# Copyright (c) 1966-2018 Johns Hopkins University. Use of this file adheres to the terms specified at https://omim.org/help/agreement.
# Generated: 2018-04-14
# See end of file for additional documentation on specific fields
# Chromosome	Genomic Position Start	Genomic Position End	Cyto Location	Computed Cyto Location	Mim Number	Gene Symbols	Gene Name	Approved Symbol	Entrez Gene ID	Ensembl Gene ID	Comments	Phenotypes	Mouse Gene Symbol/ID
chr1	0	27600000	1p36		607413	AD7CNTP	Alzheimer disease neuronal thread protein						
chr1	0	27600000	1p36		612367	ALPQTL2	Alkaline phosphatase, plasma level of, QTL 2		100196914		linkage with rs1780324	{Alkaline phosphatase, plasma level of, QTL 2}, 612367 (2)	
chr1	0	123400000	1p		606788	ANON1	Anorexia nervosa, susceptibility to, 1		171514			{Anorexia nervosa, susceptibility to, 1}, 606788 (2)	
chr1	0	27600000	1p36		605462	BCC1	Basal cell carcinoma, susceptibility to, 1		100307118		associated with rs7538876	{Basal cell carcinoma, susceptibility to, 1}, 605462 (2)	
chr1	0	27600000	1p36		606928	BMND3	Bone mineral density QTL 3		246259		?another locus at 3p21	[Bone mineral density QTL 3], 606928 (2)	
chr1	0	27600000	1p36		155600	CMM, MLM, DNS	Cutaneous malignant melanoma/dysplastic nevus	CMM	1243		some linkage studies negative; see 9p	{Melanoma, cutaneous malignant, 1}, 155600 (2), Autosomal dominant	
chr1	0	20100000	1pter-p36.13		115665	CTRCT8, CCV	Cataract, congenital, Volkmann type	CCV	7792		linked to Rh in Scottish family	Cataract 8, multiple types, 115665 (2), Autosomal dominant	
chr1	0	27600000	1p36		607872	DEL1p36, C1DELp36	Chromosome 1p36 deletion syndrome				contiguous gene deletion syndrome	Chromosome 1p36 deletion syndrome, 607872 (4), Isolated cases	
chr1	0	46300000	1p36-p34		608995	DYX8	Dyslexia, susceptibility to, 8	DYX8	406874		between D1S552 and D1S1622	{Dyslexia, susceptibility to, 8}, 608995 (2), Autosomal dominant, Multifactorial	
chr1	0	27600000	1pter-p36		131190	ERPL1, HLM2	Endogenous retroviral pol gene-like sequence 1 (oncogene HLM2)						
chr1	0	27600000	1p36		605225	IBD7	Inflammatory bowel disease 7	IBD7	57042		associated with rs6426833	{Inflammatory bowel disease 7}, 605225 (2)	
chr1	0	27600000	1p36		612596	MS4	Multiple sclerosis, susceptibility to, 4		100271696		associated with rs10492972	{Multiple sclerosis, susceptibility to, 4}, 612596 (2)	
chr1	0	27600000	1p36		610320	MYP14	Myopia 14	MYP14	100359407		between D1S552 and D1S1622	Myopia 14, 610320 (2)	
chr1	0	123400000	1p		605606	PSORS7	Psoriasis susceptibility 7	PSORS7	65245			{Psoriasis susceptibility 7}, 605606 (2)	
chr1	0	7100000	1p36.3		604008	PTPRZ2	Protein-tyrosine phosphatase, receptor-type, zeta-2	PTPRZ2	5804				
chr1	0	94300000	1pter-p22.1		154280	SAI1, MTS1, TFS1	Suppression of anchorage independence-1 (malignant transformation suppression-1)	SAI1	6298				
chr1	0	27600000	1p36		607317	SCAR4, SCASI	Spinocerebellar ataxia, autosomal recessive 4	SCASI	260415			Spinocerebellar ataxia, autosomal recessive 4, 607317 (2), Autosomal recessive	
chr1	925740	944580	1p36.33	1p36.33	616765	SAMD11, MRS	Sterile alpha motif domain-containing protein 11	SAMD11	148398	ENSG00000187634			Samd11 (MGI:2446220)
chr1	944202	959298	1p36.33	1p36.33	610770	NOC2L, NIR	Nucleolar complex-associated protein 2, S. cerevisiae, homolog of	NOC2L	26155	ENSG00000188976			Noc2l (MGI:1931051)
chr1	975197	982116	1p36.33	1p36.33	615921	PERM1, C1orf170	PPARGC1-and ESRR-induced regulator, muscle, 1	PERM1	84808	ENSG00000187642			
chr1	998961	1001051	1p36.31	1p36.33	608060	HES4	Hairy/enhancer of split, Drosophila, homolog of, 4	HES4	57801	ENSG00000188290			
chr1	1013466	1014539	1p36.33	1p36.33	147571	ISG15, G1P2, IFI15, IMD38	ISG15 ubiquitin-like modifier	ISG15	9636	ENSG00000187608		Immunodeficiency 38, 616126 (3), Autosomal recessive	Isg15 (MGI:1855694)
chr1	1020101	1056118	1pter-p32	1p36.33	103320	AGRN, CMS8	Agrin	AGRN	375790	ENSG00000188157		Myasthenic syndrome, congenital, 8, with pre- and postsynaptic defects, 615120 (3), Autosomal recessive	Agrn (MGI:87961)
chr1	1167103	1167197	1p36.33	1p36.33	612091	MIR200B, MIRN200B	Micro RNA 200B	MIR200B	406984				
chr1	1167862	1167951	1p36.33	1p36.33	612090	MIR200A, MIRN200A	Micro RNA 200A	MIR200A	406983				
chr1	1169004	1169086	1p36.33	1p36.33	612094	MIR429, MIRN429	Micro RNA 429	MIR429	554210				
chr1	1203507	1207900	1p36.3	1p36.33	603905	TNFRSF18, AITR, GITR	Tumor necrosis factor receptor superfamily, member 18	TNFRSF18	8784	ENSG00000186891			Tnfrsf18 (MGI:894675)
chr1	1211325	1216811	1p36	1p36.33	600315	TNFRSF4, TXGP1L, OX40, ACT35, IMD16	Tumor necrosis factor receptor superfamily, member 4	TNFRSF4	7293	ENSG00000186827	mutation identified in 1 IMD16 family	?Immunodeficiency 16, 615593 (3), Autosomal recessive	Tnfrsf4 (MGI:104512)
chr1	1216907	1232066	1p36.33	1p36.33	614282	SDF4, CAB45	Stromal cell-derived factor 4	SDF4	51150	ENSG00000078808			Sdf4 (MGI:108079)
chr1	1232248	1235040	1p36.3	1p36.33	615291	B3GALT6, SEMDJL1, EDSSPD2	UDP-Gal:beta-Gal beta-1,3-galactosyltransferase polypeptide 6	B3GALT6	126792	ENSG00000176022		Ehlers-Danlos syndrome, spondylodysplastic type, 2, 615349 (3), Autosomal recessive; Spondyloepimetaphyseal dysplasia with joint laxity, type 1, with or without fractures, 271640 (3), Autosomal recessive	B3galt6 (MGI:2152819)
chr1	1242445	1247217	1p36.33	1p36.33	616593	FAM132A, C1QDC2, C1QTNF12	Family with sequence similarity 132, member A	C1QTNF12	388581	ENSG00000184163			C1qtnf12 (MGI:1914639)
chr1	1280435	1292028	1p36.3-p36.2	1p36.33	601328	SCNN1D	Sodium channel, voltage-gated, type I, delta polypeptide	SCNN1D	6339	ENSG00000162572			
chr1	1311584	1324686	1p36.33	1p36.33	611354	CPSF3L, INTS11, RC68	Cleavage and polyadenylation-specific factor 3-like	INTS11	54973	ENSG00000127054			Ints11 (MGI:1919207)
chr1	1324756	1328895	1p36.33	1p36.33	615467	GLTPD1, CPTP	Glycolipid transfer protein domain-containing protein 1	CPTP	80772	ENSG00000224051			Cptp (MGI:1933107)
chr1	1331323	1335319	1p36.33	1p36.33	605865	TAS1R3, T1R3	Taste receptor type 1, member 3	TAS1R3	83756	ENSG00000169962			Tas1r3 (MGI:1933547)
chr1	1335277	1349141	1p36	1p36.33	601365	DVL1, DRS2	Dishevelled 1 (homologous to Drosophila dsh)	DVL1	1855	ENSG00000107404		Robinow syndrome, autosomal dominant 2, 616331 (3), Autosomal dominant	Dvl1 (MGI:94941)
chr1	1352688	1363540	1p36.33	1p36.33	617293	MXRA8, ASP3	Matrix remodeling-associated protein 8	MXRA8	54587	ENSG00000162576			Mxra8 (MGI:1922011)
chr1	1373729	1375515	1p36.3	1p36.33	609183	AURKAIP1, AKIP, AIP	Aurora kinase A-interacting protein 1	AURKAIP1	54998	ENSG00000175756			Aurkaip1 (MGI:1913327)
chr1	1385710	1399341	1p36.33	1p36.33	613482	CCNL2	Cyclin L2	CCNL2	81669	ENSG00000221978			Ccnl2 (MGI:1927119)
chr1	1401895	1407312	1p36.3-p35.2	1p36.33	611833	MRPL20	Mitochondrial ribosomal protein L20	MRPL20	55052	ENSG00000242485			Mrpl20 (MGI:2137221)
chr1	1435522	1442881	1p36.3	1p36.33	611901	VWA1, WARP	von Willebrand factor A domain-containing protein 1	VWA1	64856	ENSG00000179403			Vwa1 (MGI:2179729)
chr1	1449688	1470157	1p36.33	1p36.33	617227	ATAD3C	ATPase family, AAA domain-containing, member 3C	ATAD3C	219293	ENSG00000215915			
chr1	1471731	1509465	1p36.33	1p36.33	612317	ATAD3B, TOB3, KIAA1273	ATPase family, AAA domain-containing, member 3B	ATAD3B	83858	ENSG00000160072			
chr1	1512142	1534686	1p36.33	1p36.33	612316	ATAD3A, HAYOS	ATPase family, AAA domain-containing, member 3A	ATAD3A	55210	ENSG00000197785	one family with AR inheritance reported	Harel-Yoon syndrome, 617183 (3), Autosomal recessive, Autosomal dominant	Atad3a (MGI:1919214)
chr1	1534777	1540359	1p36.33	1p36.33	616101	TMEM240, C1orf70, SCA21	Transmembrane protein 240	TMEM240	339453	ENSG00000205090		Spinocerebellar ataxia 21, 607454 (3), Autosomal dominant	Tmem240 (MGI:3648074)
chr1	1541672	1574881	1p36.33	1p36.33	617680	SSU72	Ssu72, S. cerevisiae, homolof of	SSU72	29101	ENSG00000160075			Ssu72 (MGI:1916241)
chr1	1613729	1630609	1p36.32	1p36.33	611141	MIB2	Mindbomb, Drosophila, homolog of, 2	MIB2	142678	ENSG00000197530			Mib2 (MGI:2679684)
chr1	1631680	1635637	1p36.3	1p36.33	603321	MMP23B, MMP22	Matrix metalloproteinase 23B	MMP23B	8510	ENSG00000189409			Mmp23 (MGI:1347361)
chr1	1635225	1659618	1p36.3	1p36.33	176873	CDK11B, CDC2L1, P58, CDK11	Cyclin-dependent kinase 11B	CDK11B	984	ENSG00000248333			
chr1	1699938	1701807	1p36.3	1p36.33	603320	MMP23A, MMP21, MIFR	Matrix metalloproteinase 23A	MMP23A	8511				
chr1	1702382	1724564	1p36.3	1p36.33	116951	CDK11A, CDC2L2	Cyclin-dependent kinase 11A	CDK11A	728642	ENSG00000008128			Cdk11b (MGI:88353)
chr1	1751231	1780508	1p36.33-p36.21	1p36.33	611616	NADK	NAD kinase	NADK	65220	ENSG00000008130			Nadk (MGI:2183149)
chr1	1785284	1891116	1pter-p31.2	1p36.33	139380	GNB1, MRD42	Guanine nucleotide-binding protein, beta polypeptide-1	GNB1	2782	ENSG00000078369		Leukemia, acute lymphoblastic, somatic, 613065 (3); Mental retardation, autosomal dominant 42, 616973 (3), Autosomal dominant	Gnb1 (MGI:95781)
chr1	1913750	1917293	1p36.33	1p36.33	610171	CALML6, CAGLP	Calmodulin-like 6	CALML6	163688	ENSG00000169885			
chr1	2019328	2030752	1p36.3	1p36.33	137163	GABRD, GEFSP5, EIG10, EJM7	Gamma-aminobutyric acid (GABA) A receptor, delta	GABRD	2563	ENSG00000187730		{Epilepsy, generalized, with febrile seizures plus, type 5, susceptibility to}, 613060 (3), Autosomal dominant; {Epilepsy, idiopathic generalized, 10}, 613060 (3), Autosomal dominant; {Epilepsy, juvenile myoclonic, susceptibility to}, 613060 (3), Autosomal dominant	Gabrd (MGI:95622)
chr1	2050469	2185398	1p36	1p36.33	176982	PRKCZ, PKC2	Protein kinase C, zeta form	PRKCZ	5590	ENSG00000067606			Prkcz (MGI:97602)
chr1	2184456	2212719	1p36.33	1p36.33	615183	C1orf86, FAAP20	Chromosome 1 open reading frame 86	FAAP20	199990	ENSG00000162585			Faap20 (MGI:1914763)
chr1	2228694	2310212	1p36.3	1p36.33-p36.32	164780	SKI, SGS	Avian sarcoma viral (v-ski) oncogene homolog	SKI	6497	ENSG00000157933	formerly mapped to 1q22-q24	Shprintzen-Goldberg syndrome, 182212 (3), Autosomal dominant	Ski (MGI:98310)
chr1	2300000	20100000	1p36.32-p36.13		607671	DYT13	Dystonia 13, torsion	DYT13	93983			Dystonia 13, torsion, 607671 (2), Autosomal dominant	
chr1	2300000	29900000	1p36.32-p35.3		606242	KONDS	Kondoh syndrome (mental retardation, microcephaly, growth retardation, joint contractures, and facial dysmorphism)		100653373		linked to rs966321 and rs1441834	Kondoh syndrome, 606242 (2), Autosomal recessive	
chr1	2404801	2412573	1p36.32	1p36.32	602859	PEX10, NALD, PBD6A, PBD6B	Peroxisome biogenesis factor 10	PEX10	5192	ENSG00000157911		Peroxisome biogenesis disorder 6A (Zellweger), 614870 (3), Autosomal recessive; Peroxisome biogenesis disorder 6B, 614871 (3), Autosomal recessive	Pex10 (MGI:2684988)
chr1	2412480	2505529	1p36.32	1p36.32	612836	PLCH2, PLCL4	Phospholipase C, eta-2	PLCH2	9651	ENSG00000149527			Plch2 (MGI:2443078)
chr1	2508530	2526627	1p36	1p36.32	606162	PANK4	Pantothenate kinase 4	PANK4	55229	ENSG00000157881			Pank4 (MGI:2387466)
chr1	2528744	2530553	1p36.31	1p36.32	607348	HES5	Hairy/enhancer of split, Drosophila, homolog of, 5	HES5	388585	ENSG00000197921			Hes5 (MGI:104876)
chr1	2556364	2565621	1p36.3-p36.2	1p36.32	602746	TNFRSF14, HVEM, TR2	Tumor necrosis factor receptor superfamily, member 14 (herpesvirus entry mediator)	TNFRSF14	8764	ENSG00000157873			Tnfrsf14 (MGI:2675303)
chr1	3021481	3022902	1p36.32	1p36.32	608535	ACTRT2, ARPT2, ARPM2	Actin-related protein T2	ACTRT2	140625	ENSG00000169717			Actrt2 (MGI:1920603)
chr1	3068226	3438620	1p36.3	1p36.32	605557	PRDM16, MEL1, LVNC8, CMD1LL	PR domain-containing protein 16	PRDM16	63976	ENSG00000142611		Cardiomyopathy, dilated, 1LL, 615373 (3), Autosomal dominant; Left ventricular noncompaction 8, 615373 (3), Autosomal dominant	Prdm16 (MGI:1917923)
chr1	3487941	3624769	1p36.3	1p36.32	604266	MEGF6, EGFL3	Multiple epidermal growth factor-like domains 6	MEGF6	1953	ENSG00000162591			Megf6 (MGI:1919351)
chr1	3560694	3560789	1p36.32	1p36.32	615148	MIR551A	Micro RNA 551A	MIR551A	693135				
chr1	3624991	3630130	1p36.32	1p36.32	611460	TPRG1L, FAM79A	Tumor protein p63 regulated 1-like	TPRG1L	127262	ENSG00000158109			Tprgl (MGI:1915058)
chr1	3630766	3650106	1p36.3	1p36.32	606040	WDR8	WD repeat-containing protein 8	WRAP73	49856	ENSG00000116213			Wrap73 (MGI:1891749)
chr1	3652564	3736200	1p36	1p36.32	601990	TP73	p53-related protein	TP73	7161	ENSG00000078900	imprinted	?Neuroblastoma (1)	Trp73 (MGI:1336991)
chr1	3772760	3775981	1p36	1p36.32	615242	SMIM1, VEL	Small integral membrane protein 1	SMIM1	388588	ENSG00000235169		[Blood group, Vel system], 615264 (3), Autosomal recessive	Smim1 (MGI:1916109)
chr1	3812080	3857232	1p36.32	1p36.32	616690	CEP104, GLYBP, KIAA0562, JBTS25	Centrosomal protein, 104kD	CEP104	9731	ENSG00000116198		Joubert syndrome 25, 616781 (3), Autosomal recessive	Cep104 (MGI:2687282)
chr1	3857266	3885428	1p36.3	1p36.32	601883	DFFB, CAD, DFF2	DNA fragmentation factor, 40kD, beta subunit	DFFB	1677	ENSG00000169598			Dffb (MGI:1196287)
chr1	4654774	4792517	1p36.32	1p36.32	610972	AJAP1, SHREW1	Adherens junction-associated protein 1	AJAP1	55966	ENSG00000196581			Ajap1 (MGI:2685419)
chr1	5300000	20100000	1p36.31-p36.13		614414	DFNB96	Deafness, autosomal recessive 96	DFNB96	100861440		between rs3817914 and rs477558	Deafness, autosomal recessive 96, 614414 (2), Autosomal recessive	
chr1	5862807	5992472	1p36	1p36.31	607215	NPHP4, SLSN4	Nephrocystin 4	NPHP4	261734	ENSG00000131697		Nephronophthisis 4, 606966 (3), Autosomal recessive; Senior-Loken syndrome 4, 606996 (3), Autosomal recessive	Nphp4 (MGI:2384210)
chr1	5992297	6101192	1p36.3	1p36.31	601142	KCNAB2, KCNA2B	Potassium voltage-gated channel, shaker-related subfamily, beta member 2	KCNAB2	8514	ENSG00000069424			Kcnab2 (MGI:109239)
chr1	6101786	6180133	1p36	1p36.31	610771	CHD5	Chromodomain helicase DNA-binding protein 5	CHD5	26038	ENSG00000116254			Chd5 (MGI:3036258)
chr1	6185019	6199618	1p36.31	1p36.31	180474	RPL22, EAP	Ribosomal protein L22	RPL22	6146	ENSG00000116251	fused with AML1 in t(3;21)		Rpl22 (MGI:99262)
chr1	6206003	6221298	1p36.31	1p36.31	616923	RNF207, C1orf188	RING finger protein 207	RNF207	388591	ENSG00000158286			Rnf207 (MGI:2684989)
chr1	6221192	6235983	1p36	1p36.31	605851	ICMT	Isoprenylcysteine carboxylmethyltransferase	ICMT	23463	ENSG00000116237			Icmt (MGI:1888594)
chr1	6244191	6245577	1p36.31	1p36.31	609971	HES3	Hairy/enhancer of split, Drosophila, homolog of, 3	HES3	390992	ENSG00000173673			Hes3 (MGI:104877)
chr1	6247345	6260974	1p36.31	1p36.31	614269	GPR153	G protein-coupled receptor 153	GPR153	387509	ENSG00000158292			Gpr153 (MGI:1916157)
chr1	6264271	6393765	1p36	1p36.31	602587	ACOT7, BACH, LACH	Acyl-CoA thioesterase 7	ACOT7	11332	ENSG00000097021			Acot7 (MGI:1917275)
chr1	6415231	6419918	1p36.31	1p36.31	609970	HES2	Hairy/enhancer of split, Drosophila, homolog of, 2	HES2	54626	ENSG00000069812			Hes2 (MGI:1098624)
chr1	6424775	6461366	1p36.3-p36.1	1p36.31	606351	ESPN	Espin, mouse, homolog of	ESPN	83715	ENSG00000187017		Deafness, autosomal recessive 36, 609006 (3), Autosomal recessive; Deafness, neurosensory, without vestibular involvement, autosomal dominant (3)	Espn (MGI:1861630)
chr1	6461150	6466194	1p36.3	1p36.31	603366	TNFRSF25, TNFRSF12, DR3, LARD	Tumor necrosis factor receptor superfamily, member 25	TNFRSF25	8718	ENSG00000215788			Tnfrsf25 (MGI:1934667)
chr1	6466091	6520060	1p36	1p36.31	611101	PLEKHG5, KIAA0720, DSMA4, CMTRIC	Pleckstrin homology domain-containing protein, family G, member 5	PLEKHG5	57449	ENSG00000171680		Charcot-Marie-Tooth disease, recessive intermediate C, 615376 (3), Autosomal recessive; Spinal muscular atrophy, distal, autosomal recessive, 4, 611067 (3), Autosomal recessive	Plekhg5 (MGI:2652860)
chr1	6555277	6579756	1p36	1p36.31	606225	TAS1R1, T1R1	Taste receptor type 1, member 1	TAS1R1	80835	ENSG00000173662			Tas1r1 (MGI:1927505)
chr1	6579990	6589279	1p36.3	1p36.31	165270	ZBTB48, HKR3	Zinc finger- and BTB domain-containing protein 48	ZBTB48	3104	ENSG00000204859			Zbtb48 (MGI:2140248)
chr1	6590723	6602897	1p36.31	1p36.31	616262	KLHL21, KIAA0469	Kelch-like 21	KLHL21	9903	ENSG00000162413			Klhl21 (MGI:1919288)
chr1	6624615	6635585	1p36.31	1p36.31	612532	THAP3	THAP domain-containing protein 3	THAP3	90326	ENSG00000041988			Thap3 (MGI:1917126)
chr1	6634167	6701905	1p36.31-p36.23	1p36.31	614827	DNAJC11	DNAJ/HSP40 homolog, subfamily C, member 11	DNAJC11	55735	ENSG00000007923			Dnajc11 (MGI:2443386)
chr1	6785323	7769705	1p36	1p36.31-p36.23	611501	CAMTA1, KIAA0833, CANPMR	Calmodulin-binding transcription activator 1	CAMTA1	23261	ENSG00000171735		Cerebellar ataxia, nonprogressive, with mental retardation, 614756 (3), Autosomal dominant	Camta1 (MGI:2140230)
chr1	7100000	27600000	1p36.2-p36.1		600975	GLC3B	Glaucoma 3, primary infantile, B	GLC3B	2728			Glaucoma 3, primary infantile, B, 600975 (2), Autosomal recessive	
chr1	7100000	15900000	1p36.2		608543	SCZD12	Schizophrenia 12		619488		max lod at D1S1612	{Schizophrenia 12}, 181500 (2), Autosomal dominant	
chr1	7771268	7781431	1p36	1p36.23	603657	VAMP3	Vesicle-associated membrane protein 3	VAMP3	9341	ENSG00000049245			Vamp3 (MGI:1321389)
chr1	7784284	7845180	1p36.33-p36.21	1p36.23	603427	PER3, FASPS3	Period, Drosophila, homolog of, 3	PER3	8863	ENSG00000049246	mutation identified in 1 FASPS3 family	?Advanced sleep phase syndrome, familial, 3, 616882 (3), Autosomal dominant	Per3 (MGI:1277134)
chr1	7846344	7913614	1p36.23	1p36.23	604097	UTS2	Urotensin II	UTS2	10911	ENSG00000049247			Uts2 (MGI:1346329)
chr1	7915870	7943164	1p36	1p36.23	602250	TNFRSF9, ILA, CD137	Tumor necrosis factor receptor superfamily, member 9 (interleukin-activated receptor; Ly63, mouse, homolog of)	TNFRSF9	3604	ENSG00000049249			Tnfrsf9 (MGI:1101059)
chr1	7961653	7985281	1p36	1p36.23	602533	DJ1, PARK7	Oncogene DJ-1	PARK7	11315	ENSG00000116288		Parkinson disease 7, autosomal recessive early-onset, 606324 (3), Autosomal recessive	Park7 (MGI:2135637)
chr1	8011718	8026332	1p36	1p36.23	608069	MIG6, RALT	Mitogen-inducible gene 6	ERRFI1	54206	ENSG00000116285			Errfi1 (MGI:1921405)
chr1	8318084	8344166	1p36.2-p36.1	1p36.23	605763	SLC45A1, DNB5, IDDNPF	Solute carrier family 45, member 1	SLC45A1	50651	ENSG00000162426		Intellectual developmental disorder with neuropsychiatric features, 617532 (3), Autosomal recessive	Slc45a1 (MGI:2653235)
chr1	8352403	8826225	1p36.2-p36.1	1p36.23	605226	RERE, NEDBEH	RE repeats-encoding gene	RERE	473	ENSG00000142599		Neurodevelopmental disorder with or without anomalies of the brain, eye, or heart, 616975 (3), Autosomal dominant	Rere (MGI:2683486)
chr1	8861001	8878685	1pter-p36.13	1p36.23	172430	ENO1, PPH, MPB1	Enolase-1, alpha	ENO1	2023	ENSG00000074800		Enolase deficiency (1)	Eno1b,Eno1 (MGI:95393,MGI:3648653)
chr1	8945833	8975091	1p36.33-p36.22	1p36.23	114780	CA6	Carbonic anhydrase VI	CA6	765	ENSG00000131686			Car6 (MGI:1333786)
chr1	8992533	9026383	1p36.2	1p36.23	610371	SLC2A7, GLUT7	Solute carrier family 2 (facilitated glucose transporter), member 7	SLC2A7	155184	ENSG00000197241			Slc2a7 (MGI:3650865)
chr1	9036945	9072226	1p36.2	1p36.23	138230	SLC2A5, GLUT5	Solute carrier family 2 (facilitated glucose transporter), member 5	SLC2A5	6518	ENSG00000142583			Slc2a5 (MGI:1928369)
chr1	9151667	9151776	1p36	1p36.22	611172	MIR34A, MIRN34A	Micro RNA 34A	MIR34A	407040				
chr1	9234766	9271336	1p36	1p36.22	138090	H6PD, GDH, G6PDH, CORTRD1	Hexose-6-phosphate dehydrogenase	H6PD	9563	ENSG00000049239	digenic triallelic mutations with HSD11B1	Cortisone reductase deficiency 1, 604931 (3), Autosomal recessive	H6pd (MGI:2140356)
chr1	9292881	9369531	1p36.22	1p36.22	611657	SPSB, SSB1	SPRY domain- and SOCS box-containing 1	SPSB1	80176	ENSG00000171621			Spsb1 (MGI:1921896)
chr1	9539468	9582772	1p36.22	1p36.22	610816	SLC25A33	Solute carrier family 25 (mitochondrial carrier), member 33	SLC25A33	84275	ENSG00000171612			Slc25a33 (MGI:1917806)
chr1	9629888	9728924	1p36.2	1p36.22	602839	PIK3CD, APDS, IMD14	Phosphatidylinositol 3-kinase, catalytic, 110kD, delta	PIK3CD	5293	ENSG00000171608		Immunodeficiency 14, 615513 (3), Autosomal dominant	Pik3cd (MGI:1098211)
chr1	9729020	9824525	1p36	1p36.22	611321	CLSTN1, KIAA0911	Calsyntenin 1	CLSTN1	22883	ENSG00000171603			Clstn1 (MGI:1929895)
chr1	9848275	9910321	1p36.22	1p36.22	607758	CTNNBIP1, ICAT	Catenin, beta-interacting protein 1	CTNNBIP1	56998	ENSG00000178585			Ctnnbip1 (MGI:1915756)
chr1	9922112	9943426	1p36.22	1p36.22	610458	LZIC	Leucine zipper and CTNNBIP1 domains-containing protein	LZIC	84328	ENSG00000162441			Lzic (MGI:1916401)
chr1	9942922	9996883	1p36.22	1p36.22	608700	NMNAT1, NMNAT, PNAT1, LCA9	Nicotinamide nucleotide adenylyltransferase 1	NMNAT1	64802	ENSG00000173614		Leber congenital amaurosis 9, 608553 (3), Autosomal recessive	Nmnat1 (MGI:1913704)
chr1	10032957	10181238	1p36.3	1p36.22	613565	UBE4B, UFD2A, KIAA0684	Ubiquitination factor E4B	UBE4B	10277	ENSG00000130939			Ube4b (MGI:1927086)
chr1	10210705	10381602	1p36.2	1p36.22	605995	KIF1B, CMT2A, CMT2A1, NBLST1	Kinesin family member 1B	KIF1B	23095	ENSG00000054523	mutation identified in 1 CMT2A1 family	?Charcot-Marie-Tooth disease, type 2A1, 118210 (3), Autosomal dominant; {Neuroblastoma, susceptibility to, 1}, 256700 (3), Autosomal dominant, Isolated cases; Pheochromocytoma, 171300 (3), Autosomal dominant	Kif1b (MGI:108426)
chr1	10398991	10420510	1p36.2-p36.13	1p36.22	172200	PGD	6-phosphogluconate dehydrogenase	PGD	5226	ENSG00000142657			Pgd (MGI:97553)
chr1	10430101	10442814	1p36.22	1p36.22	609130	APITD1	Apoptosis-inducing, TAF9-like domain 1	CENPS	378708	ENSG00000175279			Cenps (MGI:1917178)
chr1	10449718	10452002	1p36	1p36.22	602784	CORT	Cortistatin	CORT	1325	ENSG00000241563			Cort (MGI:109538)
chr1	10460530	10472555	1p36.3-p36.2	1p36.22	601882	DFFA, DFF1	DNA fragmentation factor, 45kD, alpha subunit	DFFA	1676	ENSG00000160049			Dffa (MGI:1196227)
chr1	10474945	10630757	1p36.2	1p36.22	601791	PEX14, PBD13A	Peroxisome biogenesis factor 14	PEX14	5195	ENSG00000142655		Peroxisome biogenesis disorder 13A (Zellweger), 614887 (3), Autosomal recessive	Pex14 (MGI:1927868)
chr1	10636603	10796675	1p36.22	1p36.22	609895	CASZ1, SRG	Castor zinc finger protein 1	CASZ1	54897	ENSG00000130940			Casz1 (MGI:1196251)
chr1	11012621	11030527	1p36.2	1p36.22	605078	TARDBP, TDP43, ALS10	TAR DNA-binding protein	TARDBP	23435	ENSG00000120948	pseudogenes on 2, 6, 8, 13, 20	Amyotrophic lateral sclerosis 10, with or without FTD, 612069 (3), Autosomal dominant; Frontotemporal lobar degeneration, TARDBP-related, 612069 (3), Autosomal dominant	Tardbp (MGI:2387629)
chr1	11026522	11047238	1p36.3-p36.2	1p36.22	605102	MASP2	Mannan-binding lectin serine protease 2	MASP2	10747	ENSG00000009724		MASP2 deficiency, 613791 (3), Autosomal recessive	Masp2 (MGI:1330832)
chr1	11054591	11060052	1p36-p22	1p36.22	182891	SRM, SPS1	Spermidine synthase-1	SRM	6723	ENSG00000116649	?pseudogene on 3p14-q21		Srm (MGI:102690)
chr1	11066612	11099909	1p36.22	1p36.22	605960	EXOSC10, PMSCL2	Exosome component 10	EXOSC10	5394	ENSG00000171824			Exosc10 (MGI:1355322)
chr1	11106530	11273496	1p36.2	1p36.22	601231	MTOR, FRAP1, SKS	Mechanistic target of rapamycin	MTOR	2475	ENSG00000198793		Focal cortical dysplasia, type II, somatic, 607341 (3); Smith-Kingsmore syndrome, 616638 (3), Autosomal dominant	Mtor (MGI:1928394)
chr1	11273197	11299571	1p36.3	1p36.22	611632	UBIAD1, TERE1, SCCD	UbiA prenyltransferase domain-containing protein 1	UBIAD1	29914	ENSG00000120942		Corneal dystrophy, Schnyder type, 121800 (3), Autosomal dominant	Ubiad1 (MGI:1918957)
chr1	11479154	11537582	1p36.22	1p36.22	611251	PTCHD2, DISP3, KIAA1337	Patched domain-containing protein 2	DISP3	57540	ENSG00000204624			Disp3 (MGI:2444403)
chr1	11648360	11654830	1p36	1p36.22	607112	FBXO2, FBX2, FBG1, NFB42	F-box only protein 2	FBXO2	26232	ENSG00000116661			Fbxo2 (MGI:2446216)
chr1	11654374	11663326	1p36.21	1p36.22	609111	FBXO44, FBX44, FBX6A, FBG3	F-box only protein 44	FBXO44	93611	ENSG00000132879			Fbxo44 (MGI:1354744)
chr1	11664092	11674353	1p36.23	1p36.22	605647	FBXO6, FBX6, FBG2	F-box only protein 6	FBXO6	26270	ENSG00000116663			Fbxo6 (MGI:1354743)
chr1	11674479	11691620	1p36	1p36.22	604094	MAD2L2, MAD2B, FANCV	Mitotic arrest-deficient 2, S. cerevisiae, homolog-like 2	MAD2L2	10459	ENSG00000116670	mutation identified in 1 FANCV patient; pseudogene on 14q21-q23	?Fanconi anemia, complementation group V, 617243 (3), Autosomal recessive	Mad2l2 (MGI:1919140)
chr1	11686634	11721765	1p36.22	1p36.22	612682	DRAXIN, C1orf187	Dorsal repulsive axon guidance protein	DRAXIN	374946	ENSG00000162490			Draxin (MGI:1917683)
chr1	11785729	11806102	1p36.3	1p36.22	607093	MTHFR	Methylenetetrahydrofolate reductase	MTHFR	4524	ENSG00000177000		Homocystinuria due to MTHFR deficiency, 236250 (3), Autosomal recessive; {Neural tube defects, susceptibility to}, 601634 (3), Autosomal recessive; {Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant; {Thromboembolism, susceptibility to}, 188050 (3), Autosomal dominant; {Vascular disease, susceptibility to} (3)	Mthfr (MGI:106639)
chr1	11806095	11843143	1p36	1p36.22	602726	CLCN6	Chloride channel 6	CLCN6	1185	ENSG00000011021			Clcn6 (MGI:1347049)
chr1	11845708	11847782	1p36.2	1p36.22	108780	NPPA, PND, ANP, ATFB6, ATRST2	Natriuretic peptide precursor A	NPPA	4878	ENSG00000175206		Atrial fibrillation, familial, 6, 612201 (3), Autosomal dominant; Atrial standstill 2, 615745 (3), Autosomal recessive	Nppa (MGI:97367)
chr1	11857463	11858934	1p36.2	1p36.22	600295	NPPB, BNP	Natriuretic peptide precursor B	NPPB	4879	ENSG00000120937			
chr1	11934666	11975541	1p36.3-p36.2	1p36.22	153454	PLOD1, LH1, LLH, EDSKCL1	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase)	PLOD1	5351	ENSG00000083444		Ehlers-Danlos syndrome, kyphoscoliotic type, 1, 225400 (3), Autosomal recessive	Plod1 (MGI:99907)
chr1	11980180	12013514	1p36.2	1p36.22	608507	MFN2, KIAA0214, CMT2A2A, HMSN6A, CMT2A2B	Mitofusin 2	MFN2	9927	ENSG00000116688		Charcot-Marie-Tooth disease, axonal, type 2A2A, 609260 (3), Autosomal dominant; Charcot-Marie-Tooth disease, axonal, type 2A2B, 617087 (3), Autosomal recessive; Hereditary motor and sensory neuropathy VIA, 601152 (3), Autosomal dominant	Mfn2 (MGI:2442230)
chr1	12063316	12144212	1p36	1p36.22	153243	TNFRSF8, CD30, D1S166E	Tumor necrosis factor receptor superfamily, member 8 (CD30 antigen; Ki-1 antigen)	TNFRSF8	943	ENSG00000120949			Tnfrsf8 (MGI:99908)
chr1	12166947	12209221	1p36.3-p36.2	1p36.22	191191	TNFRSF1B, TNFR2, TNFBR	Tumor necrosis factor receptor superfamily, member 1B	TNFRSF1B	7133	ENSG00000028137			Tnfrsf1b (MGI:1314883)
chr1	12500000	15900000	1p36.21		609918	GBD2	Gallbladder disease 2	GBD2	100048905		between D1S1597 and D1S47	Gallbladder disease 2, 609918 (2)	
chr1	12567909	12617730	1p36.1	1p36.21	612830	DHRS3, RETSDR1	Short-chain dehydrogenase/reductase family, member 3	DHRS3	9249	ENSG00000162496			Dhrs3 (MGI:1315215)
chr1	13474976	13513746	1p36.21	1p36.21	615212	LRRC38	Leucine-rich repeat-containing protein 38	LRRC38	126755	ENSG00000162494			Lrrc38 (MGI:2442845)
chr1	13583756	13617956	1p36.21	1p36.21	608863	PDPN, TI1A, T1A2, GP36, OTS8, AGGRUS	Podoplanin	PDPN	10630	ENSG00000162493			Pdpn (MGI:103098)
chr1	13698873	13825078	1p36	1p36.21	601196	PRDM2, RIZ	PR domain-containing protein 2 (retinoblastoma protein-binding zinc-finger protein RIZ)	PRDM2	7799	ENSG00000116731			Prdm2 (MGI:107628)
chr1	15409894	15430342	1p36.21	1p36.21	616450	EFHD2, SWS1	EF-hand domain family, member D2	EFHD2	79180	ENSG00000142634			Efhd2 (MGI:106504)
chr1	15438441	15449246	1p36.21	1p36.21	601405	CTRC, CLCR	Chymotrypsin	CTRC	11330	ENSG00000162438		{Pancreatitis, chronic, susceptibility to}, 167800 (3), Autosomal dominant	Ctrc (MGI:1923951)
chr1	15456727	15472090	1p36.2	1p36.21	609443	CELA2A, ELA2A	Chymotrypsin-like elastase family, member 2A	CELA2A	63036	ENSG00000142615			Cela2a (MGI:95316)
chr1	15476100	15491399	1p36.2	1p36.21	609444	CELA2B, ELA2B	Chymotrypsin-like elastase family, member 2B	CELA2B	51032	ENSG00000215704			
chr1	15491400	15524911	1p36.3-p36.1	1p36.21	602234	CASP9, APAF3	Caspase 9, apoptosis-related cysteine protease	CASP9	842	ENSG00000132906			Casp9 (MGI:1277950)
chr1	15571698	15585109	1p36.21	1p36.21	617887	AGMAT, AUH	Agmatinase	AGMAT	79814	ENSG00000116771			Agmat (MGI:1923236)
chr1	15659712	15662029	1p36.1	1p36.21	601966	RSC1A1, RS1	Regulatory solute carrier protein, family 1, member 1	RSC1A1	6248	ENSG00000215695			Rsc1a1 (MGI:3526447)
chr1	15681505	15734768	1p36.21	1p36.21	609613	PLEKHM2, SKIP, KIAA0842	Pleckstrin homology domain-containing protein, family M, member 2	PLEKHM2	23207	ENSG00000116786			Plekhm2 (MGI:1916832)
chr1	15735087	15741391	1p36.21	1p36.21	610817	SLC25A34	Solute carrier family 25, member 34	SLC25A34	284723	ENSG00000162461			Slc25a34 (MGI:2686215)
chr1	15756169	15786593	1p36.13	1p36.21	607747	FBLP1, MIGFILIN	Filamin-binding LIM protein 1	FBLIM1	54751	ENSG00000162458			Fblim1 (MGI:1921452)
chr1	15847863	15940454	1p36.13	1p36.21-p36.13	613484	SPEN, MINT, SHARP, HIAA0929	SPEN, Drosophila, homolog of	SPEN	23013	ENSG00000065526			Spen (MGI:1891706)
chr1	15900000	39600000	1p36.13-p34.3		609122	ANIB3	Aneurysm, intracranial berry, 3	ANIB3	497657			Aneurysm, intracranial berry, 3, 609122 (2), Autosomal dominant	
chr1	15900000	39600000	1p36.13-p34.3		616055	EA8	Episodic ataxia, type 8		104326187		between rs2743201 and rs215791	Episodic ataxia, type 8, 616055 (2), Autosomal dominant	
chr1	15900000	34300000	1p36.1-p35		601201	MEMO1	Methylation modifier for class I HLA		7795				
chr1	15939932	15976131	1p36.2-p36.1	1p36.13	604084	ZBTB17, ZNF151, MIZ1	Zinc finger- and BTB domain-containing protein 17	ZBTB17	7709	ENSG00000116809			Zbtb17 (MGI:107410)
chr1	16014027	16019593	1p36.23-p34.3	1p36.13	610692	HSPB7, CVHSP	Heat-shock 27kD protein 7	HSPB7	27129	ENSG00000173641			Hspb7 (MGI:1352494)
chr1	16021990	16034049	1p36	1p36.13	602024	CLCNKA	Chloride channel, kidney, A	CLCNKA	1187	ENSG00000186510	11kb from CLCNKB; simultaneous mutation in CLCNKA and CLCNKB	Bartter syndrome, type 4b, digenic, 613090 (3), Digenic recessive	Clcnkb (MGI:1930643)
chr1	16043735	16057325	1p36	1p36.13	602023	CLCNKB	Chloride channel, kidney, B	CLCNKB	1188	ENSG00000184908	unequal crossingover with CLCNKA	Bartter syndrome, type 3, 607364 (3), Autosomal recessive; Bartter syndrome, type 4b, digenic, 613090 (3), Digenic recessive	Clcnka (MGI:1329026)
chr1	16124336	16156108	1p36.1	1p36.13	176946	EPHA2, ECK, CTPP1, CTPA, ARCC2, CTRCT6	Ephrin receptor EphA2	EPHA2	1969	ENSG00000142627		Cataract 6, multiple types, 116600 (3), Autosomal dominant	Epha2 (MGI:95278)
chr1	16197853	16212699	1p36.13	1p36.13	612496	ARHGEF19, WGEF	RHO guanine nucleotide exchange factor 19	ARHGEF19	128272	ENSG00000142632			Arhgef19 (MGI:1925912)
chr1	16246839	16352490	1p36.23-p36.11	1p36.13	609109	FBXO42, FBX42, KIAA1332	F-box only protein 42	FBXO42	54455	ENSG00000037637			Fbxo42 (MGI:1924992)
chr1	16440671	16460089	1p36.13	1p36.13	611624	NECAP2	NECAP endocytosis-associated protein 2	NECAP2	55707	ENSG00000157191			Necap2 (MGI:1913397)
chr1	16545938	16546008	Chr.16	1p36.13	189911	TRNAG1, TRG1	tRNA glycine-1		7195				
chr1	16562426	16613604	1p36.2	1p36.13	610501	NBPF1, KIAA1693	Neuroblastoma breakpoint family, member 1	NBPF1	55672		pseudogenes on 3 and 5		
chr1	16740515	16740678	1p36.3	1p36.13	180680	RNU1A, RNU1	RNA, U1A small nuclear	RNU1-4	6060		?same as A12M2		
chr1	16872582	16872653	1p36	1p36.13	180640	TRNAE1, TRNE, TRE	tRNA glutamic acid	TRE-TTC3-1	7193				
chr1	16914081	16972978	1p36.11	1p36.13	615776	CROCC, ROOTLETIN, KIAA0445	Ciliary rootlet coiled-coil protein	CROCC	9696	ENSG00000058453			Crocc (MGI:3529431)
chr1	16974501	16981585	1p36.1-p35	1p36.13	156790	MFAP2, MAGP, MAGP1	Microfibrillar-associated protein-2	MFAP2	4237	ENSG00000117122			Mfap2 (MGI:99559)
chr1	16985957	17011971	1p36	1p36.13	610513	ATP13A2, PARK9, KRPPD, SPG78	ATPase, type 13A2	ATP13A2	23400	ENSG00000159363	mutation identified in 1 family with CLN12	Kufor-Rakeb syndrome, 606693 (3), Autosomal recessive; Spastic paraplegia 78, autosomal recessive, 617225 (3), Autosomal recessive	Atp13a2 (MGI:1922022)
chr1	17018721	17054169	1p36.1-p35	1p36.13	185470	SDHB, SDH2, SDHIP, PGL4, CWS2	Succinate dehydrogenase complex, subunit B, iron sulfur (Ip)	SDHB	6390	ENSG00000117118	1 of 2 polypeptides	Cowden syndrome 2, 612359 (3), Autosomal dominant; Gastrointestinal stromal tumor, 606764 (3), Autosomal dominant, Isolated cases; Paraganglioma and gastric stromal sarcoma, 606864 (3); Paragangliomas 4, 115310 (3), Autosomal dominant; Pheochromocytoma, 171300 (3), Autosomal dominant	Sdhb (MGI:1914930)
chr1	17066760	17119452	1p36.13	1p36.13	607935	PADI2	Peptidylarginine deiminase, type II	PADI2	11240	ENSG00000117115			Padi2 (MGI:1338892)
chr1	17205124	17246005	1p36.13	1p36.13	607934	PADI1	Peptidylarginine deiminase, type I	PADI1	29943	ENSG00000142623			Padi1 (MGI:1338893)
chr1	17249078	17284232	1p36.13	1p36.13	606755	PADI3, UHS1	Peptidylarginine deiminase, type III	PADI3	51702	ENSG00000142619		Uncombable hair syndrome, 191480 (3), Autosomal recessive	Padi3 (MGI:1338891)
chr1	17308194	17364003	1p36.13	1p36.13	605347	PADI4, PADI5, PAD	Peptidylarginine deiminase, type IV	PADI4	23569	ENSG00000159339		{Rheumatoid arthritis, susceptibility to}, 180300 (3)	Padi4 (MGI:1338898)
chr1	17372195	17401698	1p36.13	1p36.13	610363	PADI6, PREMBL2	Peptidylarginine deiminase, type VI	PADI6	353238	ENSG00000276747		Preimplantation embryonic lethality 2, 617234 (3), Autosomal recessive	Padi6 (MGI:2655198)
chr1	17513441	17697874	1p36.13	1p36.13	612494	ARHGEF10L, GRINCHGEF, KIAA1626	RHO guanine nucleotide exchange factor 10-like protein	ARHGEF10L	55160	ENSG00000074964			Arhgef10l (MGI:1920004)
chr1	18631005	18748865	1p36.2-p36.12	1p36.13	167410	PAX7, RMS2	Paired box homeotic gene-7	PAX7	5081	ENSG00000009709	fused with FKHR in rhabdomyosarcoma	Rhabdomyosarcoma 2, alveolar, 268220 (3), Autosomal recessive	Pax7 (MGI:97491)
chr1	18839598	18859660	1p36	1p36.13	606226	TAS1R2, T1R2	Taste receptor type 1, member 2	TAS1R2	80834	ENSG00000179002			Tas1r2 (MGI:1933546)
chr1	18871429	18902798	1p36	1p36.13	606811	ALDH4A1, ALDH4, P5CDH	Aldehyde dehydrogenase 4 family, member A1 (delta-1-pyrroline 5-carboxylate dehydrogenase)	ALDH4A1	8659	ENSG00000159423		Hyperprolinemia, type II, 239510 (3), Autosomal recessive	Aldh4a1 (MGI:2443883)
chr1	19074505	19214331	1p36.13	1p36.13	609890	UBR4, ZUBR1, RBAF600, KIAA1307	Ubiquitin protein ligase E3 component n-recognin 4	UBR4	23352	ENSG00000127481			Ubr4 (MGI:1916366)
chr1	19215663	19251558	1p36.13	1p36.13	616846	EMC1, KIAA0090, CAVIPMR	Endoplasmic reticulum membrane protein complex, subunit 1	EMC1	23065	ENSG00000127463		Cerebellar atrophy, visual impairment, and psychomotor retardation, 616875 (3), Autosomal recessive	Emc1 (MGI:2443696)
chr1	19259319	19274167	1p36.13	1p36.13	608478	AKR7A4, AFAR3	Aldo-keto reductase family 7, member A4	AKR7L	246181				
chr1	19274228	19289361	1p36.13	1p36.13	608477	AKR7A3, AFAR2	Aldo-keto reductase family 7, member A3	AKR7A3	22977	ENSG00000162482			
chr1	19302707	19312145	1p36.13	1p36.13	603418	AKR7A2, AKR7, AFAR	Aldo-keto reductase family 7, member A2	AKR7A2	8574	ENSG00000053371	pseudogenes on Xq25 and 1p12		Akr7a5 (MGI:107796)
chr1	19312245	19332610	1p36.13	1p36.13	614760	PQLC2	PQ loop repeat-containing protein 2	PQLC2	54896	ENSG00000040487			Pqlc2 (MGI:2384837)
chr1	19338772	19485640	1p36.1	1p36.13	601572	CAPZB, CAPPB	Capping protein (actin filament) muscle Z-line, beta	CAPZB	832	ENSG00000077549			Capzb (MGI:104652)
chr1	19596976	19629820	1p36.13	1p36.13	616574	MINOS1, MIO10, MIC10	Mitochondrial inner membrane organizing system protein 1	MINOS1	440574	ENSG00000173436			Minos1 (MGI:1913628)
chr1	19643228	19658455	1p36.13-p36.11	1p36.13	600613	D1S1733E, DAN	Differential-screening-selected gene aberrant in neuroblastoma	NBL1	4681	ENSG00000158747	aberrant in some neuroblastomas		Nbl1 (MGI:104591)
chr1	19665286	19680965	1p36-p35	1p36.13	601109	HTR6	5-hydroxytryptamine (serotonin) receptor-6	HTR6	3362	ENSG00000158748			Htr6 (MGI:1196627)
chr1	19814028	19815277	1p36.13	1p36.13	617163	RNF186	Ring finger protein 186	RNF186	54546	ENSG00000178828			Rnf186 (MGI:1914075)
chr1	19881707	19912944	1p36.13	1p36.13	611758	OTUD3, KIAA0459	OTU domain-containing protein 3	OTUD3	23252	ENSG00000169914			Otud3 (MGI:1920412)
chr1	19975430	19980438	1p35	1p36.13	172411	PLA2G2A, PLA2B, PLA2L, MOM1	Phospholipase A2, group IIA, platelets, synovial fluid	PLA2G2A	5320	ENSG00000188257		{Colorectal cancer}, 114500 (3), Autosomal dominant	
chr1	20028348	20091900	1p36-p34	1p36.13	601192	PLA2G5, FRFB	Phospholipase A2, group V	PLA2G5	5322	ENSG00000127472		[Fleck retina, familial benign], 228980 (3), Autosomal recessive	Pla2g5 (MGI:101899)
chr1	20100000	23600000	1p36.12		612957	B6QTL1	Vitamin B6 plasma level QTL 1		100302718		associated with rs4654748	{Vitamin B6 plasma level QTL 1}, 612957 (2)	
chr1	20100000	34300000	1p36.12-p35.1		612627	BFIS4, BFIC4	Seizures, benign familial infantile, 4		100271922		between D1S2864 and D1S2830	Seizures, benign familial infantile, 4, 612627 (2)	
chr1	20112649	20119565	1p36.12	1p36.12	605630	PLA2G2D, SPLASH	Phospholipase A2, group IID	PLA2G2D	26279	ENSG00000117215			Pla2g2d (MGI:1341796)
chr1	20139325	20150385	1p35	1p36.12	616793	PLA2G2F	Phospholipase A2, group IIf	PLA2G2F	64600	ENSG00000158786			Pla2g2f (MGI:1349661)
chr1	20183006	20196047	1p36.12	1p36.12	616783	UBXN10	UBX domain protein 10	UBXN10	127733	ENSG00000162543			Ubxn10 (MGI:2443123)
chr1	20482390	20486234	1p36.12	1p36.12	614986	CAMK2N1	Calcium/calmodulin-dependent protein kinase II inhibitor 1	CAMK2N1	55450	ENSG00000162545			Camk2n1 (MGI:1913509)
chr1	20499447	20508482	1p36.12	1p36.12	612037	MUL1, MULAN, C1orf166	Mitochondrial ubiquitin ligase activator of NFKB1	MUL1	79594	ENSG00000090432			Mul1 (MGI:1915600)
chr1	20588950	20618907	1p36.2-p35	1p36.12	123920	CDA	Cytidine deaminase	CDA	978	ENSG00000158825			Cda (MGI:1919519)
chr1	20633454	20651510	1p36	1p36.12	608309	PINK1, PARK6	PTEN-induced putative kinase 1	PINK1	65018	ENSG00000158828		Parkinson disease 6, early onset, 605909 (3), Autosomal recessive	Pink1 (MGI:1916193)
chr1	20651766	20661543	1p36.1	1p36.12	602202	DDOST, OST, OST48, CDG1R	Dolichyl-diphosphooligosaccharide-protein glycosyltransferase	DDOST	1650	ENSG00000244038	mutation (cmpd het) identified in 1 CDG1R patient	?Congenital disorder of glycosylation, type Ir, 614507 (3), Autosomal recessive	Ddost (MGI:1194508)
chr1	20664013	20718016	1p36.12	1p36.12	605037	KIF17, KIAA1405	Kinesin family member 17	KIF17	57576	ENSG00000117245			Kif17 (MGI:1098229)
chr1	20742676	20787807	1p36.12	1p36.12	616072	HP1BP3, HP1BP74	Heterochromatin protein 1-binding protein 3	HP1BP3	50809	ENSG00000127483			Hp1bp3 (MGI:109369)
chr1	20806291	21176887	1p36.12	1p36.12	603929	EIF4G3, EIF4GII	Eukaryotic translation initiation factor 4-gamma, 3	EIF4G3	8672	ENSG00000075151			Eif4g3 (MGI:1923935)
chr1	21217246	21345540	1p36.1	1p36.12	600423	ECE1	Endothelin converting enzyme 1	ECE1	1889	ENSG00000117298	mutation identified in 1 HCAD patient	?Hirschsprung disease, cardiac defects, and autonomic dysfunction, 613870 (3), Autosomal dominant; {Hypertension, essential, susceptibility to}, 145500 (3), Multifactorial	Ece1 (MGI:1101357)
chr1	21436774	21484899	1p36.2	1p36.12	612992	NBPF3	Neuroblastoma breakpoint family, member 3	NBPF3	84224	ENSG00000142794			
chr1	21508981	21578411	1p36.1-p34	1p36.12	171760	ALPL, HOPS, TNSALP	Alkaline phosphatase, liver/bone/kidney	ALPL	249	ENSG00000162551		Hypophosphatasia, adult, 146300 (3), Autosomal recessive, Autosomal dominant; Hypophosphatasia, childhood, 241510 (3), Autosomal recessive; Hypophosphatasia, infantile, 241500 (3), Autosomal recessive; Odontohypophosphatasia, 146300 (3), Autosomal recessive, Autosomal dominant	Alpl (MGI:87983)
chr1	21596220	21669443	1p36.1-p35	1p36.12	600278	RAP1GA1	RAP1, GTPase activating protein 1	RAP1GAP	5909	ENSG00000076864			Rap1gap (MGI:109338)
chr1	21678578	21784145	1p36	1p36.12	617445	USP48, USP31	Ubiquitin-specific peptidase 48	USP48	84196	ENSG00000090686			Usp48 (MGI:2158502)
chr1	21822231	21937296	1p36.1	1p36.12	142461	HSPG2, PLC, SJS, SJA, SJS1	Heparan sulfate proteoglycan of basement membrane (perlecan)	HSPG2	3339	ENSG00000142798		Dyssegmental dysplasia, Silverman-Handmaker type, 224410 (3), Autosomal recessive; Schwartz-Jampel syndrome, type 1, 255800 (3), Autosomal recessive	Hspg2 (MGI:96257)
chr1	22052626	22092942	1p36.1	1p36.12	116952	CDC42, TKS	Cell division cycle 42 (GTP-binding protein, 25kD)	CDC42	998	ENSG00000070831		Takenouchi-Kosaki syndrome, 616737 (3), X-linked dominant	
chr1	22117304	22143980	1p35	1p36.12	603490	WNT4, SERKAL	Wingless-type MMTV integration site family, member 4	WNT4	54361	ENSG00000162552	mutation identified in 1 SERKAL family	Mullerian aplasia and hyperandrogenism, 158330 (3), Autosomal dominant; ?SERKAL syndrome, 611812 (3), Autosomal recessive	Wnt4 (MGI:98957)
chr1	22428837	22531156	1p36	1p36.12	612106	ZBTB40, KIAA0478	Zinc finger- and BTB domain-containing protein 40	ZBTB40	9923	ENSG00000184677			Zbtb40 (MGI:2682254)
chr1	22563501	22603593	1p36.12	1p36.12	176945	EPHA8, EEK, HEK3	Ephrin receptor EphA8 (eph- and elk-related kinase)	EPHA8	2046	ENSG00000070886			Epha8 (MGI:109378)
chr1	22636505	22639681	1p36.3-p34.1	1p36.12	120550	C1QA	Complement component 1, q subcomponent, A chain	C1QA	712	ENSG00000173372		C1q deficiency, 613652 (3), Autosomal recessive	C1qa (MGI:88223)
chr1	22643616	22648110	1p36.3-p34.1	1p36.12	120575	C1QC, C1QG	Complement component 1, q subcomponent, C chain	C1QC	714	ENSG00000159189		C1q deficiency, 613652 (3), Autosomal recessive	C1qc (MGI:88225)
chr1	22652980	22661636	1p36.3-p34.1	1p36.12	120570	C1QB	Complement component 1, q subcomponent, B chain	C1QB	713	ENSG00000173369		C1q deficiency, 613652 (3), Autosomal recessive	C1qb (MGI:88224)
chr1	22710769	22921499	1p36.1-p35	1p36.12	600997	EPHB2, EPHT3, DRT, ERK, PCBC, CAPB	eph tyrosine kinase 3 (ephrin receptor EphB2)	EPHB2	2048	ENSG00000133216		{Prostate cancer/brain cancer susceptibility, somatic}, 603688 (3)	Ephb2 (MGI:99611)
chr1	23019442	23083690	1p36.12	1p36.12	609132	KDM1A, LSD1, AOF2, BHC110, KIAA0601, CPRF	Lysine-specific demethylase 1A	KDM1A	23028	ENSG00000004487		Cleft palate, psychomotor retardation, and distinctive facial features, 616728 (3), Autosomal dominant	Kdm1a (MGI:1196256)
chr1	23084022	23177807	1p36	1p36.12	601422	LUZP1	Leucine zipper protein 1	LUZP1	7798	ENSG00000169641			Luzp1 (MGI:107629)
chr1	23191894	23194728	1p36.3-p34.3	1p36.12	182133	HTR1D	5-hydroxytryptamine (serotonin) receptor-1D	HTR1D	3352	ENSG00000179546			Htr1d (MGI:96276)
chr1	23304687	23344363	1p36.11	1p36.12	607201	HNRPR, HNRNPR	Heterogeneous nuclear ribonucleoprotein R	HNRNPR	10236	ENSG00000125944			Hnrnpr (MGI:1891692)
chr1	23359447	23369863	1p36	1p36.12	611703	ZNF436, KIAA1710	Zinc finger protein 436	ZNF436	80818	ENSG00000125945			Zfp46 (MGI:99192)
chr1	23380908	23424778	1p36.12	1p36.12	604128	TCEA3	Transcription elongation factor A, 3	TCEA3	6920	ENSG00000204219			Tcea3 (MGI:1196908)
chr1	23428562	23484630	1p36.13	1p36.12	616594	ASAP3, UPLC1, CENTB6, DDEFL1, ACAP4	ARF GTPase-activating protein with SH3 domain, ankyrin repeat, and PH domain 3	ASAP3	55616	ENSG00000088280			Asap3 (MGI:2684986)
chr1	23505695	23531249	1p36	1p36.12	600426	E2F2	E2F transcription factor 2	E2F2	1870	ENSG00000007968			E2f2 (MGI:1096341)
chr1	23557929	23559793	1p36.13-p36.12	1p36.12	600277	ID3	Inhibitor of DNA binding 3, dominant negative, helix-loop-helix protein	ID3	3399	ENSG00000117318			Id3 (MGI:96398)
chr1	23626952	23640567	1p36.1	1p36.11	607305	MDS2	Myelodysplasia syndrome gene 2	MDS2	259283		fused with ETV6 in myelodysplastic syndrome		
chr1	23691778	23696834	1p36.1-p35	1p36.11	604175	RPL11, DBA7	Ribosomal protein L11	RPL11	6135	ENSG00000142676		Diamond-Blackfan anemia 7, 612562 (3), Autosomal dominant	Rpl11 (MGI:1914275)
chr1	23743365	23762058	1p36.1	1p36.11	600786	TCEB3	Transcription elongation factor B (SIII), polypeptide 3 (110kD, elongin A)	ELOA	6924	ENSG00000011007			Eloa (MGI:1351315)
chr1	23790788	23795538	1p36.11	1p36.11	616143	LYPLA2, APT2	Lysophospholipase II	LYPLA2	11313	ENSG00000011009			Lypla2 (MGI:1347000)
chr1	23795598	23800803	1p36-p35	1p36.11	606953	GALE	UDP galactose-4-epimerase	GALE	2582	ENSG00000117308		Galactose epimerase deficiency, 230350 (3), Autosomal recessive	Gale (MGI:1921496)
chr1	23801876	23825458	1pter-p33	1p36.11	613898	HMGCL	3-hydroxy-3-methylglutaryl-Coenzyme A lyase	HMGCL	3155	ENSG00000117305		HMG-CoA lyase deficiency, 246450 (3), Autosomal recessive	Hmgcl (MGI:96158)
chr1	23845076	23868368	1p34	1p36.11	612280	FUCA1	Fucosidase, alpha-L- 1, tissue	FUCA1	2517	ENSG00000179163	8cM distal to RH; pseudogene on 2q31-q32	Fucosidosis, 230000 (3), Autosomal recessive	Fuca1 (MGI:95593)
chr1	23873074	23913326	1p36	1p36.11	605051	CNR2, CB2, CX5	Cannabinoid receptor 2	CNR2	1269	ENSG00000188822			Cnr2 (MGI:104650)
chr1	23959163	23963461	1p36.11	1p36.11	611882	PNRC2	Proline-rich nuclear receptor coactivator 2	PNRC2	55629	ENSG00000189266			Pnrc2 (MGI:106512)
chr1	23964346	23980462	1p36.1	1p36.11	605221	SRSF10, FUSIP1, TASR, TASR1, TASR2	Splicine factor, serine/arginine-rich, 10	SRSF10	10772	ENSG00000188529	pseudogenes on chr. 9, 12, 20		Srsf10 (MGI:1333805)
chr1	24056040	24112174	1p36.11	1p36.11	616832	MYOM3	Myomesin 3	MYOM3	127294	ENSG00000142661			Myom3 (MGI:2685280)
chr1	24154155	24187294	1p36.11	1p36.11	607404	IFNLR1, IL28RA	Interferon, lambda receptor 1	IFNLR1	163702	ENSG00000185436			Ifnlr1 (MGI:2429859)
chr1	24319321	24364481	1p36.11	1p36.11	608317	GRHL3, SOM, TFCP2L4, VWS2	Grainyhead-like 3	GRHL3	57822	ENSG00000158055		Van der Woude syndrome 2, 606713 (3), Autosomal dominant	Grhl3 (MGI:2655333)
chr1	24356998	24415532	1p36.11	1p36.11	615826	STPG1, MAPO2, C1orf201	Sperm-tail PG-rich repeat-containing protein 1	STPG1	90529	ENSG00000001460			Stpg1 (MGI:1926056)
chr1	24502350	24537019	1p35.2-p33	1p36.11	605860	RCAN3, DSCR1L2, MCIP3	Regulator of calcineurin 3	RCAN3	11123	ENSG00000117602			Rcan3 (MGI:1858220)
chr1	24643102	24673280	1p36.11	1p36.11	605975	SRRM1, SRM160	Serine/arginine repetitive matrix 1 (ser/arg-related nuclear matrix protein, 160kD)	SRRM1	10250	ENSG00000133226			
chr1	24899510	24965157	1p36	1p36.11	600210	RUNX3, CBFA3, PEBP2A3, AML2	Runt-related transcription factor 3	RUNX3	864	ENSG00000020633			Runx3 (MGI:102672)
chr1	25222275	25232521	1p36.11	1p36.11	607090	SYF2, P29	SYF2 RNA splicing factor, S. cerevisiae, homolog of	SYF2	25949	ENSG00000117614			Syf2 (MGI:1915842)
chr1	25272392	25330444	1p36.2-p34	1p36.11	111680	RHD	Rhesus system D polypeptide	RHD	6007	ENSG00000187010		[Rh-negative blood type] (3)	Rhd (MGI:1202882)
chr1	25338297	25362360	1p36.11	1p36.11	605348	TMEM50A, SMP1	Transmembrane protein 50A	TMEM50A	23585	ENSG00000183726	between RHD and RHCE		Tmem50a (MGI:1919067)
chr1	25360658	25430192	1p36.2-p34	1p36.11	111700	RHCE	Rhesus system C and E polypeptides	RHCE	6006	ENSG00000188672	?order: C-E-D	[Blood group, Rhesus], 111690 (3); Rh-null disease, amorph type (3)	Rhd (MGI:1202882)
chr1	25430857	25500208	1p36.11	1p36.11	610301	TMEM57, FLJ10747	Transmembrane protein 57	MACO1	55219	ENSG00000204178			Tmem57 (MGI:1913396)
chr1	25543584	25590399	1p36-p35	1p36.11	605747	LDLRAP1, ARH, FHCB2, FHCB1	Low density lipoprotein receptor adaptor protein 1	LDLRAP1	26119	ENSG00000157978		Hypercholesterolemia, familial, autosomal recessive, 603813 (3), Autosomal recessive	Ldlrap1 (MGI:2140175)
chr1	25616819	25786206	1p36.13-p35.1	1p36.11	616772	MAN1C1	Mannosidase, alpha, class 1C, member 1	MAN1C1	57134	ENSG00000117643			Man1c1 (MGI:2446214)
chr1	25800175	25818221	1p36-p35	1p36.11	606210	SELENON, SEPN1, SELN, RSMD1, CFTD	Selenoprotein N	SELENON	57190	ENSG00000162430		Muscular dystrophy, rigid spine, 1, 602771 (3), Autosomal recessive; Myopathy, congenital, with fiber-type disproportion, 255310 (3), Autosomal recessive, Autosomal dominant	Selenon (MGI:2151208)
chr1	25861483	25876706	1p36.11	1p36.11	607779	PAQR7, MPRA, PGLP	Progestin and ADIPOQ receptor family, member 7	PAQR7	164091	ENSG00000182749			Paqr7 (MGI:1919154)
chr1	25884185	25906876	1p36.1-p35	1p36.11	151442	STMN1, LAP18, SMN	Stathmin	STMN1	3925	ENSG00000117632			Stmn1 (MGI:96739)
chr1	25959763	25998163	1p36.11	1p36.11	602344	PAFAH2	Platelet-activating factor acetylhydrolase 2	PAFAH2	5051	ENSG00000158006			Pafah2 (MGI:2140321)
chr1	26021774	26036463	1p36.1	1p36.11	601738	EXTL1	Exostosin-like 1	EXTL1	2134	ENSG00000158008			Extl1 (MGI:1888742)
chr1	26038021	26046137	1p36.11	1p36.11	609617	SLC30A2, ZNT2, TNZD	Solute carrier family 30 (zinc transporter), member 2	SLC30A2	7780	ENSG00000158014		Zinc deficiency, transient neonatal, 608118 (3), Autosomal dominant	Slc30a2 (MGI:106637)
chr1	26051303	26067633	1p36.11	1p36.11	606131	TRIM63, RNF28, SMRZ, MURF1	Tripartite motif containing 63	TRIM63	84676	ENSG00000158022			Trim63 (MGI:2447992)
chr1	26109130	26125547	1p35.3	1p36.11	610785	PDIK1L	PDLIM1-interacting kinase 1-like	PDIK1L	149420	ENSG00000175087			Pdik1l (MGI:2385213)
chr1	26169896	26170872	1p36.11	1p36.11	616698	ZNF593, ZT86	Zinc finger protein 593	ZNF593	51042	ENSG00000142684			Zfp593 (MGI:1915290)
chr1	26177489	26189883	1p36.11	1p36.11	603272	CNKSR1, CNK1	Connector enhancer of KSR 1	CNKSR1	10256	ENSG00000142675			Cnksr1 (MGI:2670958)
chr1	26189961	26202541	1p35.3	1p36.11	609121	CATSPER4	Cation channel, sperm-associated, 4	CATSPER4	378807	ENSG00000188782			Catsper4 (MGI:3043288)
chr1	26279721	26281521	1p36.11	1p36.11	615679	SH3BGRL3	SH3 domain-binding glutamic acid-rich protein-like protein 3	SH3BGRL3	83442	ENSG00000142669			Sh3bgrl3 (MGI:1920973)
chr1	26282281	26318264	1p36.11	1p36.11	609151	UBXN11, SOC	UBX domain protein 11	UBXN11	91544	ENSG00000158062			Ubxn11 (MGI:1914836)
chr1	26317919	26320522	1p36.11	1p36.11	114280	CD52, CDW52	CD52 molecule	CD52	1043	ENSG00000169442			
chr1	26361631	26374535	1p36.11	1p36.11	616775	ZNF683, HOBIT	Zinc finger protein 683	ZNF683	257101	ENSG00000176083			
chr1	26410767	26429727	1p36.11	1p36.11	611043	LIN28, LIN28A	Lin28, C. elegans, homolog of	LIN28A	79727	ENSG00000131914			Lin28a (MGI:1890546)
chr1	26432281	26471305	1p36.11	1p36.11	608172	DHDDS, HDS, RP59, DEDSM	Dehydrodolichyl diphosphate synthase	DHDDS	79947	ENSG00000117682	mutation identified in 1 CDG1BB patient	?Congenital disorder of glycosylation, type 1bb, 613861 (3), Autosomal recessive; Developmental delay and seizures with or without movement abnormalities, 617836 (3), Autosomal dominant; Retinitis pigmentosa 59, 613861 (3), Autosomal recessive	Dhdds (MGI:1914672)
chr1	26472410	26476641	1p36.1	1p36.11	163910	HMGN2, HMG17	High-mobility group nucleosomal binding protein 2	HMGN2	3151	ENSG00000198830			
chr1	26529757	26575028	1p36.1	1p36.11	601684	RPS6KA1, RSK1	Ribosomal protein S6 kinase, 90kD, 1	RPS6KA1	6195	ENSG00000117676			Rps6ka1 (MGI:104558)
chr1	26696032	26782109	1p35.3	1p36.11	603024	ARID1A, C1orf4, B120, SMARCF1, MRD14, CSS2	AT rich interactive domain 1A, SWI-like	ARID1A	8289	ENSG00000117713		Coffin-Siris syndrome 2, 614607 (3), Autosomal dominant	Arid1a (MGI:1935147)
chr1	26787962	26798402	1p36.11	1p36.11	610274	PIGV, HPMRS1	Phosphatidylinositol glycan, class V	PIGV	55650	ENSG00000060642		Hyperphosphatasia with mental retardation syndrome 1, 239300 (3), Autosomal recessive	Pigv (MGI:2442480)
chr1	26863137	26864456	1p36.11	1p36.11	601290	SFN	Stratifin	SFN	2810	ENSG00000175793			Sfn (MGI:1891831)
chr1	26890487	26900470	1p36.11	1p36.11	617486	GPATCH3	G-patch domain-containing protein 3	GPATCH3	63906	ENSG00000198746			Gpatch3 (MGI:2442492)
chr1	26900568	26946870	1p36.11	1p36.11	610325	NUDC	Nuclear distribution gene C, A. nigulans, homolog of	NUDC	10726	ENSG00000090273			Nudc (MGI:106014)
chr1	26911483	26914109	1p36.1	1p36.11	604630	NR0B2, SHP	Nuclear receptor subfamily 0, group B, member 2	NR0B2	8431	ENSG00000131910		Obesity, mild, early-onset, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Nr0b2 (MGI:1346344)
chr1	26949555	26960495	1p36	1p36.11	616758	KDF1, C1orf172, ECTD12	Keratinocyte differentiation factor 1	KDF1	126695	ENSG00000175707	mutation identified in 1 ECTD12 family	?Ectodermal dysplasia 12, hypohidrotic/hair/tooth/nail type, 617337 (3), Autosomal dominant	Kdf1 (MGI:1916323)
chr1	26993662	27000890	1p36.11	1p36.11	616824	TRNP1	TMF1-regulated nuclear protein 1	TRNP1	388610	ENSG00000253368			Trnp1 (MGI:1916789)
chr1	27098808	27155129	1p36.1-p35	1p36.11	107310	SLC9A1, NHE1, APNH, LIKNS	Solute carrier family 9 (sodium/hydrogen exchanger), member 1 (antiporter, Na+/H+, amiloride sensitive)	SLC9A1	6548	ENSG00000090020	mutation identified in 1 LIKNS family	?Lichtenstein-Knorr syndrome, 616291 (3), Autosomal recessive	Slc9a1 (MGI:102462)
chr1	27341991	27353931	1p36.11	1p36.11	608042	SYTL1, SLP1, JFC1	Synaptotagmin-like protein 1	SYTL1	84958	ENSG00000142765			Sytl1 (MGI:1933365)
chr1	27355178	27368036	1p36.11	1p36.11	604468	MAP3K6, MAPKKK6, ASK2	Mitogen-activated protein kinase kinase kinase 6	MAP3K6	9064	ENSG00000142733			Map3k6 (MGI:1855691)
chr1	27369109	27374851	1p36.11	1p36.11	604973	FCN3, HAKA1	Ficolin 3	FCN3	8547	ENSG00000142748		Immunodeficiency due to ficolin 3 deficiency, 613860 (3), Autosomal recessive	
chr1	27392643	27395813	1p36.1-p34.3	1p36.11	600241	GPR3	G protein-coupled receptor-3	GPR3	2827	ENSG00000181773			Gpr3 (MGI:101908)
chr1	27404225	27490186	1p36.11-p34.3	1p36.11	605875	WASF2, WAVE2, SCAR2	WAS protein family member 2	WASF2	10163	ENSG00000158195	?pseudogene on Xp11.21		Wasf2 (MGI:1098641)
chr1	27534244	27604177	1p36.11	1p36.1-p35.3	615790	AHDC1, MRD25	AT-hook DNA-binding motif-containing protein 1	AHDC1	27245	ENSG00000126705		Xia-Gibbs syndrome, 615829 (3), Autosomal dominant	Ahdc1 (MGI:2444218)
chr1	27600000	34300000	1p35		132850	EBVS1	Epstein-Barr virus integration site	EBVS1	1888				
chr1	27612288	27635560	1p36.2-p36.1	1p35.3	164940	FGR, SRC2	Oncogene FGR	FGR	2268	ENSG00000000938	same as SRC2		Fgr (MGI:95527)
chr1	27666060	27672228	1p35	1p35.3	147572	G1P3, IFI616	Interferon, alpha-inducible protein (clone IFI-6-16)	IFI6	2537	ENSG00000126709			
chr1	27830740	27851671	1p35	1p35.3	602636	PPP1R8, NIPP1, ARD1	Protein phosphatase-1, regulatory subunit-8	PPP1R8	5511	ENSG00000117751			Ppp1r8 (MGI:2140494)
chr1	27872530	27886684	1p35.3	1p35.3	617856	THEMIS2, C1orf38, ICB1	Thymocyte selection-associated protein family, member 2	THEMIS2	9473	ENSG00000130775			Themis2 (MGI:2446213)
chr1	27891523	27914796	1p35	1p35.3	179836	RPA2	Replication protein A2, 32kD	RPA2	6118	ENSG00000117748			Rpa2 (MGI:1339939)
chr1	27934954	27959156	1p35.3	1p35.3	617737	SMPDL3B, ASML3B	Sphingolyelin phosphodiesterase, acid-like, 3B	SMPDL3B	27293	ENSG00000130768			Smpdl3b (MGI:1916022)
chr1	27970343	28088670	1p36	1p35.3	601655	EYA3	Eyes absent, Drosophila, homolog of, 3	EYA3	2140	ENSG00000158161			Eya3 (MGI:109339)
chr1	28147165	28193935	1p35-p34.3	1p35.3	173393	PTAFR	Platelet-activating factor receptor	PTAFR	5724	ENSG00000169403			Ptafr (MGI:106066)
chr1	28236090	28238104	1p35.3	1p35.3	614981	ATP1F1, IF1	ATPase inhibitory factor 1	ATP5IF1	93974	ENSG00000130770			Atpif1 (MGI:1196457)
chr1	28259451	28282490	1p35.3	1p35.3	607767	SEST2, HI95	Sestrin 2	SESN2	83667	ENSG00000130766			Sesn2 (MGI:2651874)
chr1	28329001	28335966	1p35.3	1p35.3	612384	MED18	Mediator complex subunit 18	MED18	54797	ENSG00000130772			Med18 (MGI:1914469)
chr1	28369553	28500368	1p35.3	1p35.3	608726	PHACTR4	Phosphatase and actin regulator 4	PHACTR4	65979	ENSG00000204138			Phactr4 (MGI:2140327)
chr1	28505942	28539195	1p36.1	1p35.3	179710	CHC1, RCC1	Regulator of chromosome condensation	RCC1	1104	ENSG00000180198			Rcc1 (MGI:1913989)
chr1	28505942	28510891	1p36.1	1p35.3	603238	RNU17D, U17HG	RNA, U17d small nucleolar	SNHG3	8420				
chr1	28507364	28507570	1p36.1	1p35.3	180645	RNU17A, RNE1	RNA, U17a small nucleolar	SNORA73A	6080		in IVS1 of CHC1		
chr1	28508557	28508761	1p36.1	1p35.3	603239	RNU17B	RNA, U17b small nucleolar	SNORA73B	26768				
chr1	28603095	28648706	1p35.3	1p35.3	600773	TAF12	TAF12 RNA polymerase II, TATA box-binding protein-associated factor, 20kD	TAF12	6883	ENSG00000120656			Taf12 (MGI:1913714)
chr1	28668727	28715602	1p35.3	1p35.3	604409	GMEB1	Glucocorticoid modulatory element-binding protein 1	GMEB1	10691	ENSG00000162419			Gmeb1 (MGI:2135604)
chr1	28736620	28769774	1p35	1p35.3	610640	YTHDF2	YTH N6-methyladenosine RNA-binding protein 2	YTHDF2	51441	ENSG00000198492	fused with AML1 in t(1;21)		Ythdf2 (MGI:2444233)
chr1	28812141	28863695	1p36.1-p34.3	1p35.3	165195	OPRD1	Opioid receptor, delta-1	OPRD1	4985	ENSG00000116329			Oprd1 (MGI:97438)
chr1	28887090	29120045	1p36.2-p34	1p35.3	130500	EPB41, EL1	Erythrocyte surface protein band 4.1	EPB41	2035	ENSG00000159023		Elliptocytosis-1, 611804 (3)	Epb41 (MGI:95401)
chr1	29147737	29182124	1p35.3	1p35.3	601940	SRSF4, SFRS4, SRp75	Splicing factor, serine/arginine-rich, 4	SRSF4	6429	ENSG00000116350			Srsf4 (MGI:1890577)
chr1	29192656	29230957	1p35.3	1p35.3	608205	MECR, NRBF1, DYTOABG	Mitochondrial trans-2-enoyl-CoA reductase	MECR	51102	ENSG00000116353		Dystonia, childhood-onset, with optic atrophy and basal ganglia abnormalities, 617282 (3), Autosomal recessive	Mecr (MGI:1349441)
chr1	29236515	29326812	1p35.3	1p35.3	602454	PTPRU, GLEPP1, PTPU2	Protein tyrosine phosphatase, receptor type, U	PTPRU	10076	ENSG00000060656			Ptpru (MGI:1321151)
chr1	30711276	30723584	1p35	1p35.2	115437	MATN1, CRTM, CMP	Matrilin 1, cartilage matrix protein	MATN1	4146	ENSG00000162510			Matn1 (MGI:106591)
chr1	30732467	30757839	1p34	1p35.2	601476	LAPTM5	Lysosomal-associated multispanning membrane protein-5	LAPTM5	7805	ENSG00000162511			Laptm5 (MGI:108046)
chr1	30869465	30909734	1pter-p22.3	1p35.2	186357	SDC3, SYND3, SDCN	Syndecan 3	SDC3	9672	ENSG00000162512		{Obesity, association with}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Sdc3 (MGI:1349163)
chr1	30931505	31065716	1p35.2	1p35.2	607204	PUM1, KIAA0099	Pumilio, Drosophila, homolog of, 1	PUM1	9698	ENSG00000134644			Pum1 (MGI:1931749)
chr1	31179269	31239886	1p35.2	1p35.2	612871	NKAIN1	Na+/K+ transporting ATPase-interacting 1	NKAIN1	79570	ENSG00000084628			Nkain1 (MGI:1914399)
chr1	31259567	31296796	1p35.2	1p35.2	607797	SNRNP40, SPF38, PRPF8BP	Small nuclear ribonucleoprotein 40kDa (U5)	SNRNP40	9410	ENSG00000060688			Snrnp40 (MGI:1913835)
chr1	31359594	31373617	1p33-p31	1p35.2	134651	FABP3	Fatty acid-binding protein 3, muscle	FABP3	2170	ENSG00000121769			Fabp3 (MGI:95476)
chr1	31409564	31434679	1p35.2	1p35.2	614549	SERINC2	Serine incorporator 2	SERINC2	347735	ENSG00000168528			Serinc2 (MGI:1919132)
chr1	31576383	31587685	1p35.2	1p35.2	616064	TINAGL1, TINAGRP	Tubulointerstitial nephritis antigen-like protein 1	TINAGL1	64129	ENSG00000142910			Tinagl1 (MGI:2137617)
chr1	31617699	31632517	1p35.2	1p35.2	602392	HCRTR1, OX1R	Hypocretin receptor 1	HCRTR1	3061	ENSG00000121764			Hcrtr1 (MGI:2385650)
chr1	31629861	31645236	1p34	1p35.2	610033	PEF1	Peflin	PEF1	553115	ENSG00000162517			Pef1 (MGI:1915148)
chr1	31652246	31704166	1p34	1p35.2	120326	COL16A1	Collagen XVI, alpha-1 polypeptide	COL16A1	1307	ENSG00000084636			Col16a1 (MGI:1095396)
chr1	31727104	31764062	1p35	1p35.2	602683	ADGRB2, BAI2	Adhesion G protein-coupled receptor B2	ADGRB2	576	ENSG00000121753			Adgrb2 (MGI:2451244)
chr1	31906420	31938386	1p35	1p35.2	601584	PTP4A2, PTP4A, PRL2, HH13	Protein tyrosine phosphatase, type 4A, 2	PTP4A2	8073	ENSG00000184007			Ptp4a2 (MGI:1277117)
chr1	32013693	32060858	1p32	1p35.2	602489	KHDRBS1, SAM68	KH domain-containing, RNA-binding, signal transduction-associated protein 1	KHDRBS1	10657	ENSG00000121774			Khdrbs1 (MGI:893579)
chr1	32108042	32176567	1p35.1	1p35.2	610563	KPNA6	Karyopherin alpha-6	KPNA6	23633	ENSG00000025800			Kpna6 (MGI:1100836)
chr1	32200385	32205389	1p35.1	1p35.2	610162	CCDC28B, MGC1203	Coiled-coil domain-containing protein 28B	CCDC28B	79140	ENSG00000160050		{Bardet-Biedl syndrome 1, modifier of}, 209900 (3), Autosomal recessive, Digenic recessive	Ccdc28b (MGI:1913514)
chr1	32221583	32231603	1p34.1	1p35.2	603911	EIF3I, EIF3S2, TRIP1	Eukaryotic translation initiation factor 3, subunit I	EIF3I	8668	ENSG00000084623	pseudogene on 7q32		Eif3i (MGI:1860763)
chr1	32251238	32286166	1p35-p34.3	1p35.2	153390	LCK, IMD22	Lymphocyte-specific protein tyrosine kinase	LCK	3932	ENSG00000182866	LCK/TCRB fusion in leukemia; mutation identified in 1 IMD22 patient	?Immunodeficiency 22, 615758 (3), Autosomal recessive	Lck (MGI:96756)
chr1	32292102	32333627	1p34.1	1p35.2-p35.1	601241	HDAC1, RPD3L1	Histone deacetylase-1	HDAC1	3065	ENSG00000116478			Hdac1 (MGI:108086)
