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5 changed files
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696 deletions
1 | -# missing word embeddings: | ||
2 | -29c | ||
3 | -14 | ||
4 | -31 | ||
5 | -26a | ||
6 | -beta1 | ||
7 | -486 | ||
8 | -profibrotic | ||
9 | -92a | ||
10 | -29a | ||
11 | -matricellular | ||
12 | -155 | ||
13 | -13 | ||
14 | -b1 | ||
15 | -etiopathology | ||
16 | -nexin | ||
17 | -avb6 | ||
18 | -21 | ||
19 | -19 | ||
20 | -acetylglucosaminidase | ||
21 | -326 | ||
22 | -dermatan | ||
23 | -1b | ||
24 | -p38 | ||
25 | -47 | ||
26 | -68 | ||
27 | -3p | ||
28 | -dedifferentiating | ||
29 | -alpha3beta1 | ||
30 | -chymase | ||
31 | -2alpha | ||
32 | -90 | ||
33 | -7d | ||
34 | -5100 | ||
35 | -18a | ||
36 | -1a | ||
37 | -alpha3 | ||
38 | -150 | ||
39 | -1343 | ||
40 | -140 | ||
41 | -541 | ||
42 | -fibrogenesis | ||
43 | -221 | ||
44 | -mitophagy | ||
45 | -b4 | ||
46 | -p63 | ||
47 | -10 | ||
48 | -5p | ||
49 | -haptotactic | ||
50 | -nonkinase | ||
51 | -farnesoid | ||
52 | -lymphopoietin | ||
53 | -7a | ||
54 | -18 | ||
55 | -338 | ||
56 | -1beta | ||
57 | -424 | ||
58 | -199a | ||
59 | -154 | ||
60 | -smad2 | ||
61 | -17 | ||
62 | -185 | ||
63 | -bronchoalveolar | ||
64 | -101 | ||
65 | -profibrogenic | ||
66 | -153 | ||
67 | -gambogic | ||
68 | -ubiquitinating | ||
69 | -p110y | ||
70 | -200 | ||
71 | -323a | ||
72 | -196a | ||
73 | -dysregulates | ||
74 | -fibrogenic | ||
75 | -salvianolic | ||
76 | -# missing MI weights: | ||
77 | -Tumor | ||
78 | -sTNFR | ||
79 | -Compromised | ||
80 | -Modulating | ||
81 | -Renin | ||
82 | -Invasive | ||
83 | -Cytokine | ||
84 | -D1 | ||
85 | -C3aR | ||
86 | -Prostaglandin | ||
87 | -Diagnostic | ||
88 | -HLA | ||
89 | -Interstitial | ||
90 | -Transforming | ||
91 | -Phenotypes | ||
92 | -Up | ||
93 | -Clinical | ||
94 | -TGFb | ||
95 | -Interplay | ||
96 | -Animal | ||
97 | -Decoction | ||
98 | -Foxp3high | ||
99 | -Leucine | ||
100 | -CCL2 | ||
101 | -SDKP | ||
102 | -IL | ||
103 | -Correct | ||
104 | -Elk1 | ||
105 | -Participation | ||
106 | -Azithromycin | ||
107 | -Amplification | ||
108 | -1A | ||
109 | -Endothelin | ||
110 | -Kinase | ||
111 | -Possible | ||
112 | -Associated | ||
113 | -MicroRNA | ||
114 | -sL1 | ||
115 | -Action | ||
116 | -For | ||
117 | -Development | ||
118 | -Establishment | ||
119 | -Extracellular | ||
120 | -Epstein | ||
121 | -MUM | ||
122 | -Serine | ||
123 | -Interactions | ||
124 | -Macrophage | ||
125 | -Pseudomonas | ||
126 | -Cytokines | ||
127 | -IGFBP | ||
128 | -Calu | ||
129 | -PI3K | ||
130 | -B4 | ||
131 | -Chinese | ||
132 | -Cigarette | ||
133 | -BALF | ||
134 | -NK | ||
135 | -alphaEbeta7 | ||
136 | -microRNAs | ||
137 | -Gene | ||
138 | -True | ||
139 | -Pneumonia | ||
140 | -CUX1 | ||
141 | -miRNA | ||
142 | -Ubiquitin | ||
143 | -Wnt | ||
144 | -CDCP1 | ||
145 | -Barr | ||
146 | -ORP150 | ||
147 | -Curcumin | ||
148 | -aB | ||
149 | -Myofibroblast | ||
150 | -JNK | ||
