de'
+1.151326 O        b'-2:postag:FW'
+1.150033 Gversion b'lemma:nc'
+1.150033 Gversion b'lemma[:2]:nc'
+1.146428 O        b'-1:postag:NNS'
+1.146219 Temp     b'+2:postag:DT'
+1.145615 Phase    b'lemma[:1]:e'
+1.141344 Technique b'-1:lemma:chip-exo'
+1.138300 O        b'+2:lemma:fructose'
+1.135372 Strain   b'+1:lemma:substr'
+1.135372 Strain   b'-2:lemma:str'
+1.134450 Supp     b'+1:lemma:mm'
+1.134095 Technique b'lemma:ChIP-exo'
+1.127452 O        b'-1:lemma:\xc2\xb0c'
+1.123950 O        b'lemma[:2]:ga'
+1.123563 O        b'-1:lemma:aerobically'
+1.121892 Air      b'-1:lemma:co2'
+1.121232 O        b'lemma:Cra'
+1.119372 Gtype    b'-1:postag:VBG'
+1.110682 Agit     b'lemma:rpm'
+1.102814 O        b'lemma:ml'
+1.102814 O        b'lemma[:2]:ml'
+1.100677 Gtype    b'-2:postag::'
+1.098179 Gversion b'lemma[:2]:00'
+1.098179 Gversion b'-2:lemma:nc'
+1.095659 O        b'+1:postag:VBN'
+1.095182 Gtype    b'+1:lemma:flagtag'
+
+
+Top negative:
+-0.181799 O        b'-1:lemma:minimal'
+-0.182920 O        b'lemma[:2]:an'
+-0.183892 O        b'+1:postag:-LRB-'
+-0.185276 O        b'-1:postag:-LRB-'
+-0.186866 O        b'lemma:co2'
+-0.188027 Supp     b'lemma[:1]:o'
+-0.190218 Supp     b'-2:lemma:treat'
+-0.191930 O        b'-1:lemma:g/l'
+-0.195921 O        b'lemma[:1]:I'
+-0.197205 Supp     b'lemma[:2]:an'
+-0.197254 Gtype    b'lemma[:1]:-'
+-0.202475 Med      b'-1:postag:CD'
+-0.204438 O        b'+1:lemma:1/100'
+-0.204438 O        b'-2:lemma:sodium'
+-0.204438 O        b'+2:lemma:vol'
+-0.209335 Supp     b'+2:lemma:glucose'
+-0.209547 Med      b'+1:postag:NN'
+-0.209855 O        b'-2:lemma:genome'
+-0.217016 O        b'-1:lemma:the'
+-0.222607 O        b'+1:lemma:_'
+-0.224716 pH       b'postag:NN'
+-0.224816 O        b'lemma[:2]:0.'
+-0.226096 Gtype    b'-2:postag:IN'
+-0.230261 Air      b'symb'
+-0.237585 O        b'lemma[:1]:d'
+-0.238640 O        b'lemma[:1]:k'
+-0.241721 O        b'-1:lemma:ml'
+-0.242115 Technique b'-2:postag:NN'
+-0.243901 O        b'lemma:methanol'
+-0.243901 O        b'-2:lemma:dissolve'
+-0.244002 Supp     b'-2:postag:-LRB-'
+-0.249340 O        b'-1:lemma:1m'
+-0.249340 O        b'+2:lemma:7.6'
+-0.249697 Supp     b'-1:postag:-LRB-'
+-0.249998 O        b'lemma:30'
+-0.253734 O        b'-2:lemma:rpob'
+-0.255409 O        b'-2:lemma:fresh'
+-0.256485 Supp     b'lemma[:1]:a'
+-0.264086 Supp     b'lemma:1'
+-0.271675 Gtype    b'-1:lemma:-lrb-'
+-0.272687 Gtype    b'-1:lemma:mg1655'
+-0.273508 Supp     b'hGreek'
+-0.275591 Supp     b'postag:CD'
+-0.277360 O        b'lemma:wt'
+-0.277360 O        b'lemma[:2]:wt'
+-0.279018 Gtype    b'-2:postag:CD'
+-0.285813 Supp     b'+2:lemma:-rrb-'
+-0.291830 Temp     b'-2:postag:NN'
+-0.293279 O        b'lemma:media'
+-0.299936 O        b'-2:lemma:mm'
+-0.303152 Med      b'-1:postag:NN'
+-0.305132 Gtype    b'postag:VBG'
+-0.311471 O        b'lemma:2h'
+-0.311471 O        b'-1:lemma:additional'
+-0.311471 O        b'lemma[:2]:2h'
+-0.315237 O        b'lemma:anaerobic'
+-0.317197 O        b'-2:lemma:IP'
+-0.321974 O        b'-2:lemma:supplement'
+-0.323791 O        b'-2:lemma:nh4cl'
+-0.325166 Temp     b'hGreek'
+-0.325746 O        b'-2:lemma:anaerobically'
+-0.331627 OD       b'hUpper'
+-0.331627 OD       b'hLower'
+-0.334399 Gtype    b'lemma[:1]:g'
+-0.334670 Supp     b'+1:postag:-RRB-'
+-0.335261 O        b'-2:lemma:glucose'
+-0.340278 O        b'postag:VBP'
+-0.347843 O        b'lemma[:1]:L'
+-0.348884 Air      b'+1:postag:JJ'
+-0.349719 O        b'+1:lemma:1m'
+-0.349719 O        b'-2:lemma:vol'
+-0.355444 Gtype    b'+1:lemma:-rrb-'
+-0.362398 O        b'+2:lemma:a'
+-0.363139 Supp     b'+2:postag:NNP'
+-0.363539 O        b'+2:lemma:at'
+-0.373919 O        b'lemma:anaerobically'
+-0.379359 Supp     b'-2:postag:NNS'
+-0.382724 O        b'+1:lemma:.'
+-0.382724 O        b'+1:postag:.'
+-0.388857 O        b'-2:postag:-LRB-'
+-0.407105 Supp     b'+2:postag:-RRB-'
+-0.412054 O        b'+2:lemma:.'
+-0.412054 O        b'+2:postag:.'
+-0.413334 Supp     b'+1:lemma:-lrb-'
+-0.416341 O        b'lemma[:1]:n'
+-0.418014 O        b'lemma[:1]:0'
+-0.424605 Med      b'+1:postag:IN'
+-0.427442 Supp     b'+1:postag:-LRB-'
+-0.429806 O        b'+1:lemma:supplement'
+-0.432187 O        b'-2:lemma:until'
+-0.435863 Gtype    b'lemma[:1]:h'
+-0.436389 Technique b'-1:postag::'
+-0.438245 O        b'-1:lemma:cra'
+-0.439539 O        b'-1:lemma:30'
+-0.440803 Supp     b'symb'
+-0.443573 Med      b'+2:postag:VBN'
+-0.444210 O        b'-1:lemma:dissolve'
+-0.444210 O        b'+1:lemma:methanol'
+-0.445532 O        b'-1:lemma:mm'
+-0.446820 O        b'-2:lemma:phase'
+-0.450190 O        b'+2:lemma:-rrb-'
+-0.451058 Supp     b'-1:postag:NNP'
+-0.451224 O        b'-1:lemma:iptg'
+-0.453056 O        b'-1:postag:IN'
+-0.465158 Gtype    b'lemma[:1]:c'
+-0.465723 O        b'+2:lemma:tag'
+-0.468785 O        b'lemma[:2]:ar'
+-0.475738 Supp     b'lemma[:1]:s'
+-0.478308 O        b'lemma:glucose'
+-0.482478 O        b'+2:lemma:10'
+-0.492471 O        b'lemma[:2]:gl'
+-0.496458 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.510030 O        b'-2:lemma:dpd'
+-0.515565 O        b'lemma:0.3'
+-0.520091 O        b'+1:postag:VBG'
+-0.522258 O        b'-2:lemma:pahse'
+-0.522746 O        b'-2:postag:SYM'
+-0.537818 Supp     b'-2:postag:JJ'
+-0.545668 Gtype    b'lemma[:1]:r'
+-0.551002 Temp     b'postag:NN'
+-0.558760 Agit     b'symb'
+-0.559204 Phase    b'postag:JJ'
+-0.565136 Supp     b'+1:lemma:,'
+-0.565136 Supp     b'+1:postag:,'
+-0.571466 O        b'-2:lemma:2'
+-0.575665 O        b'+1:lemma:until'
+-0.577302 O        b'-1:lemma:vol'
+-0.577302 O        b'-2:lemma:1/100'
+-0.577302 O        b'+2:lemma:1m'
+-0.579486 Med      b'symb'
+-0.581741 O        b'lemma:mid-log'
+-0.584913 O        b'+1:lemma:mm'
+-0.585128 O        b'+1:lemma:g/l'
+-0.586101 Anti     b'+1:lemma:anti-fur'
+-0.588450 Technique b'postag:NN'
+-0.588511 Phase    b'-1:postag:JJ'
+-0.588605 O        b'+2:lemma:fnr'
+-0.590129 O        b'+2:lemma:+'
+-0.590818 O        b'+1:lemma:+'
+-0.593171 O        b'-1:lemma:IP'
+-0.595139 O        b'+2:lemma:mid-log'
+-0.611364 O        b'+1:postag:IN'
+-0.617324 Agit     b'hUpper'
+-0.617324 Agit     b'hLower'
+-0.622906 O        b'+2:lemma:then'
+-0.626564 Gtype    b'lemma[:1]:a'
+-0.627601 O        b'-1:lemma:rpob'
+-0.628334 Supp     b'+1:postag:NNS'
+-0.636204 O        b'-2:postag:DT'
+-0.642751 Med      b'-2:lemma:grow'
+-0.647649 O        b'postag:RB'
+-0.649486 O        b'-1:lemma:final'
+-0.651235 O        b'+2:lemma:b'
+-0.655430 O        b'-1:lemma:\xe2\x88\x86'
+-0.667559 Anti     b'+2:lemma:polyclonal'
+-0.669485 O        b'lemma:of'
+-0.669485 O        b'lemma[:2]:of'
+-0.672853 O        b'-2:lemma::'
+-0.676614 O        b'-1:lemma:ph'
+-0.682840 O        b'-1:lemma:nsrr'
+-0.686283 O        b'+2:postag:-RRB-'
+-0.694618 Air      b'-1:postag:JJ'
+-0.738949 Anti     b'postag:NNP'
+-0.752290 O        b'lemma[:2]:me'
+-0.771704 Phase    b'hUpper'
+-0.771704 Phase    b'hLower'
+-0.788474 OD       b'+2:lemma:aerobically'
+-0.820144 Supp     b'+2:lemma:fructose'
+-0.836881 O        b'-2:lemma:0.3'
+-0.847160 Supp     b'lemma[:1]:c'
+-0.858158 Med      b'-2:postag:VBN'
+-0.861995 O        b'-1:lemma:1'
+-0.862880 Gtype    b'+2:lemma:cra'
+-0.873409 O        b'+1:lemma:at'
+-0.891828 OD       b'+1:postag:NN'
+-0.923198 Air      b'postag:NN'
+-0.925308 Supp     b'+2:lemma:1'
+-0.925325 O        b'lemma[:2]:ri'
+-0.933014 O        b'+1:lemma:2.0'
+-0.978288 O        b'-2:lemma:media'
+-0.980313 O        b'lemma:rifampicin'
+-1.014527 O        b'-1:lemma:co2'
+-1.018731 O        b'-2:postag:RB'
+-1.030401 Supp     b'+2:lemma:2'
+-1.065251 Supp     b'postag:JJ'
+-1.073645 O        b'+2:lemma:rifampicin'
+-1.083180 O        b'-1:lemma:sample'
+-1.101292 O        b'lemma[:2]:ae'
+-1.117896 O        b'-2:lemma:rifampicin'
+-1.140184 O        b'-1:postag::'
+-1.170288 O        b'lemma[:2]:30'
+-1.232648 Supp     b'+2:postag:CD'
+-1.238805 O        b'-1:lemma:2'
+-1.545952 O        b'-1:postag:VBG'
+-1.640423 O        b'+1:lemma:in'
+-1.646059 O        b'+1:lemma:1'
+-1.993830 O        b'lemma[:2]:fl'
+-2.235667 O        b'+1:lemma:2'
+-3.056150 O        b'-1:lemma::'
+-3.928545 O        b'-1:lemma:_'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.19432865325703363, 'c2': 0.003040980714530674}
+best CV score:0.8693465985146905
+model size: 0.10M
+
+Flat F1: 0.7784025356677224
+             precision    recall  f1-score   support
+
+         OD      1.000     0.818     0.900        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.943     0.971        53
+       Temp      0.923     0.828     0.873        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.895     0.906     0.901        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.600     0.806     0.688       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.782     0.792     0.778       451
+
+
+Top likely transitions:
+Temp   -> Temp    6.494919
+OD     -> OD      6.471344
+Agit   -> Agit    6.119106
+Med    -> Med     5.417640
+Anti   -> Anti    5.342032
+Supp   -> Supp    5.069696