chr1	32333828	32336238	1p34	1p35.1	602940	MARCKSL1, MLP, MRP	MARCKS-like protein 1	MARCKSL1	65108	ENSG00000175130			Marcksl1 (MGI:97143)
chr1	32352719	32365264	1p35-p34	1p35.1	607660	TSSK3, STK22C, STK22D	Testis-specific serine/threonine kinase 3	TSSK3	81629	ENSG00000162526			Tssk3 (MGI:1929914)
chr1	32364632	32394460	1p35.1	1p35.1	617518	BSDC1	BSD domain-containing protein 1	BSDC1	55108	ENSG00000160058			Bsdc1 (MGI:1913466)
chr1	32620817	32651007	1p35.1	1p35.1	615891	ZBTB8OS, ARCH	Zinc finger- and BTB domain-containing protein 8, opposite strand	ZBTB8OS	339487	ENSG00000176261			Zbtb8os (MGI:1914356)
chr1	32679905	32703595	1p34.3-p34.1	1p35.1	611750	SYNC1	Syncoilin 1	SYNC	81493				Sync (MGI:1916078)
chr1	32775237	32818031	1p35	1p35.1	603623	YARS, CMTDIC, TYRRS, YTS, YRS	Tyrosyl-tRNA synthetase	YARS	8565	ENSG00000134684		Charcot-Marie-Tooth disease, dominant intermediate C, 608323 (3), Autosomal dominant	Yars (MGI:2147627)
chr1	32816766	32858878	1p34.3	1p35.1	611889	S100PBP, S100PBPR	S100P-binding protein	S100PBP	64766	ENSG00000116497			S100pbp (MGI:1921898)
chr1	32862267	32872491	1p35.1	1p35.1	611906	FNDC5, FRCP2	Fibronectin type III domain-containing protein 5	FNDC5	252995	ENSG00000160097			Fndc5 (MGI:1917614)
chr1	32885964	32894645	1p35-p34.2	1p35.1	142622	HPCA, DYT2	Hippocalcin, 23kD, Ca2+-binding protein	HPCA	3208	ENSG00000121905		Dystonia 2, torsion, autosomal recessive, 224500 (3), Autosomal recessive	Hpca (MGI:1336200)
chr1	32932497	32965265	1p35.1	1p35.1	610872	IBRDC3, NKLAM	IBR domain-containing protein 3	RNF19B	127544	ENSG00000116514			Rnf19b (MGI:1922484)
chr1	33007939	33036910	1p34	1p35.1	103020	AK2	Adenylate kinase-2, mitochondrial	AK2	204	ENSG00000004455		Reticular dysgenesis, 267500 (3), Autosomal recessive	Ak2 (MGI:87978)
chr1	33081109	33162287	1p34.3-p33	1p35.1	608353	AZIN2, ODC1L, KIAA1945	Antizyme inhibitor 2	AZIN2	113451	ENSG00000142920			Azin2 (MGI:2442093)
chr1	33145398	33184773	1p35.1	1p35.1	616755	TRIM62, DEAR1	Tripartite motif-containing protein 62	TRIM62	55223	ENSG00000116525			Trim62 (MGI:1914775)
chr1	33472590	33504252	1p35.1	1p35.1	611315	ZSCAN20, ZNF31, KOX29	Zinc finger- and SCAN domain-containing protein 20	ZSCAN20	7579	ENSG00000121903			Zscan20 (MGI:2679268)
chr1	33513998	34165841	1p35.3	1p35.1	608398	CSMD2, KIAA1884	Cub and Sushi multiple domains 2	CSMD2	114784	ENSG00000121904			Csmd2 (MGI:2386401)
chr1	33860474	33864790	1p35.1	1p35.1	617285	HMGB4	High mobility group box 4	HMGB4	127540	ENSG00000176256			Hmgb4 (MGI:1916567)
chr1	34300000	39600000	1p34.3		609919	GBD3	Gallbladder disease 3	GBD3	100048906		new D2S255	Gallbladder disease 3, 609919 (2)	
chr1	34300000	60800000	1p34-p32		613545	MACST	Macrostomia		100529231		max lod at D1S2797	Macrostomia, 613545 (2)	
chr1	34754776	34758512	1p35.1	1p34.3	604493	GJB5, CX31.1	Gap junction protein, beta-5	GJB5	2709	ENSG00000189280			Gjb5 (MGI:95723)
chr1	34759740	34763723	1p35.1	1p34.3	605425	GJB4, CX30.3, EKVP2	Gap junction protein, beta-4	GJB4	127534	ENSG00000189433		Erythrokeratodermia variabilis et progressiva 2, 617524 (3), Autosomal dominant	Gjb4 (MGI:95722)
chr1	34781188	34786365	1p35.1	1p34.3	603324	GJB3, CX31, DFNA2B, EKVP1	Gap junction protein, beta-3	GJB3	2707	ENSG00000188910	same YAC as GJA4	Deafness, autosomal dominant 2B, 612644 (3), Autosomal dominant; Deafness, autosomal dominant, with peripheral neuropathy (3); Deafness, autosomal recessive (3); Deafness, digenic, GJB2/GJB3, 220290 (3), Autosomal recessive; Erythrokeratodermia variabilis et progressiva 1, 133200 (3), Autosomal recessive, Autosomal dominant	Gjb3 (MGI:95721)
chr1	34792957	34795746	1p35.1	1p34.3	121012	GJA4, CX37	Gap junction protein, alpha-4, 37kD (connexin 37)	GJA4	2701	ENSG00000187513			Gja4 (MGI:95715)
chr1	34986164	35031967	14q12	1p34.3	613567	ZMYM6, ZNF258	Zinc finger, MYM-type 6	ZMYM6	9204	ENSG00000163867			Zmym6 (MGI:106505)
chr1	35176377	35193173	1p34	1p34.3	605199	SFPQ, PSF	Splicing factor, proline- and glutamine-rich	SFPQ	6421	ENSG00000116560	fusion gene with TFE3 in RCC		Sfpq (MGI:1918764)
chr1	35268693	35421943	1p34.3	1p34.3	613568	ZMYM4, ZNF262, KIAA0425	Zinc finger, MYM-type 4	ZMYM4	9202	ENSG00000146463			Zmym4 (MGI:1915035)
chr1	35433489	35557602	1p34.3	1p34.3	613535	KIAA0319L, KIAA1837	KIAA0319-like	KIAA0319L	79932	ENSG00000142687			AU040320 (MGI:2140475)
chr1	35557791	35566778	1p34.3	1p34.3	608458	NCDN, KIAA0607	Neurochondrin	NCDN	23154	ENSG00000020129			Ncdn (MGI:1347351)
chr1	35568738	35595590	1p34.3	1p34.3	614428	TFAP2E	Transcription factor AP2-epsilon	TFAP2E	339488	ENSG00000116819			Tfap2e (MGI:2679630)
chr1	35599540	35641843	1p34.2	1p34.3	602175	PSMB2	Proteasome subunit, beta type, 2	PSMB2	5690	ENSG00000126067			Psmb2 (MGI:1347045)
chr1	35720217	35769984	1p34.3-p34.1	1p34.3	605434	CLASPIN	Claspin, Xenopus, homolog of	CLSPN	63967	ENSG00000092853			Clspn (MGI:2445153)
chr1	35807623	35857889	1p35-p34	1p34.3	607356	EIF2C4, AGO4, KIAA1567	Eukaryotic translation initiation factor 2C, 4 (argonaute 4)	AGO4	192670	ENSG00000134698			Ago4 (MGI:1924100)
chr1	35869807	35929609	1p35-p34	1p34.3	606228	AGO1, EIF2C1, GERP95, EIF2C	Argonaute 1, RISC catalytic component	AGO1	26523	ENSG00000092847			Ago1 (MGI:2446630)
chr1	35925682	36056469	1p35-p34	1p34.3	607355	EIF2C3, AGO3	Eukaryotic translation initiation factor 2C, subunit 3 (argonaute 3)	AGO3	192669	ENSG00000126070			Ago3 (MGI:2446634)
chr1	36088851	36093931	1p35.3-p34.1	1p34.3	610624	ADPRHL2, ARH3	ADP-ribosylhydrolase-like 2	ADPRHL2	54936	ENSG00000116863			Adprhl2 (MGI:2140364)
chr1	36095235	36126206	1p34.3-p32.3	1p34.3	120252	COL8A2, FECD1, PPCD2	Collagen VIII, alpha-2 polypeptide	COL8A2	1296	ENSG00000171812		Corneal dystrophy, Fuchs endothelial, 1, 136800 (3), Autosomal dominant; Corneal dystrophy, posterior polymorphous 2, 609140 (3), Autosomal dominant	Col8a2 (MGI:88464)
chr1	36136568	36156052	1p34.3	1p34.3	610955	TRAPPC3, BET3	Trafficking protein particle complex, subunit 3	TRAPPC3	27095	ENSG00000054116			Trappc3 (MGI:1351486)
chr1	36224411	36305356	1p34.3	1p34.3	603809	THRAP3, TRAP150	Thyroid hormone receptor-associated protein 3	THRAP3	9967	ENSG00000054118			Thrap3 (MGI:2442637)
chr1	36339618	36385926	1p34.3	1p34.3	609437	STK40, SHIK	Serine/threonine protein kinase 40	STK40	83931	ENSG00000196182			Stk40 (MGI:1921428)
chr1	36393419	36397958	1p34.3	1p34.3	617909	LSM10	Lsm10, U7 small nuclear RNA-associated protein	LSM10	84967	ENSG00000181817			Lsm10 (MGI:2151045)
chr1	36417905	36450484	1p34.2	1p34.3	608854	NOR1	Oxidored-nitro domain-containing protein 1	OSCP1	127700	ENSG00000116885			Oscp1 (MGI:1916308)
chr1	36455760	36464438	1p35-p34.1	1p34.3	611979	MRPS15	Mitochondrial ribosomal protein S15	MRPS15	64960	ENSG00000116898			Mrps15 (MGI:1913657)
chr1	36466042	36483313	1p35-p34.3	1p34.3	138971	CSF3R, GCSFR, SCN7	Colony-stimulating factor-3 receptor (granulocyte)	CSF3R	1441	ENSG00000119535		Neutropenia, severe congenital, 7, autosomal recessive, 617014 (3), Autosomal recessive	Csf3r (MGI:1339755)
chr1	36795526	37034242	1p34-p33	1p34.3	138243	GRIK3, GLUR7	Glutamate receptor, ionotropic, kainate 3	GRIK3	2899	ENSG00000163873			Grik3 (MGI:95816)
chr1	37474517	37484376	1p35.3-p33	1p34.3	610562	ZC3H12A, MCPIP, MCPIP1	Zinc finger CCCH domain-containing protein 12A	ZC3H12A	80149	ENSG00000163874			Zc3h12a (MGI:2385891)
chr1	37489959	37514818	1p35.3-p33	1p34.3	611001	MEAF6, C1orf149, EAF6	MYST/ESA1-associated factor 6	MEAF6	64769	ENSG00000163875			Meaf6 (MGI:1917338)
chr1	37534448	37554343	1p34.3	1p34.3	608241	SNIP1, PMRED	SMAD nuclear interacting protein 1	SNIP1	79753	ENSG00000163877		Psychomotor retardation, epilepsy, and craniofacial dysmorphism, 614501 (3), Autosomal recessive	Snip1 (MGI:2156003)
chr1	37556918	37566856	1p35.1	1p34.3	602135	DNALI1, P28	Dynein, axonemal, light intermediate polypeptide 1	DNALI1	7802	ENSG00000163879			Dnali1 (MGI:1922813)
chr1	37566811	37595984	1p34.3	1p34.3	609365	GNL2, NGP1	Guanine nucleotide-binding protein-like 2	GNL2	29889	ENSG00000134697			Gnl2 (MGI:2385207)
chr1	37611349	37634922	1p34.3	1p34.3	609595	RSPO1, FLJ40906	Roof plate-specific spondin, mouse, homolog of, 1	RSPO1	284654	ENSG00000169218		Palmoplantar hyperkeratosis and true hermaphroditism, 610644 (3), Autosomal recessive; Palmoplantar hyperkeratosis with squamous cell carcinoma of skin and sex reversal, 610644 (3), Autosomal recessive	Rspo1 (MGI:2183426)
chr1	37681569	37692335	1p34.3	1p34.3	614799	C1orf109	Chromosome 1 open reading frame 109	C1orf109	54955	ENSG00000116922			9930104L06Rik (MGI:3041172)
chr1	37692400	37709718	1p34.3	1p34.3	609977	CDCA8	Cell division cycle-associated protein 8	CDCA8	55143	ENSG00000134690	possible pseudogene on chr.7		Cdca8 (MGI:1196274)
chr1	37713887	37765151	1p34.3	1p34.3	611123	EPHA10	Ephrin receptor EphA10	EPHA10	284656	ENSG00000183317			Epha10 (MGI:3586824)
chr1	37802941	37808192	1p34.2	1p34.3	612276	YRDC, IRIP	YRDC domain-containing protein	YRDC	79693	ENSG00000196449			Yrdc (MGI:2387201)
chr1	37809566	37859619	1p33	1p34.3	600172	MTF1	Metal-regulatory transcription factor 1	MTF1	4520	ENSG00000188786			Mtf1 (MGI:101786)
chr1	37860696	37947094	1p34	1p34.3	147264	INPP5B	Inositol polyphosphate-5-phosphatase, 75kD	INPP5B	3633	ENSG00000204084			Inpp5b (MGI:103257)
chr1	37956974	37990109	1p34.3	1p34.3	605596	SF3A3, SF3A60, SAP61, PRP9	Splicing factor 3A, subunit 3	SF3A3	10946	ENSG00000183431			Sf3a3 (MGI:1922312)
chr1	37996764	38005690	1p34	1p34.3	602790	FHL3, SLIM2	Four-and-a-half LIM domains-3	FHL3	2275	ENSG00000183386			Fhl3 (MGI:1341092)
chr1	38012711	38024824	1p34.3	1p34.3	609440	UTP11L, CGI94	UTP11-like protein	UTP11	51118	ENSG00000183520			Utp11 (MGI:1914455)
chr1	38043850	38046777	1p34.1	1p34.3	602479	POU3F1	POU domain, class 3, transcription factor-1	POU3F1	5453	ENSG00000185668			
chr1	38838196	38859822	1p34	1p34.3	608267	RRAGC, RAGC	RAS-related GTP-binding protein C	RRAGC	64121	ENSG00000116954			Rragc (MGI:1858751)
chr1	38862489	38873377	1p33-p32.2	1p34.3	606535	MYCBP	MYC-binding protein	MYCBP	26292	ENSG00000214114			Mycbp (MGI:1891750)
chr1	38874066	38881625	1p34.3	1p34.3	611923	GJA9, CX59	Gap junction protein, alpha-9	GJA9	81025	ENSG00000131233			
chr1	38991243	39006064	1p34.3	1p34.3	615164	AKIRIN1	Akirin 1	AKIRIN1	79647	ENSG00000174574			Akirin1 (MGI:1915300)
chr1	39026294	39034635	1p34.2-p33	1p34.3	603847	NDUFS5	NADH dehydrogenase (ubiquinone) Fe-S protein 5, 15kD	NDUFS5	4725	ENSG00000168653			
chr1	39084166	39487137	1p32-p31	1p34.3	608271	MACF1, ACF7, KIAA1251	Microtubule-actin cross-linking factor 1	MACF1	23499	ENSG00000127603			
chr1	39560812	39576848	1p36-p32	1p34.3	603407	PABPC4, PABP4, IPABP, APP1	Polyadenylate-binding protein, cytoplasmic, 4	PABPC4	8761	ENSG00000090621			Pabpc4 (MGI:2385206)
chr1	39623430	39639675	1p34.3	1p34.2	609034	HEYL	Hariy/enhancer of split-related with YRPW motif-like protein	HEYL	26508				Heyl (MGI:1860511)
chr1	39659120	39672037	1p34.3-p33	1p34.2	610525	NT5C1A, CN1A, CNI, CN1	5'-nucleotidase, cytosolic, IA	NT5C1A	84618	ENSG00000116981			Nt5c1a (MGI:2155700)
chr1	39738844	39765697	1p34.2	1p34.2	602435	PPIE, CYP33	Peptidyl-prolyl isomerase E	PPIE	10450	ENSG00000084072			Ppie (MGI:1917118)
chr1	39757181	39788860	1p34.2	1p34.2	602284	BMP8B, OP2	Bone morphogenetic protein-8b (osteogenic protein 2)	BMP8B	656	ENSG00000116985			
chr1	39769524	39771347	1p34.2	1p34.2	610289	OXCT2, FLJ0030	3-oxoacid CoA transferase 2	OXCT2	64064	ENSG00000198754			
chr1	39841030	39883510	1p34.2	1p34.2	617840	TRIT1, IPT, COXPD35	tRNA isopentenyltransferase 1	TRIT1	54802	ENSG00000043514		Combined oxidative phosphorylation deficiency 35, 617873 (3), Autosomal recessive	Trit1 (MGI:1914216)
chr1	39895423	39902014	1p34.3	1p34.2	164850	MYCL, LMYC	Oncogene MYC, lung carcinoma-derived	MYCL	4610	ENSG00000116990			Mycl (MGI:96799)
chr1	39955111	39969967	1p34.2	1p34.2	614397	MFSD2A, MCPH15	Major facilitator superfamily domain-containing protein 2A	MFSD2A	84879	ENSG00000168389		Microcephaly 15, primary, autosomal recessive, 616486 (3), Autosomal recessive	Mfsd2a (MGI:1923824)
chr1	40040064	40072648	1p34.2	1p34.2	617801	CAP1	Cyclase-associated actin cytoskeleton regulatory protein 1	CAP1	10487	ENSG00000131236			Cap1 (MGI:88262)
chr1	40072705	40097469	1p32	1p34.2	600722	PPT1, CLN1	Palmitoyl-protein thioesterase 1	PPT1	5538	ENSG00000131238		Ceroid lipofuscinosis, neuronal, 1, 256730 (3), Autosomal recessive	Ppt1 (MGI:1298204)
chr1	40161368	40240920	1p32	1p34.2	180610	RLF	Rearranged L-myc fusion sequence	RLF	6018	ENSG00000117000	<800kb from MYCL1		Rlf (MGI:1924705)
chr1	40258049	40294183	1p34	1p34.2	606480	ZMPSTE24, FACE1, STE24, MADB	Zinc metalloproteinase STE24	ZMPSTE24	10269	ENSG00000084073		Mandibuloacral dysplasia with type B lipodystrophy, 608612 (3), Autosomal recessive; Restrictive dermopathy, lethal, 275210 (3), Autosomal recessive	Zmpste24 (MGI:1890508)
chr1	40300486	40317652	1p34.2	1p34.2	120260	COL9A2, EDM2, STL5	Collagen IX, alpha-2 polypeptide	COL9A2	1298	ENSG00000049089	mutation identified in1 STL5 family	Epiphyseal dysplasia, multiple, 2, 600204 (3), Autosomal dominant; ?Stickler syndrome, type V, 614284 (3), Autosomal recessive	Col9a2 (MGI:88466)
chr1	40373671	40423325	1p34.2	1p34.2	616916	SMAP2, SMAP1L	Small ADP-ribosylation factor GTPase-activating protein 2	SMAP2	64744	ENSG00000084070			Smap2 (MGI:1917030)
chr1	40620679	40692103	1p34.1	1p34.2	611600	RIMS3, NIM3, KIAA0137	Protein regulating synaptic membrane exocytosis 3	RIMS3	9783	ENSG00000117016			Rims3 (MGI:2443331)
chr1	40691569	40771602	1p32	1p34.2	605344	NFYC, CBFC	Nuclear transcription factor Y, gamma	NFYC	4802	ENSG00000066136			Nfyc (MGI:107901)
chr1	40757283	40757371	1p34.2	1p34.2	615151	MIR30C1	Micro RNA 30C-1	MIR30C1	407031				
chr1	40784011	40840456	1p34	1p34.2	603537	KCNQ4, DFNA2A	Potassium voltage-gated channel, KQT-like subfamily, member 4	KCNQ4	9132	ENSG00000117013		Deafness, autosomal dominant 2A, 600101 (3), Autosomal dominant	Kcnq4 (MGI:1926803)
chr1	40861055	40862345	1p35-p34	1p34.2	606815	CITED4	CBP/P300-interacting transactivator, with glu/asp-rich carboxy terminal domain, 4	CITED4	163732	ENSG00000179862			Cited4 (MGI:1861694)
chr1	40979298	41012564	1p34.1	1p34.2	123860	CTPS1, CTPS, IMD24	Cytidine 5'-triphosphate synthetase 1	CTPS1	1503	ENSG00000171793		Immunodeficiency 24, 615897 (3), Autosomal recessive	Ctps (MGI:1858304)
chr1	41027198	41242153	1p34	1p34.2	616396	SCMH1	Sex comb on midleg, Drosophila, homolog of, 1	SCMH1	22955	ENSG00000010803			Scmh1 (MGI:1352762)
chr1	41361930	41383590	1p34.1	1p34.2	611457	FOXO6	Forkhead box O6	FOXO6	100132074	ENSG00000204060			Foxo6 (MGI:2676586)
chr1	41478774	41484698	1p34	1p34.2	131241	EDN2	Endothelin-2	EDN2	1907	ENSG00000127129	vasoactive intestinal contractor (VIC) = mouse and rat equivalent		Edn2 (MGI:95284)
chr1	41506364	42035924	1p34	1p34.2	606649	HIVEP3, KRC	Human immunodeficiency virus type 1 enhancer-binding protein 3	HIVEP3	59269	ENSG00000127124			Hivep3 (MGI:106589)
chr1	42153420	42155823	1p34-p33	1p34.2	601271	GUCA2B, UGN	Guanylate cyclase activator 2B (uroguanylin)	GUCA2B	2981	ENSG00000044012			Guca2b (MGI:1270851)
chr1	42162690	42164723	1p35-p34	1p34.2	139392	GUCA2A, GUCA2	Guanylate cyclase activator 2A (guanylin 2, intestinal, heat-stable)	GUCA2A	2980	ENSG00000197273			Guca2a (MGI:102738)
chr1	42176538	42336804	1p34.2	1p34.2	616035	FOXJ3, KIAA1041	Forkhead box J3	FOXJ3	22887	ENSG00000198815			Foxj3 (MGI:2443432)
chr1	42456340	42473380	1p13.1-p12	1p34.2	609853	PPCS	Phosphopantothenoylcysteine synthetase	PPCS	79717	ENSG00000127125			Ppcs (MGI:1915237)
chr1	42657769	42681653	1p34.1	1p34.2	606095	PPIH	Peptidyl-prolyl isomerase H	PPIH	10465	ENSG00000171960			Ppih (MGI:106499)
chr1	42682234	42703802	1p34	1p34.2	154030	YBX1, NSEP1, YB1, DBPB	Y box binding protein 1 (major histocompatibility complex, class II, Y box-binding protein I)	YBX1	4904	ENSG00000065978			Ybx1 (MGI:99146)
chr1	42733092	42740253	1p34.2	1p34.2	610036	CLDN19, HOMG5	Claudin 19	CLDN19	149461	ENSG00000164007		Hypomagnesemia 5, renal, with ocular involvement, 248190 (3), Autosomal recessive	Cldn19 (MGI:3033992)
chr1	42746334	42767083	1p34	1p34.2	610339	P3H1, LEPRE1, GROS1, OI8	Prolyl 3-hydroxylase 1	P3H1	64175	ENSG00000117385		Osteogenesis imperfecta, type VIII, 610915 (3), Autosomal recessive	P3h1 (MGI:1888921)
chr1	42807051	42817387	1p34.2	1p34.2	617853	SVBP, CCDC23	Small vasohibin-binding protein	SVBP	374969	ENSG00000177868			Svbp (MGI:1916466)
chr1	42817104	42844988	1p34	1p34.2	609017	ERMAP, SC, RD	Erythroblast membrane-associated protein	ERMAP	114625	ENSG00000164010		[Blood group, Radin], 111620 (3); [Blood group, Scianna system], 111750 (3)	Ermap (MGI:1349816)
chr1	42925374	42959175	1p34.2	1p34.2	138140	SLC2A1, GLUT1, HTLVR, DYT18, PED, GLUT1DS, EIG12, DYT9, SDCHCN	Solute carrier family 2 (facilitated glucose transporter), member 1	SLC2A1	6513	ENSG00000117394	probably in 1p33	Dystonia 9, 601042 (3), Autosomal dominant; {Epilepsy, idiopathic generalized, susceptibility to, 12}, 614847 (3), Autosomal dominant; GLUT1 deficiency syndrome 1, infantile onset, severe, 606777 (3), Autosomal recessive, Autosomal dominant; GLUT1 deficiency syndrome 2, childhood onset, 612126 (3), Autosomal dominant; Stomatin-deficient cryohydrocytosis with neurologic defects, 608885 (3), Autosomal dominant	Slc2a1 (MGI:95755)
chr1	43164173	43172569	1p35-p33	1p34.2	614443	EBNA1BP2, EBP2	EBNA1-binding protein 2	EBNA1BP2	10969	ENSG00000117395			Ebna1bp2 (MGI:1916322)
chr1	43172329	43254357	1p34.2	1p34.2	614259	WDR65	WD repeat-containing protein 65	CFAP57	149465	ENSG00000243710			Cfap57 (MGI:2686209)
chr1	43300894	43323109	1p34-p33	1p34.2	600222	TIE, JTK14, TIE1	Tyrosine kinase with immunoglobulin and epidermal growth factor homology domains	TIE1	7075	ENSG00000066056			Tie1 (MGI:99906)
chr1	43336874	43354463	1p34	1p34.2	159530	MPL, TPOR, MPLV, THCYT2	Myeloproliferative leukemia virus, homolog of	MPL	4352	ENSG00000117400		Myelofibrosis with myeloid metaplasia, somatic, 254450 (3); Thrombocythemia 2, 601977 (3), Autosomal dominant, Somatic mutation; Thrombocytopenia, congenital amegakaryocytic, 604498 (3), Autosomal recessive	Mpl (MGI:97076)
chr1	43358954	43363202	1p34.2-p33	1p34.2	603618	CDC20	Cell division cycle 20, S. cerevisiae, homolog of	CDC20	991	ENSG00000117399	pseudogene on 9q13-q21		Cdc20 (MGI:1859866)
chr1	43363396	43368073	1p34.2	1p34.2	611813	ELOVL1, SSC1	Elongation of very long chain fatty acids-like 1	ELOVL1	64834	ENSG00000066322			Elovl1 (MGI:1858959)
chr1	43383907	43389811	1p34.2	1p34.2	607956	MED8	Mediator complex subunit 8	MED8	112950	ENSG00000159479			Med8 (MGI:1915269)
chr1	43389883	43454246	1p34.2	1p34.2	615463	SZT2, KIAA0467, EIEE18	Seizure threshold 2, mouse, homolog of	SZT2	23334	ENSG00000198198		Epileptic encephalopathy, early infantile, 18, 615476 (3), Autosomal recessive	Szt2 (MGI:3033336)
chr1	43522237	43623671	1p32	1p34.2	179590	PTPRF, LAR, BNAH2	Protein tyrosine phosphatase, receptor type, f polypeptide	PTPRF	5792	ENSG00000142949	mutation identified in 1 BNAH2 family	?Breasts and/or nipples, aplasia or hypoplasia of, 2, 616001 (3), Autosomal recessive	Ptprf (MGI:102695)
chr1	43650125	43705517	1p34.1	1p34.2-p34.1	609764	KDM4A, JMJD2A, JHDM3A, KIAA0677	Lysine-specific demethylase 4A	KDM4A	9682	ENSG00000066135			Kdm4a (MGI:2446210)
chr1	43700000	60800000	1p34.1-p32		178300	PTOS1	Ptosis, congenital 1, autosomal dominant	PTOS1	5765			Ptosis, hereditary congenital, 1, 178300 (2), Autosomal dominant	
chr1	43707464	43931164	1p34.1	1p34.1	606494	ST3GAL3, SIAT6, ST3GALII, MRT12, EIEE15	ST3 beta-galactoside alpha-2,3-sialyltransferase 3	ST3GAL3	6487	ENSG00000126091	mutation identified in 1 EIEE15 family	?Epileptic encephalopathy, early infantile, 15, 615006 (3), Autosomal recessive; Mental retardation, autosomal recessive 12, 611090 (3), Autosomal recessive	St3gal3 (MGI:1316659)
chr1	43946805	43968021	1p34.1	1p34.1	610411	IPO13, IMP13, KIAA0724, RANBP13	Importin 13	IPO13	9670	ENSG00000117408			Ipo13 (MGI:2385205)
chr1	43969980	43973370	1p34	1p34.1	603456	DPH2, DPH2L2	DPH2, S. cerevisiae, homolog of	DPH2	1802	ENSG00000132768			Dph2 (MGI:1914978)
chr1	43974647	43978299	1p32.3	1p34.1	603717	ATP6V0B, ATP6F	ATPase, H+ transporting, lysosomal 21kD, V0 subunit c''	ATP6V0B	533	ENSG00000117410			Atp6v0b (MGI:1890510)
chr1	43979201	43991170	1p33-p32	1p34.1	604013	B4GALT2	Beta-1,4-galactosyltransferase 2	B4GALT2	8704	ENSG00000117411			B4galt2 (MGI:1858493)
chr1	43996482	44031491	1p33	1p34.1	601019	SLC6A9, GLYT1, GCENSG	Solute carrier family 6 (neurotransmitter transporter, glycine), member 9	SLC6A9	6536	ENSG00000196517		Glycine encephalopathy with normal serum glycine, 617301 (3), Autosomal recessive	Slc6a9 (MGI:95760)
chr1	44043926	44135139	1p34.1	1p34.1	609602	ZNF393	Zinc finger protein-393	KLF17	128209	ENSG00000171872			Klf17 (MGI:2181068)
chr1	44213443	44220678	1p34.1	1p34.1	605077	DNMAP1, DMAP1	DNMT1-associated protein 1	DMAP1	55929	ENSG00000178028			Dmap1 (MGI:1913483)
chr1	44221069	44355297	1p32	1p34.1	609917	PRNPIP, PINT1	Prion protein-interacting protein	ERI3	79033	ENSG00000117419			Eri3 (MGI:2153887)
chr1	44405159	44651723	1p34.1	1p34.1	616136	RNF220	RING finger protein 220	RNF220	55182	ENSG00000187147			Rnf220 (MGI:1913993)
chr1	44739703	44767766	1p34.1	1p34.1	604538	KIF2C, KNSL6, MCAK	Kinesin family, member 2C	KIF2C	11004	ENSG00000142945			Kif2c (MGI:1921054)
chr1	44775573	44778739	1p34.1-p32	1p34.1	600357	RPS8	Ribosomal protein S8	RPS8	6202	ENSG00000142937			Rps8 (MGI:98166)
chr1	44782144	44792827	1p33-p32.3	1p34.1	607336	BEST4, VMD2L2	Bestrophin 4	BEST4	266675	ENSG00000142959			
chr1	44799951	44805994	1p34.1	1p34.1	602913	PLK3, CNK, PRK	Polo-like kinase 3	PLK3	1263	ENSG00000173846	previously assigned to 8p21 by FISH		Plk3 (MGI:109604)
chr1	44805907	44809751	1p34.1	1p34.1	611713	TCTEX1D4	TCTEX1 domain-containing 4	TCTEX1D4	343521	ENSG00000188396			Tctex1d4 (MGI:3045358)
chr1	44819843	44842943	1p32	1p34.1	603673	PTCH2	Patched, Drosophila, homolog of, 2	PTCH2	8643	ENSG00000117425		Basal cell carcinoma, somatic, 605462 (3); Basal cell nevus syndrome, 109400 (3), Autosomal dominant; Medulloblastoma, somatic, 155255 (3)	Ptch2 (MGI:1095405)
chr1	44850521	44986721	1p34.1	1p34.1	606273	EIF2B3	Eukaryotic translation initiation factor 2B, subunit 3	EIF2B3	8891	ENSG00000070785		Leukoencephalopathy with vanishing white matter, 603896 (3), Autosomal recessive	Eif2b3 (MGI:1313286)
chr1	45012132	45015668	1p34	1p34.1	613521	UROD	Uroporphyrinogen decarboxylase	UROD	7389	ENSG00000126088		Porphyria cutanea tarda, 176100 (3), Autosomal recessive, Autosomal dominant; Porphyria, hepatoerythropoietic, 176100 (3), Autosomal recessive, Autosomal dominant	Urod (MGI:98916)
chr1	45329241	45340469	1p34.3-p32.1	1p34.1	604933	MUTYH, MYH	MutY, E. coli, homolog of	MUTYH	4595	ENSG00000132781		Adenomas, multiple colorectal, 608456 (3), Autosomal recessive; Colorectal adenomatous polyposis, autosomal recessive, with pilomatricomas, 132600 (3), Somatic mutation; Gastric cancer, somatic, 613659 (3)	Mutyh (MGI:1917853)
chr1	45339669	45343977	1p34.1	1p34.1	613931	TOE1, PCH7	Target of EGR1	TOE1	114034	ENSG00000132773		Pontocerebellar hypoplasia, type 7, 614969 (3), Autosomal recessive	Toe1 (MGI:1915526)
chr1	45343882	45491341	1p32	1p34.1	604746	TESK2	Testis-specific protein kinase 2	TESK2	10420	ENSG00000070759			Tesk2 (MGI:2385204)
chr1	45500183	45511265	1p34.1	1p34.1	609831	MMACHC	MMACHC gene	MMACHC	25974	ENSG00000132763		Methylmalonic aciduria and homocystinuria, cblC type, 277400 (3), Autosomal recessive	Mmachc (MGI:1914346)
chr1	45511034	45522889	1p34.1	1p34.1	176763	PRDX1, PRXI, PAGA, NKEFA	Peroxiredoxin 1	PRDX1	5052	ENSG00000117450	pseudogene PAGB on 9p22	Methylmalonic aciduria and homocystinuria, cblC type, digenic, 277400 (3), Autosomal recessive	Prdx1 (MGI:99523)
chr1	45550778	45570050	1p33-p32	1p34.1	103830	AKR1A1, ALR	Aldo-keto reductase family 1, member A1 (aldehyde reductase)	AKR1A1	10327	ENSG00000117448			Akr1a1 (MGI:1929955)
chr1	45583987	45618905	1p34.1	1p34.1	603185	NASP	Nuclear autoantigenic sperm protein	NASP	4678	ENSG00000132780			Nasp (MGI:1355328)
chr1	45694323	45750812	1p32-p22	1p34.1	147485	IPP	Intracisternal A particle-promoted polypeptide	IPP	3652	ENSG00000197429			Ipp (MGI:96581)
chr1	45786991	46036123	1p34.1	1p34.1	612257	MAST2, MAST205, KIAA0807	Microtubule-associated serine/threonine kinase 2	MAST2	23139	ENSG00000086015			Mast2 (MGI:894676)
chr1	46040139	46174900	1p34.2	1p34.1	606076	PIK3R3	Phosphatidylinositol 3-kinase, regulatory, 3	PIK3R3	8503	ENSG00000117461			Pik3r3 (MGI:109277)
chr1	46175076	46196488	1p34.1	1p34.1	613170	TSPAN1, NET1	Tetraspanin 1	TSPAN1	10103	ENSG00000117472			Tspan1 (MGI:1914055)
chr1	46188680	46220304	1p34-p33	1p34.1	606822	POMGNT1, MEB, MDDGA3, MDDGB3, MDDGC3, RP76	Protein 0-mannose beta-1,2-N-acetylglucosaminyltransferase	POMGNT1	55624	ENSG00000085998		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 3, 253280 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 3, 613151 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 3, 613157 (3), Autosomal recessive; Retinitis pigmentosa 76, 617123 (3), Autosomal recessive	Pomgnt1 (MGI:1915523)
chr1	46203333	46221255	1p34.1	1p34.1	616129	LURAP1, LRAP35A	Leucine-rich adaptor protein 1	LURAP1	541468	ENSG00000171357			Lurap1 (MGI:1915325)
chr1	46247694	46278476	1p32	1p34.1	603615	RAD54L, HR54, HRAD54	RAD54, S. cerevisiae, homolog-like	RAD54L	8438	ENSG00000085999		Adenocarcinoma, colonic, somatic (3); {Breast cancer, invasive ductal}, 114480 (3), Autosomal dominant; Lymphoma, non-Hodgkin, somatic, 605027 (3)	Rad54l (MGI:894697)
chr1	46300000	60800000	1p33-p32		612728	BMND14	Bone mineral density quantitative trait locus 14		100294718		associated with rs17131547	[Bone mineral density QTL 14], 612728 (2)	
chr1	46300000	84400000	1p33-p31.1		613606	FWS	Forsythe-Wakeling syndrome		100529224		between rs2354462 and rs718883	Forsythe-Wakeling syndrome, 613606 (2), Autosomal recessive	
chr1	46300000	50200000	1p33		613857	OFC13	Orofacial cleft 13		100653367		associated with rs3827730	Orofacial cleft 13, 613857 (2), Autosomal dominant	
chr1	46300000	50200000	1p33		616392	SKINTL, SKINTP	SKINT1-like pseudogene	SKINT1L	391037				
chr1	46303612	46316776	1p34.1	1p33	613844	UQCRH	Ubiquinol-cytochrome c reductase hinge protein	UQCRH	7388	ENSG00000173660	pseudogene on 1p36		Uqcrh-ps1 (MGI:3641869)
chr1	46340176	46365151	1p33	1p33	615394	NSUN4	NOP2/SUN RNA methyltransferase family, member 4	NSUN4	387338	ENSG00000117481			Nsun4 (MGI:1919431)
chr1	46394266	46413847	1p33	1p33	602935	FAAH	Fatty acid amide hydrolase	FAAH	2166	ENSG00000117480		{Drug addiction, susceptibility to}, 606581 (3)	Faah (MGI:109609)
chr1	46489836	46514225	1p33	1p33	607410	DMBX1, OTX3	Diencephalon/mesencephalon homeobox 1	DMBX1	127343	ENSG00000197587			Dmbx1 (MGI:2153518)
chr1	46545637	46551656	1p33	1p33	611455	KNCN, KINO, L5	Kinocilin	KNCN	148930	ENSG00000162456			Kncn (MGI:3614952)
chr1	46557406	46604310	1p33	1p33	606724	MKNK1, MNK1	Mitogen-activated protein kinase-interacting serine/threonine kinase 1	MKNK1	8569	ENSG00000079277			Mknk1 (MGI:894316)
chr1	46798997	46819348	1p34-p12	1p33	124075	CYP4B1	Cytochrome P450, subfamily IVB, polypeptide 1	CYP4B1	1580	ENSG00000142973			Cyp4b1 (MGI:103225)
chr1	46929173	46941483	1p33	1p33	601310	CYP4A11	Cytochrome P450, subfamily IVA, polypeptide 11	CYP4A11	1579	ENSG00000187048			Cyp4a10,Cyp4a32,Cyp4a31 (MGI:88611,MGI:3717148,MGI:3028580)
chr1	46961363	47055431	1p33	1p33	614999	CYP4X1, CYPIVX1	Cytochrome P450, family 4, subfamily X, polypeptide 1	CYP4X1	260293	ENSG00000186377			Cyp4x1 (MGI:1932403)
chr1	47137424	47149737	1p33	1p33	615341	CYP4A22	Cytochrome P450, family 4, subfamily A, polypeptide 22	CYP4A22	284541	ENSG00000162365			Cyp4a12a,Cyp4a12b (MGI:3611747,MGI:88612)
chr1	47183588	47190098	1p33	1p33	607178	PDZK1IP1, MAP17	PDZK1-interacting protein 1	PDZK1IP1	10158	ENSG00000162366	near SLC in human, mouse, chicken, zebrafish		Pdzk1ip1 (MGI:1914432)
chr1	47216289	47232388	1p32	1p33	187040	TAL1, TCL5, SCL	T-cell acute lymphocytic leukemia-1	TAL1	6886	ENSG00000162367	proximal to MYCL1	Leukemia, T-cell acute lymphocytic, somatic, 613065 (3)	Tal1 (MGI:98480)
chr1	47250138	47314786	1p33	1p33	181590	STIL, SIL, MCPH7	SCL/TAL1-interrupting locus	STIL	6491	ENSG00000123473	within about 250kb of SCL	Microcephaly 7, primary, autosomal recessive, 612703 (3), Autosomal recessive	Stil (MGI:107477)
chr1	47333796	47378838	1p32	1p33	191710	CMPK1, CMPK, UMPK, UMK, CMK	Cytidine monophosphate (UMP-CMP) kinase 1, cytosolic	CMPK1	51727	ENSG00000162368			Cmpk1 (MGI:1913838)
chr1	47416071	47418051	1p32	1p33	601094	FOXE3, FKHL12, ASMD, CTRCT34, ASGD2, AAT11	Forkhead box E3	FOXE3	2301	ENSG00000186790		Anterior segment dysgenesis 2, multiple subtypes, 610256 (3), Autosomal recessive; {Aortic aneurysm, familial thoracic 11, susceptibility to}, 617349 (3), Autosomal dominant; Cataract 34, multiple types, 612968 (3)	
chr1	47436016	47440690	1p34-p32	1p33	602211	FOXD2, FKHL17, FREAC9	Forkhead box D2	FOXD2	2306	ENSG00000186564			Foxd2 (MGI:1347471)
chr1	47760527	47997367	1p33	1p33	614913	TRABD2B, TIKI2	TRAB domain-containing protein 2B	TRABD2B	388630	ENSG00000269113			Trabd2b (MGI:3650152)
chr1	48258642	48472207	1p33	1p33	613947	SPATA6, SRF1, HASH	Spermatogenesis-associated protein 6	SPATA6	54558	ENSG00000132122			Spata6 (MGI:1915196)
chr1	48520156	50023953	1p33	1p33	616476	AGBL4, CCP6	ATP/GTP-binding protein-like 4	AGBL4	84871	ENSG00000186094			Agbl4 (MGI:1918244)
chr1	50048013	50203785	1p34	1p33-p32	168360	ELAVL4, HUD, PNEM	Embryonic lethal, abnormal vision, Drosophila, homolog of, like-4 (Hu antigen D)	ELAVL4	1996	ENSG00000162374		Neuropathy, paraneoplastic sensory (1)	Elavl4 (MGI:107427)
chr1	50200000	60800000	1p32		606852	PARK10, AAOPD	Parkinson disease 10	PARK10	170534		max lod at D1S2652; ?associated with CDCP2	{Parkinson disease 10}, 606852 (2)	
chr1	50200000	60800000	1p32		613548	STQTL23	Stature quantitative trait locus 23		100529222		linked to rs628667	{Stature QTL 23}, 613548 (2)	
chr1	50417549	50423446	1p33-p32.3	1p32.3	614804	DMRTA2	Doublesex- and MAB3-related transcription factor A2	DMRTA2	63950	ENSG00000142700			Dmrta2 (MGI:2653629)
chr1	50441262	50960263	1p33	1p32.3	604460	FAF1, HFAF1	Fas-associated factor 1	FAF1	11124	ENSG00000185104			Faf1 (MGI:109419)
chr1	50968694	50974636	1p32	1p32.3	603369	CDKN2C, INK4C	Cyclin-dependent kinase inhibitor 2C	CDKN2C	1031	ENSG00000123080			Cdkn2c (MGI:105388)
chr1	51236272	51273446	1p32-p31	1p32.3	612598	RNF11	Ring finger protein 11	RNF11	26994	ENSG00000123091			Rnf11 (MGI:1352759)
chr1	51354262	51519322	1p32	1p32.3	600051	EPS15	Epidermal growth factor receptor pathway substrate-15	EPS15	2060	ENSG00000085832			Eps15 (MGI:104583)
chr1	51616873	51789218	1p34.2-p32.2	1p32.3	606737	OSBPL9, ORP9	Oxysterol-binding protein-like protein 9	OSBPL9	114883	ENSG00000117859			Osbpl9 (MGI:1923784)
chr1	51789191	51878936	1p32.2	1p32.3	602651	NRD1	Nardilysin (N-arginine dibasic convertase)	NRDC	4898	ENSG00000078618			Nrd1 (MGI:1201386)
chr1	51907955	51990763	1p32-p31	1p32.3	179510	RAB3B	Brain antigen RAB3B	RAB3B	5865	ENSG00000169213			Rab3b (MGI:1917158)
chr1	52020130	52056170	1p32.3	1p32.3	609448	TXNDC12, TLP19, ERP18	Thioredoxin domain-containing protein 12	TXNDC12	51060	ENSG00000117862			Txndc12 (MGI:1913323)
chr1	52142000	52348663	1p32.3	1p32.3	603755	ZFYVE9, MADHIP, SARA	Zinc finger, FYVE domain containing 9	ZFYVE9	9372	ENSG00000157077			Zfyve9 (MGI:2652838)
chr1	52372828	52404470	1p32	1p32.3	601902	ORC1, ORC1L	Origin recognition complex, subunit 1, S. cerevisiae, homolog	ORC1	4998	ENSG00000085840		Meier-Gorlin syndrome 1, 224690 (3), Autosomal recessive	Orc1 (MGI:1328337)
chr1	52404546	52418319	1p32.3	1p32.3	617031	PRPF38A, PRP38A	Precursor mRNA-processing factor 38, S. cerevisiae, homolog of, A	PRPF38A	84950	ENSG00000134748			Prpf38a (MGI:1916962)
chr1	52423274	52553462	1q23.3	1p32.3	613692	ZCCHC11, KIAA0191	Zinc finger CCHC domain-containing protein 11	ZCCHC11	23318	ENSG00000134744			Zcchc11 (MGI:2445126)
chr1	52602370	52609050	1p32	1p32.3	615784	GPX7, NPGPX	Glutathione peroxidase 7	GPX7	2882	ENSG00000116157			Gpx7 (MGI:1914555)
chr1	52686341	52698365	1p32.3	1p32.3	615623	COA7, RESA1, SELRC1, C1orf163	Cytochrome C oxidase assembly factor	COA7	65260	ENSG00000162377	mutation identified in 1 COX4D patient	?Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Coa7 (MGI:1917143)
chr1	52927228	53051616	1p32	1p32.3	184755	SCP2	Sterol carrier protein-2	SCP2	6342	ENSG00000116171	mutation identified in 1 LKDMN patient	?Leukoencephalopathy with dystonia and motor neuropathy, 613724 (3), Autosomal recessive	Scp2 (MGI:98254)
chr1	53062051	53085501	1p32.3	1p32.3	608661	PODN	Podocan	PODN	127435	ENSG00000174348			Podn (MGI:2674939)
chr1	53196428	53214196	1p32	1p32.3	600650	CPT2, IIAE4	Carnitine palmitoyltransferase II	CPT2	1376	ENSG00000157184	formerly at 1p13	CPT II deficiency, infantile, 600649 (3), Autosomal recessive; CPT II deficiency, lethal neonatal, 608836 (3), Autosomal recessive; CPT II deficiency, myopathic, stress-induced, 255110 (3), Autosomal recessive, Autosomal dominant; {Encephalopathy, acute, infection-induced, 4, susceptibility to}, 614212 (3), Autosomal recessive, Autosomal dominant	Cpt2 (MGI:109176)
chr1	53226891	53238609	1p34-p33	1p32.3	602603	MAGOH	Mago nashi, Drosophila, homolog of, proliferation-associated	MAGOH	4116	ENSG00000162385			Magoh (MGI:1330312)
chr1	53242363	53328148	1p34	1p32.3	602600	LRP8, APOER2, MCI1	Low density lipoprotein receptor-related protein 8 (Apolipoprotein E receptor 2)	LRP8	7804	ENSG00000157193		{Myocardial infarction, susceptibility to}, 608446 (3)	Lrp8 (MGI:1340044)
chr1	53459398	53467487	1p32.2	1p32.3	614805	DMRTB1	Doublesex- and MAB3-related transcription factor B1	DMRTB1	63948	ENSG00000143006			Dmrtb1 (MGI:1927125)
chr1	53506232	53739170	1p32.3	1p32.3	610378	GLIS1	Glis family zinc finger protein 1	GLIS1	148979	ENSG00000174332			Glis1 (MGI:2386723)
chr1	53765459	53838551	1p32.3	1p32.3	610115	TMEM48, NDC1	Transmembrane protein 48	NDC1	55706	ENSG00000058804			Ndc1 (MGI:1920037)
chr1	53851718	53889830	1p32.3	1p32.3	617521	YIPF1	YIP1 domain family, member 1	YIPF1	54432	ENSG00000058799			Yipf1 (MGI:1915532)
chr1	53894186	53911085	1p33-p32	1p32.3	147892	DIO1, TXDI1	Deiodinase, iodothyronine, type I	DIO1	1733	ENSG00000211452			Dio1 (MGI:94896)
chr1	54026680	54053572	1p32.3	1p32.3	617084	TMEM59, DCF1	Transmembrane protein 59	TMEM59	9528	ENSG00000116209			Tmem59 (MGI:1929278)
chr1	54132719	54153180	1p32	1p32.3	612320	CDCP2	Cub domain-containing protein 2	CDCP2	200008	ENSG00000157211	?associated with PARK10		Cdcp2 (MGI:3045328)
chr1	54200166	54225488	1p32.1	1p32.3	611843	MRPL37	Mitochondrial ribosomal protein L37	MRPL37	51253	ENSG00000116221			Mrpl37 (MGI:1926268)
chr1	54225430	54413478	1p31.3	1p32.3	607390	SSBP3	Single-stranded DNA-binding protein 3	SSBP3	23648	ENSG00000157216			Ssbp3 (MGI:1919725)
chr1	54548133	54634743	1p32.3	1p32.3	606803	ACOT11, THEA, BFIT, BFIT1, BFIT2, KIAA0707	Acyl-CoA thioesterase 11	ACOT11	26027	ENSG00000162390			Acot11 (MGI:1913736)
chr1	54715821	54742656	1p31.3	1p32.3	606753	TTC4	Tetratricopeptide repeat domain 4	TTC4	7268	ENSG00000243725	pseudogene on 7p14-p13		Ttc4 (MGI:1919604)
chr1	54756897	54764552	1p32.2	1p32.3	612036	PARS2	Prolyl-tRNA synthetase 2	PARS2	25973	ENSG00000162396			Pars2 (MGI:2386296)
chr1	54806062	54842263	1p32.3	1p32.3	616446	LEXM, C1orf177, LEM	Lymphocyte expansion molecule	LEXM	163747	ENSG00000162398			Lexm (MGI:2681853)
chr1	54849626	54887247	1p33-p31.1	1p32.3	606418	DHCR24, KIAA0018	24-dehydrocholesterol reductase	DHCR24	1718	ENSG00000116133		Desmosterolosis, 602398 (3), Autosomal recessive	Dhcr24 (MGI:1922004)
chr1	54998943	55008791	1p31	1p32.3	606412	BSND	Barttin	BSND	7809	ENSG00000162399		Bartter syndrome, type 4a, 602522 (3), Autosomal recessive; Sensorineural deafness with mild renal dysfunction, 602522 (3), Autosomal recessive	Bsnd (MGI:2153465)
chr1	55039475	55064852	1p32.3	1p32.3	607786	PCSK9, NARC1, HCHOLA3, FH3, LDLCQ1	Proprotein convertase, subtilisin/kexin-type, 9	PCSK9	255738	ENSG00000169174		Hypercholesterolemia, familial, 3, 603776 (3); {Low density lipoprotein cholesterol level QTL 1}, 603776 (3)	Pcsk9 (MGI:2140260)
chr1	55066358	55215373	1p32.3	1p32.3	610569	USP24, KIAA1057	Ubiquitin-specific protease 24	USP24	23358	ENSG00000162402			Usp24 (MGI:1919936)
chr1	56494746	56579583	1p32.2	1p32.2	607125	PLPP3, PPAP2B	Phospholipid phosphatase 3	PLPP3	8613	ENSG00000162407			Plpp3 (MGI:1915166)
chr1	56645316	56715334	1p31	1p32.2	600497	PRKAA2, AMPK	Protein kinase, AMP-activated, alpha-2 catalytic subunit	PRKAA2	5563	ENSG00000162409			Prkaa2 (MGI:1336173)
chr1	56854769	56918220	1p32	1p32.2	120950	C8A	Complement component-8, alpha polypeptide	C8A	731	ENSG00000157131		C8 deficiency, type I, 613790 (3), Autosomal recessive	C8a (MGI:2668347)
chr1	56929209	56974382	1p32	1p32.2	120960	C8B	Complement component-8, beta polypeptide	C8B	732	ENSG00000021852		C8 deficiency, type II, 613789 (3), Autosomal recessive	C8b (MGI:88236)
chr1	56994777	58250546	1p32-p31	1p32.2	603448	DAB1, SCA37	Disabled, Drosophila, homolog 1	DAB1	1600	ENSG00000173406		Spinocerebellar ataxia 37, 615945 (3), Autosomal dominant	Dab1 (MGI:108554)
chr1	58480718	58546798	1p32.3-p32.1	1p32.2-p32.1	617081	OMA1, MPRP1	OMA1 zinc metallopeptidase	OMA1	115209	ENSG00000162600			Oma1 (MGI:1914263)
chr1	58575422	58577493	1p32	1p32.1	137290	TACSTD2, TROP2, M1S1	Tumor-associated calcium signal transducer 2	TACSTD2	4070	ENSG00000184292		Corneal dystrophy, gelatinous drop-like, 204870 (3), Autosomal recessive	Tacstd2 (MGI:1861606)
chr1	58654738	58700090	1p32.1	1p32.1	612176	MYSM1, 2ADUB, KIAA1915	MYB-like, SWIRM, and MPN domains-containing protein 1	MYSM1	114803	ENSG00000162601			Mysm1 (MGI:2444584)
chr1	58780790	58784112	1p32-p31	1p32.1	165160	JUN	Avian sarcoma virus 17 (v-jun) oncogene homolog	JUN	3725	ENSG00000177606			Jun (MGI:96646)
chr1	59296404	59762729	1p32.1	1p32.1	611370	FGGY, FLJ10986	FGGY carbohydrate kinase domain-containing protein	FGGY	55277	ENSG00000172456			Fggy (MGI:1922828)
chr1	59814860	59876377	1p32.1	1p32.1	607820	HOOK1, HK1	Hook, Drosophila, homolog of, 1	HOOK1	51361	ENSG00000134709			Hook1 (MGI:1925213)
chr1	59893307	59926797	1p31.3-p31.2	1p32.1	601258	CYP2J2	Cytochrome P450, subfamily IIJ (arachidonic acid epoxygenase), polypeptide 2	CYP2J2	1573	ENSG00000134716			Cyp2j6 (MGI:1270148)
chr1	60800000	84400000	1p31		601676	AIR	Acute insulin response		7808			Acute insulin response, 601676 (2)	
chr1	60800000	84400000	1p31		610906	ASRT4	Asthma-related traits, susceptibility to, 4		100188823		max lod at D1S2890	{Asthma-related traits, susceptibility to, 4}, 610906 (2)	
chr1	60800000	106700000	1p31-p21		606215	AVSD1, AVCD	Atrioventricular septal defect, susceptibility to, 1	AVSD1	7446			{Atrioventricular septal defect, susceptibility to, 1}, 606215 (2)	
chr1	60800000	84400000	1p31		615892	OFC14	Orofacial cleft 14		103581096			Orofacial cleft 14, 615892 (2), Autosomal recessive	
chr1	60800000	68500000	1p31.3		164750	OPHLC, C1DUPp31.3, DUP1p31.3	Omphalocele due to duplication of 1p31.3				duplication of 710kb at 1p31.3	Omphalocele due to duplication of 1p31.3, 164750 (4), Autosomal dominant	
chr1	60800000	84400000	1p31		606787	PAOD1	Peripheral arterial occlusive disease 1		171513			Peripheral arterial occlusive disease 1, 606787 (2)	
chr1	60800000	84400000	1p31.3-p31.1		612293	POROK5, DSAP3	Porokeratosis 5, disseminated superficial actinic		100190982		between D1S438 and D1S464	Porokeratosis 5, disseminated superficial actinic, 612293 (2)	
chr1	61077256	61462787	1p31.3-p31.2	1p31.3	600727	NFIA, BRMUTD	Nuclear factor I/A	NFIA	4774	ENSG00000162599		Brain malformations with or without urinary tract defects, 613735 (3), Isolated cases	Nfia (MGI:108056)
chr1	61681046	61725422	1p31.3	1p31.3	610080	TM2D1, BBP	TM2 domain-containing protein 1	TM2D1	83941	ENSG00000162604			Tm2d1 (MGI:2137022)
chr1	61742465	62163919	1p31.3	1p31.3	603199	INADL, PATJ	INAD, Drosophila, homolog of	PATJ	10207	ENSG00000132849			Patj (MGI:1277960)
chr1	62236164	62319413	1p31.3	1p31.3	614612	KANK4	KN motif- and ankyrin repeat domain-containing protein 4	KANK4	163782	ENSG00000132854			Kank4 (MGI:3043381)
chr1	62436303	62451803	1p32.1-p31.3	1p31.3	603478	USP1	Ubiquitin-specific protease 1	USP1	7398	ENSG00000162607			Usp1 (MGI:2385198)
chr1	62454725	62688367	1p31.3	1p31.3	615730	DOCK7, KIAA1771, EIEE23	Dedicator of cytokinesis 7	DOCK7	85440	ENSG00000116641		Epileptic encephalopathy, early infantile, 23, 615859 (3), Autosomal recessive	Dock7 (MGI:1914549)
chr1	62597486	62606304	1p31	1p31.3	604774	ANGPTL3, ANGPT5, FHBL2	Angiopoietin-like 3	ANGPTL3	27329	ENSG00000132855		Hypobetalipoproteinemia, familial, 2, 605019 (3), Autosomal recessive	Angptl3 (MGI:1353627)
chr1	62783764	62865269	1p31.3	1p31.3	611339	ATG4C, APG4C	Autophagy 4, S. cerevisiae, homolog of, C	ATG4C	84938	ENSG00000125703			Atg4c (MGI:2651854)
chr1	63323058	63325125	1p31	1p31.3	611539	FOXD3, AIS1, VAMAS2	Forkhead box D3	FOXD3	27022	ENSG00000187140		{Autoimmune disease, susceptibility to, 1}, 607836 (3), Autosomal dominant	Foxd3 (MGI:1347473)
chr1	63367589	63438561	1p22.3	1p31.3	604566	ALG6, CDG1C	Alg6, S. cerevisiae, homolog of	ALG6	29929	ENSG00000088035		Congenital disorder of glycosylation, type Ic, 603147 (3), Autosomal recessive	Alg6 (MGI:2444031)
chr1	63440769	63529394	1p31.3	1p31.3	605494	ITGB3BP, NRIF3	Integrin, beta-3, binding protein of	ITGB3BP	23421	ENSG00000142856			Itgb3bp (MGI:1914983)
chr1	63523300	63585400	1p31.3	1p31.3	617632	EFCAB7, KIAA1799	EF-hand calcium-binding domain-containing protein 7	EFCAB7	84455	ENSG00000203965			Efcab7 (MGI:2385199)
chr1	63593275	63660244	1p31	1p31.3	171900	PGM1, GSD14, CDG1T	Phosphoglucomutase-1	PGM1	5236	ENSG00000079739	distal to ACADM; formerly 1p22.1	Congenital disorder of glycosylation, type It, 614921 (3), Autosomal recessive	Pgm2 (MGI:97565)
chr1	63774018	64181497	1p31.3	1p31.3	602336	ROR1, NTRKR1	Receptor tyrosine kinase-like orphan receptor 1	ROR1	4919	ENSG00000185483	mutation identified in 1 DFNB108 family	?Deafness, autosomal recessive 108, 617654 (3), Autosomal recessive	Ror1 (MGI:1347520)
chr1	64744978	64833410	1p31.3	1p31.3	609953	RAVER2, KIAA1579	Raver2, mouse, homolog of	RAVER2	55225	ENSG00000162437			Raver2 (MGI:2443623)
chr1	64833222	65067745	1p31.3	1p31.3	147795	JAK1	Janus kinase 1 (a protein-tyrosine kinase)	JAK1	3716	ENSG00000162434	related gene on 9p24		Jak1 (MGI:96628)
chr1	65058433	65058507	1p31.3	1p31.3	612511	MIR101-1, MIRN101-1	Micro RNA 101-1	MIR101-1	406893		another locus, MIRN101-2, on 9p24		
chr1	65147341	65232144	1p31.3	1p31.3	103030	AK3	Adenylate kinase-3, mitochondrial	AK4	205	ENSG00000162433			Ak4 (MGI:87979)
chr1	65264693	65415868	1p32.1-p31.3	1p31.3	608375	DNAJC6, DJC6, KIAA0473, PARK19	DNAJ, E. coli, homolog of, subfamily C, member 6	DNAJC6	9829	ENSG00000116675		Parkinson disease 19a, juvenile-onset, 615528 (3), Autosomal recessive; Parkinson disease 19b, early-onset, 615528 (3), Autosomal recessive	Dnajc6 (MGI:1919935)
chr1	65420447	65436006	1p31	1p31.3	613461	LEPROT, OBRGRP	Leptin receptor overlapping transcript	LEPROT	54741	ENSG00000213625	transcribed in same direction as LEPR		Leprot (MGI:2687005)
chr1	65420651	65637492	1p31	1p31.3	601007	LEPR, OBR, LEPRD	Leptin receptor	LEPR	3953	ENSG00000116678		Obesity, morbid, due to leptin receptor deficiency, 614963 (3)	Lepr (MGI:104993)
chr1	65792509	66374578	1p31	1p31.3	600127	PDE4B, DPDE4	Phosphodiesterase-4B, cAMP-specific (dunce-like phosphodiesterase E4)	PDE4B	5142	ENSG00000184588			Pde4b (MGI:99557)
chr1	66533271	66751138	1p31.3	1p31.3	611540	SGIP1	SH3-domain GRB2-like (endophilin)-interacting protein 1	SGIP1	84251	ENSG00000118473			Sgip1 (MGI:1920344)
chr1	66797740	66801258	1p31.1-p22.3	1p31.3	606413	INSL5	Insulin-like 5	INSL5	10022	ENSG00000172410			Insl5 (MGI:1346085)
chr1	66924894	66988618	1p31.3	1p31.3	616848	MEIR1, KIAA1610	Mesoderm induction-early response protein 1	MIER1	57708	ENSG00000198160			Mier1 (MGI:1918398)
chr1	66999331	67054422	1p32-p31	1p31.3	610804	SLC35D1, UGTREL7, KIAA0260, SHNKND	Solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1	SLC35D1	23169	ENSG00000116704		Schneckenbecken dysplasia, 269250 (3), Autosomal recessive	Slc35d1 (MGI:2140361)
chr1	67138638	67259978	1p31.3	1p31.3	607562	IL23R, IBD17	Interleukin 23 receptor	IL23R	149233	ENSG00000162594		{Inflammatory bowel disease 17, protection against}, 612261 (3); {Psoriasis, protection against}, 605606 (3)	Il23r (MGI:2181693)
chr1	67307350	67397729	1p31.2	1p31.3	601642	IL12RB2	Interleukin 12 receptor, beta-2	IL12RB2	3595	ENSG00000081985			Il12rb2 (MGI:1270861)
chr1	67407809	67430439	1p31.3	1p31.3	607378	SERBP1, PAIRBP1	Serpine1 mRNA-binding protein 1	SERBP1	26135	ENSG00000142864			Serbp1 (MGI:1914120)
chr1	67685176	67688337	1p34-p12	1p31.3	126335	DDIT1, GADD45	DNA damage-inducible transcript-1	GADD45A	1647	ENSG00000116717			Gadd45a (MGI:107799)
chr1	67701465	67833471	1p31.3	1p31.3	615405	GNG12	Guanine nucleotide-binding protein, gamma 12	GNG12	55970	ENSG00000172380			Gng12 (MGI:1336171)
chr1	67832287	68202986	1p31.3	1p31.3	615406	GNG12AS1	GNG12 antisense RNA 1	GNG12-AS1	100289178				
chr1	68045961	68051630	1p31.3	1p31.3	605193	DIRAS3, ARHI	DIRAS family, GTP-binding RAS-like protein 3	DIRAS3	9077	ENSG00000162595			
chr1	68098458	68233017	1p31.3	1p31.3	611514	WLS, GPR177, EVI	WNTless, Drosophila, homolog of	WLS	79971	ENSG00000116729			Wls (MGI:1915401)
chr1	68428821	68450321	1p31	1p31.3	180069	RPE65, RP20, LCA2	Retinal pigment epithelium-specific protein, 65kD	RPE65	6121	ENSG00000116745		Leber congenital amaurosis 2, 204100 (3), Autosomal recessive; Retinitis pigmentosa 20, 613794 (3), Autosomal recessive	Rpe65 (MGI:98001)
chr1	68474151	68497220	1p31.2	1p31.3	612002	DEPDC1	DEP domain-containing 1	DEPDC1	55635	ENSG00000024526			Depdc1a (MGI:1923381)
chr1	68500000	69300000	1p31.2		613008	PBC3	Biliary cirrhosis, primary, 3		100303717		associated with rs3790567	{Biliary cirrhosis, primary, 3}, 613008 (2)	
chr1	69300000	106700000	1p31.1-p21.1		609727	SPG29	Spastic paraplegia 29, autosomal dominant	SPG29	619379		max lod at D1S2865	Spastic paraplegia 29, autosomal dominant, 609727 (2), Autosomal dominant	
chr1	69567129	70152425	1p31.1	1p31.1	614453	LRRC7, DENSIN, KIAA1365	Leucine-rich repeat-containing protein 7	LRRC7	57554	ENSG00000033122			Lrrc7 (MGI:2676665)
chr1	69919321	69920316	1p31	1p31.1	602051	PIN1L	Peptidyl-prolyl cis/trans isomerase, NIMA-interacting-like	PIN1P1	5301		?transcribed pseudogene		
chr1	70205681	70253051	1p31.1	1p31.1	602010	SRSF11, SFRS11	Splicing factor, serine/arginine-rich, 11	SRSF11	9295	ENSG00000116754			Srsf11 (MGI:1916457)
chr1	70259001	70354976	1p31.1	1p31.1	615125	ANKRD13C	Ankyrin repeat domain-containing protein 13C	ANKRD13C	81573	ENSG00000118454			Ankrd13c (MGI:2139746)
chr1	70353838	70368022	1p31.1	1p31.1	604372	HHLA3	Human endogenous retrovirus-H long terminal repeat-associating 3	HHLA3	11147	ENSG00000197568			
chr1	70411217	70441948	1p31.1	1p31.1	607657	CTH	Cystathionine gamma-lyase	CTH	1491	ENSG00000116761	previously assigned to chr.16	Cystathioninuria, 219500 (3), Autosomal recessive; Homocysteine, total plasma, elevated (3)	Cth (MGI:1339968)
chr1	70852352	71047807	1p31.2	1p31.1	176806	PTGER3, EP3	Prostaglandin E receptor 3, EP3 subtype	PTGER3	5733	ENSG00000050628			Ptger3 (MGI:97795)
chr1	71063290	71081288	1p22.1-p21.3	1p31.1	604347	ZRANB2, ZNF265, ZIS	Zinc finger RANBP2-type domain-containing protein 2	ZRANB2	9406	ENSG00000132485			
chr1	71402941	72282593	1p31.1	1p31.1	613173	NEGR1, KILON	Neuronal growth regulator 1	NEGR1	257194	ENSG00000172260			Negr1 (MGI:2444846)
chr1	74198211	74208701	1p31.1	1p31.1	603609	FPGT, GFPP	Fucose-1-phosphate guanylyltransferase	FPGT	8790	ENSG00000254685			Fpgt (MGI:1922790)
chr1	74235386	74544431	1p31.1	1p31.1	613932	TNNI3K, CCDD	TNNI3-interacting kinase	TNNI3K	51086	ENSG00000116783	mutation identified in 1 CCDD family	?Cardiac conduction disease with or without dilated cardiomyopathy, 616117 (3), Autosomal dominant	Tnni3k (MGI:2443276)
chr1	74705469	74733407	1p31-p22	1p31.1	123691	CRYZ	Crystallin, zeta (quinone reductase)	CRYZ	1429	ENSG00000116791			Cryz (MGI:88527)
chr1	74733151	74766676	1p31.3	1p31.1	611245	TYW3	tRNA-wybutosine-synthesizing protein 3, S. cerevisiae, homolog of	TYW3	127253	ENSG00000162623			Tyw3 (MGI:2445040)
chr1	75128433	75199453	1p31.1	1p31.1	604425	LHX8	LIM homeobox 8	LHX8	431707	ENSG00000162624			Lhx8 (MGI:1096343)
chr1	75724346	75763678	1p31	1p31.1	607008	ACADM, MCAD	Acyl-Coenzyme A dehydrogenase, C-4 to C-12 straight chain	ACADM	34	ENSG00000117054		Acyl-CoA dehydrogenase, medium chain, deficiency of, 201450 (3), Autosomal recessive	Acadm (MGI:87867)
chr1	75786193	75795089	1p31	1p31.1	179080	RABGGTB	Rab geranylgeranyltransferase, beta subunit	RABGGTB	5876	ENSG00000137955			Rabggtb (MGI:99537)
chr1	75796870	75913237	1p31	1p31.1	602105	MSH4	mutS, E. coli, homolog of, 4	MSH4	4438	ENSG00000057468			Msh4 (MGI:1860077)
chr1	76074683	76637315	1p31.1	1p31.1	610133	ST6GALNAC3, SIAT7C	ST6 alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	ST6GALNAC3	256435	ENSG00000184005			St6galnac3 (MGI:1341828)
chr1	76867407	77069166	1p31.1	1p31.1	610134	ST6GALNAC5, SIAT7E	ST6 alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetylgalactosaminide alpha-2,6 sialyltransferase 5	ST6GALNAC5	81849	ENSG00000117069			St6galnac5 (MGI:1349471)
chr1	77088980	77219446	1p31.1	1p31.1	605087	PIGK, GPI8	Phosphatidylinositol glycan, class K	PIGK	10026	ENSG00000142892			Pigk (MGI:1913863)
chr1	77281907	77559968	1p31	1p31.1	608009	AK5	Adenylate kinase 5	AK5	26289	ENSG00000154027			Ak5 (MGI:2677491)
chr1	77695986	77759878	1p31.1	1p31.1	615146	USP33, VDU1	Ubiquitin-specific protease 33	USP33	23032	ENSG00000077254			Usp33 (MGI:2159711)
chr1	77779623	77879539	1p31.1	1p31.1	616773	FAM73A, MIGA1	Miga, Drosophila, homolog of, 1	MIGA1	374986	ENSG00000180488			Miga1 (MGI:1924567)
chr1	77888514	77948642	1p32-p31	1p31.1	613121	NEXN, NELIN, CMD1CC, CMH20	Nexilin, rat, homolog of	NEXN	91624	ENSG00000162614		Cardiomyopathy, dilated, 1CC, 613122 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 20, 613876 (3), Autosomal dominant	Nexn (MGI:1916060)
chr1	77944050	77979434	1p31.1	1p31.1	603444	FUBP1, FUBP, FBP	Far upstream element-binding protein 1	FUBP1	8880	ENSG00000162613			Fubp1 (MGI:1196294)
chr1	77979157	78017963	1p31.1	1p31.1	611327	DNAJB4, HLJ1	DNAJ/HSP40 homolog, subfamily B, member 4	DNAJB4	11080	ENSG00000162616			Dnajb4 (MGI:1914285)
chr1	78490973	78540700	1p31.1	1p31.1	600563	PTGFR	Prostaglandin F receptor (FP)	PTGFR	5737	ENSG00000122420			Ptgfr (MGI:97796)
chr1	78620381	78646144	1p31.1	1p31.1	613975	IFI44L	Interferon-induced protein 44-like	IFI44L	10964	ENSG00000137959			Ifi44l (MGI:95975)
chr1	78648942	78664077	1p31.1	1p31.1	610468	IFI44, P44	Interferon-induced protein 44	IFI44	10561	ENSG00000137965			Ifi44 (MGI:2443016)
chr1	78889763	79006809	1p31.1	1p31.1	616419	ADGRL4, ETL, ELTD1	Adhesion G protein-coupled receptor L4	ADGRL4	64123	ENSG00000162618			Adgrl4 (MGI:2655562)
chr1	81306103	81993931	1p31.1	1p31.1	607018	ADGRL2, LPHN2, LPHH1, CIRL2, CL2, KIAA0786	Adhesion G protein-coupled receptor L2	ADGRL2	23266	ENSG00000117114			Adgrl2 (MGI:2139714)
chr1	84077974	84238497	1p31.1	1p31.1	176892	PRKACB	Protein kinase, cAMP-dependent, catalytic, beta	PRKACB	5567	ENSG00000142875			Prkacb (MGI:97594)
chr1	84398531	84415894	1p22.3	1p31.1-p22.3	608057	DNASE2B, DLAD	Deoxyribonuclease II beta	DNASE2B	58511	ENSG00000137976			Dnase2b (MGI:1913283)
chr1	84400000	94300000	1p22		608035	CMM4	Melanoma, cutaneous malignant, 4		474388		between D1S430 and D1S2664	{Melanoma, cutaneous malignant, 4}, 608035 (2)	
chr1	84400000	94300000	1p22		611381	KAZA2	Kala-azar, susceptibility to, 2		101241898			{Kala-azar, susceptibility to, 2}, 611381 (2)	
chr1	84400000	94300000	1p22		191540	UOX	Urate oxidase, pseudogene	UOX	391051		nonsense mutations responsible for absence of enzyme in man and hominoid primates	[Urate oxidase deficiency] (1)	
chr1	84498322	84506578	1p22	1p22.3	600874	GNG5	Guanine nucleotide-binding protein (G protein), gamma 5	GNG5	2787	ENSG00000174021			Gng5,Gng5-ps (MGI:3783217,MGI:109164)
chr1	84553120	84574479	1p22	1p22.3	600873	CTBS, CTB	Chitobiase, di-N-acetyl-	CTBS	1486	ENSG00000117151			Ctbs (MGI:1921495)
chr1	84811600	84893212	1p31.1-p22.3	1p22.3	605106	LPAR3, EDG7, LPA3	Lysophosphatidic acid receptor 3	LPAR3	23566	ENSG00000171517			Lpar3 (MGI:1929469)
chr1	84925582	84997121	1p22	1p22.3	607399	MCOLN2	Mucolipin 2	MCOLN2	255231	ENSG00000153898	incorrectly assigned to chr.3		Mcoln2 (MGI:1915529)
chr1	85018081	85048901	1p22.3	1p22.3	607400	MCOLN3	Mucolipin 3	MCOLN3	55283	ENSG00000055732			Mcoln3 (MGI:1890500)
chr1	85265775	85276903	1p22	1p22.3	603517	BCL10, IMD37	B-cell leukemia/lymphoma 10	BCL10	8915	ENSG00000142867	mutation identified in 1 IMD37 patient	?Immunodeficiency 37, 616098 (3), Autosomal recessive; Lymphoma, MALT, somatic, 137245 (3); {Lymphoma, follicular, somatic}, 605027 (3); {Male germ cell tumor, somatic},, 273300 (3); {Mesothelioma, somatic}, 156240 (3); {Sezary syndrome, somatic} (3)	Bcl10 (MGI:1337994)
chr1	85318484	85578362	1p22	1p22.3	604743	DDAH1	Dimethylarginine dimethylaminohydrolase-1	DDAH1	23576	ENSG00000153904			Ddah1 (MGI:1916469)
chr1	85580760	85583966	1p22.3	1p22.3	602369	CYR61, IGFBP10	Cysteine-rich angiogenic inducer, 61 (insulin-like growth factor-binding protein-10)	CYR61	3491	ENSG00000142871			Cyr61 (MGI:88613)
chr1	85728506	86157035	1p22.3	1p22.3	610025	COL24A1	Collagen, type XXIV, alpha-1	COL24A1	255631	ENSG00000171502			Col24a1 (MGI:1918605)
chr1	86423882	86456557	1p22.3	1p22.3	604003	CLCA2	Chloride channel accessory 2	CLCA2	9635	ENSG00000137975			Clca2 (MGI:2139758)
chr1	86468842	86500293	1p22.3	1p22.3	603906	CLCA1, CACC1	Chloride channel accessory 1	CLCA1	1179	ENSG00000016490			Clca1 (MGI:1346342)
chr1	86547075	86580757	1p22.3	1p22.3	616857	CLCA4, CACC2	Chloride channel accessory 4	CLCA4	22802	ENSG00000016602			Clca4b,Clca4a (MGI:2139790,MGI:2139744)
chr1	86634275	86655375	1p22.32	1p22.3	604337	CLCA3	Chloride channel accessory 3	CLCA3P	9629				
chr1	86862444	86914576	1p31	1p22.3	606254	SELENOF, SEP15	Selenoprotein F	SELENOF	9403	ENSG00000183291			Selenof (MGI:1927947)
chr1	86914651	87109997	1p22	1p22.3	604844	HS2ST1	Heparan sulfate 2-O-sulfotransferase 1	HS2ST1	9653	ENSG00000153936			Hs2st1 (MGI:1346049)
chr1	87328467	87348922	1p22.3	1p22.3	603129	LMO4	LIM domain only 4	LMO4	8543	ENSG00000143013			Lmo4 (MGI:109360)
chr1	88684143	88836254	1p22.2	1p22.2	602549	PKN2, PRKCL2, PRK2, PAK2	Protein kinase N2	PKN2	5586	ENSG00000065243			Pkn2 (MGI:109211)
chr1	88852637	88891943	1p22.2	1p22.2	189963	GTF2B, TFIIB, TF2B	General transcription factor IIb	GTF2B	2959	ENSG00000137947			Gtf2b (MGI:2385191)
chr1	88921043	88992959	1p22.2	1p22.2	610656	CCBL2, KAT3	Cysteine conjugate beta-lyase 2	KYAT3	56267	ENSG00000137944			Kyat3 (MGI:2677849)
chr1	89006676	89022869	1p22.2	1p22.2	600413	GBP3	Guanylate-binding protein 3	GBP3	2635	ENSG00000117226			Gbp2b (MGI:95666)
chr1	89052303	89065359	1p22.2	1p22.2	600411	GBP1	Guanylate binding protein 1, interferon-inducible, 67kD	GBP1	2633	ENSG00000117228			
chr1	89106131	89126158	1p22.2	1p22.2	600412	GBP2	Guanylate-binding protein 2, interferon-inducible	GBP2	2634	ENSG00000162645			Gbp2 (MGI:102772)
chr1	89131750	89176039	1p22.2	1p22.2	612468	GBP7	Guanylate-binding protein 7	GBP7	388646	ENSG00000213512			Gbp7 (MGI:2444421)
chr1	89181147	89198949	1p22.2	1p22.2	612466	GBP4	Guanylate-binding protein 4	GBP4	115361	ENSG00000162654			Gbp3 (MGI:1926263)
chr1	89258949	89272860	1p22.2	1p22.2	611467	GBP5	Guanylate-binding protein 5	GBP5	115362	ENSG00000154451			Gbp5 (MGI:2429943)
chr1	89363876	89388159	1p22.2	1p22.2	612467	GBP6	Guanylate-binding protein 6	GBP6	163351	ENSG00000183347			Gbp6,Gbp10,Gbp11,Gbp9,Gbp4 (MGI:3605620,MGI:3646307,MGI:97072,MGI:4359647,MGI:2140937)
chr1	89522625	89597860	1p22.2	1p22.2	612888	LRRC8B, TALRRP, KIAA0231	Leucine-rich repeat-containing protein 8B	LRRC8B	23507	ENSG00000197147			Lrrc8b (MGI:2141353)
chr1	89615809	89719534	1p22.2	1p22.2	612889	LRRC8C, FAD158, AD158	Leucine-rich repeat-containing protein 8C	LRRC8C	84230	ENSG00000171488			Lrrc8c (MGI:2140839)
chr1	89821013	89936431	1p22.2	1p22.2	612890	LRRC8D, LRRC5	Leucine-rich repeat-containing protein 8D	LRRC8D	55144	ENSG00000171492			Lrrc8d (MGI:1922368)
chr1	89995094	90035530	1p22.2	1p22.2	614601	ZNF326, ZIRD	Zinc finger protein 326	ZNF326	284695	ENSG00000162664			Zfp326 (MGI:1927246)
chr1	90712021	90717236	1p22.3	1p22.2	605212	BARHL2	BARH-like 2	BARHL2	343472	ENSG00000143032			Barhl2 (MGI:1859314)
chr1	90915297	91022266	1p22.2	1p22.2	614159	ZNF644, MYP21	Zinc finger protein 644	ZNF644	84146	ENSG00000122482		Myopia 21, autosomal dominant, 614167 (3), Autosomal dominant	Zfp644 (MGI:1277212)
chr1	91260765	91408007	1p22.2	1p22.2	615684	HFM1, MER3, POF9	Hfm1, ATP-dependent DNA helicase, S. cerevisiae, homolog of	HFM1	164045	ENSG00000162669		Premature ovarian failure 9, 615724 (3), Autosomal recessive	Hfm1 (MGI:3036246)
chr1	91498967	91525763	1p22	1p22.2-p22.1	603311	CDC7L1, CDC7	Cell division cycle 7, S. Cerevisiae, homolog-like 1	CDC7	8317	ENSG00000097046			Cdc7 (MGI:1309511)
chr1	91500000	111200000	1p22.1-p13.3		608653	DFNB32	Deafness, autosomal recessive 32	DFNB32	113877		max lod at D1S21401	Deafness, autosomal recessive 32, 608653 (2), Autosomal recessive	
chr1	91680342	91906001	1p33-p32	1p22.1	600742	TGFBR3	Transforming growth factor, beta receptor III (betaglycan, 300kD)	TGFBR3	7049	ENSG00000069702			Tgfbr3 (MGI:104637)
chr1	91949370	92014427	1p22.1	1p22.1	602144	BRDT, SPGF21	Bromodomain, testis-specific	BRDT	676	ENSG00000137948	mutation identified in 1 SPGF21 patient	?Spermatogenic failure 21, 617644 (3), Autosomal recessive	Brdt (MGI:1891374)
chr1	92029975	92063535	1p22.1	1p22.1	617401	EPHX4, ABHD7	Epoxide hydrolase 4	EPHX4	253152	ENSG00000172031			Ephx4 (MGI:2686228)
chr1	92245785	92441935	1p22-p21	1p22.1	601749	GLML, GVM, VMGLOM	Glomulin	GLMN	11146	ENSG00000174842		Glomuvenous malformations, 138000 (3), Autosomal dominant	Glmn (MGI:2141180)
chr1	92298964	92388174	1p22.1	1p22.1	611476	RPAP2, C1orf82	RNA polymerase II-associated protein 2	RPAP2	79871	ENSG00000122484			Rpap2 (MGI:2141142)
chr1	92473042	92486875	1p22	1p22.1	600871	GFI1, ZNF163, SCN2	Growth factor independent 1	GFI1	2672	ENSG00000162676	mutation identified in 1 SCN2 patient and 1 NICINA patient	?Neutropenia, nonimmune chronic idiopathic, of adults, 607847 (3), Autosomal dominant; ?Neutropenia, severe congenital 2, autosomal dominant, 613107 (3), Autosomal dominant	Gfi1 (MGI:103170)
chr1	92508695	92792412	1p22	1p22.1	602942	EVI5, NB4S	Ecotropic viral integration site 5	EVI5	7813	ENSG00000067208			Evi5 (MGI:104736)
chr1	92831985	92841923	1p22.1	1p22.1	603634	RPL5, DBA6	Ribosomal protein L5	RPL5	6125	ENSG00000122406		Diamond-Blackfan anemia 6, 612561 (3), Autosomal dominant	Rpl5 (MGI:102854)
chr1	92832728	92961521	1p22.1	1p22.1	614542	FAM69A	Family with sequence similarity 69, member A	FAM69A	388650	ENSG00000154511			Fam69a (MGI:1914516)
chr1	93079218	93139080	1p22.1	1p22.1	609882	MTF2, PCL2, M96	Metal-regulatory transcription factor 2	MTF2	22823	ENSG00000143033			Mtf2 (MGI:105050)
chr1	93149741	93180688	1p22.1	1p22.1	616876	TMED5	Transmembrane p24 trafficking protein 5	TMED5	50999	ENSG00000117500			Tmed5 (MGI:1921586)
chr1	93345920	93362591	1p22.1	1p22.1	601482	DR1	Down-regulator of transcription 1, TBP-binding (negative cofactor 2)	DR1	1810	ENSG00000117505			Dr1 (MGI:1100515)
chr1	93448066	93569670	1p22.1	1p22.1	608848	FNBP1L, TOCA1, C1orf39	Formin binding protein 1-like	FNBP1L	54874	ENSG00000137942			
chr1	93561740	93847149	1p22.1	1p22.1	604704	BCAR3, SH2D3B, NSP2	Breast cancer antiestrogen resistance 3	BCAR3	8412	ENSG00000137936			Bcar3 (MGI:1352501)
chr1	93869457	93879205	1p22.1	1p22.1	611199	DNTTIP2, ERBP, FCF2	DNTT-interacting protein 2	DNTTIP2	30836	ENSG00000067334			Dnttip2 (MGI:1923173)
chr1	93885198	93910369	1p22.1	1p22.1	601176	GCLM, GLCLR	Glutamate-cysteine ligase, modifier subunit	GCLM	2730	ENSG00000023909		{Myocardial infarction, susceptibility to}, 608446 (3)	Gclm (MGI:104995)
chr1	93992836	94121148	1p22.1	1p22.1	601691	ABCA4, ABCR, STGD1, FFM, RP19, CORD3, ARMD2	ATP-binding transporter, retina-specific	ABCA4	24	ENSG00000198691		Cone-rod dystrophy 3, 604116 (3); Fundus flavimaculatus, 248200 (3), Autosomal recessive; {Macular degeneration, age-related, 2}, 153800 (3), Autosomal dominant; Retinal dystrophy, early-onset severe, 248200 (3), Autosomal recessive; Retinitis pigmentosa 19, 601718 (3), Autosomal recessive; Stargardt disease 1, 248200 (3), Autosomal recessive	Abca4 (MGI:109424)
