Carlos-Francisco Méndez-Cruz / deep-learning-workshop

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Carlos-Francisco Méndez-Cruz
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Deep Learning Workshop

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...@@ -23,12 +23,12 @@ ...@@ -23,12 +23,12 @@
23 # Sinik 23 # Sinik
24 # python3 get-hga-sequences-py3.py 24 # python3 get-hga-sequences-py3.py
25 # --feature gene 25 # --feature gene
26 -# --outputFile hga-sequences-toy.txt 26 +# --outputFile hga-sequences-10000.txt
27 # --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation 27 # --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation
28 # --hgaFile Homo_sapiens.GRCh38.92.csv 28 # --hgaFile Homo_sapiens.GRCh38.92.csv
29 # --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation 29 # --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation
30 # --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna 30 # --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna
31 -# python3 get-hga-sequences-py3.py --feature gene --outputFile hga-sequences.txt --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --hgaFile Homo_sapiens.GRCh38.92.csv --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna 31 +# python3 get-hga-sequences-py3.py --outputFile hga-sequences-10000.txt --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --hgaFile Homo_sapiens.GRCh38.92.csv --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna
32 32
33 import argparse 33 import argparse
34 # from Bio import SeqIO 34 # from Bio import SeqIO
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