Carlos-Francisco Méndez-Cruz / deep-learning-workshop

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Carlos-Francisco Méndez-Cruz
5c29e4e1 1 parent 4d536d40

Deep Learning Workshop

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# Sinik
# python3 get-hga-sequences-py3.py
# --feature gene
# --outputFile hga-sequences-toy.txt
# --outputFile hga-sequences-10000.txt
# --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation
# --hgaFile Homo_sapiens.GRCh38.92.csv
# --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation
# --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna
# python3 get-hga-sequences-py3.py --feature gene --outputFile hga-sequences.txt --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --hgaFile Homo_sapiens.GRCh38.92.csv --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna
# python3 get-hga-sequences-py3.py --outputFile hga-sequences-10000.txt --outputPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --hgaFile Homo_sapiens.GRCh38.92.csv --hgaPath /home/cmendezc/gitlab-deep-learning-workshop/data-sets/human-genome-annotation --fastaPath /home/cmendezc/data-FASTA-Homo_sapiens.GRCh38.dna
import argparse
# from Bio import SeqIO
......