chr1	94168906	94275067	1p22.1	1p22.1	610496	ARHGAP29, PARG1	RHO GTPase-activating protein 29	ARHGAP29	9411	ENSG00000137962			Arhgap29 (MGI:2443818)
chr1	94300000	111200000	1p21.3-p13.3		609913	RP32	Retinitis pigmentosa-32	RP32	641433		max lod at D1S485	Retinitis pigmentosa 32, 609913 (2)	
chr1	94300000	106700000	1p21		609822	STQTL7	Stature quantitative trait locus 7		100037265		max lod at D1S1631	{Stature QTL 7}, 609822 (2)	
chr1	94300000	111200000	1p21-p13.3		600193	WS2B	Waardenburg syndrome, type 2B	WS2B	7488			Waardenburg syndrome, type 2B, 600193 (2), Autosomal dominant	
chr1	94418085	94518662	1p22-p21	1p21.3	170995	ABCD3, PXMP1, PMP70, CBAS5	ATP-binding cassette, subfamily D, member 3 (peroxisomal membrane protein 1, 70kD)	ABCD3	5825	ENSG00000117528	mutation identified in 1 CBAS5 family	?Bile acid synthesis defect, congenital, 5, 616278 (3), Autosomal recessive	Abcd3 (MGI:1349216)
chr1	94529175	94541856	1p22-p21	1p21.3	134390	F3, TFA	Coagulation factor III	F3	2152	ENSG00000117525			F3 (MGI:88381)
chr1	94896948	94927222	1p22-p21	1p21.3	602374	CNN3	Calponin 3, acidic	CNN3	1266	ENSG00000117519			Cnn3 (MGI:1919244)
chr1	94981564	95072973	1p21.3	1p21.3	612866	ALG14, CMS15	Alg14, S. cerevisiae, homolog of	ALG14	199857	ENSG00000172339	mutation identified in 1 CMSWTA family	?Myasthenic syndrome, congenital, 15, without tubular aggregates, 616227 (3)	Alg14 (MGI:1914039)
chr1	95234154	95247224	1p21.3	1p21.3	615875	RWDD3, RSUME	RWD domain-containing protein 3	RWDD3	25950	ENSG00000122481			Rwdd3 (MGI:1920420)
chr1	96721604	96815048	1p21	1p21.3	608449	PTBP2, NPTB	Polypyrimidine tract-binding protein 2	PTBP2	58155	ENSG00000117569			Ptbp2 (MGI:1860489)
chr1	97077742	97921058	1p22	1p21.3	612779	DPYD, DPD	Dihydropyrimidine dehydrogenase	DPYD	1806	ENSG00000188641		Dihydropyrimidine dehydrogenase deficiency, 274270 (3), Autosomal recessive; 5-fluorouracil toxicity, 274270 (3), Autosomal recessive	Dpyd (MGI:2139667)
chr1	98046069	98046170	1p22	1p21.3	614304	MIR137, MIRN137	Micro RNA 137	MIR137	406928				
chr1	98661283	98760499	1p21.3	1p21.3	614904	SNX7	Sorting nexin 7	SNX7	51375	ENSG00000162627			Snx7 (MGI:1923811)
chr1	98890244	99006129	1p21.3	1p21.3	617287	PLPPR5, LPPR5, PAP2D, PAP2	Phospholipid phosphatase-related protein 5	PLPPR5	163404	ENSG00000117598			Plppr5 (MGI:1923019)
chr1	99262955	99309583	1p21.3	1p21.3-p21.2	607813	PLPPR4, LPPR4, PRG1, KIAA0455	Phospholipid phosphatase-related protein 4	PLPPR4	9890	ENSG00000117600			Plppr4 (MGI:106530)
chr1	99645874	99694540	1p21.2	1p21.2	610182	PALMD, PALML	Palmdelphin	PALMD	54873	ENSG00000099260			Palmd (MGI:2148896)
chr1	99708698	99766629	1p21.2	1p21.2	611578	FRRS1, SDR2	Ferric chelate reductase 1	FRRS1	391059	ENSG00000156869			Frrs1 (MGI:108076)
chr1	99850076	99924022	1p21	1p21.2	610860	AGL, GDE	Amylo-1,6-glucosidase, 4-alpha-glucanotransferase (glycogen debranching enzyme)	AGL	178	ENSG00000162688		Glycogen storage disease IIIa, 232400 (3), Autosomal recessive; Glycogen storage disease IIIb, 232400 (3), Autosomal recessive	Agl (MGI:1924809)
chr1	99968400	100026978	1p21	1p21.2	605632	SLC35A3, AMRS	Solute carrier family 35 (UDP-GlcNAc transporter), member 3	SLC35A3	23443	ENSG00000117620	mutation identified in 1 family	?Arthrogryposis, mental retardation, and seizures, 615553 (3), Autosomal recessive	Slc35a3 (MGI:1917648)
chr1	100082631	100133094	1p21.2	1p21.2	609321	SASS6, SAS6, MCPH14	SAS-6 centriolar assembly protein	SASS6	163786	ENSG00000156876	mutation identified in 1 MCPH14 family	?Microcephaly 14, primary, autosomal recessive, 616402 (3), Autosomal recessive	Sass6 (MGI:1920026)
chr1	100186921	100249863	1p31	1p21.2	248610	DBT, BCATE2	Dihydrolipoamide branched chain transacylase (E2 component of branched chain keto acid dehydrogenase complex)	DBT	1629	ENSG00000137992	pseudogene on 3q24	Maple syrup urine disease, type II, 248600 (3), Autosomal recessive	Dbt (MGI:105386)
chr1	100266157	100292768	1p21.2	1p21.2	611286	RTCD1, RPC	RNA terminal phosphate cyclase domain-containing protein 1	RTCA	8634	ENSG00000137996			Rtca (MGI:1913618)
chr1	100345000	100520280	1p21	1p21.2	603504	CDC14A, DFNB105	Cell division cycle 14, S. cerevisiae, homolog A	CDC14A	8556	ENSG00000079335		Deafness, autosomal recessive 105, 616958 (3), Autosomal recessive	Cdc14a (MGI:2442676)
chr1	100538171	100542026	1p21.2	1p21.2	607468	GPR88, STRG, COCPMR	G protein-coupled receptor 88	GPR88	54112	ENSG00000181656	mutation identified in 1 COCPMR family	?Chorea, childhood-onset, with psychomotor retardation, 616939 (3), Autosomal recessive	Gpr88 (MGI:1927653)
chr1	100719639	100739044	1p32-p31	1p21.2	192225	VCAM1	Vascular cell adhesion molecule-1	VCAM1	7412	ENSG00000162692			Vcam1 (MGI:98926)
chr1	100872371	100895410	1p12-p11	1p21.2	602411	EXTL2	Exostosin-like 2	EXTL2	2135	ENSG00000162694			Extl2 (MGI:1889574)
chr1	100896075	100996912	1p21.2	1p21.2	611149	SLC30A7, ZNT7	Solute carrier family 30 (zinc transporter), member 7	SLC30A7	148867	ENSG00000162695			Slc30a7 (MGI:1913750)
chr1	100975217	101025805	1p21.2	1p21.2	611075	DPH5, HSPC143	DPH5, S. crevisiae, homolog of	DPH5	51611	ENSG00000117543			Dph5 (MGI:1916990)
chr1	101236748	101241519	1p21	1p21.2	601974	S1PR1, EDG1, S1P1	Sphingosine-1-phosphate receptor 1	S1PR1	1901	ENSG00000170989			S1pr1 (MGI:1096355)
chr1	101800000	155100000	1p21.1-q21.3		612841	HYPT5, MUHH2	Hypotrichosis 5		100302560		max lod at D1S2881	Hypotrichosis 5, 612841 (2), Autosomal dominant	
chr1	101800000	111200000	1p21.1-p13.3		611107	MRT4	Mental retardation, autosomal recessive, 4	MRT4	100009675		between D2S429 and D1S187	Mental retardation, autosomal recessive, 4, 611107 (2), Autosomal recessive	
chr1	101800027	101997233	1p21	1p21.1	607567	OLFM3, NOE3	Olfactomedin 3	OLFM3	118427	ENSG00000118733			Olfm3 (MGI:2387329)
chr1	102876466	103108579	1p21	1p21.1	120280	COL11A1, STL2	Collagen XI, alpha-1 polypeptide	COL11A1	1301	ENSG00000060718		Fibrochondrogenesis 1, 228520 (3), Autosomal recessive; {Lumbar disc herniation, susceptibility to}, 603932 (3); Marshall syndrome, 154780 (3), Autosomal dominant; Stickler syndrome, type II, 604841 (3), Autosomal dominant	Col11a1 (MGI:88446)
chr1	103554643	103579533	1p21	1p21.1	104660	AMY2B	Amylase, pancreatic, alpha-2B	AMY2B	280	ENSG00000240038	distal to NGFB		Amy2a2,Amy2a3,Amy2a4,Amy2a5 (MGI:3711220,MGI:3714985,MGI:3711258,MGI:88020)
chr1	103617331	103625779	1p21	1p21.1	104650	AMY2A	Amylase, pancreatic, alpha-2A	AMY2A	279	ENSG00000243480			Amy1 (MGI:88019)
chr1	103655518	103664550	1p21	1p21.1	104700	AMY1A	Amylase, salivary, alpha-1A	AMY1A	276	ENSG00000237763	multiple amylase genes		
chr1	103687414	103696451	1p21	1p21.1	104701	AMY1B	Amylase, salivary, alpha-1B	AMY1B	277	ENSG00000174876			
chr1	103745429	103758691	1p21	1p21.1	104702	AMY1C	Amylase, salivary, alpha-1C	AMY1C	278	ENSG00000174876			
chr1	106700000	111200000	1p13.3		118943	CYMP	Chymosin pseudogene	CYMP	643160				
chr1	106700000	117200000	1p13		193000	VUR	Vesicoureteral reflux		54113			Vesicoureteral reflux, 193000 (2), Autosomal dominant	
chr1	107056644	107059293	1p13.3	1p13.3	608274	PRMT6	Protein arginine N-methyltransferase 6	PRMT6	55170	ENSG00000198890			Prmt6 (MGI:2139971)
chr1	107139917	107484898	1p13.3	1p13.3	608818	NTNG1, LMNT1, KIAA0976	Netrin G1	NTNG1	22854	ENSG00000162631			Ntng1 (MGI:1934028)
chr1	107571159	107964922	1p13.3	1p13.3	605541	VAV3	Vav3 oncogene	VAV3	10451	ENSG00000134215			Vav3 (MGI:1888518)
chr1	108134721	108200357	1p36.13	1p13.3	608744	SLC25A24, SCAMC1	Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24	SLC25A24	29957	ENSG00000085491		Fontaine progeroid syndrome, 612289 (3), Autosomal dominant	Slc25a24 (MGI:1917160)
chr1	108222463	108244080	1p12	1p13.3	613994	NBPF4	Neuroblastoma breakpoint family, member 4	NBPF4	148545	ENSG00000196427			
chr1	108375970	108383613	1p12	1p13.3	613995	NBPF5	Neuroblastoma breakpoint family, member 5	NBPF5P	100507044				
chr1	108421495	108471902	1p12	1p13.3	613996	NBPF6	Neuroblastoma breakpoint family, member 6	NBPF6	653149	ENSG00000186086			
chr1	108648287	108661525	1p13.3	1p13.3	612178	HENMT1, C1orf59, HEN1	Hen1 methyltransferase, arabidopsis, homolog of	HENMT1	113802	ENSG00000162639			Henmt1 (MGI:1913965)
chr1	108875349	108934334	1p13.1	1p13.3	609245	GPSM2, LGN, PINS, DFNB82, CMCS	G protein signaling modulator 2	GPSM2	29899	ENSG00000121957		Chudley-McCullough syndrome, 604213 (3), Autosomal recessive	Gpsm2 (MGI:1923373)
chr1	108929507	108963498	1p13.3	1p13.3	617539	CLCC1, MCLC	Chloride channel CLIC-like 1	CLCC1	23155	ENSG00000121940			Clcc1 (MGI:2385186)
chr1	108970210	109042227	1p13.3	1p13.3	615734	WDR47, NEMITIN, KIAA0893	WD repeat-containing protein 47	WDR47	22911	ENSG00000085433			Wdr47 (MGI:2139593)
chr1	109064375	109076001	1p13.3	1p13.3	600774	TAF13, TAF2K, MRT60	TAF13 RNA polymerase II, TATA box-binding protein-associated factor, 18kD	TAF13	6884	ENSG00000197780		Mental retardation, autosomal recessive 60, 617432 (3), Autosomal recessive	Taf13 (MGI:1913500)
chr1	109113962	109206780	1p13.3	1p13.3	611298	KIAA1324, EIG121	KIAA1324 gene	KIAA1324	57535				5330417C22Rik (MGI:1923930)
chr1	109213892	109238181	1p13	1p13.3	607529	SARS, SERS, NEDMAS	Seryl-tRNA synthetase	SARS	6301	ENSG00000031698	mutation identified in 1 NEDMAS family	?Neurodevelopmental disorder with microcephaly, ataxia, and seizures, 617709 (3), Autosomal recessive	Sars (MGI:102809)
chr1	109250018	109275755	1p21	1p13.3	604265	CELSR2, EGFL2, MEGF3	Cadherin EGF LAG seven-pass G-type receptor 3 (epidermal growth factor-like 2)	CELSR2	1952	ENSG00000143126			Celsr2 (MGI:1858235)
chr1	109279553	109283171	1p13.1	1p13.3	613126	PSRC1, DDA3	Proline/serine-rich coiled-coil protein 1	PSRC1	84722	ENSG00000134222			Psrc1 (MGI:1913099)
chr1	109309564	109397944	1p13.3	1p13.3	602458	SORT1, NT3, LDLCQ6	Sortilin	SORT1	6272	ENSG00000134243		[Low density lipoprotein cholesterol level QTL6], 613589 (3), Autosomal dominant	Sort1 (MGI:1338015)
chr1	109399030	109426485	1p13	1p13.3	176844	PSMA5, PSC5	Proteasome component 5	PSMA5	5686	ENSG00000143106			Psma5 (MGI:1347009)
chr1	109504174	109509750	1p13.3	1p13.3	615689	AMIGO1, ALI2, KIAA1163	Adhesion molecule with Ig-like domain 1	AMIGO1	57463	ENSG00000181754			Amigo1 (MGI:2653612)
chr1	109539871	109545832	1p13.3	1p13.3	606916	GPR61	G protein-coupled receptor 61	GPR61	83873	ENSG00000156097			Gpr61 (MGI:2441719)
chr1	109548563	109595842	1p13	1p13.3	139370	GNAI3, ARCND1	Guanine nucleotide-binding protein (G-protein), alpha-inhibiting activity polypeptide-3	GNAI3	2773	ENSG00000065135		Auriculocondylar syndrome 1, 602483 (3), Autosomal dominant	Gnai3 (MGI:95773)
chr1	109598892	109598966	1p13.3	1p13.3	611189	MIR197	Micro rNA 197	MIR197	406974				
chr1	109603090	109619732	1p13	1p13.3	139340	GNAT2, ACHM4	Guanine nucleotide-binding protein (G-protein), alpha-transducing (transducin) activity polypeptide-2	GNAT2	2780	ENSG00000134183		Achromatopsia 4, 613856 (3)	Gnat2 (MGI:95779)
chr1	109619812	109632054	1p13.3	1p13.3	102771	AMPD2, SPG63, PCH9	Adenosine monophosphate deaminase-2, isoform L	AMPD2	271	ENSG00000116337	mutation identified in 1 SPG63 family	Pontocerebellar hypoplasia, type 9, 615809 (3), Autosomal recessive; ?Spastic paraplegia 63, 615686 (3), Autosomal recessive	Ampd2 (MGI:88016)
chr1	109656075	109665500	1p13.3	1p13.3	138333	GSTM4	Glutathione S-transferase M4	GSTM4	2948	ENSG00000168765			Gstm4 (MGI:95862)
chr1	109668021	109683996	1p13.3	1p13.3	138380	GSTM2, GST4	Glutathione S-transferase M2, muscle	GSTM2	2946	ENSG00000213366			Gstm7 (MGI:1915562)
chr1	109687795	109693744	1p13.3	1p13.3	138350	GSTM1	Glutathione S-transferase M1	GSTM1	2944	ENSG00000134184			Gstm2 (MGI:95861)
chr1	109711750	109718267	1p13.3	1p13.3	138385	GSTM5	Glutathione S-transferase M5	GSTM5	2949	ENSG00000134201	pseudogene on chr.3		Gstm1 (MGI:95860)
chr1	109733931	109741037	1p13.3	1p13.3	138390	GSTM3, GST5	Glutathione S-transferase M3, brain	GSTM3	2947	ENSG00000134202			Gstm5 (MGI:1309466)
chr1	109750079	109764021	1p13.3	1p13.3	614989	EPS8L3, EPS8R3	EPS8-like protein 3	EPS8L3	79574	ENSG00000198758			Eps8l3 (MGI:2139743)
chr1	109910505	109930993	1p21-p13	1p13.3	120420	CSF1, MCSF	Colony-stimulating factor-1 (macrophage)	CSF1	1435	ENSG00000184371	incorrectly assigned to chr.5		Csf1 (MGI:1339753)
chr1	109984764	110023741	1p13.3	1p13.3	607826	AHCYL1, DCAL, IRBIT	Adenosylhomocysteine-like 1	AHCYL1	10768	ENSG00000168710			Ahcyl1 (MGI:2385184)
chr1	110031576	110054640	1p13.3	1p13.3	617918	STRIP1, FAR11A, FAM40A	Striatin-interacting protein 1	STRIP1	85369	ENSG00000143093			Strip1 (MGI:2443884)
chr1	110060374	110070699	1p21-p13	1p13.3	606014	ALX3, FND1	Aristaless-like homeobox 3	ALX3	257	ENSG00000156150		Frontonasal dysplasia 1, 136760 (3), Autosomal recessive	Alx3 (MGI:1277097)
chr1	110112439	110113946	1p13.3	1p13.3	611127	UBL4B	Ubiquitin-like 4B	UBL4B	164153	ENSG00000186150			Ubl4b (MGI:1914841)
chr1	110150513	110202201	1p13.3	1p13.3	610299	SLC6A17, NTT4, MRT48	Solute carrier family 6 (neurotransmitter transporter), member 17	SLC6A17	388662	ENSG00000197106		Mental retardation, autosomal recessive 48, 616269 (3), Autosomal recessive	Slc6a17 (MGI:2442535)
chr1	110210713	110282648	1p13.3	1p13.3	176265	KCNC4	Potassium voltage-gated channel, Shaw-related subfamily, member 4	KCNC4	3749	ENSG00000116396			Kcnc4 (MGI:96670)
chr1	110338928	110373004	1p13	1p13.3	606077	RBM15, SPEN, OTT	One-twenty two protein (RNA binding motif protein 15; Spen, Drosophila, homolog of)	RBM15	64783	ENSG00000162775		Megakaryoblastic leukemia, acute, 606077 (2)	Rbm15 (MGI:2443205)
chr1	110401252	110407923	1p13.2	1p13.3	608521	LAMTOR5, HBXIP, XIP	Late endosomal/lysosomal adaptor, mitogen-activated protein kinase and mammalian target of rapamycin activator 5	LAMTOR5	10542	ENSG00000134248			Lamtor5 (MGI:1915826)
chr1	110451165	110457353	1p21	1p13.3	606233	PROK1, PK1, PRK1, EGVEGF	Prokineticin 1	PROK1	84432	ENSG00000143125			Prok1 (MGI:2180370)
chr1	110517216	110519174	1p13.1	1p13.3	602420	KCNA10	Potassium voltage-gated channel, shaker-related subfamily, member 10	KCNA10	3744	ENSG00000143105			Kcna10 (MGI:3037820)
chr1	110593579	110631535	1p13.3	1p13.3	176262	KCNA2, EIEE32	Potassium channel, voltage-gated, Shaker-related subfamily, member 2	KCNA2	3737	ENSG00000177301		Epileptic encephalopathy, early infantile, 32, 616366 (3), Autosomal dominant	Kcna2 (MGI:96659)
chr1	110653559	110675032	1p21-p13.3	1p13.3	176263	KCNA3	Potassium voltage-gated channel, shaker-related subfamily, member 3	KCNA3	3738	ENSG00000177272	mapped probably in error to chr.13		Kcna3 (MGI:96660)
chr1	110871166	110899935	1p21-p13.3	1p13.3	151525	CD53, MOX44	CD53 antigen	CD53	963	ENSG00000143119			Cd53 (MGI:88341)
chr1	110877251	110963961	1p12	1p13.3	615354	LRIF1, RIF1	Ligand-dependent nuclear receptor-interacting factor 1	LRIF1	55791	ENSG00000121931			Lrif1 (MGI:2445214)
chr1	111117169	111140215	1p13.3	1p13.3	613360	DRAM2, TMEM77, CORD21	Damage-regulated autophagy modulator 2	DRAM2	128338	ENSG00000156171		Cone-rod dystrophy 21, 616502 (3), Autosomal recessive	Dram2 (MGI:1914421)
chr1	111139382	111185103	1p13.3	1p13.3	616751	CEPT1	Choline/ethanolamine phosphotransferase 1	CEPT1	10390	ENSG00000134255			Cept1 (MGI:2139793)
chr1	111185968	111204790	1p13.3	1p13.3-p13.2	615111	DENND2D	DENN/MADD domain-containing protein 2D	DENND2D	79961	ENSG00000162777			Dennd2d (MGI:2181193)
chr1	111200000	115500000	1p13.2		617386	NR1H5P, FXRB	Nuclear receptor subfamily 1, group H, member 5, pseudogene	NR1H5P	643609				
chr1	111227079	111243439	1p13.3	1p13.2	601526	CHI3L2, YKL39	Chitinase 3-like 2	CHI3L2	1117	ENSG00000064886			
chr1	111290851	111320565	1p21.3-p13.1	1p13.2	606080	CHIA, TSA1902, CHIT2	Chitinase, acidic	CHIA	27159	ENSG00000134216			Chia1 (MGI:1932052)
chr1	111324662	111353016	1p13.2	1p13.2	614234	C1orf88, PIFO	Chromosome 1 open reading frame 88 (pitchfork, mouse, homolog of)	PIFO	128344	ENSG00000173947			Pifo (MGI:1923670)
chr1	111414314	111427776	1p13.2	1p13.2	603578	OVGP1	Oviductal glycoprotein 1	OVGP1	5016	ENSG00000085465			Ovgp1 (MGI:106661)
chr1	111439889	111449307	1p13.2	1p13.2	611734	WDR77, MEP50	WD repeat-containing protein 77	WDR77	79084	ENSG00000116455			Wdr77 (MGI:1917715)
chr1	111449120	111461917	1p13.2	1p13.2	603270	ATP5F1	ATP synthase, H+ transporting, mitochondrial FO complex, subunit B, isoform 1	ATP5PB	515	ENSG00000116459			Atp5f1 (MGI:1100495)
chr1	111499428	111504120	1p21-p13	1p13.2	600445	ADORA3	Adenosine A3 receptor	ADORA3	140	ENSG00000282608			Adora3 (MGI:104847)
chr1	111542222	111716694	1p13.3	1p13.2	179520	RAP1A, KREV1	RAS-related protein RAP1A	RAP1A	5906	ENSG00000116473	pseudogene on 14q24.3		Rap1a (MGI:97852)
chr1	111755567	111767576	1p21.1-p13.2	1p13.2	606168	DDX20	DEAD/H box 20	DDX20	11218	ENSG00000064703			Ddx20 (MGI:1858415)
chr1	111770661	111989576	1p13.3-p13.2	1p13.2	605411	KCND3, KCND3S, KCND3L, SCA19, SCA22, BRGDA9	Potassium voltage-gated channel, Shal-related subfamily, member 3	KCND3	3752	ENSG00000171385		Brugada syndrome 9, 616399 (3), Autosomal dominant; Spinocerebellar ataxia 19, 607346 (3), Autosomal dominant	Kcnd3 (MGI:1928743)
chr1	112391084	112461163	1p13.2	1p13.2	615100	CTTNBP2NL	CTTNBP2 N terminus-like protein	CTTNBP2NL	55917	ENSG00000143079			Cttnbp2nl (MGI:1933137)
chr1	112466540	112521287	1p13	1p13.2	601968	WNT13, XWNT2	Wingless-type MMTV integration site family, member 13	WNT2B	7482	ENSG00000134245			Wnt2b (MGI:1261834)
chr1	112517443	112619880	1p13	1p13.2	617640	ST7L, ST7R	Suppressor of tumorigenicity 7-like protein	ST7L	54879	ENSG00000007341			St7l (MGI:2386964)
chr1	112619452	112671618	1p13.2	1p13.2	601580	CAPZA1, CAPPA1	Capping protein, muscle Z-line, alpha-1	CAPZA1	829	ENSG00000116489			Capza1 (MGI:106227)
chr1	112674311	112702376	1p13.2	1p13.2	610742	MOV10, KIAA1631	Moloney leukemia virus 10, mouse, homolog of	MOV10	4343	ENSG00000155363			Mov10 (MGI:97054)
chr1	112701126	112707402	1p13.2	1p13.2	165380	RHOC, ARHC, ARH9, RHOH9	RAS homolog gene family, member C (oncogene RHO H9)	RHOC	389	ENSG00000155366	incorrectly assigned to chr.5		Rhoc (MGI:106028)
chr1	112709993	112715327	1p13.2	1p13.2	609957	PPM1J, PP2CZ, PPP2CZ	Protein phosphatase, magnesium-dependent, 1J	PPM1J	333926	ENSG00000155367			Ppm1j (MGI:1919137)
chr1	112718960	112727234	1p13.2	1p13.2	617497	FAM19A3, TAFA3	Family with sequence similarity 19, member A3, CC motif chemokine-like	FAM19A3	284467	ENSG00000184599			Fam19a3 (MGI:3046463)
chr1	112911846	112956352	1p13.2-p12	1p13.2	600682	SLC16A1, MCT1, HHF7, MCT1D	Solute carrier family 16 (monocarboxylic acid transporters), member 1	SLC16A1	6566	ENSG00000155380		Erythrocyte lactate transporter defect, 245340 (3), Autosomal dominant; Hyperinsulinemic hypoglycemia, familial, 7, 610021 (3), Autosomal dominant; Monocarboxylate transporter 1 deficiency, 616095 (3), Autosomal recessive, Autosomal dominant	Slc16a1 (MGI:106013)
chr1	113073169	113132259	1p13	1p13.2	608869	LRIG2, LIG2, KIAA0806, UFS2	Leucine-rich repeats- and immunoglobulin-like domains-containing protein 2	LRIG2	9860	ENSG00000198799		Urofacial syndrome 2, 615112 (3), Autosomal recessive	Lrig2 (MGI:2443718)
chr1	113390473	113685922	1p21	1p13.2	615943	MAGI3, KIAA1634	Membrane-associated guanylate kinase, WW and PDZ domains-containing, 3	MAGI3	260425	ENSG00000081026			Magi3 (MGI:1923484)
chr1	113697201	113759887	1p13	1p13.2	604950	PHTF1	Putative homeodomain transcription factor 1	PHTF1	10745	ENSG00000116793			Phtf1 (MGI:1332671)
chr1	113761831	113812536	1p13.2	1p13.2	615858	RSBN1, ROSBIN	Round spermatid basic protein 1	RSBN1	54665	ENSG00000081019			Rsbn1 (MGI:2444993)
chr1	113813810	113871760	1p13	1p13.2	600716	PTPN22, PEP, PTPN8, LYP	Protein tyrosine phosphatase, nonreceptor-type 22	PTPN22	26191	ENSG00000134242		{Diabetes, type 1, susceptibility to}, 222100 (3), Autosomal recessive; {Rheumatoid arthritis, susceptibility to}, 180300 (3); {Systemic lupus erythematosus susceptibility to}, 152700 (3), Autosomal dominant	Ptpn22 (MGI:107170)
chr1	113894193	113905123	1p13.2	1p13.2	607245	AP4B1, SPG47, CPSQ5	Adaptor-related protein complex 4, beta-1 subunit	AP4B1	10717	ENSG00000134262		Spastic paraplegia 47, autosomal recessive, 614066 (3), Autosomal recessive	Ap4b1 (MGI:1337130)
chr1	113904618	113914085	1p13.3-p13.1	1p13.2	609683	DCLRE1B, SNM1B, APOLLO	DNA cross-link repair protein 1B	DCLRE1B	64858	ENSG00000118655			Dclre1b (MGI:2156057)
chr1	113979390	113982253	1p13.1	1p13.2	610088	OLFML3, OLF44	Olfactomedin-like 3	OLFML3	56944	ENSG00000116774			Olfml3 (MGI:1914877)
chr1	114089291	114153918	1p13.2	1p13.2	607718	SYT6	Synaptotagmin 6	SYT6	148281	ENSG00000134207			Syt6 (MGI:1859544)
chr1	114392776	114511191	1p13	1p13.2	605769	TRIM33, TIF1G, RFG7, PTC7	Tripartite motif-containing protein 33	TRIM33	51592	ENSG00000197323	fused with RET to form PTC7		Trim33 (MGI:2137357)
chr1	114567556	114581643	1p21-p13.3	1p13.2	605783	BCAS2, DAM1	Breast carcinoma amplified sequence 2	BCAS2	10286	ENSG00000116752			Bcas2 (MGI:1915433)
chr1	114673097	114695617	1p21-p13	1p13.2	102770	AMPD1, MMDD	Adenosine monophosphate deaminase-1, muscle	AMPD1	270	ENSG00000116748		Myopathy due to myoadenylate deaminase deficiency, 615511 (3), Autosomal recessive	Ampd1 (MGI:88015)
chr1	114704463	114716893	1p13.2	1p13.2	164790	NRAS, ALPS4, NS6, CMNS, NCMS	Neuroblastoma RAS viral (v-ras) oncogene homolog	NRAS	4893	ENSG00000213281	cen-CD2-NGFB-NRAS	Colorectal cancer, somatic, 114500 (3); Epidermal nevus, somatic, 162900 (3); Melanocytic nevus syndrome, congenital, somatic, 137550 (3); Neurocutaneous melanosis, somatic, 249400 (3); Noonan syndrome 6, 613224 (3), Autosomal dominant; ?RAS-associated autoimmune lymphoproliferative syndrome type IV, somatic, 614470 (3); Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic, 163200 (3); Thyroid carcinoma, follicular, somatic, 188470 (3)	Nras (MGI:97376)
chr1	114716912	114758049	1p22	1p13.2	191510	CSDE1, D1S155E, UNR	Cold-shock domain-containing E1, RNA-binding	CSDE1	7812	ENSG00000009307	130bp 5' to NRAS		Csde1 (MGI:92356)
chr1	114769478	114780686	1p13.2	1p13.2	611656	SIKE	Suppressor of IKK-epsilon	SIKE1	80143	ENSG00000052723			Sike1 (MGI:1913891)
chr1	114854267	114995369	1p13	1p13.2	602162	SYCP1, SCP1	Synaptonemal complex protein-1	SYCP1	6847	ENSG00000198765			Sycp1 (MGI:105931)
chr1	115029823	115035934	1p13	1p13.2	188540	TSHB, CHNG4	Thyroid-stimulating hormone, beta polypeptide	TSHB	7252	ENSG00000134200	centromeric to NGFB	Hypothyroidism, congenital, nongoitrous 4, 275100 (3), Autosomal recessive	Tshb (MGI:98848)
chr1	115048010	115089500	1p13.2	1p13.2	613133	TSPAN2, NET3	Tetraspanin 2	TSPAN2	10100	ENSG00000134198			Tspan2 (MGI:1917997)
chr1	115285914	115338252	1p13.1	1p13.2	162030	NGF, NGFB, HSAN5	Nerve growth factor, beta	NGF	4803	ENSG00000134259	same 310kb fragment as TSHB; order: cen-CD2-CD58-ATP1A1-NGF-TSHB-NRAS-tel	Neuropathy, hereditary sensory and autonomic, type V, 608654 (3), Autosomal recessive	Ngf (MGI:97321)
chr1	115641952	115698223	1p13	1p13.1	610132	VANGL1, STBM2	Vang-like 1	VANGL1	81839	ENSG00000173218		Caudal regression syndrome, 600145 (3), Autosomal dominant; {Neural tube defects, susceptibility to}, 182940 (3), Autosomal dominant	Vangl1 (MGI:2159344)
chr1	115700002	115768804	1p13.3-p11	1p13.1	114251	CASQ2	Calsequestrin, fast-twitch, skeletal muscle-2	CASQ2	845	ENSG00000118729		Ventricular tachycardia, catecholaminergic polymorphic, 2, 611938 (3), Autosomal recessive	Casq2 (MGI:1309469)
chr1	115830776	115841125	1p12-p11	1p13.1	162361	NHLH2, HEN2	Nescient helix loop helix 2	NHLH2	4808	ENSG00000177551			Nhlh2 (MGI:97324)
chr1	115976497	116070053	1p13.1	1p13.1	608275	SLC22A15, FLIPT1	Solute carrier family 22 (organic cation transporter), member 15	SLC22A15	55356	ENSG00000163393			Slc22a15 (MGI:3607704)
chr1	116372985	116410258	1p13-p11	1p13.1	182310	ATP1A1	ATPase, Na+K+ transporting, alpha-1 polypeptide	ATP1A1	476	ENSG00000163399			Atp1a1 (MGI:88105)
chr1	116500389	116571092	1p13	1p13.1	153420	CD58, LFA3	CD58 antigen (lymphocyte function-associated antigen 3)	CD58	965	ENSG00000116815	?same as MSK1; gene cloned		
chr1	116574397	116667754	1p13	1p13.1	603491	IGSF3, LCDD	Immunoglobulin superfamily, member 3	IGSF3	3321	ENSG00000143061	mutation identified in 1 LCDD family	?Lacrimal duct defect, 149700 (3), Autosomal recessive	Igsf3 (MGI:1926158)
chr1	116754429	116769228	1p13.1	1p13.1	186990	CD2	CD2 antigen (p50), sheep red blood cell receptor	CD2	914	ENSG00000116824			Cd2 (MGI:88320)
chr1	116909922	116990357	1p13.1-q21.3	1p13.1	601204	PTGFRN, FPRP	Prostaglandin F2 receptor negative regulator	PTGFRN	5738	ENSG00000134247			Ptgfrn (MGI:1277114)
chr1	117060302	117107452	1p13.1	1p13.1	604718	TTF2	Transcription termination factor, RNA polymerase II	TTF2	8458	ENSG00000116830			Ttf2 (MGI:1921294)
chr1	117107710	117121788	1p22	1p13.1	609318	TRIM45	Tripartite motif-containing protein 45	TRIM45	80263	ENSG00000134253			Trim45 (MGI:1918187)
chr1	117143586	117210984	1p13.1	1p13-p12	608162	VCTN1, B7H4, B7X, B7S1	V-set domain containing T cell activation inhibitor 1	VTCN1	79679	ENSG00000134258			Vtcn1 (MGI:3039619)
chr1	117367392	117528871	1p13	1p12	604345	MAN1A2	Mannosidase, alpha, class 1A, member 2	MAN1A2	10905	ENSG00000198162			Man1a2 (MGI:104676)
chr1	117605981	117628388	1p12	1p12	613952	FAM46C	Family with sequence similarity 46, member C	FAM46C	54855	ENSG00000183508			Fam46c (MGI:1921895)
chr1	117929748	117960425	1p13-p12	1p12	604737	WDR3	WD repeat-containing protein 3	WDR3	10885	ENSG00000065183			Wdr3 (MGI:2443143)
chr1	117953594	118185268	1p12	1p12	616554	SPAG17, PF6	Sperm-associated antigen 17	SPAG17	200162	ENSG00000155761			Spag17 (MGI:1921612)
chr1	118883042	118989555	1p13	1p12	604127	TBX15	T-box 15	TBX15	6913	ENSG00000092607		Cousin syndrome, 260660 (3), Autosomal recessive	Tbx15 (MGI:1277234)
chr1	119031215	119140787	1p13.3-p13.1	1p12	604733	WARS2, NEMMLAS	Tryptophanyl-tRNA synthetase 2	WARS2	10352	ENSG00000116874		Neurodevelopmental disorder, mitochondrial, with abnormal movements and lactic acidosis, with or without seizures, 617710 (3), Autosomal recessive	Wars2 (MGI:1917810)
chr1	119361912	119394129	1p13	1p12	605176	HAO2, HAOX2	Hydroxyacid oxidase 2	HAO2	51179	ENSG00000116882			Hao2 (MGI:96012)
chr1	119414930	119423038	1p13.1	1p12	613890	HSD3B2	Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase, type 2 (adrenal, gonadal)	HSD3B2	3284	ENSG00000203859		Adrenal hyperplasia, congenital, due to 3-beta-hydroxysteroid dehydrogenase 2 deficiency, 201810 (3), Autosomal recessive	Hsd3b1 (MGI:96233)
chr1	119507202	119515057	1p13.1	1p12	109715	HSD3B1	Hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase, type 1 (placental, peripheral)	HSD3B1	3283	ENSG00000203857			Hsd3b6,Hsd3b3,Hsd3b2 (MGI:109598,MGI:96235,MGI:96234)
chr1	119711795	119744225	1p12	1p12	606879	PHGDH, NLS1, PHGDHD	Phosphoglycerate dehydrogenase	PHGDH	26227	ENSG00000092621		Neu-Laxova syndrome 1, 256520 (3), Autosomal recessive; Phosphoglycerate dehydrogenase deficiency, 601815 (3), Autosomal recessive	Phgdh (MGI:1355330)
chr1	119747995	119768931	1p13-p12	1p12	600234	HMGCS2	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2, mitochondrial	HMGCS2	3158	ENSG00000134240		HMG-CoA synthase-2 deficiency, 605911 (3), Autosomal recessive	Hmgcs2 (MGI:101939)
chr1	119794017	119811579	1p13.1-p12	1p12	609846	REG4	Regenerating islet-derived family, member 4	REG4	83998	ENSG00000134193			Reg4 (MGI:1914959)
chr1	119833729	119844879	1p12	1p12	613997	NBPF7	Neuroblastoma breakpoint family, member 7	NBPF7	343505				
chr1	119893532	119896523	1p13-p11	1p12	604779	ADAM30	A disintegrin and metalloproteinase domain 30	ADAM30	11085	ENSG00000134249			Adam30 (MGI:1918328)
chr1	119911552	120069702	1p13-p11	1p12	600275	NOTCH2, AGS2, HJCYS	Notch, Drosophila, homolog  of, 2	NOTCH2	4853	ENSG00000134250		Alagille syndrome 2, 610205 (3), Autosomal dominant; Hajdu-Cheney syndrome, 102500 (3), Autosomal dominant	Notch2 (MGI:97364)
chr1	120155941	120176520	1q21.2-q21.3	1p12	604029	SEC22L1, SEC22B	Secretion deficient 22, S. Cerevisiae, homolog-like 1	SEC22B	9554	ENSG00000265808			Sec22b (MGI:1338759)
chr1	120400000	123400000	1p11		606190	MNRI	Meningioma, radiation-induced		117192			Meningioma, radiation-induced, 606190 (2)	
chr1	120415026	120469669	1q21.1	1p11.2	613998	NBPF8	Neuroblastoma breakpoint family, member 8	NBPF8	728841				
chr1	120432203	120434108	1q21.1	1p11.2	608609	C1orf152, COAS3	Chromosome 1 open reading frame 152	PFN1P2	767846				
chr1	121087344	121097160	1p12	1p11.2	601502	FCGR1B	Fc fragment of IgG, high affinity Ib, receptor for (CD64)	FCGR1B	2210	ENSG00000198019			
chr1	121167645	121186895	1p11	1p11.2	614711	FAM72B	Family with sequence similarity 72, member B	FAM72B	653820	ENSG00000188610			
chr1	121184966	121392873	1p12	1p11.2	614704	SRGAP2C	SLIT-ROBO Rho GTPase-activating protein 2C	SRGAP2C	653464	ENSG00000171943			
chr1	123400000	248956422	1q		151628	LRE2	LINE retrotransposable element-2				inserted in DMD gene		
chr1	125100000	173000000	1q12-q24		605549	CORD8	Cone-rod dystrophy 8	CORD8	54109			Cone-rod dystrophy 8, 605549 (2), Autosomal recessive	
chr1	125100000	155100000	1q12-q21.3		612875	GNRHR2	Gonadotropin-releasing hormone receptor 2	GNRHR2	114814		?processed pseudogene		
chr1	125100000	156600000	1q12-q22		189890	TRNL	tRNA asparagine-like						
chr1	143200000	155100000	1q21		611152	AD13	Alzheimer disease-13		100188837		max lod D1S498	{Alzheimer disease-13}, 611152 (2)	
chr1	143200000	156600000	1q21-q22		608781	ASPG3	Asperger syndrome, susceptibility to, 3		449015		max lod at D1S484	{Asperger syndrome susceptibility 3}, 608781 (2)	
chr1	143200000	165500000	1q21-q23		605833	BMND2	Bone mineral density QTL 2		338027			[Bone mineral density QTL 2], 605833 (2)	
chr1	143200000	147500000	1q21.1		612474	DEL1q21, C1DELq21	Chromosome 1q21.1 deletion syndrome				contiguous gene deletion syndrome	Chromosome 1q21.1 deletion syndrome, 612474 (4), Autosomal dominant, Isolated cases	
chr1	143200000	165500000	1q21-q23		608372	DFNA49	Deafness, autosomal dominant 49	DFNA49	317664		max lod at D1S3784 and D1S3786	Deafness, autosomal dominant 49, 608372 (2), Autosomal dominant	
chr1	143200000	165500000	1q21-q23		601412	DFNA7	Deafness, autosomal dominant 7	DFNA7	1689			Deafness, autosomal dominant 7, 601412 (2), Autosomal dominant	
chr1	143200000	147500000	1q21.1		612475	DUP1q21, C1DUPq21	Chromosome 1q21.1 duplication syndrome				contiguous gene duplication syndrome	Chromosome 1q21.1 duplication syndrome, 612475 (4), Autosomal dominant, Isolated cases	
chr1	143200000	165500000	1q21-q23		614013	ERVK-7, HERV-KIII, HERV-K102	Endogenous retrovirus group K, member 7	ERVK-7	449619				
chr1	143200000	147500000	1q21.1		613017	NBLST6	Neuroblastoma, susceptibility to, 6		100306939		?contiguous gene deletion or duplication disease	{Neuroblastoma, susceptibility to, 6}, 613017 (2)	
chr1	143200000	147500000	1q21.1		612970	NBPF17P, NBPF23	Neuroblastoma breakpoint family, member 17, pseudogene	NBPF17P	401967				
chr1	143200000	155100000	1q21		603935	PSORS4	Psoriasis susceptibility 4	PSORS4	10547			{Psoriasis susceptibility 4}, 603935 (2)	
chr1	143200000	155100000	1q21		605642	PTCPRN, PRN1	Papillary thyroid carcinoma with papillary renal neoplasia		79052			Thyroid carcinoma, papillary, with papillary renal neoplasia, 605642 (2)	
chr1	143200000	155100000	1q21		161900	RFH1, AORF	Renal failure, progressive, with hypertension		59331			Nephropathy-hypertension, 161900 (2), Autosomal dominant	
chr1	143200000	165500000	1q21-q23		613145	SLEB14	Systemic lupus erythematosus, susceptibility to, 14		100322878		associated with rs3093061	{Systemic lupus erythematosus, susceptibility to, 14}, 613145 (2)	
chr1	143200000	156600000	1q21-q22		182269	SPRR2C	Small proline-rich protein 2C	SPRR2C	6702		prob. pseudogene		
chr1	143200000	147500000	1q21.1		614747	UAQTL6	Uric acid concentration, serum, quantitative trait locus 6		100996935		associated with C/T variant at chr1_142697422	[Uric acid concentration, serum, QTL6], 614747 (2)	
chr1	143874742	143883732	1q21	1q21.1	601503	FCGR1C	Fc fragment of IgG, high affinity Ic, receptor for (CD64)	FCGR1CP	100132417				
chr1	143955363	143973518	1q21.2	1q21.1	616853	FAM72C	Family with sequence similarity 72, member C	FAM72C	554282	ENSG00000263513			
chr1	143972638	144069703	1q21.1	1q21.1	614705	SRGAP2D	SLIT-ROBO Rho GTPase-activating protein 2D	SRGAP2D	100996712				
chr1	144372874	144373658	1q21.1	1q21.1	608608	PPIAL4A, COAS2	Peptidylprolyl isomerase A (cyclophilin A)-like 4A	PPIAL4E	730262	ENSG00000271567			
chr1	144421385	144459463	1q21.1	1q21.1	610414	NBPF15, MGC8902	Neuroblastoma breakpoint family, member 15	NBPF15	284565	ENSG00000266338	contains 6 copies of DUF1220 domain		
chr1	144421385	144459463	1q21.1	1q21.1	614005	NBPF16	Neuroblastoma breakpoint family, member 16	NBPF15	284565	ENSG00000266338			
chr1	144887190	145095320	1q21.1	1q21.1	614703	SRGAP2B	SLIT-ROBO Rho GTPase-activating protein 2B	SRGAP2B	647135	ENSG00000196369			
chr1	145093804	145112691	1p21	1q21.1	614712	FAM72D	Family with sequence similarity 72, member D	FAM72D	728833	ENSG00000215784			
chr1	145287765	145287838	1p36.1	1q21.1	189880	TRNAN1, TRN1, TRN	tRNA asparagine	TRN-GTT2-1	7214				
chr1	145289899	145405777	1q21.1	1q21.1	614007	NBPF20	Neuroblastoma breakpoint family, member 20	NBPF20	100288142	ENSG00000162825			
chr1	145607959	145670976	1q21.1	1q21.1	612821	GPR89A	G protein-coupled receptor 89A	GPR89A	653519	ENSG00000117262			Gpr89 (MGI:1914799)
chr1	145670851	145708200	1q21	1q21.1	603831	PDZK1	PDZ domain-containing 1	PDZK1	5174	ENSG00000174827			Pdzk1 (MGI:1928901)
chr1	145719311	145739287	1q21.1	1q21.1	604463	CD160, BY55	CD160 antigen	CD160	11126	ENSG00000117281			Cd160 (MGI:1860383)
chr1	145823182	145844401	1q21.1	1q21.1	617454	POLR3C, RPC62, RPC3	Polymerase III, RNA, subunit C	POLR3C	10623	ENSG00000186141			Polr3c (MGI:1921664)
chr1	145848521	145859080	1q21	1q21.1	605987	PIAS3	Protein inhibitor of activated STAT3	PIAS3	10401	ENSG00000131788			Pias3 (MGI:1913126)
chr1	145891207	145910188	1q21.1	1q21.1	604042	ITGA10	Integrin, alpha-10	ITGA10	8515	ENSG00000143127			Itga10 (MGI:2153482)
chr1	145911347	145918923	1q21.1	1q21.1	603867	PEX11B, PEX14B	Peroxisome biogenesis 11B	PEX11B	8799	ENSG00000131779	mutation identified in 1 PEX14B patient	?Peroxisome biogenesis disorder 14B, 614920 (3), Autosomal recessive	Pex11b (MGI:1338882)
chr1	145921555	145927535	1q12	1q21.1	605313	RBM8A, RBM8B, TAR, C1DELq21.1, DEL1q21.1	RNA-binding motif protein 8A	RBM8A	9939	ENSG00000265241	pseudogene on chr.14	Thrombocytopenia-absent radius syndrome, 274000 (3), Autosomal recessive	Rbm8a (MGI:1913129)
chr1	145959036	145978847	1q21.1	1q21.1	617457	POLR3GL	Polymerase III, RNA, subunit G-like	POLR3GL	84265	ENSG00000121851			Polr3gl (MGI:1917120)
chr1	145992425	145996630	1q21	1q21.1	606599	TXNIP, VDUP1	Thioredoxin-interacting protein	TXNIP	10628	ENSG00000265972			Txnip (MGI:1889549)
chr1	146017467	146021821	1q21	1q21.1	608374	HJV, HFE2A	Hemojuvelin	HJV	148738	ENSG00000168509	between D1S442 and D1S2347	Hemochromatosis, type 2A, 602390 (3), Autosomal recessive	Hfe2 (MGI:1916835)
chr1	146066317	146144803	1q21.1	1q21.1	614000	NBPF10	Neuroblastoma breakpoint family, member 10	NBPF10	100132406	ENSG00000271425			
chr1	146486331	146822033	1q21.1	1q21.1	610813	HYDIN2, KIAA1864	Hydin, mouse, homolog of, 2	HYDIN2	100288805		duplicated copy 16q22.2		
chr1	146938544	146996092	1q21.1	1q21.1	608607	NBPF12, COAS1, KIAA1245	Neuroblastoma breakpoint family, member 12	NBPF12	149013	ENSG00000268043			
chr1	147155105	147173365	1q21.1	1q21.1	602741	PRKAB2	Protein kinase, AMP-activated, noncatalytic, beta-2	PRKAB2	5565	ENSG00000131791			Prkab2 (MGI:1336185)
chr1	147173193	147295765	1q21	1q21.1	613039	CHD1L, ALC1	Chromodomain helicase DNA-binding protein 1-like	CHD1L	9557	ENSG00000131778			Chd1l (MGI:1915308)
chr1	147183962	147225797	1q21.1	1q21.1	603957	FMO5	Flavin-containing monooxygenase 5	FMO5	2330	ENSG00000131781			Fmo5 (MGI:1310004)
chr1	147541500	147626218	1q21	1q21.2	602597	BCL9	B-cell CLL/lymphoma-9	BCL9	607	ENSG00000116128			Bcl9 (MGI:1924828)
chr1	147626181	147670542	1q21	1q21.2	611471	ACP6, LPAP, ACPL1	Acid phosphatase 6, lysophosphatide	ACP6	51205	ENSG00000162836			Acp6 (MGI:1931010)
chr1	147756198	147781126	1q21.2	1q21.2	121013	GJA5, CX40, ATFB11	Gap junction protein, alpha-5, 40kD (connexin 40)	GJA5	2702	ENSG00000265107		Atrial fibrillation, familial, 11, 614049 (3), Autosomal dominant; Atrial standstill, digenic (GJA5/SCN5A), 108770 (3), Autosomal dominant	Gja5 (MGI:95716)
chr1	147902819	147915286	1q21.1	1q21.2	600897	GJA8, CX50, CTRCT1, CZP1, CAE1	Gap junction membrane channel protein alpha-8 (connexin 50)	GJA8	2703	ENSG00000121634		Cataract 1, multiple types, 116200 (3), Autosomal dominant	Gja8 (MGI:99953)
chr1	147928373	147993591	1q21.1	1q21.2	612806	GPR89B, GPHR	G protein-coupled receptor 89B	GPR89B	51463	ENSG00000117262			Gpr89 (MGI:1914799)
chr1	148102045	148152189	1q21.1	1q21.2	614001	NBPF11	Neuroblastoma breakpoint family, member 11	NBPF11	200030	ENSG00000263956			
chr1	148531384	148595716	1q21.1	1q21.2	614003	NBPF14	Neuroblastoma breakpoint, member 14	NBPF14	25832	ENSG00000270629			
chr1	148808180	149051276	1q21.1	1q21.2	608117	PDE4DIP, MMGL, KIAA0454, KIAA0477	Phosphodiesterase 4D-interacting protein	PDE4DIP	9659	ENSG00000178104			Pde4dip (MGI:1891434)
chr1	149054032	149082310	1q21.1	1q21.2	613999	NBPF9	Neuroblastoma breakpoint family, member 9	NBPF9	400818	ENSG00000269713			
chr1	149475897	149556360	1q21.1	1q21.2	614006	NBPF19	Neuroblastoma breakpoint family, member 19	NBPF19	101060226	ENSG00000271383			
chr1	149782070	149792517	1q21.2-q21.3	1q21.2	146760	FCGR1A, IGFR1, CD64	Fc fragment of IgG, high affinity Ia, receptor for (CD64)	FCGR1A	2209	ENSG00000150337		[IgG receptor I, phagocytic, familial deficiency of] (3)	Fcgr1 (MGI:95498)
chr1	149832656	149833051	1q21	1q21.2	142750	H4FN, H4F2	H4 histone, family 2	HIST2H4A	8370	ENSG00000270882	100-200 histone genes; some on chromosome 6 and 12, as well as perhaps 7		Hist1h4b (MGI:2448420)
chr1	149840686	149841192	1q21	1q21.2	142780	HIST2H3C, H3F2	Histone 2, H3c	HIST2H3C	126961	ENSG00000203811			H3f3c (MGI:3650546)
chr1	149842217	149842750	1q21	1q21.2	142720	HIST2H2AA, H2AFO, H2A	Histone 2, H2aa	HIST2H2AA3	8337	ENSG00000203812			Hist2h2aa1,Hist2h2aa2 (MGI:96097,MGI:2448283)
chr1	149884459	149886681	1q21-q23	1q21.2	601831	HIST2H2BE, H2B	Histone 2, H2be	HIST2H2BE	8349	ENSG00000184678			
chr1	149886974	149887410	1q21-q23	1q21.2	602797	HIST2H2AC, H2AFQ	Histone 2, H2ac	HIST2H2AC	8338	ENSG00000184260			Hist2h2ac (MGI:2448316)
chr1	149887468	149887915	1q21	1q21.2	615014	HIST2H2AB, H2AB	Histone gene cluster 2, H2A histone family, member B	HIST2H2AB	317772	ENSG00000184270			Hist2h2ab (MGI:2448314)
chr1	149899581	149900794	1q21.2	1q21.2	613181	BOLA1	BolA, E. coli, homolog of, 1	BOLA1	51027	ENSG00000178096			Bola1 (MGI:1916418)
chr1	149903317	149917881	1q21.2	1q21.2	185860	SV2A, SV2	Synaptic vesicle glycoprotein 2A	SV2A	9900	ENSG00000159164			Sv2a (MGI:1927139)
chr1	149923316	149928251	1q21.2	1q21.2	605593	SF3B4, SF3B49, SAP49, AFD1	Splicing factor 3B, subunit 4	SF3B4	10262	ENSG00000143368		Acrofacial dysostosis 1, Nager type, 154400 (3), Autosomal dominant	Sf3b4 (MGI:109580)
chr1	149940329	150010775	1q21.2	1q21.2	611748	OTUD7B, CEZANNE	OTU domain-containing protein 7B	OTUD7B	56957	ENSG00000264522			Otud7b (MGI:2654703)
chr1	150067278	150145326	1q21-q22	1q21.2	610035	VPS45A, VPS45, SCN5	Vacuolar protein sorting 45, yeast, homolog of, A	VPS45	11311	ENSG00000136631		Neutropenia, severe congenital, 5, autosomal recessive, 615285 (3), Autosomal recessive	Vps45 (MGI:891965)
chr1	150149433	150160064	1q21.2	1q21.2	608335	PLEKHO1, CKIP1	Pleckstrin homology domain-containing protein, family O, member 1	PLEKHO1	51177	ENSG00000023902			Plekho1 (MGI:1914470)
chr1	150218416	150236155	1q22	1q21.2	609611	ANP32E, LANPL	Acidic leucine-rich nuclear phosphoprotein 32 family, member E	ANP32E	81611	ENSG00000143401			
chr1	150257257	150265861	1q21	1q21.2	604832	CA14	Carbonic anhydrase XIV	CA14	23632	ENSG00000118298			Car14 (MGI:1344341)
chr1	150265398	150282178	1p36.13-q31.3	1q21.2	607629	APH1A	Anterior pharynx defective 1, C. elegans, homolog of, A	APH1A	51107	ENSG00000117362			Aph1a (MGI:2385110)
chr1	150282532	150287092	1q21.2	1q21.2	615782	CIART, CHRONO, GM129	Circadian-associated repressor of transcription	CIART	148523	ENSG00000159208			Ciart (MGI:2684975)
chr1	150293841	150308978	1q21	1q21.2	611984	MRPS21	Mitochondrial ribosomal protein S21	MRPS21	54460	ENSG00000266472	9 pseudogenes		Mrps21 (MGI:1913542)
chr1	150321467	150353227	1q21.2	1q21.2	607301	PRPF3, HPRP3, RP18	Precursor mRNA-processing factor 3, S. cerevisiae, homolog of	PRPF3	9129	ENSG00000117360		Retinitis pigmentosa 18, 601414 (3), Autosomal dominant	Prpf3 (MGI:1918017)
chr1	150364110	150476565	1q21.3	1q21.2	614695	RPRD2	Regulation of nuclear pre-mRNA domain-containing 2	RPRD2	23248	ENSG00000163125			Rprd2 (MGI:1922387)
chr1	150487363	150507608	1q21.2	1q21.2	612805	TARS2, COXPD21	Threonyl-tRNA synthetase 2	TARS2	80222	ENSG00000143374	mutation identified in one COXPD21 family	?Combined oxidative phosphorylation deficiency 21, 615918 (3), Autosomal recessive	Tars2 (MGI:1919057)
chr1	150508010	150513788	1q21	1q21.2	602201	ECM1, URBWD	Extracellular matrix protein-1	ECM1	1893	ENSG00000143369		Urbach-Wiethe disease, 247100 (3), Autosomal recessive	Ecm1 (MGI:103060)
chr1	150515756	150518031	1q21.2	1q21.2	616092	FALEC, FAL1	Focally amplified long noncoding RNA in epithelial cancer	FALEC	100874054				
chr1	150549368	150560936	1q21	1q21.2	610113	ADAMTSL4, TSRC1, ECTOL2	ADAMTS-like 4	ADAMTSL4	54507	ENSG00000143382		Ectopia lentis et pupillae, 225200 (3), Autosomal recessive; Ectopia lentis, isolated, autosomal recessive, 225100 (3), Autosomal recessive	Adamtsl4 (MGI:2389008)
chr1	150574550	150579737	1q21	1q21.2	159552	MCL1	Myeloid cell leukemia sequence 1 (BCL2-related)	MCL1	4170	ENSG00000143384			Mcl1 (MGI:101769)
chr1	150600000	155100000	1q21.3		139450	HRM2	Hair morphology 2 (curly hair)		100379199		associated with rs11803731	Hair, curly, 139450 (2), Autosomal dominant	
chr1	150622122	150629621	1q21.2	1q21.3	603061	ENSA	Endosulfine, alpha	ENSA	2029	ENSG00000143420			Ensa (MGI:1891189)
chr1	150646224	150697195	1q21.2	1q21.3	612208	GOLPH3L, GPP34R	Golgi phosphoprotein 3-like	GOLPH3L	55204	ENSG00000143457			Golph3l (MGI:1917129)
chr1	150698058	150720909	1q21.3	1q21.3	609824	HORMAD1, NOHMA	HORMA domain-containing 1	HORMAD1	84072	ENSG00000143452			Hormad1 (MGI:1915231)
chr1	150730195	150765956	1q21	1q21.3	116845	CTSS	Cathepsin S	CTSS	1520	ENSG00000163131			Ctss (MGI:107341)
chr1	150796207	150808440	1q21	1q21.3	601105	CTSK	Cathepsin K	CTSK	1513	ENSG00000143387		Pycnodysostosis, 265800 (3), Autosomal recessive	Ctsk (MGI:107823)
chr1	150809704	150876767	1q21	1q21.3	126110	ARNT	Aryl hydrocarbon receptor nuclear translocator	ARNT	405	ENSG00000143437			Arnt (MGI:88071)
chr1	150926245	150964743	1q21	1q21.3	604396	SETDB1	SET domain protein, bifurcated, 1	SETDB1	9869	ENSG00000143379			Setdb1 (MGI:1934229)
chr1	150965172	150975002	1q21.3	1q21.3	606920	CERS2, LASS2	Ceramide synthase 2	CERS2	29956	ENSG00000143418			Cers2 (MGI:1924143)
chr1	150982022	150996062	1q21	1q21.3	603319	ANXA9, ANX31	Annexin A9 (annexin XXXI)	ANXA9	8416	ENSG00000143412			Anxa9 (MGI:1923711)
chr1	151008390	151035712	1q21.3	1q21.3	617413	PRUNE1, DRES17, NMIHBA	Prune exopolyphosphatase 1	PRUNE1	58497	ENSG00000143363		Neurodevelopmental disorder with microcephaly, hypotonia, and variable brain anomalies, 617481 (3), Autosomal recessive	Prune1 (MGI:1925152)
chr1	151036320	151047599	1q21.3	1q21.3	611275	BNIPL, BNIPS, BNIPL1, BNIPL2	BCL2/adenovirus E1B 19kD protein-interacting protein 2-like	BNIPL	149428	ENSG00000163141			Bnipl (MGI:2384749)
chr1	151059674	151068496	1q21	1q21.3	604684	MLLT11, AF1Q	Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 11	MLLT11	10962	ENSG00000213190			Mllt11 (MGI:1929671)
chr1	151131684	151148407	1q21.3	1q21.3	609294	SEMA6C, KIAA1869	Semaphorin 6C	SEMA6C	10500	ENSG00000143434			Sema6c (MGI:1338032)
chr1	151156628	151159748	1q21.2-q21.3	1q21.3	612112	TNFAIP8L2, TIPE2	Tumor necrosis factor-alpha-induced protein 8-like 2	TNFAIP8L2	79626	ENSG00000163154			Tnfaip8l2 (MGI:1917019)
chr1	151166021	151170296	1q21.3	1q21.3	608095	SCNM1, MGC3180	Sodium channel modifier 1	SCNM1	79005	ENSG00000163156			Scnm1 (MGI:1341284)
chr1	151169985	151176070	1q12	1q21.3	605834	TMOD4	Tropomodulin 4, muscle	TMOD4	29765	ENSG00000163157			Tmod4 (MGI:1355285)
chr1	151176299	151190212	1q21	1q21.3	600607	VPS72, CFL1, YL1	Vacuolar protein sorting 72, yeast, homolog of	VPS72	6944	ENSG00000163159			Vps72 (MGI:1202305)
chr1	151197953	151249535	1q22-q24	1q21.3	603275	PIP5K1A	Phosphatidylinositol-4-phosphate 5-kinase, type I, alpha	PIP5K1A	8394	ENSG00000143398			Pip5k1a (MGI:107929)
chr1	151254699	151267478	1q21.3	1q21.3	601648	PSMD4, S5A, RPN10	Proteasome 26S subunit, non-ATPase, 4	PSMD4	5710	ENSG00000159352			Psmd4 (MGI:1201670)
chr1	151281554	151291904	1q21.2	1q21.3	610568	ZNF687, KIAA1441, PDB6	Zinc finger protein 687	ZNF687	57592	ENSG00000143373	fused with AML1 in t(1;21)	Paget disease of bone 6, 616833 (3), Autosomal dominant	Zfp687 (MGI:1925516)
chr1	151291796	151327714	1q21.1-q21.3	1q21.3	602758	PIK4CB	Phosphatidylinositol 4-kinase, catalytic, beta polypeptide	PI4KB	5298	ENSG00000143393			Pi4kb (MGI:1334433)
chr1	151340639	151347318	1q21.1-q21.3	1q21.3	601863	RFX5	Regulatory factor X, 5 (influences HLA class II expression)	RFX5	5993	ENSG00000143390		Bare lymphocyte syndrome, type II, complementation group C, 209920 (3), Autosomal recessive; Bare lymphocyte syndrome, type II, complementation group E, 209920 (3), Autosomal recessive	
chr1	151364301	151372733	1q21-q22	1q21.3	604188	SELENBP1, SP56	Selenium-binding protein 1	SELENBP1	8991	ENSG00000143416			Selenbp2,Selenbp1 (MGI:96825,MGI:104859)
chr1	151399564	151401935	1q21	1q21.3	602177	PSMB4	Proteasome subunit, beta type, 4	PSMB4	5692	ENSG00000159377			Psmb4 (MGI:1098257)
chr1	151402723	151459464	1q21.3	1q21.3	614787	POGZ, KIAA0461, MRD37, WHSUS	POGO transposable element with ZNF domain	POGZ	23126	ENSG00000143442		White-Sutton syndrome, 616364 (3), Autosomal dominant	Pogz (MGI:2442117)
chr1	151540293	151583582	1q21	1q21.3	600087	TUFT1	Tuftelin 1	TUFT1	7286	ENSG00000143367	?mutant in amelogenesis imperfecta		Tuft1 (MGI:109572)
chr1	151612026	151699082	1q21.3	1q21.3	611541	SNX27, MRT1	Sorting nexin 27	SNX27	81609	ENSG00000143376			Snx27 (MGI:1923992)
chr1	151696651	151716820	1q21	1q21.3	612678	CELF3, TNRC4, BRUNOL1	CUGbp- and ELAV-like family, member 3	CELF3	11189	ENSG00000159409			Celf3 (MGI:1926034)
chr1	151759642	151763915	1q21	1q21.3	611824	MRPL9	Mitochondrial ribosomal protein L9	MRPL9	65005	ENSG00000143436			Mrpl9 (MGI:2137211)
chr1	151762968	151771329	1q21.3	1q21.3	605138	OAZ3, AZ3	Ornithine decarboxylase antizyme 3	OAZ3	51686	ENSG00000143450			Oaz3 (MGI:1858170)
chr1	151800263	151805441	1q21.3	1q21.3	609794	LINGO4, LRRN6D	Leucine-rich repeat- and Ig domain-containing NOGO receptor-interacting protein 4	LINGO4	339398	ENSG00000213171			Lingo4 (MGI:2444651)
chr1	151806070	151832450	1q21	1q21.3	602943	RORC, RORG, RZRG, IMD42	RAR-related orphan receptor C	RORC	6097	ENSG00000143365		Immunodeficiency 42, 616622 (3), Autosomal recessive	Rorc (MGI:104856)
chr1	151847100	151853696	1q21.3	1q21.3	615653	THEM5, ACOT15	Thioesterase superfamily member 5	THEM5	284486				Them5 (MGI:1913448)
chr1	151870865	151909884	1q21	1q21.3	606388	CTMP	C-terminal modulator protein	THEM4	117145	ENSG00000159445			Them4 (MGI:1923028)
chr1	151982909	151994237	1q21	1q21.3	114085	S100A10, CAL1L	S100 calcium-binding protein A10 (annexin II ligand, calpactin I, light polypeptide (p11))	S100A10	6281	ENSG00000197747	on chr.3 in mouse		S100a10 (MGI:1339468)
chr1	152032505	152037034	1q21	1q21.3	603114	S100A11	S100 calcium-binding protein A11	S100A11	6282	ENSG00000163191			S100a11-ps (MGI:3645720)
chr1	152106316	152115453	1q21.3	1q21.3	190370	TCHH, THH, THL, TRHY, UHS3	Trichohyalin	TCHH	7062	ENSG00000159450	mutation identified in 1 UHS3 patient	?Uncombable hair syndrome 3, 617252 (3), Autosomal recessive	
chr1	152153594	152159227	1q21	1q21.3	613259	RPTN	Repetin	RPTN	126638	ENSG00000215853			Rptn (MGI:1099055)
chr1	152212075	152224195	1q21.3	1q21.3	616293	HRNR	Hornerin	HRNR	388697	ENSG00000197915			
chr1	152302174	152325202	1q21	1q21.3	135940	FLG, ATOD2	Filaggrin	FLG	2312	ENSG00000143631		{Dermatitis, atopic, susceptibility to, 2}, 605803 (3); Ichthyosis vulgaris, 146700 (3), Autosomal dominant	
chr1	152348734	152360027	1q21.3	1q21.3	616284	FLG2, IFPS	Filaggrin family, member 2	FLG2	388698	ENSG00000143520			
chr1	152510843	152512176	1q21	1q21.3	612619	LCE5A, LEP18	Late cornified envelope protein 5A	LCE5A	254910	ENSG00000186207			
chr1	152514501	152516009	1q21.3	1q21.3	617426	CRCT1, NICE1, C1orf42	Cysteine-rich c-terminal 1	CRCT1	54544	ENSG00000169509			
chr1	152565653	152566769	1q21	1q21.3	612617	LCE3E, LEP17	Late cornified envelope protein 3E	LCE3E	353145	ENSG00000185966			
chr1	152579383	152580503	1q21	1q21.3	612616	LCE3D, LEP16	Late cornified envelope protein 3D	LCE3D	84648	ENSG00000163202	within intron 2 of LCE3C		
chr1	152600661	152601085	1q21	1q21.3	612615	LCE3C, LEP15	Late cornified envelope protein 3C	LCE3C	353144	ENSG00000244057			
chr1	152613810	152614097	1q21	1q21.3	612614	LCE3B, LEP14	Late cornified envelope protein 3B	LCE3B	353143	ENSG00000187238			
chr1	152622833	152623102	1q21	1q21.3	612613	LCE3A, LEP13	Late cornified envelope protein 3A	LCE3A	353142	ENSG00000185962			
chr1	152663410	152664658	1q21	1q21.3	612612	LCE2D, LEP12	Late cornified envelope protein 2D	LCE2D	353141	ENSG00000187223			
chr1	152675314	152676573	1q21	1q21.3	612611	LCE2C, LEP11	Late cornified envelope protein 2C	LCE2C	353140	ENSG00000187180			
chr1	152686122	152687400	1q21	1q21.3	612610	LCE2B, LEP10, XP5	Late cornified envelope protein 2B	LCE2B	26239	ENSG00000159455			
chr1	152698363	152699441	1q21	1q21.3	612609	LCE2A, LEP9	Late cornified envelope protein 2A	LCE2A	353139	ENSG00000187173			
chr1	152709046	152709433	1q21	1q21.3	612618	LCE4A, LEP8	Late cornified envelope protein 4A	LCE4A	199834	ENSG00000187170			
chr1	152758029	152762052	1q21	1q21.3	613260	KPRP	Keratinocyte proline-rich protein	KPRP	448834	ENSG00000203786			Kprp (MGI:1920981)
chr1	152776371	152776968	1q21	1q21.3	612608	LCE1F, LEP6	Late cornified envelope protein 1F	LCE1F	353137	ENSG00000240386			
chr1	152786276	152788425	1q21	1q21.3	612607	LCE1E	Late cornified envelope protein 1E	LCE1E	353135	ENSG00000186226			
chr1	152796750	152798180	1q21	1q21.3	612606	LCE1D, LEP4	Late cornified envelope protein 1D	LCE1D	353134	ENSG00000172155			
chr1	152804834	152806630	1q21	1q21.3	612605	LCE1C, LEP3	Late cornified envelope 1C	LCE1C	353133	ENSG00000197084			
chr1	152811970	152813108	1q21	1q21.3	612604	LCE1B, LEP2	Late cornified envelope protein 1B	LCE1B	353132	ENSG00000196734			
chr1	152827472	152828096	1q21	1q21.3	612603	LCE1A, LEP1	Late cornified envelope protein 1A	LCE1A	353131	ENSG00000186844			
chr1	152878321	152885046	1q21	1q21.3	601148	SMCP, MCSP, MCS	Sperm mitochondria-associated cysteine-rich protein	SMCP	4184	ENSG00000163206			
chr1	152908544	152911885	1q21	1q21.3	147360	IVL	Involucrin	IVL	3713	ENSG00000163207			
chr1	152968754	152972601	1q21	1q21.3	616363	SPRR4	Small proline-rich protein 4	SPRR4	163778	ENSG00000184148			
chr1	152984087	152985813	1q21-q22	1q21.3	182265	SPRR1A	Small proline-rich protein 1A	SPRR1A	6698	ENSG00000169474			Sprr1a (MGI:106660)
chr1	153001746	153003855	1q21-q22	1q21.3	182271	SPRR3	Small proline-rich protein 3	SPRR3	6707	ENSG00000163209			Sprr3 (MGI:1330237)
chr1	153031202	153032899	1q21-q22	1q21.3	182266	SPRR1B	Small proline-rich protein 1B	SPRR1B	6699	ENSG00000169469			
chr1	153039724	153041143	1q21.3	1q21.3	617587	SPRR2D	Small proline-rich protein 2D	SPRR2D	6703	ENSG00000163216			
chr1	153056119	153057511	1q21-q22	1q21.3	182267	SPRR2A	Small proline-rich protein 2A	SPRR2A	6700	ENSG00000241794	about 7 SPRR2 genes		
chr1	153070225	153071607	1q21-q22	1q21.3	182268	SPRR2B	Small proline-rich protein 2B	SPRR2B	6701	ENSG00000196805			
chr1	153093134	153094527	1q21.3	1q21.3	617588	SPRR2E	Small proline-rich protein 2E	SPRR2E	6704	ENSG00000203785			
chr1	153112120	153119459	1q21.3	1q21.3	617589	SPRR2F	Small proline-rich protein 2F	SPRR2F	6705	ENSG00000244094			
chr1	153149581	153195376	1q21.3	1q21.3	617590	SPRR2G	Small proline-rich protein 2G	SPRR2G	6706	ENSG00000159516			
chr1	153203429	153205124	1q21	1q21.3	611042	LELP1	Late cornified envelope-like proline-rich 1	LELP1	149018	ENSG00000203784			
chr1	153259634	153262124	1q21	1q21.3	152445	LOR	Loricrin	LOR	4014	ENSG00000203782		Vohwinkel syndrome with ichthyosis, 604117 (3), Autosomal dominant	
chr1	153297588	153312974	1q21	1q21.3	608197	PGRPIA	Peptidoglycan recognition protein, intermediate, alpha	PGLYRP3	114771	ENSG00000159527			Pglyrp3 (MGI:2685266)
chr1	153327409	153348843	1q21	1q21.3	608198	PGRPIB	Peptidoglycan recognition protein, intermediate, beta	PGLYRP4	57115	ENSG00000163218			Pglyrp4 (MGI:2686324)
chr1	153357853	153361026	1q12-q22	1q21.3	123886	S100A9, CAGB, CFAG	S100 calcium-binding protein A9 (calgranulin B)	S100A9	6280	ENSG00000163220			S100a9 (MGI:1338947)
chr1	153373707	153375598	1q21	1q21.3	603112	S100A12, CAAF1, CGRP	S100 calcium-binding protein A12	S100A12	6283	ENSG00000163221	between S100A8 and S100A9		
chr1	153390031	153422582	1q21	1q21.3	123885	S100A8, CAGA, CFAG	S100 calcium-binding protein A8 (calgranulin A)	S100A8	6279	ENSG00000143546	over-expressed in 1q21-linked psoriasis		S100a8 (MGI:88244)
chr1	153416523	153423224	1q21.3	1q21.3	617427	S100A7A, S100A15, NICE2	S100 calcium-binding protein A7A	S100A7A	338324	ENSG00000184330			
chr1	153457743	153460660	1q21	1q21.3	600353	S100A7	S100 calcium-binding protein A7	S100A7	6278	ENSG00000143556			
chr1	153534598	153536240	1q21	1q21.3	114110	S100A6, CACY	S100 calcium-binding protein A6 (calcyclin)	S100A6	6277	ENSG00000197956			S100a6 (MGI:1339467)
chr1	153537113	153543513	1q21	1q21.3	176991	S100A5, S100D	S100 calcium-binding protein A5	S100A5	6276	ENSG00000196420			S100a5 (MGI:1338915)
chr1	153543618	153545805	1q21	1q21.3	114210	S100A4, CAPL	S100 calcium-binding protein A4 (calcium protein, calvasculin, metastasin, murine placental homolog)	S100A4	6275	ENSG00000196154			S100a4 (MGI:1330282)
chr1	153547332	153549257	1q21	1q21.3	176992	S100A3, S100E	S100 calcium-binding protein A3	S100A3	6274	ENSG00000188015			S100a3 (MGI:1338849)
chr1	153561107	153565829	1q21	1q21.3	176993	S100A2, S100L	S100 calcium-binding protein A2	S100A2	6273	ENSG00000196754			
chr1	153606882	153613167	1p21.3	1q21.3	617437	S100A16, AAG13	S100 calcium-binding protein A16	S100A16	140576	ENSG00000188643			S100a16 (MGI:1915110)
chr1	153614254	153616916	1q21	1q21.3	607986	S100A14, BCMP84	S100 Calcium-binding protein A14	S100A14	57402	ENSG00000189334			S100a14 (MGI:1913416)
chr1	153618798	153634091	1q21	1q21.3	601989	S100A13	S100 calcium-binding protein A13	S100A13	6284	ENSG00000189171			S100a13 (MGI:109581)
chr1	153628396	153632036	1q21	1q21.3	176940	S100A1	S100 protein, alpha polypeptide	S100A1	6271	ENSG00000160678			S100a1 (MGI:1338917)
chr1	153633981	153646305	1q21.3	1q21.3	614206	CHTOP, C10orf77, SRAG, FOP	Chromatin target of PRMT1	CHTOP	26097	ENSG00000160679			
chr1	153658653	153661851	1q22	1q21.3	607007	SNAPIN, SNAPAP, BLOC1S7, BLOS7	SNAP-associated protein	SNAPIN	23557	ENSG00000143553			Snapin (MGI:1333745)
chr1	153678648	153693991	1q21-q22	1q21.3	108960	NPR1, ANPRA	Natriuretic peptide receptor A/guanylate cyclase A	NPR1	4881	ENSG00000169418			Npr1 (MGI:97371)
chr1	153728066	153774807	1q21.3	1q21.3	611347	INTS3, INT3, SOSSA	Integrator complex subunit 3	INTS3	65123	ENSG00000143624			Ints3 (MGI:2140050)
chr1	153774353	153780159	1q21.3	1q21.3	604193	SLC27A3, FATP3	Solute carrier family 27 (fatty acid transporter), member 3	SLC27A3	11000	ENSG00000143554			Slc27a3 (MGI:1347358)
chr1	153804906	153923952	1q23.1	1q21.3	614998	GATAD2B, KIAA1150, p68, MRD18	GATA zinc finger domain-containing protein 2B	GATAD2B	57459	ENSG00000143614		Mental retardation, autosomal dominant 18, 615074 (3), Autosomal dominant	Gatad2b (MGI:2443225)
chr1	153947671	153958655	1q21.3	1q21.3	608972	CRTC2, TORC2	CREB-regulated transcription coactivator 2	CRTC2	200186	ENSG00000160741			Crtc2 (MGI:1921593)
chr1	153959098	153968183	1q21	1q21.3	604740	SLC39A1, ZIRTL	Solute carrier family 39 (zinc transporter), member 3 (zinc/iron-regulated transporter-like)	SLC39A1	27173	ENSG00000143570	REc		Slc39a1 (MGI:1353474)
chr1	153967486	153974363	1q21.3	1q21.3	607138	CREB3L4, CREB4, AIBZIP	cAMP responsive element binding protein 3-like 4	CREB3L4	148327	ENSG00000143578			Creb3l4 (MGI:1916603)
chr1	153974268	153977974	1q21	1q21.3	604671	JTB, PAR	Jumping translocation breakpoint	JTB	10899	ENSG00000143543			Jtb (MGI:1346082)
chr1	153981616	153990643	1q21.3	1q21.3	602672	RAB13	RAB13, member RAS oncogene family	RAB13	5872	ENSG00000143545	previously assigned to 12q13 by in situ hybridization		Rab13 (MGI:1927232)
chr1	153990754	153992154	1q21	1q21.3	603702	RPS27, MPS1, DBA17	Ribosomal protein S27	RPS27	6232	ENSG00000185088	mutation identified in 1 DBA17 patient	?Diamond-Blackfan anemia 17, 617409 (3), Autosomal dominant	
chr1	154155303	154192134	1q22-q23	1q21.3	191030	TPM3, NEM1, CFTD, CAPM1	Tropomyosin 3	TPM3	7170	ENSG00000143549	TRK = chimera of TPM3 and NTRK1; NEM1 to 1q21-q23 by Fd	CAP myopathy 1, 609284 (3), Autosomal recessive, Autosomal dominant; Myopathy, congenital, with fiber-type disproportion, 255310 (3), Autosomal recessive, Autosomal dominant; Nemaline myopathy 1, autosomal dominant or recessive, 609284 (3), Autosomal recessive, Autosomal dominant	Tpm3 (MGI:1890149)
chr1	154206700	154220796	1q21.3	1q21.3	617428	C1orf43, NS5ATP4, NICE3	Chromosome 1 open reading frame 43	C1orf43	25912	ENSG00000143612			4933434E20Rik (MGI:1914027)
chr1	154220171	154271509	1q21.3	1q21.3	616472	UBAP2L, NICE4	Ubiquitin-associated protein 2-like	UBAP2L	9898	ENSG00000143569			
chr1	154272562	154275874	1q21.3	1q21.3	605998	HAX1, SCN3	HCLS1-associated protein X1	HAX1	10456	ENSG00000143575		Neutropenia, severe congenital 3, autosomal recessive, 610738 (3), Autosomal recessive	Hax1 (MGI:1346319)
chr1	154321058	154325324	1q21.3	1q21.3	606578	AQP10	Aquaporin 10	AQP10	89872	ENSG00000143595			
chr1	154325559	154351303	1q21.3	1q21.3	605867	ATP8B2, ATPID	ATPase, class I, type 8B, member 2	ATP8B2	57198	ENSG00000143515			Atp8b2 (MGI:1859660)
chr1	154405192	154469449	1q21.3	1q21.3	147880	IL6R, IL6RQ, IL6Q	Interleukin-6 receptor	IL6R	3570	ENSG00000160712	IL6R-like gene on chr.9	[Interleukin 6, serum level of, QTL], 614752 (3); [Interleukin-6 receptor, soluble, serum level of, QTL], 614689 (3)	Il6ra (MGI:105304)
chr1	154467194	154502559	1q21.3	1q21.3	610482	SHE	SH2 domain-containing protein E	SHE	126669	ENSG00000169291			She (MGI:1099462)
chr1	154548574	154558643	1q21.3	1q21.3	617429	UBE2Q1, GTAP, NICE5	Ubiquitin-conjugating enzyme E2Q family member 1	UBE2Q1	55585	ENSG00000160714			Ube2q1 (MGI:1917343)
chr1	154567780	154584707	1q21	1q21.3	118507	CHRNB2, EFNL3	Cholinergic receptor, nicotinic, beta polypeptide-2	CHRNB2	1141	ENSG00000160716	linked to AMY in mouse	Epilepsy, nocturnal frontal lobe, 3, 605375 (3)	Chrnb2 (MGI:87891)
chr1	154582056	154631559	1q21.3	1q21.3	146920	ADAR, DRADA, DSH, DSRAD, IFI4, G1P1, AGS6	Adenosine deaminase, RNA-specific	ADAR	103	ENSG00000160710		Aicardi-Goutieres syndrome 6, 615010 (3), Autosomal recessive; Dyschromatosis symmetrica hereditaria, 127400 (3), Autosomal dominant	Adar (MGI:1889575)
chr1	154697461	154870277	1q21.3	1q21.3	602983	KCNN3, SK3, SKCA3	Potassium channel, calcium-activated, intermediate/small conductance, subfamily N, member 3	KCNN3	3782	ENSG00000143603			Kcnn3 (MGI:2153183)
chr1	154924731	154942688	1q21.3	1q21.3	607622	PMVK, PMK, POROK1	Phosphomevalonate kinase	PMVK	10654	ENSG00000163344		Porokeratosis 1, multiple types, 175800 (3), Autosomal dominant	Pmvk (MGI:1915853)
chr1	154957025	154961781	1q21.3	1q21.3	606903	PYGO2	Pygopus, Drosophila, homolog of, 2	PYGO2	90780	ENSG00000163348			Pygo2 (MGI:1916161)
chr1	154962297	154974491	1q21	1q21.3	600560	SHC1	SHC (Src homology 2 domain-containing) transforming protein-1	SHC1	6464	ENSG00000160691			Shc1 (MGI:98296)