+Air    -> Air     5.063209
+Gversion -> Gversion 4.772781
+Technique -> Technique 4.679875
+Gtype  -> Gtype   4.566983
+Phase  -> Phase   4.367362
+O      -> O       4.012480
+pH     -> pH      3.171066
+Substrain -> Gtype   2.054037
+Gtype  -> Supp    1.338135
+O      -> Technique 1.254842
+O      -> Gtype   0.899456
+Technique -> Air     0.733598
+O      -> Supp    0.690130
+Gtype  -> Air     0.439886
+Air    -> O       0.399521
+Med    -> O       0.355588
+Temp   -> O       0.164789
+O      -> Phase   0.092964
+O      -> OD      0.041552
+Supp   -> O       0.021371
+O      -> Anti    0.011391
+Supp   -> Med     -0.000215
+Phase  -> OD      -0.080887
+Technique -> Gtype   -0.187130
+Air    -> Supp    -0.201431
+O      -> Air     -0.303507
+Technique -> O       -0.393310
+Gtype  -> O       -0.823321
+Substrain -> O       -0.979191
+Med    -> Supp    -2.040767
+
+
+Top unlikely transitions:
+Temp   -> Temp    6.494919
+OD     -> OD      6.471344
+Agit   -> Agit    6.119106
+Med    -> Med     5.417640
+Anti   -> Anti    5.342032
+Supp   -> Supp    5.069696
+Air    -> Air     5.063209
+Gversion -> Gversion 4.772781
+Technique -> Technique 4.679875
+Gtype  -> Gtype   4.566983
+Phase  -> Phase   4.367362
+O      -> O       4.012480
+pH     -> pH      3.171066
+Substrain -> Gtype   2.054037
+Gtype  -> Supp    1.338135
+O      -> Technique 1.254842
+O      -> Gtype   0.899456
+Technique -> Air     0.733598
+O      -> Supp    0.690130
+Gtype  -> Air     0.439886
+Air    -> O       0.399521
+Med    -> O       0.355588
+Temp   -> O       0.164789
+O      -> Phase   0.092964
+O      -> OD      0.041552
+Supp   -> O       0.021371
+O      -> Anti    0.011391
+Supp   -> Med     -0.000215
+Phase  -> OD      -0.080887
+Technique -> Gtype   -0.187130
+Air    -> Supp    -0.201431
+O      -> Air     -0.303507
+Technique -> O       -0.393310
+Gtype  -> O       -0.823321
+Substrain -> O       -0.979191
+Med    -> Supp    -2.040767
+
+
+Top positive:
+8.498661 Air      b'word:Aerobic'
+7.453902 O        b'-1:lemma:ChIP-exo'
+6.772658 Anti     b'-2:lemma:antibody'
+6.165081 Air      b'lemma:anaerobic'
+6.117950 O        b'-2:lemma:flagtag'
+5.590845 O        b'-2:lemma:_'
+5.177165 Gtype    b'lemma:wild-type'
+4.971807 O        b'word:Cra'
+4.836191 Technique b'word:ChIP-Seq'
+4.497459 O        b'+2:lemma:\xc2\xb0c'
+4.382845 Air      b'word:Anaerobic'
+4.352125 Supp     b'-1:word:Cra'
+4.336687 Technique b'lemma:rna-seq'
+4.283630 Technique b'lemma:ChIP-exo'
+4.269702 Supp     b'lemma:nh4cl'
+4.218273 Gtype    b'lemma:type'
+4.218273 Gtype    b'word:type'
+3.961606 Phase    b'-2:lemma:phase'
+3.949218 Gtype    b'-2:lemma:affyexp'
+3.771576 O        b'postag:IN'
+3.727619 Technique b'word:ChIPSeq'
+3.635085 Air      b'postag:RB'
+3.622942 Gtype    b'-2:lemma:genotype/variation'
+3.587121 O        b'-2:lemma:medium'
+3.544455 O        b'lemma:_'
+3.544455 O        b'word:_'
+3.459688 Med      b'lemma:MOPS'
+3.459688 Med      b'word:MOPS'
+3.426079 Gtype    b'-2:lemma:delta'
+3.413198 O        b'lemma:2'
+3.413198 O        b'word:2'
+3.403759 O        b'lemma:3'
+3.403759 O        b'word:3'
+3.349742 Technique b'word:ChIP-exo'
+3.309028 Gtype    b'word:WT'
+3.276517 O        b'lemma:1'
+3.276517 O        b'word:1'
+3.197253 Supp     b'lemma:arginine'
+3.055830 Supp     b'lemma:pq'
+3.055830 Supp     b'word:PQ'
+3.028461 O        b'lemma:.'
+3.028461 O        b'postag:.'
+3.028461 O        b'word:.'
+3.006895 O        b'postag:CC'
+3.001330 Anti     b'+2:lemma:antibody'
+2.880709 Gtype    b'-2:lemma:genotype'
+2.876573 Gversion b'-2:lemma:nc'
+2.875941 O        b'lemma:-'
+2.875941 O        b'word:-'
+2.850665 Phase    b'lemma:mid-log'
+2.850665 Phase    b'word:mid-log'
+2.801983 O        b'-1:word:Aerobic'
+2.799528 Supp     b'lemma:Iron'
+2.799528 Supp     b'word:Iron'
+2.799528 Supp     b'+1:word:Deficient'
+2.799528 Supp     b'-2:lemma:Anaerobic'
+2.786563 Supp     b'+2:lemma:iptg'
+2.718821 O        b'+1:word:ChIP-Seq'
+2.713296 O        b'lemma:chip'
+2.703351 Strain   b'+1:lemma:substr'
+2.703351 Strain   b'+1:word:substr'
+2.703351 Strain   b'-2:lemma:str'
+2.679277 O        b'postag:VBN'
+2.614364 O        b'-2:lemma:~'
+2.597408 O        b'lemma:rpob'
+2.597408 O        b'word:RpoB'
+2.536698 Gtype    b'-1:lemma:\xe2\x88\x86'
+2.536698 Gtype    b'-1:word:\xe2\x88\x86'
+2.524686 Substrain b'-2:lemma:substr'
+2.524477 O        b'lemma:b'
+2.524477 O        b'word:B'
+2.516755 Gtype    b'-2:postag:DT'
+2.488117 Gtype    b'lemma:\xce\xb4cra'
+2.483993 Gtype    b'lemma:wt'
+2.482868 Gtype    b'word:\xce\x94cra'
+2.435143 O        b'word:A'
+2.415059 O        b'lemma:a'
+2.412868 O        b'postag::'
+2.406725 Supp     b'-2:lemma:media'
+2.390251 Gtype    b'+1:lemma:type'
+2.390251 Gtype    b'+1:word:type'
+2.339888 O        b'+1:postag:RB'
+2.333432 Supp     b'lemma:no3'
+2.333432 Supp     b'word:NO3'
+2.317239 pH       b'+1:postag:CD'
+2.276706 O        b'+2:lemma:70'
+2.257460 Med      b'+2:postag:CC'
+2.243390 O        b'+2:postag:JJ'
+2.197419 Gtype    b'lemma:\xe2\x88\x86'
+2.197419 Gtype    b'word:\xe2\x88\x86'
+2.180922 Supp     b'-1:postag:CC'
+2.172831 Gtype    b'lemma:\xce\xb4fur'
+2.172831 Gtype    b'word:\xce\x94fur'
+2.143238 Supp     b'+1:lemma:\xc2\xb5m'
+2.143238 Supp     b'+1:word:\xc2\xb5M'
+2.142465 Supp     b'lemma:nacl'
+2.142465 Supp     b'word:NaCl'
+2.120502 Supp     b'-1:lemma:with'
+2.120502 Supp     b'-1:word:with'
+2.074609 O        b'+2:lemma:fructose'
+2.072246 Technique b'lemma:rnaseq'
+2.072246 Technique b'word:RNASeq'
+2.017366 O        b'+2:lemma:cra'
+1.976126 O        b'+1:postag:NNP'
+1.970655 Supp     b'-2:lemma:condition'
+1.952514 Phase    b'-2:lemma:until'
+1.949624 Supp     b'lemma:nitrate'
+1.949624 Supp     b'word:nitrate'
+1.946689 O        b'-1:word:tag'
+1.943850 Substrain b'lemma:mg1655'
+1.943850 Substrain b'word:MG1655'
+1.927111 Gtype    b'lemma:\xce\xb4soxr'
+1.927111 Gtype    b'word:\xce\x94soxR'
+1.921168 O        b'-1:lemma:media'
+1.921168 O        b'-1:word:media'
+1.878986 Supp     b'lemma:acetate'
+1.878986 Supp     b'word:acetate'
+1.874636 Supp     b'lemma:glucose'
+1.874636 Supp     b'word:glucose'
+1.872148 O        b'lemma:culture'
+1.839801 Gtype    b'lemma:pk4854'
+1.839801 Gtype    b'word:PK4854'
+1.832298 Gtype    b'lemma:flag-tag'
+1.832298 Gtype    b'-1:lemma:c-terminal'
+1.832298 Gtype    b'word:Flag-tag'
+1.832298 Gtype    b'-1:word:C-terminal'
+1.820296 O        b'lemma:harbor'
+1.820296 O        b'word:harboring'
+1.815309 O        b'-1:lemma:tag'
+1.807546 O        b'lemma:with'
+1.807546 O        b'word:with'
+1.777512 Gversion b'lemma:chip-seq'
+1.769268 O        b'isLower'
+1.765598 O        b'-2:lemma:min'
+1.763690 Gversion b'-2:lemma:build'
+1.761248 Gtype    b'+2:lemma:glucose'
+1.755584 O        b'postag:VBD'
+1.743507 O        b'lemma:Custom'
+1.743507 O        b'word:Custom'
+1.740985 Med      b'+2:lemma:b2'
+1.731020 Agit     b'+2:lemma:at'
+1.725553 O        b'+1:lemma:arca-8myc'
+1.725553 O        b'+1:word:ArcA-8myc'
+1.720146 O        b'lemma::'
+1.720146 O        b'word::'
+1.712129 Gversion b'lemma:nc'
+1.712129 Gversion b'word:NC'
+1.707341 O        b'-1:lemma:anaerobic'
+1.686115 O        b'+1:lemma:pq'
+1.686115 O        b'+1:word:PQ'
+1.678834 O        b'lemma:ompr'
+1.678834 O        b'word:OmpR'
+1.675572 Gtype    b'-2:postag::'
+1.672750 Med      b'lemma:lb'
+1.672750 Med      b'word:LB'
+1.671736 Gtype    b'+1:lemma:ph5'
+1.671736 Gtype    b'+1:word:pH5'
+1.671736 Gtype    b'+2:lemma:.5'
+1.670759 Air      b'lemma:aerobically'
+1.670759 Air      b'word:aerobically'
+1.647866 Temp     b'-2:lemma:\xcf\x8332'
+1.640244 Supp     b'lemma:rifampicin'
+1.640244 Supp     b'word:rifampicin'
+1.626253 Gversion b'word:ChIP-Seq'
+1.618940 O        b'-2:lemma:myc'
+1.612483 Temp     b'+2:postag:DT'
+1.611153 Technique b'lemma:chipseq'
+1.599912 Supp     b'-2:lemma:agent'
+1.592000 Temp     b'isNumber'
+1.587160 Agit     b'lemma:rpm'
+1.587160 Agit     b'word:rpm'
+1.581472 O        b'-2:lemma:with'
+1.569842 Temp     b'-1:lemma:\xcf\x8332'
+1.569842 Temp     b'-1:word:\xcf\x8332'
+1.563059 Gversion b'-2:postag:VB'
+1.527295 O        b'postag:DT'
+1.515816 O        b'-2:lemma:\xe2\x88\x86'
+1.507350 Vess     b'lemma:flask'
+1.507350 Vess     b'-1:lemma:warm'
+1.507350 Vess     b'word:flask'
+1.507350 Vess     b'-1:word:warmed'
+1.507350 Vess     b'-2:lemma:pre'
+1.507350 Vess     b'+2:lemma:43'
+1.506594 Gtype    b'lemma:nsrr'
+1.506594 Gtype    b'word:NsrR'
+1.504503 Gtype    b'lemma:\xce\xb4ompr'
+1.504503 Gtype    b'word:\xce\x94ompR'
+1.503447 O        b'+2:lemma:polyclonal'
+1.495379 O        b'-1:lemma:lb'
+1.495379 O        b'-1:word:LB'
+1.491679 Gtype    b'-1:postag:VBG'
+1.487841 Med      b'isUpper'
+1.483957 Gtype    b'lemma:dfnr'
+1.483957 Gtype    b'word:dFNR'
+1.474477 Technique b'+2:lemma:ph5'
+1.473390 Gversion b'+2:lemma:000913'
+1.470703 O        b'+1:lemma:mid-log'
+1.470703 O        b'+1:word:mid-log'
+1.470599 Med      b'+2:lemma:+'
+1.469928 Supp     b'-2:lemma:for'
+
+
+Top negative:
+-0.126187 Supp     b'-2:lemma:.'
