report_Run_8_v12.txt
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70.txt
best params:{'c1': 0.16987113834357556, 'c2': 0.04496913983225195}
best CV score:0.8747625195626942
model size: 0.13M
Flat F1: 0.7884082577489101
precision recall f1-score support
OD 0.818 0.818 0.818 22
pH 1.000 1.000 1.000 8
Technique 1.000 1.000 1.000 23
Med 1.000 0.962 0.981 53
Temp 0.923 0.828 0.873 29
Vess 1.000 1.000 1.000 1
Agit 0.000 0.000 0.000 0
Phase 0.875 0.933 0.903 15
Air 0.556 0.362 0.439 69
Anti 1.000 1.000 1.000 11
Strain 0.000 0.000 0.000 1
Gtype 0.864 0.824 0.843 85
Substrain 0.000 0.000 0.000 0
Supp 0.712 0.813 0.760 134
Gversion 0.000 0.000 0.000 0
avg / total 0.801 0.785 0.788 451
Top likely transitions:
OD -> OD 5.257890
Temp -> Temp 5.205804
Med -> Med 4.966902
Supp -> Supp 4.928476
Agit -> Agit 4.916983
Anti -> Anti 4.149202
Air -> Air 3.992915
Gversion -> Gversion 3.819753
Gtype -> Gtype 3.718805
Phase -> Phase 3.610359
O -> O 3.452915
Technique -> Technique 3.113366
pH -> pH 2.349939
Substrain -> Gtype 0.775262
O -> Technique 0.770450
O -> Supp 0.669913
Air -> O 0.473830
Gtype -> Supp 0.462636
O -> Gtype 0.453324
Supp -> O 0.311331
Med -> O 0.264436
Gtype -> Air 0.183444
Temp -> O 0.158941
Technique -> Air 0.108884
O -> Phase 0.000506
Air -> Supp -0.000185
Supp -> Gtype -0.002878
O -> OD -0.009866
Supp -> Technique -0.043400
Technique -> Gtype -0.047071
Anti -> O -0.051496
Gtype -> Anti -0.117353
O -> Med -0.118983
Technique -> pH -0.211980
OD -> Air -0.228543
Gversion -> O -0.264567
Gtype -> Med -0.386243
Supp -> Med -0.413936
Gtype -> Technique -0.493289
O -> Air -0.579308
Technique -> O -0.694824
Gtype -> O -0.998730
Med -> Supp -1.066796
Substrain -> O -1.093891
Top unlikely transitions:
OD -> OD 5.257890
Temp -> Temp 5.205804
Med -> Med 4.966902
Supp -> Supp 4.928476
Agit -> Agit 4.916983
Anti -> Anti 4.149202
Air -> Air 3.992915
Gversion -> Gversion 3.819753
Gtype -> Gtype 3.718805
Phase -> Phase 3.610359
O -> O 3.452915
Technique -> Technique 3.113366
pH -> pH 2.349939
Substrain -> Gtype 0.775262
O -> Technique 0.770450
O -> Supp 0.669913
Air -> O 0.473830
Gtype -> Supp 0.462636
O -> Gtype 0.453324
Supp -> O 0.311331