chr1	154974641	154979248	1q21.3	1q21.3	116900	CKS1B, CKS1	CDC28 protein kinase 1B	CKS1B	1163	ENSG00000173207	previously to 8q21 by FISH		Cks1b (MGI:1889208)
chr1	154983293	154993110	1q21.3	1q21.3	610595	FLAD1, FADS, LSMFLAD	Flavin adenine dinucleotide synthetase, S. cerevisiae, homolog of	FLAD1	80308	ENSG00000160688		Lipid storage myopathy due to flavin adenine dinucleotide synthetase deficiency, 255100 (3), Autosomal recessive	Flad1 (MGI:2443030)
chr1	154993585	154994314	1q22	1q21.3	607377	LENEP, LEP503	Lens epithelial protein	LENEP	55891	ENSG00000163352			Lenep (MGI:1930020)
chr1	155002627	155018524	1q21.3	1q21.3	607646	ZBTB7B, ZFP67, CKROX, THPOK	Zinc finger- and BTB domain-containing protein 7B	ZBTB7B	51043	ENSG00000160685			Zbtb7b (MGI:102755)
chr1	155051271	155062775	1q21.3	1q21.3	605548	ADAM15, MDC15	A disintegrin and metalloproteinase domain 15	ADAM15	8751	ENSG00000143537			Adam15 (MGI:1333882)
chr1	155063736	155069552	1q21-q22	1q21.3	601380	EFNA4, EPLG4	eph-related receptor tyrosine kinase ligand 4 (ephrin-A4)	EFNA4	1945	ENSG00000243364			Efna4 (MGI:106643)
chr1	155078871	155087537	1q21-q22	1q21.3	601381	EFNA3, EPLG3	eph-related receptor tyrosine kinase ligand 3 (ephrin A3)	EFNA3	1944	ENSG00000143590			Efna3 (MGI:106644)
chr1	155127872	155134909	1q21-q22	1q22	191164	EFNA1, EPLG1, TNFAIP4	eph-related receptor tyrosine kinase ligand 1 (tumor necrosis factor, alpha-induced protein 4)	EFNA1	1942	ENSG00000169242			Efna1 (MGI:103236)
chr1	155135343	155138857	1q22	1q22	613683	SLC50A1, RAG1AP1	Solute carrier family 50 (sugar transporter), member 1	SLC50A1	55974	ENSG00000169241			Slc50a1 (MGI:107417)
chr1	155139890	155140572	1q12-q21	1q22	605951	DPM3, CDG1O	Dolichyl-phosphate mannosyltransferase 3	DPM3	54344	ENSG00000179085		Congenital disorder of glycosylation, type Io, 612937 (3)	Dpm3 (MGI:1915813)
chr1	155173380	155184970	1q21	1q22	600986	GENEY	Gene Y	TRIM46	80128	ENSG00000163462			Trim46 (MGI:2673000)
chr1	155185823	155192914	1q21	1q22	158340	MUC1, PUM, MCKD1	Mucin 1, transmembrane	MUC1	4582	ENSG00000185499	5cM proximal to SPTA1	Medullary cystic kidney disease 1, 174000 (3), Autosomal dominant	
chr1	155195587	155209179	1q21	1q22	188062	THBS3, TSP3	Thrombospondin 3	THBS3	7059	ENSG00000169231			Thbs3 (MGI:98739)
chr1	155208698	155213838	1q21	1q22	600605	MTX1, MTXN	Metaxin 1	MTX1	4580	ENSG00000173171	between GBA and TSP3		Mtx1 (MGI:103025)
chr1	155234447	155244861	1q21	1q22	606463	GBA	Glucosidase, acid beta	GBA	2629	ENSG00000177628	pseudogene GBAP ~16kb 3' to GBA	Gaucher disease, perinatal lethal, 608013 (3), Autosomal recessive; Gaucher disease, type I, 230800 (3), Autosomal recessive; Gaucher disease, type II, 230900 (3), Autosomal recessive; Gaucher disease, type III, 231000 (3), Autosomal recessive; Gaucher disease, type IIIC, 231005 (3), Autosomal recessive; {Lewy body dementia, susceptibility to}, 127750 (3), Autosomal dominant; {Parkinson disease, late-onset, susceptibility to}, 168600 (3), Isolated cases, Multifactorial	Gba (MGI:95665)
chr1	155255978	155262384	1q21	1q22	606913	SCAMP3, PROPIN1	Secretory carrier membrane protein 3	SCAMP3	10067	ENSG00000116521			Scamp3 (MGI:1346346)
chr1	155262867	155273528	1p31	1q22	602989	CLK2	CDC-like kinase 2	CLK2	1196	ENSG00000176444	near GDLD and PRKAA2; conflicting assignment 1q21		Clk2 (MGI:1098669)
chr1	155277426	155289847	1q22	1q22	609973	HCN3, KIAA1535	Hyperpolarization-activated cyclic nucleotide-gated potassium channel 3	HCN3	57657	ENSG00000143630			Hcn3 (MGI:1298211)
chr1	155289292	155301433	1q21	1q22	609712	PKLR, PK1	Pyruvate kinase, liver and RBC type	PKLR	5313	ENSG00000143627		Adenosine triphosphate, elevated, of erythrocytes, 102900 (3), Autosomal dominant; Pyruvate kinase deficiency, 266200 (3), Autosomal recessive	Pklr (MGI:97604)
chr1	155308747	155320665	1q22	1q22	134629	FDPS, FPS, POROK9	Farnesyl diphosphate synthase	FDPS	2224	ENSG00000160752		Porokeratosis 9, multiple types, 616631 (3), Autosomal dominant	Fdps (MGI:104888)
chr1	155320848	155331117	1q22	1q22	617318	RUSC1, NESCA	RUN domain- and SH3 domain-containing protein 1	RUSC1	23623	ENSG00000160753			Rusc1 (MGI:1919546)
chr1	155335260	155563159	1q22	1q22	607999	ASH1L, KIAA1420, ASH1, MRD52	ash1 (absent, small, or homeotic), Drosophila, homolog of	ASH1L	55870	ENSG00000116539		Mental retardation, autosomal dominant 52, 617796 (3), Autosomal dominant	Ash1l (MGI:2183158)
chr1	155610169	155614966	1q22	1q22	617619	MSTO1, MMYAT	Misato 1, mitochondrial distribution and morphology regulator	MSTO1	55154	ENSG00000125459		Myopathy, mitochondrial, and ataxia, 617675 (3), Autosomal recessive, Autosomal dominant	Msto1 (MGI:2385175)
chr1	155659441	155689031	1q22	1q22	607860	YY1AP1, YAP, HCCA2, GRNG	YY1 associated protein 1	YY1AP1	55249	ENSG00000163374		Grange syndrome, 602531 (3), Autosomal recessive	
chr1	155687901	155739009	1q21	1q22	602074	DAP3	Death associated protein 3	DAP3	7818	ENSG00000132676			Dap3 (MGI:1929538)
chr1	155749657	155859425	1q22	1q22	610393	GON4L, KIAA1606	GON4-like protein	GON4L	54856	ENSG00000116580			Gon4l (MGI:1917579)
chr1	155897807	155911401	1q22	1q22	609591	RIT1, RIT, ROC1, NS8	Ric-like protein without CAAX motif 1	RIT1	6016	ENSG00000143622		Noonan syndrome 8, 615355 (3), Autosomal dominant	Rit1 (MGI:108053)
chr1	155941688	155942833	1q22	1q22	609043	RXFP4, RLN3R2, GPR100, GPCR142	Relaxin/insulin-like family peptide receptor 4	RXFP4	339403	ENSG00000173080			Rxfp4 (MGI:2182926)
chr1	155946838	155991261	1q21-q22	1q22	607560	ARHGEF2, GEFH1, KIAA0651, NEDMHM	RHO guanine nucleotide exchange factor 2	ARHGEF2	9181	ENSG00000116584	mutation identified in 1 NEDMHM family	?Neurodevelopmental disorder with midbrain and hindbrain malformations, 617523 (3), Autosomal recessive	Arhgef2 (MGI:103264)
chr1	156009047	156020966	1q21-q23	1q22	600867	SSR2	Signal sequence receptor, beta	SSR2	6746	ENSG00000163479			Ssr2 (MGI:1913506)
chr1	156033128	156053824	1q21	1q22	605440	UBQLN4, A1U, C1orf6	Ubiquitin 4	UBQLN4	56893	ENSG00000160803			Ubqln4 (MGI:2150152)
chr1	156054725	156058509	1q22	1q22	610389	LAMTOR2, MAPBPIP, p14	Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2	LAMTOR2	28956	ENSG00000116586		Immunodeficiency due to defect in MAPBP-interacting protein, 610798 (3), Autosomal recessive	Lamtor2 (MGI:1932697)
chr1	156061148	156070513	1q22	1q22	612942	RAB25, RAB11C	Ras-associated protein RAB25	RAB25	57111	ENSG00000132698			Rab25 (MGI:1858203)
chr1	156072012	156081997	1q22	1q22	611007	MEX3A	Mex-3, C. elegans, homolog of, A	MEX3A	92312	ENSG00000254726			Mex3a (MGI:1919890)
chr1	156082545	156140088	1q21.2	1q22	150330	LMNA, LMN1, EMD2, FPLD2, CMD1A, HGPS, LGMD1B	Lamin A/C	LMNA	4000	ENSG00000160789		Cardiomyopathy, dilated, 1A, 115200 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 2B1, 605588 (3), Autosomal recessive; Emery-Dreifuss muscular dystrophy 2, AD, 181350 (3), Autosomal dominant; Emery-Dreifuss muscular dystrophy 3, AR, 616516 (3), Autosomal recessive; Heart-hand syndrome, Slovenian type, 610140 (3), Autosomal dominant; Hutchinson-Gilford progeria, 176670 (3), Autosomal recessive, Autosomal dominant; Lipodystrophy, familial partial, type 2, 151660 (3), Autosomal dominant; Malouf syndrome, 212112 (3), Autosomal dominant; Mandibuloacral dysplasia, 248370 (3), Autosomal recessive; Muscular dystrophy, congenital, 613205 (3), Autosomal dominant; Muscular dystrophy, limb-girdle, type 1B, 159001 (3), Autosomal dominant; Restrictive dermopathy, lethal, 275210 (3), Autosomal recessive	Lmna (MGI:96794)
chr1	156149671	156177750	1q22	1q22	607292	SEMA4A, SEMB, RP35, CORD10	Semaphorin 4A	SEMA4A	64218	ENSG00000196189		Cone-rod dystrophy 10, 610283 (3), Autosomal recessive; Retinitis pigmentosa 35, 610282 (3), Autosomal recessive, Autosomal dominant	Sema4a (MGI:107560)
chr1	156193931	156212795	1q22	1q22	610824	SLC25A44	Solute carrier family 25, member 44	SLC25A44	9673	ENSG00000160785			Slc25a44 (MGI:2444391)
chr1	156212987	156240076	1q12	1q22	609176	PMF1	Polyamine-modulated factor 1	PMF1	11243	ENSG00000160783			Pmf1 (MGI:1914287)
chr1	156241961	156243331	1q25-q31	1q22	112260	BGLAP	Bone gamma-carboxyglutamic acid protein	BGLAP	632	ENSG00000242252			Bglap3,Bglap2,Bglap (MGI:88157,MGI:88155,MGI:88156)
chr1	156243320	156248521	1q22	1q22	614579	PAQR6	Progestin and ADIPOQ receptor family, member 6	PAQR6	79957	ENSG00000160781			Paqr6 (MGI:1916207)
chr1	156249223	156291497	1q21.2	1q22	610962	SMG5, EST1B, KIAA1089	SMG5, C. elegans, homolog of	SMG5	23381	ENSG00000198952			Smg5 (MGI:2447364)
chr1	156282912	156292442	1q23.1	1q22	615531	TMEM79, MATT	Transmembrane protein 79	TMEM79	84283	ENSG00000163472			Tmem79 (MGI:1919163)
chr1	156308960	156338414	1q23	1q22	600114	CCT3, TRIC5	Chaperonin-containing TCP1, subunit 3, gamma (TCP1 (t-complex-1) ring complex, polypeptide 5)	CCT3	7203	ENSG00000163468			Cct3 (MGI:104708)
chr1	156366043	156385220	1q21.3	1q22	607079	RHBG	Rhesus blood group, B glycoprotein	RHBG	57127	ENSG00000132677			Rhbg (MGI:1927379)
chr1	156420340	156420428	1q22	1q22	611186	MIR9-1, MIRN9-1	Micro RNA 9-1	MIR9-1	407046				
chr1	156463720	156500841	1q12-q23	1q22	600663	MEF2D	MADS box transcription enhancer factor 2, polypeptide D (myocyte enhancer factor 2D)	MEF2D	4209	ENSG00000116604			Mef2d (MGI:99533)
chr1	156591765	156599817	1q21	1q22	608862	NAXE, APOA1BP, AIBP, PEBEL	NAD(P)HX epimerase	NAXE	128240	ENSG00000163382		Encephalopathy, progressive, early-onset, with brain edema and/or leukoencephalopathy, 617186 (3), Autosomal recessive	Naxe (MGI:2180167)
chr1	156600000	165500000	1q23		605913	BDET	Bleeding disorder, east Texas type		85504			Bleeding disorder, east Texas type, 605913 (2)	
chr1	156600000	165500000	1q23		157560	D1S61, D1S111, MS336	Minisatellite 33.6		7824				
chr1	156641947	156659531	1q23.1	1q23.1	600347	BCAN	Brevican	BCAN	63827	ENSG00000132692			Bcan (MGI:1096385)
chr1	156668762	156677396	1q23.1	1q23.1	600915	NES	Nestin	NES	10763	ENSG00000132688			
chr1	156699605	156705815	1q21.3	1q23.1	180231	CRABP2, RBP6	Cellular retinoic acid-binding protein-2	CRABP2	1382	ENSG00000143320			Crabp2 (MGI:88491)
chr1	156721890	156728717	1q23.1	1q23.1	611930	ISG20L2	Interferon-stimulated exonuclease gene 20-kD-like 2	ISG20L2	81875	ENSG00000143319			Isg20l2 (MGI:2140076)
chr1	156737301	156741266	1q21-q22	1q23.1	611836	MRPL24	Mitochondrial ribosomal protein L24	MRPL24	79590	ENSG00000143314			Mrpl24 (MGI:1914957)
chr1	156742106	156752447	1q21	1q23.1	600339	HDGF	Hepatoma-derived growth factor	HDGF	3068	ENSG00000143321	previously assigned to Chr.X		Hdgf (MGI:1194494)
chr1	156767481	156800818	1q21	1q23.1	179755	PRCC, RCCP1	Papillary renal cell carcinoma, translocation-associated	PRCC	5546	ENSG00000143294	t(X;1)(p11;q21); fuses with TFE3 in RCCP	Renal cell carcinoma, papillary, 605074 (3)	Prcc (MGI:2137738)
chr1	156806237	156816852	1q21	1q23.1	604514	SH2D2A, TSAD	SH2 domain protein 2A	SH2D2A	9047	ENSG00000027869			Sh2d2a (MGI:1351596)
chr1	156815749	156881849	1q21-q22	1q23.1	191315	NTRK1, TRKA, MTC	Neurotrophic tyrosine kinase, receptor, type 1	NTRK1	4914	ENSG00000198400	TRK = chimera of TPM3 and NTRK1	Insensitivity to pain, congenital, with anhidrosis, 256800 (3), Autosomal recessive; Medullary thyroid carcinoma, familial, 155240 (3), Autosomal dominant	Ntrk1 (MGI:97383)
chr1	156840872	156858919	1q21-q23	1q23.1	147671	INSRR, IRR	Insulin receptor-related receptor	INSRR	3645	ENSG00000027644			Insrr (MGI:1346037)
chr1	156893696	156916433	1q23.1	1q23.1	610278	PEAR1	Platelet endothelial aggregation receptor 1	PEAR1	375033	ENSG00000187800			Pear1 (MGI:1920432)
chr1	157121190	157138590	1q21-q23	1q23.1	164873	ETV3, PE1	ets variant gene 3	ETV3	2117	ENSG00000117036			Etv3 (MGI:1350926)
chr1	157513376	157552532	1q21	1q23.1	605877	IRTA2	Immunoglobulin superfamily receptor translocation-associated gene 2	FCRL5	83416	ENSG00000143297			Fcrl5 (MGI:3053558)
chr1	157573748	157598079	1q21	1q23.1	605876	IRTA1	Immunoglobulin superfamily receptor translocation-associated gene 1	FCRL4	83417	ENSG00000163518	fused with IGHA1 in multiple myeloma		
chr1	157676480	157700984	1q21.2-q22	1q23.1	606510	FCRH3	Fc receptor-like protein 3	FCRL3	115352	ENSG00000160856			
chr1	157745732	157777471	1q21.2-q22	1q23.1	606509	SPAP1, SPAP1A, SPAP1B, SPAP1C	SH2 domain-containing phosphatase anchor protein 1	FCRL2	79368	ENSG00000132704			
chr1	157792248	157820149	1q21.2-q22	1q23.1	606508	FCRL1, FCRH1	Fc receptor-like protein 1	FCRL1	115350	ENSG00000163534			Fcrl1 (MGI:2442862)
chr1	157827070	157841843	1q21-q23	1q23.1	602592	CD5L	CD5 antigen-like (scavenger receptor cysteine rich family)	CD5L	922	ENSG00000073754			Cd5l (MGI:1334419)
chr1	157993272	158100261	1q23.1	1q23.1	607428	KIRREL, NEPH1	Kin of IRRE-like	KIRREL1	55243	ENSG00000183853			Kirrel (MGI:1891396)
chr1	158178037	158186426	1q21-q23	1q23.1	188410	CD1D	Thymocyte antigen CD1D	CD1D	912	ENSG00000158473			Cd1d1 (MGI:107674)
chr1	158248328	158258268	1q21-q23	1q23.1	188370	CD1A	Thymocyte antigen CD1A	CD1A	909	ENSG00000158477	genes A, B, C, D in cluster		
chr1	158285405	158331530	1q21-q23	1q23.1	188360	CD1B	Thymocyte antigen CD1B	CD1B	910	ENSG00000158485			
chr1	158289772	158294773	1q21-q23	1q23.1	188340	CD1C	Thymocyte antigen CD1C	CD1C	911	ENSG00000158481			
chr1	158353122	158357553	1q21-q23	1q23.1	188411	CD1E	Thymocyte antigen CD1E	CD1E	913	ENSG00000158488			
chr1	158610497	158686714	1q21	1q23.1	182860	SPTA1, EL2, SPH3, HS3, HPP	Spectrin, alpha, erythrocytic-1	SPTA1	6708	ENSG00000163554	17cM proximal to FY	Elliptocytosis-2, 130600 (3), Autosomal dominant; Pyropoikilocytosis, 266140 (3), Autosomal recessive; Spherocytosis, type 3, 270970 (3), Autosomal recessive	Spta1 (MGI:98385)
chr1	158831302	158849503	1q22	1q23.1	159553	MNDA	Myeloid cell nuclear differentiation antigen	MNDA	4332	ENSG00000163563			
chr1	158931176	159010082	1q21-q23	1q23.1	612677	PYHIN1, IFIX	Pyrin and Hin domain family, member 1	PYHIN1	149628	ENSG00000163564			
chr1	158999969	159055154	1q22	1q23.1	147586	IFI16	Interferon, gamma-inducible protein 16	IFI16	3428	ENSG00000163565			Ifi209,Ifi208,Ifi207,Ifi206,Ifi205,Ifi204,Ifi203,Ifi214,Ifi213,Ifi211,Mndal,Ifi203-ps (MGI:3041120,MGI:3584522,MGI:3780953,MGI:96429,MGI:96428,MGI:3695276,MGI:3646410,MGI:2442822,MGI:3840117,MGI:2138302,MGI:101847,MGI:2138243)
chr1	159059225	159132350	1q22	1q23.1-q23.2	604578	AIM2	Absent in melanoma 2	AIM2	9447	ENSG00000163568			Aim2 (MGI:2686159)
chr1	159171563	159203312	1q21.2-q22	1q23.2	609743	CADM3, IGSF4B, TSLL1, NECL1, SYNCAM3	Cell adhesion molecule 3	CADM3	57863	ENSG00000162706			Cadm3 (MGI:2137858)
chr1	159204012	159206499	1q23.2	1q23.2	613665	ACKR1, DARC, FY, GPD, WBCQ1	Atypical chemokine receptor 1 (Duffy antigen receptor for chemokines)	ACKR1	2532	ENSG00000213088	by A, 1q22-q23	[Blood group, Duffy system], 110700 (3), Autosomal recessive, Autosomal dominant; {Malaria, vivax, protection against}, 611162 (3); [White blood cell count QTL], 611862 (3), Autosomal recessive	Ackr1 (MGI:1097689)
chr1	159283887	159308223	1q23	1q23.2	147140	FCER1A	Fc IgE receptor, alpha polypeptide	FCER1A	2205	ENSG00000179639			Fcer1a (MGI:95494)
chr1	159587825	159588870	1q21-q23	1q23.2	104770	APCS, SAP	Amyloid P component, serum	APCS	325	ENSG00000132703	probably close to CRP	{?Amyloidosis, secondary, susceptibility to} (1)	Apcs (MGI:98229)
chr1	159712288	159714588	1q21-q23	1q23.2	123260	CRP	C-reactive protein	CRP	1401	ENSG00000132693			Crp (MGI:88512)
chr1	159826688	159837496	1q21	1q23.2	606620	SLAMF8, BLAME	SLAM family, member 8	SLAMF8	56833	ENSG00000158714			Slamf8 (MGI:1921998)
chr1	159872363	159900115	1q22-q24	1q23.2	605152	CCDC19, NESG1	Coiled-coil domain-containing 19	CFAP45	25790	ENSG00000213085			Cfap45 (MGI:1919120)
chr1	159918106	159925541	1q21-q25	1q23.2	604634	TAGLN2	Transgelin 2	TAGLN2	8407	ENSG00000158710			Tagln2 (MGI:1312985)
chr1	159927038	159945660	1q22-q23	1q23.2	609738	IGSF9, KIAA1355	Immunoglobulin superfamily, member 9	IGSF9	57549	ENSG00000085552			Igsf9 (MGI:2135283)
chr1	160027671	160031992	1q23.2	1q23.2	610273	PIGM	Phosphatidylinositol glycan, class M	PIGM	93183	ENSG00000143315		Glycosylphosphatidylinositol deficiency, 610293 (3), Autosomal recessive	Pigm (MGI:1914806)
chr1	160037466	160070260	1q23.2	1q23.2	602208	KCNJ10, SESAME	Potassium inwardly-rectifying channel, subfamily J, member 10	KCNJ10	3766	ENSG00000177807		Enlarged vestibular aqueduct, digenic, 600791 (3), Autosomal recessive; SESAME syndrome, 612780 (3), Autosomal recessive	Kcnj10 (MGI:1194504)
chr1	160055000	160090562	1q23.2	1q23.2	600932	KCNJ9, GIRK3	Potassium inwardly-rectifying channel, subfamily J, member 9	KCNJ9	3765	ENSG00000162728			Kcnj9 (MGI:108007)
chr1	160091338	160099441	1q23.1	1q23.2	606644	IGSF8, PGRL, CD81P3	Immunoglobulin superfamily, member 8	IGSF8	93185	ENSG00000162729			Igsf8 (MGI:2154090)
chr1	160115729	160143590	1q21-q23	1q23.2	182340	ATP1A2, FHM2, MHP2	ATPase, Na+K+ transporting, alpha-2 polypeptide	ATP1A2	477	ENSG00000018625		Alternating hemiplegia of childhood 1, 104290 (3), Autosomal dominant; Migraine, familial basilar, 602481 (3), Autosomal dominant; Migraine, familial hemiplegic, 2, 602481 (3), Autosomal dominant	Atp1a2 (MGI:88106)
chr1	160151561	160186976	1q21-q32	1q23.2	607321	ATP1A4, ATP1AL2	ATPase, Na+/K+ transporting, alpha-4 polypeptide	ATP1A4	480	ENSG00000132681			Atp1a4 (MGI:1351335)
chr1	160190494	160201885	1q21	1q23.2	114250	CASQ1, VMCQA	Calsequestrin, fast-twitch, skeletal muscle-1	CASQ1	844	ENSG00000143318		Myopathy, vacuolar, with CASQ1 aggregates, 616231 (3), Autosomal dominant	Casq1 (MGI:1309468)
chr1	160205318	160215375	1q21.1	1q23.2	603434	PEA15, HMAT1, PED	Phosphoprotein enriched in astrocytes, 15kD	PEA15	8682	ENSG00000162734			Pea15a (MGI:104799)
chr1	160215714	160262559	1q23.2	1q23.2	615820	DCAF8, WDR42A, GAN2	DDB1- and CUL4-associated factor 8	DCAF8	50717	ENSG00000132716	mutation identified in 1 GAN2 family	?Giant axonal neuropathy 2, autosomal dominant, 610100 (3), Autosomal dominant	Dcaf8 (MGI:91860)
chr1	160276808	160285150	1q22	1q23.2	600279	PEX19, PXF, HK33, D1S2223E, PBD12A	Peroxisome biogenesis factor 19 (peroxisomal farnesylated protein)	PEX19	5824	ENSG00000162735		Peroxisome biogenesis disorder 12A (Zellweger), 614886 (3), Autosomal recessive	Pex19 (MGI:1334458)
chr1	160288586	160343563	1q23-q25	1q23.2	601924	COPA, AILJK	Coatomer protein complex, subunit alpha	COPA	1314	ENSG00000122218		{Autoimmune interstitial lung, joint, and kidney disease}, 616414 (3), Autosomal dominant	Copa (MGI:1334462)
chr1	160343272	160358951	1q22-q23	1q23.2	605254	NCSTN	Nicastrin	NCSTN	23385	ENSG00000162736		Acne inversa, familial, 1, 142690 (3), Autosomal dominant	Ncstn (MGI:1891700)
chr1	160367070	160372847	1q22	1q23.2	162360	NHLH1, HEN1	Nescient helix loop helix 1	NHLH1	4807	ENSG00000171786	closely linked to Sap in mouse		Nhlh1 (MGI:98481)
chr1	160400573	160428677	1q21-q23	1q23.2	600533	VANGL2, LTAP	Vang-like 2 (loop-tail, mouse, homolog of)	VANGL2	57216	ENSG00000162738		Neural tube defects, 182940 (3), Autosomal dominant	Vangl2 (MGI:2135272)
chr1	160485029	160523262	1q23.1	1q23.2-q23.3	606446	SLAMF6, NTBA	SLAM family, member 6	SLAMF6	114836	ENSG00000162739			Slamf6 (MGI:1353620)
chr1	160500000	165500000	1q23.3		610141	QTV	QT interval, variation in		100379215		associated with rs12143842	[QT interval, variation in], 610141 (2)	
chr1	160541093	160579515	1q23.3	1q23.3	604513	CD84, SLAMF5	CD84 antigen	CD84	8832	ENSG00000066294			Cd84 (MGI:1336885)
chr1	160608099	160647310	1q22-q23	1q23.3	603492	SLAMF1, SLAM, CDW150, CD150	SLAM family, member 1	SLAMF1	6504	ENSG00000117090			Slamf1 (MGI:1351314)
chr1	160678745	160711850	1q21.3-q22	1q23.3	109530	CD48, BCM1, BLAST1	CD48 antigen (B-cell membrane protein)	CD48	962	ENSG00000117091			Cd48 (MGI:88339)
chr1	160739056	160754820	1q23-q24	1q23.3	606625	SLAMF7, CRACC, CS1	SLAM family, member 7	SLAMF7	57823	ENSG00000026751			Slamf7 (MGI:1922595)
chr1	160796073	160828255	1q21.3-q22	1q23.3	600684	LY9	T-lymphocyte surface antigen Ly-9	LY9	4063	ENSG00000122224	within 410kb of CD48		Ly9 (MGI:96885)
chr1	160830159	160862901	1q22	1q23.3	605554	CD244, NAIL, NKR2B4, SLAMF4	CD244 antigen	CD244	51744	ENSG00000122223		{Rheumatoid arthritis, susceptibility to}, 180300 (3)	Cd244 (MGI:109294)
chr1	160876539	160885169	1q21.3-q22	1q23.3	609873	ITLN1, INTL, LFR, HL1	Intelectin 1	ITLN1	55600	ENSG00000179914			Itln1 (MGI:1333831)
chr1	160945019	160957377	1q21.3-q22	1q23.3	609874	ITLN2, HL2	Intelectin 2	ITLN2	142683	ENSG00000158764			
chr1	160995205	161021342	1q21.2-q21.3	1q23.3	605721	F11R, JAM1	F11 receptor (junctional adhesion molecule 1)	F11R	50848	ENSG00000158769			F11r (MGI:1321398)
chr1	161037630	161038983	1q23.3	1q23.3	616041	TSTD1, KAT	Thiosulfate sulfurtransferase (rhodanese)-like domain-containing protein 1	TSTD1	100131187	ENSG00000215845			Tstd1 (MGI:3648482)
chr1	161039250	161045978	1q22-q23	1q23.3	191523	USF1, HYPLIP1	Upstream transcription factor 1	USF1	7391	ENSG00000158773		{Hyperlipidemia, familial combined, susceptibility to}, 602491 (3)	Usf1 (MGI:99542)
chr1	161046941	161069970	1q23.3	1q23.3	614264	ARHGAP30	RHO GTPase-activating protein 30	ARHGAP30	257106	ENSG00000186517			Arhgap30 (MGI:2684948)
chr1	161070990	161089594	1q23.3	1q23.3	609607	NECTIN 4, PVRL4, PRR4, EDSS1	Nectin 4	NECTIN4	81607	ENSG00000143217		Ectodermal dysplasia-syndactyly syndrome 1, 613573 (3), Autosomal recessive	Nectin4 (MGI:1918990)
chr1	161098360	161100347	1q23.3	1q23.3	617375	KLHDC9, KARCA1	Kelch domain-containing protein 9	KLHDC9	126823	ENSG00000162755			Klhdc9 (MGI:1916124)
chr1	161100555	161118075	1q23.3	1q23.3	613466	PFDN2	Prefoldin 2	PFDN2	5202	ENSG00000143256			Pfdn2 (MGI:1276111)
chr1	161118071	161125445	1q21-q22	1q23.3	604618	NIT1	Nitrilase 1	NIT1	4817	ENSG00000158793			Nit1 (MGI:1350916)
chr1	161120976	161132782	1q23.3	1q23.3	606841	DEDD, DEFT	Death effector domain-containing protein	DEDD	9191	ENSG00000158796			Dedd (MGI:1333874)
chr1	161132702	161158855	1q23.3	1q23.3	610554	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	UFC1	51506	ENSG00000143222			Ufc1 (MGI:1913405)
chr1	161159463	161165751	1q22	1q23.3	604729	USP21, USP23	Ubiquitin-specific protease 21	USP21	27005	ENSG00000143258			Usp21 (MGI:1353665)
chr1	161165823	161178276	1q22	1q23.3	600923	PPOX	Protoporphyrinogen oxidase	PPOX	5498	ENSG00000143224		Porphyria variegata, 176200 (3), Autosomal dominant	Ppox (MGI:104968)
chr1	161171309	161185006	1q23	1q23.3	604014	B4GALT3	Beta-1,4-galactosyltransferase 3	B4GALT3	8703	ENSG00000158850			B4galt3 (MGI:1928767)
chr1	161189728	161202338	1q21-q23	1q23.3	603876	ADAMTS4	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 4 (aggrecanase 1)	ADAMTS4	9507	ENSG00000158859			Adamts4 (MGI:1339949)
chr1	161199314	161214394	1q23	1q23.3	602985	NDUFS2	NADH dehydrogenase (ubiquinone) Fe-S protein 2, 49kD	NDUFS2	4720	ENSG00000158864		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufs2 (MGI:2385112)
chr1	161215296	161219247	1q23	1q23.3	147139	FCER1G	Fc fragment of IgE, high affinity I, receptor for, gamma polypeptide	FCER1G	2207	ENSG00000158869	probably on 1q close to CD32		Fcer1g (MGI:95496)
chr1	161222292	161223627	1q21-q23	1q23.3	107670	APOA2	Apolipoprotein A-II	APOA2	336	ENSG00000158874		Apolipoprotein A-II deficiency (3); {Hypercholesterolemia, familial, modifier of}, 143890 (3), Autosomal dominant	Apoa2 (MGI:88050)
chr1	161229665	161238622	1q23.1	1q23.3	603881	NR1I3, CAR, MB67	Nuclear receptor subfamily 1, group I, member 3	NR1I3	9970	ENSG00000143257			Nr1i3 (MGI:1346307)
chr1	161303593	161309971	1q22	1q23.3	159440	MPZ, CMT1B, CMTDID, CHM, DSS	Myelin protein zero	MPZ	4359	ENSG00000158887		Charcot-Marie-Tooth disease, dominant intermediate D, 607791 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 1B, 118200 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 2I, 607677 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 2J, 607736 (3), Autosomal dominant; Dejerine-Sottas disease, 145900 (3), Autosomal recessive, Autosomal dominant; Neuropathy, congenital hypomyelinating, 605253 (3), Autosomal recessive, Autosomal dominant; Roussy-Levy syndrome, 180800 (3), Autosomal dominant	Mpz (MGI:103177)
chr1	161314375	161364750	1q21	1q23.3	602413	SDHC, PGL3	Succinate dehydrogenase complex, subunit C, integral membrane protein, 15kD	SDHC	6391	ENSG00000143252		Gastrointestinal stromal tumor, 606764 (3), Autosomal dominant, Isolated cases; Paraganglioma and gastric stromal sarcoma, 606864 (3); Paragangliomas 3, 605373 (3), Autosomal dominant	Sdhc (MGI:1913302)
chr1	161364730	161367882	1q23.3	1q23.3	616119	CFAP126, FLTP	Cilia- and flagella-associated protein 126	CFAP126	257177	ENSG00000188931			Cfap126 (MGI:1922722)
chr1	161505414	161524047	1q21-q23	1q23.3	146790	FCGR2A, IGFR2, CD32	Fc fragment of IgG, low affinity IIa, receptor for (CD32)	FCGR2A	2212	ENSG00000143226	FCG2 and FCG3 within 250kb	{Lupus nephritis, susceptibility to}, 152700 (3), Autosomal dominant; {Malaria, severe, susceptibility to}, 611162 (3); {Pseudomonas aeruginosa, susceptibility to chronic infection by, in cystic fibrosis}, 219700 (3), Autosomal recessive	Fcgr3 (MGI:95500)
chr1	161524539	161526896	1q	1q23.3	140555	HSPA6	Heat-shock 70kD protein-6 (HSP70B')	HSPA6	3310	ENSG00000173110			
chr1	161541758	161550736	1q23	1q23.3	146740	FCGR3A, CD16, IGFR3, IMD20	Fc fragment of IgG, low affinity III, receptor for (CD16)	FCGR3A	2214	ENSG00000203747	FCGR2A and FCGR3A within 250kb antigen	Immunodeficiency 20, 615707 (3), Autosomal recessive	Fcgr4 (MGI:2179523)
chr1	161581338	161601219	1q23	1q23.3	612169	FCGR2C, CD32C	Fc fragment of IgG, low affinity IIc, receptor for	FCGR2C	9103	ENSG00000143226		Thrombocytopenic purpura, autoimmune, 188030 (1), Autosomal dominant	
chr1	161606058	161608550	1q	1q23.3	140556	HSPA7	Heat-shock 70kD protein-7 (HSP70B)	HSPA7	3311				
chr1	161623195	161631962	1q23	1q23.3	610665	FCGR3B	Fc fragment of IgG, low affinity IIIb, receptor for	FCGR3B	2215	ENSG00000162747		Neutropenia, alloimmune neonatal (3)	Fcgr4 (MGI:2179523)
chr1	161647242	161678653	1q22	1q23.3	604590	FCGR2B, CD32	Fc fragment of IgG, low affinity IIb, receptor for	FCGR2B	2213	ENSG00000072694		{Malaria, resistance to}, 611162 (3); {Systemic lupus erythematosus, susceptibility to}, 152700 (3), Autosomal dominant	Fcgr2b (MGI:95499)
chr1	161706971	161714351	1q23	1q23.3	606891	FREB	Fc receptor homolog expressed in B cells	FCRLA	84824	ENSG00000132185			Fcrla (MGI:2138647)
chr1	161721543	161728142	1q23.3	1q23.3	609251	FCRLB, FCRL2, FREB2, FCRY	Fc receptor-like protein B	FCRLB	127943	ENSG00000162746			Fcrlb (MGI:3576487)
chr1	161749767	161757163	1q21-q22	1q23.3	604835	DUSP1, YVH1	Dual-specificity phosphatase 12	DUSP12	11266	ENSG00000081721			Dusp12 (MGI:1890614)
chr1	161766243	161964069	1q22-q23	1q23.3	605537	ATF6, ACHM7	Activating transcription factor-6	ATF6	22926	ENSG00000118217		Achromatopsia 7, 616517 (3), Autosomal recessive	Atf6 (MGI:1926157)
chr1	162069790	162370022	1q23.3	1q23.3	605551	NOS1AP, CAPON, KIAA0464	Nitric oxide synthase 1 (neuronal) adaptor protein	NOS1AP	9722	ENSG00000198929			
chr1	162373724	162376961	1q23.3	1q23.3	617257	SPATA46	Spermatogenesis-associated protein 46	SPATA46	284680	ENSG00000171722			Spata46 (MGI:1924175)
chr1	162395265	162412137	1q22	1q23.3	608510	SH2D1B, EAT2	SH2 domain-containing 1B	SH2D1B	117157	ENSG00000198574			Sh2d1b1 (MGI:1349420)
chr1	162497173	162529628	1q23.1	1q23.3	608849	KIS	Kinase-interacting stathmin	UHMK1	127933	ENSG00000152332			Uhmk1 (MGI:1341908)
chr1	162561439	162599842	1q23.3	1q23.3	602862	UAP1, SPAG2	ADP-N-acetylglucosamine pyrophosphorylase 1	UAP1	6675	ENSG00000117143			Uap1 (MGI:1334459)
chr1	162631264	162786572	1q12-qter	1q23.3	191311	DDR2, NTRKR3, TKT	Discoidin domain receptor family, member 2	DDR2	4921	ENSG00000162733		Spondylometaepiphyseal dysplasia, short limb-hand type, 271665 (3), Autosomal recessive	Ddr2 (MGI:1345277)
chr1	162790701	162812817	1q23.3	1q23.3	606756	HSD17B7	17-beta-hydroxysteroid dehydrogenase VII	HSD17B7	51478	ENSG00000132196			Hsd17b7 (MGI:1330808)
chr1	163068605	163076801	1q23.3	1q23.3	602516	RGS4	Regulator of G protein signaling 4	RGS4	5999	ENSG00000117152			Rgs4 (MGI:108409)
chr1	163142298	163321790	1q23	1q23.3	603276	RGS5	Regulator of G protein signaling-5	RGS5	8490	ENSG00000143248		[Blood pressure regulation QTL], 145500 (2), Multifactorial	Rgs5 (MGI:1098434)
chr1	163321932	163355763	1q23	1q23.3	611772	NUF2, NUF2R, CDCA1	NUF2, S. cerevisiae, homolog of	NUF2	83540	ENSG00000143228			Nuf2 (MGI:1914227)
chr1	164559359	164886046	1q23	1q23.3	176310	PBX1, CAKUHED	Pre-B cell leukemia transcription factor-1	PBX1	5087	ENSG00000185630	pseudogene PBXP1 on chr.3	Congenital anomalies of kidney and urinary tract syndrome with or without hearing loss, abnormal ears, or developmental delay, 617641 (3), Autosomal dominant	Pbx1 (MGI:97495)
chr1	165201866	165356714	1q22-q23	1q23.3	600298	LMX1A, LMX1	LIM homeo box transcription factor-1, alpha	LMX1A	4009	ENSG00000162761			Lmx1a (MGI:1888519)
chr1	165400921	165445354	1q22-q23	1q23.3	180247	RXRG	Retinoid X receptor, gamma	RXRG	6258	ENSG00000143171			Rxrg (MGI:98216)
chr1	165500000	173000000	1q24		605429	DFNM1	Deafness, nonsyndromic, modifier 1	DFNM1	54362			{Deafness, nonsyndromic, modifier 1}, 605429 (2)	
chr1	165544240	165563947	1q24.1	1q24.1	615218	LRRC52	Leucine-rich repeat-containing protein 52	LRRC52	440699	ENSG00000162763			Lrrc52 (MGI:1924118)
chr1	165630872	165656135	1q23	1q24.1	604564	MGST3	Glutatione S-transferase, microsomal, 3	MGST3	4259	ENSG00000143198			Mgst3 (MGI:1913697)
chr1	165662211	165698662	1q22-q23	1q24.1	602733	ALDH9A1, ALDH9, E3	Aldehyde dehydrogenase 9 family, member A1	ALDH9A1	223	ENSG00000143149			Aldh9a1 (MGI:1861622)
chr1	165724290	165768921	1q24.1	1q24.1	614123	TMCO1, CFSMR	Transmembrane and coiled-coil domains protein 1	TMCO1	54499	ENSG00000143183		Craniofacial dysmorphism, skeletal anomalies, and mental retardation syndrome, 213980 (3), Autosomal recessive	Tmco1 (MGI:1921173)
chr1	165827494	165911617	1q22-q23.2	1q24.1	609329	UCK2, TSA903	Uridine/cytidine kinase 2	UCK2	7371	ENSG00000143179			Uck2 (MGI:1931744)
chr1	166856509	166876416	1q24-q25	1q24.1	612763	TADA1L, STAF42	Transcriptional adaptor 1-like	TADA1	117143	ENSG00000152382			Tada1 (MGI:1196415)
chr1	166921120	167022213	1q24.1	1q24.1	611368	MAEL	Maelstrom, Drosophila, homolog of	MAEL	84944	ENSG00000143194			Mael (MGI:2138453)
chr1	167052835	167090630	1q24.1	1q24.1	602171	GPA33	Glycoprotein A33	GPA33	10223	ENSG00000143167			Gpa33 (MGI:1891703)
chr1	167220828	167427344	1q22-q23	1q24.2	164175	OTF1, OCT1	Octamer-binding transcription factor-1	POU2F1	5451	ENSG00000143190			Pou2f1 (MGI:101898)
chr1	167430639	167518609	1q22-q23	1q24.2	186780	CD247, CD3Z, TCRZ, IMD25	CD247 antigen	CD247	919	ENSG00000198821	mutation identified in one IMD25 patient	?Immunodeficiency 25, 610163 (3), Autosomal recessive	Cd247 (MGI:88334)
chr1	167630192	167708695	1q24	1q24.2	610579	RCSD1, CAPZIP	RCSD domain-containing protein 1	RCSD1	92241	ENSG00000198771			Rcsd1 (MGI:2676394)
chr1	167721949	167791918	1q24	1q24.2	604376	MPZL1, PZR	Myelin protein zero-like 1	MPZL1	9019	ENSG00000197965			Mpzl1 (MGI:1915731)
chr1	167809079	167916388	1q24	1q24.2	605205	ADCY10, SAC, HCA2	Adenylyl cyclase 10, soluble	ADCY10	55811	ENSG00000143199		{Hypercalciuria, absorptive, susceptibility to}, 143870 (3), Autosomal dominant	Adcy10 (MGI:2660854)
chr1	167916674	167937068	1q24.2	1q24.2	614737	BRP44, MPC2	Brain protein 44	MPC2	25874	ENSG00000143158			Mpc2 (MGI:1917706)
chr1	167936238	168075842	1q24.2	1q24.2	610494	DCAF6, IQWD1, NRIP	DDB1 and CUL4 associated factor 6	DCAF6	55827	ENSG00000143164			Dcaf6 (MGI:1921356)
chr1	168079541	168137666	1q24.2	1q24.2	612250	GPR161	G protein-coupled receptor 161	GPR161	23432	ENSG00000143147			Gpr161 (MGI:2685054)
chr1	168178844	168202113	1q23.2	1q24.2	611807	TIPRL, TIP41, TIP	TIP41-like protein	TIPRL	261726	ENSG00000143155			Tiprl (MGI:1915087)
chr1	168281039	168314425	1q23-q24	1q24.2	604614	TBX19	T-box 19	TBX19	9095	ENSG00000143178		Adrenocorticotropic hormone deficiency, 201400 (3), Autosomal recessive	Tbx19 (MGI:1891158)
chr1	168540764	168543996	1q23	1q24.2	604828	XCL2, SCYC2, SCM1B	Chemokine, C motif, ligand 2	XCL2	6846	ENSG00000143185			
chr1	168574127	168582076	1q23	1q24.2	600250	XCL1, SCYC1, SCM1, LTN, LPTN	Chemokine, C motif, ligand 1 (lymphotactin)	XCL1	6375	ENSG00000143184			Xcl1 (MGI:104593)
chr1	168695456	168729203	1q12-q23	1q24.2	125597	DPT	Dermatopontin	DPT	1805	ENSG00000143196			Dpt (MGI:1928392)
chr1	169106708	169132721	1q22-q25	1q24.2	182330	ATP1B1	ATPase, Na+K+ transporting, beta-1 polypeptide	ATP1B1	481	ENSG00000143153		[Blood pressure regulation QTL], 145500 (2), Multifactorial	Atp1b1 (MGI:88108)
chr1	169132529	169367962	1q24	1q24.2	613465	NME7, MN23H7	Nonmetastatic cells 7, protein expressed in	NME7	29922	ENSG00000143156			Nme7 (MGI:2449121)
chr1	169463908	169485969	1q23.3	1q24.2	603941	SLC19A2, THTR1, TRMA, THMD1	Solute carrier family 19 (thiamine transporter), member 2	SLC19A2	10560	ENSG00000117479		Thiamine-responsive megaloblastic anemia syndrome, 249270 (3), Autosomal recessive	Slc19a2 (MGI:1928761)
chr1	169511953	169586629	1q23	1q24.2	612309	F5, THPH2, RPRGL1	Coagulation factor V (proaccelerin, labile factor)	F5	2153	ENSG00000198734	Order: F5-GRMP-LYAM1-ELAM1 in 300kb segment	{Budd-Chiari syndrome}, 600880 (3), Autosomal recessive; Factor V deficiency, 227400 (3), Autosomal recessive; {Pregnancy loss, recurrent, susceptibility to, 1}, 614389 (3), Autosomal dominant; {Stroke, ischemic, susceptibility to}, 601367 (3), Multifactorial; Thrombophilia due to activated protein C resistance, 188055 (3), Autosomal dominant; {Thrombophilia, susceptibility to, due to factor V Leiden}, 188055 (3), Autosomal dominant	F5 (MGI:88382)
chr1	169588848	169630138	1q23-q25	1q24.2	173610	SELP, GRMP	Selectin P (granulocyte membrane protein, 140kD; antigen CD62)	SELP	6403	ENSG00000174175	in same 300kb segment as LYAM1, ELAM1		Selp (MGI:98280)
chr1	169690664	169711701	1q23-q25	1q24.2	153240	SELL, LYAM1, LAM1, LNHR	Selectin L (lymphocyte adhesion molecule 1)	SELL	6402	ENSG00000188404			Sell (MGI:98279)
chr1	169722639	169734078	1q23-q25	1q24.2	131210	SELE, ELAM1	Selectin E (endothelial leukocyte adhesion molecule-1)	SELE	6401	ENSG00000007908			Sele (MGI:98278)
chr1	169792523	169794975	1q24.2	1q24.2	615255	METTL18, C1orf156	Methyltransferase-like 18	METTL18	92342	ENSG00000171806			Mettl18 (MGI:1917212)
chr1	169853073	169894266	1q24.2	1q24.2	608192	SCYL3, PACE1	SCY1-like 3, S. cerevisiae, homolog of	SCYL3	57147	ENSG00000000457			Scyl3 (MGI:1921385)
chr1	169921325	170085202	1q24.2	1q24.2	601836	KIFAP3, SMAP	Kinesin-associated protein 3	KIFAP3	22920	ENSG00000075945			Kifap3 (MGI:107566)
chr1	170532121	170553833	1q24.2	1q24.2	607983	GORAB, SCYL1BP1, NTKLBP1, GO	Golgin, RAB6-interacting	GORAB	92344	ENSG00000120370		Geroderma osteodysplasticum, 231070 (3), Autosomal recessive	Gorab (MGI:2138271)
chr1	170662727	170739399	1q24	1q24.2	167420	PRRX1, PMX1, PHOX1, AGOTC	Paired-related homeobox gene 1	PRRX1	5396	ENSG00000116132		Agnathia-otocephaly complex, 202650 (3), Autosomal recessive, Autosomal dominant	Prrx1 (MGI:97712)
chr1	171090872	171117818	1q23-q25	1q24.3	136132	FMO3, TMAU	Flavin-containing monooxygenase 3	FMO3	2328	ENSG00000007933		Trimethylaminuria, 602079 (3), Autosomal recessive	Fmo3 (MGI:1100496)
chr1	171185207	171212682	1q23-q25	1q24.3	603955	FMO2	Flavin-containing monooxygenase 2, pulmonary	FMO2	2327	ENSG00000094963	probably cluster of FMO genes at 1q23-q25		Fmo2 (MGI:1916776)
chr1	171248470	171285977	1q23-q25	1q24.3	136130	FMO1	Flavin-containing monooxygenase 1, fetal liver	FMO1	2326	ENSG00000010932			Fmo1 (MGI:1310002)
chr1	171314130	171342083	1q23-q25	1q24.3	136131	FMO4	Flavin-containing monooxygenase 2, adult liver	FMO4	2329	ENSG00000076258			Fmo4 (MGI:2429497)
chr1	171485495	171593510	1q24.3	1q24.3	617373	PRRC2C, KIAA1096	Proline-rich coiled-coil protein 3C	PRRC2C	23215	ENSG00000117523			Prrc2c (MGI:1913754)
chr1	171635416	171652632	1q24.3-q25.2	1q24.3	601652	MYOC, TIGR, GLC1A, JOAG, GPOA	Myocilin (trabecular meshwork-induced glucocorticoid response protein)	MYOC	4653	ENSG00000034971		Glaucoma 1A, primary open angle, 137750 (3), Autosomal dominant	Myoc (MGI:1202864)
chr1	171700155	171742843	1q24-q25	1q24.3	606909	VAMP24	Vesicle-associated membrane protein 4	VAMP4	8674	ENSG00000117533			Vamp4 (MGI:1858730)
chr1	171841477	172418465	1q24.3	1q24.3	611445	DNM3, KIAA0820	Dynamin 3	DNM3	26052	ENSG00000197959			Dnm3 (MGI:1341299)
chr1	172138797	172138906	1q24.3	1q24.3	610721	MIR214, MIRN214	Micro RNA 214	MIR214	406996				
chr1	172138807	172138887	1q24.3	1q24.3	614722	MIR3120	Micro RNA 3120	MIR3120	100422882		in intron 13 of DNM3 in sense orientation		
chr1	172144534	172144643	1q24.3	1q24.3	610720	MIR199A2, MIRN199A2	Micro RNA 199A2	MIR199A2	406977				
chr1	172441456	172444089	1q23-q25	1q24.3	601730	PIGC, GPI2, GPIBD16, MRT62	Phosphatidylinositol glycan, class C	PIGC	5279	ENSG00000135845		Glycosylphosphatidylinositol biosynthesis defect 16, 617816 (3)	Pigc (MGI:1914542)
chr1	172659007	172666872	1q23	1q24.3	134638	FASLG, TNFSF6, APT1LG1, FASL, ALPS1B	Fas ligand (TNF superfamily, member 6)	FASLG	356	ENSG00000117560		Autoimmune lymphoproliferative syndrome, type IB, 601859 (3), Autosomal dominant; {Lung cancer, susceptibility to}, 211980 (3), Autosomal recessive	Fasl (MGI:99255)
chr1	173000000	185800000	1q25		611154	AD14	Alzheimer disease 14		100188754		max lod at D1S218	{Alzheimer disease-14}, 611154 (2)	
chr1	173000000	185800000	1q25		608526	PDON2	Periodontitis, aggressive, 2		406237		between D1S196 and D1S533	Periodontitis, aggressive, 2, 608526 (2)	
chr1	173000000	185800000	1q25		611013	RGSL2	Regulator of G protein signaling-like 2				related to AD linked to 1q25		
chr1	173041219	173050962	1q23	1q25.1	603898	TNFSF18, AITRL, GITRL	Tumor necrosis factor ligand superfamily, member 18	TNFSF18	8995	ENSG00000120337			Tnfsf18 (MGI:2673064)
chr1	173183728	173462207	1q25	1q25.1	603594	TNFSF4, GP34, OX4OL	Tumor necrosis factor ligand superfamily, member 4	TNFSF4	7292	ENSG00000117586		{Myocardial infarction, susceptibility to}, 608446 (3)	Tnfsf4 (MGI:104511)
chr1	173477346	173488806	1q25.1	1q25.1	602316	PRDX6	Peroxiredoxin 6	PRDX6	9588	ENSG00000117592			Prdx6 (MGI:894320)
chr1	173714911	173786825	1q25.1	1q25.1	617679	KLHL20, KLEIP, KLHLX	Kelch-like 20	KLHL20	27252	ENSG00000076321			Klhl20 (MGI:2444855)
chr1	173799549	173824638	1q25.1	1q25.1	611503	CENPL	Centromeric protein L	CENPL	91687	ENSG00000120334			Cenpl (MGI:1917704)
chr1	173824646	173858543	1q25.1	1q25.1	610956	DARS2, ASPRS. LBSL	Aspartyl-tRNA synthetase 2	DARS2	55157	ENSG00000117593		Leukoencephalopathy with brain stem and spinal cord involvement and lactate elevation, 611105 (3), Autosomal recessive	Dars2 (MGI:2442510)
chr1	173863898	173868881	1q23.3	1q25.1	608280	GAS5	Growth arrest-specific 5	GAS5	60674				
chr1	173903803	173917377	1q23-q25	1q25.1	107300	SERPINC1, AT3, AT3D, THPH7	Antithrombin III	SERPINC1	462	ENSG00000117601	~17cM distal to FY	Thrombophilia due to antithrombin III deficiency, 613118 (3), Autosomal recessive, Autosomal dominant	Serpinc1 (MGI:88095)
chr1	173931083	173993071	1q25.1	1q25.1	609424	RC3H1, KIAA2025	Roquin	RC3H1	149041	ENSG00000135870			Rc3h1 (MGI:2685397)
chr1	174448073	174449544	1q24	1q25.1	604106	GPR52	G protein-coupled receptor 52	GPR52	9293	ENSG00000203737			Gpr52 (MGI:3643278)
chr1	174999434	175012026	1q24-q25	1q25.1	606186	SIP	SIAH1-interacting protein	CACYBP	27101	ENSG00000116161			Cacybp (MGI:1270839)
chr1	175012957	175023454	1q23-q25	1q25.1	611978	MRPS14	Mitochondrial ribosomal protein S14	MRPS14	63931	ENSG00000120333			Mrps14 (MGI:1928141)
chr1	175067857	175148065	1q25.1	1q25.1	617472	TNN	Tenascin N	TNN	63923	ENSG00000120332			Tnn (MGI:2665790)
chr1	175156985	175193294	1q25.1	1q25.1	616696	KIAA0040	KIAA0040 gene	KIAA0040	9674	ENSG00000235750			4930523C07Rik (MGI:1914897)
chr1	175320780	175743701	1q24	1q25.1	601995	TNR	Tenascin R (restrictin, janusin)	TNR	7143	ENSG00000116147			Tnr (MGI:99516)
chr1	175944825	176209086	1q24.1	1q25.1-q25.2	608067	RFWD2, COP1	Ring finger- and WD repeat domain-containing protein 2	COP1	64326	ENSG00000143207	pseudogenes on chr. 3, 9, 18		Cop1 (MGI:1347046)
chr1	176100000	185800000	1q25.2-q25.3		615492	LINC-COX2	Long intergenic noncoding RNA COX2						
chr1	176855116	177164903	1q25	1q25.2	600904	ASTN1, ASTN	Astrotactin 1	ASTN1	460	ENSG00000152092			Astn1 (MGI:1098567)
chr1	177928787	177984302	1q25.2	1q25.2	612855	SEC16B, LZTR2, RGPR, SEC16S	Sec16, S. cerevisiae, homolog of, B	SEC16B	89866	ENSG00000120341			Sec16b (MGI:2148802)
chr1	178093728	178479513	1q25.2	1q25.2	606136	RASAL2, NGAP	Ras protein activator-like 2	RASAL2	9462	ENSG00000075391			Rasal2 (MGI:2443881)
chr1	178725146	178921841	1q25.2	1q25.2	617819	RALGPS2, FLJ10244	RAL guanine nucleotide exchange factor with PH domain and SH3 domain-binding motif 2	RALGPS2	55103	ENSG00000116191			Ralgps2 (MGI:1925505)
chr1	179025803	179076573	1q25	1q25.2	611063	FAM20B	Family with sequence similarity 20, member B	FAM20B	9917	ENSG00000116199			Fam20b (MGI:2443990)
chr1	179081976	179095995	1q25-q31	1q25.2	607555	TOR3A, ADIR	Torsin family 3, member A (ATP-dependent interferon-responsive protein)	TOR3A	64222	ENSG00000186283			Tor3a (MGI:1353652)
chr1	179099326	179229692	1q24-q25	1q25.2	164690	ABL2, ABLL, ARG	Abelson murine leukemia viral (v-abl) oncogene homolog 2 (arg, Abelson-related gene)	ABL2	27	ENSG00000143322	fused with ETV6 in AML	Leukemia, acute myeloid, with eosinophilia (1)	Abl2 (MGI:87860)
chr1	179293713	179358679	1q25	1q25.2	102642	SOAT1, STAT, ACAT	Sterol O-acyltransferase 1 (acyl-Coenzyme A: cholesterol acyltransferase 1)	SOAT1	6646	ENSG00000057252			Soat1 (MGI:104665)
chr1	179550538	179575986	1q25-q31	1q25.2	604766	PDCN, NPHS2, SRN1	Podocin	NPHS2	7827	ENSG00000116218	modifies phenotype of NPHS1 mutations to FSGS	Nephrotic syndrome, type 2, 600995 (3), Autosomal recessive	Nphs2 (MGI:2157018)
chr1	179591612	179691271	1q25.2	1q25.2	617748	TDRD5, TUDOR3	Tudor domain-containing protein 5	TDRD5	163589	ENSG00000162782			Tdrd5 (MGI:2684949)
chr1	179727762	179816197	1q24.3	1q25.2	611727	C1orf76, NDSP	Neuroblastoma-derived secretory protein	FAM163A	148753	ENSG00000143340			Fam163a (MGI:3618859)
chr1	179839966	179877805	1q24	1q25.2	614513	TOR1AIP2, LULL1	Torsin A-interacting protein 2	TOR1AIP2	163590	ENSG00000169905			Tor1aip2 (MGI:3582695)
chr1	179882041	179920076	1q24	1q25.2	614512	TOR1AIP1, LAP1, LAP1B, LGMD2Y	Torsin A-interacting protein 1	TOR1AIP1	26092	ENSG00000143337	mutation identified in 1 LGMD2Y family	?Muscular dystrophy, limb-girdle, type 2Y, 617072 (3), Autosomal recessive	Tor1aip1 (MGI:3582693)
chr1	179954772	180114879	1q25.2	1q25.2	617870	CEP350, CAP350, KIAA0480	Centrosomal protein 350	CEP350	9857	ENSG00000135837			Cep350 (MGI:1921331)
chr1	180154832	180198033	1q24	1q25.2	603120	QSOX1	Quiescin Q6 sulfhydryl oxidase 1	QSOX1	5768	ENSG00000116260			Qsox1 (MGI:1330818)
chr1	180228371	180278981	1q25	1q25.2	602146	LHX4, CPHD4	LIM homeo box gene 4	LHX4	89884	ENSG00000121454	fused to IGH in ALL	Pituitary hormone deficiency, combined, 4, 262700 (3), Autosomal dominant	Lhx4 (MGI:101776)
chr1	180269662	180502886	1q25.3-q25.3	1q25.2-q25.3	616352	ACBD6	Acyl-CoA-binding domain-containing protein 6	ACBD6	84320	ENSG00000230124			Acbd6 (MGI:1919732)
chr1	180434795	180436801	1q25.3	1q25.3	610030	VDAC4	Voltage-dependent anion channel 4	VDAC1P4	7418				
chr1	180632009	180890278	1q25.1	1q25.3	605237	XPR1, SYG1, IBGC6	Xenotropic and polytropic retrovirus receptor	XPR1	9213	ENSG00000143324		Basal ganglia calcification, idiopathic, 6, 616413 (3), Autosomal dominant	Xpr1 (MGI:97932)
chr1	180972711	181023120	1q25.3	1q25.3	603944	STX6	Syntaxin 6	STX6	10228	ENSG00000135823			Stx6 (MGI:1926235)
chr1	181033391	181061937	1q25.3	1q25.3	600764	MR1, HLALS	Major histocompatibility complex, class I-related	MR1	3140	ENSG00000153029			Mr1 (MGI:1195463)
chr1	181088501	181090842	1q25.3	1q25.3	607177	IER5	Immediate-early response gene 5	IER5	51278	ENSG00000162783			Ier5 (MGI:1337072)
chr1	181317711	181808083	1q25-q31	1q25.3	601013	CACNA1E, CACNL1A6	Calcium channel, voltage-dependent, alpha 1E subunit	CACNA1E	777	ENSG00000198216			Cacna1e (MGI:106217)
chr1	182378092	182392205	1q31	1q25.3	138290	GLUL, GLNS	Glutamate-ammonia ligase (glutamine synthase)	GLUL	2752	ENSG00000135821	pseudogene on chr.9	Glutamine deficiency, congenital, 610015 (3), Autosomal recessive	Glul (MGI:95739)
chr1	182447875	182560596	1q25	1q25.3	611012	RGSL1	Regulator of G protein signaling-like 1	RGSL1	353299	ENSG00000121446			Rgsl1 (MGI:2685048)
chr1	182573633	182589284	1q25	1q25.3	180435	RNASEL, RNS4, PRCA1, HPC1	Ribonuclease L (2',5'-oligoisoadenylate synthetase-dependent)	RNASEL	6041	ENSG00000135828		Prostate cancer 1, 601518 (3), Autosomal dominant	Rnasel (MGI:1098272)
chr1	182598622	182604412	1q25-q31	1q25.3	602514	RGS16	Regulator of G protein signaling-16	RGS16	6004	ENSG00000143333			Rgs16 (MGI:108407)
chr1	182789448	182830383	1q25	1q25.3	611412	NPL, C1orf13, C112	N-acetylneuraminate pyruvate lyase	NPL	80896	ENSG00000135838			Npl (MGI:1921341)
chr1	182839303	182887981	1q25	1q25.3	603115	DHX9, DDX9, NDHII	DEAH (Asp-Glu-Ala-His) box polypeptide 9	DHX9	1660	ENSG00000135829			Dhx9 (MGI:108177)
chr1	183023459	183145591	1q31	1q25.3	150290	LAMC1, LAMB2	Laminin, gamma-1 (formerly LAMB2)	LAMC1	3915	ENSG00000135862	at least 3 genes, ?linked		Lamc1 (MGI:99914)
chr1	183186038	183245126	1q25-q31	1q25.3	150292	LAMC2, LAMNB2, LAMB2T	Laminin, gamma-2 (nicein, 100kD; kalinin, 105kD; BM600, 100kD)	LAMC2	3918	ENSG00000058085		Epidermolysis bullosa, junctional, Herlitz type, 226700 (3), Autosomal recessive; Epidermolysis bullosa, junctional, non-Herlitz type, 226650 (3), Autosomal recessive	Lamc2 (MGI:99913)
chr1	183248236	183418498	1q25.3	1q25.3	608701	NMNAT2, PNAT2, KIAA0479	Nicotinamide nucleotide adenylyltransferase 2	NMNAT2	23057	ENSG00000157064			Nmnat2 (MGI:2444155)
chr1	183471992	183554192	1q25	1q25.3	610964	SMG7, EST1C, KIAA0250	SMG7, C. elegans, homolog of	SMG7	9887	ENSG00000116698			Smg7 (MGI:2682334)
chr1	183555561	183590920	1q25	1q25.3	608515	NCF2	Neutrophil cytosolic factor-2, 65kD	NCF2	4688	ENSG00000116701		Chronic granulomatous disease due to deficiency of NCF-2, 233710 (3), Autosomal recessive	Ncf2 (MGI:97284)
chr1	183626192	183635940	1q25.3	1q25.3	604227	ARPC5, ARC16	Actin-related protein 2/3 complex, subunit 5	ARPC5	10092	ENSG00000162704			Arpc5 (MGI:1915021)
chr1	183636046	183928550	1q25.3	1q25.3	605667	RGL1, RGL	Ral guanine nucleotide dissociation stimulator-like 1	RGL1	23179	ENSG00000143344			Rgl1 (MGI:107484)
chr1	183646274	183653312	1q25.3	1q25.3	609908	APOBEC4	Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 4	APOBEC4	403314	ENSG00000173627			Apobec4 (MGI:1918531)
chr1	184051650	184095845	1q25	1q25.3	608756	TSEN15, SEN15, C1orf19, PCH2F	tRNA splicing endonuclease 15, S. cerevisiae, homolog of	TSEN15	116461	ENSG00000198860		Pontocerebellar hypoplasia, type 2F, 617026 (3), Autosomal recessive	Tsen15 (MGI:1913887)
chr1	185045418	185102607	1q25.3	1q25.3	608985	RNF2, RING2, RING1B, HIPI3, DING, BAP1	RING finger protein 2	RNF2	6045	ENSG00000121481			Rnf2 (MGI:1101759)
chr1	185118084	185157097	1q25	1q25.3	611673	TRMT1L, C1orf25, TRM1L	tRNA methyltransferase 1-like	TRMT1L	81627	ENSG00000121486			Trmt1l (MGI:1916185)
chr1	185292366	185317328	1q25.3	1q25.3	609209	IVNS1ABP, NS1BP, ND1	Influenza virus NS1A protein-binding protein	IVNS1ABP	10625	ENSG00000116679			Ivns1abp (MGI:2152389)
chr1	185734524	186190952	1q24-q25	1q25.3-q31.1	608548	HMCN1, FBLN6, FIBL6, ARMD1	Hemicentin (fibulin 6)	HMCN1	83872	ENSG00000143341		{Macular degeneration, age-related, 1}, 603075 (3), Autosomal dominant	Hmcn1 (MGI:2685047)
chr1	185800000	198700000	1q31		120502	BOS2	Branchiootic syndrome 2		64585			Branchiootic syndrome 2, 120502 (2), Autosomal dominant	
chr1	185800000	198700000	1q31		612005	CELIAC7	Celiac disease, susceptibility to, 7		100301522		associated with rs2816316	{Celiac disease, susceptibility to, 7}, 612005 (2)	
chr1	185800000	198700000	1q31		607516	MGR6, FHM3	Migraine, several forms		317773			{Migraine with or without aura, susceptibility to, 6}, 607516 (2), Autosomal dominant; {Migraine, familial hemiplegic, 4}, 607516 (2), Autosomal dominant	
chr1	185800000	236400000	1q31-q42		145260	PHA2A, PHA2	Pseudohypoaldosteronism type IIA		7830			Pseudohypoaldosteronism, type IIA, 145260 (2), Autosomal dominant	
chr1	185800000	190800000	1q31.1		609454	PSNP2	Supranuclear palsy, progressive, 2		619408		between D1S238 and D1S2823	Supranuclear palsy, progressive, 2, 609454 (2), Autosomal dominant	
chr1	185800000	198700000	1q31		176780	PVOP1	Pelvic organ prolapse, susceptibility to, 1		100312952		associated with rs10911193	{Pelvic organ prolapse, susceptibility to, 1}, 176780 (2), Autosomal dominant	
chr1	186296272	186314561	1q24-q25	1q31.1	604283	PRG4, CACP, MSF, SZP, HAPO	Proteoglycan 4 (megakaryocyte stimulating factor; hemangiopoietin)	PRG4	10216	ENSG00000116690		Camptodactyly-arthropathy-coxa vara-pericarditis syndrome, 208250 (3), Autosomal recessive	
chr1	186311651	186375324	1q25	1q31.1	189940	TPR	Tumor potentiating region (translocated promoter region)	TPR	7175	ENSG00000047410	fused with MET in chemically induced tumor		Tpr (MGI:1922066)
chr1	186443565	186461107	1q25-q31.1	1q31.1	171490	PDC	Phosducin, pineal gland	PDC	5132	ENSG00000116703			Pdc (MGI:98090)
chr1	186671811	186680426	1q25.2-q25.3	1q31.1	600262	PTGS2	Prostaglandin-endoperoxide synthase 2 (prostaglandin G/H synthase and cyclooxygenase)	PTGS2	5743	ENSG00000073756			Ptgs2 (MGI:97798)
chr1	186680653	186681445	1q31.1	1q31.1	617650	PACERR, PTGS2AS1	PTGS2 antisense NFKB1 complex-mediated expression regulator RNA, noncoding	PACERR	103752588				
chr1	186828899	186988980	1q25	1q31.1	600522	PLA2G4A, PLA2G4	Phospholipase A2, group IVA, cytosolic	PLA2G4A	5321	ENSG00000116711		Phospholipase A2, group IV A, deficiency of (3)	Pla2g4a (MGI:1195256)
chr1	192316991	192367284	1q31.2	1q31.2	612407	RGS21	Regulator of G protein signaling 21	RGS21	431704	ENSG00000253148			Rgs21 (MGI:3645243)
chr1	192575726	192580028	1q31	1q31.2	600323	RGS1, IER1, IR20	Regulator of G-protein signaling 1	RGS1	5996	ENSG00000090104			Rgs1 (MGI:1354694)
chr1	192809038	192812276	1q31	1q31.2	600861	RGS2, G0S8	G0 to G1 switch regulatory 8, 24kD	RGS2	5997	ENSG00000116741			Rgs2 (MGI:1098271)
chr1	193012252	193060139	1q32	1q31.2	610667	UCHL5, UCH37	Ubiquitin carboxyl-terminal hydrolase L5	UCHL5	51377	ENSG00000116750			Uchl5 (MGI:1914848)
chr1	193059421	193091776	1q31	1q31.2	600063	TROVE2, RO60, SSA2	TROVE domain family, member 2	TROVE2	6738	ENSG00000116747			Trove2 (MGI:106652)
chr1	193096464	193106534	1q31.2-q31.3	1q31.2	606820	GLRX2, GRX2	Glutaredoxin 2	GLRX2	51022	ENSG00000023572			Glrx2 (MGI:1916617)
chr1	193121957	193254814	1q25-q31	1q31.2	607393	CDC73, HRPT2, C1orf28	Cell division cycle protein 73, S. cerevisiae, homolog of	CDC73	79577	ENSG00000134371		Hyperparathyroidism, familial primary, 145000 (3), Autosomal dominant; Hyperparathyroidism-jaw tumor syndrome, 145001 (3), Autosomal dominant; Parathyroid adenoma with cystic changes, 145001 (3), Autosomal dominant; Parathyroid carcinoma, 608266 (3)	Cdc73 (MGI:2384876)
chr1	193178729	193186612	1q31	1q31.2	603018	B3GALT2, GLCT2	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 2	B3GALT2	8707	ENSG00000162630			B3galt2 (MGI:1349461)
chr1	193800000	207100000	1q31.3-q32.1		614826	NYS7	Nystagmus 7, congenital, autosomal dominant		101055624		between D1S218 and D1S2655	Nystagmus 7, congenital, autosomal dominant, 614826 (2), Autosomal dominant	
chr1	196225778	196608575	1q31.3	1q31.3	610044	KCNT2, SLICK, EIEE57	Potassium channel, subfamily T, member 2	KCNT2	343450	ENSG00000162687	mutation identified in 1 EIEE57 patient	?Epileptic encephalopathy, early infantile, 57, 617771 (3), Autosomal dominant	Kcnt2 (MGI:3036273)
chr1	196651877	196747503	1q32	1q31.3	134370	CFH, HF1, HUS, ARMD4, AHUS1	Complement factor H	CFH	3075	ENSG00000000971		Basal laminar drusen, 126700 (3), Autosomal dominant; Complement factor H deficiency, 609814 (3), Autosomal recessive, Autosomal dominant; {Hemolytic uremic syndrome, atypical, susceptibility to, 1}, 235400 (3), Autosomal recessive, Autosomal dominant; {Macular degeneration, age-related, 4}, 610698 (3)	Cfh (MGI:88385)
chr1	196774799	196794072	1q31-q32.1	1q31.3	605336	CFHR3, FHR3, HLF4, CFHL3	Complement factor H-related 3	CFHR3	10878	ENSG00000116785		{Hemolytic uremic syndrome, atypical, susceptibility to}, 235400 (3), Autosomal recessive, Autosomal dominant; {Macular degeneration, age-related, reduced risk of}, 603075 (3), Autosomal dominant	
chr1	196819729	196832188	1q31-q32.1	1q31.3	134371	CFHR1, FHR1, HFL1, CFHL1	Complement factor H-related 1	CFHR1	3078	ENSG00000244414		{Hemolytic uremic syndrome, atypical, susceptibility to}, 235400 (3), Autosomal recessive, Autosomal dominant; {Macular degeneration, age-related, reduced risk of}, 603075 (3), Autosomal dominant	Cfhr1 (MGI:2138169)
chr1	196888013	196918910	1q31-q32.1	1q31.3	605337	CFHR4, FHR4, CFHL4	Complement factor H-related 4	CFHR4	10877	ENSG00000134365			
chr1	196943751	196959327	1q31-q32.1	1q31.3	600889	CFHR2, FHR2, HFL3, CFHL2	Complement factor H-related 2	CFHR2	3080	ENSG00000080910	in same 165kb YAC as F13B		
chr1	196975021	197009724	1q32	1q31.3	608593	CFHR5, CFHL5, FHR5, CFHR5D	Complement factor H-related 5	CFHR5	81494	ENSG00000134389		Nephropathy due to CFHR5 deficiency, 614809 (3), Autosomal dominant	
chr1	197038740	197067266	1q31-q32.1	1q31.3	134580	F13B	Coagulation factor XIII, B polypeptide	F13B	2165	ENSG00000143278		Factor XIIIB deficiency, 613235 (3), Autosomal recessive	F13b (MGI:88379)
chr1	197084126	197146693	1q31	1q31.3	605481	ASPM, MCPH5	Abnormal spindle-like, microcephaly-associated	ASPM	259266	ENSG00000066279		Microcephaly 5, primary, autosomal recessive, 608716 (3), Autosomal recessive	Aspm (MGI:1334448)
chr1	197201461	197478454	1q31-q32.1	1q31.3	604210	CRB1, RP12, LCA8	Crumbs, Drosophila, homolog of, 1	CRB1	23418	ENSG00000134376		Leber congenital amaurosis 8, 613835 (3); Pigmented paravenous chorioretinal atrophy, 172870 (3), Autosomal dominant; Retinitis pigmentosa-12, autosomal recessive, 600105 (3), Autosomal recessive	Crb1 (MGI:2136343)
chr1	197504747	197782137	1q31.3	1q31.3	613292	DENND1B, FAM31B, C1orf18	DENN/MADD domain-containing 1B	DENND1B	163486	ENSG00000213047			Dennd1b (MGI:2447812)
chr1	197912504	197935475	1q31-q32	1q31.3	606066	LHX9	LIM homeo box gene 9	LHX9	56956	ENSG00000143355			Lhx9 (MGI:1316721)
chr1	198156977	198322419	1q31.3	1q31.3	606848	NEK7	Never-in-mitosis gene A-related kinase 7	NEK7	140609	ENSG00000151414			Nek7 (MGI:1890645)
chr1	198638967	198757475	1q31-q32	1q31.3-q32.1	151460	PTPRC, CD45, LCA	Protein tyrosine phosphatase, receptor type, c polypeptide	PTPRC	5788	ENSG00000081237		{Hepatitis C virus, susceptibility to}, 609532 (3); Severe combined immunodeficiency, T cell-negative, B-cell/natural killer-cell positive, 608971 (3), Autosomal recessive	Ptprc (MGI:97810)
chr1	198700000	214400000	1q32		137950	GFND1	Glomerulopathy with fibronectin deposits 1		100689213		max lod at D1S2782	Glomerulopathy with fibronectin deposits 1, 137950 (2), Autosomal dominant	
chr1	198700000	236400000	1q32.1-q42		139280	GUK2	Guanylate kinase-2	GUK2	2988		genetic independence of GUK1 and GUK2 unproved		
chr1	198700000	207100000	1q32.1		612381	IBD23	Inflammatory bowel disease 23		100240733		associated with rs3024505	{Inflammatory bowel disease 23}, 612381 (2)	
chr1	198700000	214400000	1q32		613164	PARK16	Parkinson disease 16	PARK16	100359403		associated with rs823128	{Parkinson disease 16}, 613164 (2)	
chr1	198700000	214400000	1q32		140400	PFHB2	Progressive familial heart block, type II		105463127		between D1S70 and D1S505	Progressive familial heart block, type II, 140400 (2), Autosomal dominant	
chr1	198858872	198858981	1q31.3	1q32.1	612744	MIR181B1, MIRN181B1	Micro RNA 181B1	MIR181B1	406955				
chr1	198859043	198859152	1q31.3	1q32.1	612742	MIR181A1, MIR213, MIRN181A1	Micro RNA 181A1	MIR181A1	406995				
chr1	200027601	200177423	1q32.1	1q32.1	604453	NR5A2, FTF, HB1F	Nuclear receptor subfamily 5, group A, member 2 (fetoprotein transcription factor)	NR5A2	2494	ENSG00000116833			Nr5a2 (MGI:1346834)
chr1	200551496	200620790	1q31	1q32.1	611279	KIF14, KIAA0042, MKS12, MCPH20	Kinesin family member 14	KIF14	9928	ENSG00000118193	mutation identified in 1 MKS12 family	?Meckel syndrome 12, 616258 (3), Autosomal recessive; Microcephaly 20, primary, autosomal recessive, 617914 (3), Autosomal recessive	Kif14 (MGI:1098226)
chr1	200640806	200669997	1q32.1	1q32.1	615464	DDX59, OFD5	DEAD box polypeptide 59	DDX59	83479	ENSG00000118197		Orofaciodigital syndrome V, 174300 (3), Autosomal recessive	Ddx59 (MGI:1915247)
chr1	200738904	200860706	1q32.1	1q32.1	613775	CAMSAP1L, CAMSAP2, KIAA1078	Calmodulin-regulated spectrin-associated protein 1-like 1	CAMSAP2	23271	ENSG00000118200			Camsap2 (MGI:1922434)
chr1	200872954	200874177	1q32.1	1q32.1	602174	GPR25	G protein-coupled receptor-25	GPR25	2848	ENSG00000170128			Gpr25 (MGI:2686146)
chr1	200969385	201023699	1q31-q32	1q32.1	608322	KIF21B, KIAA0449	Kinesin family member 21B	KIF21B	23046	ENSG00000116852			Kif21b (MGI:109234)
chr1	201039508	201112565	1q32	1q32.1	114208	CACNA1S, CACNL1A3, CCHL1A3, TTPP1, HOKPP1	Calcium channel, voltage-dependent, L type, alpha 1S subunit	CACNA1S	779	ENSG00000081248	in mouse, mutation causes muscular dysgenesis	Hypokalemic periodic paralysis, type 1, 170400 (3), Autosomal dominant; {Malignant hyperthermia susceptibility 5}, 601887 (3), Autosomal dominant; {Thyrotoxic periodic paralysis, susceptibility to, 1}, 188580 (3), Isolated cases	Cacna1s (MGI:88294)
chr1	201134770	201171624	1q41	1q32.1	616877	TMEM9, TMEM9A, DERM4	Transmembrane protein 9	TMEM9	252839	ENSG00000116857			Tmem9 (MGI:1913491)
chr1	201190779	201228951	1q32.1	1q32.1	617309	IGFN1, EEF1A2BP1	Immunoglobulin-like and fibronectin type III domains-containing protein 1	IGFN1	91156	ENSG00000163395			Igfn1 (MGI:3045352)
chr1	201283451	201332992	1q32	1q32.1	601975	PKP1	Plakophilin-1	PKP1	5317	ENSG00000081277		Ectodermal dysplasia/skin fragility syndrome, 604536 (3)	Pkp1 (MGI:1328359)
chr1	201359007	201377827	1q32	1q32.1	191045	TNNT2, CMH2, CMD1D, RCM3, LVNC6	Troponin-T2, cardiac	TNNT2	7139	ENSG00000118194		Cardiomyopathy, dilated, 1D, 601494 (3), Autosomal dominant; Cardiomyopathy, familial restrictive, 3, 612422 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 2, 115195 (3), Autosomal dominant; Left ventricular noncompaction 6, 601494 (3), Autosomal dominant	Tnnt2 (MGI:104597)
chr1	201380837	201399540	1q25.1-q32.3	1q32.1	602314	LAD1	Ladinin	LAD1	3898	ENSG00000159166			Lad1 (MGI:109343)
chr1	201403766	201421745	1q31.3	1q32.1	191042	TNNI1	Troponin-I, skeletal, slow	TNNI1	7135	ENSG00000159173			Tnni1 (MGI:105073)
chr1	201464283	201469170	1q31	1q32.1	607054	PHLDA3, TIH1	Pleckstrin homology-like domain, family A, member 3	PHLDA3	23612	ENSG00000174307			Phlda3 (MGI:1351485)
chr1	201483529	201507258	1q32	1q32.1	123876	CSRP1, CSRP	Cysteine and glycine-rich protein-1	CSRP1	1465	ENSG00000159176			Csrp1 (MGI:88549)
chr1	201539126	201826973	1q31	1q32.1	611628	NAV1, POMFIL3, KIAA1151	Neuron navigator 1	NAV1	89796	ENSG00000134369			Nav1 (MGI:2183683)
chr1	201808610	201808701	1q32.1	1q32.1	617040	MIR1231	Micro RNA 1231	MIR1231	100302158				
chr1	201888668	201899507	1q32.1	1q32.1	617326	SHISA4, C1orf40, TMEM58	Shisa family, member 4	SHISA4	149345	ENSG00000198892			Shisa4 (MGI:1924802)
chr1	201896455	201946587	1q32	1q32.1	602715	LMOD1, SMLMOD, 1D	Leiomodin 1	LMOD1	25802	ENSG00000163431			Lmod1 (MGI:2135671)
chr1	201955490	201970660	1q32	1q32.1	605057	TIMM17A, TIM17A	Translocase of inner mitochondrial membrane 17, yeast, homolog of, A	TIMM17A	10440	ENSG00000134375			Timm17a (MGI:1343131)
chr1	201982637	202006146	1q32.1-q32.2	1q32.1	602675	RNPEP	Arginyl aminopeptidase (aminopeptidase B)	RNPEP	6051	ENSG00000176393			Rnpep (MGI:2384902)
chr1	202010561	202017187	1q32	1q32.1	602191	ELF3, ESX	E74-like factor 3 (ETS domain transcription factor, serine box, epithelial-specific)	ELF3	1999	ENSG00000163435			Elf3 (MGI:1101781)
chr1	202118668	202133587	1q32.1	1q32.1	617630	GPR37L1, ETBRLP2	G protein-coupled receptor 37-like 1	GPR37L1	9283	ENSG00000170075			Gpr37l1 (MGI:1928503)
chr1	202133403	202144742	1q32.1	1q32.1	616597	ARL8A, GIE2	ADP-ribosylation factor-like 8A	ARL8A	127829	ENSG00000143862			Arl8a (MGI:1915974)
chr1	202147011	202161587	1q32.1	1q32.1	176889	PTPN7	Protein tyrosine phosphatase, nonreceptor-type, 7	PTPN7	5778	ENSG00000143851			Ptpn7 (MGI:2156893)
