# ENFERMEDADES MONOGENICAS
# Equipo 5

# Filtramos aquellas enfermedades de nustro interes
cat human_disease_textmining_full.tsv | grep 'DOID:0050177' > DOID_filter/monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep 'DOID:0050735' > DOID_filter/x_linked_monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep 'DOID:0050738' > DOID_filter/y_linked_monogenic_diseases.tsv
cat human_disease_textmining_full.tsv | grep 'DOID:0050739' > DOID_filter/autosomal_monogenic_diseases.tsv

# Agrupar todas las enfermedades monogénicas
cd DOID_filter
cat autosomal_monogenic_diseases.tsv monogenic_diseases.tsv x_linked_monogenic_diseases.tsv y_linked_monogenic_diseases.tsv > merge_monogenic_diseases.tsv

# Cramos una lista de los genes asociados a enfermedades monogenicas
cat merge_monogenic_diseases.tsv | cut -f1 > merge_list_monogenic_diseases.tsv

# Recuperamos la anotacion de Ensembl para cada uno de los genes de interes
grep -f merge_list_monogenic_diseases.tsv ../mart_export.txt > ../match.tsv