Med -> O 0.264436
Gtype -> Air 0.183444
Temp -> O 0.158941
Technique -> Air 0.108884
O -> Phase 0.000506
Air -> Supp -0.000185
Supp -> Gtype -0.002878
O -> OD -0.009866
Supp -> Technique -0.043400
Technique -> Gtype -0.047071
Anti -> O -0.051496
Gtype -> Anti -0.117353
O -> Med -0.118983
Technique -> pH -0.211980
OD -> Air -0.228543
Gversion -> O -0.264567
Gtype -> Med -0.386243
Supp -> Med -0.413936
Gtype -> Technique -0.493289
O -> Air -0.579308
Technique -> O -0.694824
Gtype -> O -0.998730
Med -> Supp -1.066796
Substrain -> O -1.093891
Top positive:
4.452085 Anti b'-2:lemma:antibody'
3.689675 O b'word[:2]:re'
3.482630 Gtype b'word[:1]:\xce\x94'
3.342489 O b'-2:lemma:_'
3.175684 Technique b'word[:2]:Ch'
2.884271 OD b'word[:1]:O'
2.741246 Air b'word[:2]:An'
2.637598 Air b'word[:2]:Ae'
2.637598 Air b'word:Aerobic'
2.617531 Air b'lemma:anaerobic'
2.537522 O b'word:A'
2.494524 O b'lemma:2'
2.494524 O b'word:2'
2.467001 Air b'word[:1]:A'
2.363811 Technique b'word[:2]:RN'
2.310310 O b'-2:lemma:medium'
2.291922 Gtype b'-2:lemma:genotype/variation'
2.286103 Supp b'-1:word:Cra'
2.272015 Phase b'-2:lemma:phase'
2.201967 O b'word[:1]:S'
2.155778 O b'lemma:_'
2.155778 O b'word[:1]:_'
2.155778 O b'word:_'
2.134515 Med b'+2:postag:CC'
2.110513 O b'lemma:1'
2.110513 O b'word:1'
2.050395 Gtype b'lemma:wt'
2.025579 Supp b'lemma:arginine'
2.025478 O b'word[:1]:G'
2.007953 Gtype b'word[:1]:d'
1.995272 Gtype b'word[:1]:W'
1.982181 O b'lemma:3'
1.982181 O b'word:3'
1.957486 Gtype b'word[:2]:Fl'
1.925967 Supp b'word[:1]:I'
1.897045 O b'isNumber'
1.871338 Air b'word[:2]:an'
1.870496 Gtype b'hGreek'
1.858144 O b'+2:lemma:cra'
1.842813 Phase b'lemma:mid-log'
1.842813 Phase b'word:mid-log'
1.762000 Supp b'+2:lemma:iptg'
1.751693 Supp b'word[:2]:Fe'
1.733316 Air b'word[:1]:a'
1.731487 O b'isLower'
1.710681 Substrain b'word[:2]:MG'
1.697395 Anti b'+2:lemma:antibody'
1.693427 Gtype b'-1:lemma:\xe2\x88\x86'
1.693427 Gtype b'-1:word:\xe2\x88\x86'
1.672893 O b'postag:IN'
1.672893 O b'postag[:1]:I'
1.672893 O b'postag[:2]:IN'
1.663254 Anti b'word[:2]:an'
1.662524 Gtype b'-2:lemma:delta'
1.648718 Supp b'word[:2]:ni'
1.648211 pH b'word[:2]:pH'
1.646384 pH b'+1:postag:CD'