+-0.126187 Supp     b'-2:postag:.'
+-0.127621 Med      b'+1:postag:IN'
+-0.130732 O        b'-2:lemma:dpd'
+-0.132134 Technique b'postag:NN'
+-0.132995 Air      b'-2:postag:RB'
+-0.133944 O        b'-2:lemma:mm'
+-0.135455 O        b'-2:lemma:pahse'
+-0.136661 O        b'lemma:37'
+-0.136661 O        b'word:37'
+-0.140067 OD       b'+2:postag:NN'
+-0.140101 Supp     b'+2:lemma:.'
+-0.140101 Supp     b'+2:postag:.'
+-0.140302 O        b'-2:lemma:-lrb-'
+-0.141434 Supp     b'-1:postag:-LRB-'
+-0.141915 Air      b'+1:postag:JJ'
+-0.144090 O        b'-1:lemma:fresh'
+-0.144090 O        b'-1:word:fresh'
+-0.153079 Supp     b'+2:postag:NNP'
+-0.166309 Supp     b'+1:postag:VBN'
+-0.166863 O        b'+1:postag:-LRB-'
+-0.175325 Phase    b'-2:postag:NN'
+-0.178557 O        b'+1:lemma:mm'
+-0.178557 O        b'+1:word:mM'
+-0.179047 Supp     b'lemma:10'
+-0.179047 Supp     b'word:10'
+-0.181748 O        b'-2:lemma:minimal'
+-0.181863 O        b'-1:word:the'
+-0.183178 O        b'-1:lemma:of'
+-0.183178 O        b'-1:word:of'
+-0.189370 Air      b'+2:postag:CC'
+-0.193112 O        b'lemma:wt'
+-0.194128 O        b'-1:lemma:the'
+-0.194149 O        b'-1:lemma:at'
+-0.202859 Temp     b'isLower'
+-0.206499 O        b'+2:postag:RB'
+-0.211728 O        b'-2:lemma:media'
+-0.217752 Supp     b'-2:lemma:treat'
+-0.226935 Med      b'+1:postag:NN'
+-0.228587 Phase    b'+1:postag:NN'
+-0.230504 O        b'-1:postag:DT'
+-0.231712 Temp     b'-2:postag:NN'
+-0.235534 Air      b'-2:postag:CC'
+-0.237756 Air      b'-2:postag:-LRB-'
+-0.239368 O        b'-2:postag:-LRB-'
+-0.243864 O        b'+1:lemma:g/l'
+-0.243864 O        b'+1:word:g/L'
+-0.244939 O        b'lemma:aerobically'
+-0.244939 O        b'word:aerobically'
+-0.253096 O        b'-2:lemma:fresh'
+-0.263628 O        b'-1:postag:IN'
+-0.268765 Supp     b'+1:lemma:-lrb-'
+-0.268765 Supp     b'+1:word:-LRB-'
+-0.269581 OD       b'isUpper'
+-0.271938 O        b'+1:lemma:supplement'
+-0.271938 O        b'+1:word:supplemented'
+-0.279427 Anti     b'+2:postag:JJ'
+-0.282509 Air      b'-2:lemma:-lrb-'
+-0.282587 Supp     b'+1:lemma:,'
+-0.282587 Supp     b'+1:postag:,'
+-0.282587 Supp     b'+1:word:,'
+-0.290826 Supp     b'+1:postag:-LRB-'
+-0.298496 O        b'-2:lemma:supplement'
+-0.301952 O        b'-2:lemma:at'
+-0.302829 O        b'+2:lemma:add'
+-0.310606 O        b'+1:lemma:.'
+-0.310606 O        b'+1:postag:.'
+-0.310606 O        b'+1:word:.'
+-0.313003 O        b'-1:lemma:co2'
+-0.313003 O        b'-1:word:CO2'
+-0.317690 O        b'-1:lemma:dissolve'
+-0.317690 O        b'+1:lemma:methanol'
+-0.317690 O        b'-1:word:dissolved'
+-0.317690 O        b'+1:word:methanol'
+-0.326174 O        b'-1:lemma:minimal'
+-0.326174 O        b'-1:word:minimal'
+-0.326216 O        b'-1:lemma:IP'
+-0.326216 O        b'-1:word:IP'
+-0.326756 Med      b'-1:postag:NN'
+-0.330968 O        b'-1:lemma:2'
+-0.330968 O        b'-1:word:2'
+-0.331123 Supp     b'isNumber'
+-0.331144 O        b'+2:lemma:fnr'
+-0.342326 Med      b'+2:postag:VBN'
+-0.348597 O        b'-2:lemma:glucose'
+-0.349154 O        b'-2:lemma:until'
+-0.353909 O        b'+1:lemma:1m'
+-0.353909 O        b'+1:word:1M'
+-0.353909 O        b'-2:lemma:vol'
+-0.354844 O        b'lemma:media'
+-0.354844 O        b'word:media'
+-0.364311 O        b'+2:lemma:a'
+-0.368051 O        b'lemma:nitrate'
+-0.368051 O        b'word:nitrate'
+-0.369958 Air      b'-2:lemma:and'
+-0.370055 O        b'-2:lemma:aerobically'
+-0.371442 O        b'-1:lemma:mm'
+-0.371442 O        b'-1:word:mM'
+-0.377685 O        b'+2:lemma:10'
+-0.378127 Supp     b'postag:CC'
+-0.381117 O        b'+2:lemma:at'
+-0.389688 pH       b'isLower'
+-0.391439 O        b'+2:lemma:-rrb-'
+-0.401482 O        b'-2:lemma:anaerobically'
+-0.403860 Air      b'-1:postag:RB'
+-0.405233 O        b'lemma:2h'
+-0.405233 O        b'-1:lemma:additional'
+-0.405233 O        b'word:2h'
+-0.405233 O        b'-1:word:additional'
+-0.407301 O        b'-1:lemma:grow'
+-0.410353 O        b'lemma:minimal'
+-0.410353 O        b'word:minimal'
+-0.415960 O        b'lemma:anaerobically'
+-0.415960 O        b'word:anaerobically'
+-0.431864 O        b'+2:lemma:rifampicin'
+-0.435994 Gtype    b'+2:lemma:cra'
+-0.448208 O        b'+2:lemma:.'
+-0.448208 O        b'+2:postag:.'
+-0.457862 O        b'-1:lemma:ph'
+-0.457862 O        b'-1:word:pH'
+-0.462522 O        b'lemma:mid-log'
+-0.462522 O        b'word:mid-log'
+-0.464717 O        b'-1:postag::'
+-0.478899 Gtype    b'postag:VBG'
+-0.480305 O        b'+2:postag:-RRB-'
+-0.486380 Supp     b'-1:postag:NNP'
+-0.487200 pH       b'postag:NN'
+-0.487808 O        b'+2:lemma:+'
+-0.495639 Air      b'-1:postag:JJ'
+-0.498421 Phase    b'isUpper'
+-0.501538 O        b'+1:lemma:until'
+-0.501538 O        b'+1:word:until'
+-0.508531 O        b'-1:lemma:nsrr'
+-0.508531 O        b'-1:word:NsrR'
+-0.515487 O        b'-2:lemma:phase'
+-0.515810 O        b'-1:lemma:30'
+-0.515810 O        b'-1:word:30'
+-0.523969 Med      b'-2:postag:VBN'
+-0.536049 Technique b'isNumber'
+-0.539654 O        b'lemma:of'
+-0.539654 O        b'word:of'
+-0.555532 Supp     b'-2:postag:JJ'
+-0.605271 O        b'postag:VBP'
+-0.607462 O        b'-1:lemma:1'
+-0.607462 O        b'-1:word:1'
+-0.610401 O        b'lemma:0.3'
+-0.610401 O        b'word:0.3'
+-0.654660 O        b'+1:lemma:in'
+-0.654660 O        b'+1:word:in'
+-0.674407 Anti     b'isUpper'
+-0.680937 Air      b'postag:NN'
+-0.683120 O        b'+1:postag:IN'
+-0.694831 O        b'-2:lemma::'
+-0.711579 O        b'+2:lemma:mid-log'
+-0.717061 O        b'postag:RB'
+-0.727172 O        b'+1:lemma:2.0'
+-0.727172 O        b'+1:word:2.0'
+-0.727991 O        b'+1:lemma:at'
+-0.727991 O        b'+1:word:at'
+-0.750617 Gtype    b'isNumber'
+-0.754171 O        b'-1:lemma:vol'
+-0.754171 O        b'-1:word:vol'
+-0.754171 O        b'-2:lemma:1/100'
+-0.754171 O        b'+2:lemma:1m'
+-0.769142 Gversion b'isLower'
+-0.799722 O        b'lemma:rifampicin'
+-0.799722 O        b'word:rifampicin'
+-0.813037 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.818783 O        b'lemma:30'
+-0.818783 O        b'word:30'
+-0.832669 Technique b'isLower'
+-0.884252 O        b'+1:postag:VBG'
+-0.887424 O        b'-2:postag:DT'
+-0.937669 O        b'-2:lemma:0.3'
+-0.940717 Supp     b'+2:lemma:fructose'
+-0.972116 Supp     b'+2:postag:CD'
+-0.978709 Gtype    b'isLower'
+-1.016999 O        b'-2:lemma:rifampicin'
+-1.111059 Agit     b'isUpper'
+-1.130478 O        b'-2:postag:RB'
+-1.171981 O        b'+2:lemma:then'
+-1.242037 Phase    b'postag:JJ'
+-1.330863 O        b'+1:lemma:1'
+-1.330863 O        b'+1:word:1'
+-1.365191 Temp     b'postag:NN'
+-1.474036 Supp     b'postag:JJ'
+-1.619405 Phase    b'-1:postag:JJ'
+-1.653492 Supp     b'+2:lemma:1'
+-1.660082 O        b'+1:lemma:2'
+-1.660082 O        b'+1:word:2'
+-1.959474 O        b'-1:postag:VBG'
+-2.021801 Supp     b'+2:lemma:2'
+-2.109223 Med      b'-2:lemma:grow'
+-2.312172 OD       b'+1:postag:NN'
+-2.414666 O        b'-1:lemma::'
+-2.414666 O        b'-1:word::'
+-2.754541 O        b'-1:lemma:_'
+-2.754541 O        b'-1:word:_'
+-3.657725 OD       b'+2:lemma:aerobically'
+-4.070887 Anti     b'postag:NNP'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.03780171336875179, 'c2': 0.012718090480016972}
+best CV score:0.8741870589668248
+model size: 0.16M
+
+Flat F1: 0.764435455440298
+             precision    recall  f1-score   support
+
+         OD      0.818     0.818     0.818        22
+         pH      1.000     1.000     1.000         8
+  Technique      0.955     0.913     0.933        23
+        Med      1.000     0.925     0.961        53
+       Temp      1.000     0.759     0.863        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.869     0.859     0.864        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.593     0.806     0.684       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.769     0.778     0.764       451
+
+
+Top likely transitions:
+Temp   -> Temp    5.633437
+Agit   -> Agit    5.242920
+Med    -> Med     5.205888
+OD     -> OD      4.820634
+Supp   -> Supp    4.795672
+Anti   -> Anti    4.563286
+Gversion -> Gversion 4.480777
+Gtype  -> Gtype   4.410238
+O      -> O       4.309533
+Phase  -> Phase   4.099270
+Air    -> Air     3.591014
+Technique -> Technique 3.585887
+pH     -> pH      2.997587
+Substrain -> Gtype   1.829751
+O      -> Technique 0.949969
+Gtype  -> Supp    0.738864
+O      -> Gtype   0.585802
+Gtype  -> Air     0.391269
+Gtype  -> pH      0.344184
+Technique -> Air     0.264778
+O      -> Supp    0.191022
+Air    -> O       0.116016
+Temp   -> O       0.097547
+Med    -> O       0.057304
+O      -> Anti    0.017577
+pH     -> Supp    -0.028693
+O      -> Phase   -0.048549
+Technique -> OD      -0.055283
+Anti   -> Med     -0.056104
+Supp   -> O       -0.109106
+Air    -> Temp    -0.113829
+OD     -> Supp    -0.116904
+Gversion -> Supp    -0.118460
+Technique -> Supp    -0.137571
+Air    -> OD      -0.151166
+Agit   -> O       -0.182410
+Air    -> Gtype   -0.230985
+Supp   -> Gtype   -0.235813
+Med    -> Air     -0.245332
+Phase  -> O       -0.254973
+Supp   -> Phase   -0.254988
+Phase  -> Air     -0.262541
+OD     -> O       -0.278938
+Anti   -> O       -0.285405
+Air    -> Phase   -0.291613
+Gtype  -> Technique -0.321912
+Anti   -> Supp    -0.329510
+O      -> OD      -0.360061
+Gtype  -> Anti    -0.380808
+Gtype  -> Med     -0.399195
+
+
+Top unlikely transitions:
+Gtype  -> pH      0.344184
+Technique -> Air     0.264778
+O      -> Supp    0.191022
+Air    -> O       0.116016
+Temp   -> O       0.097547
+Med    -> O       0.057304
+O      -> Anti    0.017577
+pH     -> Supp    -0.028693
+O      -> Phase   -0.048549
