files

-# missing word embeddings:
-29c
-14
-31
-26a
-beta1
-486
-profibrotic
-92a
-29a
-matricellular
-155
-13
-b1
-etiopathology
-nexin
-avb6
-21
-19
-acetylglucosaminidase
-326
-dermatan
-1b
-p38
-47
-68
-3p
-dedifferentiating
-alpha3beta1
-chymase
-2alpha
-90
-7d
-5100
-18a
-1a
-alpha3
-150
-1343
-140
-541
-fibrogenesis
-221
-mitophagy
-b4
-p63
-10
-5p
-haptotactic
-nonkinase
-farnesoid
-lymphopoietin
-7a
-18
-338
-1beta
-424
-199a
-154
-smad2
-17
-185
-bronchoalveolar
-101
-profibrogenic
-153
-gambogic
-ubiquitinating
-p110y
-200
-323a
-196a
-dysregulates
-fibrogenic
-salvianolic
-# missing MI weights:
-Tumor
-sTNFR
-Compromised
-Modulating
-Renin
-Invasive
-Cytokine
-D1
-C3aR
-Prostaglandin
-Diagnostic
-HLA
-Interstitial
-Transforming
-Phenotypes
-Up
-Clinical
-TGFb
-Interplay
-Animal
-Decoction
-Foxp3high
-Leucine
-CCL2
-SDKP
-IL
-Correct
-Elk1
-Participation
-Azithromycin
-Amplification
-1A
-Endothelin
-Kinase
-Possible
-Associated
-MicroRNA
-sL1
-Action
-For
-Development
-Establishment
-Extracellular
-Epstein
-MUM
-Serine
-Interactions
-Macrophage
-Pseudomonas
-Cytokines
-IGFBP
-Calu
-PI3K
-B4
-Chinese
-Cigarette
-BALF
-NK
-alphaEbeta7
-microRNAs
-Gene
-True
-Pneumonia
-CUX1
-miRNA
-Ubiquitin
-Wnt
-CDCP1
-Barr
-ORP150
-Curcumin
-aB
-Myofibroblast
-JNK
-Aortic
-L5
-Hsp90
-Smoke
-IFN
-Reactive
-Significance
-aVb6
-Th2
-Constitutive
-Melatonin
-Mediates
-AP
-Lindau
-ALK5
-AKT2
-EMT
-Reversion
-Patients
-Solution
-Focal
-Immunoglobulin
-RhoA
-Neutrophil
-BMPR2
-CXCL9
-Lower
-Olodaterol
-Lavage
-Induces
-Induced
-Beyond
-MMP
-Fstl1
-cAMP
-Aging
-SPARC
-Activity
-ECM
-Human
-Fibrotic
-Repression
-Prostatic
-NOX4
-Against
-Discovery
-Resveratrol
-Interleukin
-Deleted
-Differentiation
-Spiruchostatin
-Insulin
-PXS64
-MCTC
-HP
-Triptolide
-Values
-Differential
-Lysyl
-FGF
-Promote
-Yin
-Tissue
-BMP
-CAM
-Discoidin
-Overproduction
-Wilms
-Regulates
-Reduced
-Mesenchymal
-Inflammation
-PINK1
-Release
-E2
-CD44V6
-TGFbeta1
-Rg1
-H441
-kDa
-M2
-Expression
-Data
-Contribution
-Negative
-Nintedanib
-Pulmonary
-Emphysema
-Intrinsic
-17A
-Marks
-26S
-RXFP1
-Neovessel
-Genetic
-Protective
-Tensin
-Inducer
-Like
-Determining
-Increased
-Microsatellite
-Sphingosine
-TRPV4
-Club
-Methylation
-Phenoconversion
-Serpin
-Activated
-Muc5ac
-MyD88
-Glucagon
-IPF
-SIRT6
-Rapamycin
-Essential
-TNFalpha
-Corilagin
-Sorafenib
-Epithelial
-T869C
-Induction
-Long
-Wt1
-Molecules
-TGFBR2
-P110
-Nuclear
-Old
-Targeting
-WNT7B
-Thy
-Potential
-TGF
-Tubastatin
-Semaphorin
-Attenuating
-Smad
-Pigment
-Homolog
-Binding
-microRNA
-C57BL
-Regulating
-Implications
-Hydrogen
-BARD1
-A549
-Homeostasis
-Selectivity
-Medical
-Model
-Cytoskeletal
-Differing
-BMP3
-Enhances
-NADPH
-Fibrogenesis
-Defect
-Two
-FAK
-RNA
-Quantifying
-Epigenetic
-Profibrotic
-Ambroxol
-Trigger
-Titration
-Transcription
-Regulation
-Mitochondrial
-H1N1
-Recent
-BMPER
-PPARs
-VCAM
-Microsomal
-Hippel
-Renshen
-Absence
-Anchorage
-Applying
-Free
-OSF
-PGE
-Tannic
-Plasminogen
-TGFBR
-Channel
-Age
-Cell
-Connective
-Proteasomal
-RAGE
-Bach1
-Pirfenidone
-Outcomes
-GATA
-Small
-Autoimmunity
-III
-VEGF
-Control
-HSP27
-Cartilage
-Periostin
-Idiopathic
-COL1A1
-CBP
-Bronchoalveolar
-Crosstalk
-Amplified
-Evidence
-Simvastatin
-Sphingolipids
-Mechanisms
-JAK2
-Rats
-Mice
-Protease
-From
-LPA1
-Collagen
-Carbon
-Molecular
-Stat3
-Genomewide
-Stem
-S1P
-Novel
-EBV
-Serum
-Abrogation
-That
-Pingfei
-Stromal
-Current
-Molecule