chr1	202193989	202319760	1q32	1q32.1	606653	LGR6	Leucine-rich repeat-containing G protein-coupled receptor-6	LGR6	59352	ENSG00000133067			Lgr6 (MGI:2441805)
chr1	202331656	202341965	1q31	1q32.1	610538	UBE2T, HSPC150, FANCT	Ubiquitin-conjugating enzyme E2T	UBE2T	29089	ENSG00000077152		Fanconi anemia, complementation group T, 616435 (3), Autosomal recessive	Ube2t (MGI:1914446)
chr1	202348701	202588568	1q32.1	1q32.1	603768	PPP1R12B, MYPT2	Protein phosphatase 1, regulatory subunit 12B (myosin phosphatase target subunit 2)	PPP1R12B	4660	ENSG00000077157			
chr1	202590595	202710443	1q32.1	1q32.1	600104	SYT2, CMS7, MYSPC	Synaptotagmin-2	SYT2	127833	ENSG00000143858		Myasthenic syndrome, congenital, 7, presynaptic, 616040 (3), Autosomal dominant	Syt2 (MGI:99666)
chr1	202725184	202809469	1q32	1q32.1	605393	KDM5B, JARID1B, PUT1, PLU1, RBBP2H1A	Lysine-specific demethylase 5B	KDM5B	10765	ENSG00000117139			Kdm5b (MGI:1922855)
chr1	202878281	202889256	1q32-q41	1q32.1	603417	RABIF, RASGFR3, MSS4	Rab-interacting factor (Ras-specific guanine-releasing factor-3; mammalian suppressor of SEC4)	RABIF	5877	ENSG00000183155			Rabif (MGI:2138605)
chr1	202891095	202928643	1q32.1	1q32.1	614522	KLHL12, DKIR	Kelch-like 12	KLHL12	59349	ENSG00000117153			Klhl12 (MGI:2385619)
chr1	202940824	202958571	1q32.1	1q32.1	607945	ADIPOR1, CGI45	Adiponectin receptor 1	ADIPOR1	51094	ENSG00000159346			Adipor1 (MGI:1919924)
chr1	202961872	202967275	1q32	1q32.1	608341	CYB5BR1, NQO3A2, B5R.1	Cytochrome b5 reductase 1	CYB5R1	51706	ENSG00000159348			Cyb5r1 (MGI:1919267)
chr1	203026490	203078735	1q32.1	1q32.1	603145	PPFIA4	Protein-tyrosine phosphatase, receptor-type, F polypeptide-interacting protein alpha 4	PPFIA4	8497	ENSG00000143847			
chr1	203083128	203086037	1q31-q41	1q32.1	159980	MYOG, MYF4	Myogenic factor-4; myogenin	MYOG	4656	ENSG00000122180			Myog (MGI:97276)
chr1	203127704	203167404	1q32.1	1q32.1	102775	ADORA1, RDC7	Adenosine A1 receptor	ADORA1	134	ENSG00000163485			Adora1 (MGI:99401)
chr1	203167810	203175813	1q32.1	1q32.1	160795	MYBPH	Myosin-binding protein H	MYBPH	4608	ENSG00000133055			Mybph (MGI:1858196)
chr1	203178930	203186793	1q32.1	1q32.1	601525	CHI3L1, GP39, YKL40, ASRT7	Chitinase 3-like 1 (cartilage glycoprotein-39)	CHI3L1	1116	ENSG00000133048		{Asthma-related traits, susceptibility to, 7}, 611960 (3); {Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant	Chil1 (MGI:1340899)
chr1	203216078	203229731	1q31-q32	1q32.1	600031	CHIT, CHITD	Chitotriosidase	CHIT1	1118	ENSG00000133063		[Chitotriosidase deficiency], 614122 (3), Autosomal recessive	Chit1 (MGI:1919134)
chr1	203305535	203309601	1q32	1q32.1	601597	BTG2, PC3	B-cell translocation gene 2 (pheochromocytoma cell-3)	BTG2	7832	ENSG00000159388			Btg2 (MGI:108384)
chr1	203340620	203351428	1q32.1	1q32.1	600245	FMOD	Fibromodulin	FMOD	2331	ENSG00000122176			Fmod (MGI:1328364)
chr1	203475754	203491351	1q32	1q32.1	601914	PRELP	Proline arginine-rich end leucine-rich repeat protein	PRELP	5549	ENSG00000188783			Prelp (MGI:2151110)
chr1	203626786	203744080	1q25-q32	1q32.1	108732	ATP2B4, ATP2B2, PMCA4	ATPase, Ca++ transporting, plasma membrane, 4	ATP2B4	493	ENSG00000058668			Atp2b4 (MGI:88111)
chr1	203795536	203854127	1q32.1	1q32.1	613513	ZC3H11A, KIAA0663	Zinc finger CCCH domain-containing protein 11A	ZC3H11A	9877	ENSG00000257315			Zc3h11a (MGI:1917829)
chr1	203797522	203801073	1q32.1	1q32.1	613512	ZBED6	Zinc finger BED domain-containing protein 6	ZBED6	100381270	ENSG00000257315	in intron 1 of ZC3H11A		Zbed6 (MGI:3828086)
chr1	203861584	203871151	1q32	1q32.1	128260	SNRPE, HYPT11	Small nuclear ribonucleoprotein polypeptide E	SNRPE	6635	ENSG00000182004		Hypotrichosis 11, 615059 (3), Autosomal dominant	Snrpert (MGI:3650419)
chr1	204073095	204127742	1q32	1q32.1	604748	SOX13, ICA12	SRY-box 13	SOX13	9580	ENSG00000143842			Sox13 (MGI:98361)
chr1	204131060	204152181	1q32.1	1q32.1	609859	ETNK2, EKI2	Ethanolamine kinase 2	ETNK2	55224	ENSG00000143845			Etnk2 (MGI:2443760)
chr1	204154815	204166336	1q32	1q32.1	179820	REN, HNFJ2	Renin	REN	5972	ENSG00000143839	~24cM distal to AT3	[Hyperproreninemia] (3); Hyperuricemic nephropathy, familial juvenile 2, 613092 (3), Autosomal dominant; Renal tubular dysgenesis, 267430 (3), Autosomal recessive	Ren1 (MGI:97898)
chr1	204190340	204196490	1q32	1q32.1	603286	KISS1, HH13	KISS1 metastasis suppressor	KISS1	3814	ENSG00000170498	mutation identified in 1 HH13 family	?Hypogonadotropic hypogonadism 13 with or without anosmia, 614842 (3), Autosomal recessive	Kiss1 (MGI:2663985)
chr1	204218850	204378376	1q32.1	1q32.1	607771	PEPP3, KIAA0969	Phosphatidylinositol 3-phosphate-binding PH domain protein 3	PLEKHA6	22874	ENSG00000143850			
chr1	204398683	204412453	1q32.1	1q32.1	613257	PPP1R15B, CREP, MSSGM2	Protein phosphatase 1, regulatory subunit 15B	PPP1R15B	84919	ENSG00000158615		Microcephaly, short stature, and impaired glucose metabolism 2, 616817 (3), Autosomal recessive	Ppp1r15b (MGI:2444211)
chr1	204422629	204494814	1q32	1q32.1	602838	PIK3C2B	Phosphatidylinositol 3-kinase, class 2, beta polypeptide	PIK3C2B	5287	ENSG00000133056			Pik3c2b (MGI:2685045)
chr1	204516376	204558119	1q32	1q32.1	602704	MDM4	Mouse double minute 4, homolog of	MDM4	4194	ENSG00000198625			Mdm4 (MGI:107934)
chr1	204617169	204685835	1q32.1	1q32.1	605492	GAC1	Glioma amplification on chromosome 1	LRRN2	10446	ENSG00000170382			Lrrn2 (MGI:106037)
chr1	204828651	205022821	1q32.1	1q32.1	609145	NFASC, KIAA0756	Neurofascin	NFASC	23114	ENSG00000163531			Nfasc (MGI:104753)
chr1	205042936	205078271	1q32.1	1q32.1	190197	CNTN2, TAX, TAX1, FAME5	Contactin 2 (transiently-expressed axonal glycoprotein)	CNTN2	6900	ENSG00000184144	1 family identified with mutation	?Epilepsy, myoclonic, familial adult, 5, 615400 (3), Autosomal recessive	Cntn2 (MGI:104518)
chr1	205086141	205122021	1q32	1q32.1	600697	RBBP5, RBQ3	Retinoblastoma-binding protein-5	RBBP5	5929	ENSG00000117222			Rbbp5 (MGI:1918367)
chr1	205142496	205211598	1q32.1	1q32.1	612666	DSTYK, KIAA0472, RIP5, DUSTYPK, CAKUT1, SPG23	Dual serine/threonine and tyrosine protein kinase	DSTYK	25778	ENSG00000133059		Congenital anomalies of kidney and urinary tract 1, 610805 (3), Autosomal dominant; Spastic paraplegia 23, 270750 (3), Autosomal recessive	Dstyk (MGI:1925064)
chr1	205302058	205321790	1q32	1q32.1	608131	NUAK2, SNARK	NUAK family, SNF1-like kinase, 2	NUAK2	81788	ENSG00000163545			Nuak2 (MGI:1921387)
chr1	205336063	205357089	1q32.1	1q32.1	614503	KLHDC8A	Kelch domain-containing protein 8A	KLHDC8A	55220	ENSG00000162873			Klhdc8a (MGI:2442630)
chr1	205381377	205449955	1q32.1	1q32.1	610480	LEMD1	LEM domain-containing protein 1	LEMD1	93273	ENSG00000186007			
chr1	205434885	205456085	1q32.1	1q32.1	615480	BLACAT1, LINC00912	Bladder cancer-associated transcript 1, noncoding	BLACAT1	101669762				
chr1	205504555	205532792	1q31-q32	1q32.1	169190	CDK18, PCTK3	Cyclin-dependent kinase 18	CDK18	5129	ENSG00000117266			Cdk18 (MGI:97518)
chr1	205607942	205632871	1q32	1q32.1	600246	ELK4, SAP1	ELK4, ETS-domain protein (SRF accessory protein 1)	ELK4	2005	ENSG00000158711			Elk4 (MGI:102853)
chr1	205657852	205680501	1q32.1	1q32.1	605097	SLC45A3, PRST, PCANAP6, IPCA6	Solute carrier family 45, member 3 (prostein)	SLC45A3	85414	ENSG00000158715			Slc45a3 (MGI:1922082)
chr1	205712818	205750243	1q32.1	1q32.1	611912	NUCKS1, NUCKS	Nuclear casein kinase and cyclin-dependent kinase substrate 1	NUCKS1	64710	ENSG00000069275			Nucks1 (MGI:1934811)
chr1	205767985	205775486	1q32	1q32.1	603949	RAB7L1	RAB7-like 1	RAB29	8934	ENSG00000117280			Rab29 (MGI:2385107)
chr1	205789092	205813758	1q31-q32	1q32.1	610801	SLC41A1	Solute carrier family 41, member 1	SLC41A1	254428	ENSG00000133065			Slc41a1 (MGI:2444823)
chr1	205813810	205850147	1q32.1	1q32.1	617124	PM20D1	Peptidase M20 domain-containing protein 1	PM20D1	148811	ENSG00000162877			Pm20d1 (MGI:2442939)
chr1	205913047	205943471	1q32.1	1q32.1	608481	SLC26A9	Solute carrier family 26 (sulfate transporter), member 9	SLC26A9	115019	ENSG00000174502			Slc26a9 (MGI:2444594)
chr1	206009263	206023908	1q31	1q32.1	116890	CTSE	Cathepsin E	CTSE	1510	ENSG00000196188	closely linked to REN		Ctse (MGI:107361)
chr1	206052722	206102700	1q32.1	1q32.1	616088	C1orf186, RHEX	Chromosome 1 open reading frame 186	RHEX	440712	ENSG00000263961			
chr1	206106935	206117049	1q32	1q32.1	600264	AVPR1B, AVPR3	Arginine vasopressin receptor-1B	AVPR1B	553	ENSG00000198049			Avpr1b (MGI:1347010)
chr1	206186178	206205345	1q32	1q32.1	614710	FAM72A, LMPIP, UGENE	Family with sequence similarity 72, member A	FAM72A	729533	ENSG00000196550			Fam72a (MGI:1919669)
chr1	206203555	206464442	1q32.1	1q32.1	606524	SRGAP2, KIAA0456	Slit-robo GTPase-activating protein, rho, 2	SRGAP2	23380	ENSG00000266028			Srgap2 (MGI:109605)
chr1	206470242	206496889	1q32.1	1q32.1	605048	IKBKE	I-kappa-B kinase-epsilon	IKBKE	9641	ENSG00000263528			Ikbke (MGI:1929612)
chr1	206507529	206589283	1q32.1	1q32.1	607020	RASSF5, NORE1	Ras association (RalGDS/AF-6) domain family 5 (Nore1, mouse, homolog of)	RASSF5	83593	ENSG00000266094			Rassf5 (MGI:1926375)
chr1	206572483	206612550	1q32.1	1q32.1	613709	EIF2D, HCA56	Eukaryotic translation initiation factor 2D	EIF2D	1939	ENSG00000143486			Eif2d (MGI:109342)
chr1	206635535	206655157	1q32.2	1q32.1	603497	DYRK3	Dual-specificity tyrosine phosphorylation-regulated kinase 3	DYRK3	8444	ENSG00000143479			Dyrk3 (MGI:1330300)
chr1	206684911	206734284	1q32.1	1q32.1	602006	MAPKAPK2, MK2	Mitogen-activated protein kinase-activated protein kinase 2	MAPKAPK2	9261	ENSG00000162889			Mapkapk2 (MGI:109298)
chr1	206767602	206772493	1q31-q32	1q32.1	124092	IL10, CSIF, GVHDS	Interleukin-10	IL10	3586	ENSG00000136634		{Graft-versus-host disease, protection against}, 614395 (3); {HIV-1, susceptibility to}, 609423 (3); {Rheumatoid arthritis, progression of}, 180300 (3)	Il10 (MGI:96537)
chr1	206798869	206842980	1q32	1q32.1	605687	IL19	Interleukin 19	IL19	29949	ENSG00000142224			Il19 (MGI:1890472)
chr1	206865246	206869222	1q32	1q32.1	605619	IL20	Interleukin 20	IL20	50604	ENSG00000162891			Il20 (MGI:1890473)
chr1	206897403	206904138	1q32	1q32.1	604136	IL24, ST16, MDA7	Interleukin 24 (suppression of tumorigenicity 16)	IL24	11009	ENSG00000162892			Il24 (MGI:2135548)
chr1	206903281	206922032	1q32.2	1q32.1	606015	FAIM3, TOSO, FCMR	Fas apoptotic inhibitory molecule 3	FCMR	9214	ENSG00000162894			Fcmr (MGI:1916419)
chr1	206928521	206946465	1q31-q42	1q32.1	173880	PIGR	Polymeric immunoglobulin receptor	PIGR	5284	ENSG00000162896			Pigr (MGI:103080)
chr1	206957954	206970656	1q32.3	1q32.1	605484	FCAMR	Fc fragment of IgA and IgM, receptor for	FCAMR	83953	ENSG00000162897			Fcamr (MGI:1927803)
chr1	207018520	207032760	1q32.2	1q32.1	611680	SARG, C1orf116	Specifically androgen-regulated gene	C1orf116	79098	ENSG00000182795			AA986860 (MGI:2138143)
chr1	207043848	207052979	1q32.1	1q32.1	612023	YOD1, OTUD2, DUBA8	YOD1 OTU deubiquitinating enzyme 1, S. cerevisiae, homolog of	YOD1	55432	ENSG00000180667			Yod1 (MGI:2442596)
chr1	207053062	207081022	1q31	1q32.1	171835	PFKFB2	Fructose-2,6-bisphosphatase, cardiac isozyme	PFKFB2	5208	ENSG00000123836			Pfkfb2 (MGI:107815)
chr1	207088794	207099992	1q32	1q32.1	120831	C4BPB	Complement component 4-binding protein, beta polypeptide	C4BPB	725	ENSG00000123843			
chr1	207104231	207144971	1q32	1q32.2	120830	C4BPA	Complement component 4-binding protein, alpha polypeptide	C4BPA	722	ENSG00000123838	same RE fragment as C4BPB		
chr1	207321471	207360965	1q32	1q32.2	125240	CD55, DAF, CROM, CHAPLE	CD55 antigen (blood group Cromer)	CD55	1604	ENSG00000196352		[Blood group Cromer], 613793 (3), Autosomal recessive; Complement hyperactivation, angiopathic thrombosis, and protein-losing enteropathy, 226300 (3), Autosomal recessive	Cd55,Cd55b (MGI:104850,MGI:104849)
chr1	207454299	207489894	1q32	1q32.2	120650	CR2, C3DR, SLEB9, CVID7	Complement component (3d/Epstein-Barr virus) receptor-2	CR2	1380	ENSG00000117322		Immunodeficiency, common variable, 7, 614699 (3), Autosomal recessive; {Systemic lupus erythematosus, susceptibility to, 9}, 610927 (3)	Cr2 (MGI:88489)
chr1	207496127	207641764	1q32	1q32.2	120620	CR1, C3BR	Complement component (3b/4b) receptor-1	CR1	1378	ENSG00000203710		[Blood group, Knops system], 607486 (3); CR1 deficiency (1); {Malaria, severe, resistance to}, 611162 (3); {?SLE susceptibility} (1)	
chr1	207645112	207723690	1q32	1q32.2	605886	CR1L	Complement component receptor 1-like	CR1L	1379	ENSG00000197721			Cr1l (MGI:88513)
chr1	207752037	207795515	1q32	1q32.2	120920	MCP, CD46, AHUS2	Membrane cofactor protein (CD46, trophoblast-lymphocyte cross-reactive antigen)	CD46	4179	ENSG00000117335		{Hemolytic uremic syndrome, atypical, susceptibility to, 2}, 612922 (3), Autosomal recessive, Autosomal dominant	Cd46 (MGI:1203290)
chr1	207801851	207801938	1q32.2	1q32.2	610784	MIR29C, MIRN29C	Micro RNA 29C	MIR29C	407026				
chr1	207886537	207911337	1q32	1q32.2	142230	CD34	CD34 antigen	CD34	947	ENSG00000174059			Cd34 (MGI:88329)
chr1	208022241	208244319	1q32.2	1q32.2	601054	PLXNA2, OCT, PLXN2	Plexin A2 (OCT transmembrane protein)	PLXNA2	5362	ENSG00000076356			Plxna2 (MGI:107684)
chr1	209432132	209432241	1q32.2	1q32.2	613147	MIR205, MIRN205	Micro RNA 205	MIR205	406988				
chr1	209583699	209613938	1q32-q41	1q32.2	614994	CAMK1G, CLICK3	Calcium/calmodulin-dependent protein kinase IG	CAMK1G	57172	ENSG00000008118			Camk1g (MGI:2388073)
chr1	209614869	209652474	1q32	1q32.2	150310	LAMB3, AI1A	Laminin, beta-3 (nicein, 125kD; kalinin, 140kD; BM600, 125kD)	LAMB3	3914	ENSG00000196878		Amelogenesis imperfecta, type IA, 104530 (3), Autosomal dominant; Epidermolysis bullosa, junctional, Herlitz type, 226700 (3), Autosomal recessive; Epidermolysis bullosa, junctional, non-Herlitz type, 226650 (3), Autosomal recessive	Lamb3 (MGI:99915)
chr1	209675324	209676389	1q32-q41	1q32.2	614447	G0S2	G0/G1 switch gene 2	G0S2	50486	ENSG00000123689			G0s2 (MGI:1316737)
chr1	209686179	209734949	1q32-q41	1q32.2	600713	HSD11B1, HSD11, HSD11L, CORTRD2	Hydroxysteroid, 11-beta, dehydrogenase 1	HSD11B1	3290	ENSG00000117594	digenic triallelic mutations with H6PD	Cortisone reductase deficiency 2, 614662 (3), Autosomal dominant	Hsd11b1 (MGI:103562)
chr1	209756031	209782322	1q32.3-q41	1q32.2	608255	TRAF3IP3, T3JAM	TRAF3-interacting protein 3	TRAF3IP3	80342	ENSG00000009790			Traf3ip3 (MGI:2441706)
chr1	209785622	209806174	1q32-q41	1q32.2	607199	IRF6, VWS, LPS, PIT, PPS1, OFC6	Interferon regulatory factor 6	IRF6	3664	ENSG00000117595	OFC6 in enhancer 5' of IRF6	{Orofacial cleft 6}, 608864 (3), Isolated cases; Popliteal pterygium syndrome 1, 119500 (3), Autosomal dominant; van der Woude syndrome, 119300 (3), Autosomal dominant	Irf6 (MGI:1859211)
chr1	209938164	210171314	1q32.2	1q32.2	610949	SYT14, SCAR11	Synaptotagmin 14	SYT14	255928	ENSG00000143469		Spinocerebellar ataxia, autosomal recessive 11, 614229 (3), Autosomal recessive	Syt14 (MGI:2444490)
chr1	210327872	210676297	1q32	1q32.2	605743	HHAT, MART2, SKI1	Hedgehog acyltransferase	HHAT	55733	ENSG00000054392			Hhat (MGI:2444681)
chr1	210678313	211134114	1q32-q41	1q32.2	603305	KCNH1, EAG, TMBTS, ZLS1	Potassium voltage-gated channel, subfamily H, member 1 (ether-a-go-go, drosophila, homolog of)	KCNH1	3756	ENSG00000143473		Temple-Baraitser syndrome, 611816 (3), Autosomal dominant; Zimmermann-Laband syndrome 1, 135500 (3), Autosomal dominant	Kcnh1 (MGI:1341721)
chr1	211326593	211374945	1q32	1q32.3	602356	TRAF5	TNF receptor-associated factor 5	TRAF5	7188	ENSG00000082512			Traf5 (MGI:107548)
chr1	211476521	211492916	1q32.3	1q32.3	180040	RD3, LCA12, C1orf36	Retinal degeneration 3, mouse, homolog of	RD3	343035	ENSG00000198570		Leber congenital amaurosis 12, 610612 (3), Autosomal recessive	Rd3 (MGI:1921273)
chr1	211575038	211578756	1q32.3	1q32.3	609521	SLC30A1, ZNT1	Solute carrier family 30 (zinc transporter), member 1	SLC30A1	7779	ENSG00000170385			Slc30a1 (MGI:1345281)
chr1	211658255	211675629	1q32.2-q41	1q32.3	604043	NEK2, RP67	Never in mitosis gene a-related kinase 2	NEK2	4751	ENSG00000117650	pseudogenes on chr. 2, 14, and 22; mutation identified in 1 family	?Retinitis pigmentosa 67, 615565 (3), Autosomal recessive	Nek2 (MGI:109359)
chr1	211940327	212035659	1q32.3	1q32.3	611350	INTS7, INT7	Integrator complex subunit 7	INTS7	25896	ENSG00000143493			Ints7 (MGI:1924315)
chr1	212035552	212105005	1q32.1-q32.2	1q32.3	610617	DTL, RAMP, DCAF2, CDT2	Denticleless, Drosophila, homolog of	DTL	51514	ENSG00000143476			Dtl (MGI:1924093)
chr1	212285536	212361862	1q41	1q32.3	601643	PPP2R5A	Protein phosphatase-2, regulatory subunit B (B56), alpha isoform	PPP2R5A	5525	ENSG00000066027			Ppp2r5a (MGI:2388479)
chr1	212432886	212446378	1q32.3	1q32.3	611874	NENF, CIR2	Neuron-derived neurotrophic factor	NENF	29937	ENSG00000117691			Nenf (MGI:1913458)
chr1	212565333	212620776	1q32.3	1q32.3	603148	ATF3	Activating transcription factor 3	ATF3	467	ENSG00000162772			Atf3 (MGI:109384)
chr1	212686416	212699984	1p32.3	1q32.3	612470	BATF3	Basic leucine zipper transcription factor, ATF-like, 3	BATF3	55509	ENSG00000123685			Batf3 (MGI:1925491)
chr1	212726152	212798899	1q41	1q32.3	609174	NSL1, DC8, C1orf48	NSL1, MIS12 kinetochore complex component	NSL1	25936	ENSG00000117697			Nsl1 (MGI:2685830)
chr1	212856603	212858137	1q31	1q32.3	610864	LQK1	LQK1 protein	FLVCR1-DT	642946				
chr1	212858254	212899362	1q31.3	1q32.3	609144	FLVCR1, AXPC1, PCARP	Feline leukemia virus subgroup C receptor 1	FLVCR1	28982	ENSG00000162769		Ataxia, posterior column, with retinitis pigmentosa, 609033 (3), Autosomal recessive	Flvcr1 (MGI:2444881)
chr1	212935542	212992304	1q32.3	1q32.3	610471	VASH2	Vasohibin 2	VASH2	79805	ENSG00000143494			Vash2 (MGI:2444826)
chr1	213051232	213378752	1q32.3	1q32.3	617517	RPS6KC1, RPK118	Ribosomal protein S6 kinase C1	RPS6KC1	26750	ENSG00000136643			Rps6kc1 (MGI:2443419)
chr1	213924748	213926653	1q41	1q32.3	614635	LINC00538, YIYA	Long intergenic noncoding RNA 538	LINC00538	100861504				
chr1	213983238	214041509	1q32.2-q32.3	1q32.3	601546	PROX1	Prospero-related homeo box 1	PROX1	5629	ENSG00000117707			Prox1 (MGI:97772)
chr1	214281221	214337135	1q41	1q32.3	610663	SMYD2	SET and MYND domain-containing protein 2	SMYD2	56950	ENSG00000143499			Smyd2 (MGI:1915889)
chr1	214348695	214551680	1q32	1q32-q41	603155	PTPN14, PEZ, CATLPH	Protein tyrosine phosphatase, nonreceptor-type, 14	PTPN14	5784	ENSG00000152104	mutation identified in 1 CATLPH family	?Choanal atresia and lymphedema, 613611 (3), Autosomal recessive	Ptpn14 (MGI:102467)
chr1	214400000	236400000	1q41-q42		610836	AUTS11	Autism, susceptibility to, 11		100188820		associated with rs12740310, rs3737296, and rs12310279	{Autism susceptibility 11}, 610836 (2)	
chr1	214400000	236400000	1q41-q42		612530	DEL1q41q42, C1DELq41q42	Chromosome 1q41-q42 deletion syndrome				contiguous gene deletion of 1.7Mb	Chromosome 1q41-q42 deletion syndrome, 612530 (4), Isolated cases	
chr1	214400000	248956422	1q41-q44		615589	OTSC10	Otosclerosis 10	OTSC10	102723100			Otosclerosis 10, 615589 (2), Autosomal dominant	
chr1	214400000	223900000	1q41		600332	RMD1	Rippling muscle disease 1	RMD1	6022			Rippling muscle disease-1, 600332 (2), Autosomal dominant	
chr1	214603188	214664570	1q32-q41	1q41	600236	CENPF, CILD31, STROMS	Centromere autoantigen F, 400kD	CENPF	1063	ENSG00000117724		Stromme syndrome, 243605 (3), Autosomal recessive	Cenpf (MGI:1313302)
chr1	215002919	215237092	1q41	1q41	603219	KCNK2, TREK	Potassium channel, subfamily K, member 2	KCNK2	3776	ENSG00000082482			Kcnk2 (MGI:109366)
chr1	215567378	215621820	1q41	1q41	613272	KCTD3	Potassium channel tetramerization domain-containing protein 3	KCTD3	51133	ENSG00000136636			Kctd3 (MGI:2444629)
chr1	215622893	216423395	1q41	1q41	608400	USH2A, RP39	Usherin	USH2A	7399	ENSG00000042781		Retinitis pigmentosa 39, 613809 (3); Usher syndrome, type 2A, 276901 (3), Autosomal recessive	Ush2a (MGI:1341292)
chr1	216503245	217137754	1q41	1q41	602969	ESRRG	Estrogen-related receptor, gamma	ESRRG	2104	ENSG00000196482			Esrrg (MGI:1347056)
chr1	217426991	217631111	1q41	1q41	616836	GPATCH2, GPATC2	G-patch domain-containing protein 2	GPATCH2	55105	ENSG00000092978			Gpatch2 (MGI:1915019)
chr1	217631323	217868150	1q41	1q41	611032	SPATA17, MSRG11	Spermatogenesis-associated protein 17	SPATA17	128153	ENSG00000162814			Spata17 (MGI:1921967)
chr1	218285286	218337982	1q41	1q41	611193	RRP15	Ribosomal RNA-processing 15, S. cerevisiae, homolog of	RRP15	51018	ENSG00000067533			Rrp15 (MGI:1914473)
chr1	218345283	218444618	1q41	1q41	190220	TGFB2, LDS4	Transforming growth factor, beta-2	TGFB2	7042	ENSG00000092969		Loeys-Dietz syndrome 4, 614816 (3), Autosomal dominant	Tgfb2 (MGI:98726)
chr1	219173830	219445120	1q41	1q41	616548	LYPLAL1	Lysophospholipase-like 1	LYPLAL1	127018	ENSG00000143353			Lyplal1 (MGI:2385115)
chr1	219910394	219960103	1q41	1q41	611146	SLC30A10, ZNT10, HMNDYT1	Solute carrier family 30 (zinc transporter), member 10	SLC30A10	55532	ENSG00000196660		Hypermanganesemia with dystonia 1, 613280 (3), Autosomal recessive	Slc30a10 (MGI:2685058)
chr1	219968599	220046657	1q41-q42	1q41	138295	EPRS, PARS	Glutamyl-prolyl-tRNA synthetase	EPRS	2058	ENSG00000136628			Eprs (MGI:97838)
chr1	220057481	220089915	1q41	1q41	604053	BPNT1	3'(2'),5'-bisphosphate nucleotidase 1	BPNT1	10380	ENSG00000162813			Bpnt1 (MGI:1338800)
chr1	220094112	220148040	1q41	1q41	612801	IARS2, CAGSSS	Isoleucyl-tRNA synthetase 2	IARS2	55699	ENSG00000067704	mutation identified in 1 CAGSSS family	?Cataracts, growth hormone deficiency, sensory neuropathy, sensorineural hearing loss, and skeletal dysplasia, 616007 (3), Autosomal recessive	Iars2 (MGI:1919586)
chr1	220117852	220117961	1q41	1q41	610943	MIR215, MIRN215	Micro RNA 215	MIR215	406997				
chr1	220118156	220118240	1q41	1q41	610940	MIR194-1, MIRN194-1	Micro RNA 194-1	MIR194-1	406969				
chr1	220148267	220272500	1q41	1q41	609275	RAB3GAP2, RAB3GAP150, p150, KIAA0839, WARBM2	RAB3 GTPase-activating protein (noncatalytic) subunit 2	RAB3GAP2	25782	ENSG00000118873		Martsolf syndrome, 212720 (3), Autosomal recessive; Warburg micro syndrome 2, 614225 (3), Autosomal recessive	Rab3gap2 (MGI:1916043)
chr1	220528182	220664456	1q41	1q41	606511	MARK1, KIAA1477	MAP/microtubule affinity-regulating kinase 1	MARK1	4139	ENSG00000116141			Mark1 (MGI:2664902)
chr1	220747416	220784814	1q41	1q41	614127	MOSC2, MARC2	Molybdenum cofactor sulfurase C-terminal domain-containing protein 2	MARC2	54996	ENSG00000117791			Marc2 (MGI:1914497)
chr1	220786696	220814398	1q41	1q41	614126	MOSC1, MARC1	Molybdenum cofactor sulfurase C-terminal domain-containing protein 1	MARC1	64757	ENSG00000186205			Marc1 (MGI:1913362)
chr1	220879400	220885058	1q41-q42.1	1q41	142995	HLX1	H.20-like homeobox 1	HLX	3142	ENSG00000136630			Hlx (MGI:96109)
chr1	221701419	221742175	1q41	1q41	608867	DUSP10, MKP5	Dual-specificity phosphatase 10	DUSP10	11221	ENSG00000143507			Dusp10 (MGI:1927070)
chr1	222557901	222590095	1q42	1q41	604903	TAF1A, RAFI48, SL1	TATA box-binding protein-associated factor 1A	TAF1A	9015	ENSG00000143498			Taf1a (MGI:109578)
chr1	222618101	222668011	1q42	1q41	613455	MIA3, TANGO1, TANGO, KIAA0268	Melanoma inhibitory activity family, member 3	MIA3	375056	ENSG00000154305			Mia3 (MGI:2443183)
chr1	222668012	222712894	1q41	1q41	612375	AIDA	Axin interactor, dorsalization-associated	AIDA	64853	ENSG00000186063			Aida (MGI:1919737)
chr1	222814513	223005994	1q42	1q41	607502	DISPA	Dispatched, Drosophila, homolog of, A	DISP1	84976	ENSG00000154309			Disp1 (MGI:1916147)
chr1	223108400	223143281	1q41	1q41	603031	TLR5, TIL3, SLEB1, MELIOS	Toll-like receptor-5	TLR5	7100	ENSG00000187554		{Legionnaire disease, susceptibility to}, 608556 (3); {Melioidosis, susceptibility to}, 615557 (3); {Systemic lupus erythematosus, resistance to}, 601744 (3); {Systemic lupus erythematosus, susceptibility to, 1}, 601744 (3)	Tlr5 (MGI:1858171)
chr1	223220818	223365270	1q41	1q41	615827	SUSD4	Sushi domain-containing protein 4	SUSD4	55061	ENSG00000143502			Susd4 (MGI:2138351)
chr1	223701592	223776017	1q41-q42	1q41	114230	CAPN2	Calpain, large polypeptide L2	CAPN2	824	ENSG00000162909			Capn2 (MGI:88264)
chr1	223779892	223845971	1q42.1	1q41	602143	TP53BP2, ASPP2	Tumor protein p53-binding protein-2	TP53BP2	7159	ENSG00000143514			Trp53bp2 (MGI:2138319)
chr1	223900000	236400000	1q42		613058	BCC2	Basal cell carcinoma, susceptibility to, 2		100307119		associated with rs801114	{Basal cell carcinoma, susceptibility to, 2}, 613058 (2)	
chr1	223900000	236400000	1q42		606554	EA3	Episodic ataxia, type 3		780905		max lod at D1S235	Episodic ataxia, type 3, 606554 (2), Autosomal dominant	
chr1	223900000	236400000	1q42		143025	HRES1	HTLV-1 related endogenous sequence	HRES1	3272				
chr1	223900000	236400000	1q42		604801	MDC1B	Muscular dystrophy, congenital, 1B		53368			Muscular dystrophy, congenital, 1B, 604801 (2), Autosomal recessive	
chr1	223900000	236400000	1q42		170000	PEPC	Peptidase C	PEPC	5183		1q25, 1q32 = conflicting localizations		
chr1	223900000	230500000	1q42.11-q42.13		180420	RN5S1@	RNA, 5S cluster 1	RN5S1@	6025		25-30% at 1q31 (RN5S3@)		
chr1	224114086	224162046	1q42.12	1q42.11	609100	FBXO28, FBX28, KIAA0483	F-box only protein 28	FBXO28	23219	ENSG00000143756			Fbxo28 (MGI:1261890)
chr1	224183207	224193440	1q42.11	1q42.11	615843	DEGS1, DES1, MLD	Delta(4)-desaturase, sphingolipid, 1	DEGS1	8560	ENSG00000143753			Degs1 (MGI:1097711)
chr1	224227333	224330188	1q41-q42.2	1q42.11	602426	NVL	Nuclear valosin-containing protein-like	NVL	4931	ENSG00000143748			Nvl (MGI:1914709)
chr1	224356810	224379451	1q42.11	1q42.11	617483	CNIH4, CNIH2	Cornichon family AMPA receptor auxiliary protein 4	CNIH4	29097	ENSG00000143771			Cnih4 (MGI:1925828)
chr1	224385142	224434766	1q42.13	1q42.11-q42.12	617424	WDR26, SKDEAS	WD repeat-containing protein 26	WDR26	80232	ENSG00000162923		Skraban-Deardorff syndrome, 617616 (3), Autosomal dominant	Wdr26 (MGI:1923825)
chr1	224928421	225399293	1q42	1q42.12	603341	DNAH14, HL18	Dynein, axonemal, heavy chain 14	DNAH14	127602	ENSG00000185842			Dnah14 (MGI:2444525)
chr1	225401501	225428854	1q42.1	1q42.12	600024	LBR, PHA	Lamin B receptor	LBR	3930	ENSG00000143815		Greenberg skeletal dysplasia, 215140 (3), Autosomal recessive; Pelger-Huet anomaly, 169400 (3), Autosomal dominant; ?Reynolds syndrome, 613471 (3), Autosomal dominant	Lbr (MGI:2138281)
chr1	225486828	225660045	1q42.13	1q42.12	609061	ENAH, ENA, MENA, NDPP1	Enabled, Drosophila, homolog of	ENAH	55740	ENSG00000154380			Enah (MGI:108360)
chr1	225777812	225790465	1q42.12	1q42.12	600707	SRP9, ALURBP	Signal recognition particle, 9-kD	SRP9	6726	ENSG00000143742			Srp9 (MGI:1350930)
chr1	225810073	225845562	1q42.1	1q42.12	132810	EPHX1	Epoxide hydroxylase 1, microsomal xenobiotic	EPHX1	2052	ENSG00000143819		Hypercholanemia, familial, 607748 (3)	Ephx1 (MGI:95405)
chr1	225886281	225889145	1q42.1	1q42.12	603037	LEFTB, LEFTY1	Left-right determination, factor B	LEFTY1	10637	ENSG00000243709			Lefty1 (MGI:107405)
chr1	225919876	225924339	1q42.13	1q42.12	616406	PYCR2, HLD10	Pyrroline-5-carboxylate reductase 2	PYCR2	29920	ENSG00000143811		Leukodystrophy, hypomyelinating, 10, 616420 (3), Autosomal recessive	Pycr2 (MGI:1277956)
chr1	225936597	225941491	1q42.1	1q42.12	601877	EBAF, TGFB4, LEFTY2, LEFTA, LEFTYA	Transforming growth factor, beta-4 (endometrial bleeding-associated factor)	LEFTY2	7044	ENSG00000143768		Left-right axis malformations (3)	Lefty2 (MGI:2443573)
chr1	226062706	226072001	1q41	1q42.12	601128	H3F3A, H3F3	H3 histone, family 3A	H3F3A	3020	ENSG00000163041			H3f3b,H3f3a (MGI:1101768,MGI:1097686)
chr1	226144678	226186721	1q42.1	1q42.12	606809	ACBD3, GOCAP1, GOLPH1, GCP60	Acyl-Coenzyme A binding domain containing 3	ACBD3	64746	ENSG00000182827			Acbd3 (MGI:2181074)
chr1	226223617	226227054	1q42.1	1q42.12	609852	MIXL1, MIXL, MIX	MIX1 homeobox-like protein 1	MIXL1	83881	ENSG00000185155			Mixl1 (MGI:1351322)
chr1	226231148	226310081	1q42.12	1q42.12	609375	LIN9	Lin9, C. elegans, homolog of	LIN9	286826	ENSG00000183814			Lin9 (MGI:1919818)
chr1	226360690	226408099	1q42	1q42.12	173870	PARP1, ADPRT, PPOL, PARP	Poly(ADP-ribose) polymerase 1	PARP1	142	ENSG00000143799	?processed pseudogenes on chr.13 and 14		Parp1 (MGI:1340806)
chr1	226631689	226739295	1q41-q43	1q42.12	147522	ITPKB	Inositol 1,4,5-trisphosphate 3-kinase B	ITPKB	3707	ENSG00000143772			Itpkb (MGI:109235)
chr1	226870571	226903828	1q31-q42	1q42.13	600759	PSEN2, AD4, STM2, CMD1V	Presenilin 2	PSEN2	5664	ENSG00000143801		Alzheimer disease-4, 606889 (3), Autosomal dominant; Cardiomyopathy, dilated, 1V, 613697 (3), Autosomal dominant	Psen2 (MGI:109284)
chr1	226939338	226987544	1q42.2	1q42.13	606980	ADCK3, COQ8, CABC1, SCAR9, ARCA2, COQ10D4	AARF domain-containing kinase 3	COQ8A	56997	ENSG00000163050		Coenzyme Q10 deficiency, primary, 4, 612016 (3), Autosomal recessive	Coq8a (MGI:1914676)
chr1	226989864	227318501	1q41-q42	1q42.13	603412	CDC42BPA, PK428, MRCKA	CDC42-binding protein kinase alpha	CDC42BPA	8476	ENSG00000143776			Cdc42bpa (MGI:2441841)
chr1	227918655	227947929	1q42	1q42.13	602863	WNT14	Wingless-type MMTV integration site family, member 14	WNT9A	7483	ENSG00000143816			Wnt9a (MGI:2446084)
chr1	228007021	228067112	1q42	1q42.13	606359	WNT3A	Wingless-type MMTV integration site family, member 3A	WNT3A	89780	ENSG00000154342			Wnt3a (MGI:98956)
chr1	228082659	228099211	1q42	1q42.13	103180	ARF1	ADP-ribosylation factor-1	ARF1	375	ENSG00000143761			Arf1 (MGI:99431)
chr1	228106678	228111745	1q42.13	1q42.13	611859	MRPL55	Mitochondrial ribosomal protein L55	MRPL55	128308	ENSG00000162910			Mrpl55 (MGI:1914462)
chr1	228140083	228148954	1q32.1-q42	1q42.13	139270	GUK1	Guanylate kinase-1	GUK1	2987	ENSG00000143774			Guk1 (MGI:95871)
chr1	228149713	228159825	1q42.13	1q42.13	608803	GJC2, GJA12, CX47, PMLDAR, HLD2, SPG44, LMPH1C	Gap junction protein, gamma-2 (47kD)	GJC2	57165	ENSG00000198835		Leukodystrophy, hypomyelinating, 2, 608804 (3), Autosomal recessive; Lymphedema, hereditary, IC, 613480 (3), Autosomal dominant; Spastic paraplegia 44, autosomal recessive, 613206 (3), Autosomal recessive	Gjc2 (MGI:2153060)
chr1	228165807	228182256	1q42.13	1q42.13	615316	IBA57, C1orf69, MMDS3, SPG74	IBA57, S. cerevisiae, homolog of	IBA57	200205	ENSG00000181873	mutation identified in 1 MMDS3 family and 1 SPG74 family	?Multiple mitochondrial dysfunctions syndrome 3, 615330 (3), Autosomal recessive; ?Spastic paraplegia 74, autosomal recessive, 616451 (3), Autosomal recessive	Iba57 (MGI:3041174)
chr1	228393671	228406815	1q42.13	1q42.13	607868	TRIM11	Tripartite motif-containing protein 11	TRIM11	81559	ENSG00000154370			Trim11 (MGI:2137355)
chr1	228406876	228416881	1q42	1q42.13	606123	RNF16	RING finger protein-16	TRIM17	51127	ENSG00000162931			Trim17 (MGI:1861440)
chr1	228424844	228425324	1q42	1q42.13	602820	HIST3H3, H3FT, H3T	Histone 3, H3	HIST3H3	8290	ENSG00000168148			
chr1	228457363	228457858	1q42	1q42.13	615015	HIST3H2A	Histone gene cluster 3, H2A histone	HIST3H2A	92815	ENSG00000181218			Hist3h2a (MGI:2448458)
chr1	228458106	228458557	1q42	1q42.13	615046	HIST3H2BB, H2Bb	Histone gene cluster 3, H2B histone family, member B	HIST3H2BB	128312	ENSG00000196890			Hist3h2bb-ps (MGI:1922442)
chr1	228487366	228496187	1q42.13	1q42.13	613754	RNF186, RACO1	Ring finger protein 187	RNF187	149603	ENSG00000168159			Rnf187 (MGI:1914224)
chr1	228644646	228746668	1q42	1q42.13	606366	RHOU, WRCH1	Ras homolog gene family, member U	RHOU	58480	ENSG00000116574			Rhou (MGI:1916831)
chr1	229271061	229305893	1q42-q43	1q42.13	179511	RAB4A, RAB4	Ras-associated protein RAB4A	RAB4A	5867	ENSG00000168118			Rab4a (MGI:105069)
chr1	229321004	229343794	1q42.13	1q42.13	616762	CCSAP, CSAP, C1orf96	Centriole-, cilia-, and spindle-associated protein	CCSAP	126731	ENSG00000154429			Ccsap (MGI:1920670)
chr1	229431244	229434095	1q42.1	1q42.13	102610	ACTA1, ASMA, NEM3, CFTD1, SHPM	Actin, alpha-1, skeletal muscle	ACTA1	58	ENSG00000143632	mutation identified in 1 SHPM family	Myopathy, actin, congenital, with cores, 161800 (3), Autosomal recessive, Autosomal dominant; Myopathy, actin, congenital, with excess of thin myofilaments, 161800 (3), Autosomal recessive, Autosomal dominant; Myopathy, congenital, with fiber-type disproportion 1, 255310 (3), Autosomal recessive, Autosomal dominant; ?Myopathy, scapulohumeroperoneal, 616852 (3), Autosomal dominant; Nemaline myopathy 3, autosomal dominant or recessive, 161800 (3), Autosomal recessive, Autosomal dominant	Acta1 (MGI:87902)
chr1	229441290	229508341	1q42.13	1q42.13	607613	NUP133	Nucleoporin, 133kD	NUP133	55746	ENSG00000069248			Nup133 (MGI:2442620)
chr1	229516581	229558987	1q42	1q42.13	605454	ABCB10, MTABC2	ATP-binding cassette, subfamily B, member 10	ABCB10	23456	ENSG00000135776	pseudogene on 15q13-q14		Abcb10 (MGI:1860508)
chr1	230057788	230282129	1q41-q42	1q42.13	602274	GALNT2	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2	GALNT2	2590	ENSG00000143641			Galnt2 (MGI:894694)
chr1	230321645	230425927	1q42.13	1q42.13	616791	PGBD5	Piggybac transposable element-derived 5	PGBD5	79605	ENSG00000177614			Pgbd5 (MGI:2429955)
chr1	230500000	243500000	1q42.2-q43		602759	PCAP	Predisposing for prostate cancer	PCAP	7834			{Prostate cancer, susceptibility to}, 176807 (2), Autosomal dominant	
chr1	230500000	243500000	1q42.2-q43		119100	SHFL1, SHFLD	Split-hand/foot malformation with long bone deficiency 1		791121		between rs1124110 and rs535043	Split-hand/foot malformation with long bone deficiency 1, 119100 (2), Autosomal dominant	
chr1	230642455	230693984	1q42.2	1q42.2	606974	COG2, LDLC, CDG2Q	Component of oligomeric golgi complex 2	COG2	22796	ENSG00000135775	mutation identified in 1 CDG2Q patient	?Congenital disorder of glycosylation, type IIq, 617395 (3), Autosomal recessive	Cog2 (MGI:1923582)
chr1	230702522	230714589	1q42-q43	1q42.2	106150	AGT, SERPINA8	Angiotensinogen	AGT	183	ENSG00000135744		{Hypertension, essential, susceptibility to}, 145500 (3), Multifactorial; {Preeclampsia, susceptibility to} (3); Renal tubular dysgenesis, 267430 (3), Autosomal recessive	Agt (MGI:87963)
chr1	230747288	230803355	1q42	1q42.2	606401	CAPN9	Calpain 9	CAPN9	10753	ENSG00000135773			Capn9 (MGI:1920897)
chr1	230979048	231000732	1q42.2	1q42.2	611647	ARV1, EIEE38	ARV1, S. cerevisiae, homolog of	ARV1	64801	ENSG00000173409		Epileptic encephalopathy, early infantile, 38, 617020 (3), Autosomal recessive	Arv1 (MGI:1916115)
chr1	231162390	231221567	1q42	1q42.2	610584	TRIM67	Tripartite motif-containing protein 67	TRIM67	440730	ENSG00000119283			Trim67 (MGI:3045323)
chr1	231241172	231277972	1q42	1q42.2	602744	GNPAT, DHAPAT, RCDP2	Glyceronephosphate O-acyltransferase	GNPAT	8443	ENSG00000116906		Rhizomelic chondrodysplasia punctata, type 2, 222765 (3), Autosomal recessive	Gnpat (MGI:1343460)
chr1	231332730	231337871	1q42.2	1q42.2	615283	EXOC8, EXO84, SEC84	Exocyst complex component 8	EXOC8	149371	ENSG00000116903			Exoc8 (MGI:2142527)
chr1	231337935	231355028	1q42.2	1q42.2	616086	SPRTN, DVC1, C1orf124, RJALS	SprT-like N-terminal domain protein	SPRTN	83932	ENSG00000010072		Ruijs-Aalfs syndrome, 616200 (3), Autosomal recessive	Sprtn (MGI:2685351)
chr1	231363750	231425043	1q42-q43	1q42.2	606425	EGLN1, PHD2, HIFPH2, C1orf12, ZMYND6, SM20, ECYT3, HALAH	Egl9, C. elegans, homolog of, 1	EGLN1	54583	ENSG00000135766		Erythrocytosis, familial, 3, 609820 (3), Autosomal dominant; [Hemoglobin, high altitude adaptation], 609070 (3), Autosomal dominant	Egln1 (MGI:1932286)
chr1	231528652	231566523	1q41	1q42.2	602964	TSNAX, TRAX	Translin-associated factor X	TSNAX	7257	ENSG00000116918			Tsnax (MGI:1855672)
chr1	231626814	232041271	1q42.1	1q42.2	605210	DISC1, SCZD9	Disrupted in schizophrenia 1	DISC1	27185	ENSG00000162946		{Schizophrenia 9, susceptibility to}, 604906 (3)	Disc1 (MGI:2447658)
chr1	231814625	231818516	1q42.1	1q42.2	606271	DISC2	Disrupted in schizophrenia 2	DISC2	27184		noncoding antisense RAN	Schizophrenia, 181500 (2), Autosomal dominant	
chr1	232397964	232630490	1q42.2	1q42.2	611609	SIPA1L2, KIAA1389	SIPA1-like protein 2	SIPA1L2	57568	ENSG00000116991			Sipa1l2 (MGI:2676970)
chr1	232984108	233295729	1q42.2	1q42.2	617656	PCNX2, KIAA0435	Pecanex, Drosophila, homolog of, 2	PCNX2	80003	ENSG00000135749			Pcnx2 (MGI:2445010)
chr1	233327731	233385147	1q42	1q42.2	614793	MLK4, KIAA1804	Mixed-lineage kinase 4	MAP3K21	84451	ENSG00000143674			Map3k21 (MGI:2385307)
chr1	233614003	233672511	1q42-q43	1q42.2	601745	KCNK1, TWIK1	Potassium channel, subfamily K, member 1	KCNK1	3775	ENSG00000135750			Kcnk1 (MGI:109322)
chr1	234373436	234384048	1q42.2	1q42.2	614772	COA6, C1orf31, CEMCOX4	Cytochrome c oxidase assembly factor 6	COA6	388753	ENSG00000168275		Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 4, 616501 (3), Autosomal recessive	
chr1	234391312	234479173	1q42.3	1q42.2	605052	TARBP1, TRP185	TAR RNA-binding protein 1	TARBP1	6894	ENSG00000059588			Tarbp1 (MGI:4936930)
chr1	234604268	234609524	1q42.3	1q42.3	615332	IRF2BP2, CVID14	Interferon regulatory factor 2-binding protein 2	IRF2BP2	359948	ENSG00000168264	mutation identified in 1 CVID14 family	?Immunodeficiency, common variable, 14, 617765 (3), Autosomal dominant	Irf2bp2 (MGI:2443921)
chr1	235109340	235128940	1q42.3	1q42.3	601848	TOMM20, MAS20, KIAA0016	Translocase of outer mitochondrial membrane 20, S. cerevisiae, homolog of	TOMM20	9804	ENSG00000173726			Tomm20 (MGI:1915202)
chr1	235166894	235328223	1q42.1-q43	1q42.3	609696	ARID4B, SAP180, RBP1L1, RBBP1L1, BRCAA1	AT-rich interactive domain-containing protein 4B	ARID4B	51742	ENSG00000054267			Arid4b (MGI:2137512)
chr1	235328437	235344531	1q43	1q42.3	606982	GGPS1, GGPPS1	Geranylgeranyl diphosphate synthase 1	GGPS1	9453	ENSG00000152904			Ggps1 (MGI:1341724)
chr1	235367359	235448967	1q42-q43	1q42.3	604934	TBCE, KCS, KCS1, HRD, PEAMO	Tubulin-specific chaperone E	TBCE	6905	ENSG00000284770		Encephalopathy, progressive, with amyotrophy and optic atrophy, 617207 (3), Autosomal recessive; Hypoparathyroidism-retardation-dysmorphism syndrome, 241410 (3), Autosomal recessive; Kenny-Caffey syndrome, type 1, 244460 (3), Autosomal recessive	Tbce (MGI:1917680)
chr1	235440653	235504480	1q42.3	1q42.3	610194	B3GALNT2, MGC39558, MDDGA11	Beta-1,3-N-acetylgalactosaminyltransferase 2	B3GALNT2	148789	ENSG00000162885		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 11, 615181 (3), Autosomal recessive	B3galnt2 (MGI:2145517)
chr1	235547684	235650753	1q42.3	1q42.3	604388	GNG4	Guanine nucleotide-binding protein, gamma 4	GNG4	2786	ENSG00000168243			Gng4 (MGI:102703)
chr1	235661030	235883707	1q42.3	1q42.3	606897	LYST, CHS1	Lysosomal trafficking regulator	LYST	1130	ENSG00000143669		Chediak-Higashi syndrome, 214500 (3), Autosomal recessive	Lyst (MGI:107448)
chr1	235975829	236065180	1q43	1q42.3	131390	NID	Nidogen	NID1	4811	ENSG00000116962			Nid1 (MGI:97342)
chr1	236142528	236213534	1q42-q43	1q42.3	604658	TM7SF1	Transmembrane 7 superfamily, member 1	GPR137B	7107	ENSG00000077585			Gpr137b (MGI:1891463)
chr1	236213063	236282038	1q42.3	1q42.3	615437	ERO1LB	Endoplasmic reticulum oxidoreduction 1-like beta	ERO1B	56605	ENSG00000086619			Ero1lb (MGI:1914725)
chr1	236394379	236484707	1q42.2-q43	1q42-q43	606603	EDARADD, ED3, EDA3, ECTD11B, ECTD11A	EDAR-associated death domain	EDARADD	128178	ENSG00000186197		Ectodermal dysplasia 11A, hypohidrotic/hair/tooth type, autosomal dominant, 614940 (3), Autosomal dominant; Ectodermal dysplasia 11B, hypohidrotic/hair/tooth type, autosomal recessive, 614941 (3), Autosomal recessive	Edaradd (MGI:1931001)
chr1	236400000	248956422	1q43-q44		612433	DFNB45	Deafness, autosomal recessive 45	DFNB45	449483		between D1S547 and D1S2836	Deafness, autosomal recessive 45, 612433 (2), Autosomal recessive	
chr1	236518213	236552980	1q42-q43	1q43	606099	LGALS8, PCTA1	Lectin, galactoside-binding, soluble, 8	LGALS8	3964	ENSG00000116977			Lgals8 (MGI:1928481)
chr1	236686453	236764630	1q42-q43	1q43	102573	ACTN2, CMD1AA, CMH23	Actinin, alpha-2	ACTN2	88	ENSG00000077522		Cardiomyopathy, dilated, 1AA, with or without LVNC, 612158 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 23, with or without LVNC, 612158 (3), Autosomal dominant	Actn2 (MGI:109192)
chr1	236794303	236903980	1q43	1q43	156570	MTR, HMAG	5-methyltetrahydrofolate-homocysteine methyltransferase 1	MTR	4548	ENSG00000116984		Homocystinuria-megaloblastic anemia, cblG complementation type, 250940 (3), Autosomal recessive; {Neural tube defects, folate-sensitive, susceptibility to}, 601634 (3), Autosomal recessive	Mtr (MGI:894292)
chr1	237042207	237833987	1q42.1-q43	1q43	180902	RYR2, VTSIP, ARVD2, ARVC2	Ryanodine receptor-2 (cardiac)	RYR2	6262	ENSG00000198626		Arrhythmogenic right ventricular dysplasia 2, 600996 (3), Autosomal dominant; Ventricular tachycardia, catecholaminergic polymorphic, 1, 604772 (3), Autosomal dominant	Ryr2 (MGI:99685)
chr1	237882376	237890921	1q43	1q43	613514	ZP4, ZPB	Zona pellucida glycoprotein 4	ZP4	57829	ENSG00000116996			
chr1	239386564	239915449	1q41-q44	1q43	118494	CHRM3, PBS, EGBRS	Cholinergic receptor, muscarinic, 3	CHRM3	1131	ENSG00000133019	mutation identified in 1 PBS family	?Prune belly syndrome, 100100 (3), Autosomal recessive	Chrm3 (MGI:88398)
chr1	240091884	240475188	1q43	1q43	606373	FMN2, MRT47	Formin 2	FMN2	56776	ENSG00000155816		Mental retardation, autosomal recessive 47, 616193 (3), Autosomal recessive	Fmn2 (MGI:1859252)
chr1	240489572	240612371	1q43	1q43	608832	GREM2, PRDC, STHAG9	Gremlin 2 homolog, cystine knot superfamily	GREM2	64388	ENSG00000180875		Tooth agenesis, selective, 9, 617275 (3), Autosomal dominant	Grem2 (MGI:1344367)
chr1	240775192	241357273	1q43	1q43	602517	RGS7	Regulator of G protein signaling 7	RGS7	6000	ENSG00000182901			Rgs7 (MGI:1346089)
chr1	241497556	241519784	1q42.1	1q43	136850	FH, HLRCC, MCUL1, FMRD	Fumarate hydratase	FH	2271	ENSG00000091483		Fumarase deficiency, 606812 (3), Autosomal recessive; Leiomyomatosis and renal cell cancer, 150800 (3), Autosomal dominant	Fh1 (MGI:95530)
chr1	241531882	241595646	1q43	1q43	603538	KMO	Kynurenine 3-monooxygenase	KMO	8564	ENSG00000117009			Kmo (MGI:2138151)
chr1	241593149	241640398	1q43	1q43	606695	OPN3, ECPN	Opsin 3	OPN3	23596	ENSG00000054277			Opn3 (MGI:1338022)
chr1	241628863	241635929	1q43	1q43	118825	CHML, REP2	Choroideremia-like	CHML	1122	ENSG00000203668			Chml (MGI:101913)
chr1	241847966	241889938	1q42-q43	1q43	606063	EXO1, HEX1	Exonuclease 1, S. cerevisiae, homolog of	EXO1	9156	ENSG00000174371			Exo1 (MGI:1349427)
chr1	241957766	241959061	1q43	1q43	615687	BECN2, BECN1L1	Beclin 2	BECN2	441925	ENSG00000196289			
chr1	243124427	243255795	1q44	1q43	613023	CEP170, KIAA0470	Centrosomal protein, 170kD	CEP170	9859	ENSG00000143702			Cep170 (MGI:1918348)
chr1	243255417	243503682	1q43-q44	1q43-q44	613524	SDCCAG8, CCCAP, SLSN7, BBS16	Serologically defined colon cancer antigen 8	SDCCAG8	10806	ENSG00000054282		Bardet-Biedl syndrome 16, 615993 (3), Autosomal recessive; Senior-Loken syndrome 7, 613615 (3)	Sdccag8 (MGI:1924066)
chr1	243488232	243851078	1q44	1q43-q44	611223	AKT3, PKBG, MPPH2	v-Akt murine thymoma viral oncogene homolog 3	AKT3	10000	ENSG00000117020		Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 2, 615937 (3), Autosomal dominant	Akt3 (MGI:1345147)
chr1	244048938	244057475	1q44	1q44	608433	ZBTB18, ZNF238, RP58, MRD22	Zinc finger and BTB domain containing 18	ZBTB18	10472	ENSG00000179456		Mental retardation, autosomal dominant 22, 612337 (3), Autosomal dominant	Zbtb18 (MGI:1353609)
chr1	244408491	244452133	1cen-q12	1q44	103060	ADSS	Adenylosuccinate synthetase (Ade(-)H-complementing)	ADSS	159	ENSG00000035687			Adss (MGI:87948)
chr1	244452012	244640361	1q44	1q44	617510	CATSPERE, C10orf101	Cation channel, sprem-associated, auxiliary subunit epsilon	CATSPERE	257044	ENSG00000179397			Catspere2,Catspere1 (MGI:5589632,MGI:3647531)
chr1	244652759	244709033	1q44	1q44	614638	DESI2, PPPDE1	Desumoylating isopeptidase 2	DESI2	51029	ENSG00000121644			Desi2 (MGI:1926075)
chr1	244835305	244845062	1q44	1q44	614698	COX20, FAM36A	Cytochrome c oxidase 20, S. cerevisiae, homolog of	COX20	116228	ENSG00000203667		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Cox20 (MGI:1913609)
chr1	244850299	244864524	1q44	1q44	602869	HNRNPU, HNRPU, SAFA, EIEE54	Heterogeneous nuclear ribonucleoprotein U	HNRNPU	3192	ENSG00000153187		Epileptic encephalopathy, early infantile, 54, 617391 (3), Autosomal dominant	Hnrnpu (MGI:1858195)
chr1	245154984	245709431	1q44	1q44	614026	KIF26B	Kinesin family member 26B	KIF26B	55083	ENSG00000162849			Kif26b (MGI:2447076)
chr1	245749339	246507341	1q44	1q44	608783	SMYD3	SET and MYND domain-containing protein 3	SMYD3	64754	ENSG00000185420			Smyd3 (MGI:1916976)
chr1	246540560	246566262	1q44	1q44	607055	TFB2M	Transcription factor B2, mitochondrial	TFB2M	64216	ENSG00000162851			Tfb2m (MGI:107937)
chr1	246566336	246668586	1q44	1q44	613439	CNST	Consortin	CNST	163882	ENSG00000162852			Cnst (MGI:2445141)
chr1	246839097	246931977	1q44	1q44	610853	AHCTF1, ELYS	AT hook containing transcription factor 1	AHCTF1	25909	ENSG00000153207			Ahctf1 (MGI:1915033)
chr1	246945546	247008092	1q44	1q44	616348	ZNF695, SBZF3	Zinc finger protein 695	ZNF695	57116	ENSG00000197472			
chr1	247121974	247172378	1q44	1q44	194631	ZNF124	Zinc finger protein-124 (HZF-16)	ZNF124	7678	ENSG00000196418			Gm20541 (MGI:5142006)
chr1	247297412	247333375	1q44	1q44	613911	ZNF496, NIZP1, ZFP496	Zinc finger protein 496	ZNF496	84838	ENSG00000162714			Zkscan17 (MGI:2679270)
chr1	247416155	247449107	1q44	1q44	606416	NLRP3, CIAS1, FCU, FCAS1, NALP3, PYPAF1, DFNA34, KEFH	NLR family, pyrin domain containing 3	NLRP3	114548	ENSG00000162711		CINCA syndrome, 607115 (3), Autosomal dominant; Deafness, autosomal dominant 34, with or without inflammation, 617772 (3), Autosomal dominant; Familial cold-induced inflammatory syndrome 1, 120100 (3), Autosomal dominant; Keratoendothelitis fugax hereditaria, 148200 (3), Autosomal dominant; Muckle-Wells syndrome, 191900 (3), Autosomal dominant	Nlrp3 (MGI:2653833)
chr1	247672117	247673040	1q44	1q44	611677	OR13G1	Olfactory receptor, family 13, subfamily G, member 1	OR13G1	441933	ENSG00000197437			Olfr309 (MGI:3030143)
chr1	247895586	247896530	1q44	1q44	616729	OR2W3	Olfactory receptor family 2 subfamily W member 3	OR2W3	343171	ENSG00000238243			Olfr322 (MGI:3030156)
chr1	248739414	248755786	1q44	1q44	617067	LYPD8	LY6/PLAUR domain-containing protein 8	LYPD8	646627	ENSG00000259823			Lypd8 (MGI:1917413)
chr1	248850003	248860760	1q44	1q44	617758	ZNF692, AREBP	Zinc finger protein 692	ZNF692	55657	ENSG00000171163			Zfp692 (MGI:2144276)
chr1	0	248956422	Chr.1		108420	SPGF2, ASG	Spermatogenic failure 2		100653377		inversion of chromosome 1	Spermatogenic failure 2, 108420 (2), Autosomal dominant	
chr2	0	12000000	2p25		612396	ALLC	Allantoicase	ALLC	55821	ENSG00000151360	nonfunctional in humans		
chr2	0	23800000	2pter-p24		115800	CTRCT29	Cataract 29, coralliform		101867602		between D2S297 and D2S2269	Cataract 29, coralliform, 115800 (2), Autosomal dominant	
chr2	0	41500000	2p25-p22		602134	ETM2, ETM	Tremor, hereditary essential, 2	ETM2	2112		max lod at D2S272	Essential tremor, hereditary, 2, 602134 (2), Autosomal dominant	
chr2	0	23800000	2p25-p24		607329	HYT3	Hypertension, essential, susceptibility to, 3		387575			{Hypertension, essential, susceptibility to, 3}, 145500 (2), Multifactorial	
chr2	0	12000000	2p25		609402	PEE2	Preeclampsia/eclampsia 2		780908			Preeclampsia/eclampsia 2, 609402 (2)	
chr2	0	83100000	2p25-p12		101850	PPKP3	Keratoderma, palmoplantar, punctate type III				max lod at ACP1 and IGKC	?Keratoderma, palmoplantar, punctate type 3, 101850 (2), Autosomal dominant	
chr2	38813	47076	2p25.3	2p25.3	611395	FAM110C	Family with sequence similarity 110, member C	FAM110C	642273	ENSG00000184731			Fam110c (MGI:1918813)
chr2	218135	264865	2p25.3	2p25.3	617314	SH3YL1	SH3 domain- and SYLF domain-containing protein 1	SH3YL1	26751	ENSG00000035115			Sh3yl1 (MGI:1346118)
chr2	264868	278282	2p25	2p25.3	171500	ACP1	Acid phosphatase 1, soluble	ACP1	52	ENSG00000143727			Acp1 (MGI:87881)
chr2	663876	677467	2p25.3	2p25.3	613220	TMEM18	Transmembrane protein 18	TMEM18	129787	ENSG00000151353			
chr2	1413287	1542726	2p25	2p25.3	606765	TPO, TPX, TDH2A	Thyroid peroxidase	TPO	7173	ENSG00000115705		Thyroid dyshormonogenesis 2A, 274500 (3), Autosomal recessive	Tpo (MGI:98813)
chr2	1631886	1744851	2p25.3	2p25.3	605158	PXDN, D2S448E, KIAA0230, PRG2, PXN, COPOA, ASGD7	Peroxidasin, Drosophila, homolog of	PXDN	7837	ENSG00000130508		Anterior segment dysgenesis 7, with sclerocornea, 269400 (3), Autosomal recessive	Pxdn (MGI:1916925)
chr2	1789112	2331387	2p24	2p25.3	613084	MYT1L, KIAA1106, MRD39	Myelin transcription factor 1-like	MYT1L	23040	ENSG00000186487		Mental retardation, autosomal dominant 39, 616521 (3), Autosomal dominant	Myt1l (MGI:1100511)
chr2	3188923	3377931	2p25.2	2p25.3	608998	EIPR1, TSSC1	EARP complex and GARP complex interacting protein 1	EIPR1	7260	ENSG00000032389			Eipr1 (MGI:1289332)
chr2	3379244	3479570	2p25.3	2p25.3	614139	TRAPPC12, TTC15, PEBAS	Trafficking protein particle complex, subunit 12	TRAPPC12	51112	ENSG00000171853		Encephalopathy, progressive, early-onset, with brain atrophy and spasticity, 617669 (3), Autosomal recessive	Trappc12 (MGI:2445089)
chr2	3497918	3519578	2p25.3	2p25.3	613400	ADI1, SIPL	Acireductone dioxygenase 1	ADI1	55256	ENSG00000182551			Adi1 (MGI:2144929)
chr2	3531812	3558370	2p25	2p25.3	604123	RNASEH1, PEOB2	Ribonuclease H1	RNASEH1	246243	ENSG00000171865	pseudogenes on chr. 17 and chr.1	Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 2, 616479 (3), Autosomal recessive	Rnaseh1 (MGI:1335073)
chr2	3575262	3580918	2p25	2p25.3	603658	RPS7, DBA8	Ribosomal protein S7	RPS7	6201	ENSG00000171863		Diamond-Blackfan anemia 8, 612563 (3), Autosomal dominant	Rps7 (MGI:1333818)
chr2	3594831	3644643	2p25.3	2p25.3	612502	COLEC11, CLK1, 3MC2	Collectin 11	COLEC11	78989	ENSG00000118004		3MC syndrome 2, 265050 (3), Autosomal recessive	Colec11 (MGI:1918943)
chr2	5692666	5701384	2p25	2p25.2	600898	SOX11, MRD27	SRY (sex-determining region Y)-box 11	SOX11	6664	ENSG00000176887		Mental retardation, autosomal dominant 27, 615866 (3), Autosomal dominant	Sox11 (MGI:98359)
chr2	6840416	6866634	2p25.2	2p25.2	611787	CMPK2	Cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	CMPK2	129607	ENSG00000134326			Cmpk2 (MGI:99830)
chr2	6865732	6898238	2p25.2	2p25.2	607810	RSAD2, VIPERIN	Radical S-adenosyl methionine domain containing 2	RSAD2	91543	ENSG00000134321			Rsad2 (MGI:1929628)
chr2	6900000	16500000	2p25.1-p24.3		609946	DFNB47	Deafness, neurosensory, autosomal recessive 47	DFNB47	449489		max lod at D2S1400 and D2S262	Deafness, neurosensory, autosomal recessive 47, 609946 (2), Autosomal recessive	
chr2	8681982	8684452	2p25	2p25.1	600386	ID2	Inhibitor of DNA binding 2, dominant negative	ID2	3398	ENSG00000115738			Id2 (MGI:96397)
chr2	8721133	8837638	2p25.1	2p25.1	615759	KIDINS220, ARMS, SINO	Kinase D-interacting substrate, 220kD	KIDINS220	57498	ENSG00000134313		Spastic paraplegia, intellectual disability, nystagmus, and obesity, 617296 (3), Autosomal dominant	Kidins220 (MGI:1924730)
chr2	8852689	9003749	2p25.1	2p25.1	611949	MBOAT2, LPCAT4	Membrane-bound O-acyltransferase domain-containing 2	MBOAT2	129642	ENSG00000143797			Mboat2 (MGI:1914466)
chr2	9206764	9405682	2p24	2p25.1	603817	DDEF2, PAP	Development- and differentiation-enhancing factor 2	ASAP2	8853	ENSG00000151693			Asap2 (MGI:2685438)
chr2	9405680	9423568	2p25.2	2p25.1	607153	ITGB1BP1, ICAP1, ICAP1A, ICAP1B	Integrin cytoplasmic domain-associated protein 1 beta	ITGB1BP1	9270	ENSG00000119185			Itgb1bp1 (MGI:1306802)
chr2	9488485	9555819	2p25	2p25.1	603639	ADAM17, TACE, NISBD1	A disintegrin and metalloproteinase domain 17	ADAM17	6868	ENSG00000151694	mutation identified in 1 NISBD1 family	?Inflammatory skin and bowel disease, neonatal, 1, 614328 (3), Autosomal recessive	Adam17 (MGI:1096335)
chr2	9583966	9631054	2p25.1	2p25.1	609009	TYHAQ	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta isoform	YWHAQ	10971	ENSG00000134308	pseudogene on chr.22		Ywhaq,Ywhaq-ps3 (MGI:3650241,MGI:891963)
chr2	9843441	9934415	2p25	2p25.1	604904	RAF1B, RAFI63, SL1	TATA box-binding protein-associated factor 1B	TAF1B	9014	ENSG00000115750			Taf1b (MGI:109577)
chr2	9951662	10002283	2p25.1	2p25.1	609786	GRHL1, LBP32, MGR	Grainyhead-like 1	GRHL1	29841	ENSG00000134317			Grhl1 (MGI:2182540)
chr2	10043554	10054835	2p25	2p25.1	603301	KLF11, TIEG2, FKLF1, FKLF, MODY7	Kruppel-like factor 11	KLF11	8462	ENSG00000172059		Maturity-onset diabetes of the young, type VII, 610508 (3)	Klf11 (MGI:2653368)
chr2	10122567	10131418	2p25-p24	2p25.1	180390	RRM2	Ribonucleotide reductase, M2 polypeptide	RRM2	6241	ENSG00000171848	pseudogenes on 1p, 1q, Xp		Rrm2 (MGI:98181)
chr2	10302123	10427616	2p25.1	2p25.1	600207	HPCAL1	Hippocalcin-like 1	HPCAL1	3241	ENSG00000115756			Hpcal1 (MGI:1855689)
chr2	10440370	10448553	2p25	2p25.1	165640	ODC1	Ornithine decarboxylase-1	ODC1	4953	ENSG00000115758	pseudogene ODCP on 7q31-qter	{Colonic adenoma recurrence, reduced risk of}, 114500 (3), Autosomal dominant	Odc1 (MGI:97402)
chr2	10570765	10689986	2p25.1	2p25.1	616197	NOL10, PQBP5	Nucleolar protein 10	NOL10	79954	ENSG00000115761			Nol10 (MGI:2684913)
chr2	10783390	10837976	2p25-p24	2p25.1	611099	PDIA6, ERP5	Protein disulfide isomerase, family A, member 6	PDIA6	10130	ENSG00000143870			Pdia6 (MGI:1919103)
chr2	10911936	10914224	2p25	2p25.1	603787	KCNF1, KH1	Potassium voltage-gated channel, subfamily F, member 1	KCNF1	3754	ENSG00000162975			Kcnf1 (MGI:2687399)
chr2	11179758	11345406	2p24	2p25.1	604002	ROCK2	RHO-associated coiled-coil-containing protein kinase 2	ROCK2	9475	ENSG00000134318			Rock2 (MGI:107926)
chr2	11481674	11642787	2p25.1	2p25.1	611736	GREB1	GREB1 protein	GREB1	9687	ENSG00000196208			Greb1 (MGI:2149712)
chr2	11658118	11670205	2p25.1	2p25.1	605538	NTSR2	Neurotensin receptor 2	NTSR2	23620	ENSG00000169006			Ntsr2 (MGI:108018)
chr2	11677543	11827408	2p21	2p25.1	605518	LPIN1	Lipin 1	LPIN1	23175	ENSG00000134324	related to LSL	Myoglobinuria, acute recurrent, autosomal recessive, 268200 (3), Autosomal recessive	Lpin1 (MGI:1891340)
chr2	12000000	41500000	2p24-p22		610760	CLQTL2	Cholesterol level quantitative trait locus 2		100188817		max lod at D2S1360	[Cholesterol level QTL 2], 610760 (2)	
chr2	12000000	23800000	2p24		609800	GEFSP4	Generalized epilepsy with febrile seizures plus, type 4		100188796		max lod at D2S305	Epilepsy, generalized, with febrile seizures plus, type 4, 609800 (2), Autosomal dominant	
chr2	12000000	23800000	2p24		609271	KTCN4	Keratoconus 4		550624		between D2S305 and D2S2373	Keratoconus 4, 609271 (2)	
chr2	14632682	14651915	2p24.3	2p24.3	611234	FAM84A, NSE1	Family with sequence similarity 84, member A	FAM84A	151354	ENSG00000162981			Fam84a (MGI:2145011)
chr2	14998066	15561347	2p24-p23	2p24.3	608025	NBAS, NAG, SOPH, ILFS2	Neuroblastoma-amplified sequence	NBAS	51594	ENSG00000151779		Infantile liver failure syndrome 2, 616483 (3), Autosomal recessive; Short stature, optic nerve atrophy, and Pelger-Huet anomaly, 614800 (3), Autosomal recessive	Nbas (MGI:1918419)
chr2	15591620	15631110	2p24	2p24.3	601257	DDX1	DEAD/H box-1	DDX1	1653	ENSG00000079785			Ddx1 (MGI:2144727)
chr2	15920398	15936017	2p24.3	2p24.3	615968	MYCNUT	MYCN upstream transcript, noncoding	MYCNUT	103752554				
chr2	15936264	15942458	2p24.1	2p24.3	605374	MYCNOS, NCYM	Oncogene NCYM, opposite strand	MYCNOS	10408				
chr2	15940437	15947006	2p24.1	2p24.3	164840	MYCN, NMYC, ODED, MODED	Oncogene NMYC	MYCN	4613	ENSG00000134323	proximal to APOB	Feingold syndrome 1, 164280 (3), Autosomal dominant	Mycn (MGI:97357)
chr2	16050426	16085688	2p24.3	2p24.3	616132	GACAT3, LINC01458	Gastric cancer-associated transcript 3, noncoding	GACAT3	104797537				
chr2	17540539	17656438	2p	2p24.2	600817	VSNL1	Visinin-like 1	VSNL1	7447	ENSG00000163032			Vsnl1 (MGI:1349453)
chr2	17663811	17753832	2p24.2	2p24.2	609387	SMC6L1, SMC6	Structural maintenance of chromosomes 6-like 1	SMC6	79677	ENSG00000163029			Smc6 (MGI:1914491)
chr2	17753686	17785919	2p24.2	2p24.2	612449	GEN1	GEN1, Drosophila, homolog of	GEN1	348654	ENSG00000178295			Gen1 (MGI:2443149)
chr2	17816509	17817797	2p24.2	2p24.2	612209	MSGN1	Mesogenin 1	MSGN1	343930	ENSG00000151379			Msgn1 (MGI:1860483)
chr2	17877846	17932960	2p24	2p24.2	603888	KCNS3, KV9.3	Potassium voltate-gated channel, delayed-rectifier, subfamily S, member 3	KCNS3	3790	ENSG00000170745			Kcns3 (MGI:1098804)
chr2	18554722	18560692	2p24.2	2p24.2	616796	RDH14, SDR7C4, PAN2	Retinol dehydrogenase 14	RDH14	57665	ENSG00000240857			Rdh14 (MGI:1920402)
chr2	18562870	18589579	2p24.2	2p24.2	610526	NT5C1B, CN1B, AIRP	5'-nucleotidase, cytosolic, Ib	NT5C1B	93034	ENSG00000185013			Nt5c1b (MGI:1918131)
chr2	19351484	19358610	2p24	2p24.1	608891	ODD, OSR1	ODD-skipped, Drosophila, homolog of	OSR1	130497	ENSG00000143867			Osr1 (MGI:1344424)
chr2	19910259	19990122	2p24.1	2p24.1	613602	WDR35, NAOFEN, KIAA1336, CED2, SRTD7	WD repeat-containing protein 35	WDR35	57539	ENSG00000118965		Cranioectodermal dysplasia 2, 613610 (3), Autosomal recessive; Short-rib thoracic dysplasia 7 with or without polydactyly, 614091 (3), Autosomal recessive	Wdr35 (MGI:1921932)
chr2	19992051	20012693	2p24-p23	2p24.1	602109	MATN3, EDM5, HOA, OS2	Matrilin 3	MATN3	4148	ENSG00000132031	mutation identified in 1 SEMDM family	Epiphyseal dysplasia, multiple, 5, 607078 (3), Autosomal dominant; {Osteoarthritis susceptibility 2}, 140600 (3), Autosomal dominant; ?Spondyloepimetaphyseal dysplasia, 608728 (3), Autosomal recessive	Matn3 (MGI:1328350)
chr2	20200796	20225432	2p24.1	2p24.1	186355	SDC1	Syndecan 1	SDC1	6382	ENSG00000115884	close to NMYC in mouse		Sdc1 (MGI:1349162)
chr2	20248690	20352427	2p22-p21	2p24.1	607205	PUM2, KIAA0235	Pumilio, Drosophila, homolog of, 2	PUM2	23369	ENSG00000055917			Pum2 (MGI:1931751)
chr2	20447070	20449444	2p24.1	2p24.1	165370	RHOB, ARHB, ARH6, RHOH6	RAS homolog gene family, member B (oncogene RHO H6)	RHOB	388	ENSG00000143878			Rhob (MGI:107949)
chr2	20552933	20651660	2p24.1	2p24.1	609359	HS1BP3, FLJ14249, ETM2	HS1-binding protein 3	HS1BP3	64342	ENSG00000118960			Hs1bp3 (MGI:1913224)
chr2	20666663	20679242	2p24-p23	2p24.1	604651	GDF7	Growth/differentiation factor 7	GDF7	151449	ENSG00000143869			Gdf7 (MGI:95690)
chr2	20682488	20823138	2p24.1	2p24.1	613570	LDAH, C2orf43	Lipid droplet associated hydrolase	LDAH	60526	ENSG00000118961			Ldah (MGI:1916082)
chr2	21001428	21044072	2p24	2p24.1	107730	APOB, FLDB, LDLCQ4	Apolipoprotein B (including Ag(x) antigen)	APOB	338	ENSG00000084674	1 gene for liver apo-B100 and gut apo-B48; Ag linked	Hypercholesterolemia, due to ligand-defective apo B, 144010 (3), Autosomal dominant; Hypobetalipoproteinemia, 615558 (3), Autosomal recessive	Apob (MGI:88052)
chr2	23687623	23927113	2p24.1-p23.3	2p24.1-p23.3	615347	ATAD2B, KIAA1240	ATPase family, AAA domain-containing, member 2B	ATAD2B	54454	ENSG00000119778			Atad2b (MGI:2444798)
chr2	23800000	36300000	2p23.3-p22.3		609955	GINGF3, HGF3, GGF3	Fibromatosis, gingival, 3	GINGF3	780916		between D2S2221 and D2S1788	Fibromatosis, gingival, 3, 609955 (2)	
chr2	24009021	24026774	2p23.3	2p23.3	617845	MFSD2B	Major facilitator superfamily domain-containing protein 2B	MFSD2B	388931	ENSG00000205639			Mfsd2b (MGI:3583946)
chr2	24029335	24047425	2p23.3	2p23.3	616234	C2orf44, WDCP	WD repeat- and coiled-coil-containing protein	WDCP	80304	ENSG00000163026			Wdcp (MGI:3040699)
chr2	24033204	24067742	2p23.3	2p23.3	600620	FKBP1B, PKBP1L	FK506-binding protein 1B	FKBP1B	2281	ENSG00000119782			Fkbp1b (MGI:1336205)
chr2	24067583	24076443	2p25	2p23.3	607835	SAP14, SF3B14, P14	Spliceosome-associated protein, 14kD	SF3B6	51639	ENSG00000115128			Sf3b6 (MGI:1913305)
chr2	24077427	24085766	2p23.3	2p23.3	605171	TP53I3, PIG3	Tumor protein p53-inducible protein 3	TP53I3	9540	ENSG00000115129			
chr2	24202863	24360537	2p25	2p23.3	604464	ITSN2, SH3D1B, SWAP, KIAA1256	Intersectin 2	ITSN2	50618	ENSG00000198399			Itsn2 (MGI:1338049)
chr2	24492049	24770701	2p23	2p23.3	602691	NCOA1, SRC1	Nuclear receptor coactivator 1	NCOA1	8648	ENSG00000084676			Ncoa1 (MGI:1276523)
chr2	24790266	24793381	2p23.3	2p23.3	617342	PRTHD1, C2orf79	Peptidyl-tRNA hydrolase domain-containing 1	PTRHD1	391356	ENSG00000184924			Ptrhd1 (MGI:1916959)
chr2	24793114	24822375	2p23.3	2p23.3	611504	CENPO	Centromeric protein O	CENPO	79172	ENSG00000138092			Cenpo (MGI:1923800)
chr2	24819168	24920016	2p24-p22	2p23.3	600291	ADCY3, BMIQ19	Adenylate cyclase-3	ADCY3	109	ENSG00000138031		{Obesity, susceptibility to, BMIQ19}, 617885 (3)	Adcy3 (MGI:99675)
chr2	24943635	24972093	2p23.3	2p23.3	613527	DNAJC27, RBJ	DNAJ/HSP40 homolog, subfamily, C, member 27	DNAJC27	51277	ENSG00000115137			Dnajc27 (MGI:2443036)
