Carlos-Francisco Méndez-Cruz / lcg-bioinfoI-bionlp

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Carlos-Francisco Méndez-Cruz
14ca2f31 1 parent da3df41d

Training, crossvalidation and testing dataset

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...@@ -54,6 +54,7 @@ __author__ = 'CMendezC' ...@@ -54,6 +54,7 @@ __author__ = 'CMendezC'
54 54
55 # source activate python3 55 # source activate python3
56 # python imb-training-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM-lineal.txt --classifier SVM --kernel linear 56 # python imb-training-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM-lineal.txt --classifier SVM --kernel linear
57 +# python imb-training-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM-lineal-RandomUS.txt --classifier SVM --kernel linear --imbalanced RandomUS
57 58
58 59
59 # --imbalanced RandomUS 60 # --imbalanced RandomUS
...@@ -197,7 +198,7 @@ if __name__ == "__main__": ...@@ -197,7 +198,7 @@ if __name__ == "__main__":
197 if args.classifier == 'SVM': 198 if args.classifier == 'SVM':
198 # SVM 199 # SVM
199 myClassifier = SVC(kernel=args.kernel) 200 myClassifier = SVC(kernel=args.kernel)
200 - elif args.myClassifier == 'BernoulliNB': 201 + elif args.classifier == 'BernoulliNB':
201 # BernoulliNB 202 # BernoulliNB
202 myClassifier = BernoulliNB() 203 myClassifier = BernoulliNB()
203 elif args.classifier == 'kNN': 204 elif args.classifier == 'kNN':
......