151 | -Aortic | ||
152 | -L5 | ||
153 | -Hsp90 | ||
154 | -Smoke | ||
155 | -IFN | ||
156 | -Reactive | ||
157 | -Significance | ||
158 | -aVb6 | ||
159 | -Th2 | ||
160 | -Constitutive | ||
161 | -Melatonin | ||
162 | -Mediates | ||
163 | -AP | ||
164 | -Lindau | ||
165 | -ALK5 | ||
166 | -AKT2 | ||
167 | -EMT | ||
168 | -Reversion | ||
169 | -Patients | ||
170 | -Solution | ||
171 | -Focal | ||
172 | -Immunoglobulin | ||
173 | -RhoA | ||
174 | -Neutrophil | ||
175 | -BMPR2 | ||
176 | -CXCL9 | ||
177 | -Lower | ||
178 | -Olodaterol | ||
179 | -Lavage | ||
180 | -Induces | ||
181 | -Induced | ||
182 | -Beyond | ||
183 | -MMP | ||
184 | -Fstl1 | ||
185 | -cAMP | ||
186 | -Aging | ||
187 | -SPARC | ||
188 | -Activity | ||
189 | -ECM | ||
190 | -Human | ||
191 | -Fibrotic | ||
192 | -Repression | ||
193 | -Prostatic | ||
194 | -NOX4 | ||
195 | -Against | ||
196 | -Discovery | ||
197 | -Resveratrol | ||
198 | -Interleukin | ||
199 | -Deleted | ||
200 | -Differentiation | ||
201 | -Spiruchostatin | ||
202 | -Insulin | ||
203 | -PXS64 | ||
204 | -MCTC | ||
205 | -HP | ||
206 | -Triptolide | ||
207 | -Values | ||
208 | -Differential | ||
209 | -Lysyl | ||
210 | -FGF | ||
211 | -Promote | ||
212 | -Yin | ||
213 | -Tissue | ||
214 | -BMP | ||
215 | -CAM | ||
216 | -Discoidin | ||
217 | -Overproduction | ||
218 | -Wilms | ||
219 | -Regulates | ||
220 | -Reduced | ||
221 | -Mesenchymal | ||
222 | -Inflammation | ||
223 | -PINK1 | ||
224 | -Release | ||
225 | -E2 | ||
226 | -CD44V6 | ||
227 | -TGFbeta1 | ||
228 | -Rg1 | ||
229 | -H441 | ||
230 | -kDa | ||
231 | -M2 | ||
232 | -Expression | ||
233 | -Data | ||
234 | -Contribution | ||
235 | -Negative | ||
236 | -Nintedanib | ||
237 | -Pulmonary | ||
238 | -Emphysema | ||
239 | -Intrinsic | ||
240 | -17A | ||
241 | -Marks | ||
242 | -26S | ||
243 | -RXFP1 | ||
244 | -Neovessel | ||
245 | -Genetic | ||
246 | -Protective | ||
247 | -Tensin | ||
248 | -Inducer | ||
249 | -Like | ||
250 | -Determining | ||
251 | -Increased | ||
252 | -Microsatellite | ||
253 | -Sphingosine | ||
254 | -TRPV4 | ||
255 | -Club | ||
256 | -Methylation | ||
257 | -Phenoconversion | ||
258 | -Serpin | ||
259 | -Activated | ||
260 | -Muc5ac | ||
261 | -MyD88 | ||
262 | -Glucagon | ||
263 | -IPF | ||
264 | -SIRT6 | ||
265 | -Rapamycin | ||
266 | -Essential | ||
267 | -TNFalpha | ||
268 | -Corilagin | ||
269 | -Sorafenib | ||
270 | -Epithelial | ||
271 | -T869C | ||
272 | -Induction | ||
273 | -Long | ||
274 | -Wt1 | ||
275 | -Molecules | ||
276 | -TGFBR2 | ||
277 | -P110 | ||
278 | -Nuclear | ||
279 | -Old | ||
280 | -Targeting | ||
281 | -WNT7B | ||
282 | -Thy | ||
283 | -Potential | ||
284 | -TGF | ||
285 | -Tubastatin | ||
286 | -Semaphorin | ||
287 | -Attenuating | ||
288 | -Smad | ||
289 | -Pigment | ||
290 | -Homolog | ||
291 | -Binding | ||
292 | -microRNA | ||
293 | -C57BL | ||
294 | -Regulating | ||
295 | -Implications | ||
296 | -Hydrogen | ||
297 | -BARD1 | ||
298 | -A549 | ||