chr2	25042103	25159136	2p23.3	2p23.3	616797	EFR3B, KIAA0953	Efr3, S. cerevisiae, homolog of, B	EFR3B	22979	ENSG00000084710			Efr3b (MGI:2444851)
chr2	25160852	25168850	2p23.3	2p23.3	176830	POMC, OBAIRH	Proopiomelanocortin (adrenocorticotropin/beta-lipotropin)	POMC	5443	ENSG00000115138		Obesity, adrenal insufficiency, and red hair due to POMC deficiency, 609734 (3), Autosomal recessive; {Obesity, early-onset, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Pomc (MGI:97742)
chr2	25232960	25342589	2p23	2p23.3	602769	DNMT3A, TBRS	DNA methyltransferase 3A	DNMT3A	1788	ENSG00000119772		Acute myeloid leukemia, somatic, 601626 (3); Tatton-Brown-Rahman syndrome, 615879 (3), Autosomal dominant	Dnmt3a (MGI:1261827)
chr2	25377242	25673673	2p23-p22	2p23.3	602415	DTNB	Dystrobrevin, beta	DTNB	1838	ENSG00000138101			Dtnb (MGI:1203728)
chr2	25733752	25878515	2p23.3	2p23.3	612991	ASXL2, KIAA1685, SHAPNS	Additional sex combs-like 2	ASXL2	55252	ENSG00000143970		Shashi-Pena syndrome, 617190 (3), Autosomal dominant	Asxl2 (MGI:1922552)
chr2	25926585	25982739	2p23	2p23.3	602845	KIF3C	Kinesin family member 3C	KIF3C	3797	ENSG00000084731			Kif3c (MGI:107979)
chr2	26033859	26137453	2p23.3	2p23.3	612672	RAB10	Ras-associated protein	RAB10	10890	ENSG00000084733			Rab10 (MGI:105066)
chr2	26190634	26244725	2p23	2p23.3	600890	HADHA, MTPA	Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/ enoyl-Coenzyme A hydratase (trifunctional protein), alpha subunit	HADHA	3030	ENSG00000084754		Fatty liver, acute, of pregnancy, 609016 (3), Autosomal recessive; HELLP syndrome, maternal, of pregnancy, 609016 (3), Autosomal recessive; LCHAD deficiency, 609016 (3), Autosomal recessive; Trifunctional protein deficiency, 609015 (3), Autosomal recessive	Hadha (MGI:2135593)
chr2	26244747	26290464	2p23	2p23.3	143450	HADHB	Hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase /enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit	HADHB	3032	ENSG00000138029		Trifunctional protein deficiency, 609015 (3), Autosomal recessive	Hadhb (MGI:2136381)
chr2	26346085	26395890	2p23.3	2p23.3	607915	SELENOI, SELI	Selenoprotein I	SELENOI	85465	ENSG00000138018			Selenoi (MGI:107898)
chr2	26401911	26456712	2p23.3	2p23.3	615288	DRC1, CCDC164, C2orf39, CILD21	Dynein regulatory complex, subunit 1, Chlamydomonas, homolog of	DRC1	92749	ENSG00000157856		Ciliary dyskinesia, primary, 21, 615294 (3), Autosomal recessive	Drc1 (MGI:2685906)
chr2	26457202	26558697	2p23-p22	2p23.3	603681	OTOF, DFNB9, NSRD9, AUNB1	Otoferlin	OTOF	9381	ENSG00000115155	symbolized DFNB6 by authors	Auditory neuropathy, autosomal recessive, 1, 601071 (3), Autosomal recessive; Deafness, autosomal recessive 9, 601071 (3), Autosomal recessive	Otof (MGI:1891247)
chr2	26692712	26733419	2p23	2p23.3	603220	KCNK3, TASK, PPH4	Potassium channel, subfamily K, member 3	KCNK3	3777	ENSG00000171303		Pulmonary hypertension, primary, 4, 615344 (3), Autosomal dominant	Kcnk3 (MGI:1100509)
chr2	26786013	26794588	2p24-p21	2p23.3	117139	CENPA	Centromere protein A, 17kD	CENPA	1058	ENSG00000115163			Cenpa (MGI:88375)
chr2	26848100	26950350	2p23.3	2p23.3	608383	DPYSL5, CRMP5, CRAM	Dihydropyrimidinase-like 5	DPYSL5	56896	ENSG00000157851			Dpysl5 (MGI:1929772)
chr2	26970370	27027218	2p23.3-p23.1	2p23.3	605788	MAPRE3, EB3, RP3, EBF3	Microtubule-associated protein, RP/EB family, member 3	MAPRE3	22924	ENSG00000084764			Mapre3 (MGI:2140967)
chr2	27032905	27041696	2p23.3	2p23.3	615301	TMEM214	Transmembrane protein 214	TMEM214	54867	ENSG00000119777			Tmem214 (MGI:1916046)
chr2	27051422	27070621	2p23.3	2p23.3	615900	AGBL5, CCP5, RP75	AATP/GTP-binding protein-like 5	AGBL5	60509	ENSG00000084693		Retinitis pigmentosa 75, 617023 (3), Autosomal recessive	Agbl5 (MGI:2441745)
chr2	27078566	27086402	2p23.3-p23.2	2p23.3	130660	EMILIN1, EMILIN	Elastin microfibril interfacer 1	EMILIN1	11117	ENSG00000138080			Emilin1 (MGI:1926189)
chr2	27086742	27100750	2p23.3-p23.2	2p23.3	614058	KHK	Ketohexokinase (fructokinase)	KHK	3795	ENSG00000138030		[Fructosuria], 229800 (3), Autosomal recessive	Khk (MGI:1096353)
chr2	27099352	27119126	2p23.3	2p23.3	606137	CGREF1, CGR11	Cell growth regulator with EF-hand domain 1	CGREF1	10669	ENSG00000138028			Cgref1 (MGI:1915817)
chr2	27123779	27131113	2p23.3	2p23.3	612195	ABHD1, LABH1	Abhydrolase domain-containing 1	ABHD1	84696	ENSG00000143994			
chr2	27130755	27134674	2p23	2p23.3	606395	PREB	Prolactin regulatory element-binding protein	PREB	10113	ENSG00000138073			Preb (MGI:1355326)
chr2	27148891	27153585	2p24-p23	2p23.3	609635	TCF23	Transcription factor 23	TCF23	150921	ENSG00000163792			Tcf23 (MGI:1934960)
chr2	27199586	27212341	2p23.3	2p23.3	604024	SLC5A6, SMVT	Solute carrier family 5 (sodium dependent vitamin transporter), member 6	SLC5A6	8884	ENSG00000138074			Slc5a6 (MGI:2660847)
chr2	27217389	27243791	2p21	2p23.3	114010	CAD, CDG1Z, EIEE50	CAD trifunctional protein of pyrimidine biosynthesis	CAD	790	ENSG00000084774		Epileptic encephalopathy, early infantile, 50, 616457 (3), Autosomal recessive	Cad (MGI:1916969)
chr2	27254571	27275862	2p23.3	2p23.3	602878	SLC30A3, ZNT3	Solute carrier family 30 (zinc transporter), member 3	SLC30A3	7781	ENSG00000115194			Slc30a3 (MGI:1345280)
chr2	27275420	27281429	2p23.3	2p23.3	613946	DNAJC5G	DNAJ/HSP40 homolog, subfamily C, member 5, gamma	DNAJC5G	285126	ENSG00000163793			Dnajc5g (MGI:3045263)
chr2	27282428	27307438	2p23.3	2p23.3	606474	TRIM54, RNF30, MURF3	Tripartite motif containing 54	TRIM54	57159	ENSG00000138100			Trim54 (MGI:1889623)
chr2	27307399	27308444	2p23-p21	2p23.3	600945	UCN, UROC	Urocortin	UCN	7349	ENSG00000163794			Ucn (MGI:1276123)
chr2	27309491	27323101	2p23-p21	2p23.3	137960	MPV17, MTDPS6	Mpv17 transgene, mouse, glomerulosclerosis, homolog of	MPV17	4358	ENSG00000115204		Mitochondrial DNA depletion syndrome 6 (hepatocerebral type), 256810 (3), Autosomal recessive	Mpv17 (MGI:97138)
chr2	27364351	27370456	2p23.3	2p23.3	606687	EIF2B4	Eukaryotic translation initiation factor 2B, subunit 4	EIF2B4	8890	ENSG00000115211		Leukoencephalopathy with vanishing white matter, 603896 (3), Autosomal recessive; Ovarioleukodystrophy, 603896 (3), Autosomal recessive	Eif2b4 (MGI:95300)
chr2	27370495	27377532	2p23-p22	2p23.3	605963	SNX17	Sorting nexin 17	SNX17	9784	ENSG00000115234			Snx17 (MGI:2387801)
chr2	27377230	27380865	2p24.1-p22.3	2p23.3	613598	ZNF513, RP58	Zinc finger protein 513	ZNF513	130557	ENSG00000163795	mutation identified in 1 RP58 family	?Retinitis pigmentosa 58, 613617 (3), Autosomal recessive	Zfp513 (MGI:2141255)
chr2	27381198	27409682	2p23.3	2p23.3	605119	PPM1G, PP2CG	Protein phosphatase, magnesium/manganese-dependent, 1G	PPM1G	5496	ENSG00000115241			Ppm1g (MGI:106065)
chr2	27427789	27442258	2p23	2p23.3	606010	NRBP	Nuclear receptor-binding protein	NRBP1	29959	ENSG00000115216			Nrbp1 (MGI:2183436)
chr2	27444372	27489818	2p23.3	2p23.3	607386	IFT172, SLB, KIAA1179, SRTD10, RP71	Intraflagellar transport 172, Chlamydomonas, homolog of	IFT172	26160	ENSG00000138002		Retinitis pigmentosa 71, 616394 (3), Autosomal recessive; Short-rib thoracic dysplasia 10 with or without polydactyly, 615630 (3), Autosomal recessive	Ift172 (MGI:2682064)
chr2	27491882	27495501	2p23.3	2p23.3	611905	FNDC4, FRCP1	Fibronectin type III domain-containing protein 4	FNDC4	64838	ENSG00000115226			Fndc4 (MGI:1917195)
chr2	27496838	27523688	2p23.3-p23.2	2p23.3	600842	GCKR, GKRP, FGQTL5	Glucokinase (hexokinase 4) regulatory protein	GCKR	2646	ENSG00000084734		[Fasting plasma glucose level QTL 5], 613463 (3)	Gckr (MGI:1096345)
chr2	27628647	27650845	2p23.3	2p23.3	611479	XAB1, MBDIN	XPA-binding protein	GPN1	11321	ENSG00000198522			Gpn1 (MGI:1921504)
chr2	27642567	27663839	2p25	2p23.3	612762	SUPT7L, SUPT7H, SPT7l, KIAA0764, STAF65G	Suppressor of TY 7-like	SUPT7L	9913	ENSG00000119760			Supt7l (MGI:1919445)
chr2	27663470	27694979	2p23.3-p23.2	2p23.3	602655	SLC4A1AP	Solute carrier family 4 (anion exchanger), member 1, adaptor protein	SLC4A1AP	22950	ENSG00000163798			Slc4a1ap (MGI:1196608)
chr2	27771716	27779740	2p22	2p23.2	610059	MRPL33	Mitochondrial ribosomal protein L33	MRPL33	9553	ENSG00000243147			Mrpl33 (MGI:2137225)
chr2	27781363	27890395	2p23.2	2p23.2	611132	RBKS	Ribokinase	RBKS	64080	ENSG00000171174			Rbks (MGI:1918586)
chr2	27888708	28338900	2p23.2	2p23.2	610497	BRE, BRCC4, BRCC45	Brain and reproductive organ-expressed protein	BABAM2	9577	ENSG00000158019			Babam2 (MGI:1333875)
chr2	28392854	28417311	2p23.2	2p23.2	601575	FOSL2	FOS-like antigen-2	FOSL2	2355	ENSG00000075426			Fosl2 (MGI:102858)
chr2	28488577	28644134	2p23.2	2p23.2	610179	PLB1, PLB, FLJ30866	Phospholipase B1	PLB1	151056	ENSG00000163803			Plb1 (MGI:1922406)
chr2	28751747	28802939	2p23	2p23.2	600590	PPP1CB, NSLH2	Protein phosphatase-1, catalytic subunit, beta isoform	PPP1CB	5500	ENSG00000213639		Noonan syndrome-like disorder with loose anagen hair 2, 617506 (3), Autosomal dominant	Ppp1cb (MGI:104871)
chr2	28810833	28850609	2p23.2	2p23.2	614029	SPDYA, SPY1, RINGOA	Speedy, xenopus, homolog of, A	SPDYA	245711	ENSG00000163806			Spdya (MGI:1918141)
chr2	28894642	28948219	2p23.2	2p23.2	616195	WDR43, UTP5, KIAA0007	WD repeat-containing protein 43	WDR43	23160	ENSG00000163811			Wdr43 (MGI:1919765)
chr2	29061689	29074260	2p24.1-p23.1	2p23.2	613425	C2orf71	Chromosome 2 open reading frame 71	C2orf71	388939	ENSG00000179270		Retinitis pigmentosa 54, 613428 (3)	BC027072 (MGI:2385061)
chr2	29190991	29921610	2p23	2p23.2-p23.1	105590	ALK, NBLST3	Anaplastic lymphoma kinase (Ki-1)	ALK	238	ENSG00000171094		{Neuroblastoma, susceptibility to, 3}, 613014 (3)	Alk (MGI:103305)
chr2	30146567	30160532	2p23.1	2p23.1	609726	YPEL5	Yippee-like 5	YPEL5	51646	ENSG00000119801			Ypel5 (MGI:1916937)
chr2	30231530	30260032	2p23.1	2p23.1	611763	LBH	Limb bud and heart development, mouse, homolog of	LBH	81606	ENSG00000213626			Lbh (MGI:1925139)
chr2	30447225	30644224	2p23.1	2p23.1	614241	LCLAT1, ALCAT1, AGPAT8	Lysocardiolipin acyltransferase 1	LCLAT1	253558	ENSG00000172954			Lclat1 (MGI:2684937)
chr2	30888517	31138725	2p23.2	2p23.1	608225	GALNT14	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 14	GALNT14	79623	ENSG00000158089			Galnt14 (MGI:1918935)
chr2	31234013	31269450	2p21	2p23.1	605891	EHD3	EH domain-containing 3	EHD3	30845	ENSG00000013016			Ehd3 (MGI:1928900)
chr2	31334319	31414776	2p23-p22	2p23.1	607633	XDH, XAN1	Xanthine dehydrogenase (xanthine oxidase)	XDH	7498	ENSG00000158125		Xanthinuria, type I, 278300 (3), Autosomal recessive	Xdh (MGI:98973)
chr2	31522485	31665650	2p23	2p23.1	607306	SRD5A2	Steroid-5-alpha-reductase, alpha polypeptide-2 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha-2)	SRD5A2	6716	ENSG00000277893		Pseudovaginal perineoscrotal hypospadias, 264600 (3), Autosomal recessive	Srd5a2 (MGI:2150380)
chr2	31800000	47500000	2p22.3-p21		114580	CANDF1, CMCT	Candidiasis, familial, 1		117084		between D2S367 and D2S2240	Candidiasis, familial, 1, autosomal dominant, 114580 (2), Autosomal dominant	
chr2	31867187	32011051	2p22-p21	2p22.3	611786	MEMO1, MEMO, C2orf4	Mediator of cell motility 1	MEMO1	51072	ENSG00000162959			Memo1 (MGI:1924140)
chr2	32011648	32039839	2p22.3	2p22.3	612032	DPY30	DPY30, C. elegans, homolog of	DPY30	84661	ENSG00000162961			Dpy30 (MGI:1913560)
chr2	32063550	32157636	2p22-p21	2p22.3	604277	SPAST, SPG4	Spastin	SPAST	6683	ENSG00000021574		Spastic paraplegia 4, autosomal dominant, 182601 (3), Autosomal dominant	Spast (MGI:1858896)
chr2	32165840	32224378	2p22-p21	2p22.3	611148	SLC30A6, ZNT6	Solute carrier family 30 (zinc transporter), member 6	SLC30A6	55676	ENSG00000152683			Slc30a6 (MGI:2386741)
chr2	32224448	32265742	2p22.3	2p22.3	606831	NLRC4, CARD12, CLAN, IPAF, AIFEC, FCAS4	NLR family, caspase recruitment domain-containing 4	NLRC4	58484	ENSG00000091106	mutation identified in 1 FCAS4 family	Autoinflammation with infantile enterocolitis, 616050 (3), Autosomal dominant; ?Familial cold autoinflammatory syndrome 4, 616115 (3), Autosomal dominant	Nlrc4 (MGI:3036243)
chr2	32277888	32307397	2p22.3	2p22.3	617534	YIPF4	Yip1 domain family, member 4	YIPF4	84272	ENSG00000119820			Yipf4 (MGI:1915114)
chr2	32356906	32618898	2p22-p21	2p22.3	605638	BIRC6, KIAA1289	Baculoviral IAP repeat-containing protein-6	BIRC6	57448	ENSG00000115760			Birc6 (MGI:1276108)
chr2	32532152	32532245	2p22.3	2p22.3	616473	MIR558	Micro RNA 558	MIR558	693143		BIRC6 is host gene		
chr2	32902128	33399508	2p12-q22	2p22.3	150390	LTBP1	Latent transforming growth factor beta binding protein 1	LTBP1	4052	ENSG00000049323			Ltbp1 (MGI:109151)
chr2	36300000	38300000	2p22.2		602499	MACOM	Macrophthalmia, colobomatous, with microcornea					Macrophthalmia, colobomatous, with microcornea, 602499 (4), Autosomal dominant	
chr2	36356087	36551134	2p22-p21	2p22.2	606189	CRIM1	Cysteine-rich motor neuron protein 1	CRIM1	51232	ENSG00000150938			Crim1 (MGI:1354756)
chr2	36552238	36598189	2p22.2	2p22.2	604826	FEZ2	Fasciculation and elongation protein zeta 2	FEZ2	9637	ENSG00000171055			Fez2 (MGI:2675856)
chr2	36696689	36814793	2p22.2	2p22.2	617693	VIT, VIT1	Vitrin	VIT	5212	ENSG00000205221			Vit (MGI:1921449)
chr2	36837697	36966606	2p22	2p22.2	614765	STRN	Striatin, calmodulin-binding protein	STRN	6801	ENSG00000115808			Strn (MGI:1333757)
chr2	37099209	37157064	2p21	2p22.2	176871	PRKR	Protein kinase, interferon-inducible double stranded RNA dependent	EIF2AK2	5610	ENSG00000055332			Eif2ak2 (MGI:1353449)
chr2	37167819	37196081	2p22.3	2p22.2	617152	SULT6B1	Sulfotransferase family 6B, member 1	SULT6B1	391365	ENSG00000138068			Sult6b1 (MGI:1920921)
chr2	37201628	37231596	2p22.2	2p22.2	612828	CEBPZ, CBF, NOC1	CCAAT/enhancer-binding protein, zeta	CEBPZ	10153	ENSG00000115816			Cebpz (MGI:109386)
chr2	37231630	37271364	2p22.2	2p22.2	615898	NDUFAF7, MIDA	NADH dehydrogenase (ubiquinone) complex I, assembly factor 7	NDUFAF7	55471	ENSG00000003509			Ndufaf7 (MGI:1920944)
chr2	37250501	37324784	2p21	2p22.2	607077	PRKCN	Protein kinase C, nu	PRKD3	23683	ENSG00000115825			Prkd3 (MGI:1922542)
chr2	37344609	37373321	2p22.2	2p22.2	607065	QPCT, QC	Glutaminyl-peptide cyclotransferase	QPCT	25797	ENSG00000115828			Qpct (MGI:1917786)
chr2	37641881	37672534	2p21	2p22.2	606133	CDC42EP3, CEP3, BORG2	CDC42 effector protein 3	CDC42EP3	10602	ENSG00000163171			Cdc42ep3 (MGI:2384718)
chr2	37920788	38069245	2p22.2	2p22.2	611872	FAM82A1, FAM82A, RMD2	Family with sequence similarity 82, member A1	RMDN2	151393	ENSG00000115841			Rmdn2 (MGI:2147043)
chr2	38067602	38076180	2p22-p21	2p22.2	601771	CYP1B1, GLC3A, ASGD6	Cytochrome P450, subfamily I, dioxin-inducible, polypeptide 1	CYP1B1	1545	ENSG00000138061		Anterior segment dysgenesis 6, multiple subtypes, 617315 (3); Glaucoma 3A, primary open angle, congenital, juvenile, or adult onset, 231300 (3), Autosomal recessive	Cyp1b1 (MGI:88590)
chr2	38293956	38378583	2p22.3	2p22.2-p22.1	609368	ARL3IP2, ATL2	ADP-ribosylation-like factor 6-interacting protein 2 (atlastin 2)	ATL2	64225	ENSG00000119787			Atl2 (MGI:1929492)
chr2	38300000	47500000	2p22.1-p21		614227	HNFJ3	Hyperuricemic nephropathy, familial juvenile, 3		100689490		between rs372139 and rs896986	Hyperuricemic nephropathy, familial juvenile, 3, 614227 (2), Autosomal dominant	
chr2	38563185	38603035	2p22	2p22.1	611208	HNRNPLL, HNRPLL, SRRF	Heterogeneous nuclear ribonucleoprotein L-like	HNRNPLL	92906	ENSG00000143889			Hnrnpll (MGI:1919942)
chr2	38665909	38734766	2p22-p11	2p22.1	137030	GALM, GLAT	Galactose mutarotase	GALM	130589	ENSG00000143891			Galm (MGI:2442420)
chr2	38743598	38751493	2p22-p21	2p22.1	600572	SRSF7, SFRS7	Splicing factor, arginine/serine-rich 7, 35kD	SRSF7	6432	ENSG00000115875			Srsf7 (MGI:1926232)
chr2	38778184	38781964	2p22.1	2p22.1	607006	GEMIN6	GEM-associated protein 6	GEMIN6	79833	ENSG00000152147			Gemin6-ps,Gemin6 (MGI:1914492,MGI:3645567)
chr2	38981548	39124958	2p22-p21	2p22.1	182530	SOS1, GINGF, GF1, HGF, NS4	Son of sevenless, Drosophila, homolog of, 1	SOS1	6654	ENSG00000115904	mutation identified in 1 GINGF1 family	?Fibromatosis, gingival, 1, 135300 (3), Autosomal dominant; Noonan syndrome 4, 610733 (3), Autosomal dominant	Sos1 (MGI:98354)
chr2	39248940	39437311	2p22.1	2p22.1	604921	MAP4K3, GLK	Mitogen-activated protein kinase kinase kinase kinase 3	MAP4K3	8491	ENSG00000011566			Map4k3 (MGI:2154405)
chr2	39736059	39779275	2p22-p21	2p22.1	611751	THUMPD2, C2orf8	THUMP domain-containing 2	THUMPD2	80745	ENSG00000138050			Thumpd2 (MGI:1919417)
chr2	40112116	40512451	2p23-p22	2p22.1	182305	SLC8A1, NCX1	Solute carrier family 8, member 1 (sodium-calcium exchanger-1)	SLC8A1	6546	ENSG00000183023			Slc8a1 (MGI:107956)
chr2	41500000	47500000	2p21		606407	DEL2p21, C2DELp21	Homozygous 2p21 deletion syndrome				contiguous gene syndrome disrupting SLC3A1 and PREPL genes	Hypotonia-cystinuria syndrome, 606407 (4), Autosomal recessive	
chr2	41500000	83100000	2p21-p12		615654	DFNA58	Deafness, autosomal dominant 58	DFNA58	100359395		between D2S2259 and D2S2114	Deafness, autosomal dominant 58, 615654 (2), Autosomal dominant	
chr2	41500000	47500000	2p21		601694	LEPQTL1, LSL	Leptin serum levels quantitative trait locus 1		7839			[Leptin serum levels QTL1], 601694 (2)	
chr2	41500000	74800000	2p21-p13		608703	SCA25	Spinocerebellar ataxia 25	SCA25	338435			Spinocerebellar ataxia 25, 608703 (2), Autosomal dominant	
chr2	42048020	42058527	2p21	2p21	614150	PKDCC, VLK, SGK493	Protein kinase domain-containing protein, cytoplasmic, mouse, homolog of	PKDCC	91461	ENSG00000162878			Pkdcc (MGI:2147077)
chr2	42169337	42332547	2p22-p21	2p21	607442	EML4, ROPP120	Echinoderm microtubule associated protein like-4	EML4	27436	ENSG00000143924			Eml4 (MGI:1926048)
chr2	42335560	42368956	2p21	2p21	605771	COX7A2L, COX7RP, EB1	Cytochrome c oxidase subunit VIIA, polypeptide 2-like	COX7A2L	9167	ENSG00000115944			Cox7a2l (MGI:106015)
chr2	42442016	42494096	2p21	2p21	606767	KCNG3, KV6.3	Potassium voltage-gated channel, subfamily G, member 3	KCNG3	170850	ENSG00000171126			Kcng3 (MGI:2663923)
chr2	42767086	42801001	2p21	2p21	604521	HAAO, VCRL1	3-hydroxyanthranilate 3,4-dioxygenase	HAAO	23498	ENSG00000162882		Vertebral, cardiac, renal, and limb defects syndrome 1, 617660 (3), Autosomal recessive	Haao (MGI:1349444)
chr2	43222401	43226605	2p21	2p21	612053	ZFP36L2, ERF2, TIS11D	Zinc finger protein 36-like 2	ZFP36L2	678	ENSG00000152518	incorrectly mapped to 6p21.3		Zfp36l2 (MGI:107945)
chr2	43230835	43596045	2p21	2p21	611800	THADA, KIAA1767	Thyroid adenoma-associated gene	THADA	63892	ENSG00000115970			Thada (MGI:3039623)
chr2	43637299	43767986	2p21	2p21	612723	PLEKHH2	Pleckstrin homology domain-containing protein, family H, member 2	PLEKHH2	130271	ENSG00000152527			Plekhh2 (MGI:2146813)
chr2	43774038	43828319	2p25.1-p24.1	2p21	617083	DYNC2LI1, D2LIC, LIC3, SRTD15	Dynein, cytoplasmic 2, light intermediate chain 1	DYNC2LI1	51626	ENSG00000138036		Short-rib thoracic dysplasia 15 with polydactyly, 617088 (3), Autosomal recessive	Dync2li1 (MGI:1913996)
chr2	43806153	43838839	2p21	2p21	605459	ABCG5	ATP-binding cassette, subfamily G, member 5	ABCG5	64240	ENSG00000138075		Sitosterolemia, 210250 (3), Autosomal recessive	Abcg5 (MGI:1351659)
chr2	43831941	43880050	2p21	2p21	605460	ABCG8, GBD4	ATP-binding cassette, subfamily G, member 8	ABCG8	64241	ENSG00000143921		{Gallbladder disease 4}, 611465 (3); Sitosterolemia, 210250 (3), Autosomal recessive	Abcg8 (MGI:1914720)
chr2	43886223	43996004	2p21	2p21	607544	LRPPRC, LRP130, LSFC	Leucine-rich PPR motif-containing protein	LRPPRC	10128	ENSG00000138095		Leigh syndrome, French-Canadian type, 220111 (3), Autosomal recessive	Lrpprc (MGI:1919666)
chr2	44168802	44247329	2p21	2p21	603770	PPM1B	Protein phosphatase, magnesium-dependent, 1, beta isoform	PPM1B	5495	ENSG00000138032	formerly PP2CB		Ppm1b (MGI:101841)
chr2	44275457	44320823	2p16.3	2p21	104614	SLC3A1, ATR1, D2H, NBAT	Solute carrier family 3 (cystine, dibasic and neutral amino acid transporters), member 1	SLC3A1	6519	ENSG00000138079		Cystinuria, 220100 (3), Autosomal recessive, Autosomal dominant	Slc3a1 (MGI:1195264)
chr2	44317606	44361861	2p21	2p21	609557	PREPL, KIAA0436, CMS22	Prolyl endopeptidase-like	PREPL	9581	ENSG00000138078	mutation identified in 1 CMS22 patient	?Myasthenic syndrome, congenital, 22, 616224 (3), Autosomal recessive	Prepl (MGI:2441932)
chr2	44361713	44772591	2p21	2p21	609559	CAMKMT, C2orf34	Calmodulin lysine N-methyltransferase	CAMKMT	79823	ENSG00000143919			Camkmt (MGI:1920832)
chr2	44941897	44946076	2p21	2p21	603714	SIX3, HPE2	Sine oculis homeo box, Drosophila, homolog of, 3	SIX3	6496	ENSG00000138083		Holoprosencephaly 2, 157170 (3), Autosomal dominant; Schizencephaly, 269160 (3)	Six3 (MGI:102764)
chr2	45005184	45009644	2p16-p15	2p21	604994	SIX2	Sine oculis homeo box, Drosophila, homolog of, 2	SIX2	10736	ENSG00000170577			Six2 (MGI:102778)
chr2	45651314	46187989	2p21	2p21	176975	PRKCE, PKCE	Protein kinase C, epsilon	PRKCE	5581	ENSG00000171132			Prkce (MGI:97599)
chr2	46297401	46386702	2p21-p16	2p21	603349	EPAS1, MOP2, HIF2A, ECYT4	Endothelial PAS domain protein 1	EPAS1	2034	ENSG00000116016		Erythrocytosis, familial, 4, 611783 (3)	Epas1 (MGI:109169)
chr2	46511834	46542556	2p21	2p21	617385	ATP6V1E2, ATP6E1	ATPase, H+ transporting, lysosomal, 31kD, V1 subunit E, isoform 1	ATP6V1E2	90423	ENSG00000250565			Atp6v1e2 (MGI:1922165)
chr2	46542408	46584687	2p21	2p21	605857	RHOQ, ARHQ, TC10	Ras-homolog gene family, member Q	RHOQ	23433	ENSG00000119729			Rhoq (MGI:1931553)
chr2	46581273	46617111	2p21-p16	2p21	600153	PIGF	Phosphatidylinositol glycan, class F	PIGF	5281	ENSG00000151665	pseudogene on 5		Pigf (MGI:99462)
chr2	46617171	46630175	2p21	2p21	604594	CRIPT, SSMDF	Cystine-rich PDZ binding protein	CRIPT	9419	ENSG00000119878		Short stature with microcephaly and distinctive facies, 615789 (3), Autosomal recessive	Cript (MGI:1929655)
chr2	46698959	46762787	2p21	2p21	607094	SOCS5, CIS6, KIAA0671	Suppressor of cytokine signaling 5	SOCS5	9655	ENSG00000171150	also signals at 3p22		Socs5 (MGI:2385459)
chr2	46901869	46941854	2p21-p16.3	2p21	607788	MCFD2, F5F8D2	Multiple coagulation factor deficiency protein 2	MCFD2	90411	ENSG00000180398		Factor V and factor VIII, combined deficiency of, 613625 (3)	Mcfd2 (MGI:2183439)
chr2	46916128	47076135	2p21	2p21	609332	TTC7A, TTC7, KIAA1140, MINAT, GIDID	Tetratricopeptide repeat domain 7A	TTC7A	57217	ENSG00000068724		Gastrointestinal defects and immunodeficiency syndrome, 243150 (3), Autosomal recessive	Ttc7 (MGI:1920999)
chr2	47160081	47176935	2p21	2p21	114182	CALM2, LQT15	Calmodulin-2	CALM2	805	ENSG00000143933		Long QT syndrome 15, 616249 (3), Autosomal dominant	
chr2	47369147	47387027	2p21	2p21	185535	EPCAM, ACSTD1, TROP1, M4S1, MIC18, DIAR5, HNPCC8	Epithelial cellular adhesion molecule	EPCAM	4072	ENSG00000119888	previously assigned to 4q	Colorectal cancer, hereditary nonpolyposis, type 8, 613244 (3); Diarrhea 5, with tufting enteropathy, congenital, 613217 (3), Autosomal recessive	Epcam (MGI:106653)
chr2	47403066	47634500	2p22-p21	2p21-p16	609309	MSH2, COCA1, FCC1, HNPCC1	mutS, E. coli, homolog of, 2	MSH2	4436	ENSG00000095002		Colorectal cancer, hereditary nonpolyposis, type 1, 120435 (3), Autosomal dominant; Mismatch repair cancer syndrome, 276300 (3), Autosomal recessive; Muir-Torre syndrome, 158320 (3), Autosomal dominant	Msh2 (MGI:101816)
chr2	47500000	61000000	2p16		609958	ASRT3	Asthma-related traits, susceptibility to, 3		100188801		max lod at rs2063871	{Asthma-related traits, susceptibility to, 3}, 609958 (2)	
chr2	47500000	61000000	2p16		605244	CNC2	Carney complex, type II	CNC2	1257			Carney complex, type II, 605244 (2)	
chr2	47500000	63900000	2p16-p15		604254	DYX3	Dyslexia, susceptibility to, 3	DYX3	11192			{Dyslexia, susceptibility to, 3}, 604254 (2)	
chr2	47500000	63900000	2p16-p15		611276	GLC1H	Glaucoma 1, open angle, H	GLC1H	399564		between D2S123 AND D2S2165	Glaucoma 1, open angle, H, 611276 (2)	
chr2	47500000	61000000	2p16		613549	STQTL24	Stature quantitative trait locus 24		100529223		linked to rs1520446	{Stature QTL 24}, 613549 (2)	
chr2	47520774	47570330	2p22-p21	2p16.3	607366	KCNK12, THIK2	Potassium channel, subfamily K, member 12	KCNK12	56660	ENSG00000184261			Kcnk12 (MGI:2684043)
chr2	47783081	47806953	2p16	2p16.3	600678	MSH6, GTBP, HNPCC5	MutS, E. coli, homolog of, 6	MSH6	2956	ENSG00000116062	0.5 Mb from MSH2	Colorectal cancer, hereditary nonpolyposis, type 5, 614350 (3), Autosomal dominant; Endometrial cancer, familial, 608089 (3); Mismatch repair cancer syndrome, 276300 (3), Autosomal recessive	Msh6 (MGI:1343961)
chr2	47806919	47905792	2p21	2p16.3	607871	FBXO11, FBX11, VIT1, PRMT9	F-box only protein 11	FBXO11	80204	ENSG00000138081	?2p16		Fbxo11 (MGI:2147134)
chr2	48314639	48379294	2p22-p16	2p16.3	143089	HTLF	Human T-cell leukemia virus enhancer factor	FOXN2	3344	ENSG00000170802			Foxn2 (MGI:1347478)
chr2	48530168	48598514	2p16.3	2p16.3	605357	STON1, STN1, SBLF, SALF	Stonin 1	STON1	11037	ENSG00000243244			Ston1 (MGI:1924307)
chr2	48617779	48679608	2p16.3	2p16.3	605358	GTF2A1L, ALF	General transcription factor IIA, 1-like	GTF2A1L	11036	ENSG00000242441			Gtf2a1l (MGI:1919078)
chr2	48686773	48755740	2p21	2p16.3	152790	LHCGR, LHR, LCGR	Luteinizing hormone/choriogonadotropin receptor	LHCGR	3973	ENSG00000138039		Leydig cell adenoma, somatic, with precocious puberty, 176410 (3); Leydig cell hypoplasia with hypergonadotropic hypogonadism, 238320 (3), Autosomal recessive; Leydig cell hypoplasia with pseudohermaphroditism, 238320 (3), Autosomal recessive; Luteinizing hormone resistance, female, 238320 (3), Autosomal recessive; Precocious puberty, male, 176410 (3), Autosomal dominant	Lhcgr (MGI:96783)
chr2	48953160	49154526	2p21-p16	2p16.3	136435	FSHR, ODG1	Follicle stimulating hormone receptor	FSHR	2492	ENSG00000170820		Ovarian dysgenesis 1, 233300 (3), Autosomal recessive; Ovarian hyperstimulation syndrome, 608115 (3), Autosomal dominant; Ovarian response to FSH stimulation, 276400 (3), Autosomal recessive	Fshr (MGI:95583)
chr2	49918504	51032535	2p16.3	2p16.3	600565	NRXN1, PTHSL2, SCZD17	Neurexin 1	NRXN1	9378	ENSG00000179915		Pitt-Hopkins-like syndrome 2, 614325 (3), Autosomal recessive; {Schizophrenia, susceptibility to, 17}, 614332 (3)	Nrxn1 (MGI:1096391)
chr2	53669979	53787008	2p16.2	2p16.2	605760	ASB3	Ankyrin repeat-containing SOCS box protein 3	ASB3	51130	ENSG00000115239			Asb3 (MGI:1929749)
chr2	53767782	53775195	2p16.2	2p16.2	617446	CHAC2	ChaC, E. coli, homolog of, 2	CHAC2	494143	ENSG00000143942			Chac2 (MGI:1915294)
chr2	53786930	53834523	2p16.2	2p16.2	611229	ERLEC1, C2orf30	Erlectin (endoplasmic reticulum lectin 1)	ERLEC1	27248	ENSG00000068912			Erlec1 (MGI:1914003)
chr2	53852912	53860032	2p16	2p16.2	606704	GPR75	G protein-coupled receptor 75	GPR75	10936	ENSG00000119737			Gpr75 (MGI:2441843)
chr2	53864066	53970839	2p16.2	2p16.2	607705	PSME4, PA200, KIAA0077	Proteasome activator subunit 4	PSME4	23198	ENSG00000068878			Psme4 (MGI:2143994)
chr2	53970837	54305299	2p16.2	2p16.2	102595	ACYP2, ACYP	Acylphosphatase 2, muscle type	ACYP2	98	ENSG00000170634			Acyp2 (MGI:1922822)
chr2	54456316	54671445	2p21	2p16.2	182790	SPTBN1	Spectrin, beta, nonerythrocytic-1 (beta-fodrin)	SPTBN1	6711	ENSG00000115306			Sptbn1 (MGI:98388)
chr2	54700000	63900000	2p16.1-p15		612513	DEL2p16.1-p15, C2DELp161-p15	Chromosome 2p16.1-p15 deletion syndrome				contiguous gene deletion syndrome	Chromosome 2p16.1-p15 deletion syndrome, 612513 (4), Isolated cases	
chr2	54700000	61000000	2p16.1		142335	HBFQTL5	Fetal hemoglobin quantitative trait locus 5	HPFH2	3247		associated with rs11886868	[Fetal hemoglobin QTL5], 142335 (2), Autosomal dominant	
chr2	54972188	55137830	2p14-p13	2p16.1	604475	RTN4, NOGO	Neurite outgrowth inhibitor (reticulon 4)	RTN4	57142	ENSG00000115310			Rtn4 (MGI:1915835)
chr2	55231902	55235852	2p16.1	2p16.1	191343	RPS27A, UBA80, HUBCEP80, CEP80, UBCEP1	Ribosomal protein S27a	RPS27A	6233	ENSG00000143947			Rps27a (MGI:1925544)
chr2	55235582	55269313	2p16-p14	2p16.1	603766	MTIF2	Mitochondrial translational initiation factor 2	MTIF2	4528	ENSG00000085760			Mtif2 (MGI:1924034)
chr2	55287816	55419920	2p16.1	2p16.1	609736	CCDC88A, KIAA1212, HKRP1, GIRDIN, APE, GIV, PEHOL	Coiled-coil domain-containing protein 88A	CCDC88A	55704	ENSG00000115355	mutation identified in 1 PEHOL family	?PEHO syndrome-like, 617507 (3), Autosomal recessive	Ccdc88a (MGI:1925177)
chr2	55547291	55618131	2p16.1	2p16.1	610352	PPP4R3B, PP4R3B, SMEK2, KIAA1387	Protein phosphatase 4, regulatory subunit 3, beta	PPP4R3B	57223	ENSG00000275052			Ppp4r3b (MGI:2144474)
chr2	55634062	55693909	2p16.1	2p16.1	610316	PNPT1, OLD35, COXPD13, DFNB70	Polyribonucleotide nucleotidyltransferase 1	PNPT1	87178	ENSG00000138035		Combined oxidative phosphorylation deficiency 13, 614932 (3), Autosomal recessive; Deafness, autosomal recessive 70, 614934 (3), Autosomal recessive	Pnpt1 (MGI:1918951)
chr2	55865961	55924162	2p16	2p16.1	601548	EFEMP1, FBNL, DHRD	EGF-containing fibulin-like extracellular matrix protein 1 (fibrillin-like)	EFEMP1	2202	ENSG00000115380		Doyne honeycomb degeneration of retina, 126600 (3), Autosomal dominant	Efemp1 (MGI:1339998)
chr2	55982966	55983075	2p16.1	2p16.1	615096	MIR217	Micro RNA 217	MIR217	406999				
chr2	55988949	55989058	2p16.1	2p16.1	610944	MIR216, MIRN216	Micro RNA 216	MIR216A	406998				
chr2	57907650	58164000	2p16-p15	2p16.1	602169	VRK2	Vaccinia-related kinase-2	VRK2	7444	ENSG00000028116			Vrk2 (MGI:1917172)
chr2	58159242	58241680	2p16.1	2p16.1	608111	PHF9, FANCL	PHD finger protein 9	FANCL	55120	ENSG00000115392		Fanconi anemia, complementation group L, 614083 (3), Autosomal recessive	Fancl (MGI:1914280)
chr2	60451166	60553497	2p16.1	2p16.1	606557	BCL11A, CTIP1, EVI9, KIAA1809, DILOS	B-cell CLL/lymphoma 11A	BCL11A	53335	ENSG00000119866		Dias-Logan syndrome, 617101 (3), Autosomal dominant	Bcl11a (MGI:106190)
chr2	60756229	60802085	2p16.1	2p16.1	616865	PAPOLG	Poly(A) polymerase, gamma	PAPOLG	64895	ENSG00000115421			Papolg (MGI:2442119)
chr2	60881494	60928170	2p13-p12	2p16.1	164910	REL	Oncogene REL, avian reticuloendotheliosis	REL	5966	ENSG00000162924			Rel (MGI:97897)
chr2	60940217	61019692	2p16.1	2p16-p15	612787	PUS10, DOBI	Pseudouridylate synthase 10	PUS10	150962	ENSG00000162927			Pus10 (MGI:1921717)
chr2	61017676	61051989	2p15	2p15	601789	PEX13, ZWS, NALD, PBD11A, PBD11B	Peroxisome biogenesis factor 13 (peroxin 13)	PEX13	5194	ENSG00000162928		Peroxisome biogenesis disorder 11A (Zellweger), 614883 (3), Autosomal recessive; Peroxisome biogenesis disorder 11B, 614885 (3), Autosomal recessive	Pex13 (MGI:1919379)
chr2	61187454	61470713	2p15	2p15	615295	USP34, KIAA0570	Ubiquitin-specific protease 34	USP34	9736	ENSG00000115464			Usp34 (MGI:109473)
chr2	61477933	61538521	2p16	2p15	602559	XPO1, CRM1	Exportin-1 (required for chromosome region maintenance)	XPO1	7514	ENSG00000082898			Xpo1 (MGI:2144013)
chr2	61800239	61854142	2p15	2p15	613596	FAM161A, RP28	Family with sequence similarity 161, member A	FAM161A	84140	ENSG00000170264		Retinitis pigmentosa 28, 606068 (3)	Fam161a (MGI:1921123)
chr2	61868126	61888670	2p15	2p15	605142	CCT4, CCTD, SRB	Chaperonin containing T-complex polypeptide 1, subunit 4	CCT4	10575	ENSG00000115484			Cct4 (MGI:104689)
chr2	61888722	62136069	2p16-p13	2p15	607238	COMMD1, MURR1	Copper metabolism Murr1 domain-containing 1	COMMD1	150684	ENSG00000173163			Commd1 (MGI:109474)
chr2	62196126	62224730	2p15	2p15	605581	B3GNT2, B3GNT1, B3GNT	Beta-1,3-N-acetylglucosyaminyltransferase 2	B3GNT2	10678	ENSG00000170340			B3gnt2 (MGI:1889505)
chr2	62452777	62511893	2p15	2p15	614950	TMEM17	Transmembrane protein 17	TMEM17	200728	ENSG00000186889			Tmem17 (MGI:2144205)
chr2	62673850	63046486	2p15	2p15	609922	EHBP1, KIAA0903, HPC12	EH domain-binding protein 1	EHBP1	23301	ENSG00000115504		{Prostate cancer, hereditary, 12}, 611868 (3)	Ehbp1 (MGI:2667252)
chr2	63050056	63057830	2p13	2p15	600036	OTX1	Orthodenticle, Drosophila, homolog of, 1	OTX1	5013	ENSG00000115507			Otx1 (MGI:97450)
chr2	63119558	63588798	2p15	2p15	613580	WDPCP, C2orf86, BBS15, CHDTHP	WD repeat-containing planar cell polarity effector	WDPCP	51057	ENSG00000143951	mutation identified in 1 BBS15 family and 1 CHDTHP patient	?Bardet-Biedl syndrome 15, 615992 (3), Autosomal recessive; ?Congenital heart defects, hamartomas of tongue, and polysyndactyly, 217085 (3), Autosomal recessive	Wdpcp (MGI:2144467)
chr2	63588608	63607196	2p16	2p15	154200	MDH1	Malate dehydrogenase, soluble	MDH1	4190	ENSG00000014641	proximal to APOB		Mdh1 (MGI:97051)
chr2	63840963	63891561	2p14-p13	2p15	191760	UGP2, UGPP2	Uridyl diphosphate glucose pyrophosphorylase-2	UGP2	7360	ENSG00000169764			Ugp2 (MGI:2183447)
chr2	63892148	64019421	2p14	2p15-p14	614633	VPS54, VPS54L, WR	Vacuolar protein sorting 54, S. Cerevisiae, homolog of	VPS54	51542	ENSG00000143952			Vps54 (MGI:2178798)
chr2	63900000	71300000	2p14-p13.3		610071	HRPT3	Hyperparathyroidism 3		780919		between D2S2368 and D2S358	Hyperparathyroidism 3, 610071 (2)	
chr2	63900000	74800000	2p14-p13		612853	RLS7	Restless legs syndrome, susceptibility to, 7		100302561		associated with rs2300478	{Restless legs syndrome 7}, 612853 (2)	
chr2	64092651	64144470	2p13.3	2p14	614797	PELI1	Pellino, Drosophila, homolog of, 1	PELI1	57162	ENSG00000197329			Peli1 (MGI:1914495)
chr2	64454192	64461382	2p14	2p14	617902	LGALSL	Galectin-like protein	LGALSL	29094	ENSG00000119862			Lgalsl (MGI:1916114)
chr2	64631620	64751085	2p14	2p14	617851	SERTAD2, TRIPBR2, KIAA0127	SERTA domain-containing protein 2	SERTAD2	9792	ENSG00000179833			Sertad2 (MGI:1931026)
chr2	64988444	65023864	2p14	2p14	600229	SLC1A4, SATT, ASCT1, SPATCCM	Solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	SLC1A4	6509	ENSG00000115902		Spastic tetraplegia, thin corpus callosum, and progressive microcephaly, 616657 (3), Autosomal recessive	Slc1a4 (MGI:2135601)
chr2	65056360	65087007	2p14	2p14	616889	CEP68, KIAA0582	Centrosomal protein, 68kD	CEP68	23177	ENSG00000011523			Cep68 (MGI:2667663)
chr2	65086853	65130300	2p14	2p14	179508	RAB1, RAB1A	RAB1, member RAS oncogene family	RAB1A	5861	ENSG00000138069			Rab1a (MGI:97842)
chr2	65227694	65271252	2p14	2p14	604221	ACTR2, ARP2	Actin-related protein 2	ACTR2	10097	ENSG00000138071			Actr2 (MGI:1913963)
chr2	65307424	65432521	2p14	2p14	609292	SPRED2	Sprouty-related EVH1 domain-containing protein 2	SPRED2	200734	ENSG00000198369			Spred2 (MGI:2150019)
chr2	66435399	66572758	2p14-p13	2p14	601739	MEIS1	Meis1, mouse, homolog of	MEIS1	4211	ENSG00000143995			
chr2	67397309	67410410	2p15-p13	2p14	613196	ETAA1, ETAA16	Ewing tumor-associated antigen 1	ETAA1	54465	ENSG00000143971			Etaa1 (MGI:1915395)
chr2	68042199	68063026	2p13-p12	2p14	606997	C1D, SUNCOR	Nuclear DNA-binding protein C1D	C1D	10438	ENSG00000197223	pseudogene on chr.10		C1d (MGI:1927354)
chr2	68130148	68157559	2q14	2p14	610729	WDR92, LOC116143, MONAD	WD repeat-containing protein 92	WDR92	116143	ENSG00000243667			Wdr92 (MGI:2144224)
chr2	68178856	68252518	2p16-p15	2p14	601302	PPP3R1, CALNB1	Protein phosphatase-3 (formerly 2B), regulatory subunit B (19kD), alpha isoform (calcineurin B, type I)	PPP3R1	5534	ENSG00000221823			Ppp3r1 (MGI:107172)
chr2	68365189	68397452	2p	2p14	173570	PLEK	Pleckstrin	PLEK	5341	ENSG00000115956			Plek (MGI:1860485)
chr2	68400000	74800000	2p13		602966	OFC2	Orofacial cleft-2	OFC2	4964		?relation to TGFA	Orofacial cleft-2, 602966 (2)	
chr2	68400000	74800000	2p13		602404	PARK3	Parkinson disease 3	PARK3	5072			{Parkinson disease 3}, 602404 (2)	
chr2	68400000	74800000	2p13		189800	PEE1, PREG1	Preeclampsia/eclampsia 1	PEE1	5177		?distinct loci at 2p25 and 9p13	Preeclampsia/eclampsia 1, 189800 (2), Autosomal dominant	
chr2	68467558	68580161	2p14	2p13.3	611035	AFPL, C2orf13	Aprataxin- and PNK-like factor	APLF	200558	ENSG00000169621			Aplf (MGI:1919353)
chr2	68643587	68655575	2p13.3	2p13.3	607122	PROKR1, PKR1, GPR73	Prokineticin receptor 1	PROKR1	10887	ENSG00000169621			Prokr1 (MGI:1929676)
chr2	68710509	68826844	2p13	2p13.3	610587	ARHGAP25, KAIA0053	RHO GTPase-activating protein 25	ARHGAP25	9938	ENSG00000163219			Arhgap25 (MGI:2443687)
chr2	68860915	68871516	2p13.3	2p13.3	608748	BMP10	Bone morphogenetic protein 10	BMP10	27302	ENSG00000163217			Bmp10 (MGI:1338820)
chr2	68974572	68980979	2p13.3	2p13.3	606402	GKN1, CA11	Gastrokine 1	GKN1	56287	ENSG00000169605			Gkn1 (MGI:1913533)
chr2	69013143	69249326	2p13.1	2p13.3	606410	ANTXR1, TEM8, ATR, GAPO	Anthrax toxin receptor 1	ANTXR1	84168	ENSG00000169604	mutation identified in 1 HCI patient	GAPO syndrome, 230740 (3), Autosomal recessive; {?Hemangioma, capillary infantile, susceptibility to}, 602089 (3), Autosomal dominant	Antxr1 (MGI:1916788)
chr2	69319768	69387253	2p13	2p13.3	138292	GFPT1, GFAT1, GFPT1L, MSLG, CMS12, CMSTA1	Glutamine-fructose-6-phosphate transaminase	GFPT1	2673	ENSG00000198380		Myasthenia, congenital, 12, with tubular aggregates, 610542 (3), Autosomal recessive	Gfpt1 (MGI:95698)
chr2	69396112	69439648	2p15-p13	2p13.3	608100	NFU1, HIRIP, MMDS1	NFU1 iron-sulfur cluster scaffold, S. cerevisiae, homolog of	NFU1	27247	ENSG00000169599		Multiple mitochondrial dysfunctions syndrome 1, 605711 (3), Autosomal recessive	Nfu1 (MGI:1913290)
chr2	69457994	69643844	2p13.3	2p13.3	616405	AAK1, KIAA1048	Adaptor protein 2-associated kinase 1	AAK1	22848	ENSG00000115977			Aak1 (MGI:1098687)
chr2	69643804	69826476	2p13	2p13.3	106491	ANXA4, ANX4	Annexin A4 (placental anticoagulant protein II)	ANXA4	307	ENSG00000196975			Anxa4 (MGI:88030)
chr2	69915040	69942944	2p13	2p13.3	600021	MAD	MAD protein (MAX-binding protein)	MXD1	4084	ENSG00000059728			Mxd1 (MGI:96908)
chr2	69960088	69962264	2p13.1	2p13.3	611765	ASPRV1, SASP, TAPS, MUNO	Aspartic peptidase, retroviral-like 1	ASPRV1	151516	ENSG00000244617			Asprv1 (MGI:1915105)
chr2	70087452	70089202	2p13-p12	2p13.3	601209	PCBP1	Poly(rC)-binding protein-1	PCBP1	5093	ENSG00000169564			Pcbp1 (MGI:1345635)
chr2	70209443	70248792	2p13	2p13.3	603518	TIA1, WDM	TIA1 cytotoxic granule-associated RNA-binding protein	TIA1	7072	ENSG00000116001		Welander distal myopathy, 604454 (3), Autosomal recessive, Autosomal dominant	Tia1 (MGI:107914)
chr2	70258098	70281184	2p13.3	2p13.3	610995	PCYOX1, PCL1, KIAA0908	Prenylcysteine oxidase 1	PCYOX1	51449	ENSG00000116005			Pcyox1 (MGI:1914131)
chr2	70281361	70293770	2p13.3	2p13.3	603542	SNRPG	Small nuclear ribonucleoprotein polypeptide G	SNRPG	6637	ENSG00000143977			
chr2	70295975	70302087	2p13.3	2p13.3	616275	FAM136A	Family with sequence similarity 136, member A	FAM136A	84908	ENSG00000035141			Fam136a (MGI:1913738)
chr2	70447279	70554014	2p13	2p13.3	190170	TGFA	Transforming growth factor, alpha	TGFA	7039	ENSG00000163235			Tgfa (MGI:98724)
chr2	70656783	70768242	2p14-p13	2p13.3	102681	ADD2	Adducin-2, beta	ADD2	119	ENSG00000075340			Add2 (MGI:87919)
chr2	70777309	70790642	2p12	2p13.3	608697	FIGLA, POF6	Factor in germline alpha, mouse, homolog of	FIGLA	344018	ENSG00000183733		Premature ovarian failure 6, 612310 (3), Autosomal dominant	Figla (MGI:1349421)
chr2	70825247	70860786	2p13	2p13.3	604862	CD207, LANGERIN, CLEC4K	CD207 antigen	CD207	50489	ENSG00000116031	mutation identified in 1 patient	[?Birbeck granule deficiency], 613393 (3)	Cd207 (MGI:2180021)
chr2	70900550	70933916	2p13	2p13.3	604295	VAX2	Ventral anterior homeo box 2	VAX2	25806	ENSG00000116035			Vax2 (MGI:1346018)
chr2	70935867	70965430	2cen-q13	2p13.3	192132	ATP6B1, VPP3	ATPase, H+ transporting, lysosomal, beta polypeptide, 58kD (vacuolar proton pump, subunit 3)	ATP6V1B1	525	ENSG00000116039		Renal tubular acidosis with deafness, 267300 (3), Autosomal recessive	Atp6v1b1 (MGI:103285)
chr2	70977182	70986676	2p13.3	2p13.3	617009	ANKRD53	Ankyrin repeat domain-containing protein 53	ANKRD53	79998	ENSG00000144031			Ankrd53 (MGI:1922555)
chr2	71068277	71078867	2p13.3	2p13.3	606828	NAGK, GNK	N-acetylglucosamine kinase	NAGK	55577	ENSG00000124357			Nagk (MGI:1860418)
chr2	71109675	71130287	2p13.3	2p13.3	608419	MCEE	Methylmalonyl-CoA epimerase	MCEE	84693	ENSG00000124370		Methylmalonyl-CoA epimerase deficiency, 251120 (3), Autosomal recessive	Mcee (MGI:1920974)
chr2	71182737	71227109	2p13.3	2p13.3	611018	PAIP2B	Polyadenylate-binding protein-interacting protein 2B	PAIP2B	400961	ENSG00000124374			Paip2b (MGI:2386865)
chr2	71276592	71435060	2p13.2	2p13.3-p13.2	614349	ZNF638, NP220	Zinc finger protein 638	ZNF638	27332	ENSG00000075292			Zfp638 (MGI:1203484)
chr2	71453153	71686762	2p13.3-p13.1	2p13.2	603009	DYSF, LGMD2B, MMD1	Dysferlin	DYSF	8291	ENSG00000135636		Miyoshi muscular dystrophy 1, 254130 (3), Autosomal recessive; Muscular dystrophy, limb-girdle, type 2B, 253601 (3), Autosomal recessive; Myopathy, distal, with anterior tibial onset, 606768 (3), Autosomal recessive	Dysf (MGI:1349385)
chr2	72129237	72147861	2p13.2	2p13.2	605207	CYP26B1, CYP26A2, P450RAI2, RHFCA	Cytochrome P450, subfamily XXVIB, polypeptide 1	CYP26B1	56603	ENSG00000003137		Craniosynostosis with radiohumeral fusions and other skeletal and craniofacial anomalies, 614416 (3)	Cyp26b1 (MGI:2176159)
chr2	72175983	72826041	2p13.2	2p13.2	607880	EXOC6B, SEC15B, KIAA0919	Exocyst complex component 6B	EXOC6B	23233	ENSG00000144036			Exoc6b (MGI:1923164)
chr2	72887382	72892159	2p14-p12	2p13.2	182125	SPR	Sepiapterin reductase	SPR	6697	ENSG00000116096		Dystonia, dopa-responsive, due to sepiapterin reductase deficiency, 612716 (3), ?Autosomal dominant, Autosomal recessive	Spr (MGI:103078)
chr2	72910948	72936690	2p14-p13	2p13.2	600034	EMX1	Empty spiracles, Drosophila, homolog of, 1	EMX1	2016	ENSG00000135638	close to VAX2		Emx1 (MGI:95387)
chr2	72942035	73071835	2p13	2p13.2	615572	SFXN5	Sideroflexin 5	SFXN5	94097	ENSG00000144040			Sfxn5 (MGI:2137681)
chr2	73073381	73113017	2p13-p12	2p13.2	605536	RAB11RIP5, RIP11, KIAA0857	Rab11 family-interacting protein 5	RAB11FIP5	26056	ENSG00000135631			Rab11fip5 (MGI:1098586)
chr2	73233424	73253021	2p13	2p13.2	605140	CCT7	Chaperonin containing T-complex polypeptide 1, subunit 7	CCT7	10574	ENSG00000135624			Cct7 (MGI:107184)
chr2	73254681	73284448	2p13.2	2p13.2	609108	FBXO41, FBX41, KIAA1940	F-box only protein 41	FBXO41	150726	ENSG00000163013			Fbxo41 (MGI:1261912)
chr2	73290928	73293700	2p13	2p13.2	128992	EGR4, NGFIC	Early growth response-4	EGR4	1961	ENSG00000135625			Egr4 (MGI:99252)
chr2	73385757	73609918	2p13	2p13.1	606844	ALMS1, ALSS, KIAA0328	Alstrom syndrome gene	ALMS1	7840	ENSG00000116127		Alstrom syndrome, 203800 (3), Autosomal recessive	Alms1 (MGI:1934606)
chr2	73640722	73642409	2p13.1-p12	2p13.1	606716	NAT8, TSC510	N-acetyltransferase 8	NAT8	9027	ENSG00000144035			Nat8 (MGI:1915646)
chr2	73700508	73701339	2p13.1-p12	2p13.1	608190	NAT8B, CML2	N-acetyltransferase 8B	NAT8B	51471	ENSG00000204872			Nat8f1 (MGI:1913366)
chr2	73729836	73737405	2p13.1	2p13.1	608680	TPRKB, GAMOS5	TP53RK-binding protein	TPRKB	51002	ENSG00000144034		Galloway-Mowat syndrome 5, 617731 (3), Autosomal recessive	Tprkb (MGI:1917036)
chr2	73762197	73780156	2p13.1	2p13.1	603092	DUSP11, PIR1	Dual specificity phosphatase-11, RNA/RNP complex-interacting	DUSP11	8446	ENSG00000144048			Dusp11 (MGI:1919352)
chr2	73828910	73873660	2p13.1	2p13.1	606247	STAMBP, AMSH, MICCAP	STAM binding protein	STAMBP	10617	ENSG00000124356		Microcephaly-capillary malformation syndrome, 614261 (3), Autosomal recessive	Stambp (MGI:1917777)
chr2	73892965	73919652	2p13.1	2p13.1	102545	ACTG2, ACTA3, VSCM	Actin, gamma-2, smooth muscle, enteric	ACTG2	72	ENSG00000163017		Visceral myopathy, 155310 (3), Autosomal dominant	Actg2 (MGI:104589)
chr2	73926825	73958960	2p13	2p13.1	601465	DGUOK, DGK, MTDPS3, PEOB4, NCPH	Deoxyguanosine kinase, mitochondrial	DGUOK	1716	ENSG00000114956		Mitochondrial DNA depletion syndrome 3 (hepatocerebral type), 251880 (3), Autosomal recessive; Portal hypertension, noncirrhotic, 617068 (3), Autosomal recessive; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 4, 617070 (3), Autosomal recessive	Dguok (MGI:1351602)
chr2	73982035	74135393	2p13.1	2p13.1	613555	TET3, KIAA0401	TET oncogene family, member 3	TET3	200424	ENSG00000187605			Tet3 (MGI:2446229)
chr2	74135400	74147911	2p13.1	2p13.1	613183	BOLA3, MMDS2	BolA, E. coli, homolog of, 3	BOLA3	388962	ENSG00000163170		Multiple mitochondrial dysfunctions syndrome 2 with hyperglycinemia, 614299 (3), Autosomal recessive	Bola3 (MGI:1925903)
chr2	74216241	74343406	2p13	2p13.1	606757	SLC4A5, NBC4	Solute carrier family 4, sodium bicarbonate cotransporter, member 5	SLC4A5	57835	ENSG00000188687			Slc4a5 (MGI:2443220)
chr2	74361153	74392086	2p13	2p13.1	601143	DCTN1, HMN7B	Dynactin 1 (p150, glued, Drosophila, homolog of)	DCTN1	1639	ENSG00000204843		{Amyotrophic lateral sclerosis, susceptibility to}, 105400 (3), Autosomal recessive, Autosomal dominant; Neuropathy, distal hereditary motor, type VIIB, 607641 (3), Autosomal dominant; Perry syndrome, 168605 (3), Autosomal dominant	Dctn1 (MGI:107745)
chr2	74425860	74441932	2p13	2p13.1	602288	RTKN	Rhotekin	RTKN	6242	ENSG00000114993			Rtkn (MGI:107371)
chr2	74455022	74457959	2p13	2p13.1	616456	INO80B, PAPA1, HMGA1L4	INO80 complex, subunit B	INO80B	83444	ENSG00000115274			Ino80b (MGI:1917270)
chr2	74458399	74460890	2p12	2p13.1	606961	WBP1	WW domain-binding protein 1	WBP1	23559	ENSG00000239779			Wbp1 (MGI:104710)
chr2	74461056	74465409	2p13.1	2p13.1	601336	MOGS, GCS1, CDG2B	Mannosyl-oligosaccharide glucosidase	MOGS	7841	ENSG00000115275		Congenital disorder of glycosylation, type IIb, 606056 (3), Autosomal recessive	Mogs (MGI:1929872)
chr2	74471957	74472814	2p12	2p13.1	611857	MRPL53	Mitochondrial ribosomal protein L53	MRPL53	116540	ENSG00000204822	pseudogene on 1		Mrpl53 (MGI:1915749)
chr2	74497516	74503315	2p13	2p13.1	607164	LBX2	Lady bird-like homeo box 2	LBX2	85474	ENSG00000179528			Lbx2 (MGI:1342288)
chr2	74514468	74517147	2p13.1-p12	2p13.1	604240	TLX2, HOX11L1	T-cell leukemia, homeobox 2	TLX2	3196	ENSG00000115297			Tlx2 (MGI:1350935)
chr2	74526647	74529896	2p13	2p13.1	602434	AUP1	Ancient ubiquitous protein 1	AUP1	550	ENSG00000115307			Aup1 (MGI:107789)
chr2	74529404	74533555	2p12	2p13.1	606441	HTRA2, OMI, PARK13, PRSS25, MGCA8	HTRA serine peptidase 2	HTRA2	27429	ENSG00000115317		3-methylglutaconic aciduria, type VIII, 617248 (3), Autosomal recessive; {Parkinson disease 13}, 610297 (3)	Htra2 (MGI:1928676)
chr2	74532257	74555718	2p13.3	2p13.1	607163	LOXL3	Lysyl oxidase-like 3	LOXL3	84695	ENSG00000115318			Loxl3 (MGI:1337004)
chr2	74549019	74557550	2p13	2p13.1	602919	DOK1	Downstream of tyrosine kinase 1	DOK1	1796	ENSG00000115325			Dok1 (MGI:893587)
chr2	74654227	74699012	2p13	2p13.1	603706	SEMAW	Semaphorin W	SEMA4F	10505	ENSG00000135622			Sema4f (MGI:1340055)
chr2	74800000	83100000	2p12		607304	CTRCT27, CCNP	Cataract 27, nuclear progressive		266979		near D2S2333	Cataract 27, nuclear progressive, 607304 (2)	
chr2	74800000	91800000	2p12-p11.2		613564	DEL2p12p11.2, C2DELp12p11.2	Chromosome 2p12-p11.2 deletion syndrome				contiguous gene deletion syndrome	Chromosome 2p12-p11.2 deletion syndrome, 613564 (4)	
chr2	74800000	83100000	2p12		608394	DFNA43	Deafness, autosomal dominant 43	DFNA43	192676		max lod at D2S139	Deafness, autosomal dominant 43, 608394 (2), Autosomal dominant	
chr2	74800000	147900000	2p12-q22		139900	HSR	Hand skill, relative		338386			[Handedness], 139900 (2), Autosomal dominant	
chr2	74800000	83100000	2p12		146970	IGKJ@	Immunoglobulin kappa light chain joining gene cluster		7842		5 genes		
chr2	74800000	83100000	2p12		146980	IGKV@	Immunoglobulin kappa light chain variable gene cluster		3519		25+ genes in 4 classes; orphon gene 1.5Mb telomeric of IGKC		
chr2	74832654	74893353	2p12	2p12	601125	HK2	Hexokinase-2, muscle	HK2	3099	ENSG00000159399	no recombination with TGFA		Hk2 (MGI:1315197)
chr2	74958642	74969731	2p12	2p12	607269	POLE4	Polymerase, DNA, epsilon-4	POLE4	56655	ENSG00000115350			Pole4 (MGI:1914229)
chr2	75046462	75199518	2p11	2p12	162323	TACR1, TAC1R, NK1R	Tachykinin receptor 1 (substance P receptor; neurokinin-1 receptor)	TACR1	6869	ENSG00000115353			Tacr1 (MGI:98475)
chr2	75646782	75662207	2p11.2-q11.2	2p12	611832	MRPL19, MRPL15, KIAA0104	Mitochondrial ribosomal protein L19	MRPL19	9801	ENSG00000115364			Mrpl19 (MGI:1926274)
chr2	75655605	75711641	2p11.2-p11.1	2p12	189901	C2orf3, TCF9, GCF	GC factor	GCFC2	6936	ENSG00000005436			Gcfc2 (MGI:2141656)
chr2	76747722	77522432	2p12	2p12	610870	LRRTM4	Leucine-rich repeat transmembrane protein 4	LRRTM4	80059	ENSG00000176204			Lrrtm4 (MGI:2389180)
chr2	79025663	79028503	2p12	2p12	609933	REG3G, PAP1B	Regenerating islet-derived 3-gamma	REG3G	130120	ENSG00000143954			Reg3g (MGI:109406)
chr2	79085022	79088023	2p12	2p12	167771	REGL, PSPS2	Regenerating islet-derived, rat, homolog-like (pancreatic stone protein-like; pancreatic thread protein-like)	REG1B	5968	ENSG00000172023			Reg2 (MGI:97896)
chr2	79120457	79123418	2p12	2p12	167770	REG1A, PSPS1, REG	Regenerating islet-derived 1 alpha (pancreatic stone protein, pancreatic thread protein)	REG1A	5967	ENSG00000115386			Reg1 (MGI:97895)
chr2	79157005	79159753	2p12	2p12	167805	PAP	Pancreatitis-associated protein	REG3A	5068	ENSG00000172016			Reg3b (MGI:97478)
chr2	79505053	80648867	2p12-p11.1	2p12	114025	CTNNA2, CAPR, CTNR	Catenin, alpha-2 (cadherin-associated protein, related)	CTNNA2	1496	ENSG00000066032			Ctnna2 (MGI:88275)
chr2	80301877	80304427	2p12	2p12	610867	LRRTM1	Leucine-rich repeat transmembrane protein 1	LRRTM1	347730	ENSG00000162951			Lrrtm1 (MGI:2389173)
chr2	84423522	84459461	2p11.2	2p11.2	611224	SUCLG1, SUCLA1, MTDPS9	Succinate-CoA ligase, alpha subunit	SUCLG1	8802	ENSG00000163541		Mitochondrial DNA depletion syndrome 9 (encephalomyopathic type with methylmalonic aciduria), 245400 (3), Autosomal recessive	Suclg1 (MGI:1927234)
chr2	84459571	84819588	2p11.2	2p11.2	603336	DNAH6, HL2	Dynein, axonemal, heavy chain 6	DNAH6	1768	ENSG00000115423			Dnah6 (MGI:107744)
chr2	84821649	84881974	2p11.2	2p11.2	614912	TRABD2A, TIKI1	TRAB domain-containing protein 2A	TRABD2A	129293	ENSG00000186854			
chr2	84905638	84906674	2p11.2	2p11.2	188399	TMSB10	Thymosin, beta-10	TMSB10	9168	ENSG00000034510			
chr2	84971107	85059471	2p11.2	2p11.2	614719	KCMF1, DEBT91, FIGC	Potassium channel modulatory factor 1	KCMF1	56888	ENSG00000176407			Kcmf1 (MGI:1921537)
chr2	85133459	85310387	2p11.2	2p11.2	604652	TCF7L1	Transcription factor 7-like 1	TCF7L1	83439	ENSG00000152284			Tcf7l1 (MGI:1202876)
chr2	85318017	85328295	2p11.2	2p11.2	603062	TGOLN2, TGN46, TGN38	Trans-golgi network protein 2, 46kD	TGOLN2	10618	ENSG00000152291			
chr2	85341954	85354697	2p11.2	2p11.2	617597	RETSAT	Retinol saturase	RETSAT	54884	ENSG00000042445			Retsat (MGI:1914692)
chr2	85354393	85391751	2p11.3	2p11.2	615427	ELMOD3, RBED1, DFNB88	ELMO/CED12 domain-containing protein 3	ELMOD3	84173	ENSG00000115459	one family identified with mutation	?Deafness, autosomal recessive 88, 615429 (3), Autosomal recessive	Elmod3 (MGI:2445168)
chr2	85394747	85418466	2cen-q24	2p11.2	153615	CAPG	Capping protein (actin filament), gelsolin-like	CAPG	822	ENSG00000042493			Capg (MGI:1098259)
chr2	85537466	85538885	2p11.2	2p11.2	616350	PARTICL	Promoter of MAT2A antisense radiation-induced circulating long noncoding RNA	PARTICL	100630918		overlaps promoter of MAT2A on opposite strand		
chr2	85538977	85545279	2p11.2	2p11.2	601468	MAT2A, MATA2, SAMS2	Methionine adenosyltransferase II, alpha	MAT2A	4144	ENSG00000168906			Mat2a (MGI:2443731)
chr2	85544719	85561533	2p12	2p11.2	137167	GGCX, VKCFD1	Gamma-glutamyl carboxylase	GGCX	2677	ENSG00000115486		Pseudoxanthoma elasticum-like disorder with multiple coagulation factor deficiency, 610842 (3); Vitamin K-dependent clotting factors, combined deficiency of, 1, 277450 (3), Autosomal recessive	Ggcx (MGI:1927655)
chr2	85577490	85582032	2p12-p11.2	2p11.2	603177	VAMP8	Vesicle-associated membrane protein 8	VAMP8	8673	ENSG00000118640			Vamp8 (MGI:1336882)
chr2	85584407	85593387	2p11.2	2p11.2	607029	VAMP5	Vesicle-associated membrane protein 5 (myobrevin)	VAMP5	10791	ENSG00000168899			Vamp5 (MGI:1858622)
chr2	85593822	85597707	2p11.2	2p11.2	612490	RNF181	Ring finger protein 181	RNF181	51255	ENSG00000168894			Rnf181 (MGI:1913760)
chr2	85598546	85602698	2p11.2	2p11.2	616757	TMEM150A, TMEM150	Transmembrane protein 150A	TMEM150A	129303	ENSG00000168890			Tmem150a (MGI:2385244)
chr2	85602841	85649283	2p11.2	2p11.2	611594	USP39, SAD1	Ubiquitin-specific protease 39	USP39	10713	ENSG00000168883			Usp39 (MGI:107622)
chr2	85657316	85668740	2p12-p11.2	2p11.2	178640	SFTPB, SFTB3, SMDP1	Pulmonary surfactant-associated protein B, 18kD	SFTPB	6439	ENSG00000168878		Surfactant metabolism dysfunction, pulmonary, 1, 265120 (3), Autosomal recessive	Sftpb (MGI:109516)
chr2	85694290	85698853	2p12-q11	2p11.2	188855	GNLY, D2S69E, TLA519	Granulysin (T-lymphocyte activation gene 519)	GNLY	10578	ENSG00000115523			
chr2	85839132	85889033	2p11.2	2p11.2	604402	SIAT9, ST3GALV, SPDRS	Sialyltransferase 9	ST3GAL5	8869	ENSG00000115525		Salt and pepper developmental regression syndrome, 609056 (3), Autosomal recessive	St3gal5 (MGI:1339963)
chr2	86020215	86106154	2p11.2	2p11.2	616404	POLR1A, RPA194, AFDCIN	Polymerase I, RNA, subunit A	POLR1A	25885	ENSG00000068654		Acrofacial dysostosis, Cincinnati type, 616462 (3), Autosomal dominant	Polr1a (MGI:1096397)
chr2	86106181	86142156	2p11.2	2p11.2	614918	PTCD3	Pentatricopeptide repeat domain-containing protein 3	PTCD3	55037	ENSG00000132300			Ptcd3 (MGI:1917206)
chr2	86143931	86195769	2p11.2	2p11.2	600378	IMMT, HMP	Inner membrane protein, mitochondrial (mitofilin)	IMMT	10989	ENSG00000132305	pseudogene on chr.21		Immt (MGI:1923864)
chr2	86199432	86213797	2p11.2	2p11.2	611841	MRPL35	Mitochondrial ribosomal protein L35	MRPL35	51318	ENSG00000132313	pseudogenes on 6, 10, and X		Mrpl35 (MGI:1913473)
chr2	86213992	86338082	2p11.2	2p11.2	609139	REEP1, C2orf23, SPG31, HMN5B	Receptor expression-enhancing protein 1	REEP1	65055	ENSG00000068615	mutation identified in 1 HMN5B family	?Neuronopathy, distal hereditary motor, type VB, 614751 (3), Autosomal dominant; Spastic paraplegia 31, autosomal dominant, 610250 (3), Autosomal dominant	Reep1 (MGI:1098827)
chr2	86440646	86492715	2p11.2	2p11.2	611512	KDM3A, JMJD1A, JHDM2A, TSGA, KIAA0742	Lysine-specific demethylase 3A	KDM3A	55818	ENSG00000115548			Kdm3a (MGI:98847)
chr2	86503429	86563496	2p24	2p11.2	610052	VPS24, CHMP3, NEDF	Vacuolar protein sorting 24, yeast, homolog of	CHMP3	51652	ENSG00000115561			Chmp3 (MGI:1913950)
chr2	86603392	86623876	2p11.2	2p11.2	602507	ZFP103, KF1	Zinc finger protein 103, mouse, homolog of	RNF103	7844	ENSG00000239305			Rnf103 (MGI:109483)
chr2	86784604	86808395	2p12	2p11.2	186910	CD8A	CD8 antigen, alpha polypeptide  (p32)	CD8A	925	ENSG00000153563	distal to IGK	CD8 deficiency, familial, 608957 (3), Autosomal recessive	Cd8a (MGI:88346)
chr2	86815336	86861923	2p12	2p11.2	186730	CD8B1, CD8B	CD8 antigen, beta polypeptide 1 (p37)	CD8B	926	ENSG00000172116	pseudogene, CD8B2, on 2q12		Cd8b1 (MGI:88347)
chr2	86913576	87013975	2p11.2	2p11.2	612704	RGPD1, RGP1	RANBP2-like and GRIP domain-containing protein 1	RGPD1	400966	ENSG00000187627			Ranbp2 (MGI:894323)
chr2	87010463	87021845	2p11-q11	2p11.2	173340	PLGLB1, PLGL, PRGB	Plasminogen-like B1	PLGLB1	5343	ENSG00000183281			
chr2	87757197	87992818	2p11.2	2p11.2	612705	RGPD2, RGP2	RANBP2-like and GRIP domain-containing protein 2	RGPD2	729857	ENSG00000185304			Ranbp2 (MGI:894323)
chr2	88067779	88113383	2p11.2	2p11.2	606846	SMYD1, BOP, ZMYND18	SET and MYND domain-containing protein 1	SMYD1	150572	ENSG00000115593			Smyd1 (MGI:104790)
chr2	88122981	88128130	2p11	2p11.2	134650	FABP1	Fatty acid-binding protein, liver	FABP1	2168	ENSG00000163586			Fabp1 (MGI:95479)
chr2	88170294	88186636	2p11.2	2p11.2	611261	THNSL2, THS2	Threonine synthase-like 2	THNSL2	55258	ENSG00000144115			Thnsl2 (MGI:3041254)
chr2	88446786	88452534	2p11.2	2p11.2	612351	FOXI3	Forkhead box I3	FOXI3	344167	ENSG00000214336			Foxi3 (MGI:3511278)
chr2	88556739	88627575	2p12	2p11.2	604032	EIF2AK3, PEK, PERK, WRS	Eukaryotic translation initiation factor 2-alpha kinase 3	EIF2AK3	9451	ENSG00000172071		Wolcott-Rallison syndrome, 226980 (3), Autosomal recessive	Eif2ak3 (MGI:1341830)
chr2	88691657	88750934	2p11.2	2p11.2	180430	RPIA, RPI, RPIAD	Ribose 5-phosphate isomerase A	RPIA	22934	ENSG00000153574	mutation identified in 1 RPAID patient	?Ribose 5-phosphate isomerase deficiency, 608611 (3), Autosomal recessive	Rpia (MGI:103254)
chr2	88832221	88833330	2p12	2p11.2	146780	IGKDEL	Immunoglobulin kappa polypeptide deleting element	IGKDEL	3515				
chr2	88857360	88857682	2p12	2p11.2	147200	IGKC, IGKCD	Immunoglobulin kappa constant region	IGKC	3514			Kappa light chain deficiency, 614102 (3), Autosomal recessive	
chr2	93900000	242193529	2q		606053	AUTS5	Autism, susceptibility to, 5		94313		max lod at D2S188	{Autism susceptibility 5}, 606053 (2), Autosomal recessive, Autosomal dominant	
chr2	93900000	108700000	2q11-q12		612006	CELIAC8	Celiac disease, susceptibility to, 8		100188870		associated with rs917997 and rs13015714	{Celiac disease, susceptibility to, 8}, 612006 (2)	
chr2	93900000	242193529	2q		606963	COPD	Pulmonary disease, chronic obstructive, severe early-onset		260431		?SERPINE2	Pulmonary disease, chronic obstructive, severe early-onset, 606963 (2)	
chr2	93900000	112200000	2cen-q13		606689	GLC1B	Glaucoma 1, open angle, B (adult-onset)	GLC1B	2722			Glaucoma 1B, primary open angle, adult onset, 606689 (2)	
chr2	93900000	129100000	2q11-q14		611897	NNO3	Nanophthalmos 3		100187717		max lod at D2S2265	Nanophthalmos 3, 611897 (2)	
chr2	95025654	95053991	2cen-q13	2q11.1	188860	MAL	T-lymphocyte maturation-associated protein	MAL	4118	ENSG00000172005			Mal (MGI:892970)
chr2	95085390	95122026	2p11.2-q11.2	2q11.1	611972	MRPS5	Mitochondrial ribosomal protein S5	MRPS5	64969	ENSG00000144029			Mrps5 (MGI:1924971)
chr2	95165416	95184316	2q11.2	2q11.1	194500	ZNF2	Zinc finger protein-2	ZNF2	7549	ENSG00000275111			Zfp661 (MGI:1919430)
chr2	95274447	95291319	2q11.1	2q11.1	617160	PROM2, PROML2	Prominin 2	PROM2	150696	ENSG00000155066			Prom2 (MGI:2138997)
chr2	95297323	95386076	2q11.1	2q11.1	604662	KCNIP3, KCHIP3, CSEN, DREAM	Potassium channel-interacting protein 3	KCNIP3	30818	ENSG00000115041			Kcnip3 (MGI:1929258)
chr2	96021945	96035973	2q11.2	2q11.2	616431	GPAT2	Glycerol-3-phosphate acyltransferase 2, mitochondrial	GPAT2	150763	ENSG00000186281			Gpat2 (MGI:2684962)
chr2	96112874	96116244	2q11.2	2q11.2	104260	ADRA2B, ADRA2L1, FAME2	Adrenergic, alpha-2B-, receptor	ADRA2B	151	ENSG00000274286		Epilepsy, myoclonic, familial adult, 2, 607876 (3), Autosomal dominant	Adra2b (MGI:87935)
chr2	96143165	96145467	2q11	2q11.2	603068	DUSP2, PAC1	Dual-specificity phosphatase-2	DUSP2	1844	ENSG00000158050			Dusp2 (MGI:101911)
chr2	96184858	96208845	2q11.2	2q11.2	616712	STARD7, GTT1	START domain-containing protein 4	STARD7	56910	ENSG00000084090			Stard7 (MGI:2139090)
chr2	96248513	96266012	2q11	2q11.2	613403	TMEM127	Transmembrane protein 127	TMEM127	55654	ENSG00000135956		{Pheochromocytoma, susceptibility to}, 171300 (3), Autosomal dominant	Tmem127 (MGI:1916720)
chr2	96266145	96274178	2q11.2	2q11.2	604333	CIAO1, WDR39	WD repeat-containing protein CIAO1	CIAO1	9391	ENSG00000144021			Ciao1 (MGI:1346998)
chr2	96274335	96305568	2q11.2	2q11.2	601664	SNRNP200, ASCC3L1, KIAA0788, RP33	Small nuclear ribonucleoprotein 200kD (U5)	SNRNP200	23020	ENSG00000144028		Retinitis pigmentosa 33, 610359 (3), Autosomal dominant	Snrnp200 (MGI:2444401)
chr2	96335740	96377094	2q11.2	2q11.2	602332	BRRN1	Barren, Drosophila, homolog of, 1	NCAPH	23397	ENSG00000121152			Ncaph (MGI:2444777)
chr2	96497642	96508156	2p11	2q11.2	617206	NEURL3, LINCR	Neuralized E3 ubiquitin protein ligase 3	NEURL3	93082	ENSG00000163121			Neurl3 (MGI:2429944)
chr2	96536718	96552637	2q11.2	2q11.2	611583	ARID5A, MRF1	AT-rich interactive domain-containing protein 5A	ARID5A	10865	ENSG00000196843			Arid5a (MGI:2443039)
chr2	96593154	96638378	2q11.2	2q11.2	617742	KANSL3, NSL3, KIAA1310	Kat8 regulatory NSL complex, subunit 3	KANSL3	55683	ENSG00000114982			Kansl3 (MGI:1918055)
chr2	96705928	96740091	2q11.2	2q11.2	609552	LMAN2L, VIPL, MRT52	LMAN2-like protein	LMAN2L	81562	ENSG00000114988	mutation identified in 1 MRT52 family	?Mental retardation, autosomal recessive, 52, 616887 (3), Autosomal recessive	Lman2l (MGI:2443010)
chr2	96760901	96811890	2q11.2	2q11.2	607805	CNNM4, ACDP4	Cyclin M4	CNNM4	26504	ENSG00000158158		Jalili syndrome, 217080 (3), Autosomal recessive	Cnnm4 (MGI:2151060)
chr2	96814945	96837108	2q11.2	2q11.2	607804	CNNM3, ACDP3	Cyclin M3	CNNM3	26505	ENSG00000168763	previously assigned to 2p12-p11.2		Cnnm3 (MGI:2151055)
chr2	96837913	96844020	2p11.2-q11.1	2q11.2	610736	ANKRD23, DARP	Ankyrin repeat domain-containing protein 23	ANKRD23	200539	ENSG00000163126			Ankrd23 (MGI:1925571)