+Technique -> OD      -0.055283
+Anti   -> Med     -0.056104
+Supp   -> O       -0.109106
+Air    -> Temp    -0.113829
+OD     -> Supp    -0.116904
+Gversion -> Supp    -0.118460
+Technique -> Supp    -0.137571
+Air    -> OD      -0.151166
+Agit   -> O       -0.182410
+Air    -> Gtype   -0.230985
+Supp   -> Gtype   -0.235813
+Med    -> Air     -0.245332
+Phase  -> O       -0.254973
+Supp   -> Phase   -0.254988
+Phase  -> Air     -0.262541
+OD     -> O       -0.278938
+Anti   -> O       -0.285405
+Air    -> Phase   -0.291613
+Gtype  -> Technique -0.321912
+Anti   -> Supp    -0.329510
+O      -> OD      -0.360061
+Gtype  -> Anti    -0.380808
+Gtype  -> Med     -0.399195
+Supp   -> Air     -0.399750
+O      -> Med     -0.419285
+Phase  -> OD      -0.436501
+Air    -> Agit    -0.455472
+Technique -> O       -0.530788
+Temp   -> Med     -0.544192
+Technique -> pH      -0.577493
+Supp   -> Med     -0.646950
+OD     -> Air     -0.730559
+Phase  -> Supp    -0.748627
+Air    -> Med     -0.810512
+Gtype  -> O       -0.913442
+Air    -> Supp    -0.986614
+Agit   -> Air     -1.033744
+O      -> Air     -1.071275
+Substrain -> O       -1.325541
+Technique -> Gtype   -1.554985
+Med    -> Supp    -2.340793
+
+
+Top positive:
+5.181623 Air      b'word:Aerobic'
+5.069692 O        b'-2:lemma:_'
+4.702830 Anti     b'-2:lemma:antibody'
+4.290692 Air      b'lemma:anaerobic'
+4.139968 Gtype    b'-2:lemma:genotype/variation'
+4.052057 O        b'word:Cra'
+3.610352 Technique b'word:ChIP-Seq'
+3.589676 O        b'lemma:_'
+3.589676 O        b'word:_'
+3.543264 O        b'lemma:1'
+3.543264 O        b'word:1'
+3.538307 O        b'lemma:2'
+3.538307 O        b'word:2'
+3.447474 Gtype    b'-2:lemma:genotype'
+3.421203 Air      b'postag:RB'
+3.390076 Phase    b'-2:lemma:phase'
+3.349265 Supp     b'lemma:pq'
+3.349265 Supp     b'word:PQ'
+3.332208 O        b'-2:lemma:medium'
+3.230628 O        b'-1:lemma:ChIP-exo'
+3.167256 Technique b'lemma:rna-seq'
+3.159409 O        b'-2:lemma:flagtag'
+3.114586 Technique b'word:ChIP-exo'
+3.101194 Technique b'lemma:ChIP-exo'
+2.986312 Supp     b'lemma:nh4cl'
+2.980962 Technique b'word:ChIPSeq'
+2.961365 Gtype    b'lemma:type'
+2.961365 Gtype    b'word:type'
+2.960004 Air      b'word:Anaerobic'
+2.947966 Gtype    b'word:WT'
+2.932783 O        b'+2:lemma:\xc2\xb0c'
+2.920653 Supp     b'+2:lemma:iptg'
+2.872474 O        b'lemma:.'
+2.872474 O        b'postag:.'
+2.872474 O        b'word:.'
+2.867743 Gtype    b'lemma:wild-type'
+2.834804 Supp     b'-1:word:Cra'
+2.831538 O        b'lemma:-'
+2.831538 O        b'word:-'
+2.798161 O        b'lemma:3'
+2.798161 O        b'word:3'
+2.798112 Gtype    b'-2:lemma:affyexp'
+2.692314 O        b'lemma:rpob'
+2.692314 O        b'word:RpoB'
+2.675098 O        b'postag::'
+2.664980 Gtype    b'lemma:wt'
+2.604579 Gtype    b'lemma:\xce\xb4cra'
+2.592394 O        b'postag:VBN'
+2.550258 Supp     b'lemma:no3'
+2.550258 Supp     b'word:NO3'
+2.533320 Gtype    b'word:\xce\x94cra'
+2.500008 Technique b'lemma:chipseq'
+2.463493 Med      b'lemma:MOPS'
+2.463493 Med      b'word:MOPS'
+2.459381 O        b'+2:lemma:70'
+2.452341 Supp     b'lemma:Iron'
+2.452341 Supp     b'word:Iron'
+2.452341 Supp     b'+1:word:Deficient'
+2.452341 Supp     b'-2:lemma:Anaerobic'
+2.449771 Med      b'+2:postag:CC'
+2.435165 Phase    b'+2:lemma:o.d.'
+2.430391 O        b'-1:lemma:tag'
+2.425850 Phase    b'lemma:mid-log'
+2.425850 Phase    b'word:mid-log'
+2.407993 O        b'postag:IN'
+2.398217 Phase    b'lemma:exponential'
+2.398217 Phase    b'word:exponential'
+2.398217 Phase    b'lemma:stationary'
+2.398217 Phase    b'word:stationary'
+2.392837 Supp     b'lemma:acetate'
+2.392837 Supp     b'word:acetate'
+2.385444 Gtype    b'+1:lemma:type'
+2.385444 Gtype    b'+1:word:type'
+2.380980 Anti     b'+2:lemma:antibody'
+2.369810 Supp     b'-2:lemma:agent'
+2.356829 O        b'word:A'
+2.351468 Med      b'+2:lemma:b2'
+2.300790 Supp     b'lemma:arginine'
+2.298306 Supp     b'lemma:nacl'
+2.298306 Supp     b'word:NaCl'
+2.295477 O        b'+1:postag:NNP'
+2.243176 O        b'-1:word:Aerobic'
+2.239344 Air      b'lemma:Aerobic'
+2.178927 O        b'lemma:b'
+2.178927 O        b'word:B'
+2.167680 Gtype    b'lemma:\xe2\x88\x86'
+2.167680 Gtype    b'word:\xe2\x88\x86'
+2.163673 Supp     b'lemma:glucose'
+2.163673 Supp     b'word:glucose'
+2.149402 Technique b'+2:lemma:ph5'
+2.131320 O        b'lemma:with'
+2.131320 O        b'word:with'
+2.107004 Substrain b'lemma:mg1655'
+2.107004 Substrain b'word:MG1655'
+2.093423 O        b'+2:lemma:fructose'
+2.092930 Supp     b'-1:lemma:with'
+2.092930 Supp     b'-1:word:with'
+2.072607 Supp     b'-1:lemma:Cra'
+2.061502 O        b'+1:word:ChIP-Seq'
+2.048739 O        b'lemma:ompr'
+2.048739 O        b'word:OmpR'
+2.041804 O        b'lemma:culture'
+2.035926 Gtype    b'-2:postag:DT'
+2.033981 Substrain b'-2:lemma:substr'
+2.015820 Gtype    b'lemma:\xce\xb4soxr'
+2.015820 Gtype    b'word:\xce\x94soxR'
+2.002657 Gtype    b'lemma:flag-tag'
+2.002657 Gtype    b'-1:lemma:c-terminal'
+2.002657 Gtype    b'word:Flag-tag'
+2.002657 Gtype    b'-1:word:C-terminal'
+1.981109 Supp     b'+1:lemma:\xc2\xb5m'
+1.981109 Supp     b'+1:word:\xc2\xb5M'
+1.977275 O        b'+2:lemma:cra'
+1.976163 Strain   b'+1:lemma:substr'
+1.976163 Strain   b'+1:word:substr'
+1.976163 Strain   b'-2:lemma:str'
+1.966819 Technique b'lemma:rnaseq'
+1.966819 Technique b'word:RNASeq'
+1.966131 O        b'-2:lemma:myc'
+1.956221 O        b'lemma:harbor'
+1.956221 O        b'word:harboring'
+1.947790 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.947790 Gtype    b'-1:word:\xe2\x88\x86'
+1.943715 O        b'-1:lemma:lb'
+1.943715 O        b'-1:word:LB'
+1.942277 O        b'lemma:a'
+1.929064 Gversion b'lemma:chip-seq'
+1.918408 Technique b'word:RNA-Seq'
+1.915726 pH       b'+1:postag:CD'
+1.882795 O        b'+1:lemma:arca-8myc'
+1.882795 O        b'+1:word:ArcA-8myc'
+1.881377 O        b'-2:lemma:fructose'
+1.853522 O        b'+1:postag:RB'
+1.851023 Supp     b'postag:VBP'
+1.845767 Supp     b'-2:lemma:induce'
+1.833461 Gtype    b'lemma:\xce\xb4fur'
+1.833461 Gtype    b'word:\xce\x94fur'
+1.825330 Gversion b'word:ChIP-Seq'
+1.815756 O        b'-1:lemma:glucose'
+1.815756 O        b'-1:word:glucose'
+1.815639 Gtype    b'+1:lemma:with'
+1.815639 Gtype    b'+1:word:with'
+1.809036 Gtype    b'-2:lemma:delta'
+1.806217 Technique b'-1:lemma:chip-exo'
+1.804393 Temp     b'isNumber'
+1.797896 O        b'-1:word:tag'
+1.786674 Supp     b'-2:lemma:purr'
+1.783032 Supp     b'-2:lemma:argr'
+1.765681 O        b'+2:postag:JJ'
+1.765181 Supp     b'-1:postag:CC'
+1.753024 Air      b'word:anaerobic'
+1.751122 Gtype    b'-1:postag:VBG'
+1.742490 Supp     b'-2:lemma:media'
+1.737277 Med      b'+2:lemma:b1'
+1.734728 O        b'+2:lemma:_'
+1.710506 Gtype    b'+2:lemma:glucose'
+1.709022 Supp     b'lemma:Leu'
+1.709022 Supp     b'word:Leu'
+1.709022 Supp     b'-2:lemma:Lrp'
+1.707829 Supp     b'-2:lemma:condition'
+1.695253 Gtype    b'lemma:\xce\xb4ompr'
+1.695253 Gtype    b'word:\xce\x94ompR'
+1.687283 Med      b'+1:lemma:0.4'
+1.687283 Med      b'+1:word:0.4'
+1.680612 Air      b'+1:postag:IN'
+1.676466 O        b'lemma:soxs'
+1.676466 O        b'word:SoxS'
+1.676466 O        b'lemma:soxr'
+1.676466 O        b'word:SoxR'
+1.666118 O        b'lemma:Cra'
+1.639338 O        b'-1:lemma:anaerobic'
+1.636477 O        b'isLower'
+1.632852 Med      b'lemma:media'
+1.632852 Med      b'word:media'
+1.629462 O        b'-2:lemma:treat'
+1.626732 Gtype    b'lemma:dfnr'
+1.626732 Gtype    b'word:dFNR'
+1.623468 O        b'lemma:Custom'
+1.623468 O        b'word:Custom'
+1.621644 O        b'postag:CC'
+1.618806 Gtype    b'lemma:\xce\xb4oxyr'
+1.618806 Gtype    b'word:\xce\x94oxyR'
+1.618168 Med      b'lemma:lb'
+1.618168 Med      b'word:LB'
+1.618066 O        b'-1:lemma:media'
+1.618066 O        b'-1:word:media'
+1.611062 Gtype    b'postag:JJ'
+1.608968 O        b'lemma:argr'
+1.608968 O        b'word:ArgR'
+1.603897 Gversion b'-2:lemma:nc'
+1.594090 O        b'lemma:trpr'
+1.594090 O        b'word:TrpR'
+1.583791 Air      b'lemma:aerobic'
+1.567884 O        b'+1:postag:VBP'
+1.567340 O        b'-1:lemma:0.3'
+1.567340 O        b'-1:word:0.3'
+1.561344 O        b'lemma::'
+1.561344 O        b'word::'
+1.560411 O        b'lemma:rep2'
+1.560411 O        b'word:rep2'
+
+
+Top negative:
+-0.317190 OD       b'+2:postag:NN'
+-0.317236 O        b'-2:postag::'
+-0.319090 O        b'+1:lemma:2.0'
+-0.319090 O        b'+1:word:2.0'
+-0.319182 O        b'+2:lemma:30'
+-0.325633 O        b'lemma:nh4cl'
+-0.326977 Temp     b'+1:postag:IN'
+-0.328963 O        b'lemma:methanol'
+-0.328963 O        b'word:methanol'
+-0.328963 O        b'-2:lemma:dissolve'
+-0.330771 O        b'-1:lemma:rpob'
+-0.330771 O        b'-1:word:RpoB'
+-0.332385 Supp     b'+2:lemma:acetate'
+-0.336346 O        b'+2:lemma:reference'
+-0.340150 Strain   b'isLower'
+-0.351888 Phase    b'+2:postag:NN'
+-0.354760 O        b'-1:lemma:ph'
+-0.354760 O        b'-1:word:pH'
+-0.356359 O        b'word:tag'
+-0.356948 O        b'-1:lemma:dissolve'
+-0.356948 O        b'+1:lemma:methanol'
+-0.356948 O        b'-1:word:dissolved'
+-0.356948 O        b'+1:word:methanol'
+-0.360165 O        b'lemma:aerobic'
+-0.361875 O        b'-1:lemma:2'
+-0.361875 O        b'-1:word:2'
+-0.364393 O        b'lemma:medium'
+-0.364393 O        b'word:medium'
+-0.364434 O        b'lemma:anaerobic'
+-0.365818 O        b'-1:lemma:co2'
+-0.365818 O        b'-1:word:CO2'
+-0.372268 O        b'-1:lemma:\xe2\x88\x86'
+-0.372268 O        b'-1:word:\xe2\x88\x86'
+-0.380490 Temp     b'isLower'
+-0.386775 O        b'+1:lemma:1m'
+-0.386775 O        b'+1:word:1M'
+-0.386775 O        b'-2:lemma:vol'
+-0.390297 Supp     b'-2:lemma:.'
