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scripts/get_monogenic_disease_data.sh
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1 | +# ENFERMEDADES MONOGENICAS | ||
2 | +# Equipo 5 | ||
3 | + | ||
4 | +# Filtramos aquellas enfermedades de nustro interes | ||
5 | +cat human_disease_textmining_full.tsv | grep 'DOID:0050177' > DOID_filter/monogenic_diseases.tsv | ||
6 | +cat human_disease_textmining_full.tsv | grep 'DOID:0050735' > DOID_filter/x_linked_monogenic_diseases.tsv | ||
7 | +cat human_disease_textmining_full.tsv | grep 'DOID:0050738' > DOID_filter/y_linked_monogenic_diseases.tsv | ||
8 | +cat human_disease_textmining_full.tsv | grep 'DOID:0050739' > DOID_filter/autosomal_monogenic_diseases.tsv | ||
9 | + | ||
10 | +# Agrupar todas las enfermedades monogénicas | ||
11 | +cd DOID_filter | ||
12 | +cat autosomal_monogenic_diseases.tsv monogenic_diseases.tsv x_linked_monogenic_diseases.tsv y_linked_monogenic_diseases.tsv > merge_monogenic_diseases.tsv | ||
13 | + | ||
14 | +# Cramos una lista de los genes asociados a enfermedades monogenicas | ||
15 | +cat merge_monogenic_diseases.tsv | cut -f1 > merge_list_monogenic_diseases.tsv | ||
16 | + | ||
17 | +# Recuperamos la anotacion de Ensembl para cada uno de los genes de interes | ||
18 | +grep -f merge_list_monogenic_diseases.tsv ../mart_export.txt > ../match.tsv |
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