Carlos-Francisco Méndez-Cruz / lcg-bioinfoI-bionlp

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Carlos-Francisco Méndez-Cruz
14ca2f31 1 parent da3df41d

Training, crossvalidation and testing dataset

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......@@ -54,6 +54,7 @@ __author__ = 'CMendezC'
# source activate python3
# python imb-training-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM-lineal.txt --classifier SVM --kernel linear
# python imb-training-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM-lineal-RandomUS.txt --classifier SVM --kernel linear --imbalanced RandomUS
# --imbalanced RandomUS
......@@ -197,7 +198,7 @@ if __name__ == "__main__":
if args.classifier == 'SVM':
# SVM
myClassifier = SVC(kernel=args.kernel)
elif args.myClassifier == 'BernoulliNB':
elif args.classifier == 'BernoulliNB':
# BernoulliNB
myClassifier = BernoulliNB()
elif args.classifier == 'kNN':
......