+-0.390297 Supp     b'-2:postag:.'
+-0.405236 O        b'+2:lemma:fnr'
+-0.408221 O        b'+2:lemma:mid-log'
+-0.413792 O        b'lemma:fructose'
+-0.413792 O        b'word:fructose'
+-0.413863 Temp     b'-2:postag:NN'
+-0.414885 O        b'-1:postag::'
+-0.422156 O        b'+1:lemma:+'
+-0.422156 O        b'+1:word:+'
+-0.427210 O        b'-1:lemma:37'
+-0.427210 O        b'-1:word:37'
+-0.429642 Supp     b'+1:lemma:,'
+-0.429642 Supp     b'+1:postag:,'
+-0.429642 Supp     b'+1:word:,'
+-0.434934 O        b'lemma:37'
+-0.434934 O        b'word:37'
+-0.449375 O        b'word:ChIP-exo'
+-0.453085 pH       b'isUpper'
+-0.454154 O        b'-2:lemma:IP'
+-0.455382 Temp     b'+2:postag:IN'
+-0.460059 Air      b'+1:postag:JJ'
+-0.464417 O        b'-1:lemma:mm'
+-0.464417 O        b'-1:word:mM'
+-0.467555 O        b'+2:lemma:at'
+-0.467980 O        b'lemma:anaerobically'
+-0.467980 O        b'word:anaerobically'
+-0.470071 O        b'-2:lemma:control'
+-0.471057 O        b'+2:lemma:add'
+-0.480066 O        b'+1:postag:IN'
+-0.484390 O        b'lemma:of'
+-0.484390 O        b'word:of'
+-0.485748 O        b'lemma:aerobically'
+-0.485748 O        b'word:aerobically'
+-0.496119 O        b'-2:lemma:pahse'
+-0.501405 O        b'-2:lemma:genome'
+-0.513871 O        b'-2:postag:RB'
+-0.528240 O        b'-2:postag:DT'
+-0.554221 O        b'-1:lemma:ml'
+-0.554221 O        b'-1:word:ml'
+-0.555233 O        b'lemma:nitrogen'
+-0.555233 O        b'word:nitrogen'
+-0.557362 O        b'lemma:2h'
+-0.557362 O        b'-1:lemma:additional'
+-0.557362 O        b'word:2h'
+-0.557362 O        b'-1:word:additional'
+-0.574744 O        b'+1:postag:VBG'
+-0.577749 Supp     b'+1:lemma:-lrb-'
+-0.577749 Supp     b'+1:word:-LRB-'
+-0.584147 O        b'-2:lemma:glucose'
+-0.589012 O        b'+1:lemma:g/l'
+-0.589012 O        b'+1:word:g/L'
+-0.592857 O        b'lemma:glucose'
+-0.592857 O        b'word:glucose'
+-0.601655 O        b'-1:lemma:fresh'
+-0.601655 O        b'-1:word:fresh'
+-0.603478 Supp     b'+1:postag:-LRB-'
+-0.621366 O        b'+1:lemma:in'
+-0.621366 O        b'+1:word:in'
+-0.622465 O        b'-1:lemma:30'
+-0.622465 O        b'-1:word:30'
+-0.622636 Supp     b'-1:postag:NNP'
+-0.623045 Temp     b'postag:NN'
+-0.628719 O        b'-2:lemma:minimal'
+-0.629272 O        b'+2:lemma:250'
+-0.632193 Supp     b'+1:postag:NNS'
+-0.632244 O        b'-2:lemma:nh4cl'
+-0.639178 O        b'+1:word:ChIP-exo'
+-0.641094 Anti     b'+1:lemma:anti-fur'
+-0.641094 Anti     b'+1:word:anti-Fur'
+-0.652774 Supp     b'postag:CC'
+-0.659478 Agit     b'isUpper'
+-0.660753 O        b'-2:lemma:rpob'
+-0.662803 O        b'+1:lemma:until'
+-0.662803 O        b'+1:word:until'
+-0.684151 O        b'-2:postag:SYM'
+-0.701908 O        b'lemma:0.3'
+-0.701908 O        b'word:0.3'
+-0.708244 O        b'-2:lemma:aerobically'
+-0.717945 pH       b'isLower'
+-0.724124 O        b'-1:lemma:1'
+-0.724124 O        b'-1:word:1'
+-0.748149 O        b'lemma:media'
+-0.748149 O        b'word:media'
+-0.748561 O        b'-2:lemma:fresh'
+-0.766386 O        b'-2:lemma:anaerobically'
+-0.773055 O        b'-1:lemma:nsrr'
+-0.773055 O        b'-1:word:NsrR'
+-0.780146 O        b'lemma:\xce\xb4fur'
+-0.780146 O        b'word:\xce\x94fur'
+-0.780683 O        b'-1:lemma:grow'
+-0.793481 Supp     b'+2:postag:CD'
+-0.793996 Supp     b'+2:lemma:glucose'
+-0.802497 Phase    b'isUpper'
+-0.818377 O        b'+2:lemma:b'
+-0.827115 O        b'lemma:nitrate'
+-0.827115 O        b'word:nitrate'
+-0.842837 O        b'-2:lemma:dpd'
+-0.844530 Anti     b'isUpper'
+-0.848235 O        b'lemma:wt'
+-0.848520 Supp     b'-2:lemma:treat'
+-0.856415 O        b'-1:lemma:chip-exo'
+-0.857668 O        b'-2:lemma:rifampicin'
+-0.870943 Med      b'-2:postag:VBN'
+-0.880457 Med      b'-1:postag:NN'
+-0.892873 Supp     b'-2:postag:JJ'
+-0.904754 O        b'+1:lemma:at'
+-0.904754 O        b'+1:word:at'
+-0.911903 Med      b'+2:postag:VBN'
+-0.952984 Air      b'postag:NN'
+-0.961352 Technique b'isNumber'
+-0.969534 O        b'lemma:rifampicin'
+-0.969534 O        b'word:rifampicin'
+-0.972230 Gtype    b'isNumber'
+-0.979689 O        b'-1:lemma:vol'
+-0.979689 O        b'-1:word:vol'
+-0.979689 O        b'-2:lemma:1/100'
+-0.979689 O        b'+2:lemma:1m'
+-0.994381 O        b'lemma:mid-log'
+-0.994381 O        b'word:mid-log'
+-0.998905 O        b'-1:lemma:IP'
+-0.998905 O        b'-1:word:IP'
+-1.010402 O        b'-1:lemma:sample'
+-1.039200 O        b'+2:lemma:then'
+-1.063285 Supp     b'-2:lemma:grow'
+-1.070057 Gversion b'isLower'
+-1.088636 O        b'-2:lemma::'
+-1.111068 O        b'+2:lemma:rifampicin'
+-1.141806 O        b'lemma:30'
+-1.141806 O        b'word:30'
+-1.155863 Gtype    b'isLower'
+-1.158383 O        b'-2:lemma:media'
+-1.163155 Gtype    b'-2:lemma:\xe2\x88\x86'
+-1.183034 O        b'-2:lemma:phase'
+-1.187663 O        b'-2:lemma:until'
+-1.205548 O        b'+2:lemma:+'
+-1.219191 Technique b'isLower'
+-1.223177 O        b'postag:RB'
+-1.253855 OD       b'+1:postag:NN'
+-1.256714 O        b'+1:lemma:1'
+-1.256714 O        b'+1:word:1'
+-1.263687 Anti     b'+2:lemma:polyclonal'
+-1.291590 O        b'+2:lemma:for'
+-1.317736 Gtype    b'+2:lemma:cra'
+-1.346822 Supp     b'postag:JJ'
+-1.369654 Gtype    b'postag:VBG'
+-1.433422 O        b'postag:VBP'
+-1.476722 O        b'+1:lemma:2'
+-1.476722 O        b'+1:word:2'
+-1.525519 O        b'-2:lemma:0.3'
+-1.666455 Supp     b'+2:lemma:1'
+-1.826364 Med      b'-2:lemma:grow'
+-1.900619 Phase    b'-1:postag:JJ'
+-1.925903 Supp     b'+2:lemma:2'
+-2.114791 O        b'-1:postag:VBG'
+-2.153462 Supp     b'+2:lemma:fructose'
+-2.237029 Anti     b'postag:NNP'
+-2.314282 O        b'-1:lemma::'
+-2.314282 O        b'-1:word::'
+-2.363285 O        b'-1:lemma:_'
+-2.363285 O        b'-1:word:_'
+-2.770952 OD       b'+2:lemma:aerobically'
+-3.794024 Phase    b'postag:JJ'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.16987113834357556, 'c2': 0.04496913983225195}
+best CV score:0.8747625195626942
+model size: 0.13M
+
+Flat F1: 0.7884082577489101
+             precision    recall  f1-score   support
+
+         OD      0.818     0.818     0.818        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     1.000     1.000        23
+        Med      1.000     0.962     0.981        53
+       Temp      0.923     0.828     0.873        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.875     0.933     0.903        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.864     0.824     0.843        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.712     0.813     0.760       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.801     0.785     0.788       451
+
+
+Top likely transitions:
+OD     -> OD      5.257890
+Temp   -> Temp    5.205804
+Med    -> Med     4.966902
+Supp   -> Supp    4.928476
+Agit   -> Agit    4.916983
+Anti   -> Anti    4.149202
+Air    -> Air     3.992915
+Gversion -> Gversion 3.819753
+Gtype  -> Gtype   3.718805
+Phase  -> Phase   3.610359
+O      -> O       3.452915
+Technique -> Technique 3.113366
+pH     -> pH      2.349939
+Substrain -> Gtype   0.775262
+O      -> Technique 0.770450
+O      -> Supp    0.669913
+Air    -> O       0.473830
+Gtype  -> Supp    0.462636
+O      -> Gtype   0.453324
+Supp   -> O       0.311331
+Med    -> O       0.264436
+Gtype  -> Air     0.183444
+Temp   -> O       0.158941
+Technique -> Air     0.108884
+O      -> Phase   0.000506
+Air    -> Supp    -0.000185
+Supp   -> Gtype   -0.002878
+O      -> OD      -0.009866
+Supp   -> Technique -0.043400
+Technique -> Gtype   -0.047071
+Anti   -> O       -0.051496
+Gtype  -> Anti    -0.117353
+O      -> Med     -0.118983
+Technique -> pH      -0.211980
+OD     -> Air     -0.228543
+Gversion -> O       -0.264567
+Gtype  -> Med     -0.386243
+Supp   -> Med     -0.413936
+Gtype  -> Technique -0.493289
+O      -> Air     -0.579308
+Technique -> O       -0.694824
+Gtype  -> O       -0.998730
+Med    -> Supp    -1.066796
+Substrain -> O       -1.093891
+
+
+Top unlikely transitions:
+OD     -> OD      5.257890
+Temp   -> Temp    5.205804
+Med    -> Med     4.966902
+Supp   -> Supp    4.928476
+Agit   -> Agit    4.916983
+Anti   -> Anti    4.149202
+Air    -> Air     3.992915
+Gversion -> Gversion 3.819753
+Gtype  -> Gtype   3.718805
+Phase  -> Phase   3.610359
+O      -> O       3.452915
+Technique -> Technique 3.113366
+pH     -> pH      2.349939
+Substrain -> Gtype   0.775262
+O      -> Technique 0.770450
+O      -> Supp    0.669913
+Air    -> O       0.473830
+Gtype  -> Supp    0.462636
+O      -> Gtype   0.453324
+Supp   -> O       0.311331
+Med    -> O       0.264436
+Gtype  -> Air     0.183444
+Temp   -> O       0.158941
+Technique -> Air     0.108884
+O      -> Phase   0.000506
+Air    -> Supp    -0.000185
+Supp   -> Gtype   -0.002878
+O      -> OD      -0.009866
+Supp   -> Technique -0.043400
+Technique -> Gtype   -0.047071
+Anti   -> O       -0.051496
+Gtype  -> Anti    -0.117353
+O      -> Med     -0.118983
+Technique -> pH      -0.211980