1.643762 O b'+2:lemma:\xc2\xb0c'
1.636843 Substrain b'word[:1]:M'
1.623586 Supp b'-1:lemma:with'
1.623586 Supp b'-1:word:with'
1.616923 O b'lemma:-'
1.616923 O b'word:-'
1.616244 O b'word[:2]:ge'
1.597930 Supp b'-1:postag:CC'
1.597275 Gtype b'word[:2]:PK'
1.582027 O b'-1:word:Aerobic'
1.576810 O b'lemma:.'
1.576810 O b'postag:.'
1.576810 O b'postag[:1]:.'
1.576810 O b'word:.'
1.554293 Gtype b'word[:1]:w'
1.551110 O b'word[:1]:B'
1.546507 O b'-1:word:tag'
1.529700 Gtype b'lemma:type'
1.529700 Gtype b'word[:2]:ty'
1.529700 Gtype b'word:type'
1.517044 Supp b'lemma:acetate'
1.517044 Supp b'word:acetate'
1.513375 O b'-2:lemma:myc'
1.510589 O b'-1:lemma:tag'
1.507823 O b'word[:2]:Rp'
1.507742 Technique b'word[:1]:R'
1.482889 Technique b'word[:1]:C'
1.482481 Supp b'lemma:pq'
1.482481 Supp b'word[:2]:PQ'
1.482481 Supp b'word:PQ'
1.481495 O b'word[:1]:-'
1.480627 O b'postag::'
1.480627 O b'postag[:1]::'
1.477504 Med b'isUpper'
1.439532 O b'word[:1]:C'
1.433463 Air b'+1:postag:IN'
1.417597 O b'word[:1]:R'
1.408489 Technique b'lemma:ChIP-exo'
1.399469 O b'lemma:a'
1.374497 Temp b'isNumber'
1.369743 O b'postag:CC'
1.369743 O b'postag[:2]:CC'
1.369445 O b'-1:lemma:anaerobic'
1.366915 Temp b'+2:postag:DT'
1.360275 Supp b'+1:lemma:\xc2\xb5m'
1.360275 Supp b'+1:word:\xc2\xb5M'
1.348179 Supp b'-1:lemma:Cra'
1.343465 Supp b'word[:2]:gl'
1.337575 O b'lemma:with'
1.337575 O b'word:with'
1.334448 O b'+2:postag:JJ'
1.332963 Supp b'word[:1]:N'
1.325155 Med b'word[:1]:L'
1.308365 Supp b'lemma:Iron'
1.308365 Supp b'word[:2]:Ir'
1.308365 Supp b'word:Iron'
1.308365 Supp b'+1:word:Deficient'
1.308365 Supp b'-2:lemma:Anaerobic'
1.291354 Med b'word[:1]:M'
1.290809 Gtype b'word[:1]:F'
1.288935 Med b'lemma:MOPS'
1.288935 Med b'word[:2]:MO'
1.288935 Med b'word:MOPS'
1.282537 Gtype b'word[:1]:t'
1.278434 O b'+1:word:ChIP-Seq'
1.273443 Supp b'-2:lemma:for'
1.255541 Gtype b'-2:postag:DT'
1.255203 Technique b'+2:lemma:ph5'
1.250661 Air b'word:Anaerobic'
1.236252 O b'word[:2]:ch'
1.233756 pH b'word[:1]:p'
1.233479 Gtype b'lemma:\xe2\x88\x86'
1.233479 Gtype b'word[:1]:\xe2\x88\x86'
1.233479 Gtype b'word:\xe2\x88\x86'
1.228084 Gtype b'+2:lemma:glucose'
1.223922 O b'+2:lemma:fructose'
1.218698 Gtype b'symb'
1.217647 O b'word[:2]:ha'
1.215512 Strain b'+1:lemma:substr'
1.215512 Strain b'+1:word:substr'
1.215512 Strain b'-2:lemma:str'
1.196793 O b'-1:lemma:glucose'
1.196793 O b'-1:word:glucose'
1.194057 Supp b'-2:lemma:media'
1.184144 O b'-1:lemma:0.3'
1.184144 O b'-1:word:0.3'
1.183310 OD b'-1:postag:IN'
1.178980 O b'word[:1]:c'
1.176425 Supp b'word[:2]:ac'
1.170284 Gversion b'lemma:chip-seq'
1.168235 Gtype b'-2:lemma:affyexp'
1.164552 Gtype b'word[:1]:P'
1.156202 Gversion b'word:ChIP-Seq'
1.156155 O b'-1:lemma:lb'
1.156155 O b'-1:word:LB'