chr2	96859735	96870942	5p15.3	2q11.2	604462	SEMA4C, SEMAF, KIAA1739	Semaphorin 4C	SEMA4C	54910	ENSG00000168758			Sema4c (MGI:109252)
chr2	97646057	97648193	2cen-q13	2q11.2	123866	COX5B	Cytochrome c oxidase, subunit Vb	COX5B	1329	ENSG00000135940	7 pseudogenes on 4, 6, 7, 11, 12, 13, and 22		
chr2	97655938	97664097	2q11.1-q11.2	2q11.2	605144	ACTR1B, ARP1B, CTRN2	Actin-related protein 1B	ACTR1B	10120	ENSG00000115073			Actr1b (MGI:1917446)
chr2	97712029	97744326	2q12	2q11.2	176947	ZAP70, SRK, ADMIO2, IMD48	Zeta-chain associated protein kinase, 70kD (syk-related tyrosine kinase)	ZAP70	7535	ENSG00000115085		Autoimmune disease, multisystem, infantile-onset, 2, 617006 (3), Autosomal recessive; Immunodeficiency 48, 269840 (3), Autosomal recessive	Zap70 (MGI:99613)
chr2	97756335	97996181	2q11.2	2q11.2	615659	TMEM131, KIAA0257, CC28	Transmembrane protein 131	TMEM131	23505	ENSG00000075568			Tmem131 (MGI:1927110)
chr2	98087131	98330681	2q11.2	2q11.2	614884	VWA3B, SCAR22	von Willebrand factor A domain-containing protein 3B	VWA3B	200403	ENSG00000168658	mutation identified in 1 SCAR22 family	?Spinocerebellar ataxia, autosomal recessive 22, 616948 (3), Autosomal recessive	Vwa3b (MGI:1918103)
chr2	98346154	98399153	2q11	2q11.2	600053	CNGA3, CNG3, ACHM2	Cyclic nucleotide-gated channel, alpha-3	CNGA3	1261	ENSG00000144191		Achromatopsia 2, 216900 (3), Autosomal recessive	Cnga3 (MGI:1341818)
chr2	98444537	98594067	2q11.2	2q11.2	600916	INPP4A, INPP4	Inositol polyphosphate-4-phosphatase, type I, 107kD	INPP4A	3631	ENSG00000040933			Inpp4a (MGI:1931123)
chr2	98599322	98608517	2q11.2	2q11.2	613920	COA5, C2orf64, PET191, CEMCOX3	Cytochrome c oxidase assembly factor 5	COA5	493753	ENSG00000183513	mutation identified in 1 CEMCOX3 family	?Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 3, 616500 (3), Autosomal recessive	Coa5 (MGI:1923428)
chr2	98608547	98618514	2q11.2	2q11.2	617826	UNC50, UNCL, GMH1	Unc50, inner nuclear membrane RNA-binding protein	UNC50	25972	ENSG00000115446			Unc50 (MGI:1914637)
chr2	98619105	98731125	2q12	2q11.2	604623	MGAT4A	Alpha-1,3-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme A	MGAT4A	11320	ENSG00000071073			Mgat4a (MGI:2662992)
chr2	98997260	99154965	2q11.2	2q11.2	607166	TSGA10	Testis-specific protein 10	TSGA10	80705	ENSG00000135951			Tsga10 (MGI:2685063)
chr2	99154954	99163156	2q11.2	2q11.2	610284	LIPT1, LIPT1D	Lipoyltransferase 1	LIPT1	51601	ENSG00000144182		Lipoyltransferase 1 deficiency, 616299 (3), Autosomal recessive	Lipt1 (MGI:3645211)
chr2	99181078	99199556	2q11.2	2q11.2	611838	MRPL30, MRPL28	Mitochondrial ribosomal protein L30	MRPL30	51263	ENSG00000185414			Mrpl30 (MGI:1333820)
chr2	99242245	99260014	2q11.2	2q11.2	616547	LYG2, LYSG2	Lysozyme G-like 2	LYG2	254773	ENSG00000185674			Lyg2 (MGI:2685622)
chr2	99306183	99336396	2q11.2	2q11.2	612564	TXNDC9, PHLP3	Thioredoxin domain-containing protein 9	TXNDC9	10190	ENSG00000115514			Txndc9 (MGI:2138153)
chr2	99400474	99490122	2q11.2	2q11.2	606134	REV1L, REV1	Rev1, S. cerevisiae, homolog of	REV1	51455	ENSG00000135945			Rev1 (MGI:1929074)
chr2	99545860	100142582	2q11.2-q12	2q11.2	601464	LAF4	Lymphoid nuclear protein related to AF4	AFF3	3899	ENSG00000144218			Aff3 (MGI:106927)
chr2	100391859	100417667	2q11.2	2q11.2	606376	CHST10, HNK1ST	Carbohydrate sulfotransferase 10	CHST10	9486	ENSG00000115526			Chst10 (MGI:2138283)
chr2	100562955	100577471	2q11.2	2q11.2	611678	PDCL3, PHLP3, VIAF	Phosducin-like 3	PDCL3	79031	ENSG00000115539			Pdcl3 (MGI:1916083)
chr2	100820150	100996828	2q13	2q11.2	603347	NPAS2, MOP4	Neuronal PAS domain protein 2	NPAS2	4862	ENSG00000170485			Npas2 (MGI:109232)
chr2	101002228	101019692	2q11.2	2q11.2	617415	RPL31	Ribosomal protein L31	RPL31	6160	ENSG00000071082			Rpl31 (MGI:2149632)
chr2	101697702	101894689	2q11.2	2q11.2	604666	MAP4K4, HGK, NIK, KIAA0687	Mitogen-activated protein kinase kinase kinase kinase 4	MAP4K4	9448	ENSG00000071054			Map4k4 (MGI:1349394)
chr2	101991804	102028543	2q12-q22	2q11.2	147811	IL1R2, IL1RB	Interleukin-1 receptor, type II	IL1R2	7850	ENSG00000115590			Il1r2 (MGI:96546)
chr2	102069637	102179873	2q12	2q11.2-q12.1	147810	IL1R1, IL1RA	Interleukin-1 receptor, type I	IL1R1	3554	ENSG00000115594			Il1r1 (MGI:96545)
chr2	102100000	129100000	2q12-q14		147185	IGKV1OR2-108, IGO1	Immunoglobulin orphon (transposed element) 1	IGKV1OR2-108	28862				
chr2	102100000	105300000	2q12.1		617071	LNC13	Long noncoding RNA 13						
chr2	102186972	102242909	2q12	2q12.1	604512	IL1RL2, IL1RRP2	Interleukin 1 receptor-like 2	IL1RL2	8808	ENSG00000115598			Il1rl2 (MGI:1913107)
chr2	102311501	102352366	2q11.2	2q12.1	601203	IL1RL1	Interleukin 1 receptor-like 1	IL1RL1	9173	ENSG00000115602			Il1rl1 (MGI:98427)
chr2	102355800	102398776	2q12	2q12.1	604494	IL18R1, IL1RRP	Interleukin 18 receptor 1	IL18R1	8809	ENSG00000115604			Il18r1 (MGI:105383)
chr2	102418549	102452567	2q12	2q12.1	604509	IL18RAP, ACPL	Interleukin 18 receptor accessory protein	IL18RAP	8807	ENSG00000115607			Il18rap (MGI:1338888)
chr2	102473281	102533973	2q12.1	2q12.1	600531	SLC9A4, NHE4	Solute carrier family 9 (sodium/hydrogen exchanger), member 4	SLC9A4	389015	ENSG00000180251			Slc9a4 (MGI:105074)
chr2	102619533	102711349	2q11.2	2q12.1	600530	SLC9A2	Solute carrier family 9 (sodium/hydrogen exchanger), member 2	SLC9A2	6549	ENSG00000115616			Slc9a2 (MGI:105075)
chr2	104854067	104858573	2q12.1	2q12.1	602480	POU3F3	POU domain, class 3, transcription factor-3	POU3F3	5455	ENSG00000198914	previously mapped to 3p14.2		Pou3f3 (MGI:102564)
chr2	105037468	105099959	2q12.1	2q12.1	611975	MRPS9	Mitochondrial ribosomal protein S9	MRPS9	64965	ENSG00000135972			Mrps9 (MGI:1916777)
chr2	105241742	105243466	2q11.2-q12	2q12.1	604838	GPR45	G protein-coupled receptor 45	GPR45	11250	ENSG00000135973			Gpr45 (MGI:2135882)
chr2	105249422	105329713	2q12.1	2q12.1-q12.2	606237	TGFBRAP1, TRAP1	Transforming growth factor-beta receptor-associated protein 1	TGFBRAP1	9392	ENSG00000135966			Tgfbrap1 (MGI:2447427)
chr2	105360825	105438772	2q12-q14	2q12.2	602633	FHL2, DRAL	Four and a half LIM domains-2 (Down-regulated in rhabdomyosarcoma LIM protein)	FHL2	2274	ENSG00000115641			Fhl2 (MGI:1338762)
chr2	105744648	105894273	2q12	2q12.2	604930	NCK2	NCK adaptor protein 2	NCK2	8440	ENSG00000071051			Nck2 (MGI:1306821)
chr2	106063289	106078154	2q14.1-q14.3	2q12.2	611752	C2orf40, ECRG4	Esophageal cancer-related gene 4	C2orf40	84417	ENSG00000119147			1500015O10Rik (MGI:1926146)
chr2	106093302	106194338	2q12	2q12.2	609749	UXS1, UGD	UDP-glucuronate decarboxylase 1	UXS1	80146	ENSG00000115652			Uxs1 (MGI:1915133)
chr2	106382113	106391394	2q12.2	2q12.2	612212	PLGLA, PRGA	Plasminogen-like A	PLGLA	285189				
chr2	106404679	106470934	2q12.3-q13	2q12.2	612706	RGPD3, RGP3	RANBP2-like and GRIP domain-containing protein 3	RGPD3	653489	ENSG00000153165			Ranbp2 (MGI:894323)
chr2	106700000	112200000	2q12.3-q13		612710	RGPD7, RGP7	RANBP2-like and GRIP domain-containing protein 7						
chr2	106801599	106887409	2q11.2-q12.1	2q12.3	608472	ST6GALII, KIAA1877	Beta-galactoside alpha-2,6-sialyltransferase II	ST6GAL2	84620	ENSG00000144057			St6gal2 (MGI:2445190)
chr2	107826920	107892543	2q12.3-q13	2q12.3	612707	RGPD4, RGP4	RANBP2-like and GRIP domain-containing protein 4	RGPD4	285190	ENSG00000196862			Ranbp2 (MGI:894323)
chr2	107986513	108014496	2q12.3	2q12.3	608761	SLC5A7, CHT1, HMN7A, CMS20	Solute carrier family 5 (choline transporter), member 7	SLC5A7	60482	ENSG00000115665		Myasthenic syndrome, congenital, 20, presynaptic, 617143 (3), Autosomal recessive; Neuronopathy, distal hereditary motor, type VIIA, 158580 (3), Autosomal dominant	Slc5a7 (MGI:1927126)
chr2	108239991	108265607	2q12.2	2q12.3	617151	SULT1C3	Sulfotransferase family 1C, member 3	SULT1C3	442038	ENSG00000196228			Sult1c1 (MGI:102928)
chr2	108288638	108309914	2q11.1-q11.2	2q12.3	602385	SULT1C1	Sulfotransferase 1C1	SULT1C2	6819	ENSG00000198203			Sult1c2 (MGI:1916333)
chr2	108377910	108388988	2q11.2	2q12.3	608357	SULT1C2	Sulfotransferase family 1C, member 2	SULT1C4	27233	ENSG00000198075			
chr2	108448560	108509397	2q12.3	2q12.3	612711	GCC2, GCC185, KIAA0336	GRIP and coiled-coil domains-containing protein 2	GCC2	9648	ENSG00000135968			Gcc2 (MGI:1917547)
chr2	108700000	112200000	2q13		257550	COMA	Cogan-type congenital oculomotor apraxia		266710		independent gene or feature of nephronophthisis	Oculomotor apraxia, congenital, Cogan-type, 257550 (2), Autosomal recessive	
chr2	108719445	109842300	2q11-q13	2q13	601181	RANBP2, NUP358, ANE1, IIAE3	RAN-binding protein 2	RANBP2	5903	ENSG00000153201		{Encephalopathy, acute, infection-induced, 3, susceptibility to}, 608033 (3), Autosomal dominant	
chr2	108894470	108989371	2q11-q13	2q13	604095	EDAR, DL, ED3, EDA3, HRM1, ECTD10A, ECTD10B	Ectodysplasin 1, anhidrotic receptor (downless, mouse, homolog of)	EDAR	10913	ENSG00000135960		Ectodermal dysplasia 10A, hypohidrotic/hair/nail type, autosomal dominant, 129490 (3), Autosomal dominant; Ectodermal dysplasia 10B, hypohidrotic/hair/tooth type, autosomal recessive, 224900 (3), Autosomal recessive; [Hair morphology 1, hair thickness], 612630 (3)	Edar (MGI:1343498)
chr2	109542796	109614205	2q13	2q13	611737	SEPT10	Septin 10	SEPT10	151011	ENSG00000186522	pseudogene on 8q22.1-q12		Sept10 (MGI:1918110)
chr2	109760593	109857690	2q12.3-q13	2q13	612708	RGPD5, RGP5, BS63	RANBP2-like and GRIP domain-containing protein 5	RGPD5	84220	ENSG00000015568			Ranbp2 (MGI:894323)
chr2	110083869	110118138	2q13	2q13	602022	MALL, BENE	mal, T-cell differentiation protein-like	MALL	7851	ENSG00000144063			Mall (MGI:2385152)
chr2	110123335	110205061	2q13	2q13	607100	NPHP1, NPH1, SLSN1, JBTS4	Nephrocystin	NPHP1	4867	ENSG00000144061		Joubert syndrome 4, 609583 (3), Autosomal recessive; Nephronophthisis 1, juvenile, 256100 (3), Autosomal recessive; Senior-Loken syndrome-1, 266900 (3), Autosomal recessive	Nphp1 (MGI:1858233)
chr2	110513801	110610902	2q12.3-q13	2q13	612709	RGPD6, RGP6	RANBP2-like and GRIP domain-containing protein 6	RGPD6	729540	ENSG00000183054			Ranbp2 (MGI:894323)
chr2	110637697	110678106	2q14	2q13	602452	BUB1	Budding uninhibited by benzimidazoles 1, S. cerevisiae, homolog of (mitotic checkpoint gene BUB1)	BUB1	699	ENSG00000169679		Colorectal cancer with chromosomal instability, somatic (3)	Bub1 (MGI:1100510)
chr2	111120913	111168444	2q13	2q13	603827	BCL2L11, BIM	BCL2-like 11	BCL2L11	10018	ENSG00000153094			Bcl2l11 (MGI:1197519)
chr2	111195865	111495160	2q13	2q13	617144	MIR4435-2HG, MORRBID	MIR4435-2 host gene (long noncoding RNA MORRBID)	MIR4435-2HG	541471				
chr2	111766149	111884195	2q13	2q13	608473	ANAP1, APC1	Anaphase-promoting complex, subunit 1	ANAPC1	64682	ENSG00000153107			Anapc1 (MGI:103097)
chr2	111898478	112039945	2q14.1	2q13	604705	MERTK, RP38	Mer tyrosine kinase protooncogene	MERTK	10461	ENSG00000153208		Retinitis pigmentosa 38, 613862 (3), Autosomal recessive	Mertk (MGI:96965)
chr2	112055222	112119317	2q13	2q13	617203	TMEM87B	Transmembrane protein 87B	TMEM87B	84910	ENSG00000153214			Tmem87b (MGI:1919727)
chr2	112138384	112254557	2q13	2q13-q14	611551	FBLN7, TM14	Fibulin 7	FBLN7	129804	ENSG00000144152			Fbln7 (MGI:1917620)
chr2	112200000	118100000	2q14.1		612459	BMIQ13	Body mass index quantitative trait locus 13		100233157		associated with rs7566605	[Body mass index QTL13], 612459 (2)	
chr2	112200000	147900000	2q14-q22		604288	CMD1H	Cardiomyopathy, dilated, 1H	CMD1H	23459			Cardiomyopathy, dilated, 1H, 604288 (2)	
chr2	112200000	136100000	2q14-q21		165320	LCO	Liver cancer oncogene					?Hepatocellular carcinoma (1)	
chr2	112200000	136100000	2q14-q21		164755	VIS1, HIS1	Viral integration site 1	VIS1	7435				
chr2	112368368	112433644	2q12.3-q13	2q14.1	602752	RGPD8, RGP8, RANBP2L1	RANBP2-like and GRIP domain-containing protein 8	RGPD8	727851	ENSG00000169629			Ranbp2 (MGI:894323)
chr2	112482126	112532645	2q13	2q14.1	608291	TTL	Tubulin-tyrosine ligase	TTL	150465	ENSG00000114999			Ttl (MGI:1916987)
chr2	112541914	112577152	2q14.1	2q14.1	602000	POLR1B	Polymerase I, RNA, subunit B	POLR1B	84172	ENSG00000125630			Polr1b (MGI:108014)
chr2	112584436	112589039	2q14.1	2q14.1	616978	CHCHD5, MIC14	Coiled coil-helix-coiled coil-helix domain-containing protein 5	CHCHD5	84269	ENSG00000125611			Chchd5 (MGI:1913420)
chr2	112645856	112663824	2q11-q14	2q14.1	137570	SLC20A1, GLVR1	Solute carrier family 20, phosphate transporter, member 1 (Gibbon ape leukemia virus receptor-1)	SLC20A1	6574	ENSG00000144136			Slc20a1 (MGI:108392)
chr2	112736348	112764676	2q13	2q14.1	616174	CKAP2L, RADMIS	Cytoskeleton-associated protein 2-like	CKAP2L	150468	ENSG00000169607		Filippi syndrome, 272440 (3), Autosomal recessive	Ckap2l (MGI:1917716)
chr2	112773914	112785397	2q14	2q14.1	147760	IL1A	Interleukin-1, alpha	IL1A	3552	ENSG00000115008	within 430kb of IL1B, IL1RN		Il1a (MGI:96542)
chr2	112829757	112836842	2q14	2q14.1	147720	IL1B	Interleukin-1, beta	IL1B	3553	ENSG00000125538	within 430kb of IL1RN, IL1A	{Gastric cancer risk after H. pylori infection}, 137215 (3), Autosomal dominant	Il1b (MGI:96543)
chr2	112908884	112918881	2q12.1	2q14.1	605510	IL37, IL1F7, FIL1Z, IL1H4, IL1RP1	Interleukin 37	IL37	27178	ENSG00000125571			
chr2	112978018	112985671	2q13	2q14.1	605542	IL36G, IL1F9, IL1H1, IL1RP2	Interleukin 36, gamma	IL36G	56300	ENSG00000136688			Il1f9 (MGI:2449929)
chr2	113005460	113011070	2q13	2q14.1	605509	IL36A, IL1F6, FIL1E	Interleukin 36, alpha	IL36A	27179	ENSG00000136694			Il1f6 (MGI:1859324)
chr2	113022090	113052866	2q13	2q14.1	605508	IL36B, IL1F8, IL1H2, FIL1H	Interleukin 36, beta	IL36B	27177	ENSG00000136696			Il1f8 (MGI:1916927)
chr2	113058637	113064743	2q13	2q14.1	605507	IL36RN, IL1F5, FIL1D, IL1HY1, IL1RP3, PSORP, PSORS14	Interleukin 36 receptor antagonist	IL36RN	26525	ENSG00000136695		Psoriasis 14, pustular, 614204 (3), Autosomal recessive	Il1f5 (MGI:1859325)
chr2	113067969	113075849	2q14	2q14.1	615296	IL1F10, IL1HY2	Interleukin 1 family, member 10	IL1F10	84639	ENSG00000136697			Il1f10 (MGI:2652548)
chr2	113099364	113134015	2q14.2	2q14.1	147679	IL1RN, MVCD4, DIRA	Interleukin-1 receptor antagonist	IL1RN	3557	ENSG00000136689		{Gastric cancer risk after H. pylori infection}, 137215 (3), Autosomal dominant; Interleukin 1 receptor antagonist deficiency, 612852 (3), Autosomal recessive; {Microvascular complications of diabetes 4}, 612628 (3)	Il1rn (MGI:96547)
chr2	113157398	113203228	2q13	2q14.1	614442	PSD4, EFA6B, TIC	Pleckstrin and Sec7 domains-containing protein 4	PSD4	23550	ENSG00000125637			Psd4 (MGI:2674093)
chr2	113215996	113278920	2q12-q14	2q14.1	167415	PAX8	Paired box homeotic gene-8	PAX8	7849	ENSG00000125618		Hypothyroidism, congenital, due to thyroid dysgenesis or hypoplasia, 218700 (3), Autosomal dominant	Pax8 (MGI:97492)
chr2	113437690	113496203	2q13-q14.1	2q14.1	611079	CBWD2	Cobalamin synthetase W domain-containing protein 2	CBWD2	150472	ENSG00000215126			
chr2	113499083	113501149	2q13-q14.1	2q14.1	611084	FOXD4L1	Forkhead box D4-like 1	FOXD4L1	200350	ENSG00000184492			
chr2	113627217	113643397	2q13	2q14.1	605412	RABL2A	RAB-like 2A	RABL2A	11159	ENSG00000144134			Rabl2 (MGI:1915958)
chr2	113889933	113961553	2q14.1	2q14.1	604222	ACTR3, ARP3	Actin-related protein 3	ACTR3	10096	ENSG00000115091			Actr3 (MGI:1921367)
chr2	114442357	115845751	2q12.3-q14.2	2q14.1	608209	DPP10, DPRP3, KIAA1492	Dipeptidyl peptidase X	DPP10	57628	ENSG00000175497			Dpp10 (MGI:2442409)
chr2	117814678	117832376	2q14.1	2q14.1	606355	DDX18	DEAD/H box 18	DDX18	8886	ENSG00000088205			Ddx18 (MGI:1914192)
chr2	118088417	118110030	2q14.1	2q14.1-q14.2	608660	INSIG2	Insulin-induced gene 2	INSIG2	51141	ENSG00000125629			Insig2 (MGI:1920249)
chr2	118842170	118848182	2q13-q21	2q14.2	131290	EN1	Engrailed-1	EN1	2019	ENSG00000163064			En1 (MGI:95389)
chr2	118942168	118994663	2q12-q13	2q14.2	604870	MARCO	Macrophage receptor with collagenous structure	MARCO	8685	ENSG00000019169			Marco (MGI:1309998)
chr2	119156242	119158894	2q14.2	2q14.2	614330	C1QL2, CTRP10, C1QTNF10	Complement component 1, q subcomponent-like 2	C1QL2	165257	ENSG00000144119			C1ql2 (MGI:3032521)
chr2	119222475	119265651	2q14.2	2q14.2	609671	STEAP3, TSAP6, AHMIO2	Six-transmembrane epithelial antigen of prostate 3	STEAP3	55240	ENSG00000115107	mutation identified in 1 AHMIO2 family	?Anemia, hypochromic microcytic, with iron overload 2, 615234 (3), Autosomal dominant	Steap3 (MGI:1915678)
chr2	119366923	119372550	2q12-q21	2q14.2	125950	DBI	Diazepam-binding inhibitor	DBI	1622	ENSG00000155368	?on 6q21-qter		Dbi (MGI:94865)
chr2	119439842	119524451	2q14.1	2q14.2	182098	SCTR	Secretin receptor	SCTR	6344	ENSG00000080293			Sctr (MGI:2441720)
chr2	119759630	119984898	2q14.2	2q14.2	176878	PTPN4, PTPMEG1	Protein-tyrosine phosphatase, nonreceptor-type, 4	PTPN4	5775	ENSG00000088179			Ptpn4 (MGI:1099792)
chr2	120013027	120179120	2q14	2q14.2	611730	EPB41L5, KIAA1548	Erythrocyte membrane protein band 4.1-like 5	EPB41L5	57669	ENSG00000115109			Epb41l5 (MGI:103006)
chr2	120252837	120294710	2cen-q13	2q14.2	179551	RALB	RAS-like protein B	RALB	5899	ENSG00000144118			Ralb (MGI:1927244)
chr2	120346141	120351807	2cen-q13	2q14.2	147390	INHBB	Inhibin, beta-2	INHBB	3625	ENSG00000163083			Inhbb (MGI:96571)
chr2	120735864	120992652	2q14	2q14.2	165230	GLI2, HPE9, CJS	GLI-Kruppel family member GLI2 (oncogene GLI2)	GLI2	2736	ENSG00000074047		Culler-Jones syndrome, 615849 (3), Autosomal dominant; Holoprosencephaly 9, 610829 (3), Autosomal dominant	Gli2 (MGI:95728)
chr2	121216586	121285209	2q14	2q14.2	609785	TFCP2L1, CRTR1, LBP9	Transcription factor CP2-like 1	TFCP2L1	29842	ENSG00000115112			Tfcp2l1 (MGI:2444691)
chr2	121337775	121649475	2q14	2q14.2-q14.3	605852	CLASP1, KIAA0622	CLIP-associated protein 1	CLASP1	23332	ENSG00000074054			Clasp1 (MGI:1923957)
chr2	121530879	121531008	2q14.2	2q14.2	601428	RNU4ATAC, U4ATAC, MOPD1, TALS, RFMN	RNA, U4, small nuclear, AT-AC form	RNU4ATAC	100151683			Microcephalic osteodysplastic primordial dwarfism, type I, 210710 (3), Autosomal recessive; Roifman syndrome, 616651 (3), Autosomal recessive	
chr2	121600000	136100000	2q14.3-q21.3		614588	DYT21	Dystonia 21	DYT21	100885773			Dystonia 21, 614588 (2), Autosomal dominant	
chr2	121726944	121736926	2q14.3	2q14.3	611970	NIFK, MKI67IP, NOPP34	Nucleolar protein interacting with the FHA domain of MKI67	NIFK	84365	ENSG00000155438			Nifk (MGI:1915199)
chr2	121755544	121767852	2q21.1	2q14.3	600575	TSN	Translin	TSN	7247	ENSG00000211460			Tsn (MGI:109263)
chr2	124025286	124921200	2q14	2q14.3	610519	CNTNAP5, CASPR5	Contactin-associated protein-like 5	CNTNAP5	129684	ENSG00000155052			Cntnap5a (MGI:3643623)
chr2	126655934	126696674	2q14-q21	2q14.3	110750	GYPC, GE, GPC	Glycophorin C	GYPC	2995	ENSG00000136732		[Blood group, Gerbich], 616089 (3); {Malaria, resistance to}, 611162 (3)	Gypc (MGI:1098566)
chr2	127048022	127107326	2q14	2q14.3	601248	BIN1, AMPHL, CNM2	Box-dependent MYC-interacting protein-1 (amphiphysin-like)	BIN1	274	ENSG00000136717		Centronuclear myopathy 2, 255200 (3), Autosomal recessive	Bin1 (MGI:108092)
chr2	127257289	127294175	2q21	2q14.3	133510	ERCC3, XPB, TTD2	Excision-repair cross-complementing rodent repair deficiency, complementation group 3	ERCC3	2071	ENSG00000163161		Trichothiodystrophy 2, photosensitive, 616390 (3), Autosomal recessive; Xeroderma pigmentosum, group B, 610651 (3), Autosomal recessive	Ercc3 (MGI:95414)
chr2	127298668	127387532	2q14.3	2q14.3	609487	MAP3K2, MEKK2	Mitogen-activated protein kinase kinase kinase 2	MAP3K2	10746	ENSG00000169967			Map3k2 (MGI:1346873)
chr2	127418142	127429245	2q13-q14	2q14.3	612283	PROC, PC, THPH3, THPH4	Protein C (inactivator of coagulation factors Va and VIIIa)	PROC	5624	ENSG00000115718		Thrombophilia due to protein C deficiency, autosomal dominant, 176860 (3), Autosomal dominant; Thrombophilia due to protein C deficiency, autosomal recessive, 612304 (3), Autosomal recessive	Proc (MGI:97771)
chr2	127535688	127637727	2q21.1	2q14.3	606541	MYO7B	Myosin VIIb	MYO7B	4648	ENSG00000169994			Myo7b (MGI:107709)
chr2	127638420	127681785	2q14.3	2q14.3	607908	LIMS2, PINCH2, LGMD2W	LIM and senescent cell antigen-like domains 2	LIMS2	55679	ENSG00000072163	mutation identified in 1 LGMD2W family	Muscular dystrophy, limb-girdle, type 2W, 616827 (3), Autosomal recessive	Lims2 (MGI:2385067)
chr2	127645863	127652638	2q21	2q14.3	603071	GPR17	G protein-coupled receptor-17	GPR17	2840	ENSG00000144230			Gpr17 (MGI:3584514)
chr2	127846265	127858154	2q14.3	2q14.3	606017	POLR2D	Polymerase II, RNA, subunit D	POLR2D	5433	ENSG00000144231			Polr2d (MGI:1916491)
chr2	127941216	128028119	2q14.3	2q14.3	609697	SAP130	Sin3A-associated protein, 130kD	SAP130	79595	ENSG00000136715			Sap130 (MGI:1919782)
chr2	128091179	128195676	2q14.3	2q14.3	605897	UGGT1, HUGT1	UDP-glucose glycoprotein glucosyltransferase 1	UGGT1	56886	ENSG00000136731			Uggt1 (MGI:2443162)
chr2	128265479	128318596	2q21	2q14.3	604846	HS6ST1, HS6ST, HH15	Heparan sulfate 6-O-sulfotransferase 1	HS6ST1	9394	ENSG00000136720		{Hypogonadotropic hypogonadism 15 with or without anosmia}, 614880 (3), Autosomal dominant	Hs6st1 (MGI:1354958)
chr2	129100000	131700000	2q21.1		612311	ADHD5	Attention deficit-hyperactivity disorder, susceptibility to, 5		100190790		max lod at rs985162	{Attention deficit-hyperactivity disorder, susceptibility to, 5}, 612311 (2)	
chr2	129100000	147900000	2q21.1-q22		608316	CHDS2	Coronary heart disease, susceptibility to, 2		387584			{Coronary heart disease, susceptibility to, 2}, 608316 (2)	
chr2	129100000	136100000	2q21		606240	NMTC3	Nonmedullary thyroid carcinoma 3		114568			{Thyroid carcinoma, nonmedullary, 3}, 606240 (2), Autosomal dominant	
chr2	129979661	129982737	2q21.1	2q21.1	612909	RAB6C, WTH3	Ras-associated protein RAB6C	RAB6C	84084	ENSG00000222014			
chr2	130151391	130182749	2q21.1	2q21.1	610457	SMPD4, NSMASE3, KIAA1418	Sphingomyelin phosphodiesterase 4, neutral membrane	SMPD4	55627	ENSG00000136699			Smpd4 (MGI:1924876)
chr2	130181921	130190728	2q21.1	2q21.1	613450	FAM128B, MOZART2B	Family with sequence similarity 128, member B	MZT2B	80097	ENSG00000152082			
chr2	130337932	130342680	2q21.2	2q21.1	613734	CCDC115, CCP1, CDG2O	Coiled-coil domain-containing protein 115	CCDC115	84317	ENSG00000136710		Congenital disorder of glycosylation, type IIo, 616828 (3), Autosomal recessive	Ccdc115 (MGI:1916918)
chr2	130342224	130347960	2q21.1	2q21.1	612981	IMP4, BXDC4	Imp4, S. cerevisiae, homolog of	IMP4	92856	ENSG00000136718			Imp4 (MGI:106572)
chr2	130356006	130375408	2q21.1	2q21.1	606587	PTPN18, BDP1	Protein-tyrosine phosphatase, nonreceptor-type, 18	PTPN18	26469	ENSG00000072135			Ptpn18 (MGI:108410)
chr2	130592164	130599574	2q21.1	2q21.1	605194	CFC1, CRYPTIC, HTX2	Cryptic protein	CFC1	55997	ENSG00000136698		Heterotaxy, visceral, 2, autosomal, 605376 (3), Autosomal dominant	Cfc1 (MGI:109448)
chr2	130836915	131051513	2q22	2q21.1	605216	ARHGEF4, ASEF	RHO guanine nucleotide exchange factor 4	ARHGEF4	50649	ENSG00000136002			Arhgef4 (MGI:2442507)
chr2	131209580	131265253	2q21.1	2q21.1	608914	POTEE, POTE2	POTE ankyrin domain family, member E	POTEE	445582	ENSG00000188219	5 POTE2 genes within 2Mb segment		
chr2	131469723	131493079	2q21.1	2q21.1	613449	FAM128A, MOZART2A	Family with sequence similarity 128, member A	MZT2A	653784	ENSG00000173272			Mzt2 (MGI:1922845)
chr2	131476006	131482933	2q21.1	2q21.1	617878	TUBA3D, KTCN9	Tubulin, alpha-3D	TUBA3D	113457	ENSG00000075886		Keratoconus 9, 617928 (3)	
chr2	131592041	131626428	2q21.1	2q21.1	611266	POTEKP, ACT, ACTBL3, POTEK, FKSG30	POTE ankyrin domain family, member K, pseudogene	POTEKP	440915				
chr2	132415971	132646595	2q21-q22	2q21.2	602886	GPR39	G protein-coupled receptor-39	GPR39	2863	ENSG00000183840			Gpr39 (MGI:1918361)
chr2	132643279	132671578	2q21.2	2q21.2	610450	LYPD1, PHTS	LY6/PLAUR domain-containing protein 1	LYPD1	116372	ENSG00000150551			Lypd1 (MGI:1919835)
chr2	132671787	133675181	2q21.2	2q21.2	608789	NCKAP5, NAP5	NCK-associated protein 5	NCKAP5	344148	ENSG00000176771			Nckap5 (MGI:2686394)
chr2	134119921	134454620	2q21	2q21.2-q21.3	601774	MGAT5	Mannosyl (alpha-1,6-)-glycoprotein beta-1,6-N-acetyl- glucosaminyltransferase	MGAT5	4249	ENSG00000152127			Mgat5 (MGI:894701)
chr2	134918809	134959344	2p14-q21.3	2q21.3	603862	CCNT2	Cyclin T2	CCNT2	905	ENSG00000082258			Ccnt2 (MGI:1920199)
chr2	135052264	135176666	2q21.3	2q21.3	602536	RAB3GAP1, WARBM1, P130	RAB3 GTPase-activating protein, catalytic subunit	RAB3GAP1	22930	ENSG00000115839		Warburg micro syndrome 1, 600118 (3), Autosomal recessive	Rab3gap1 (MGI:2445001)
chr2	135164217	135531235	2q21.3	2q21.3	615655	ZRANB3	Zinc finger RANBP2-type domain-containing protein 3	ZRANB3	84083	ENSG00000121988			Zranb3 (MGI:1918362)
chr2	135665396	135665477	2q21	2q21.3	611774	MIR128-1, MIRN128-1, MIR128A	Micro RNA 128-1	MIR128-1	406915				
chr2	135741618	135785062	2q21.3-q22.1	2q21.3	611216	UBXN4, UBXD2, KIAA2042, ERASIN	UBX domain protein 4	UBXN4	23190	ENSG00000144224			Ubxn4 (MGI:1915062)
chr2	135787839	135837194	2q21	2q21.3	603202	LCT, LAC, LPH	Lactase (lactase-phlorizin hydrolase)	LCT	3938	ENSG00000115850		Lactase deficiency, congenital, 223000 (3), Autosomal recessive	Lct (MGI:104576)
chr2	135839625	135876476	2q21	2q21.3	601806	MCM6	Minichromosome maintenance deficient (mis5, S. pombe) 6	MCM6	4175	ENSG00000076003	mutations in introns 9 and 13	Lactase persistence/nonpersistence, 223100 (3), Autosomal dominant	Mcm6 (MGI:1298227)
chr2	135905880	135985683	2q21.3	2q21.3	603084	DARS, HBSL, HBSL	Aspartyl tRNA synthetase	DARS	1615	ENSG00000115866		Hypomyelination with brainstem and spinal cord involvement and leg spasticity, 615281 (3), Autosomal recessive	Dars (MGI:2442544)
chr2	136100000	168900000	2q22-q24		611535	MAFD5	Major affective disorder 5		100188843			{Major affective disorder 5}, 611535 (2)	
chr2	136114348	136118154	2q21	2q22.1	162643	CXCR4, D2S201E, NPY3R, WHIMS	Chemokine (C-X-C motif) receptor 4 (neuropeptide Y receptor Y3)	CXCR4	7852	ENSG00000121966		Myelokathexis, isolated (3); WHIM syndrome, 193670 (3), Autosomal dominant	Cxcr4 (MGI:109563)
chr2	137964067	138016363	2q22	2q22.1	605238	HNMT, MRT51	Histamine N-methyltransferase	HNMT	3176	ENSG00000150540		{Asthma, susceptibility to}, 600807 (3), Autosomal dominant; Mental retardation, autosomal recessive 51, 616739 (3), Autosomal recessive	Hnmt (MGI:2153181)
chr2	138669156	138780240	2q22.1	2q22.1	604635	NXPH2, NPH2	Neuroxophilin 2	NXPH2	11249	ENSG00000144227			Nxph2 (MGI:107491)
chr2	142877625	143042315	2q22.2	2q22.2	605197	KYNU, KYNUU, VCRL2	Kynureninase	KYNU	8942	ENSG00000115919	mutation identified in 1 KYNUU family	?Hydroxykynureninuria, 236800 (3), Autosomal recessive; Vertebral, cardiac, renal, and limb defects syndrome 2, 617661 (3), Autosomal recessive	Kynu (MGI:1918039)
chr2	143070972	143768351	2q22.2-q22.3	2q22.2-q22.3	610578	ARHGAP15, BM046	Rho GTPase-activating protein 15	ARHGAP15	55843	ENSG00000075884			Arhgap15 (MGI:1923367)
chr2	143945044	144333068	2q22	2q22.3	610165	GTDC1	Glycosyltransferase-like domain containing 1	GTDC1	79712	ENSG00000121964			Gtdc1 (MGI:2444269)
chr2	144384374	144520390	2q22	2q22.3	605802	ZEB2, ZFHX1B, SMADIP1, SIP1	Zinc finger E box-binding homeobox 2	ZEB2	9839	ENSG00000169554		Mowat-Wilson syndrome, 235730 (3), Autosomal dominant	Zeb2 (MGI:1344407)
chr2	147844516	147930826	2q22.2-q23.3	2q22.3-q23.1	102581	ACVR2A, ACVR2	Activin A receptor, type IIA	ACVR2A	92	ENSG00000121989			Acvr2a (MGI:102806)
chr2	147900000	168900000	2q23-q24.3		603964	DFNA16	Deafness, autosomal dominant 16	DFNA16	1694			Deafness, autosomal dominant 16, 603964 (2), Autosomal dominant	
chr2	147900000	182100000	2q23-q31		605818	DFNB27	Deafness, autosomal recessive 27	DFNB27	23713			Deafness, autosomal recessive 27, 605818 (2), Autosomal recessive	
chr2	147930396	148021603	2q22-q23	2q23.1	603056	ORC4, ORC4L	Origin recognition complex, subunit 4, S. cerevisiae, homolog of	ORC4	5000	ENSG00000115947		Meier-Gorlin syndrome 2, 613800 (3), Autosomal recessive	Orc4 (MGI:1347043)
chr2	148021010	148516922	2q23.1	2q23.1	611472	MBD5, KIAA1461, MRD1	Methyl-CpG-binding domain protein 5	MBD5	55777	ENSG00000204406		Mental retardation, autosomal dominant 1, 156200 (3), Autosomal dominant	Mbd5 (MGI:2138934)
chr2	148644779	148788490	2q23.1	2q23.1	611000	EPC2	Enhancer of polycomb, Drosophila, homolog of, 2	EPC2	26122	ENSG00000135999			Epc2 (MGI:1278321)
chr2	148875222	149026758	2q23.1	2q23.1-q23.2	604593	KIF5C, NKHC2, CDCBM2	Kinesin family member 5C	KIF5C	3800	ENSG00000168280		Cortical dysplasia, complex, with other brain malformations 2, 615282 (3), Autosomal dominant	Kif5c (MGI:1098269)
chr2	149329984	149474147	2q23.1-q23.2	2q23.2	613359	LYPD6	LY6/PLAUR domain-containing protein 6	LYPD6	130574	ENSG00000187123			Lypd6 (MGI:2443848)
chr2	149569632	149587815	2q23.2	2q23.2	611935	C2orf25, MMADHC	Chromosome 2 open reading frame 25	MMADHC	27249	ENSG00000168288		Homocystinuria, cblD type, variant 1, 277410 (3), Autosomal recessive; Methylmalonic aciduria and homocystinuria, cblD type, 277410 (3), Autosomal recessive; Methylmalonic aciduria, cblD type, variant 2, 277410 (3), Autosomal recessive	Mmadhc (MGI:1923786)
chr2	150468192	150487694	2q23.3	2q23.3	602924	RND3, RHOE, ARHE	RHO family GTPase 3	RND3	390	ENSG00000115963			Rnd3 (MGI:1921444)
chr2	151270464	151289915	2q23.3	2q23.3	603525	NMI	NMYC interactor	NMI	9111	ENSG00000123609	previously assigned to 22q13.3		Nmi (MGI:1928368)
chr2	151357591	151380047	2q23.3	2q23.3	600410	TNFAIP6	Tumor necrosis factor, alpha-induced protein-6	TNFAIP6	7130	ENSG00000123610			Tnfaip6 (MGI:1195266)
chr2	151485333	151734486	2q22	2q23.3	161650	NEB, NEM2	Nebulin	NEB	4703	ENSG00000183091		Nemaline myopathy 2, autosomal recessive, 256030 (3), Autosomal recessive	Neb (MGI:97292)
chr2	151800965	151828494	2q23-q24.1	2q23.3	608960	ARL5	ADP-ribosylation factor-like 5	ARL5A	26225	ENSG00000162980			Arl5a (MGI:1922673)
chr2	151832770	152099166	2q22-q23	2q23.3	601949	CACNB4, EJM6, EA5, EIG9	Calcium channel, voltage-dependent, beta 4 subunit	CACNB4	785	ENSG00000182389		{Epilepsy, idiopathic generalized, susceptibility to, 9}, 607682 (3), Autosomal dominant; {Epilepsy, juvenile myoclonic, susceptibility to, 6}, 607682 (3), Autosomal dominant; Episodic ataxia, type 5, 613855 (3), Autosomal dominant	Cacnb4 (MGI:103301)
chr2	152116800	152175991	2q23.3	2q23.3	606244	STAM2	Signal-transducing adaptor molecule 2	STAM2	10254	ENSG00000115145			Stam2 (MGI:1929100)
chr2	152335169	152649833	2q23.3	2q23.3	616285	FMNL2, KIAA1902	Formin-like 2	FMNL2	114793	ENSG00000157827			Fmnl2 (MGI:1918659)
chr2	152651592	152718011	2q23.3	2q23.3	612941	PRPF40A, HYPA, FNBP3, FBP11	Precursor mRNA-processing factor 40, S. cerevisiae, homolog of, A	PRPF40A	55660	ENSG00000196504			Prpf40a (MGI:1860512)
chr2	152717692	152761252	2q23.3	2q23.3	616495	ARL6IP6, AIP6	ADP-ribosylation factor-like 6-interacting protein 6	ARL6IP6	151188	ENSG00000177917			Arl6ip6 (MGI:1929507)
chr2	153477337	153478807	2q23	2q23.3	612171	RPRM	Reprimo	RPRM	56475	ENSG00000177519			Rprm (MGI:1915124)
chr2	153871897	154454176	2q24.1	2q23.3-q24.1	608369	GALNT13, KIAA1918	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 13	GALNT13	114805	ENSG00000144278			Galnt13 (MGI:2139447)
chr2	154000000	196600000	2q24-q32		612108	FGQTL1	Fasting plasma glucose level QTL 1		100499165		associated with rs560887	[Fasting plasma glucose level QTL 1], 612108 (2)	
chr2	154000000	177100000	2q24.1-q31.1		610295	INTLQ2	Intelligence quantitative trait locus 3		100462723			{Intelligence QTL3}, 610295 (2)	
chr2	154000000	196600000	2q24-q32		156232	MMDK, MDK	Mesomelic dysplasia, Kantaputra type		10305			Mesomelic dysplasia, Kantaputra type, 156232 (2), Autosomal dominant	
chr2	154000000	158900000	2q24.1		612759	SYNSTH	Synesthesia		100301527		max lod at D2S142	Synesthesia, 612759 (2)	
chr2	154698580	154858351	2q24.1	2q24.1	601534	KCNJ3, GIRK1	Potassium inwardly-rectifying channel, subfamily J, member 3	KCNJ3	3760	ENSG00000162989			Kcnj3 (MGI:104742)
chr2	156324431	156332774	2q22-q23	2q24.1	601828	NR4A2, NURR1, NOT, TINUR	Nuclear receptor subfamily 4, group A, member 2	NR4A2	4929	ENSG00000153234			Nr4a2 (MGI:1352456)
chr2	156435289	156586402	2q24.1	2q24.1	138430	GPD2	Glycerol-3-phosphate dehydrogenase 2 (mitochondrial)	GPD2	2820	ENSG00000115159	pseudogene on 19	{Diabetes, type 2, susceptibility to}, 125853 (3), Autosomal dominant	Gpd2 (MGI:99778)
chr2	157257597	157318490	2q24.2	2q24.1	615129	GALNT5, GALNACT5	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 5	GALNT5	11227	ENSG00000136542			Galnt5 (MGI:2179403)
chr2	157318612	157327712	2q24.1	2q24.1	610072	ERMN, JN, KIAA1189	Ermin	ERMN	57471	ENSG00000136541			Ermn (MGI:1925017)
chr2	157412781	157444091	2q11.2	2q24.1	604448	CYTIP, PSCDBP, HE	Cytohesin 1 interacting protein	CYTIP	9595	ENSG00000115165			Cytip (MGI:2183535)
chr2	157526766	157628886	2q24.1	2q24.1	608981	ACVR1C, ALK7	Activin A receptor, type IC	ACVR1C	130399	ENSG00000123612			Acvr1c (MGI:2661081)
chr2	157736445	157875895	2q23-q24	2q24.1	102576	ACVR1, ACVRLK2, ALK2, FOP	Activin A receptor, type I	ACVR1	90	ENSG00000115170		Fibrodysplasia ossificans progressiva, 135100 (3), Autosomal dominant	Acvr1 (MGI:87911)
chr2	157995178	158136153	2q24.1	2q24.1	617340	UPP2	Uridine phosphorylase 2	UPP2	151531	ENSG00000007001			Upp2 (MGI:1923904)
chr2	158456879	158681428	2q23-q31	2q24.1	604276	PKP4	Plakophilin-4	PKP4	8502	ENSG00000144283			Pkp4 (MGI:109281)
chr2	158968599	159232658	2q24.2	2q24.2	611397	TANC1, KIAA1728	Tetratricopeptide repeat-, ankyrin repeat-, and coiled-coil-containing protein 1	TANC1	85461	ENSG00000115183			Tanc1 (MGI:1914110)
chr2	159315311	159712438	2q23-q24	2q24.2	605683	BAZ2B	Bromodomain adjacent to zinc finger domain, 2B	BAZ2B	29994	ENSG00000123636			Baz2b (MGI:2442782)
chr2	159712456	159768582	2q24.2	2q24.2	613334	MARCH7	Membrane-associated RING-CH finger protein 7	MARCH7	64844	ENSG00000136536			March7 (MGI:1931053)
chr2	159768627	159798254	2q24	2q24.2	612246	CD302, DCL1, KIAA0022	CD302 antigen	CD302	9936	ENSG00000241399			Cd302 (MGI:1913455)
chr2	159932001	160062614	2q23-q24	2q24.2	604939	PLA2R1, PLA2R	Phospholipase A2 receptor 1	PLA2R1	22925	ENSG00000153246			Pla2r1 (MGI:102468)
chr2	160099665	160200312	2q24.2	2q24.2	147558	ITGB6, AI1H	Integrin, beta-6	ITGB6	3694	ENSG00000115221		Amelogenesis imperfecta, type IH, 616221 (3), Autosomal recessive	Itgb6 (MGI:96615)
chr2	160272150	160493982	2q24.2	2q24.2	602310	RBMS1, MSSP, SCR2	RNA-binding motif protein, single strand-interacting, 1	RBMS1	5937	ENSG00000153250			Rbms1 (MGI:1861774)
chr2	161136954	161236175	2q24.2	2q24.2	603893	TANK, ITRAF	TRAF family member-associated NF-Kappa-B activator	TANK	10010	ENSG00000136560			Tank (MGI:107676)
chr2	161308274	161411716	2q24.2	2q24.2	607173	PSMD14, POH1, PAD1	Proteasome 26S subunit, non-ATPase, 14	PSMD14	10213	ENSG00000115233			Psmd14 (MGI:1913284)
chr2	161416093	161425866	2q23-q37	2q24.2	604616	TBR1	T-box, brain, 1	TBR1	10716	ENSG00000136535			Tbr1 (MGI:107404)
chr2	161620962	161985275	2q23-q24	2q24.2	605556	SLC4A10	Solute carrier family 4 (sodium bicarbonate cotransporter-like), member 10	SLC4A10	57282	ENSG00000144290			Slc4a10 (MGI:2150150)
chr2	161992240	162074541	2q23	2q24.2	102720	DPP4, CD26, ADCP2	Dipeptidylpeptidase IV (CD26; adenosine deaminase complexing protein-2)	DPP4	1803	ENSG00000197635			Dpp4 (MGI:94919)
chr2	162142868	162152403	2q36-q37	2q24.2	138030	GCG	Glucagon	GCG	2641	ENSG00000115263		[?Hyperproglucagonemia] (1)	
chr2	162170683	162243556	2q23	2q24.2	600403	FAP, FAPA	Fibroblast activation protein, alpha subunit	FAP	2191	ENSG00000078098			Fap (MGI:109608)
chr2	162267078	162318707	2q24	2q24.2	606951	IFIH1, MDA5, AGS7, SGMRT1	Interferon induced with helicase C domain 1	IFIH1	64135	ENSG00000115267		Aicardi-Goutieres syndrome 7, 615846 (3), Autosomal dominant; Singleton-Merten syndrome 1, 182250 (3), Autosomal dominant	Ifih1 (MGI:1918836)
chr2	162318762	162377224	2q24.2	2q24.2	607030	GCA	Grancalcin	GCA	25801	ENSG00000115271			Gca (MGI:1918521)
chr2	162371406	162838816	2q24.2	2q24.2	608169	KCNH7, ERG3, HERG3, Kv11.3	Potassium channel, voltage-gated, subfamily H, member 7	KCNH7	90134	ENSG00000184611			Kcnh7 (MGI:2159566)
chr2	162900000	168900000	2q24.3		610155	IDDM19	Diabetes mellitus, insulin-dependent, 19				associated with rs1990760	{Diabetes mellitus, insulin-dependent, 19}, 610155 (2)	
chr2	163602610	163736154	4q22.1	2q24.3	605295	FIGN	Fidgetin	FIGN	55137	ENSG00000182263			Fign (MGI:1890647)
chr2	164492405	164622958	2q22-q24	2q24.3	601524	GRB14	Growth factor receptor-bound protein 14	GRB14	2888	ENSG00000115290			Grb14 (MGI:1355324)
chr2	164680184	164842167	2q24	2q24.3	610318	COBLL1, COBLR1, KIAA0977	COBL-like protein 1	COBLL1	22837	ENSG00000082438			Cobll1 (MGI:2442894)
chr2	164898198	164955720	2q24.3	2q24.3	616526	SLC38A11	Solute carrier family 38 (amino acid transporter), member 11	SLC38A11	151258	ENSG00000169507			Slc38a11 (MGI:2443383)
chr2	165087519	165204294	2q24	2q24.3	182391	SCN3A	Sodium channel, voltage-gated, type III, alpha polypeptide	SCN3A	6328	ENSG00000153253			Scn3a (MGI:98249)
chr2	165208055	165392309	2q23-q24.3	2q24.3	182390	SCN2A, SCN2A1, BFIC3, EIEE11, BFIS3, BFNIS	Sodium channel, voltage-gated, type II, alpha subunit	SCN2A	6326	ENSG00000136531	4 related genes on chr.2	Epileptic encephalopathy, early infantile, 11, 613721 (3), Autosomal dominant; Seizures, benign familial infantile, 3, 607745 (3), Autosomal dominant	Scn2a (MGI:98248)
chr2	165747802	165796351	2q24-q31	2q24.3	601756	GALNT3, HHS, HFTC	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 3	GALNT3	2591	ENSG00000115339		Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3), Autosomal recessive	Galnt3 (MGI:894695)
chr2	165873361	165953837	2q24.3	2q24.3	612014	TTC21B, THM1, NPHP12, SRTD4, ATD4	Tetratricopeptide repeat domain 21B	TTC21B	79809	ENSG00000123607		Nephronophthisis 12, 613820 (3), Autosomal recessive, Autosomal dominant; Short-rib thoracic dysplasia 4 with or without polydactyly, 613819 (3), Autosomal recessive	Ttc21b (MGI:1920918)
chr2	165989159	166149215	2q24	2q24.3	182389	SCN1A, GEFSP2, SMEI, FEB3A, EIEE6, FHM3	Sodium channel, voltage-gated, type I, alpha polypeptide	SCN1A	6323	ENSG00000144285		Epilepsy, generalized, with febrile seizures plus, type 2, 604403 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 6 (Dravet syndrome), 607208 (3), Autosomal dominant; Febrile seizures, familial, 3A, 604403 (3), Autosomal dominant; Migraine, familial hemiplegic, 3, 609634 (3), Autosomal dominant	Scn1a (MGI:98246)
chr2	166195184	166375986	2q24	2q24.3	603415	SCN9A, NENA, PN1, FEB3B, GEFSP7, SFNP, HSAN2D	Sodium channel, voltage-gated, type IX, alpha subunit	SCN9A	6335	ENSG00000169432		{Dravet syndrome, modifier of}, 607208 (3), Autosomal dominant; Epilepsy, generalized, with febrile seizures plus, type 7, 613863 (3), Autosomal dominant; Erythermalgia, primary, 133020 (3), Autosomal dominant; Febrile seizures, familial, 3B, 613863 (3), Autosomal dominant; HSAN2D, autosomal recessive, 243000 (3), Autosomal recessive; Insensitivity to pain, congenital, 243000 (3), Autosomal recessive; Paroxysmal extreme pain disorder,, 167400 (3), Autosomal dominant; Small fiber neuropathy, 133020 (3), Autosomal dominant	Scn9a (MGI:107636)
chr2	166403572	166494263	2q21-q23	2q24.3	182392	SCN7A, SCN6A	Sodium channel, voltage-gated, type VII, alpha polypeptide	SCN7A	6332	ENSG00000136546			Scn7a (MGI:102965)
chr2	166888486	167259752	2q24.3	2q24.3	609778	CMYA3, XIRP2	Cardiomyopathy-associated protein 3	XIRP2	129446	ENSG00000163092			Xirp2 (MGI:2685198)
chr2	167293059	167870855	2q24.3	2q24.3	603093	B3GALT1	UDP-GAL:beta-GlcNAc beta-1,3-galactosyltransferase, polypeptide 1	B3GALT1	8708	ENSG00000172318			B3galt1 (MGI:1349403)
chr2	167954019	168247594	2q24.3	2q24.3	607648	STK39, SPAK	Serine/threonine protein kinase 39	STK39	27347	ENSG00000198648			Stk39 (MGI:1858416)
chr2	168455861	168775133	2q24.3	2q24.3	615336	CERS6, LASS6	Ceramide synthase 6	CERS6	253782	ENSG00000172292			Cers6 (MGI:2442564)
chr2	168786538	168865338	2q31.1	2q24.3	607496	NOSTRIN	Nitric oxide synthase trafficker	NOSTRIN	115677	ENSG00000163072			Nostrin (MGI:3606242)
chr2	168865044	168890442	2q31.1	2q24.3	609395	SPC25, SPBC25	SPC25, NDC80 kinetochore complex component	SPC25	57405	ENSG00000152253			Spc25 (MGI:1913692)
chr2	168900000	177100000	2q31.1		613681	DUP2q31.1, C2DUPq31.1	Chromosome 2q31.1 duplication syndrome				duplication of 9 HOXD genes and MTX2	Chromosome 2q31.1 duplication syndrome, 613681 (4), Autosomal dominant	
chr2	168900000	182100000	2q31		600321	IDDM7	Insulin-dependent diabetes mellitus-7	IDDM7	3406			{Diabetes mellitus, insulin-dependent, 7}, 600321 (2)	
chr2	168900000	182100000	2q31		611147	PNKD2	Paroxysmal nonkinesigenic dyskinesia 2		100188328		between D2S2188 and D2S364	Paroxysmal nonkinesigenic dyskinesia 2, 611147 (2), Autosomal dominant	
chr2	168900000	182100000	2q31		606708	SHFM5	Split-hand/foot malformation 5	SHFM5	171157		between EVX2 and D2S294	Split-hand/foot malformation 5, 606708 (2)	
chr2	168901222	168909999	2q24-q32	2q31.1	608058	G6PC2, IGRP	Glucose-6-phosphatase, catalytic, 2	G6PC2	57818	ENSG00000152254			G6pc2 (MGI:1277193)
chr2	168915467	169031395	2q24	2q31.1	603201	ABCB11, BSEP, SPGP, PFIC2, BRIC2	ATP-binding cassette, subfamily B, member 11 (bile salt export pump)	ABCB11	8647	ENSG00000073734		Cholestasis, benign recurrent intrahepatic, 2, 605479 (3), Autosomal recessive; Cholestasis, progressive familial intrahepatic 2, 601847 (3), Autosomal recessive	Abcb11 (MGI:1351619)
chr2	169067034	169096166	2q31.1	2q31.1	612131	DHRS9, RDHTBE	Short-chain dehydrogenase/reductase family, member 9	DHRS9	10170	ENSG00000073737			Dhrs9 (MGI:2442798)
chr2	169127108	169362611	2q24-q31	2q31.1	600073	LRP2, DBS	Low density lipoprotein-related protein 2	LRP2	4036	ENSG00000081479		Donnai-Barrow syndrome, 222448 (3), Autosomal recessive	Lrp2 (MGI:95794)
chr2	169479495	169506654	2q31	2q31.1	603650	BBS5	BBS gene 5	BBS5	129880	ENSG00000163093		Bardet-Biedl syndrome 5, 615983 (3), Autosomal recessive	Bbs5 (MGI:1919819)
chr2	169509701	169526261	2q31.1	2q31.1	607701	KLHL41, KBTBD10, SARCOSIN, NEM9	Kelch-like family member 41	KLHL41	10324	ENSG00000239474		Nemaline myopathy 9, 615731 (3), Autosomal recessive	Klhl41 (MGI:2683854)
chr2	169527879	169573920	2q31.3	2q31.1	617529	FASTKD1, KIAA1800	Fast kinase domains 1	FASTKD1	79675	ENSG00000138399			Fastkd1 (MGI:2444596)
chr2	169584339	169641405	2q31.1	2q31.1	606093	PPIG	Peptidyl-prolyl isomerase G (cyclophilin G)	PPIG	9360	ENSG00000138398			Ppig (MGI:2445173)
chr2	169798811	169812063	2q31.1	2q31.1	109090	SSB, LARP3	Sjogren syndrome antigen B	SSB	6741	ENSG00000138385			Ssb (MGI:98423)
chr2	169827461	170084130	2q31.1	2q31.1	613831	UBR3	Ubiquitin protein ligase E3 component N-recognin 3	UBR3	130507	ENSG00000144357			Ubr3 (MGI:1861100)
chr2	170178144	170655163	2q31.1-q31.2	2q31.1	610040	MYO3B	Myosin IIIB	MYO3B	140469	ENSG00000071909			Myo3b (MGI:2448580)
chr2	170714724	170717987	2q31.1	2q31.1	609391	SP5	Transcription factor Sp5	SP5	389058	ENSG00000204335			Sp5 (MGI:1927715)
chr2	170813209	170861150	2q31	2q31.1	605363	GAD1, SCP, CPSQ1	Glutamate decarboxylase-1, brain, 67kD	GAD1	2571	ENSG00000128683	mutation identified in 1 CPSQ1 family	?Cerebral palsy, spastic quadriplegic, 1, 603513 (3), Autosomal recessive	Gad1 (MGI:95632)
chr2	171434165	171491028	2q22.3-q35	2q31.1	612515	DCAF17, C20orf37	DDB1- and CUL4-associated factor 17	DCAF17	80067	ENSG00000115827		Woodhouse-Sakati syndrome, 241080 (3), Autosomal recessive	Dcaf17 (MGI:1923013)
chr2	171687408	171750157	2q31.1	2q31.1	603331	DYNC1I2, DNCI2, IC2	Dynein, cytoplasmic-1, intermediate chain-2	DYNC1I2	1781	ENSG00000077380			
chr2	171783404	171894305	2q24	2q31.1	603667	SLC25A12, ARALAR, EIEE39	Solute carrier family 25 (mitochondrial carrier, Aralar), member 12	SLC25A12	8604	ENSG00000115840		Epileptic encephalopathy, early infantile, 39, 612949 (3), Autosomal recessive	Slc25a12 (MGI:1926080)
chr2	171922424	171983685	2q31.2-q33.1	2q31.1	603053	HAT1	Histone acetyltransferase-1	HAT1	8520	ENSG00000128708			Hat1 (MGI:96013)
chr2	171999896	172082429	2q31.1	2q31.1	610267	METAP1D, MAP1D	Methionyl aminopeptidase type 1D (mitochondrial)	METAP1D	254042	ENSG00000172878			Metap1d (MGI:1913809)
chr2	172085479	172089673	2q32	2q31.1	600029	DLX1	Distal-less homeo box-1	DLX1	1745	ENSG00000144355			Dlx1 (MGI:94901)
chr2	172099437	172102749	2q32	2q31.1	126255	DLX2, TES1	Distal-less homeo box-2	DLX2	1746	ENSG00000115844			Dlx2 (MGI:94902)
chr2	172427353	172506454	2q31.1	2q31.1	147556	ITGA6	Integrin, alpha-6	ITGA6	3655	ENSG00000091409		Epidermolysis bullosa, junctional, with pyloric stenosis, 226730 (3), Autosomal recessive	Itga6 (MGI:96605)
chr2	172555372	172672697	2q31.1	2q31.1	602524	PDK1	Pyruvate dehydrogenase kinase, isoenzyme 1	PDK1	5163	ENSG00000152256			Pdk1 (MGI:1926119)
chr2	173075434	173268008	2q31.1	2q31.1	609479	ZAK, MLTK, MRK, SFMMP, CNM6	Leucine zipper- and sterile alpha motif-containing kinase	MAP3K20	51776	ENSG00000091436		Centronuclear myopathy 6 with fiber-type disproportion, 617760 (3), Autosomal recessive; Split-foot malformation with mesoaxial polydactyly, 616890 (3), Autosomal recessive	Map3k20 (MGI:2443258)
chr2	173354832	173368989	2q31	2q31.1	609937	CDCA7, JPO1, ICF3	Cell division cycle-associated 7	CDCA7	83879	ENSG00000144354		Immunodeficiency-centromeric instability-facial anomalies syndrome 3, 616910 (3)	Cdca7 (MGI:1914203)
chr2	173906458	173965701	2q31	2q31.1	601804	SP3	Sp3 transcription factor	SP3	6670	ENSG00000172845			Sp3 (MGI:1277166)
chr2	174072446	174248669	2q31.1	2q31.1	611175	OLA1, GTBP9	OBG-like ATPase 1	OLA1	29789	ENSG00000138430			Ola1 (MGI:1914309)
chr2	174348149	174395714	2q31.1	2q31.1	605228	CIR1	CBF1-interacting corepressor	CIR1	9541	ENSG00000138433			Cir1 (MGI:1914185)
chr2	174395728	174430073	2q31.1	2q31.1	614967	SCRN3, SES3	Secernin 3	SCRN3	79634	ENSG00000144306			Scrn3 (MGI:1921866)
chr2	174559573	174682898	2q31.1	2q31.1	602357	WIPF1, WASPIP, WIP, WAS2	WAS/WASL-interacting protein family, member 1	WIPF1	7456	ENSG00000115935	mutation identified in 1 WAS2 patient	?Wiskott-Aldrich syndrome 2, 614493 (3)	Wipf1 (MGI:2178801)
chr2	174747591	174764471	2q24-q32	2q31.1	100690	CHRNA1, ACHRD, CMS1B, CMS1A	Cholinergic receptor, nicotinic, alpha polypeptide-1, muscle	CHRNA1	1134	ENSG00000138435		Multiple pterygium syndrome, lethal type, 253290 (3), Autosomal recessive; Myasthenic syndrome, congenital, 1A, slow-channel, 601462 (3), Autosomal dominant; Myasthenic syndrome, congenital, 1B, fast-channel, 608930 (3), Autosomal recessive, Autosomal dominant	Chrna1 (MGI:87885)
chr2	174799313	175005378	2q31-q32.1	2q31.1	118423	CHN1, CHN, ARHGAP2, RHOGAP2, DURS2	Chimerin 1 (GTPase-activating protein, rho, 2)	CHN1	1123	ENSG00000128656		Duane retraction syndrome 2, 604356 (3)	Chn1 (MGI:1915674)
chr2	175072249	175168205	2q32	2q31.1	123811	ATF2, CREB2	Activating transcription factor 2	ATF2	1386	ENSG00000115966			Atf2 (MGI:109349)
chr2	175176257	175181761	2q31.1	2q31.1	602736	ATP5G3	ATP synthase, mitochondrial, C subunit-3	ATP5MC3	518	ENSG00000154518			Atp5g3 (MGI:2442035)
chr2	175923861	176002900	2q31	2q31.1	610236	LNP, KIAA1715	Lunapark	LNPK	80856	ENSG00000144320			Lnpk (MGI:1918115)
chr2	176080106	176083961	2q31-q32	2q31.1	142991	EVX2	Even-skipped homeo box-2	EVX2	344191	ENSG00000174279	13kb 5' to HOX4I		Evx2 (MGI:95462)
chr2	176087486	176095937	2q31-q32	2q31.1	142989	HOXD13, HOX4I, SPD1, BDSD	Homeo box-D13	HOXD13	3239	ENSG00000128714	mutation identified in 1 BDSD family	Brachydactyly, type D, 113200 (3), Autosomal dominant; Brachydactyly, type E, 113300 (3), Autosomal dominant; ?Brachydactyly-syndactyly syndrome, 610713 (3); Syndactyly, type V, 186300 (3), Autosomal dominant; Synpolydactyly 1, 186000 (3), Autosomal dominant	Hoxd13 (MGI:96205)
chr2	176099801	176100759	2q31-q32	2q31.1	142988	HOXD12, HOX4H	Homeo box-D12	HOXD12	3238	ENSG00000170178	upstream from HOX4A-G		Hoxd12 (MGI:96204)
chr2	176107355	176109587	2q31-q32	2q31.1	142986	HOXD11, HOX4F	Homeo box-D11	HOXD11	3237	ENSG00000128713			Hoxd11 (MGI:96203)
chr2	176116763	176119941	2q31-q32	2q31.1	142984	HOXD10, HOX4D	Homeo box-D10	HOXD10	3236	ENSG00000128710		Charcot-Marie-Tooth disease, foot deformity of, 192950 (3), Autosomal dominant; Vertical talus, congenital, 192950 (3), Autosomal dominant	Hoxd10 (MGI:96202)
chr2	176122684	176124916	2q31-q32	2q31.1	142982	HOXD9, HOX4C	Homeo box-D9	HOXD9	3235	ENSG00000128709			Hoxd9 (MGI:96210)
chr2	176129693	176132694	2q31-q32	2q31.1	142985	HOXD8, HOX4E	Homeo box-D8	HOXD8	3234	ENSG00000175879			Hoxd8 (MGI:96209)
chr2	176150302	176150411	2q31	2q31.1	611576	MIR10B, MIRN10B	Micro RNA 10B	MIR10B	406903				
chr2	176150393	176156077	2q31-q32	2q31.1	142981	HOXD4, HOX4B	Homeo box-D4	HOXD4	3233	ENSG00000278500			Hoxd4 (MGI:96208)
chr2	176157162	176173101	2q31-q32	2q31.1	142980	HOXD3, HOX4A	Homeo box-D3	HOXD3	3232	ENSG00000128652			Hoxd3 (MGI:96207)
chr2	176188578	176190906	2q31-q32	2q31.1	142987	HOXD1, HOX4G	Homeo box-D1	HOXD1	3231	ENSG00000128645			Hoxd1 (MGI:96201)
chr2	176269394	176338024	2q31.1	2q31.1	608555	MTX2	Metaxin 2	MTX2	10651	ENSG00000128654			Mtx2 (MGI:1859652)
chr2	177100000	179700000	2q31.2		612345	DEL2q31	Chromosome 2q31.2 deletion syndrome				contiguous gene deletion syndrome	Chromosome 2q31.2 deletion syndrome, 612345 (4)	
chr2	177212693	177223958	2q31.2	2q31.2	605372	HNRPA3, D10S102, FBRNP	Heterogeneous nuclear ribonucleoprotein A3	HNRNPA3	220988	ENSG00000170144			
chr2	177230302	177265130	2q31	2q31.2	600492	NFE2L2, NRF2, IMDDHH	Nuclear factor, erythroid-derived 2-like 2	NFE2L2	4780	ENSG00000116044		Immunodeficiency, developmental delay, and hypohomocysteinemia, 617744 (3), Autosomal dominant	Nfe2l2 (MGI:108420)
chr2	177392742	177543835	2q31	2q31.2	603051	AGPS, ADHAPS, RCDP3	Alkylglycerone-phosphate synthase	AGPS	8540	ENSG00000018510		Rhizomelic chondrodysplasia punctata, type 3, 600121 (3), Autosomal recessive	Agps (MGI:2443065)
chr2	177623248	178108338	2q31.2	2q31.2	604961	PDE11A, PDE11A1, PDE11A2, PDE11A3, PPNAD2	Phosphodiesterase 11A	PDE11A	50940	ENSG00000128655		Pigmented nodular adrenocortical disease, primary, 2, 610475 (3), Autosomal dominant	Pde11a (MGI:3036251)
chr2	178112408	178129655	2q31.2	2q31.2	608888	RBM45	RNA binding motif protein 45	RBM45	129831	ENSG00000155636			Rbm45 (MGI:2387367)
chr2	178194464	178399432	2q32.1	2q31.2	606734	OSBPL6, ORP6	Oxysterol-binding protein-like protein 6	OSBPL6	114880	ENSG00000079156			Osbpl6 (MGI:2139014)
chr2	178431413	178451239	2q31.3	2q31.2	603424	PRKRA, PACT, RAX, DYT16	Protein kinase, interferon-inducible double-stranded RNA-dependent activator	PRKRA	8575	ENSG00000180228		Dystonia 16, 612067 (3), Autosomal recessive	Prkra (MGI:1344375)
chr2	178450591	178467548	2q31.1-q31.3	2q31.2	610219	PJVK, DFNB59	Pejvakin	PJVK	494513	ENSG00000204311		Deafness, autosomal recessive 59, 610220 (3), Autosomal recessive	Pjvk (MGI:2685847)
chr2	178463663	178480816	2q31.2	2q31.2	607062	FKBP7, FKBP23	FK506-binding protein 7	FKBP7	51661	ENSG00000079150			Fkbp7 (MGI:1336879)
chr2	178480453	178516323	2q31.2	2q31.2	607774	PLEKHA3, FAPP1	Pleckstrin homology domain-containing protein, family A, member 3	PLEKHA3	65977	ENSG00000116095			Plekha3 (MGI:1932515)
chr2	178525988	178807422	2q31	2q31.2	188840	TTN, CMD1G, TMD, LGMD2J, MPRM, HMERF, SALMY	Titin	TTN	7273	ENSG00000155657		Cardiomyopathy, dilated, 1G, 604145 (3); Cardiomyopathy, familial hypertrophic, 9, 613765 (3), Autosomal dominant; Muscular dystrophy, limb-girdle, type 2J, 608807 (3), Autosomal recessive; Myopathy, proximal, with early respiratory muscle involvement, 603689 (3); Salih myopathy, 611705 (3), Autosomal recessive; Tibial muscular dystrophy, tardive, 600334 (3), Autosomal dominant	Ttn (MGI:98864)
chr2	178825307	179050130	2q31	2q31.2	616031	CCDC141, CAMDI	Coiled-coil domain-containing protein 141	CCDC141	285025	ENSG00000163492			Ccdc141 (MGI:1919735)
chr2	179441981	179864549	2q31.2-q31.3	2q31.2-q31.3	612344	ZNF385B, ZFN533	Zinc finger protein 385B	ZNF385B	151126	ENSG00000144331			Zfp385b (MGI:2444734)
chr2	179700000	188500000	2q31.3-q32.1		187370	DA10	Arthrogryposis, distal, type 10				max lod at D2S364	Arthrogryposis, distal, type 10, 187370 (2), Autosomal dominant	
chr2	179860835	179860907	2q31.3	2q31.3	614488	MIR1258	Micro RNA 1258	MIR1258	100302172		on opposite strand from ZNF385B		
chr2	179944875	180007295	2q31.3	2q31.3	615186	CWC2, KIAA1604, NCM	CWC22 spliceosome-associated protein, X. cerevisiae, homolog of	CWC22	57703	ENSG00000163510			Cwc22 (MGI:2136773)
chr2	180692103	180916938	2q31.3	2q31.3	615568	SCHLAP1, PCAT114, LINC00913	SWI/SNF complex antagonist associated with prostate cancer 1, noncoding	SCHLAP1	101669767				
chr2	180980384	181063426	2q32.1	2q31.3	604151	UBE2E3, UBCH9	Ubiquitin-conjugating enzyme E2E 3	UBE2E3	10477	ENSG00000170035			Ube2e3 (MGI:107412)
chr2	181456891	181538927	2q31-q32	2q31.3	192975	ITGA4, CD49D	Integrin, alpha-4 (antigen CD49D, alpha-4 subunit of VLA-4 receptor)	ITGA4	3676	ENSG00000115232			Itga4 (MGI:96603)
chr2	181536671	181657106	2q31.3	2q31.3	608381	CERKL, RP26	Ceramide kinase-like	CERKL	375298	ENSG00000188452		Retinitis pigmentosa 26, 608380 (3)	Cerkl (MGI:3037816)
chr2	181668294	181680664	2q32	2q31.3	601724	NEUROD1, NIDDM	Neurogenic differentiation 1	NEUROD1	4760			{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant; Maturity-onset diabetes of the young 6, 606394 (3)	Neurod1 (MGI:1339708)
chr2	181891715	181930737	2q31.3	2q31.3	118990	SSFA2, CS1	Sperm-specific antigen 2	SSFA2	6744	ENSG00000138434			Ssfa2 (MGI:1917849)
chr2	181954240	182131381	2q32.1	2q31.3-q32.1	613240	PPP1R1C, IPP5	Protein phosphatase 1, regulatory subunit 1C	PPP1R1C	151242	ENSG00000150722			Ppp1r1c (MGI:1923185)
chr2	182100000	196600000	2q32.1-q32.3		602087	ARVD4	Arrhythmogenic right ventricular dysplasia 4	ARVD4	425			Arrhythmogenic right ventricular dysplasia 4, 602087 (2), Autosomal dominant	
chr2	182100000	188500000	2q32.1		612361	SCZD14	Schizophrenia 14		100196913		associated with rs1344706	{Schizophrenia, susceptibility to, 14}, 612361 (2)	
chr2	182140034	182523374	2q32.1	2q32.1	171890	PDE1A	Phosphodiesterase-1A	PDE1A	5136	ENSG00000115252			Pde1a (MGI:1201792)
chr2	182715978	182780024	2p23.1-p22.1	2q32.1	607987	DNAJC10, ERDJ5, JPDI	DNAJ/HSP40 homolog, subfamily C, member 10	DNAJC10	54431	ENSG00000077232			Dnajc10 (MGI:1914111)
chr2	182833274	182866769	2q31-q33	2q32.1	605083	FRZB, FRZB1, SRFP3, OS1	Frizzled-related protein	FRZB	2487	ENSG00000162998		{Osteoarthritis susceptibility 1}, 165720 (3), Multifactorial	Frzb (MGI:892032)
chr2	182924850	183038857	2q32.1-q32.2	2q32.1	604891	NCKAP1, NAP1	NCK-associated protein 1	NCKAP1	10787	ENSG00000061676			Nckap1 (MGI:1355333)
chr2	183117479	183161683	2q32.1	2q32.1	608140	NUP35, NP44	Nucleoporin, 35kD	NUP35	129401	ENSG00000163002			Nup35 (MGI:1916732)
chr2	184598365	184939486	2q32.1	2q32.1	612282	ZNF804A, C2orf10	Zinc finger protein 804A	ZNF804A	91752	ENSG00000170396			Zfp804a (MGI:2442949)
chr2	185738835	185833288	2q32.1	2q32.1	615796	FSIP2	Fibrous sheath-interacting protein 2	FSIP2	401024	ENSG00000188738			Fsip2 (MGI:2664111)
chr2	186590062	186680901	2q31	2q32.1	193210	ITGAV, VNRA	Integrin, alpha-V (vitronectin receptor, alpha polypeptide)	ITGAV	3685	ENSG00000138448			Itgav (MGI:96608)
chr2	187341962	187448303	2q31-q32	2q32.1	114190	CALCRL, CGRPR, CRLR	Calcitonin receptor-like	CALCRL	10203	ENSG00000064989			Calcrl (MGI:1926944)
chr2	187464229	187554504	2q31-q32.1	2q32.1	152310	TFPI, LACI	Tissue factor pathway inhibitor (lipoprotein-associated coagulation inhibitor)	TFPI	7035	ENSG00000003436			Tfpi (MGI:1095418)
chr2	188291668	188595925	2q32.2-q33	2q32.1-q32.2	608165	GULP1, CED6	PTB domain-containing engulfment adaptor protein 1	GULP1	51454	ENSG00000144366			Gulp1 (MGI:1920407)
chr2	188733737	188790103	2q33	2q32.2	606423	DIRC1	Disrupted in renal cancer 1	DIRC1	116093	ENSG00000174325			
chr2	188974372	189012745	2q32.2	2q32.2	120180	COL3A1, EDSVASC	Collagen III, alpha-1 polypeptide	COL3A1	1281	ENSG00000168542	in same 35kb segment as COL5A2	Ehlers-Danlos syndrome, vascular type, 130050 (3), Autosomal dominant	Col3a1 (MGI:88453)
chr2	189031914	189225300	2q32.2	2q32.2	120190	COL5A2, EDSCL2	Collagen V, alpha-2 polypeptide	COL5A2	1290	ENSG00000204262	very close to COL3A1	Ehlers-Danlos syndrome, classic type, 2, 130010 (3), Autosomal dominant	Col5a2 (MGI:88458)
chr2	189560589	189580810	2q32	2q32.2	604653	SLC40A1, SLC11A3, FPN1, IREG1, HFE4	Solute carrier family 40 (iron-regulated transporter), member 1	SLC40A1	30061	ENSG00000138449		Hemochromatosis, type 4, 606069 (3), Autosomal dominant	Slc40a1 (MGI:1315204)
chr2	189674291	189763058	2q32.2	2q32.2	609803	FLJ25415	FLJ25415 gene	ANKAR	150709	ENSG00000151687			Ankar (MGI:2442559)
chr2	189766266	189784370	2q32.2	2q32.2	610073	ORMDL1	ORM1-like protein 1	ORMDL1	94101	ENSG00000128699	pseudogene on 10p14		Ormdl1 (MGI:2181669)
chr2	189784084	189877628	2q31-q33	2q32.2	600258	PMS1, PMSL1, HNPCC3	Postmeiotic segregation increased, S. cerevisiae, like 1	PMS1	5378	ENSG00000064933			Pms1 (MGI:1202302)
chr2	189879478	190203483	2q32.2	2q32.2	615117	C2orf88, SMAKAP	Small membrane protein kinase A-anchoring protein	C2orf88	84281	ENSG00000187699			1700019D03Rik (MGI:1914330)
chr2	190055699	190062728	2q32.2	2q32.2	601788	GDF8, MSTN, MSLHP	Growth differentiation factor-8 (myostatin)	MSTN	2660	ENSG00000138379		Muscle hypertrophy, 614160 (3)	Mstn (MGI:95691)
chr2	190204633	190320044	2q32.2	2q32.2	610690	HIBCH	3-hydroxyisobutyryl-CoA hydrolase	HIBCH	26275	ENSG00000198130		3-hydroxyisobutryl-CoA hydrolase deficiency, 250620 (3), Autosomal recessive	Hibch (MGI:1923792)
chr2	190343469	190371664	2q32	2q32.2	147263	INPP1	Inositol polyphosphate-1-phosphatase	INPP1	3628	ENSG00000151689			Inpp1 (MGI:104848)
chr2	190408354	190502314	2q32.2	2q32.2	613476	MFSD6, MMR2	Major facilitator superfamily domain-containing protein 6	MFSD6	54842	ENSG00000151690			Mfsd6 (MGI:1922925)
chr2	190454087	190607125	2q32.2	2q32.2	616497	NEMP2, TMEM194B	Nuclear envelope integral membrane protein 2	NEMP2	100131211	ENSG00000189362			Nemp2 (MGI:2444113)
chr2	190648859	190692765	2q32.3-q33	2q32.2	600800	NAB1	NGFI-A-binding protein, ERG1-binding protein	NAB1	4664	ENSG00000138386			Nab1 (MGI:107564)
chr2	190880820	190965551	2q32-q34	2q32.2	138280	GLS, GLS1	Glutaminase	GLS	2744	ENSG00000115419			Gls (MGI:95752)
chr2	190968988	191014249	2q32.2-q32.3	2q32.2	600555	STAT1, CANDF7, IMD31A, IMD31B, IMD31C	Signal transducer and activator of transcription-1	STAT1	6772	ENSG00000115415		Immunodeficiency 31A, mycobacteriosis, autosomal dominant, 614892 (3), Autosomal dominant; Immunodeficiency 31B, mycobacterial and viral infections, autosomal recessive, 613796 (3), Autosomal recessive; Immunodeficiency 31C, autosomal dominant, 614162 (3), Autosomal dominant	Stat1 (MGI:103063)
chr2	191029575	191172683	2q32.2-q32.3	2q32.2-q32.3	600558	STAT4, SLEB11	Signal transducer and activator of transcription-4	STAT4	6775	ENSG00000138378		{Systemic lupus erythematosus, susceptibility to, 11}, 612253 (3)	Stat4 (MGI:103062)
chr2	191245275	191425388	2q32	2q32.3	606537	MYO1B	Myosin IB	MYO1B	4430	ENSG00000128641			Myo1b (MGI:107752)
chr2	191678071	191688521	2q32.3	2q32.3	612103	OBFC2A, SSB2	Oligonucleotide/oligosaccharide-binding fold-containing protein 2A	NABP1	64859	ENSG00000173559			Nabp1 (MGI:1923258)
chr2	191834304	191847279	2q32-q33	2q32.3	606728	CAVIN2, SDPR, SDR	Caveolae-associated protein 2	CAVIN2	8436	ENSG00000168497			Cavin2 (MGI:99513)
chr2	191948299	192194932	2q32-q33	2q32.3	605734	TMEFF2, HPP1, TR	Transmembrane protein with EGF-like and 2 follistatin-like domains 2	TMEFF2	23671	ENSG00000144339			Tmeff2 (MGI:1861735)
chr2	192749844	192776898	2q32	2q32.3	605443	PCGEM1	Prostate-specific gene PCGEM1	PCGEM1	64002				
chr2	195737603	196068811	2q33.1	2q32.3	610061	DNAH7, KIAA0944	Dynein, axonemal, heavy chain 7	DNAH7	56171	ENSG00000118997			Dnah7c,Dnah7b,Dnah7a (MGI:3639762,MGI:2684953,MGI:2685838)
chr2	196133582	196176502	2q32.3	2q32.3	604727	STK17B, DRAK2	Serine/threonine protein kinase 17b	STK17B	9262	ENSG00000081320			Stk17b (MGI:2138162)
chr2	196194369	196593691	2q32.3	2q32.3	617245	HECW2, NEDL2, KIAA1301, NDHSAL	HECT, C2, and WW domains-containing E3 ubiquitin-protein ligase 2	HECW2	57520	ENSG00000138411		Neurodevelopmental disorder with hypotonia, seizures, and absent language, 617268 (3), Autosomal dominant	Hecw2 (MGI:2685817)
chr2	196600000	202500000	2q33.1		612586	ANIB9	Aneurysm, intracranial berry, 9		100271688		associated with rs700651	{Aneurysm, intracranial berry, 9}, 612586 (2)	
chr2	196600000	220700000	2q33-q35		177500	CHE2	Cholinesterase, serum, 2				linkage to chr. 16 markers?		