299 | -Homeostasis | ||
300 | -Selectivity | ||
301 | -Medical | ||
302 | -Model | ||
303 | -Cytoskeletal | ||
304 | -Differing | ||
305 | -BMP3 | ||
306 | -Enhances | ||
307 | -NADPH | ||
308 | -Fibrogenesis | ||
309 | -Defect | ||
310 | -Two | ||
311 | -FAK | ||
312 | -RNA | ||
313 | -Quantifying | ||
314 | -Epigenetic | ||
315 | -Profibrotic | ||
316 | -Ambroxol | ||
317 | -Trigger | ||
318 | -Titration | ||
319 | -Transcription | ||
320 | -Regulation | ||
321 | -Mitochondrial | ||
322 | -H1N1 | ||
323 | -Recent | ||
324 | -BMPER | ||
325 | -PPARs | ||
326 | -VCAM | ||
327 | -Microsomal | ||
328 | -Hippel | ||
329 | -Renshen | ||
330 | -Absence | ||
331 | -Anchorage | ||
332 | -Applying | ||
333 | -Free | ||
334 | -OSF | ||
335 | -PGE | ||
336 | -Tannic | ||
337 | -Plasminogen | ||
338 | -TGFBR | ||
339 | -Channel | ||
340 | -Age | ||
341 | -Cell | ||
342 | -Connective | ||
343 | -Proteasomal | ||
344 | -RAGE | ||
345 | -Bach1 | ||
346 | -Pirfenidone | ||
347 | -Outcomes | ||
348 | -GATA | ||
349 | -Small | ||
350 | -Autoimmunity | ||
351 | -III | ||
352 | -VEGF | ||
353 | -Control | ||
354 | -HSP27 | ||
355 | -Cartilage | ||
356 | -Periostin | ||
357 | -Idiopathic | ||
358 | -COL1A1 | ||
359 | -CBP | ||
360 | -Bronchoalveolar | ||
361 | -Crosstalk | ||
362 | -Amplified | ||
363 | -Evidence | ||
364 | -Simvastatin | ||
365 | -Sphingolipids | ||
366 | -Mechanisms | ||
367 | -JAK2 | ||
368 | -Rats | ||
369 | -Mice | ||
370 | -Protease | ||
371 | -From | ||
372 | -LPA1 | ||
373 | -Collagen | ||
374 | -Carbon | ||
375 | -Molecular | ||
376 | -Stat3 | ||
377 | -Genomewide | ||
378 | -Stem | ||
379 | -S1P | ||
380 | -Novel | ||
381 | -EBV | ||
382 | -Serum | ||
383 | -Abrogation | ||
384 | -That | ||
385 | -Pingfei | ||
386 | -Stromal | ||
387 | -Current | ||
388 | -Molecule | ||
389 | -MAP3K19 | ||
390 | -Decisive | ||
391 | -Protein | ||
392 | -Fluid | ||
393 | -HDAC4 | ||
394 | -Angiotensin | ||
395 | -SOCS1 | ||
396 | -Different | ||
397 | -Membrane | ||
398 | -Domain | ||
399 | -Secretory | ||
400 | -Signalling | ||
401 | -NCI | ||
402 | -Bax | ||
403 | -ADAM | ||
404 | -Are | ||
405 | -Beta1 | ||
406 | -Activation | ||
407 | -Problem | ||
408 | -Prognostic | ||
409 | -II | ||
410 | -Sputum | ||
411 | -Phosphatase | ||
412 | -Inhibition | ||
413 | -Profile | ||
414 | -Dogs | ||
415 | -HRCT | ||
416 | -lncRNA | ||
417 | -Storage | ||
418 | -Nitrated | ||
419 | -Box | ||
420 | -Forkhead | ||
421 | -CREB | ||
422 | -Sirtuin | ||
423 | -Cryptogenic | ||
424 | -Decreased | ||
425 | -Inhibits | ||
426 | -Formation | ||
427 | -MK2 | ||
428 | -Comparison | ||
429 | -Mediated | ||
430 | -Latent | ||
431 | -Recombinant | ||
432 | -Microencapsulation | ||
433 | -PHGDH | ||
434 | -Organizing | ||
435 | -Dysfunction | ||
436 | -Way | ||
437 | -Using | ||
438 | -Peripheral | ||
439 | -Markers | ||
440 | -MiR | ||
441 | -Anti | ||
442 | -Studies | ||
443 | -May | ||
444 | -Significant | ||
445 | -Morphogenic | ||