+OD     -> Air     -0.228543
+Gversion -> O       -0.264567
+Gtype  -> Med     -0.386243
+Supp   -> Med     -0.413936
+Gtype  -> Technique -0.493289
+O      -> Air     -0.579308
+Technique -> O       -0.694824
+Gtype  -> O       -0.998730
+Med    -> Supp    -1.066796
+Substrain -> O       -1.093891
+
+
+Top positive:
+4.452085 Anti     b'-2:lemma:antibody'
+3.689675 O        b'word[:2]:re'
+3.482630 Gtype    b'word[:1]:\xce\x94'
+3.342489 O        b'-2:lemma:_'
+3.175684 Technique b'word[:2]:Ch'
+2.884271 OD       b'word[:1]:O'
+2.741246 Air      b'word[:2]:An'
+2.637598 Air      b'word[:2]:Ae'
+2.637598 Air      b'word:Aerobic'
+2.617531 Air      b'lemma:anaerobic'
+2.537522 O        b'word:A'
+2.494524 O        b'lemma:2'
+2.494524 O        b'word:2'
+2.467001 Air      b'word[:1]:A'
+2.363811 Technique b'word[:2]:RN'
+2.310310 O        b'-2:lemma:medium'
+2.291922 Gtype    b'-2:lemma:genotype/variation'
+2.286103 Supp     b'-1:word:Cra'
+2.272015 Phase    b'-2:lemma:phase'
+2.201967 O        b'word[:1]:S'
+2.155778 O        b'lemma:_'
+2.155778 O        b'word[:1]:_'
+2.155778 O        b'word:_'
+2.134515 Med      b'+2:postag:CC'
+2.110513 O        b'lemma:1'
+2.110513 O        b'word:1'
+2.050395 Gtype    b'lemma:wt'
+2.025579 Supp     b'lemma:arginine'
+2.025478 O        b'word[:1]:G'
+2.007953 Gtype    b'word[:1]:d'
+1.995272 Gtype    b'word[:1]:W'
+1.982181 O        b'lemma:3'
+1.982181 O        b'word:3'
+1.957486 Gtype    b'word[:2]:Fl'
+1.925967 Supp     b'word[:1]:I'
+1.897045 O        b'isNumber'
+1.871338 Air      b'word[:2]:an'
+1.870496 Gtype    b'hGreek'
+1.858144 O        b'+2:lemma:cra'
+1.842813 Phase    b'lemma:mid-log'
+1.842813 Phase    b'word:mid-log'
+1.762000 Supp     b'+2:lemma:iptg'
+1.751693 Supp     b'word[:2]:Fe'
+1.733316 Air      b'word[:1]:a'
+1.731487 O        b'isLower'
+1.710681 Substrain b'word[:2]:MG'
+1.697395 Anti     b'+2:lemma:antibody'
+1.693427 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.693427 Gtype    b'-1:word:\xe2\x88\x86'
+1.672893 O        b'postag:IN'
+1.672893 O        b'postag[:1]:I'
+1.672893 O        b'postag[:2]:IN'
+1.663254 Anti     b'word[:2]:an'
+1.662524 Gtype    b'-2:lemma:delta'
+1.648718 Supp     b'word[:2]:ni'
+1.648211 pH       b'word[:2]:pH'
+1.646384 pH       b'+1:postag:CD'
+1.643762 O        b'+2:lemma:\xc2\xb0c'
+1.636843 Substrain b'word[:1]:M'
+1.623586 Supp     b'-1:lemma:with'
+1.623586 Supp     b'-1:word:with'
+1.616923 O        b'lemma:-'
+1.616923 O        b'word:-'
+1.616244 O        b'word[:2]:ge'
+1.597930 Supp     b'-1:postag:CC'
+1.597275 Gtype    b'word[:2]:PK'
+1.582027 O        b'-1:word:Aerobic'
+1.576810 O        b'lemma:.'
+1.576810 O        b'postag:.'
+1.576810 O        b'postag[:1]:.'
+1.576810 O        b'word:.'
+1.554293 Gtype    b'word[:1]:w'
+1.551110 O        b'word[:1]:B'
+1.546507 O        b'-1:word:tag'
+1.529700 Gtype    b'lemma:type'
+1.529700 Gtype    b'word[:2]:ty'
+1.529700 Gtype    b'word:type'
+1.517044 Supp     b'lemma:acetate'
+1.517044 Supp     b'word:acetate'
+1.513375 O        b'-2:lemma:myc'
+1.510589 O        b'-1:lemma:tag'
+1.507823 O        b'word[:2]:Rp'
+1.507742 Technique b'word[:1]:R'
+1.482889 Technique b'word[:1]:C'
+1.482481 Supp     b'lemma:pq'
+1.482481 Supp     b'word[:2]:PQ'
+1.482481 Supp     b'word:PQ'
+1.481495 O        b'word[:1]:-'
+1.480627 O        b'postag::'
+1.480627 O        b'postag[:1]::'
+1.477504 Med      b'isUpper'
+1.439532 O        b'word[:1]:C'
+1.433463 Air      b'+1:postag:IN'
+1.417597 O        b'word[:1]:R'
+1.408489 Technique b'lemma:ChIP-exo'
+1.399469 O        b'lemma:a'
+1.374497 Temp     b'isNumber'
+1.369743 O        b'postag:CC'
+1.369743 O        b'postag[:2]:CC'
+1.369445 O        b'-1:lemma:anaerobic'
+1.366915 Temp     b'+2:postag:DT'
+1.360275 Supp     b'+1:lemma:\xc2\xb5m'
+1.360275 Supp     b'+1:word:\xc2\xb5M'
+1.348179 Supp     b'-1:lemma:Cra'
+1.343465 Supp     b'word[:2]:gl'
+1.337575 O        b'lemma:with'
+1.337575 O        b'word:with'
+1.334448 O        b'+2:postag:JJ'
+1.332963 Supp     b'word[:1]:N'
+1.325155 Med      b'word[:1]:L'
+1.308365 Supp     b'lemma:Iron'
+1.308365 Supp     b'word[:2]:Ir'
+1.308365 Supp     b'word:Iron'
+1.308365 Supp     b'+1:word:Deficient'
+1.308365 Supp     b'-2:lemma:Anaerobic'
+1.291354 Med      b'word[:1]:M'
+1.290809 Gtype    b'word[:1]:F'
+1.288935 Med      b'lemma:MOPS'
+1.288935 Med      b'word[:2]:MO'
+1.288935 Med      b'word:MOPS'
+1.282537 Gtype    b'word[:1]:t'
+1.278434 O        b'+1:word:ChIP-Seq'
+1.273443 Supp     b'-2:lemma:for'
+1.255541 Gtype    b'-2:postag:DT'
+1.255203 Technique b'+2:lemma:ph5'
+1.250661 Air      b'word:Anaerobic'
+1.236252 O        b'word[:2]:ch'
+1.233756 pH       b'word[:1]:p'
+1.233479 Gtype    b'lemma:\xe2\x88\x86'
+1.233479 Gtype    b'word[:1]:\xe2\x88\x86'
+1.233479 Gtype    b'word:\xe2\x88\x86'
+1.228084 Gtype    b'+2:lemma:glucose'
+1.223922 O        b'+2:lemma:fructose'
+1.218698 Gtype    b'symb'
+1.217647 O        b'word[:2]:ha'
+1.215512 Strain   b'+1:lemma:substr'
+1.215512 Strain   b'+1:word:substr'
+1.215512 Strain   b'-2:lemma:str'
+1.196793 O        b'-1:lemma:glucose'
+1.196793 O        b'-1:word:glucose'
+1.194057 Supp     b'-2:lemma:media'
+1.184144 O        b'-1:lemma:0.3'
+1.184144 O        b'-1:word:0.3'
+1.183310 OD       b'-1:postag:IN'
+1.178980 O        b'word[:1]:c'
+1.176425 Supp     b'word[:2]:ac'
+1.170284 Gversion b'lemma:chip-seq'
+1.168235 Gtype    b'-2:lemma:affyexp'
+1.164552 Gtype    b'word[:1]:P'
+1.156202 Gversion b'word:ChIP-Seq'
+1.156155 O        b'-1:lemma:lb'
+1.156155 O        b'-1:word:LB'
+1.149395 O        b'-1:lemma:ChIP-exo'
+1.146734 Phase    b'word[:2]:ex'
+1.142864 Gtype    b'word[:2]:WT'
+1.142864 Gtype    b'word:WT'
+1.140128 Agit     b'+2:lemma:at'
+1.135341 O        b'+1:postag:VBN'
+1.135006 Anti     b'+1:lemma:antibody'
+1.135006 Anti     b'+1:word:antibody'
+1.134467 O        b'postag:VBN'
+1.130287 Supp     b'+1:lemma:1'
+1.130287 Supp     b'+1:word:1'
+1.118529 Supp     b'postag:VBP'
+1.111752 Gtype    b'-1:postag:VBG'
+1.108134 O        b'+1:postag:RB'
+1.101074 Temp     b'lemma:43'
+1.101074 Temp     b'word[:2]:43'
+1.101074 Temp     b'word:43'
+1.096502 Supp     b'lemma:nacl'
+1.096502 Supp     b'word:NaCl'
+1.094797 O        b'word[:2]:Cr'
+1.090348 Gtype    b'-2:lemma:genotype'
+1.090152 Temp     b'word[:1]:3'
+1.085633 Temp     b'-2:lemma:30'
+1.082487 O        b'-2:lemma:fructose'
+1.079531 Gtype    b'lemma:nsrr'
+1.079531 Gtype    b'word[:2]:Ns'
+1.079531 Gtype    b'word:NsrR'
+1.079097 Technique b'symb'
+1.077150 Temp     b'isUpper'
+1.072640 Phase    b'word[:1]:e'
+1.071712 O        b'-2:lemma:flagtag'
+1.071622 Technique b'lemma:rna-seq'
+1.057972 O        b'lemma:b'
+1.057972 O        b'word:B'
+1.057103 Med      b'+2:lemma:b2'
+1.055515 O        b'-1:lemma:media'
+1.055515 O        b'-1:word:media'
+1.054647 O        b'+2:lemma:70'
+1.051568 Gtype    b'+2:lemma:a'
+1.051055 Med      b'word[:2]:me'
+1.050903 Supp     b'+2:lemma:rifampicin'
+1.049213 O        b'word[:1]:E'
+1.038966 O        b'+1:lemma:pq'
+1.038966 O        b'+1:word:PQ'
+1.036931 Substrain b'-2:lemma:substr'
+1.036271 Med      b'word[:1]:g'
+1.024899 Supp     b'-2:lemma:condition'
+1.019819 O        b'lemma:Custom'
+
+
+Top negative:
+-0.233766 O        b'-1:lemma:final'
+-0.233766 O        b'-1:word:final'
+-0.234091 O        b'+2:lemma:-rrb-'
+-0.234779 O        b'-1:postag:-LRB-'
+-0.238119 Phase    b'postag[:1]:J'
+-0.238119 Phase    b'postag[:2]:JJ'
+-0.239654 O        b'-2:lemma:a'
+-0.240870 O        b'+2:lemma:add'
+-0.242028 O        b'lemma:nitrate'
+-0.242028 O        b'word:nitrate'
+-0.245388 Supp     b'-1:lemma:-lrb-'
+-0.245388 Supp     b'-1:word:-LRB-'
+-0.248207 O        b'-2:lemma:at'
+-0.248837 Air      b'isLower'
+-0.249358 Supp     b'+1:lemma:-lrb-'
+-0.249358 Supp     b'+1:word:-LRB-'
+-0.254940 O        b'-2:lemma:rpob'
+-0.256776 Supp     b'hGreek'
+-0.256897 O        b'-2:lemma:2'
+-0.259614 Supp     b'+1:postag:-LRB-'
+-0.260142 O        b'-2:lemma:fresh'
+-0.261060 O        b'+1:lemma:+'
+-0.261060 O        b'+1:word:+'
+-0.262071 O        b'lemma:2h'
+-0.262071 O        b'-1:lemma:additional'
+-0.262071 O        b'word[:2]:2h'
+-0.262071 O        b'word:2h'
+-0.262071 O        b'-1:word:additional'
+-0.268722 Supp     b'word[:2]:an'
+-0.270059 Supp     b'-1:postag:-LRB-'
+-0.274315 O        b'+1:lemma:g/l'
+-0.274315 O        b'+1:word:g/L'
+-0.274906 O        b'-2:lemma:IP'
+-0.275720 Gtype    b'isNumber'
+-0.280363 O        b'-2:lemma:anaerobically'
+-0.282585 O        b'lemma:0.3'
+-0.282585 O        b'word:0.3'
+-0.284842 O        b'word[:2]:gl'
+-0.287099 O        b'lemma:30'
+-0.287099 O        b'word:30'
+-0.289399 O        b'+2:lemma:tag'
+-0.289844 Anti     b'isUpper'
+-0.292297 O        b'-1:lemma:control'
+-0.292297 O        b'-1:word:control'
+-0.292666 O        b'+1:lemma:1m'
+-0.292666 O        b'+1:word:1M'
+-0.292666 O        b'-2:lemma:vol'
+-0.294625 O        b'+1:lemma:.'
