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MonogenicDiseases
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Authored by
Kevin Meza Landeros
2020-05-02 22:30:14 -0500
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2867abc8dece895be39139e569038c9800f2cec1
2867abc8
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f7e5bd7f
Extraccion de infomacion DISEASES BD
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scripts/get_monogenic_disease_data.sh
scripts/get_monogenic_disease_data.sh
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2867abc
# ENFERMEDADES MONOGENICAS
# Equipo 5
# Filtramos aquellas enfermedades de nustro interes
cat human_disease_textmining_full.tsv | grep
'DOID:0050177'
> DOID_filter/monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep
'DOID:0050735'
> DOID_filter/x_linked_monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep
'DOID:0050738'
> DOID_filter/y_linked_monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep
'DOID:0050739'
> DOID_filter/autosomal_monogenic_diseases.tsv
# Agrupar todas las enfermedades monogénicas
cd
DOID_filter
cat autosomal_monogenic_diseases.tsv monogenic_diseases.tsv x_linked_monogenic_diseases.tsv y_linked_monogenic_diseases.tsv > merge_monogenic_diseases.tsv
# Cramos una lista de los genes asociados a enfermedades monogenicas
cat merge_monogenic_diseases.tsv | cut -f1 > merge_list_monogenic_diseases.tsv
# Recuperamos la anotacion de Ensembl para cada uno de los genes de interes
grep -f merge_list_monogenic_diseases.tsv ../mart_export.txt > ../match.tsv
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