446 | -Low | ||
447 | -Lactic | ||
448 | -Overexpression | ||
449 | -Protects | ||
450 | -Arsenic | ||
451 | -Caveolin | ||
452 | -pH | ||
453 | -Inhibit | ||
454 | -Proteasome | ||
455 | -MicroRNAs | ||
456 | -Toll | ||
457 | -Herpes | ||
458 | -CTGF | ||
459 | -Normal | ||
460 | -Defective | ||
461 | -CD44 | ||
462 | -Large | ||
463 | -Ligands | ||
464 | -Axis | ||
465 | -NH2 | ||
466 | -Progression | ||
467 | -Smad3 | ||
468 | -Phenotype | ||
469 | -Ets | ||
470 | -Identification | ||
471 | -kB | ||
472 | -Role | ||
473 | -Relation | ||
474 | -Mode | ||
475 | -Developmental | ||
476 | -Fibrosis | ||
477 | -Stanniocalcin | ||
478 | -WNT10A | ||
479 | -Integrated | ||
480 | -Syndecan | ||
481 | -Metalloproteinase | ||
482 | -TOB2 | ||
483 | -USP11 | ||
484 | -WISP1 | ||
485 | -Dysregulated | ||
486 | -Th17 | ||
487 | -Progressive | ||
488 | -Key | ||
489 | -Subpleural | ||
490 | -Mast | ||
491 | -Rho | ||
492 | -Growth | ||
493 | -Upregulation | ||
494 | -Alleviates | ||
495 | -Re | ||
496 | -Preventive | ||
497 | -ITGB6 | ||
498 | -Fibroblasts | ||
499 | -ATG4B | ||
500 | -Comparative | ||
501 | -Cthrc1 | ||
502 | -mRNA | ||
503 | -Peptide | ||
504 | -SNAI | ||
505 | -BM | ||
506 | -ATPase | ||
507 | -AKT | ||
508 | -Fibroblastic | ||
509 | -Matriptase | ||
510 | -Sub | ||
511 | -Sustained | ||
512 | -Pleiotropic | ||
513 | -New | ||
514 | -Regulator | ||
515 | -Receptor | ||
516 | -Therapeutic | ||
517 | -Vimentin | ||
518 | -IGF | ||
519 | -Cells | ||
520 | -LIGHT | ||
521 | -Production | ||
522 | -D2 | ||
523 | -Dehydroepiandrosterone | ||
524 | -Lin28B | ||
525 | -Antifibrotic | ||
526 | -Raised | ||
527 | -Proliferation | ||
528 | -Dependent | ||
529 | -COL1 | ||
530 | -Lysocardiolipin | ||
531 | -Epithelium | ||
532 | -STAT3 | ||
533 | -Prevents | ||
534 | -Th1 | ||
535 | -NF | ||
536 | -CCN5 | ||
537 | -Snail | ||
538 | -Myogenic | ||
539 | -CD4 | ||
540 | -Akt | ||
541 | -TGFb1 | ||
542 | -Accelerated | ||
543 | -PDGF | ||
544 | -Intratracheal | ||
545 | -TGFB1 | ||
546 | -Cysteine | ||
547 | -Oxidant | ||
548 | -Effect | ||
549 | -Reprogramming | ||
550 | -IIP | ||
551 | -MS80 | ||
552 | -FOXF1 | ||
553 | -Promotes | ||
554 | -Assessment | ||
555 | -BLM | ||
556 | -CC16 | ||
557 | -BAL | ||
558 | -CD248 | ||
559 | -Ginsenoside | ||
560 | -Secreted | ||
561 | -Association | ||
562 | -IQ | ||
563 | -mTORC2 | ||
564 | -Established | ||
565 | -The | ||
566 | -Combined | ||
567 | -Jun | ||
568 | -UIP | ||
569 | -Sulf2 | ||
570 | -Thalidomide | ||
571 | -Bioenergetics | ||
572 | -TNF | ||
573 | -CCN2 | ||
574 | -NEU1 | ||
575 | -Attenuates | ||
576 | -HMGA2 | ||
577 | -Group | ||
578 | -Conversion | ||
579 | -Predisposition | ||
580 | -Transglutaminase | ||
581 | -Pathway | ||
582 | -Reviews | ||
583 | -Treg | ||
584 | -DDR2 | ||
585 | -Autophagy | ||
586 | -Hyper | ||
587 | -Bile | ||
588 | -Sunitinib | ||
589 | -Stiffening | ||
590 | -Signal | ||
591 | -Resolution | ||