+-0.294625 O        b'+1:postag:.'
+-0.294625 O        b'+1:word:.'
+-0.294876 Temp     b'postag:NN'
+-0.297833 O        b'-1:lemma:ph'
+-0.297833 O        b'-1:word:pH'
+-0.298423 Technique b'isLower'
+-0.300990 Temp     b'-2:postag:NN'
+-0.305286 O        b'-1:lemma:dissolve'
+-0.305286 O        b'+1:lemma:methanol'
+-0.305286 O        b'-1:word:dissolved'
+-0.305286 O        b'+1:word:methanol'
+-0.314748 O        b'-2:lemma:pahse'
+-0.315937 O        b'-1:lemma:mm'
+-0.315937 O        b'-1:word:mM'
+-0.322399 Gtype    b'word[:1]:h'
+-0.323125 OD       b'hUpper'
+-0.323125 OD       b'hLower'
+-0.331381 O        b'-1:lemma:rpob'
+-0.331381 O        b'-1:word:RpoB'
+-0.339459 O        b'-1:postag:IN'
+-0.341910 Gtype    b'-2:lemma:\xe2\x88\x86'
+-0.342651 O        b'lemma:of'
+-0.342651 O        b'word[:2]:of'
+-0.342651 O        b'word:of'
+-0.342819 O        b'+2:lemma:fnr'
+-0.347959 Med      b'+1:postag:IN'
+-0.356951 O        b'-1:lemma:30'
+-0.356951 O        b'-1:word:30'
+-0.358047 O        b'-1:lemma:IP'
+-0.358047 O        b'-1:word:IP'
+-0.360899 O        b'+1:lemma:until'
+-0.360899 O        b'+1:word:until'
+-0.364934 O        b'-2:lemma:of'
+-0.365442 Anti     b'+1:lemma:anti-fur'
+-0.365442 Anti     b'+1:word:anti-Fur'
+-0.367544 Med      b'+1:postag:NN'
+-0.372074 O        b'word[:1]:0'
+-0.374136 O        b'word[:2]:pH'
+-0.388322 Supp     b'postag:JJ'
+-0.391570 Supp     b'postag[:1]:J'
+-0.391570 Supp     b'postag[:2]:JJ'
+-0.405960 O        b'word[:2]:mg'
+-0.412894 O        b'-2:lemma:dpd'
+-0.416528 Supp     b'+1:lemma:,'
+-0.416528 Supp     b'+1:postag:,'
+-0.416528 Supp     b'+1:word:,'
+-0.419392 O        b'+2:lemma:.'
+-0.419392 O        b'+2:postag:.'
+-0.422296 O        b'-1:lemma:nsrr'
+-0.422296 O        b'-1:word:NsrR'
+-0.423145 O        b'-2:lemma:phase'
+-0.426000 O        b'+2:lemma:10'
+-0.432994 O        b'-2:lemma:glucose'
+-0.450062 Agit     b'symb'
+-0.450812 Agit     b'hUpper'
+-0.450812 Agit     b'hLower'
+-0.475356 pH       b'isLower'
+-0.476636 Air      b'-1:postag:JJ'
+-0.481749 O        b'+2:lemma:a'
+-0.485266 O        b'+2:lemma:250'
+-0.496343 O        b'word[:2]:ri'
+-0.500963 O        b'-2:lemma:supplement'
+-0.502478 O        b'-1:lemma:1'
+-0.502478 O        b'-1:word:1'
+-0.505892 O        b'-1:lemma:vol'
+-0.505892 O        b'-1:word:vol'
+-0.505892 O        b'-2:lemma:1/100'
+-0.505892 O        b'+2:lemma:1m'
+-0.509659 O        b'-2:lemma:until'
+-0.510236 O        b'-2:postag:-LRB-'
+-0.521161 O        b'-1:lemma:co2'
+-0.521161 O        b'-1:word:CO2'
+-0.528448 Supp     b'+2:postag:NNP'
+-0.528535 O        b'-2:postag::'
+-0.533872 O        b'+2:lemma:at'
+-0.534880 O        b'word[:1]:K'
+-0.535293 Med      b'+2:postag:VBN'
+-0.541773 Supp     b'+2:lemma:glucose'
+-0.545876 Phase    b'postag:JJ'
+-0.551702 O        b'lemma:rifampicin'
+-0.551702 O        b'word:rifampicin'
+-0.552442 Supp     b'-1:postag:NNP'
+-0.558246 Gtype    b'postag[:1]:V'
+-0.558246 Gtype    b'postag[:2]:VB'
+-0.563240 Med      b'-1:postag:NN'
+-0.571846 O        b'+2:lemma:mid-log'
+-0.577127 O        b'lemma:wt'
+-0.617765 Supp     b'symb'
+-0.618558 Supp     b'-2:postag:JJ'
+-0.624362 O        b'+1:lemma:2.0'
+-0.624362 O        b'+1:word:2.0'
+-0.628911 O        b'word[:2]:fl'
+-0.645255 O        b'-2:lemma:media'
+-0.647985 O        b'lemma:mid-log'
+-0.647985 O        b'word:mid-log'
+-0.657965 Anti     b'+2:lemma:polyclonal'
+-0.658210 O        b'word[:2]:ni'
+-0.659228 O        b'+1:lemma:at'
+-0.659228 O        b'+1:word:at'
+-0.660590 O        b'+1:postag:VBG'
+-0.660829 O        b'-2:lemma::'
+-0.663451 Supp     b'word[:1]:C'
+-0.672793 Med      b'symb'
+-0.694489 O        b'+2:lemma:+'
+-0.709178 O        b'-1:lemma:2'
+-0.709178 O        b'-1:word:2'
+-0.714094 Phase    b'hUpper'
+-0.714094 Phase    b'hLower'
+-0.761826 Gtype    b'isUpper'
+-0.767486 O        b'+1:lemma:in'
+-0.767486 O        b'+1:word:in'
+-0.770064 O        b'+1:postag:IN'
+-0.778369 O        b'+2:lemma:rifampicin'
+-0.779812 Air      b'postag:NN'
+-0.789169 Anti     b'postag:NNP'
+-0.794413 O        b'-1:lemma:sample'
+-0.827931 O        b'+1:lemma:1'
+-0.827931 O        b'+1:word:1'
+-0.858848 O        b'word[:1]:N'
+-0.876126 Gversion b'isLower'
+-0.907230 O        b'+2:postag:-RRB-'
+-0.914704 Phase    b'-1:postag:JJ'
+-0.930998 Gtype    b'word[:1]:C'
+-0.934673 Med      b'-2:lemma:grow'
+-0.947305 O        b'-2:lemma:rifampicin'
+-0.949351 O        b'word[:2]:30'
+-0.965721 Technique b'postag:NN'
+-0.968173 O        b'-2:postag:DT'
+-0.969881 O        b'word[:1]:d'
+-0.992013 O        b'word[:2]:me'
+-1.005304 Gtype    b'+2:lemma:cra'
+-1.016350 Supp     b'+2:lemma:1'
+-1.016868 O        b'-2:postag:RB'
+-1.018698 Med      b'-2:postag:VBN'
+-1.049404 O        b'+2:lemma:then'
+-1.070041 Supp     b'+2:lemma:fructose'
+-1.100907 O        b'-2:lemma:0.3'
+-1.187447 O        b'+1:lemma:2'
+-1.187447 O        b'+1:word:2'
+-1.201747 O        b'postag:VBP'
+-1.230600 Supp     b'+2:postag:CD'
+-1.246552 OD       b'+2:lemma:aerobically'
+-1.286136 Supp     b'+2:lemma:2'
+-1.312055 O        b'word[:1]:P'
+-1.352684 OD       b'+1:postag:NN'
+-1.428576 O        b'-1:postag::'
+-1.785805 O        b'-1:lemma::'
+-1.785805 O        b'-1:word::'
+-1.853048 O        b'-1:postag:VBG'
+-2.104444 O        b'word[:2]:Ch'
+-2.120158 O        b'-1:lemma:_'
+-2.120158 O        b'-1:word:_'
+

+********** TRAINING AND TESTING REPORT **********
+Training file: training-data-set-70.txt
+
+best params:{'c1': 0.12475431096451621, 'c2': 0.013861677898849787}
+best CV score:0.8708258755708097
+model size: 0.13M
+
+Flat F1: 0.7686691050567419
+             precision    recall  f1-score   support
+
+         OD      0.818     0.818     0.818        22
+         pH      1.000     1.000     1.000         8
+  Technique      1.000     0.913     0.955        23
+        Med      1.000     0.962     0.981        53
+       Temp      1.000     0.828     0.906        29
+       Vess      1.000     1.000     1.000         1
+       Agit      0.000     0.000     0.000         0
+      Phase      0.882     1.000     0.938        15
+        Air      0.556     0.362     0.439        69
+       Anti      1.000     1.000     1.000        11
+     Strain      0.000     0.000     0.000         1
+      Gtype      0.867     0.847     0.857        85
+  Substrain      0.000     0.000     0.000         0
+       Supp      0.586     0.813     0.681       134
+   Gversion      0.000     0.000     0.000         0
+
+avg / total      0.769     0.787     0.769       451
+
+
+Top likely transitions:
+Agit   -> Agit    6.648242
+Temp   -> Temp    6.282260
+OD     -> OD      5.656317
+Med    -> Med     5.374931
+Supp   -> Supp    5.024760
+Gversion -> Gversion 4.860700
+Anti   -> Anti    4.808761
+Phase  -> Phase   4.070172
+Air    -> Air     4.046984
+Gtype  -> Gtype   3.891102
+O      -> O       3.673937
+Technique -> Technique 3.298287
+pH     -> pH      2.863141
+Substrain -> Gtype   0.869714
+O      -> Technique 0.537319
+Air    -> O       0.264430
+O      -> Gtype   0.222368
+Temp   -> O       0.130509
+Gtype  -> Supp    0.079007
+Technique -> Air     0.075090
+Med    -> O       0.071813
+O      -> Anti    0.041836
+O      -> Supp    0.033164
+Supp   -> O       -0.011764
+Phase  -> O       -0.027870
+OD     -> O       -0.058085
+Gversion -> O       -0.096750
+O      -> Phase   -0.097534
+Air    -> Supp    -0.189966
+Technique -> pH      -0.218375
+Temp   -> Med     -0.224152
+O      -> Med     -0.332474
+O      -> OD      -0.383967
+Gtype  -> Med     -0.624502
+Gtype  -> Technique -0.734455
+Technique -> O       -0.940389
+O      -> Air     -1.114206
+Gtype  -> O       -1.304969
+Substrain -> O       -1.345412
+Med    -> Supp    -2.177917
+
+
+Top unlikely transitions:
+Agit   -> Agit    6.648242
+Temp   -> Temp    6.282260
+OD     -> OD      5.656317
+Med    -> Med     5.374931
+Supp   -> Supp    5.024760
+Gversion -> Gversion 4.860700
+Anti   -> Anti    4.808761
+Phase  -> Phase   4.070172
+Air    -> Air     4.046984
+Gtype  -> Gtype   3.891102
+O      -> O       3.673937
+Technique -> Technique 3.298287
+pH     -> pH      2.863141
+Substrain -> Gtype   0.869714
+O      -> Technique 0.537319
+Air    -> O       0.264430
+O      -> Gtype   0.222368
+Temp   -> O       0.130509
+Gtype  -> Supp    0.079007
+Technique -> Air     0.075090
+Med    -> O       0.071813
+O      -> Anti    0.041836
+O      -> Supp    0.033164
+Supp   -> O       -0.011764
+Phase  -> O       -0.027870
+OD     -> O       -0.058085
+Gversion -> O       -0.096750
+O      -> Phase   -0.097534
+Air    -> Supp    -0.189966
+Technique -> pH      -0.218375
+Temp   -> Med     -0.224152
+O      -> Med     -0.332474
+O      -> OD      -0.383967
+Gtype  -> Med     -0.624502
+Gtype  -> Technique -0.734455
+Technique -> O       -0.940389
+O      -> Air     -1.114206
+Gtype  -> O       -1.304969
+Substrain -> O       -1.345412
+Med    -> Supp    -2.177917
+
+
+Top positive:
+5.778785 Anti     b'-2:lemma:antibody'
+5.099975 Technique b'lemma[:2]:Ch'
+4.743651 O        b'-2:lemma:_'
+4.315336 Gtype    b'lemma[:1]:\xce\xb4'
+4.248364 O        b'lemma[:2]:re'
+4.215292 Air      b'word:Aerobic'
+3.511204 O        b'postag:CC'
+3.394617 O        b'postag:IN'
+3.322867 O        b'lemma:2'
+3.322867 O        b'word:2'
+3.302849 O        b'-2:lemma:medium'
+3.302673 Substrain b'lemma[:2]:mg'
+3.165450 Technique b'lemma[:2]:rn'
+3.016068 Med      b'+2:postag:CC'
+2.985942 Air      b'word:Anaerobic'
+2.966163 O        b'lemma:1'
+2.966163 O        b'word:1'
+2.923025 O        b'lemma:3'
+2.923025 O        b'word:3'
+2.877232 Phase    b'-2:lemma:phase'
+2.867093 Supp     b'-1:word:Cra'
+2.833973 Supp     b'lemma:arginine'
+2.812849 O        b'+2:lemma:\xc2\xb0c'
+2.760554 Air      b'postag:RB'
+2.740030 O        b'lemma[:1]:h'
+2.731812 Gtype    b'-2:lemma:genotype/variation'
+2.708235 Air      b'lemma[:2]:an'
+2.604774 O        b'postag::'
+2.584655 Anti     b'+2:lemma:antibody'
+2.582878 O        b'lemma:-'
+2.582878 O        b'word:-'
+2.571693 O        b'word:Cra'
+2.568004 O        b'lemma:_'
+2.568004 O        b'lemma[:1]:_'
+2.568004 O        b'word:_'
+2.567283 O        b'-1:lemma:ChIP-exo'
+2.560556 O        b'word:A'
+2.539743 Gtype    b'word:WT'
+2.513546 O        b'lemma:.'