1.149395 O b'-1:lemma:ChIP-exo'
1.146734 Phase b'word[:2]:ex'
1.142864 Gtype b'word[:2]:WT'
1.142864 Gtype b'word:WT'
1.140128 Agit b'+2:lemma:at'
1.135341 O b'+1:postag:VBN'
1.135006 Anti b'+1:lemma:antibody'
1.135006 Anti b'+1:word:antibody'
1.134467 O b'postag:VBN'
1.130287 Supp b'+1:lemma:1'
1.130287 Supp b'+1:word:1'
1.118529 Supp b'postag:VBP'
1.111752 Gtype b'-1:postag:VBG'
1.108134 O b'+1:postag:RB'
1.101074 Temp b'lemma:43'
1.101074 Temp b'word[:2]:43'
1.101074 Temp b'word:43'
1.096502 Supp b'lemma:nacl'
1.096502 Supp b'word:NaCl'
1.094797 O b'word[:2]:Cr'
1.090348 Gtype b'-2:lemma:genotype'
1.090152 Temp b'word[:1]:3'
1.085633 Temp b'-2:lemma:30'
1.082487 O b'-2:lemma:fructose'
1.079531 Gtype b'lemma:nsrr'
1.079531 Gtype b'word[:2]:Ns'
1.079531 Gtype b'word:NsrR'
1.079097 Technique b'symb'
1.077150 Temp b'isUpper'
1.072640 Phase b'word[:1]:e'
1.071712 O b'-2:lemma:flagtag'
1.071622 Technique b'lemma:rna-seq'
1.057972 O b'lemma:b'
1.057972 O b'word:B'
1.057103 Med b'+2:lemma:b2'
1.055515 O b'-1:lemma:media'
1.055515 O b'-1:word:media'
1.054647 O b'+2:lemma:70'
1.051568 Gtype b'+2:lemma:a'
1.051055 Med b'word[:2]:me'
1.050903 Supp b'+2:lemma:rifampicin'
1.049213 O b'word[:1]:E'
1.038966 O b'+1:lemma:pq'
1.038966 O b'+1:word:PQ'
1.036931 Substrain b'-2:lemma:substr'
1.036271 Med b'word[:1]:g'
1.024899 Supp b'-2:lemma:condition'
1.019819 O b'lemma:Custom'
Top negative:
-0.233766 O b'-1:lemma:final'
-0.233766 O b'-1:word:final'
-0.234091 O b'+2:lemma:-rrb-'
-0.234779 O b'-1:postag:-LRB-'
-0.238119 Phase b'postag[:1]:J'
-0.238119 Phase b'postag[:2]:JJ'
-0.239654 O b'-2:lemma:a'
-0.240870 O b'+2:lemma:add'
-0.242028 O b'lemma:nitrate'
-0.242028 O b'word:nitrate'
-0.245388 Supp b'-1:lemma:-lrb-'
-0.245388 Supp b'-1:word:-LRB-'
-0.248207 O b'-2:lemma:at'
-0.248837 Air b'isLower'
-0.249358 Supp b'+1:lemma:-lrb-'
-0.249358 Supp b'+1:word:-LRB-'
-0.254940 O b'-2:lemma:rpob'
-0.256776 Supp b'hGreek'
-0.256897 O b'-2:lemma:2'
-0.259614 Supp b'+1:postag:-LRB-'
-0.260142 O b'-2:lemma:fresh'
-0.261060 O b'+1:lemma:+'
-0.261060 O b'+1:word:+'
-0.262071 O b'lemma:2h'
-0.262071 O b'-1:lemma:additional'
-0.262071 O b'word[:2]:2h'
-0.262071 O b'word:2h'
-0.262071 O b'-1:word:additional'
-0.268722 Supp b'word[:2]:an'
-0.270059 Supp b'-1:postag:-LRB-'
-0.274315 O b'+1:lemma:g/l'
-0.274315 O b'+1:word:g/L'
-0.274906 O b'-2:lemma:IP'
-0.275720 Gtype b'isNumber'
-0.280363 O b'-2:lemma:anaerobically'
-0.282585 O b'lemma:0.3'
-0.282585 O b'word:0.3'
-0.284842 O b'word[:2]:gl'
-0.287099 O b'lemma:30'
-0.287099 O b'word:30'
-0.289399 O b'+2:lemma:tag'
-0.289844 Anti b'isUpper'
-0.292297 O b'-1:lemma:control'
-0.292297 O b'-1:word:control'
-0.292666 O b'+1:lemma:1m'
-0.292666 O b'+1:word:1M'
-0.292666 O b'-2:lemma:vol'
-0.294625 O b'+1:lemma:.'