-MAP3K19
-Decisive
-Protein
-Fluid
-HDAC4
-Angiotensin
-SOCS1
-Different
-Membrane
-Domain
-Secretory
-Signalling
-NCI
-Bax
-ADAM
-Are
-Beta1
-Activation
-Problem
-Prognostic
-II
-Sputum
-Phosphatase
-Inhibition
-Profile
-Dogs
-HRCT
-lncRNA
-Storage
-Nitrated
-Box
-Forkhead
-CREB
-Sirtuin
-Cryptogenic
-Decreased
-Inhibits
-Formation
-MK2
-Comparison
-Mediated
-Latent
-Recombinant
-Microencapsulation
-PHGDH
-Organizing
-Dysfunction
-Way
-Using
-Peripheral
-Markers
-MiR
-Anti
-Studies
-May
-Significant
-Morphogenic
-Low
-Lactic
-Overexpression
-Protects
-Arsenic
-Caveolin
-pH
-Inhibit
-Proteasome
-MicroRNAs
-Toll
-Herpes
-CTGF
-Normal
-Defective
-CD44
-Large
-Ligands
-Axis
-NH2
-Progression
-Smad3
-Phenotype
-Ets
-Identification
-kB
-Role
-Relation
-Mode
-Developmental
-Fibrosis
-Stanniocalcin
-WNT10A
-Integrated
-Syndecan
-Metalloproteinase
-TOB2
-USP11
-WISP1
-Dysregulated
-Th17
-Progressive
-Key
-Subpleural
-Mast
-Rho
-Growth
-Upregulation
-Alleviates
-Re
-Preventive
-ITGB6
-Fibroblasts
-ATG4B
-Comparative
-Cthrc1
-mRNA
-Peptide
-SNAI
-BM
-ATPase
-AKT
-Fibroblastic
-Matriptase
-Sub
-Sustained
-Pleiotropic
-New
-Regulator
-Receptor
-Therapeutic
-Vimentin
-IGF
-Cells
-LIGHT
-Production
-D2
-Dehydroepiandrosterone
-Lin28B
-Antifibrotic
-Raised
-Proliferation
-Dependent
-COL1
-Lysocardiolipin
-Epithelium
-STAT3
-Prevents
-Th1
-NF
-CCN5
-Snail
-Myogenic
-CD4
-Akt
-TGFb1
-Accelerated
-PDGF
-Intratracheal
-TGFB1
-Cysteine
-Oxidant
-Effect
-Reprogramming
-IIP
-MS80
-FOXF1
-Promotes
-Assessment
-BLM
-CC16
-BAL
-CD248
-Ginsenoside
-Secreted
-Association
-IQ
-mTORC2
-Established
-The
-Combined
-Jun
-UIP
-Sulf2
-Thalidomide
-Bioenergetics
-TNF
-CCN2
-NEU1
-Attenuates
-HMGA2
-Group
-Conversion
-Predisposition
-Transglutaminase
-Pathway
-Reviews
-Treg
-DDR2
-Autophagy
-Hyper
-Bile
-Sunitinib
-Stiffening
-Signal
-Resolution
-De
-Type
-Factor
-Smad2
-Single
-PPAR
-WNT5A
-Novo
-An
-EGFR
-Cub
-GLI
-HSP47
-Early
-ERK1
-TGFbeta
-Deficiency
-hydroxytryptamine2A
-BAX
-Inhibitory
-Integrin
-Suppression
-Shikonin
-SMAD3
-Effects
-Metformin
-F1
-MAPK
-Modulation
-Bleomycin
-Injury
-Elevated
-Cellular
-Radioligand
-Citrus
-TIAM1
-Subjects
-Lung
-ARPC2
-H19
-EZH2
-Pathways
-Is
-Microarray
-Fas
-CCN1
-Ac
-miRNAs
-Myofibroblasts
-FFPE
-Inhibitor
-During
-Matrix
-Nrf2
-Immunomodulation
-C5aR
-Gremlin
-High
-Concentration
-Evaluation
-Roles
-Number
-Bone
-ACLP
-Hypertension
-Lipogenic
-Uncoupling
-Signaling
-Lrp5
-Berberine
-A4
-CD11c
-miR
-Chop
-Galectin
-Alveolar
-Transition
-Plasma
-Impacts
-Smad4
-Its
-Pathogenesis
-Inappropriate
-Investigation
-Beta
-Ca
-ERK
-Deregulation
-MSCs
-PTEN
-Lipoxin
-Nitric
-C1q
-KCa3
-kappaB
-Involvement
-MCP
-Pleural
-EMMPRIN
-Smooth
-Synthesis
-Blockade
-Compared
-Transgelin

@@ -4,4 +4,4 @@ grep -E "\|t\|" title-sentences.txt | perl -ne 'if(/(\d+\|t\|)(.*)/){print "$2\n
 
 # Run wisse
 
-python3.4 wisse_example.py --input ../corpora/abstracts-titles.txt --idfmodel local --embedmodel /export/space1/users/compu2/bionlp/word-embeddings/w2v/almac/ignacio/data/word2vec/indexed_w2v_En_vector_space_H300 --localw binary --output ../embeddings/abstracts-titles.vec --format wisse &
+python3.4 wisse_example.py --input ../corpora/articles-titles.txt --idfmodel local --embedmodel /export/space1/users/compu2/bionlp/word-embeddings/w2v/almac/ignacio/data/word2vec/indexed_w2v_En_vector_space_H300 --localw binary --output ../embeddings/articles-titles.vec --format wisse &