+2.513546 O        b'postag:.'
+2.513546 O        b'word:.'
+2.499439 Gtype    b'lemma:type'
+2.499439 Gtype    b'lemma[:2]:ty'
+2.499439 Gtype    b'word:type'
+2.460970 Air      b'lemma:anaerobic'
+2.408658 O        b'+1:postag:RB'
+2.388183 Phase    b'lemma:mid-log'
+2.388183 Phase    b'word:mid-log'
+2.384478 Supp     b'lemma[:2]:gl'
+2.383895 O        b'postag:VBN'
+2.382299 Air      b'lemma[:2]:ae'
+2.358041 O        b'lemma:with'
+2.358041 O        b'word:with'
+2.353625 Supp     b'+2:lemma:iptg'
+2.350953 Phase    b'lemma[:2]:ex'
+2.322692 Technique b'word:ChIPSeq'
+2.304893 Gtype    b'-2:lemma:delta'
+2.289460 O        b'+2:lemma:fructose'
+2.285493 O        b'+2:lemma:cra'
+2.276073 O        b'lemma[:2]:ge'
+2.256719 Supp     b'-1:postag:CC'
+2.250185 Air      b'lemma[:1]:a'
+2.234168 Gtype    b'lemma[:2]:pk'
+2.207665 O        b'-1:lemma:tag'
+2.164408 Technique b'lemma:chipseq'
+2.073628 O        b'+2:lemma:70'
+2.050739 Supp     b'lemma:pq'
+2.050739 Supp     b'lemma[:2]:pq'
+2.050739 Supp     b'word:PQ'
+2.001826 Air      b'+1:postag:IN'
+1.975647 O        b'isLower'
+1.936376 O        b'-1:word:Aerobic'
+1.920820 Gtype    b'-1:lemma:\xe2\x88\x86'
+1.920820 Gtype    b'-1:word:\xe2\x88\x86'
+1.908896 O        b'-1:lemma:anaerobic'
+1.889420 pH       b'+1:postag:CD'
+1.888509 Supp     b'lemma[:1]:n'
+1.886729 O        b'postag:DT'
+1.858376 Supp     b'lemma:Iron'
+1.858376 Supp     b'lemma[:2]:Ir'
+1.858376 Supp     b'word:Iron'
+1.858376 Supp     b'+1:word:Deficient'
+1.858376 Supp     b'-2:lemma:Anaerobic'
+1.853608 O        b'lemma:chip'
+1.838366 Gversion b'lemma:chip-seq'
+1.831815 O        b'-1:word:tag'
+1.820620 Anti     b'lemma[:2]:an'
+1.815550 Gtype    b'lemma[:1]:w'
+1.809178 Gtype    b'hGreek'
+1.792293 Gversion b'word:ChIP-Seq'
+1.775178 Gtype    b'-2:postag:DT'
+1.768307 O        b'+1:word:ChIP-Seq'
+1.764667 Supp     b'-1:lemma:with'
+1.764667 Supp     b'-1:word:with'
+1.722957 Supp     b'lemma:acetate'
+1.722957 Supp     b'word:acetate'
+1.713832 Technique b'-1:lemma:chip-exo'
+1.710287 Med      b'isUpper'
+1.709780 O        b'lemma:b'
+1.709780 O        b'word:B'
+1.704621 Technique b'word:ChIP-Seq'
+1.694028 Phase    b'lemma[:1]:e'
+1.689430 Gtype    b'+1:lemma:type'
+1.689430 Gtype    b'+1:word:type'
+1.679770 Supp     b'lemma[:1]:I'
+1.670552 Supp     b'+2:lemma:rifampicin'
+1.664056 O        b'lemma[:1]:b'
+1.661667 Substrain b'lemma[:1]:m'
+1.647294 Gtype    b'lemma:wt'
+1.647294 Gtype    b'lemma[:2]:wt'
+1.634965 O        b'-2:lemma:myc'
+1.622392 pH       b'lemma[:2]:ph'
+1.620704 Supp     b'-2:lemma:agent'
+1.618245 Technique b'lemma[:2]:ch'
+1.617020 O        b'+2:postag:JJ'
+1.593807 Supp     b'+1:lemma:\xc2\xb5m'
+1.593807 Supp     b'+1:word:\xc2\xb5M'
+1.593155 O        b'lemma:a'
+1.582387 O        b'+1:postag:NNP'
+1.579370 Temp     b'-1:word:sample'
+1.576150 Gtype    b'+2:lemma:glucose'
+1.562990 O        b'+1:lemma:pq'
+1.562990 O        b'+1:word:PQ'
+1.555511 Gtype    b'lemma[:2]:wi'
+1.554537 Gtype    b'lemma[:1]:f'
+1.545677 Temp     b'-1:lemma:sample'
+1.540501 Med      b'lemma:MOPS'
+1.540501 Med      b'lemma[:1]:M'
+1.540501 Med      b'lemma[:2]:MO'
+1.540501 Med      b'word:MOPS'
+1.522098 OD       b'lemma[:1]:o'
+1.509875 Med      b'lemma[:1]:m'
+1.505327 Phase    b'-2:lemma:until'
+1.505027 O        b'-1:lemma:lb'
+1.505027 O        b'-1:word:LB'
+1.497714 Gtype    b'-1:postag:VBG'
+1.492176 Agit     b'+2:lemma:at'
+1.486489 O        b'isNumber'
+1.464199 Gtype    b'-2:lemma:affyexp'
+1.453424 Supp     b'lemma[:2]:30'
+1.450691 Gversion b'lemma[:2]:00'
+1.450691 Gversion b'-2:lemma:nc'
+1.450278 Technique b'lemma:ChIP-exo'
+1.448397 O        b'-1:lemma:media'
+1.448397 O        b'-1:word:media'
+1.443477 Supp     b'lemma[:2]:ni'
+1.440399 O        b'lemma:Custom'
+1.440399 O        b'lemma[:2]:Cu'
+1.440399 O        b'word:Custom'
+1.429606 Supp     b'-1:lemma:Cra'
+1.425430 Supp     b'-2:lemma:media'
+1.418079 Med      b'+2:lemma:b2'
+1.404067 O        b'-1:lemma:glucose'
+1.404067 O        b'-1:word:glucose'
+1.396114 Phase    b'+2:lemma:o.d.'
+1.387435 Gtype    b'lemma:\xe2\x88\x86'
+1.387435 Gtype    b'lemma[:1]:\xe2\x88\x86'
+1.387435 Gtype    b'word:\xe2\x88\x86'
+1.349810 Temp     b'-2:lemma:\xcf\x8332'
+1.346540 Supp     b'lemma:fructose'
+1.346540 Supp     b'word:fructose'
+1.343114 Technique b'lemma[:1]:C'
+1.341281 Gversion b'-2:lemma:build'
+1.336703 O        b'-2:lemma:flagtag'
+1.328773 Med      b'lemma:broth'
+1.328773 Med      b'-1:lemma:L'
+1.328773 Med      b'lemma[:2]:br'
+1.328773 Med      b'word:broth'
+1.328773 Med      b'-1:word:L'
+1.325888 Supp     b'+1:lemma:1'
+1.325888 Supp     b'+1:word:1'
+1.321862 Anti     b'+1:lemma:antibody'
+1.321862 Anti     b'+1:word:antibody'
+1.316632 O        b'+2:lemma:polyclonal'
+1.311992 O        b'-1:lemma:0.3'
+1.311992 O        b'-1:word:0.3'
+1.295781 Gtype    b'lemma[:2]:de'
+1.284876 Gtype    b'-2:lemma:genotype'
+1.277004 Supp     b'-2:lemma:condition'
+1.273482 Supp     b'-2:lemma:induce'
+1.271728 Air      b'-1:postag::'
+1.268149 Phase    b'lemma:stationary'
+1.268149 Phase    b'word:stationary'
+1.262573 Technique b'-1:lemma:input'
+1.262573 Technique b'-1:word:Input'
+1.259324 Gversion b'-2:postag:VB'
+1.259137 Supp     b'lemma[:2]:ac'
+1.259012 O        b'+1:lemma:mid-log'
+1.259012 O        b'+1:word:mid-log'
+1.253088 Temp     b'-1:lemma:43'
+1.253088 Temp     b'-1:word:43'
+1.253040 Gtype    b'lemma:nsrr'
+1.253040 Gtype    b'lemma[:2]:ns'
+1.253040 Gtype    b'word:NsrR'
+1.237967 O        b'lemma:0.4'
+1.237967 O        b'word:0.4'
+1.236427 O        b'-1:lemma:type'
+1.236427 O        b'-1:word:type'
+1.229582 O        b'lemma:ompr'
+1.229582 O        b'word:OmpR'
+
+
+Top negative:
+-0.226109 O        b'+1:word:+'
+-0.228043 Supp     b'-1:lemma:-lrb-'
+-0.228043 Supp     b'-1:word:-LRB-'
+-0.230436 O        b'-1:lemma:37'
+-0.230436 O        b'-1:word:37'
+-0.231705 O        b'-2:lemma:rpob'
+-0.238413 Supp     b'-2:lemma:treat'
+-0.244411 O        b'+1:lemma:supplement'
+-0.244411 O        b'+1:word:supplemented'
+-0.245251 Supp     b'-1:postag:-LRB-'
+-0.247310 O        b'+2:lemma:at'
+-0.248881 Supp     b'-2:lemma:grow'
+-0.251177 O        b'lemma[:1]:I'
+-0.254376 Supp     b'+2:lemma:glucose'
+-0.259696 O        b'-1:lemma:ph'
+-0.259696 O        b'-1:word:pH'
+-0.264998 O        b'-2:postag:-LRB-'
+-0.269895 O        b'lemma[:2]:0.'
+-0.271060 O        b'lemma:media'
+-0.271060 O        b'word:media'
+-0.271346 O        b'lemma:of'
+-0.271346 O        b'lemma[:2]:of'
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