-0.294625 O b'+1:postag:.'
-0.294625 O b'+1:word:.'
-0.294876 Temp b'postag:NN'
-0.297833 O b'-1:lemma:ph'
-0.297833 O b'-1:word:pH'
-0.298423 Technique b'isLower'
-0.300990 Temp b'-2:postag:NN'
-0.305286 O b'-1:lemma:dissolve'
-0.305286 O b'+1:lemma:methanol'
-0.305286 O b'-1:word:dissolved'
-0.305286 O b'+1:word:methanol'
-0.314748 O b'-2:lemma:pahse'
-0.315937 O b'-1:lemma:mm'
-0.315937 O b'-1:word:mM'
-0.322399 Gtype b'word[:1]:h'
-0.323125 OD b'hUpper'
-0.323125 OD b'hLower'
-0.331381 O b'-1:lemma:rpob'
-0.331381 O b'-1:word:RpoB'
-0.339459 O b'-1:postag:IN'
-0.341910 Gtype b'-2:lemma:\xe2\x88\x86'
-0.342651 O b'lemma:of'
-0.342651 O b'word[:2]:of'
-0.342651 O b'word:of'
-0.342819 O b'+2:lemma:fnr'
-0.347959 Med b'+1:postag:IN'
-0.356951 O b'-1:lemma:30'
-0.356951 O b'-1:word:30'
-0.358047 O b'-1:lemma:IP'
-0.358047 O b'-1:word:IP'
-0.360899 O b'+1:lemma:until'
-0.360899 O b'+1:word:until'
-0.364934 O b'-2:lemma:of'
-0.365442 Anti b'+1:lemma:anti-fur'
-0.365442 Anti b'+1:word:anti-Fur'
-0.367544 Med b'+1:postag:NN'
-0.372074 O b'word[:1]:0'
-0.374136 O b'word[:2]:pH'
-0.388322 Supp b'postag:JJ'
-0.391570 Supp b'postag[:1]:J'
-0.391570 Supp b'postag[:2]:JJ'
-0.405960 O b'word[:2]:mg'
-0.412894 O b'-2:lemma:dpd'
-0.416528 Supp b'+1:lemma:,'
-0.416528 Supp b'+1:postag:,'
-0.416528 Supp b'+1:word:,'
-0.419392 O b'+2:lemma:.'
-0.419392 O b'+2:postag:.'
-0.422296 O b'-1:lemma:nsrr'
-0.422296 O b'-1:word:NsrR'
-0.423145 O b'-2:lemma:phase'
-0.426000 O b'+2:lemma:10'
-0.432994 O b'-2:lemma:glucose'
-0.450062 Agit b'symb'
-0.450812 Agit b'hUpper'
-0.450812 Agit b'hLower'
-0.475356 pH b'isLower'
-0.476636 Air b'-1:postag:JJ'
-0.481749 O b'+2:lemma:a'
-0.485266 O b'+2:lemma:250'
-0.496343 O b'word[:2]:ri'
-0.500963 O b'-2:lemma:supplement'
-0.502478 O b'-1:lemma:1'
-0.502478 O b'-1:word:1'
-0.505892 O b'-1:lemma:vol'
-0.505892 O b'-1:word:vol'
-0.505892 O b'-2:lemma:1/100'
-0.505892 O b'+2:lemma:1m'
-0.509659 O b'-2:lemma:until'
-0.510236 O b'-2:postag:-LRB-'
-0.521161 O b'-1:lemma:co2'
-0.521161 O b'-1:word:CO2'
-0.528448 Supp b'+2:postag:NNP'
-0.528535 O b'-2:postag::'
-0.533872 O b'+2:lemma:at'
-0.534880 O b'word[:1]:K'
-0.535293 Med b'+2:postag:VBN'
-0.541773 Supp b'+2:lemma:glucose'
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