592 | -De | ||
593 | -Type | ||
594 | -Factor | ||
595 | -Smad2 | ||
596 | -Single | ||
597 | -PPAR | ||
598 | -WNT5A | ||
599 | -Novo | ||
600 | -An | ||
601 | -EGFR | ||
602 | -Cub | ||
603 | -GLI | ||
604 | -HSP47 | ||
605 | -Early | ||
606 | -ERK1 | ||
607 | -TGFbeta | ||
608 | -Deficiency | ||
609 | -hydroxytryptamine2A | ||
610 | -BAX | ||
611 | -Inhibitory | ||
612 | -Integrin | ||
613 | -Suppression | ||
614 | -Shikonin | ||
615 | -SMAD3 | ||
616 | -Effects | ||
617 | -Metformin | ||
618 | -F1 | ||
619 | -MAPK | ||
620 | -Modulation | ||
621 | -Bleomycin | ||
622 | -Injury | ||
623 | -Elevated | ||
624 | -Cellular | ||
625 | -Radioligand | ||
626 | -Citrus | ||
627 | -TIAM1 | ||
628 | -Subjects | ||
629 | -Lung | ||
630 | -ARPC2 | ||
631 | -H19 | ||
632 | -EZH2 | ||
633 | -Pathways | ||
634 | -Is | ||
635 | -Microarray | ||
636 | -Fas | ||
637 | -CCN1 | ||
638 | -Ac | ||
639 | -miRNAs | ||
640 | -Myofibroblasts | ||
641 | -FFPE | ||
642 | -Inhibitor | ||
643 | -During | ||
644 | -Matrix | ||
645 | -Nrf2 | ||
646 | -Immunomodulation | ||
647 | -C5aR | ||
648 | -Gremlin | ||
649 | -High | ||
650 | -Concentration | ||
651 | -Evaluation | ||
652 | -Roles | ||
653 | -Number | ||
654 | -Bone | ||
655 | -ACLP | ||
656 | -Hypertension | ||
657 | -Lipogenic | ||
658 | -Uncoupling | ||
659 | -Signaling | ||
660 | -Lrp5 | ||
661 | -Berberine | ||
662 | -A4 | ||
663 | -CD11c | ||
664 | -miR | ||
665 | -Chop | ||
666 | -Galectin | ||
667 | -Alveolar | ||
668 | -Transition | ||
669 | -Plasma | ||
670 | -Impacts | ||
671 | -Smad4 | ||
672 | -Its | ||
673 | -Pathogenesis | ||
674 | -Inappropriate | ||
675 | -Investigation | ||
676 | -Beta | ||
677 | -Ca | ||
678 | -ERK | ||
679 | -Deregulation | ||
680 | -MSCs | ||
681 | -PTEN | ||
682 | -Lipoxin | ||
683 | -Nitric | ||
684 | -C1q | ||
685 | -KCa3 | ||
686 | -kappaB | ||
687 | -Involvement | ||
688 | -MCP | ||
689 | -Pleural | ||
690 | -EMMPRIN | ||
691 | -Smooth | ||
692 | -Synthesis | ||
693 | -Blockade | ||
694 | -Compared | ||
695 | -Transgelin |
... | @@ -4,4 +4,4 @@ grep -E "\|t\|" title-sentences.txt | perl -ne 'if(/(\d+\|t\|)(.*)/){print "$2\n | ... | @@ -4,4 +4,4 @@ grep -E "\|t\|" title-sentences.txt | perl -ne 'if(/(\d+\|t\|)(.*)/){print "$2\n |
4 | 4 | ||
5 | # Run wisse | 5 | # Run wisse |
6 | 6 | ||
7 | -python3.4 wisse_example.py --input ../corpora/abstracts-titles.txt --idfmodel local --embedmodel /export/space1/users/compu2/bionlp/word-embeddings/w2v/almac/ignacio/data/word2vec/indexed_w2v_En_vector_space_H300 --localw binary --output ../embeddings/abstracts-titles.vec --format wisse & | 7 | +python3.4 wisse_example.py --input ../corpora/articles-titles.txt --idfmodel local --embedmodel /export/space1/users/compu2/bionlp/word-embeddings/w2v/almac/ignacio/data/word2vec/indexed_w2v_En_vector_space_H300 --localw binary --output ../embeddings/articles-titles.vec --format wisse & | ... | ... |
-
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