chr2	196600000	230100000	2q33-q36		614280	EJM9	Epilepsy, juvenile myoclonic, susceptibility to, 9		100750238		max lod at D2S2248	{Epilepsy, juvenile myoclonic, susceptibility to, 9}, 614280 (2), Autosomal dominant	
chr2	196600000	208200000	2q33		610439	RLS4	Restless legs syndrome, susceptibility to, 4		100188813		between D2S311 and D2S317	{Restless legs syndrome 4}, 610439 (2)	
chr2	196763031	196799767	2q33.1	2q33.1	604888	GTF3C3, TFIIIC102	General transcription factor 3C, polypeptide 3	GTF3C3	9330	ENSG00000119041			Gtf3c3 (MGI:2138383)
chr2	196833003	196926994	2q33.1	2q33.1	611655	PGAP1, MRT42	Post-GPI attachment to proteins 1	PGAP1	80055	ENSG00000197121		Mental retardation, autosomal recessive 42, 615802 (3), Autosomal recessive	Pgap1 (MGI:2443342)
chr2	197391973	197435092	2q33.1	2q33.1	605590	SF3B1, SF3B155, SAP155, MDS	Splicing factor 3B, subunit 1	SF3B1	23451	ENSG00000115524		Myelodysplastic syndrome, somatic, 614286 (3)	Sf3b1 (MGI:1932339)
chr2	197486583	197500273	2q33.1	2q33.1	118190	HSPD1, SPG13, HSP60, HLD4	Heat-shock 60kD protein 1	HSPD1	3329	ENSG00000144381		Leukodystrophy, hypomyelinating, 4, 612233 (3), Autosomal recessive; Spastic paraplegia 13, autosomal dominant, 605280 (3), Autosomal dominant	Hspd1 (MGI:96242)
chr2	197499996	197503462	2q33.1	2q33.1	600141	HSPE1, HSP10	Heat-shock 10kD protein	HSPE1	3336	ENSG00000115541			Hspe1 (MGI:104680)
chr2	197515570	197553698	2q33.1	2q33.1	609361	MOB4, MOBKL3, PREI3, MOB1, MOB3	MOB family, member 4	MOB4	25843	ENSG00000115540			Mob4 (MGI:104899)
chr2	197705303	197708389	2q33.1	2q33.1	609728	MARS2, SPAX3, COXPD25	Methionyl-tRNA synthetase 2	MARS2	92935	ENSG00000247626	mutation identified in 1 COXPD25 family	?Combined oxidative phosphorylation deficiency 25, 616430 (3), Autosomal recessive; Spastic ataxia 3, autosomal recessive, 611390 (3), Autosomal recessive	Mars2 (MGI:2444136)
chr2	197726878	197786311	2q33	2q33.1	606165	BOLL, BOULE	BOL-like (Boule, Drosophila, homolog of)	BOLL	66037	ENSG00000152430			Boll (MGI:1922638)
chr2	197804701	198149883	2q33	2q33.1	600597	PLDL1, PLCE, PLCL	Phospholipase C-like 1	PLCL1	5334	ENSG00000115896			Plcl1 (MGI:3036262)
chr2	199269499	199471265	2q33	2q33.1	608148	SATB2, KIAA1034, GLSS	Special AT-rich sequence-binding protein 2	SATB2	23314	ENSG00000119042		Glass syndrome, 612313 (3), Autosomal dominant	Satb2 (MGI:2679336)
chr2	199663331	199851179	2q33.1	2q33.1	614308	FTCDNL1, FONG	Formiminotransferase cyclodeaminase N-terminal like	FTCDNL1	348751	ENSG00000226124			
chr2	199955316	199964124	2q33.1	2q33.1	617267	MAIP1, C2orf47	Matrix AAA peptidase-interacting protein 1	MAIP1	79568	ENSG00000162972			Maip1 (MGI:1915365)
chr2	200305880	200482262	2q33.1	2q33.1	613817	SPATS2L, SGNP	Spermatogenesis-associated serine-rich protein 2-like	SPATS2L	26010	ENSG00000196141			Spats2l (MGI:1914448)
chr2	200510197	200584094	2q33.1	2q33.1	612425	SGOL2, SGO2, TRIPIN	Shugoshin-like 2	SGO2	151246	ENSG00000163535			Sgo2a,Sgo2b (MGI:1098767,MGI:3644562)
chr2	200585951	200677063	2q33	2q33.1	602841	AOX1	Aldehyde oxidase-1	AOX1	316	ENSG00000138356			Aox1 (MGI:88035)
chr2	200853008	200864743	2q33	2q33.1	601951	CLK1, CLK, STY	CDC-like kinase 1	CLK1	1195	ENSG00000013441			Clk1 (MGI:107403)
chr2	200870906	200889332	2q33	2q33.1	615811	PPIL3	Peptidyl-prolyl isomerase-like 3	PPIL3	53938	ENSG00000240344			Ppil3 (MGI:1917475)
chr2	200889326	200903931	2q33	2q33.1	605778	NIF3L1	Ngg1 interacting factor 3, S. pombe, homolog of, like 1	NIF3L1	60491	ENSG00000196290			Nif3l1 (MGI:1929485)
chr2	200910170	200963700	2q33	2q33.1	601182	ORC2, ORC2L	Origin recognition complex, subunit 2, S. cerevisiae, homolog of	ORC2	4999	ENSG00000115942			Orc2 (MGI:1328306)
chr2	201071738	201085749	2q31.3	2q33.1	603839	NDUFB3	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 3	NDUFB3	4709	ENSG00000119013	pseudogenes on chr. 1, 9, and 14	Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufb3 (MGI:1913745)
chr2	201116103	201172687	2q33	2q33.1	603599	CFLAR, FLIP, CASPER, FLAME1, CASH	CASP8- and FADD-like apoptosis regulator	CFLAR	8837	ENSG00000003402			Cflar (MGI:1336166)
chr2	201182880	201229405	2q33-q34	2q33.1	601762	CASP10, MCH4, ALPS2	Caspase 10, apoptosis-related cysteine protease	CASP10	843	ENSG00000003400		Autoimmune lymphoproliferative syndrome, type II, 603909 (3), Autosomal dominant; Gastric cancer, somatic, 613659 (3); Lymphoma, non-Hodgkin, somatic, 605027 (3)	
chr2	201233442	201287710	2q33	2q33.1	601763	CASP8, MCH5, ALPS2B	Caspase 8, apoptosis-related cysteine protease	CASP8	841	ENSG00000064012	mutation identified in 1 ALPS2B family	?Autoimmune lymphoproliferative syndrome, type IIB, 607271 (3), Autosomal recessive; {Breast cancer, protection against}, 114480 (3), Autosomal dominant; Hepatocellular carcinoma, somatic, 114550 (3); {Lung cancer, protection against}, 211980 (3), Autosomal recessive	Casp8 (MGI:1261423)
chr2	201377206	201451595	2q33-q34	2q33.1	607334	TRAK2, GRIF1, ALS2CR3, KIAA0549, OIP98	Gamma-aminobutyric acid receptor-interacting factor 1	TRAK2	66008	ENSG00000115993			Trak2 (MGI:1918077)
chr2	201451668	201480850	2q33-q34	2q33.1	607333	STRADB, ILPIP, ALS2CR2	STE20-related kinase adaptor beta	STRADB	55437	ENSG00000082146	pseudogenes on chromosomes 1 and 9		Stradb (MGI:2144047)
chr2	201620183	201643528	2q33.2	2q33.1	614423	TMEM237, ALS2CR4, JBTS14	Transmembrane protein 237	TMEM237	65062	ENSG00000155755		Joubert syndrome 14, 614424 (3), Autosomal recessive	Tmem237 (MGI:2138365)
chr2	201644873	201700262	2q31	2q33.1	606575	MPP4, DLG6	Membrane protein, palmitoylated 4	MPP4	58538	ENSG00000082126			Mpp4 (MGI:2386681)
chr2	201700262	201781171	2q33	2q33.1	606352	ALS2, ALSJ, PLSJ, IAHSP	Alsin	ALS2	57679	ENSG00000003393		Amyotrophic lateral sclerosis 2, juvenile, 205100 (3), Autosomal recessive; Primary lateral sclerosis, juvenile, 606353 (3), Autosomal recessive; Spastic paralysis, infantile onset ascending, 607225 (3), Autosomal recessive	Als2 (MGI:1921268)
chr2	201790323	201895549	2q33.1	2q33.1	616147	CDK15, PFTAIRE2, ALS2CR7	Cyclin-dependent kinase 15	CDK15	65061	ENSG00000138395			Cdk15 (MGI:3583944)
chr2	202034586	202038436	2q33	2q33.1	603410	FZD7	Frizzled, Drosophila, homolog of, 7	FZD7	8324	ENSG00000155760			Fzd7 (MGI:108570)
chr2	202206179	202238598	2q32.2-q33	2q33.1	601912	SUMO1, UBL1, SMT3, OFC10	Small ubiquitin-like modifier 1	SUMO1	7341	ENSG00000116030	mutation identified in 1 OFC10 patient	?Orofacial cleft 10, 613705 (3), Isolated cases	Sumo1 (MGI:1197010)
chr2	202265715	202303660	2p33.1	2q33.1	616742	NOP58, NOP5	Nop58, S. cerevisiae, homolog of	NOP58	51602	ENSG00000055044			Nop58 (MGI:1933184)
chr2	202376309	202567750	2q33	2q33.1-q33.2	600799	BMPR2, PPH1, POVD1	Bone morphogenetic receptor, type II	BMPR2	659	ENSG00000204217		Pulmonary hypertension, familial primary, 1, with or without HHT, 178600 (3), Autosomal dominant; Pulmonary hypertension, primary, fenfluramine or dexfenfluramine-associated, 178600 (3), Autosomal dominant; Pulmonary venoocclusive disease 1, 265450 (3), Autosomal dominant	Bmpr2 (MGI:1095407)
chr2	202878918	202912225	2q33.2	2q33.2	616620	WDR12	WD repeat-containing protein 12	WDR12	55759	ENSG00000138442			Wdr12 (MGI:1927241)
chr2	202912217	202988260	2q33	2q33.2	607586	ALS2CR8, CARF	Amyotrophic lateral sclerosis 2 chromosome region, candidate 8 (calcium response factor)	CARF	79800	ENSG00000138380			Carf (MGI:2182269)
chr2	203013783	203225193	2q33-q34	2q33.2	609816	NBEAL1, ALS2CR17	Neurobeachin-like 1	NBEAL1	65065	ENSG00000144426			Nbeal1 (MGI:2444343)
chr2	203706474	203739755	2q33-q34	2q33.2	186760	CD28	CD28 antigen (Tp44)	CD28	940	ENSG00000178562			Cd28 (MGI:88327)
chr2	203867787	203873959	2q33	2q33.2	123890	CTLA4, IDDM12, CELIAC3, ALPS5	Cytotoxic T-lymphocyte-associated serine esterase-4	CTLA4	1493	ENSG00000163599		Autoimmune lymphoproliferative syndrome, type V, 616100 (3), Autosomal dominant; {Celiac disease, susceptibility to, 3}, 609755 (3); {Diabetes mellitus, insulin-dependent, 12}, 601388 (3); {Hashimoto thyroiditis}, 140300 (3), Autosomal dominant; {Systemic lupus erythematosus, susceptibility to}, 152700 (3), Autosomal dominant	Ctla4 (MGI:88556)
chr2	203936747	203961576	2q33	2q33.2	604558	ICOS, AILIM, CVID1	Inducible costimulator	ICOS	29851	ENSG00000163600		Immunodeficiency, common variable, 1, 607594 (3), Autosomal recessive	Icos (MGI:1858745)
chr2	204100000	208200000	2q33.3		610839	OS4, GOA1	Osteoarthritis susceptibility 4		100188821		max lod at D2S2358	{Osteoarthritis susceptibility 4}, 610839 (2)	
chr2	205682499	205798132	2q34	2q33.3	602070	NRP2, VEGF1265R2, NPN2	Neuropilin 2	NRP2	8828	ENSG00000118257			Nrp2 (MGI:1100492)
chr2	206123078	206159518	2q33-q34	2q33.3	157655	NDUFS1	NADH dehydrogenase (ubiquinone) Fe-S protein 1, 75kD	NDUFS1	4719	ENSG00000023228		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufs1 (MGI:2443241)
chr2	206159593	206162928	2q33-q34	2q33.3	600655	EEF1B2, EEF1B1	Eukaryotic translation elongation factor-1, beta-2	EEF1B2	1933	ENSG00000114942	pseudogene on chr.15		Eef1b2 (MGI:1929520)
chr2	206175315	206218046	2q33.3	2q33.3	600239	GPR1	G protein-coupled receptor-1	GPR1	2825	ENSG00000183671	conflicting assignment to 15q21.6		Gpr1 (MGI:2385324)
chr2	206203375	206266242	2q33.3	2q33.3	617636	GPR1AS	GPR1 antisense RNA	GPR1-AS	101669764				
chr2	206273571	206314437	2q33.3	2q33.3	617059	ZDBF2, KIAA1571	Zinc finger DBF domain-containing protein 2	ZDBF2	57683	ENSG00000204186			Zdbf2 (MGI:1921134)
chr2	206443543	206621129	2q33	2q33.3	603710	ADAM23, MDC3	A disintegrin and metalloproteinase domain 23	ADAM23	8745	ENSG00000114948			Adam23 (MGI:1345162)
chr2	206765387	206796188	2q33.3	2q33.3	612322	FASTKD2, KIAA0971	FAST kinase domains 2	FASTKD2	22868	ENSG00000118246	mutation identified in 1 family	?Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Fastkd2 (MGI:1922869)
chr2	207074136	207173850	2q32	2q33.3	604865	KLF7, UKLF	Kruppel-like factor 7	KLF7	8609	ENSG00000118263			Klf7 (MGI:1935151)
chr2	207529891	207605988	2q32.3-q34	2q33.3	123810	CREB1	cAMP-response element-binding protein-1	CREB1	1385	ENSG00000118260	fusion gene with EWSR1	Histiocytoma, angiomatoid fibrous, somatic, 612160 (3)	Creb1 (MGI:88494)
chr2	207580630	207626052	2q33.3	2q33.3	615257	METTL21A, FAM119A	Methyltransferase-like 21A	METTL21A	151194	ENSG00000144401			Mettl21a (MGI:1914349)
chr2	207753888	207769562	2q33-q34	2q33.3	601723	FZD5	Polarity gene 'frizzled,' Drosophila, homolog of	FZD5	7855	ENSG00000163251			Fzd5 (MGI:108571)
chr2	208121606	208124588	2q33-q35	2q33.3	123690	CRYGD, CRYG4, CTRCT4, CACA, CCA3, PCC	Crystallin, gamma D	CRYGD	1421	ENSG00000118231		Cataract 4, multiple types, 115700 (3), Autosomal dominant	Crygd (MGI:88524)
chr2	208128136	208139099	2q33-q35	2q33.3	123680	CRYGC, CRYG3, CTRCT2, CCL	Crystallin, gamma C	CRYGC	1420	ENSG00000163254		Cataract 2, multiple types, 604307 (3), Autosomal dominant	Crygc (MGI:88523)
chr2	208142572	208146326	2q33-q35	2q33.3	123670	CRYGB, CRYG2, CTRCT39	Crystallin, gamma B	CRYGB	1419	ENSG00000182187		Cataract 39, multiple types, autosomal dominant, 615188 (3), Autosomal dominant	Crygb (MGI:88522)
chr2	208160739	208163572	2q33-q35	2q33.3	123660	CRYGA, CRYG1	Crystallin, gamma A	CRYGA	1418	ENSG00000168582			Cryga (MGI:88521)
chr2	208165346	208190257	2q34	2q33.3	615536	C2orf80, GONDA1	Chromosome 2 open reading frame 80	C2orf80	389073	ENSG00000188674			D630023F18Rik (MGI:2138198)
chr2	208200000	230100000	2q34-q36		185900	DUP2q35, C2DUPq35, SDTY1, SD1	Chromosome 2q35 duplication syndrome (syndactyly, type I)					Syndactyly, type 1, with or without craniosynostosis, 185900 (4), Autosomal dominant	
chr2	208200000	214500000	2q34		601318	IDDM13	Insulin-dependent diabetes mellitus-13	IDDM13	3412			{Diabetes mellitus, insulin-dependent, 13}, 601318 (2)	
chr2	208200000	220700000	2q34-q35		607966	SLEN2	Systemic lupus erythematosus with nephritis, susceptibility to, 2	SLEN2	192679			{Systemic lupus erythematosus with nephritis, susceptibility to, 2}, 607966 (2)	
chr2	208200000	214500000	2q34		186860	TCL4	T-cell leukemia/lymphoma-4	TCL4	6946			Leukemia/lymphoma, T-cell, 186860 (2)	
chr2	208236226	208255142	2q33.3	2q34	147700	IDH1	Isocitrate dehydrogenase, soluble	IDH1	3417	ENSG00000138413		{Glioma, susceptibility to, somatic}, 137800 (3)	Idh1 (MGI:96413)
chr2	208266177	208358750	2q35	2q34	609414	PIKFYVE, PIP5K3	Phosphatidylinositol kinase, FYVE-finger containing	PIKFYVE	200576	ENSG00000115020		Corneal fleck dystrophy, 121850 (3), Autosomal dominant	Pikfyve (MGI:1335106)
chr2	208359844	208494505	2q33	2q34	601469	PTHR2	Parathyroid hormone receptor 2	PTH2R	5746	ENSG00000144407			Pth2r (MGI:2180917)
chr2	209424046	209734117	2q34-q35	2q34	157130	MAP2	Microtubule-associated protein-2	MAP2	4133	ENSG00000078018			Map2 (MGI:97175)
chr2	209771924	209999299	2q35	2q34	612636	UNC80, C2orf21, KIAA1843	Unc-80 homolog, NALCN activator	UNC80	285175	ENSG00000144406		Hypotonia, infantile, with psychomotor retardation and characteristic facies 2, 616801 (3), Autosomal recessive	Unc80 (MGI:2652882)
chr2	210002564	210023362	2q32-q33.3	2q34	180480	RPE	Ribulose 5-phosphate 3-epimerase	RPE	6120	ENSG00000197713			Rpe (MGI:1913896)
chr2	210021420	210171369	2q34	2q34	613833	KANSL1L, C2orf67, MSL1V2	KAT8 regulatory NSL complex subunit 1-like	KANSL1L	151050	ENSG00000144445			Kansl1l (MGI:1915941)
chr2	210187989	210225490	2q34-q35	2q34	609576	ACADL, LCAD	Acyl-Coenzyme A dehydrogenase, long chain	ACADL	33	ENSG00000115361			Acadl (MGI:87866)
chr2	210290143	210315170	2q32.1-qter	2q34	160780	MYL1	Myosin, light polypeptide-1, alkali; skeletal, fast	MYL1	4632	ENSG00000168530			Myl1 (MGI:97269)
chr2	210431248	210477617	2q34	2q34	604155	LANCL1, GPR69A	LanC-like 1 (G protein-coupled receptor 69A)	LANCL1	10314	ENSG00000115365			Lancl1 (MGI:1336997)
chr2	210477681	210679106	2q35	2q34	608307	CPS1, PHN	Carbamoyl-phosphate synthetase 1, mitochondrial	CPS1	1373	ENSG00000021826	urea cycle enzyme	Carbamoylphosphate synthetase I deficiency, 237300 (3), Autosomal recessive; {Pulmonary hypertension, neonatal, susceptibility to}, 615371 (3); {Venoocclusive disease after bone marrow transplantation} (3)	Cps1 (MGI:891996)
chr2	211375716	212538627	2q34	2q34	600543	ERBB4, HER4, ALS19	Avian erythroblastic leukemia viral (v-erb-b2) oncogene homolog 4	ERBB4	2066	ENSG00000178568		Amyotrophic lateral sclerosis 19, 615515 (3), Autosomal dominant	Erbb4 (MGI:104771)
chr2	212999683	213155296	2q34	2q34	606234	IKZF2, ANF1A2, HELIOS	Ikaros family zinc finger 2	IKZF2	22807	ENSG00000030419			Ikzf2 (MGI:1342541)
chr2	213284368	214410500	2q34	2q34	612173	SPAG16, PF20	Sperm-associated antigen 16	SPAG16	79582	ENSG00000144451			Spag16 (MGI:1913972)
chr2	214500000	220700000	2q35		607949	MTBS1	Mycobacterium tuberculosis, susceptibility to infection by		404716			{Tuberculosis, susceptibility to}, 607949 (2)	
chr2	214500000	220700000	2q35		613016	NBLST5	Neuroblastoma, susceptibility to, 5		100306938		associated with rs6435862, rs3768716	{Neuroblastoma, susceptibility to, 5}, 613016 (2)	
chr2	214500000	230100000	2q35-q36		609153	PSHK2	Pseudohyperkalemia, familial, 2, due to red cell leak				max lod at D2S1338	Pseudohyperkalemia, familial, 2, due to red cell leak, 609153 (2), Autosomal dominant	
chr2	214725644	214809710	2q34-q35	2q35	601593	BARD1	BRCA1-associated RING domain 1	BARD1	580	ENSG00000138376		{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant	Bard1 (MGI:1328361)
chr2	214931541	215138590	2q34	2q35	607800	ABCA12, ARCI4A, ARCI4B, ICR2B, LI2	ATP-binding cassette, subfamily A, member 12	ABCA12	26154	ENSG00000144452		Ichthyosis, congenital, autosomal recessive 4A, 601277 (3), Autosomal recessive; Ichthyosis, congenital, autosomal recessive 4B (harlequin), 242500 (3), Autosomal recessive	Abca12 (MGI:2676312)
chr2	215311955	215359744	2q35	2q35	601731	ATIC, PURH, AICAR	5-aminoimidazole-4-carboxyamide ribonucleotide formyltransferase/IMP cyclohydrolase	ATIC	471	ENSG00000138363		AICA-ribosiduria due to ATIC deficiency, 608688 (3), Autosomal recessive	Atic (MGI:1351352)
chr2	215360439	215436166	2q34	2q35	135600	FN1, FN, LETS, FNZ, GFND2, SMDCF	Fibronectin-1	FN1	2335	ENSG00000115414		Glomerulopathy with fibronectin deposits 2, 601894 (3), Autosomal dominant; Plasma fibronectin deficiency, 614101 (1), Autosomal dominant; Spondylometaphyseal dysplasia, corner fracture type, 184255 (3), Autosomal dominant	Fn1 (MGI:95566)
chr2	215939096	216013622	2q35	2q35	609207	MREG, DSU	Melanoregulin	MREG	55686	ENSG00000118242			Mreg (MGI:2151839)
chr2	216031655	216081842	2q35	2q35	605843	PECR, TERP	Peroxisomal trans-2-enoyl-CoA reductase	PECR	55825	ENSG00000115425			Pecr (MGI:2148199)
chr2	216109296	216206292	2q35	2q35	194364	XRCC5	X-ray repair, complementing defective, repair in Chinese hamster cells-5	XRCC5	7520	ENSG00000079246	included in YAC contig spanning 2q33-q34		Xrcc5 (MGI:104517)
chr2	216257861	216372026	2q35	2q35	608208	MARCH4, RNF174, KIAA1399	Membrane-associated RING-CH finger protein 4	MARCH4	57574	ENSG00000144583			March4 (MGI:2683550)
chr2	216412413	216483052	2q34-q36	2q35	606622	SMARCAL1, HARP, SIOD	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily A-like	SMARCAL1	50485	ENSG00000138375		Schimke immunoosseous dysplasia, 242900 (3), Autosomal recessive	Smarcal1 (MGI:1859183)
chr2	216498796	216501466	2q35	2q35	613314	RPL37A	Ribosomal protein L37A	RPL37A	6168	ENSG00000197756			Rpl37a (MGI:98068)
chr2	216632827	216664435	2q33-q34	2q35	146731	IGFBP2	Insulin-like growth factor-binding protein-2, 36kD	IGFBP2	3485	ENSG00000115457			Igfbp2 (MGI:96437)
chr2	216672104	216695548	2q33-q36	2q35	146734	IGFBP5, IBP5	Insulin-like growth factor-binding protein 5	IGFBP5	3488	ENSG00000115461			Igfbp5 (MGI:96440)
chr2	216859457	216860058	2q35-q36	2q35	190231	TNP1	Transition protein-1	TNP1	7141	ENSG00000118245			
chr2	217799788	218002994	2q35-q36	2q35	600076	TNS1, TNS	Tensin 1	TNS1	7145	ENSG00000079308			Tns1 (MGI:104552)
chr2	218125289	218137252	2q35	2q35	146928	CXCR2, IL8RB, IL8R2	Chemokine, CXC motif, receptor 2	CXCR2	3579	ENSG00000180871			Cxcr2 (MGI:105303)
chr2	218162844	218166992	2q35	2q35	146929	CXCR1, IL8RA	Chemokine, CXC motif, receptor 1	CXCR1	3577	ENSG00000163464		{AIDS, slow progression to}, 609423 (3)	Cxcr1 (MGI:2448715)
chr2	218217093	218254347	2q35	2q35	604224	ARPC2, ARC34	Actin-related protein 2/3 complex, subunit 2	ARPC2	10109	ENSG00000163466			Arpc2 (MGI:1923959)
chr2	218259495	218263860	2q35	2q35	610147	GPBAR1, BG37	G protein-coupled bile acid receptor 1	GPBAR1	151306	ENSG00000179921			Gpbar1 (MGI:2653863)
chr2	218264126	218270208	2q35	2q35	603488	AAMP	Angio-associated migratory cell protein	AAMP	14	ENSG00000127837			Aamp (MGI:107809)
chr2	218270391	218346792	2q35	2q35	609023	MR1, TAHCCP2, KIPP1184, BRP17, PNKD1, FPD1, PDC, DYT8	Myofibrillogenesis regulator 1	PNKD	25953	ENSG00000127838		Paroxysmal nonkinesigenic dyskinesia 1, 118800 (3), Autosomal dominant	Pnkd (MGI:1930773)
chr2	218274191	218292576	2q35	2q35	610364	TMBIM1, RECS1	Transmembrane BAX inhibitor motif-containing protein 1	TMBIM1	64114	ENSG00000135926			Tmbim1 (MGI:1916910)
chr2	218381765	218396893	2q35	2q35	600266	NRAMP1, NRAMP, SLC11A1	Solute carrier family 11 (proton-coupled divalent metal ion transporter), member 1	SLC11A1	6556	ENSG00000018280	within 220 kb of VIL1	{Buruli ulcer, susceptibility to}, 610446 (3); {Mycobacterium tuberculosis, susceptibility to infection by}, 607948 (3)	Slc11a1 (MGI:1345275)
chr2	218398337	218405940	2q34	2q35	605323	CTDSP1, NLIIF, SCP1	C-terminal domain of RNA polymerase II polypeptide A, small phosphatase of, 1	CTDSP1	58190	ENSG00000144579			Ctdsp1 (MGI:2654470)
chr2	218402645	218402721	2q35	2q35	612152	MIR26B, MIRN26B	Micro RNA 26B	MIR26B	407017				
chr2	218419114	218449524	2q35-q36	2q35	193040	VIL1	Villin-1	VIL1	7429	ENSG00000127831		Cholestasis, progressive canalicular (1)	Vil1 (MGI:98930)
chr2	218568577	218596434	2q35	2q35	612054	RQCD1, RCD1, CNOT9	Required for cell differentiation 1, S. pombe, homolog of	CNOT9	9125	ENSG00000144580			Cnot9 (MGI:1928902)
chr2	218637915	218659631	2q34-q35	2q35	604083	ZNF142	Zinc finger protein-142	ZNF142	7701	ENSG00000115568			Zfp142 (MGI:1924514)
chr2	218659655	218663442	2q33	2q35	603647	BCS1L, FLNMS, GRACILE, BJS, PTD, MC3DN1	bcs1, S. cerevisiae, homolog-like	BCS1L	617	ENSG00000074582		Bjornstad syndrome, 262000 (3), Autosomal recessive; GRACILE syndrome, 603358 (3); Leigh syndrome, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial complex III deficiency, nuclear type 1, 124000 (3), Autosomal recessive	Bcs1l (MGI:1914071)
chr2	218663863	218672057	2q35	2q35	616014	RNF25, AO7	Ring finger protein 25	RNF25	64320	ENSG00000163481			Rnf25 (MGI:1890215)
chr2	218672025	218702716	2q35	2q35	607652	STK36, FU, KIAA1278	Serine/threonine protein kinase 36	STK36	27148	ENSG00000163482			Stk36 (MGI:1920831)
chr2	218781732	218815292	2q33-qter	2q35	606530	CYP27A1, CYP27, CTX	Cytochrome P450, subfamily XXVIIA, polypeptide 1 (sterol 27-hydroxylase)	CYP27A1	1593	ENSG00000135929		Cerebrotendinous xanthomatosis, 213700 (3), Autosomal recessive	Cyp27a1 (MGI:88594)
chr2	218819948	218831802	2q35	2q35	604976	PRKAG3	Protein kinase, AMP-activated, noncatalytic, gamma 3	PRKAG3	53632	ENSG00000115592			Prkag3 (MGI:1891343)
chr2	218859822	218874231	2q35	2q35	604663	WNT6	Wingless-type MMTV integration site family, member 6	WNT6	7475	ENSG00000115596			Wnt6 (MGI:98960)
chr2	218874115	218893930	2q35	2q35	606268	WNT10A, SSPS, STHAG4, OODD	Wingless-type MMTV integration site family, member 10A	WNT10A	80326	ENSG00000135925		Odontoonychodermal dysplasia, 257980 (3), Autosomal recessive; Schopf-Schulz-Passarge syndrome, 224750 (3), Autosomal recessive; Tooth agenesis, selective, 4, 150400 (3), Autosomal recessive, Autosomal dominant	Wnt10a (MGI:108071)
chr2	218959627	218962154	2q35	2q35	603764	CDK5R2, NCK5AI	Cyclin-dependent kinase 5, regulatory subunit 2	CDK5R2	8941	ENSG00000171450			Cdk5r2 (MGI:1330828)
chr2	218981086	218985656	2q36	2q35	607150	FEV	Fifth Ewing sarcoma variant	FEV	54738	ENSG00000163497	fused with EWS in tumors		Fev (MGI:2449712)
chr2	218990189	218993404	2q34-q36	2q35	600836	CRYBA2, CTRCT42	Crystallin, beta A2	CRYBA2	1412	ENSG00000163499	mutation identified in 1 CTRCT42 family	?Cataract 42, 115900 (3), Autosomal dominant	Cryba2 (MGI:104336)
chr2	219001644	219001707	2q35	2q35	611173	MIR375, MIRN375	Micro RNA 375	MIR375	494324				
chr2	219002845	219043141	2q35	2q35	614270	CFAP65, CCDC108	Cilia- and flagella-associated protein 65	CFAP65	255101	ENSG00000181378			Cfap65 (MGI:2444274)
chr2	219054419	219060515	2q33-q35	2q35	600726	IHH, BDA1	Indian hedgehog	IHH	3549	ENSG00000163501		Acrocapitofemoral dysplasia, 607778 (3), Autosomal recessive; Brachydactyly, type A1, 112500 (3), Autosomal dominant	Ihh (MGI:96533)
chr2	219075323	219160864	2q35	2q35	611290	NHEJ1, XLF	Nonhomologous end-joining factor 1	NHEJ1	79840	ENSG00000187736		Severe combined immunodeficiency with microcephaly, growth retardation, and sensitivity to ionizing radiation, 611291 (3)	Nhej1 (MGI:1922820)
chr2	219206783	219209650	2q35	2q35	613474	ZFAND2B, AIRAPL	Zinc finger AN1 domain-containing protein 2B	ZFAND2B	130617	ENSG00000158552			Zfand2b (MGI:1916068)
chr2	219209765	219219016	2q36	2q35	605452	ABCB6, MTABC3, MCOPCB7, LAN, DUH3, PSHK2	ATP-binding cassette, subfamily B, member 6	ABCB6	10058	ENSG00000115657		[Blood group, Langereis system], 111600 (3); Dyschromatosis universalis hereditaria 3, 615402 (3), Autosomal dominant; Microphthalmia, isolated, with coloboma 7, 614497 (3), Autosomal dominant; Pseudohyperkalemia, familial, 2, due to red cell leak, 609153 (3), Autosomal dominant	Abcb6 (MGI:1921354)
chr2	219219379	219229687	2q35	2q35	612204	ATG9A, APG9L1	Autophagy 9, S. cerevisiae, homolog of, A	ATG9A	79065	ENSG00000198925			Atg9a (MGI:2138446)
chr2	219229756	219236668	2q35	2q35	617541	ANKZF1, ZNF744	Ankyrin repeat- and zinc finger domain-containing 1	ANKZF1	55139	ENSG00000163516			Ankzf1 (MGI:1098746)
chr2	219249710	219254607	2q35	2q35	191110	TUBA4A, TUBA1, ALS22	Tubulin, alpha-4A	TUBA4A	7277	ENSG00000127824		Amyotrophic lateral sclerosis 22 with or without frontotemporal dementia, 616208 (3), Autosomal dominant	Tuba4a (MGI:1095410)
chr2	219279317	219286899	2q35	2q35	604139	DNAJB2, HSJ1, HSPF3, DSMA5	DnaJ, E. coli, homolog of, subfamily B, member 2 (heat-shock protein, DNAJ-like 1)	DNAJB2	3300	ENSG00000135924		Spinal muscular atrophy, distal, autosomal recessive, 5, 614881 (3), Autosomal recessive	Dnajb2 (MGI:1928739)
chr2	219289622	219309572	2q35-q36.1	2q35	601773	PTPRN, IA2	Protein tyrosine phosphatase, receptor type N (islet cell antigen 2)	PTPRN	5798	ENSG00000054356			Ptprn (MGI:102765)
chr2	219327406	219334534	2q35	2q35	612721	RESP18	Regulated endocrine-specific protein 18	RESP18	389075	ENSG00000182698			Resp18 (MGI:1098222)
chr2	219372028	219400021	2q35	2q35	611367	DNPEP, ASPEP, DAP	Aspartyl aminopeptidase	DNPEP	23549	ENSG00000123992			Dnpep (MGI:1278328)
chr2	219418376	219426738	2q35	2q35	125660	DES, CMD1I, MFM1, SCPNK, ARVD7, ARVC7, LGMD2R	Desmin	DES	1674	ENSG00000175084	1 family with LGMD2R identified with mutation	Cardiomyopathy, dilated, 1I, 604765 (3); ?Muscular dystrophy, limb-girdle, type 2R, 615325 (3), Autosomal recessive; Myopathy, myofibrillar, 1, 601419 (3), Autosomal recessive, Autosomal dominant; Scapuloperoneal syndrome, neurogenic, Kaeser type, 181400 (3), Autosomal dominant	Des (MGI:94885)
chr2	219434214	219493631	2q35	2q35	615950	SPEG, APEG1, CNM5	SPEG complex locus	SPEG	10290	ENSG00000072195		Centronuclear myopathy 5, 615959 (3), Autosomal recessive	Speg (MGI:109282)
chr2	219498864	219506995	2q35	2q35	615495	GMPPA, AAMR	GDP-mannose pyrophosphorylase A	GMPPA	29926	ENSG00000144591		Alacrima, achalasia, and mental retardation syndrome, 615510 (3), Autosomal recessive	Gmppa (MGI:1916330)
chr2	219514169	219538771	2q35-q36	2q35	606715	ACCN4, ASIC4, BNAC4	Cation channel, amiloride-sensitive, neuronal, 4	ASIC4	55515	ENSG00000072182			Asic4 (MGI:2652846)
chr2	219538946	219543764	2q36.1	2q35	610405	CHPF, CSS2	Chondroitin polymerizing factor	CHPF	79586	ENSG00000123989			Chpf (MGI:106576)
chr2	219549407	219571572	2q35	2q35	610991	OBSL1, KIAA0657, 3M2	Obscurin-like 1	OBSL1	23363	ENSG00000124006		3-M syndrome 2, 612921 (3)	
chr2	219572231	219575712	2q33-q36	2q35	147380	INHA	Inhibin, alpha	INHA	3623	ENSG00000123999	proximal to PAX3		Inha (MGI:96569)
chr2	219597850	219616450	2q36	2q35	607172	STK11IP, KIAA1898, LIP1	Serine/threonine kinase 11 interacting protein	STK11IP	114790	ENSG00000144589			Stk11ip (MGI:1918978)
chr2	219627569	219641979	2q36	2q35	106195	SLC2C, AE3	Anion exchanger 3, neuronal	SLC4A3	6508	ENSG00000114923			Slc4a3 (MGI:109350)
chr2	220700000	230100000	2q36		102510	ACRPV	Acropectorovertebral dysplasia (F syndrome)		414058			Acropectorovertebral dysplasia, 102510 (2), Autosomal dominant	
chr2	220700000	230100000	2q36		613944	IGAN2	IgA nephropathy, susceptibility to, 2		100653384		between D2S1323 and D2S362	{IgA nephropathy, susceptibility to, 2}, 613944 (2), ?Autosomal dominant	
chr2	220700000	230100000	2q36.1-q36.3		613238	SPDA3	Spondyloarthropathy, susceptibility to, 3		100379218		max lod at D2S2228	{Spondyloarthropathy, susceptibility to, 3}, 613238 (2)	
chr2	221418026	221574201	2q36.1	2q36.1	602188	EPHA4, HEK8, TYRO1	Ephrin receptor EphA4	EPHA4	2043	ENSG00000116106			Epha4 (MGI:98277)
chr2	222199886	222298995	2q36.1	2q36.1	606597	PAX3, WS1, HUP2, CDHS, WS3	Paired box homeotic gene-3	PAX3	5077	ENSG00000135903		Craniofacial-deafness-hand syndrome, 122880 (3), Autosomal dominant; Rhabdomyosarcoma 2, alveolar, 268220 (3), Autosomal recessive; Waardenburg syndrome, type 1, 193500 (3), Autosomal dominant; Waardenburg syndrome, type 3, 148820 (3), Autosomal recessive, Autosomal dominant	Pax3 (MGI:97487)
chr2	222424051	222562621	2q36.1	2q36.1	612827	SGPP2, SPP2	Sphingosine-1-phosphate phosphatase 2	SGPP2	130367	ENSG00000163082			Sgpp2 (MGI:3589109)
chr2	222571442	222656354	2q36	2q36.1	609690	FARSLB, FRSB	Phenylalanine-tRNA synthetase-like, beta subunit	FARSB	10056	ENSG00000116120			Farsb (MGI:1346035)
chr2	222671737	222709929	2q36.1	2q36.1	610268	MOGAT1, MGAT1, DGAT2L1	Monoacylglycerol O-acyltransferase 1	MOGAT1	116255	ENSG00000124003			Mogat1 (MGI:1915643)
chr2	222860933	222944650	2q34-q35	2q36.1	602371	ACSL3, FACL3, ACS3	Acyl-CoA synthetase long-chain family member 3	ACSL3	2181	ENSG00000123983			Acsl3 (MGI:1921455)
chr2	223051929	223055636	2q35-q36	2q36.1	607775	KCNE4, MIRP3	Potassium channel, voltage-gated, ISK-related subfamily, member 4	KCNE4	23704	ENSG00000152049			Kcne4 (MGI:1891125)
chr2	223596939	223602498	2q35-q36	2q36.1	118930	SCG2, CHGC	Secretogranin II (chromogranin C)	SCG2	7857	ENSG00000171951			Scg2 (MGI:103033)
chr2	223755329	223837601	2q36.1	2q36.1	615781	AP1S3, PSORS15	Adaptor-related protein complex 1, sigma-3 subunit	AP1S3	130340	ENSG00000152056		{Psoriasis 15, pustular, susceptibility to}, 616106 (3), Autosomal dominant	Ap1s3 (MGI:1891304)
chr2	223950845	223967713	2q36	2q36.1	611849	MRPL44, COXPD16	Mitochondrial ribosomal protein L44	MRPL44	65080	ENSG00000135900	Mutation identified in 1 family	?Combined oxidative phosphorylation deficiency 16, 615395 (3), Autosomal recessive	Mrpl44 (MGI:1916413)
chr2	223975047	224039318	2q33-q35	2q36.1	177010	PI7, PN1, SERPINE2	Protease inhibitor 7 (protease nexin I)	SERPINE2	5270	ENSG00000135919	near MYL1; ?COPD susceptibility		Serpine2 (MGI:101780)
chr2	224300000	225200000	2q36.2		613658	RJBS	Rajab syndrome		100528027		between D2S351 and D2S2390	Rajab syndrome, 613658 (2), Autosomal recessive	
chr2	224470149	224585396	2q36	2q36.2	603136	CUL3, PHA2E	Cullin 3	CUL3	8452	ENSG00000036257		Pseudohypoaldosteronism, type IIE, 614496 (3), Autosomal dominant	Cul3 (MGI:1347360)
chr2	224765089	225042688	2q36.2	2q36.2	611518	DOCK10, KIAA0694, ZIZ3	Dedicator of cytokinesis 10	DOCK10	55619	ENSG00000135905			Dock10 (MGI:2146320)
chr2	225399709	225703652	2q36.3	2q36.3	615478	NYPA2, KIAA1486	Neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 2	NYAP2	57624	ENSG00000144460			Nyap2 (MGI:2443135)
chr2	226731316	226798789	2q36	2q36.3	147545	IRS1	Insulin receptor substrate-1	IRS1	3667	ENSG00000169047		{Coronary artery disease, susceptibility to} (3); {Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant	Irs1 (MGI:99454)
chr2	226800158	226999209	2q36.3	2q36.3	617515	RHBDD1, RRP4, RHBDL4	Rhomboid domain-containing 1	RHBDD1	84236	ENSG00000144468			Rhbdd1 (MGI:1924117)
chr2	226970292	227164558	2q36-q37	2q36.3	120131	COL4A4	Collagen IV, alpha-4 polypeptide	COL4A4	1286	ENSG00000081052	head-to-head with COL4A4 in same YAC	Alport syndrome, autosomal recessive, 203780 (3), Autosomal recessive; Hematuria, familial benign (3)	Col4a4 (MGI:104687)
chr2	227164564	227314791	2q36-q37	2q36.3	120070	COL4A3	Collagen IV, alpha-3 polypeptide (Goodpasture antigen)	COL4A3	1285	ENSG00000169031	noncollagenous domain = Goodpasture antigen	Alport syndrome, autosomal dominant, 104200 (3), Autosomal dominant; Alport syndrome, autosomal recessive, 203780 (3), Autosomal recessive; Hematuria, benign familial, 141200 (3), Autosomal dominant	Col4a3 (MGI:104688)
chr2	227325150	227357835	2q36.3	2q36.3	614785	MFF, C2orf33, EMPF2	Mitochondrial fission factor	MFF	56947	ENSG00000168958		Encephalopathy due to defective mitochondrial and peroxisomal fission 2, 617086 (3), Autosomal recessive	
chr2	227362037	227379305	2q36.3	2q36.3	615404	TM4SF20, SLI5	Transmembrane 4 L6 family, member 20	TM4SF20	79853	ENSG00000168955		{Specific language impairment 5}, 615432 (3), Autosomal dominant	Tm4sf20 (MGI:1913511)
chr2	227472168	227561221	2q36	2q36.3	600862	AGFG1, HRB, RIP, RAB	ADP-ribosylation factor GTPase-activating protein with FG repeats 1	AGFG1	3267	ENSG00000173744			Agfg1 (MGI:1333754)
chr2	227685209	227718029	2q36.3	2q36.3	606152	SLC19A3, THMD2, BBGD	Solute carrier family 19 (folate transporter), member 3	SLC19A3	80704	ENSG00000135917		Thiamine metabolism dysfunction syndrome 2 (biotin- or thiamine-responsive encephalopathy type 2), 607483 (3), Autosomal recessive	Slc19a3 (MGI:1931307)
chr2	227813841	227817563	2q33-q37	2q36.3	601960	CCL20, SCYA20, MIP3A, LARC	Chemokine, C-C motif, ligand 20	CCL20	6364	ENSG00000115009			Ccl20 (MGI:1329031)
chr2	227979953	228181998	2q36	2q36.3	611646	SPHKAP, SKIP, KIAA1678	SPHK1 interactor, AKAP domain containing	SPHKAP	80309	ENSG00000153820			Sphkap (MGI:1924879)
chr2	229023972	229271340	2q36.3	2q36.3	612930	PID1, NYGGF4	Phosphotyrosine interaction domain-containing 1	PID1	55022	ENSG00000153823			Pid1 (MGI:2138391)
chr2	229357628	229714569	2q37	2q36.3	607299	DNER	Delta-and notch-like egf-related receptor	DNER	92737	ENSG00000187957			Dner (MGI:2152889)
chr2	229763836	229923233	2q36.3	2q36.3	604506	TRIP12, MRD49	Thyroid hormone receptor interactor 12	TRIP12	9320	ENSG00000153827		Mental retardation, autosomal dominant 49, 617752 (3), Autosomal dominant	Trip12 (MGI:1309481)
chr2	229922490	230013912	2q37.1	2q36.3	609105	FBXO36, FBX36	F-box only protein 36	FBXO36	130888	ENSG00000153832			Fbxo36 (MGI:1289192)
chr2	230100000	242193529	2q37		600430	BDMR, C2DELq37, DEL2q37	Chromosome 2q37 deletion syndrome					Chromosome 2q37 deletion syndrome, 600430 (4), Autosomal dominant	
chr2	230100000	242193529	2q37.1-q37.3		605934	HPE6	Holoprosencephaly 6		117190			Holoprosencephaly 6, 605934 (2)	
chr2	230100000	242193529	2q37		606656	IBGC2	Basal ganglia calcification, idiopathic, 2		100874532			Basal ganglia calcification, idiopathic, 2, 606656 (2)	
chr2	230100000	234700000	2q37.1		609995	MYP12	Myopia 12	MYP12	664780		max lod at D2S2344	Myopia 12, 609995 (2)	
chr2	230100000	234700000	2q37.1		613440	STQTL21	Stature quantitative trait locus 21		100502568		associated with rs6717918	{Stature QTL 21}, 613440 (2)	
chr2	230165472	230225728	2q37.1	2q37.1	604457	SP110, IFI41, IFI75, VODI	SP110 nuclear body protein (interferon-induced protein 41, 30kD; interferon-induced protein 75, 52kD)	SP110	3431	ENSG00000135899		Hepatic venoocclusive disease with immunodeficiency, 235550 (3), Autosomal recessive; {Mycobacterium tuberculosis, susceptibility to}, 607948 (3)	Sp110,Gm15753,Gm16026 (MGI:3783243,MGI:1923364,MGI:3783195)
chr2	230327151	230407505	2q37.1	2q37.1	617747	SP140L	Nuclear body protein SP140-like	SP140L	93349	ENSG00000185404			
chr2	230416155	230545601	2q37.1	2q37.1	604585	SP100	Nuclear antigen SP100	SP100	6672	ENSG00000067066			
chr2	230712841	230821074	2q37.1	2q37.1	612174	CAB39	Calcium-binding protein 39	CAB39	51719	ENSG00000135932			Cab39 (MGI:107438)
chr2	230864597	230879253	2q37	2q37.1	609554	ITM2C, BRI3	Integral membrane protein 2C	ITM2C	81618	ENSG00000135916			Itm2c (MGI:1927594)
chr2	230907317	230961269	2q37	2q37.1	604107	GPR55	G protein-coupled receptor 55	GPR55	9290	ENSG00000135898			Gpr55 (MGI:2685064)
chr2	231056863	231172826	2q37.1	2q37.1	617842	PSMD1	Proteasome 26S subunit, non-ATPase, 1	PSMD1	5707	ENSG00000173692			Psmd1 (MGI:1917497)
chr2	231108229	231126171	2q36.3-q37.1	2q37.1	601122	HTR2B	5-hydroxytryptamine (serotonin) receptor-2B	HTR2B	3357	ENSG00000135914			Htr2b (MGI:109323)
chr2	231198545	231394990	2q37.1	2q37.1	617612	ARMC9, KIAA1868, JBTS30	Armadillo repeat-containing protein 9	ARMC9	80210	ENSG00000135931		Joubert syndrome 30, 617622 (3), Autosomal recessive	Armc9 (MGI:1926045)
chr2	231395623	231401163	2q37.1	2q37.1	615313	B3GNT7	Beta-1,3-N-acetylglucosaminyltransferase 7	B3GNT7	93010	ENSG00000156966			B3gnt7 (MGI:2384394)
chr2	231454747	231464493	2q12-qter	2q37.1	164035	NCL	Nucleolin	NCL	4691	ENSG00000115053			Ncl (MGI:97286)
chr2	231460367	231460441	2q12-qter	2q37.1	611133	SNORD82, RNU82	Small nucleolar RNA, C/D box, 82	SNORD82	25826				
chr2	231519902	231530470	2q37.1	2q37.1	604153	NMUR1, GPR66, FM3	Neuromedin U receptor 1	NMUR1	10316	ENSG00000171596			Nmur1 (MGI:1341898)
chr2	231708524	231713540	2q36-q37	2q37.1	188390	PTMA, TMSA	Prothymosin, alpha (gene sequence 28)	PTMA	5757	ENSG00000187514			
chr2	231732424	231781326	2q36-q37	2q37.1	602676	PDE6D, JBTS22	Phosphodiesterase 6D, cGMP-specific, rod, delta	PDE6D	5147	ENSG00000156973	mutation identified in 1 JBTS22 family	?Joubert syndrome 22, 615665 (3), Autosomal recessive	Pde6d (MGI:1270843)
chr2	231781670	231809252	2q37.1	2q37.1	616010	COPS7B	COP9 signalosome, subunit 7B	COPS7B	64708	ENSG00000144524			Cops7b (MGI:1349388)
chr2	231922093	231926404	2q24-qter	2q37.1	600296	NPPC	Natriuretic peptide precursor C	NPPC	4880	ENSG00000163273			Nppc (MGI:97369)
chr2	231961582	232343967	2q37.2	2q37.1	614184	DIS3L2, PRLMNS	Dis3 mitotic control, S. cerevisiae, homolog-like 2	DIS3L2	129563	ENSG00000144535		Perlman syndrome, 267000 (3), Autosomal recessive	Dis3l2 (MGI:2442555)
chr2	232378533	232382888	2q37	2q37.1	171800	ALPP	Alkaline phosphatase, placental (Regan isozyme)	ALPP	250	ENSG00000163283			Alpi (MGI:1924018)
chr2	232406841	232410713	2q37	2q37.1	171810	ALPPL2	Alkaline phosphatase, placental-like 2	ALPPL2	251	ENSG00000163286			Alppl2 (MGI:108009)
chr2	232456111	232460744	2q37.1	2q37.1	171740	ALPI	Alkaline phosphatase, intestinal	ALPI	248	ENSG00000163295	close to ALPP; proximal to PAX3		Akp3 (MGI:87984)
chr2	232479826	232487858	2q36-q37	2q37.1	605896	ECEL1, XCE, DA5D	Endothelin-converting enzyme-like 1	ECEL1	9427	ENSG00000171551		Arthrogryposis, distal, type 5D, 615065 (3), Autosomal recessive	Ecel1 (MGI:1343461)
chr2	232520462	232525715	2q37.1	2q37.1	613858	PRSS56, MCOP6	Protease, serine, 56	PRSS56	646960	ENSG00000237412		Microphthalmia, isolated 6, 613517 (3), Autosomal recessive	Prss56 (MGI:1916703)
chr2	232526159	232537906	2q33-q34	2q37.1	100720	CHRND, ACHRD, SCCMS, CMS3A, CMS3B, CMS3C	Cholinergic receptor, nicotinic, delta polypeptide	CHRND	1144	ENSG00000135902	mutation identified in 1 CMS3A patient and 1 CMS3C family	Multiple pterygium syndrome, lethal type, 253290 (3), Autosomal recessive; ?Myasthenic syndrome, congenital, 3A, slow-channel, 616321 (3), Autosomal dominant; Myasthenic syndrome, congenital, 3B, fast-channel, 616322 (3), Autosomal recessive; ?Myasthenic syndrome, congenital, 3C, associated with acetylcholine receptor deficiency, 616323 (3), Autosomal recessive	Chrnd (MGI:87893)
chr2	232539726	232546327	2q33-q34	2q37.1	100730	CHRNG, ACHRG	Cholinergic receptor, nicotinic, gamma polypeptide	CHRNG	1146	ENSG00000196811	tightly linked to CHRND by RE	Escobar syndrome, 265000 (3), Autosomal recessive; Multiple pterygium syndrome, lethal type, 253290 (3), Autosomal recessive	Chrng (MGI:87895)
chr2	232547969	232550589	2q37.1	2q37.1	612972	TIGD1	TIGGER transposable element-derived gene 1	TIGD1	200765	ENSG00000221944			
chr2	232550586	232583644	2q37.1	2q37.1	605895	EIF4E2, EIF4EL3, 4EHP	Eukaryotic translation initiation factor 4E family, member 2	EIF4E2	9470	ENSG00000135930			Eif4e2 (MGI:1914440)
chr2	232606056	232682780	2q37.1	2q37.1	611617	EFHD1	EF-hand domain family, member D1	EFHD1	80303	ENSG00000115468			Efhd1 (MGI:1921607)
chr2	232697304	232860576	2q37.1	2q37.1	612003	GIGYF2, KIAA0642, PARK11	GRB10-interacting GYF protein 2	GIGYF2	26058	ENSG00000204120		{Parkinson disease 11}, 607688 (3)	Gigyf2 (MGI:2138584)
chr2	232765801	232776564	2q37	2q37.1	603208	KCNJ13, SVD, LCA16	Potassium inwardly-rectifying channel, subfamily J, member 13	KCNJ13	3769	ENSG00000115474		Leber congenital amaurosis 16, 614186 (3), Autosomal recessive; Snowflake vitreoretinal degeneration, 193230 (3), Autosomal dominant	Kcnj13 (MGI:3781032)
chr2	232878685	233013240	2q37	2q37.1	605991	NGEF	Neuronal guanine nucleotide exchange factor	NGEF	25791	ENSG00000066248			Ngef (MGI:1858414)
chr2	233032671	233035056	2q37	2q37.1	605528	NEU2, SIAL2	Neuraminidase 2	NEU2	4759	ENSG00000115488			Neu2 (MGI:1344417)
chr2	233059966	233207902	2q36-q37	2q37.1	601582	INPP5D, SHIP	Inositol polyphosphate-5-phosphatase, 145kD	INPP5D	3635	ENSG00000168918			Inpp5d (MGI:107357)
chr2	233251570	233295673	2q37.1	2q37.1	610767	ATG16L1, APG16L, IBD10	Autophagy 16-like 1	ATG16L1	55054	ENSG00000085978		{Inflammatory bowel disease (Crohn disease) 10}, 611081 (3)	Atg16l1 (MGI:1924290)
chr2	233275725	233276002	2q37.1	2q37.1	615640	SCARNA5	Small Cajal body-specific RNA 5	SCARNA5	677775		within intron 9 of ATG16L1		
chr2	233288675	233288940	2q37.1	2q37.1	615641	SCARNA6	Small Cajal body-specific RNA 6	SCARNA6	677772		within intron 12 of ATG16L1		
chr2	233307662	233347065	2q37.1	2q37.1	181031	SAG, RP47	S-antigen; retina and pineal gland (arrestin)	SAG	6295	ENSG00000130561		Oguchi disease-1, 258100 (3), Autosomal recessive; Retinitis pigmentosa 47, 613758 (3)	Sag (MGI:98227)
chr2	233354506	233472097	2q37.1	2q37.1	601826	DGKD	Diacylglycerol kinase, delta, 130kD	DGKD	8527	ENSG00000077044			Dgkd (MGI:2138334)
chr2	233475518	233566788	2q37.1	2q37.1	610570	USP40	Ubiquitin-specific protease 40	USP40	55230	ENSG00000085982			Usp40 (MGI:2443184)
chr2	233617644	233773298	2q37	2q37.1	606433	UGT1A8	UDP-glycosyltransferase 1 family, polypeptide A8	UGT1A8	54576	ENSG00000242366			Ugt1a9,Ugt1a10 (MGI:3576092,MGI:3580642)
chr2	233636476	233773304	2q37	2q37.1	606435	UGT1A10	UDP-glycosyltransferase 1 family, polypeptide A10	UGT1A10	54575	ENSG00000242515			Ugt1a9,Ugt1a10 (MGI:3576092,MGI:3580642)
chr2	233671897	233773304	2q37	2q37.1	606434	UGT1A9	UDP-glycosyltransferase 1 family, polypeptide A9	UGT1A9	54600	ENSG00000241119			Ugt1a9,Ugt1a10 (MGI:3576092,MGI:3580642)
chr2	233681937	233773298	2q37	2q37.1	606432	UGT1A7	UDP-glycosyltransferase 1 family, polypeptide A7	UGT1A7	54577	ENSG00000244122			Ugt1a9,Ugt1a10 (MGI:3576092,MGI:3580642)
chr2	233691674	233773304	2q37	2q37.1	606431	UGT1A6	UDP-glycosyltransferase 1 family, polypeptide A6	UGT1A6	54578	ENSG00000167165			Ugt1a6b,Ugt1a6a (MGI:3580629,MGI:2137698)
chr2	233712991	233773298	2q37	2q37.1	606430	UGT1A5	UDP-glycosyltransferase 1 family, polypeptide A5	UGT1A5	54579	ENSG00000240224			
chr2	233718791	233773298	2q37	2q37.1	606429	UGT1A4, UGT1D	UDP-glycosyltransferase 1 family, polypeptide A4	UGT1A4	54657	ENSG00000244474			Ugt1a5 (MGI:3032634)
chr2	233729126	233773298	2q37	2q37.1	606428	UGT1A3, UGT1C	UDP-glycosyltransferase 1 family, polypeptide A3	UGT1A3	54659	ENSG00000243135			Ugt1a2 (MGI:3576049)
chr2	233760272	233773298	2q37	2q37.1	191740	UGT1A1, UGT1, GNT1, BILIQTL1	UDP glycosyltransferase 1 family, polypeptide A1	UGT1A1	54658	ENSG00000241635		[Bilirubin, serum level of, QTL1], 601816 (3); Crigler-Najjar syndrome, type I, 218800 (3), Autosomal recessive; Crigler-Najjar syndrome, type II, 606785 (3), Autosomal recessive; [Gilbert syndrome], 143500 (3), Autosomal recessive; Hyperbilirubinemia, familial transient neonatal, 237900 (3), Autosomal recessive	Ugt1a1 (MGI:98898)
chr2	233836700	233854565	2q37.1	2q37.1	612667	HJURP	Holliday junction recognition protein	HJURP	55355	ENSG00000123485			Hjurp (MGI:2685821)
chr2	233917341	234019521	2q37	2q37.1	606678	TRPM8, TRPP8	Transient receptor potential cation channel, subfamily M, member 8	TRPM8	79054	ENSG00000144481			Trpm8 (MGI:2181435)
chr2	234050666	234077133	2q37-qter	2q37.1	602637	SPP2	Secreted phosphoprotein-2, 24kD	SPP2	6694	ENSG00000072080			Spp2 (MGI:1922646)
chr2	234493040	234497052	2q37.1	2q37.1	604787	ARL4C, ARL7	ADP-ribosylation factor-like 4C	ARL4C	10123	ENSG00000188042			Arl4c (MGI:2445172)
chr2	234951983	235055713	2q37.1-q37.2	2q37.2	605611	SH3BP4, BOG25	SH3 domain-binding protein 4	SH3BP4	23677	ENSG00000130147			Sh3bp4 (MGI:2138297)
chr2	236165235	236168008	2q36-q37	2q37.2	601135	GBX2	Gastrulation brain homeobox 2	GBX2	2637	ENSG00000168505			Gbx2 (MGI:95668)
chr2	236537130	236582357	2q37	2q37.3	610376	ACKR3, CXCR7, CMKOR1, GPR159, RDC1	Atypical chemokine receptor 3	ACKR3	57007	ENSG00000144476			Ackr3 (MGI:109562)
chr2	237085440	237098845	2q37.3	2q37.3	616011	COPS8, CSN8	COP9 signalosome, subunit 8	COPS8	10920	ENSG00000198612			Cops8 (MGI:1915363)
chr2	237324011	237434821	2q37	2q37.3	120250	COL6A3, DYT27, BTHLM1, UCMD1	Collagen VI, alpha-3 polypeptide	COL6A3	1293	ENSG00000163359	close to CRBP1	Bethlem myopathy 1, 158810 (3), Autosomal recessive, Autosomal dominant; Dystonia 27, 616411 (3), Autosomal recessive; Ullrich congenital muscular dystrophy 1, 254090 (3), Autosomal recessive, Autosomal dominant	Col6a3 (MGI:88461)
chr2	237486409	237555317	2q37	2q37.3	606526	MLPH	Melanophilin	MLPH	79083	ENSG00000115648		Griscelli syndrome, type 3, 609227 (3), Autosomal recessive	Mlph (MGI:2176380)
chr2	237566573	237567174	2q37.3	2q37.3	602663	PRLH, PRRP	Prolactin-releasing hormone	PRLH	51052	ENSG00000071677			Prlh (MGI:3644668)
chr2	237574321	237591125	2q37.3	2q37.3	602206	RAB17	Ras-associated protein	RAB17	64284	ENSG00000124839			Rab17 (MGI:104640)
chr2	237627575	237781646	2q37.3	2q37.3	603256	LRRFIP1, GCF2, TRIP, FLAP1	Leucine-rich repeat in FLII-interacting protein 1	LRRFIP1	9208	ENSG00000124831			Lrrfip1 (MGI:1342770)
chr2	237858554	237912116	2q36-q37.1	2q37.3	605153	RAMP1	Receptor activity-modifying protein 1	RAMP1	10267	ENSG00000132329			Ramp1 (MGI:1858418)
chr2	237966944	238042781	2q37.3	2q37.3	617700	UBE2F, NCE2	Ubiquitin-conjugating enzyme E2F	UBE2F	140739	ENSG00000184182			Ube2f (MGI:1915171)
chr2	238060923	238099412	2q37.3	2q37.3	611056	SCLY, SCL	Selenocysteine lyase	SCLY	51540	ENSG00000132330			Scly (MGI:1355310)
chr2	238159007	238168889	2q37.3	2q37.3	615099	ERFE, FAM132B, CTRP15	Erythroferrone	ERFE	151176	ENSG00000178752			Erfe (MGI:3606476)
chr2	238238266	238240123	2q37.3	2q37.3	610331	HES6	Hairy/enhancer of split, Drosophila, homolog of, 6	HES6	55502	ENSG00000144485			Hes6 (MGI:1859852)
chr2	238244037	238290101	2q37.3	2q37.3	603426	PER2, FASPS1, KIAA0347	Period, Drosophila, homolog of, 2	PER2	8864	ENSG00000132326		Advanced sleep phase syndrome, familial, 1, 604348 (3), Autosomal dominant	Per2 (MGI:1195265)
chr2	238320488	238400899	2q37.3	2q37.3	607380	TRAF3IP1, MIPT3, SLSN9	TNF receptor-associated factor 3-interacting protein 1	TRAF3IP1	26146	ENSG00000204104		Senior-Loken syndrome 9, 616629 (3), Autosomal recessive	Traf3ip1 (MGI:1921269)
chr2	238426927	238452249	2q37	2q37.3	605758	ASB1	Ankyrin repeat-containing SOCS box protein 1	ASB1	51665	ENSG00000065802			Asb1 (MGI:1929735)
chr2	238848031	238910547	2q37.3	2q37.3	607556	TWIST2, DERMO1, SETLSS, FFDD3, BBRSAY, AMS	Twist, Drosophila, homolog of, 2 (dermis-expressed protein 1, mouse, homolog of)	TWIST2	117581	ENSG00000233608		Ablepharon-macrostomia syndrome, 200110 (3), Autosomal dominant; Barber-Say syndrome, 209885 (3), Autosomal dominant; Focal facial dermal dysplasia 3, Setleis type, 227260 (3), Autosomal recessive	Twist2 (MGI:104685)
chr2	239048167	239401646	2q37.2	2q37.3	605314	HDAC4, HDACA	Histone deacetylase 4	HDAC4	9759	ENSG00000068024			Hdac4 (MGI:3036234)
chr2	239892449	240025401	2q37.3	2q37.3	603835	NDUFA10	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 10	NDUFA10	4705	ENSG00000130414		Leigh syndrome, 256000 (3), Autosomal recessive, Mitochondrial	Ndufa10 (MGI:1914523)
chr2	240138941	240141372	2q37.3	2q37.3	607877	OTOSP	Otospiralin	OTOS	150677	ENSG00000178602			Otos (MGI:2672814)
chr2	240435697	240468077	2q35-q37	2q37.3	600395	GPC1	Glypican 1	GPC1	2817	ENSG00000063660			Gpc1 (MGI:1194891)
chr2	240456000	240456088	2q37.3	2q37.3	615209	MIR149	Micro RNA 149	MIR149	406941				
chr2	240568525	240578731	2q37.3	2q37.3	605287	RNPEPL1	Arginyl aminopeptidase-like 1 (aminopeptidase B-like)	RNPEPL1	57140	ENSG00000142327			Rnpepl1 (MGI:1914170)
chr2	240586715	240599108	2q37.3	2q37.3	605286	CAPN10, NIDDM1	Calpain-10	CAPN10	11132	ENSG00000142330		{Diabetes mellitus, noninsulin-dependent 1}, 601283 (3)	Capn10 (MGI:1344392)
chr2	240605407	240631258	2q37.3	2q37.3	602646	GPR35	G protein-coupled receptor-35	GPR35	2859	ENSG00000178623			Gpr35 (MGI:1929509)
chr2	240691844	240698482	2q34-q37	2q37.3	609789	AQP12A, AQPX2, AQP12	Aquaporin 12A	AQP12A	375318	ENSG00000184945			Aqp12 (MGI:2664636)
chr2	240713763	240820307	2q37	2q37.3	601255	KIF1A, ATSV, UNC104, SPG30, HSN2C, MRD9	Kinesin family member 1A	KIF1A	547	ENSG00000130294	incorrectly assigned to chr.9	Mental retardation, autosomal dominant 9, 614255 (3), Autosomal dominant; Neuropathy, hereditary sensory, type IIC, 614213 (3), Autosomal recessive; Spastic paraplegia 30, autosomal recessive, 610357 (3), Autosomal recessive	Kif1a (MGI:108391)
chr2	240868744	240879118	2q36-q37	2q37.3	604285	AGXT, SPAT	Alanine-glyoxylate aminotransferase, liver-specific peroxisomal	AGXT	189	ENSG00000172482		Hyperoxaluria, primary, type 1, 259900 (3), Autosomal recessive	Agxt (MGI:1329033)
chr2	240997409	241095567	2q37.3	2q37.3	616634	SNED1, SNEP	SUSHI, NIDOGEN, and EGF-like domains protein 1	SNED1	25992	ENSG00000162804			Sned1 (MGI:3045960)
chr2	241074393	241102331	2q37.3	2q37.3	615393	MTERF4, MTERFD2	Mitochondrial transcription termination factor 4	MTERF4	130916	ENSG00000122085			Mterf4 (MGI:1918355)
chr2	241106098	241150263	2q37.3	2q37.3	607505	PASK, KIAA0135	Pas domain-containing serine-threonine kinase	PASK	23178	ENSG00000115687			Pask (MGI:2155936)
chr2	241149572	241183649	2q37.3	2q37.3	602877	PPP1R7, SDS22	Protein phosphatase 1, regulatory subunit 7	PPP1R7	5510	ENSG00000115685			Ppp1r7 (MGI:1913635)
chr2	241188508	241239601	2q37.3	2q37.3	605096	TMEM16G, PCANAP5, IPCA5, DTMPP, NGEP	Transmembrane protein 16G	ANO7	50636	ENSG00000146205			Ano7 (MGI:3052714)
chr2	241227263	241315841	2q37	2q37.3	142695	HDLBP, VGL	High-density lipoprotein-binding protein	HDLBP	3069	ENSG00000115677			Hdlbp (MGI:99256)
chr2	241315186	241354026	2q37	2q37.3	601506	SEPT2, NEDD5, DIFF6	Septin 2	SEPT2	4735	ENSG00000168385			Sept2 (MGI:97298)
chr2	241356248	241494841	2q37.3	2q37.3	617586	FARP2, FRG, FIR	FERM, ARHGEF, and pleckstrin domain-containing protein 2	FARP2	9855	ENSG00000006607			Farp2 (MGI:2385126)
chr2	241494706	241509729	2q37.3	2q37.3	602255	STK25, SOK1, YSK1	Serine/threonine protein kinase 25	STK25	10494	ENSG00000115694			Stk25 (MGI:1891699)
chr2	241558730	241574137	2q37.3	2q37.3	605404	BOK, BCL2L9	BCL2-related ovarian killer	BOK	666	ENSG00000176720			Bok (MGI:1858494)
chr2	241584404	241637542	2q37.3	2q37.3	612533	THAP4	THAP domain-containing protein 4	THAP4	51078	ENSG00000176946			Thap4 (MGI:1914276)
chr2	241637611	241673856	2q37.3	2q37.3	611338	ATG4B, APG4B, KIAA0943	Autophagy 4, S. cerevisiae, homolog of, B	ATG4B	23192	ENSG00000168397			Atg4b (MGI:1913865)
chr2	241675741	241686967	2q37.3	2q37.3	188345	DTYMK, TYMK, CDC8	Deoxythymidylate kinase	DTYMK	1841	ENSG00000168393			Dtymk (MGI:108396)
chr2	241687011	241729480	2q37.3	2q37.3	608525	ING5	Inhibitor of growth-5	ING5	84289	ENSG00000168395			Ing5 (MGI:1922816)
chr2	241734578	241768815	2q37.3	2q37.3	609186	D2HGDH, D2HGD	D-2-hydroxyglutarate dehydrogenase	D2HGDH	728294	ENSG00000180902		D-2-hydroxyglutaric aciduria, 600721 (3), Autosomal recessive	D2hgdh (MGI:2138209)
chr2	241776824	241804286	2q37.3	2q37.3	608237	GAL3ST2, GP3ST	Galactose-3-O-sulfotransferase 2	GAL3ST2	64090	ENSG00000154252			Gal3st2,Gal3st2c,Gal3st2b (MGI:2685834,MGI:3646771,MGI:3711964)
chr2	241809064	241817412	2q37.3	2q37.3	608527	NEU4	Neuraminidase 4	NEU4	129807	ENSG00000204099			Neu4 (MGI:2661364)
chr2	241849880	241858907	2q37.3	2q37.3	600244	PDCD1, SLEB2	Programmed cell death 1	PDCD1	5133	ENSG00000188389		{Multiple sclerosis, disease progression, modifier of}, 126200 (3), Multifactorial; {Systemic lupus erythematosus, susceptibility to, 2}, 605218 (3)	Pdcd1 (MGI:104879)
chr2	0	242193529	Chr.2		601136	TSE2	Transsuppressor of expression 2		57324				
chr3	0	90900000	3p		607135	CRCL	Creatinine clearance QTL		261727		in African Americans	Creatinine clearance QTL, 607135 (2)	
chr3	0	16300000	3pter-p25		613792	DEL3pterp25, C3DELpterp25	3p- syndrome (chromosome 3pter-p25 deletion syndrome)				contiguous gene deletion syndrome	3p- syndrome, 613792 (4), Autosomal dominant	
chr3	0	8100000	3p26		609299	HPC5	Prostate cancer, hereditary, 5		619402		between D3S1270 and D3S4559	{Prostate cancer, hereditary, 5}, 176807 (2), Autosomal dominant	
chr3	0	8100000	3p26		608448	IBD9	Inflammatory bowel disease 9	IBD9	317669			{Inflammatory bowel disease 9}, 608448 (2)	
chr3	0	26300000	3p26-p24.2		252350	MYMY1, MYMY	Moyamoya disease	MYMY1	50960		max lod at D3S3050	Moyamoya disease, 252350 (2), Autosomal recessive	
chr3	0	8100000	3p26		608982	STQTL5	Stature quantitative trait locus 5		619479		max lod between D3S1297 and D3S1304	{Stature QTL 5}, 608982 (2)	
chr3	196587	409416	3p26.1	3p26.3	607416	CHL1, CALL, L1CAM2	CHL1, mouse, homolog of (L1 cell adhesion molecule 2)	CHL1	10752	ENSG00000134121			Chl1 (MGI:1098266)
chr3	978020	1403609	3p26-p25	3p26.3	607220	CNTN6, NB3	Contactin 6	CNTN6	27255	ENSG00000134115			Cntn6 (MGI:1858223)
chr3	2098802	3059079	3p26-p25	3p26.3-p26.2	607280	CNTN4	Contactin 4	CNTN4	152330	ENSG00000144619			Cntn4 (MGI:1095737)
chr3	3066323	3110413	3p26-p24	3p26.2	147851	IL5RA	Interleukin-5 receptor, alpha	IL5RA	3568	ENSG00000091181			Il5ra (MGI:96558)
chr3	3126915	3153434	3p25.1	3p26.2	612907	TRNT1, SIFD, RPEM	tRNA nucleotidyltransferase, CCA-adding, 1	TRNT1	51095	ENSG00000072756	pseudogenes on chromosomes 1 and 22	Retinitis pigmentosa and erythrocytic microcytosis, 616959 (3), Autosomal recessive; Sideroblastic anemia with B-cell immunodeficiency, periodic fevers, and developmental delay, 616084 (3), Autosomal recessive	Trnt1 (MGI:1917297)
chr3	3148489	3179716	3p26.2	3p26.2	609262	CRBN, MRT2	Cereblon	CRBN	51185	ENSG00000113851	between D3S3525 and D3S1560	Mental retardation, autosomal recessive 2, 607417 (3), Autosomal recessive	Crbn (MGI:1913277)
chr3	4000000	16300000	3p26.1-p25.1		612976	ARHI2	Age-related hearing impairment 2		100302721		associated with rs11928865, rs779701, and rs779706	{Age-related hearing impairment 2}, 612976 (2)	
chr3	4034713	4467281	3p26	3p26.1	607939	SUMF1, FGE	Sulfatase-modifying factor-1	SUMF1	285362	ENSG00000144455		Multiple sulfatase deficiency, 272200 (3), Autosomal recessive	Sumf1 (MGI:1889844)
chr3	4303303	4320648	3p26	3p26.1	609834	SETMAR, METNASE	SET and Mariner transposase domains-containing protein	SETMAR	6419	ENSG00000170364			
chr3	4493347	4847839	3p26.1	3p26.1	147265	ITPR1, SCA15, SCA16, SCA29	Inositol 1,4,5-triphosphate receptor, type 1	ITPR1	3708	ENSG00000150995		Gillespie syndrome, 206700 (3), Autosomal recessive, Autosomal dominant; Spinocerebellar ataxia 15, 606658 (3), Autosomal dominant; Spinocerebellar ataxia 29, congenital nonprogressive, 117360 (3), Autosomal dominant	Itpr1 (MGI:96623)
chr3	4749191	4751589	3p26.2	3p26.1	611662	EGO	Eosinophil granule ontogeny	EGOT	100126791				
chr3	4979411	4985180	3p26	3p26.1	604256	BHLHE40, HLHB2, STRA13, DEC1	Basic helix-loop-helix family, member E40	BHLHE40	8553	ENSG00000134107			Bhlhe40 (MGI:1097714)
chr3	5122244	5180915	3p26.1	3p26.1	616596	ARL8B, GIE1	ADP-ribosylation factor-like 8B	ARL8B	55207	ENSG00000134108			Arl8b (MGI:1914416)
chr3	5187673	5219964	3p26.1	3p26.1	607673	EDEM, KIAA0212	ER degradation-enhancing alpha-mannosidase-like protein	EDEM1	9695	ENSG00000134109			Edem1 (MGI:2180139)
chr3	6861114	7743037	3p26.1	3p26.1	604101	GRM7, MGLUR7	Glutamate receptor, metabotropic, 7	GRM7	2917	ENSG00000196277			Grm7 (MGI:1351344)
chr3	8100000	43600000	3p25-p22		607893	OVCAS1	Ovarian cancer, susceptibility to, 1		574048		between D3S1597 and D3S3611	{Ovarian cancer, susceptibility to}, 607893 (2)	
chr3	8100000	16300000	3p25		602011	ST11, PETS1	Suppression of tumorigenicity 11, pancreas	ST11	8466			?Pancreatic endocrine tumors (1)	
chr3	8501806	8568124	3p26-p24	3p25.3	604859	LMCD1	LIM and cysteine-rich domains 1	LMCD1	29995	ENSG00000071282			Lmcd1 (MGI:1353635)
chr3	8619399	8745034	3p26.1-p25.3	3p25.3	617479	SSUH2, C3orf32, FLS485	Ssu2, C. elegans, homolog of	SSUH2	51066	ENSG00000125046			Ssu2 (MGI:2443733)
chr3	8733799	8746764	3p25	3p25.3	601253	CAV3, LGMD1C, LQT9	Caveolin-3	CAV3	859	ENSG00000182533	within 7-10kb of OXTR	Cardiomyopathy, familial hypertrophic, 192600 (3), Autosomal dominant; Creatine phosphokinase, elevated serum, 123320 (3), Autosomal dominant; Long QT syndrome 9, 611818 (3), Autosomal dominant; Muscular dystrophy, limb-girdle, type IC, 607801 (3), Autosomal recessive, Autosomal dominant; Myopathy, distal, Tateyama type, 614321 (3), Autosomal dominant; Rippling muscle disease, 606072 (3), Autosomal dominant	Cav3 (MGI:107570)
chr3	8750407	8769613	3p26.2	3p25.3	167055	OXTR	Oxytocin receptor	OXTR	5021	ENSG00000180914	3p25 by others; within 7-10kb of CAV3		Oxtr (MGI:109147)
chr3	8877195	8969248	3p25-p24	3p25.3	605256	RAD18	Rad18, S. cerevisiae, homolog of	RAD18	56852	ENSG00000070950			Rad18 (MGI:1890476)
chr3	8980590	9363445	3p25	3p25.3	606525	SRGAP3, KIAA0411, MEGAP	Slit-robo GTPase-activating protein, rho, 3	SRGAP3	9901	ENSG00000196220			Srgap3 (MGI:2152938)
chr3	9397699	9478153	3p25.3	3p25.3	615743	SETD5, KIAA1757	SET domain-containing protein 5	SETD5	55209	ENSG00000168137		Mental retardation, autosomal dominant 23, 615761 (3), Autosomal dominant	Setd5 (MGI:1920145)
chr3	9498360	9553801	3p25	3p25.3	610240	LHFPL4	LHFP-like protein 4	LHFPL4	375323	ENSG00000156959			Lhfpl4 (MGI:3057108)
chr3	9649432	9702393	3p25.3	3p25.3	611089	MTMR14, C3orf29, HJUMPY	Myotubularin-related protein 14	MTMR14	64419	ENSG00000163719		{Centronuclear myopathy, autosomal, modifier of}, 160150 (3), Autosomal dominant	Mtmr14 (MGI:1916075)
chr3	9731728	9748014	3p26-p25	3p25.3	602410	BRPF1, BR140, IDDDFP	Bromodomain- and PHD finger-containing protein 1, 140kD	BRPF1	7862	ENSG00000156983		Intellectual developmental disorder with dysmorphic facies and ptosis, 617333 (3), Autosomal dominant	Brpf1 (MGI:1926033)
chr3	9749943	9788245	3p26.2	3p25.3	601982	OGG1	8-hydroxyguanine DNA glycosylase	OGG1	4968	ENSG00000114026		Renal cell carcinoma, clear cell, somatic, 144700 (3)	Ogg1 (MGI:1097693)
chr3	9757344	9769986	3p25.3	3p25.3	604998	CAMK1, CAMKI	Calcium/calmodulin-dependent protein kinase I	CAMK1	8536	ENSG00000134072			Camk1 (MGI:1098535)
chr3	9779963	9793010	3p25.3	3p25.3	602945	TADA3, TADA3L, ADA3	Transcriptional adaptor 3	TADA3	10474	ENSG00000171148			Tada3 (MGI:1915724)
chr3	9792494	9807104	3p25.3	3p25.3	604226	ARPC4, ARC20	Actin-related protein 2/3 complex, subunit 4	ARPC4	10093	ENSG00000241553			Arpc4 (MGI:1915339)
chr3	9836252	9844058	3p25.3	3p25.3	617759	RPUSD3	RNA pseudouridylate synthase domain-containing protein 3	RPUSD3	285367	ENSG00000156990			Rpusd3 (MGI:2141440)
chr3	9866709	9880253	3p25	3p25.3	612120	CIDEC, FSP27, CIDE3, FPLD5	Cell death-inducing DFFA-like effector C	CIDEC	63924	ENSG00000187288	1 patient identified with mutation	?Lipodystrophy, familial partial, type 5, 615238 (3), Autosomal recessive	Cidec (MGI:95585)
chr3	9890586	9894348	3p25.3	3p25.3	616012	JAGN1, SCN6	Jagunal, Drosophila, homolog of, 1	JAGN1	84522	ENSG00000171135		Neutropenia, severe congenital, 6, autosomal recessive, 616022 (3), Autosomal recessive	Jagn1 (MGI:1915017)
chr3	9902086	9916401	3p25.3	3p25.3	614995	IL17RE	Interleukin 17 receptor E	IL17RE	132014	ENSG00000163701			Il17re (MGI:1889371)
chr3	9917073	9933626	3p25.3-p24.1	3p25.3	610925	IL17RC, IL17RL, CANDF9	Interleukin 17 receptor C	IL17RC	84818	ENSG00000163702		Candidiasis, familial, 9, 616445 (3), Autosomal recessive	Il17rc (MGI:2159336)
chr3	9933787	9945412	3p25.3	3p25.3	607170	CRELD1, AVSD2	Cysteine-rich protein with EGF-like domains 1	CRELD1	78987	ENSG00000163703		Atrioventricular septal defect, partial, with heterotaxy syndrome, 606217 (3), Autosomal dominant; {Atrioventricular septal defect, susceptibility to, 2}, 606217 (3), Autosomal dominant	Creld1 (MGI:2152539)
chr3	10026386	10101936	3p25.3	3p25.3	613984	FANCD2, FANCD, FACD, FAD	Fanconi anemia, complementation group D2	FANCD2	2177	ENSG00000144554		Fanconi anemia, complementation group D2, 227646 (3), Autosomal recessive	Fancd2 (MGI:2448480)
chr3	10115648	10127189	3p25.3	3p25.3	611183	BRK1, C3orf10, HSPC300	BRICK1, SCAR/WAVE actin-nucleating complex subunit	BRK1	55845	ENSG00000254999			Brk1 (MGI:1915406)
chr3	10141634	10153669	3p26-p25	3p25.3	608537	VHL	VHL gene	VHL	7428	ENSG00000134086		Erythrocytosis, familial, 2, 263400 (3), Autosomal recessive; Hemangioblastoma, cerebellar, somatic (3); Pheochromocytoma, 171300 (3), Autosomal dominant; Renal cell carcinoma, somatic, 144700 (3); von Hippel-Lindau syndrome, 193300 (3), Autosomal dominant	Vhl (MGI:103223)
chr3	10164878	10243742	3p25.3	3p25.3	603304	IRAK2	Interleukin 1 receptor-associated kinase 2	IRAK2	3656	ENSG00000134070			Irak2 (MGI:2429603)
chr3	10285749	10292946	3p26-p25	3p25.3	605353	GHRL	Ghrelin	GHRL	51738	ENSG00000157017		{Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Ghrl (MGI:1930008)
chr3	10300928	10321187	3p25-p24	3p25.3	600152	SEC13L1, D3S1231E, SEC13R	SEC13, S. cerevisiae, like 1	SEC13	6396	ENSG00000157020			Sec13 (MGI:99832)
chr3	10324022	10707961	3p26-p25	3p25.3	108733	ATP2B2, PMCA2	ATPase, Ca++ transporting, plasma membrane, 2	ATP2B2	491	ENSG00000157087		{Deafness, autosomal recessive 12, modifier of}, 601386 (3), Autosomal recessive	Atp2b2 (MGI:105368)
chr3	10816199	10940732	3p25.3	3p25.3	607952	SLC6A11, GAT3, GAT4	Solute carrier family 6 (neurotransmitter transporter, GABA), member 11	SLC6A11	6538	ENSG00000132164			Slc6a11 (MGI:95630)
chr3	10992733	11039248	3p25-p24	3p25.3	137165	SLC6A1, GABATR, MAE	Solute carrier family 6 (neurotransmitter transporter, GABA), member 1	SLC6A1	6529	ENSG00000157103		Myoclonic-atonic epilepsy, 616421 (3), Autosomal dominant	Slc6a1 (MGI:95627)
chr3	11137092	11263252	3p21-p14	3p25.3	600167	HRH1	Histamine receptor, subclass H1	HRH1	3269	ENSG00000196639			Hrh1 (MGI:107619)
chr3	11272323	11564651	3p25.3	3p25.3	608760	ATG7, APG7L, GSA7	Autophagy 7, S. cerevisiae, homolog of	ATG7	10533	ENSG00000197548			Atg7 (MGI:1921494)
chr3	11600000	16300000	3p25.2-p25.1		606661	UVM2	Melanoma, uveal, susceptibility to, 2		170593			{Melanoma, uveal, susceptibility to, 2}, 606661 (2)	
chr3	11721895	11846918	3p25.2	3p25.2	614948	TAMM41, RAM41, C3orf31	Translocator assembly and maintenance, mitochondrial, S. cerevisiae, homolog of	TAMM41	132001	ENSG00000144559			Tamm41 (MGI:1916221)
chr3	12004359	12192031	3p25	3p25.2	600755	SYN2	Synapsin II	SYN2	6854	ENSG00000157152		{Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant	Syn2 (MGI:103020)
chr3	12153067	12159350	3p25	3p25.2	601915	TIMP4	Tissue inhibitor of metalloproteinase 4	TIMP4	7079	ENSG00000157150			Timp4 (MGI:109125)
chr3	12287484	12471053	3p25	3p25.2	601487	PPARG, PPARG1, PPARG2, CIMT1, GLM1	Peroxisome proliferator activated receptor, gamma	PPARG	5468	ENSG00000132170	PPARG1, PPARG2 from same gene	Carotid intimal medial thickness 1, 609338 (3); {Diabetes, type 2}, 125853 (3), Autosomal dominant; Insulin resistance, severe, digenic, 604367 (3), Autosomal dominant; Lipodystrophy, familial partial, type 3, 604367 (3), Autosomal dominant; [Obesity, resistance to] (3); Obesity, severe, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Pparg (MGI:97747)
chr3	12484431	12539623	3p25.1	3p25.2	608753	TSEN2, SEN2, PCH2B	tRNA splicing endonuclease 2, S. cerevisiae, homolog of	TSEN2	80746	ENSG00000154743		Pontocerebellar hypoplasia type 2B, 612389 (3), Autosomal recessive	Tsen2 (MGI:2141599)
chr3	12557013	12583712	3p25	3p25.2	608426	MKRN2	Makorin 2	MKRN2	23609	ENSG00000075975			Mkrn2 (MGI:1914277)
chr3	12583600	12664200	3p25	3p25.2	164760	RAF1, CRAF, NS5, CMD1NN	Oncogene RAF1	RAF1	5894	ENSG00000132155		Cardiomyopathy, dilated, 1NN, 615916 (3), Autosomal dominant; LEOPARD syndrome 2, 611554 (3); Noonan syndrome 5, 611553 (3), Autosomal dominant	Raf1 (MGI:97847)
chr3	12796653	12834817	3p25.2	3p25.2	610403	CAND2, TIP120B, KIAA0667	Cullin-associated neddylation -dissociated 2	CAND2	23066	ENSG00000144712			Cand2 (MGI:1914338)
chr3	12897042	13073409	3p25.2	3p25.2	610166	IQSEC1, KIAA0763	IQ motif- and Sec7 domain-containing protein 1	IQSEC1	9922	ENSG00000144711			Iqsec1 (MGI:1196356)
chr3	13200000	32000000	3p25.1-p23		613530	LGMD1H	Muscular dystrophy, limb-girdle, type 1H	LGMD1H	100529230		between D3S1263 and D3S1277	Muscular dystrophy, limb-girdle, type 1H, 613530 (2), Autosomal dominant	
chr3	13316229	13420318	3p25.1	3p25.1	607703	NUP210, GP210, KIAA0906	Nucleoporin, 210kD	NUP210	23225	ENSG00000132182			Nup210 (MGI:1859555)
chr3	13549124	13638421	3p25-p24	3p25.1	135821	FBLN2	Fibulin-2	FBLN2	2199	ENSG00000163520			Fbln2 (MGI:95488)
chr3	13818107	13880120	3p25	3p25.1	601570	WNT7A	Wingless-type MMTV integration site family, member 7A	WNT7A	7476	ENSG00000154764		Fuhrmann syndrome, 228930 (3), Autosomal recessive; Ulna and fibula, absence of, with severe limb deficiency, 276820 (3), Autosomal recessive	Wnt7a (MGI:98961)
chr3	13937306	14065983	3p25.1	3p25.1	611167	TPRXL	Tetrapeptide repeat homeobox-like	TPRXL	348825				
chr3	14112076	14124870	3p25.1	3p25.1	611077	CHDH4, MIA40	Coiled-coil-helix-coiled-coil-helix domain-containing protein 4	CHCHD4	131474	ENSG00000163528			Chchd4 (MGI:1919420)
chr3	14124939	14143679	3p25	3p25.1	612048	TMEM43, ARVD5, ARVC5, EDMD7	Transmembrane protein 43	TMEM43	79188	ENSG00000170876		Arrhythmogenic right ventricular dysplasia 5, 604400 (3), Autosomal dominant; Emery-Dreifuss muscular dystrophy 7, AD, 614302 (3), Autosomal dominant	Tmem43 (MGI:1921372)
chr3	14145144	14178671	3p25	3p25.1	613208	XPC, XPCC	XPC gene	XPC	7508	ENSG00000154767		Xeroderma pigmentosum, group C, 278720 (3), Autosomal recessive	Xpc (MGI:103557)
chr3	14178727	14198368	3p25.1	3p25.1	607283	LSM3	LSM3 protein	LSM3	27258	ENSG00000170860			Lsm3 (MGI:1914928)
chr3	14402575	14489348	3p25-q24	3p25.1	186854	SLC6A6, TAUT	Solute carrier family 6 (neurotransmitter transporter, taurine), member 6	SLC6A6	6533	ENSG00000131389			Slc6a6 (MGI:98488)
chr3	14651745	14672658	3p25.1	3p25.1	616735	CCDC174, HSPC212, IHPM	Coiled-coil domain-containing protein 174	CCDC174	51244	ENSG00000154781		Hypotonia, infantile, with psychomotor retardation, 616816 (3), Autosomal recessive	Ccdc174 (MGI:2444652)
chr3	14818961	14934564	3p25.1	3p25.1	614788	FGD5	FYVE, RhoGEF, and PH domain-containing protein 5	FGD5	152273	ENSG00000154783			Fgd5 (MGI:2443369)
chr3	14947583	15049278	3p25	3p25.1	601426	NR2C2, TR4, TAK1	Nuclear receptor subfamily 2, group C, member 2	NR2C2	7182	ENSG00000177463			Nr2c2 (MGI:1352466)
chr3	15042250	15065336	3p25	3p25.1	611987	MRPS25	Mitochondrial ribosomal protein S25	MRPS25	64432	ENSG00000131368			Mrps25 (MGI:1928140)
chr3	15070068	15099162	3p25.1	3p25.1	609511	RBSN,  ZFYVE20	Rabenosyn 5	RBSN	64145	ENSG00000131381			Rbsn (MGI:1925537)
chr3	15165361	15205958	3p24.3	3p25.1	612397	COL6A4P1, DVWA, DIVA, LOC344875	Collagen, type VI, alpha 4, pseudogene 1	COL6A4P1	344875				
chr3	15206225	15252915	3p24	3p25.1	606400	CAPN7, PALBH	Calpain 7	CAPN7	23473	ENSG00000131375			Capn7 (MGI:1338030)
chr3	15254352	15341393	3p25.1	3p25.1	605612	SH3BP5, SAB	SH3 domain-binding protein 5	SH3BP5	9467	ENSG00000131370	previously mapped to 1q431		Sh3bp5 (MGI:1344391)
chr3	15427556	15442612	3p25.1	3p25.1	608315	EAF1	ELL-associated factor 1	EAF1	85403	ENSG00000144597			Eaf1 (MGI:1921677)
chr3	15450132	15521750	3p25	3p25.1	603033	COLQ, EAD, CMS5	Collagenic tail of endplate acetylcholinesterase	COLQ	8292	ENSG00000206561		Myasthenic syndrome, congenital, 5, 603034 (3), Autosomal recessive	
chr3	15560703	15601851	3p25.1	3p25.1	604300	HACL1, HPCL2	2-hydroxyacyl-CoA lyase 1	HACL1	26061	ENSG00000131373			Hacl1 (MGI:1929657)
chr3	15601351	15653710	3p25	3p25.1	609019	BTD	Biotinidase	BTD	686	ENSG00000169814		Biotinidase deficiency, 253260 (3), Autosomal recessive	Btd (MGI:1347001)
chr3	15667235	15859812	3p25.1	3p25.1	611122	ANKRD28, PITK, KIAA0379	Ankyrin repeat domain-containing protein 28	ANKRD28	23243	ENSG00000206560			Ankrd28 (MGI:2145661)
chr3	16174321	16248223	3p25.1	3p25.1	615131	GALNT15, GALNACT15	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 15	GALNT15	117248	ENSG00000131386			Galnt15 (MGI:1926004)
chr3	16257060	16264988	3p24.3	3p25.1	608959	DPH3, KTI11, ZCSL2, DELGIP1	DPH3, S. cerevisiae, homolog of	DPH3	285381	ENSG00000154813			Dph3 (MGI:1922658)
chr3	16300000	54400000	3p24-p21		609954	ASPG4	Asperger syndrome, susceptibility to, 4		100188800		max lod at D3S2432	{Asperger syndrome susceptibility 4}, 609954 (2)	
chr3	16300000	30800000	3p24		613519	ATOD9	Dermatitis, atopic, 9		105463126		max lod at D3S1768	{Dermatitis, atopic, susceptibility to, 9}, 613519 (2)	
chr3	16300000	43600000	3p24-p22		608088	HSN1B	Hereditary sensory neuropathy, type IB		378888		max lod at D3S2338	Neuropathy, hereditary sensory, type IB, 608088 (2), Autosomal dominant	
chr3	16300000	23800000	3p24.3		612401	OS6	Osteoarthritis susceptibility 6		100286836		associated with rs11718863 and rs7639618	{Osteoarthritis susceptibility 6}, 612401 (2)	
chr3	16300000	52300000	3p24-p21.2		609649	TRICY1	Trichilemmal cyst 1	TRICY1	94014		max lod at D3S1277	Trichilemmal cyst 1, 609649 (2), Autosomal dominant	
chr3	16586791	16605498	3p24	3p24.3	601486	DAZL, DAZH, SPGYLA	Deleted in azoospermia-like	DAZL	1618	ENSG00000092345	?founding member of DAZ gene family	{Spermatogenic failure, susceptibility to} (3)	
chr3	16802690	17090605	3p25-p24	3p24.3	614276	PLCL2, KIAA1092	Phospholipase C-like 2	PLCL2	23228	ENSG00000154822			Plcl2 (MGI:1352756)
chr3	17157161	17742738	3p24.3	3p24.3	615740	TBC1D5, KIAA0210	TBC1 domain family, member 5	TBC1D5	9779	ENSG00000131374			Tbc1d5 (MGI:1919488)
chr3	18345387	18445587	3p23	3p24.3	602075	SATB1	Special AT-rich sequence binding protein-1	SATB1	6304	ENSG00000182568			Satb1 (MGI:105084)
chr3	19947079	19985174	3p24-p22	3p24.3	179512	RAB5A, RAB5	RAS-associated protein RAB5A	RAB5A	5868	ENSG00000144566			Rab5a (MGI:105926)
chr3	20040031	20154403	3p24	3p24.3	602303	CAF	CREBBP-associated factor	KAT2B	8850	ENSG00000114166			Kat2b (MGI:1343094)
chr3	20160592	20188142	3p24.3	3p24.3	609168	SGOL1, SGO, SGO1, CAID	Shugoshin-like 1	SGO1	151648	ENSG00000129810		Chronic atrial and intestinal dysrhythmia, 616201 (3), Autosomal recessive	Sgo1 (MGI:1919665)
chr3	23203006	23590804	3p24.2	3p24.3	602163	UBE2E2	Ubiquitin-conjugating enzyme E2E 2 (homologous to yeast UBC4/5)	UBE2E2	7325	ENSG00000182247			Ube2e2 (MGI:2384997)
chr3	23800000	32000000	3p24.2-p23		611634	FEB9	Febrile seizures, familial, 9		100188849		between D3S3727 and D3S3567	Febrile seizures, familial, 9, 611634 (2), Autosomal dominant	
chr3	23805892	23891639	3p24.3-p24.2	3p24.2	602916	UBE2E1, UBCH6	Ubiquitin-conjugating enzyme E2E 1	UBE2E1	7324	ENSG00000170142			Ube2e1 (MGI:107411)
chr3	23916544	23924630	3p24.2	3p24.2	604174	RPL15, DBA12	Ribosomal protein L15	RPL15	6138	ENSG00000174748	mutation identified in 1 family	?Diamond-Blackfan anemia 12, 615550 (3), Autosomal dominant	Rpl15 (MGI:1913730)
chr3	23945259	23980617	3p24.3	3p24.2	602304	NR1D2, RVR, BD73	Nuclear receptor subfamily 1, group D, member 2	NR1D2	9975	ENSG00000174738			Nr1d2 (MGI:2449205)
chr3	24117152	24495280	3p24.3	3p24.2	190160	THRB, ERBA2, THR1, PRTH	Thyroid hormone receptor, beta (avian erythroblastic leukemia viral (v-erb-a) oncogene homolog-2)	THRB	7068	ENSG00000151090		Thyroid hormone resistance, 188570 (3), Autosomal dominant; Thyroid hormone resistance, autosomal recessive, 274300 (3), Autosomal recessive; Thyroid hormone resistance, selective pituitary, 145650 (3), Autosomal dominant	Thrb (MGI:98743)
chr3	24829322	25597931	3p24	3p24.2	180220	RARB, HAP, MCOPS12	Retinoic acid receptor, beta polypeptide	RARB	5915	ENSG00000077092	= HAP = HBV-activated protein	Microphthalmia, syndromic 12, 615524 (3), Autosomal recessive, Autosomal dominant	Rarb (MGI:97857)
chr3	25597904	25664890	3p24	3p24.2	126431	TOP2B	Topoisomerase (DNA) II, beta, 180kD	TOP2B	7155	ENSG00000077097			Top2b (MGI:98791)
chr3	25718943	25790038	3p24	3p24.2	610661	NGLY1, PNG1, CDDG, CDG1V	N-glycanase 1	NGLY1	55768	ENSG00000151092		Congenital disorder of deglycosylation, 615273 (3), Autosomal recessive	Ngly1 (MGI:1913276)
chr3	25788282	25794533	3p24.2	3p24.2	610324	OXSM, KS	3-oxoacyl-ACP synthase, mitochondrial	OXSM	54995	ENSG00000151093			Oxsm (MGI:1918397)
chr3	27372720	27484419	3p22	3p24.1	603353	SLC4A7, NBC2, NBC3	Solute carrier family 4, sodium bicarbonate cotransporter, member 7	SLC4A7	9497	ENSG00000033867			Slc4a7 (MGI:2443878)
chr3	27715948	27722714	3p21.3-p21.2	3p24.1	604615	EOMES, TBR2	Eomesodermin, Xenopus laevis, homolog of	EOMES	8320	ENSG00000163508	?translocation separating regulatory element from promoter		Eomes (MGI:1201683)
chr3	28241592	28319775	3p24	3p24.1	615166	CMC1, C3orf68	Cytochrome C oxidase assembly mitochondrial protein 1, S. cerevisiae, homolog of	CMC1	152100	ENSG00000187118			Cmc1 (MGI:1915149)
chr3	28322352	28349277	3p24.1	3p24.1	609916	AZI2, AZ2, NAP1, TILP	5-azacytidine-induced gene 2, mouse, homolog of	AZI2	64343	ENSG00000163512			Azi2 (MGI:1351332)
chr3	29280859	30010394	3p24-p23	3p24.1	605786	RBMS3	RNA-binding motif protein, single strand-interacting, 3	RBMS3	27303	ENSG00000144642			Rbms3 (MGI:2444477)
chr3	30606471	30694141	3p24.1	3p24.1	190182	TGFBR2, HNPCC6, AAT3, MFS2, LDS2	Transforming growth factor, beta receptor II, 70-80kD	TGFBR2	7048	ENSG00000163513		Colorectal cancer, hereditary nonpolyposis, type 6, 614331 (3); Esophageal cancer, somatic, 133239 (3); Loeys-Dietz syndrome 2, 610168 (3), Autosomal dominant	Tgfbr2 (MGI:98729)
chr3	30726008	30894660	3p24.1	3p24-p23	615601	GADL1	Glutamate decarboxylase-like 1	GADL1	339896	ENSG00000144644			Gadl1 (MGI:1920998)
chr3	30800000	54400000	3p23-p21		182280	SCLC1	Small-cell cancer of lung		7864		centromeric to ERBA2	Small-cell cancer of lung, 182280 (2), Autosomal dominant	
chr3	31532500	31637621	3p23	3p23	608605	STT3B, SIMP, CDG1X	STT3B, subunit of the oligosaccharyltransferase complex (catalytic)	STT3B	201595	ENSG00000163527	mutation identified in 1 family	?Congenital disorder of glycosylation, type Ix, 615597 (3), Autosomal recessive	Stt3b (MGI:1915542)
chr3	31660824	31981849	3p25.3-p22	3p23	606738	OSBPL10, ORP10	Oxysterol-binding protein-like protein 10	OSBPL10	114884	ENSG00000144645			Osbpl10 (MGI:1921736)
chr3	32000000	43600000	3p22		614836	HHV8S	Human herpesvirus 8, susceptibility to		101056702			{Human herpesvirus 8, susceptibility to}, 614836 (2)	
chr3	32106510	32168714	3p22.3	3p22.3	611778	GPD1L, KIAA0089	Glycerol-3-phosphate dehydrogenase 1-like	GPD1L	23171	ENSG00000152642		Brugada syndrome 2, 611777 (3)	Gpd1l (MGI:1289257)
chr3	32238678	32370324	3p22.3	3p22.3	607891	CMTM8, CKLFSF8	CKLF-like marvel transmembrane domain-containing 8	CMTM8	152189	ENSG00000170293			Cmtm8 (MGI:2447167)
chr3	32391670	32455527	3p22.3	3p22.3	607890	CMTM7, CKLFSF7	CKLF-like marvel transmembrane domain-containing 7	CMTM7	112616	ENSG00000153551			Cmtm7 (MGI:2447166)
chr3	32481311	32502910	3p22.3	3p22.3	607889	CMTM6, CKLFSF6	CKLF-like marvel transmembrane domain-containing 6	CMTM6	54918	ENSG00000091317			Cmtm6 (MGI:2447165)
chr3	32525970	32570923	3p22.3	3p22.3	615890	DYNC1LI1, LIC1	Dynein, cytoplasmic 1, light intermediate chain 1	DYNC1LI1	51143	ENSG00000144635			Dync1li1 (MGI:2135610)
chr3	32951554	32955311	3p24	3p22.3	604836	CCR4, CKR4, CMKBR4	Chemokine (C-C) receptor-4	CCR4	1233	ENSG00000183813			Ccr4 (MGI:107824)
chr3	32996607	33097229	3p21.33	3p22.3	611458	GLB1, MPS4B	Galactosidase, beta-1	GLB1	2720	ENSG00000170266	3p14.2-p11 excluded	GM1-gangliosidosis, type I, 230500 (3), Autosomal recessive; GM1-gangliosidosis, type II, 230600 (3), Autosomal recessive; GM1-gangliosidosis, type III, 230650 (3), Autosomal recessive; Mucopolysaccharidosis type IVB (Morquio), 253010 (3), Autosomal recessive	Glb1 (MGI:88151)
chr3	33113957	33147772	3p22	3p22.3	605497	CRTAP, CASP, OI7	Cartilage-associated protein	CRTAP	10491	ENSG00000170275		Osteogenesis imperfecta, type VII, 610682 (3), Autosomal recessive	Crtap (MGI:1891221)
chr3	33277024	33422697	3p22.3	3p22.3	605652	FBXL2, FBL2	F-box and leucine-rich repeat protein 2	FBXL2	25827	ENSG00000153558			Fbxl2 (MGI:1919429)
chr3	33388335	33440404	3p23	3p22.3	609784	UBP1, LBP1A, LBP1B	Upstream binding protein 1	UBP1	7342	ENSG00000153560			Ubp1 (MGI:104889)
chr3	33496244	33718355	3p22.3	3p22.3	605853	CLASP2	CLIP-associated protein 2	CLASP2	23122	ENSG00000163539			Clasp2 (MGI:1923749)
chr3	33798570	33869706	3p22.3	3p22.3	608074	PDCD6IP, AIP1, ALIX, KIAA1375	Programmed cell death 6-interacting protein	PDCD6IP	10015	ENSG00000170248			Pdcd6ip (MGI:1333753)
chr3	35744475	35744558	3p22	3p22.3	611769	MIR128-2, MIR128B, MIRN128-2	Micro RNA 128-2	MIR128-2	406916				
chr3	36380342	36548006	3p24-p22	3p22.3-p22.2	602317	STAC	SRC homology three (SH3) and cysteine-rich domain	STAC	6769	ENSG00000144681			Stac (MGI:1201400)
chr3	36400000	39300000	3p22.2		615612	DDH2	Developmental dysplasia of the hip 2		102775567		between rs4481097 and rs4626072	Developmental dysplasia of the hip 2, 615612 (2), Autosomal dominant	
chr3	36712421	36764205	3p22.3	3p22.2	613167	DCLK3, DCK3, CLR	Doublecortin-like kinase 3	DCLK3	85443	ENSG00000163673			Dclk3 (MGI:3039580)
chr3	36985865	36993303	3p22.1	3p22.2	607911	EPM2AIP1, KIAA0766	EPM2A-interacting protein 1	EPM2AIP1	9852	ENSG00000178567			Epm2aip1 (MGI:1925031)
chr3	36993349	37050845	3p21.3	3p22.2	120436	MLH1, COCA2, HNPCC2	mutL, E. coli, homolog of, 1	MLH1	4292	ENSG00000076242		Colorectal cancer, hereditary nonpolyposis, type 2, 609310 (3); Mismatch repair cancer syndrome, 276300 (3), Autosomal recessive; Muir-Torre syndrome, 158320 (3), Autosomal dominant	Mlh1 (MGI:101938)
chr3	37052625	37176816	3p22.2	3p22.2	614043	LRRFIP2	Leucine-rich repeat in FLII-interacting protein 2	LRRFIP2	9209	ENSG00000093167			
chr3	37243190	37366878	3p22-p21.3	3p22.2	602509	GOLGA4	Golgi autoantigen, golgin subfamily a, 4	GOLGA4	2803	ENSG00000144674			Golga4 (MGI:1859646)
chr3	37452321	37819789	3p21.3	3p22.2	603963	ITGA9	Integrin, alpha-9	ITGA9	3680	ENSG00000144668			Itga9 (MGI:104756)
chr3	37969403	37969479	3p22.2	3p22.2	612151	MIR26A, MIRN26A1	Micro RNA 26A1	MIR26A1	407015				
chr3	38007495	38029662	3p22-p21.3	3p22.2	602142	PLCD1, NDNC3	Phospholipase C, delta-1	PLCD1	5333	ENSG00000187091		Nail disorder, nonsyndromic congenital, 3, (leukonychia), 151600 (3), Autosomal recessive, Autosomal dominant	Plcd1 (MGI:97614)
chr3	38038594	38122740	3p22-p21.3	3p22.2	604050	DLEC1, DLC1	Deleted in lung and esophageal cancer 1	DLEC1	9940	ENSG00000008226		Esophageal cancer, 133239 (1), Autosomal dominant; Lung cancer, 211980 (1), Autosomal recessive	Dlec1 (MGI:2443671)
chr3	38122709	38137241	3p23-p22	3p22.2	604054	ACAA1	Acetyl-Coenzyme A acyltransferase 1 (peroxisomal 3-oxoacyl-Coenzyme A thiolase)	ACAA1	30	ENSG00000060971			Acaa1a (MGI:2148491)
chr3	38137438	38143021	3p22-p21.3	3p22.2	602170	MYD88, MYD88D	Myeloid differentiation primary response gene 88	MYD88	4615	ENSG00000172936		Macroglobulinemia, Waldenstrom, somatic, 153600 (3); Pyogenic bacterial infections, recurrent, due to MYD88 deficiency, 612260 (3)	Myd88 (MGI:108005)
chr3	38165050	38255487	3p22-p21.3	3p22.2	604046	OSR1	Oxidative stress-responsive 1	OXSR1	9943	ENSG00000172939			Oxsr1 (MGI:1917378)
chr3	38346759	38453040	3p22-p21.3	3p22.2	604049	XYLB	Xylulokinase, H. influenzae, homolog of	XYLB	9942	ENSG00000093217			Xylb (MGI:2142985)
chr3	38454298	38493141	3p22-p21.3	3p22.2	602730	ACVR2B, ACTRIIB, HTX4	Activin A receptor, type IIB	ACVR2B	93	ENSG00000114739		Heterotaxy, visceral, 4, autosomal, 613751 (3)	Acvr2b (MGI:87912)
chr3	38496126	38526304	3p22-p21.3	3p22.2	604051	EXOG, ENDOGL1, ENGL	Endo/exonuclease, ENDOG-like	EXOG	9941	ENSG00000157036			Exog (MGI:2143333)
chr3	38548060	38649672	3p21	3p22.2	600163	SCN5A, LQT3, VF1, HB1, SSS1, CMD1E, CDCD2	Sodium channel, voltage-gated, type V, alpha polypeptide	SCN5A	6331	ENSG00000183873		Atrial fibrillation, familial, 10, 614022 (3), Autosomal dominant; Brugada syndrome 1, 601144 (3), Autosomal dominant; Cardiomyopathy, dilated, 1E, 601154 (3), Autosomal dominant; Heart block, nonprogressive, 113900 (3), Autosomal dominant; Heart block, progressive, type IA, 113900 (3), Autosomal dominant; Long QT syndrome-3, 603830 (3), Autosomal dominant; Sick sinus syndrome 1, 608567 (3), Autosomal recessive; {Sudden infant death syndrome, susceptibility to}, 272120 (3), Autosomal recessive; Ventricular fibrillation, familial, 1, 603829 (3)	Scn5a (MGI:98251)
chr3	38697109	38794009	3p22.2	3p22.2	604427	SCN10A, FEPS2	Sodium channel, voltage-gated, type X, alpha subunit	SCN10A	6336	ENSG00000185313		Episodic pain syndrome, familial, 2, 615551 (3), Autosomal dominant	Scn10a (MGI:108029)
chr3	38845763	39051944	3p22.2	3p22.2	604385	SCN11A, HSAN7, FEPS3	Sodium channel, voltage-gated, type XI, alpha subunit	SCN11A	11280	ENSG00000168356		Episodic pain syndrome, familial, 3, 615552 (3), Autosomal dominant; Neuropathy, hereditary sensory and autonomic, type VII, 615548 (3), Autosomal dominant	Scn11a (MGI:1345149)
chr3	39051985	39096670	3p21.33	3p22.2	612167	WDR48, KIAA1449	WD repeat-containing protein 48	WDR48	57599	ENSG00000114742			Wdr48 (MGI:1914811)
chr3	39096598	39108362	3p21.3	3p22.2	606867	GORASP1, GOLPH5, GRASP65, P65	Golgi reassembly stacking protein 1, 65kD	GORASP1	64689	ENSG00000114745			Gorasp1 (MGI:1921748)
chr3	39141850	39154601	3p22	3p22.2	606458	AXUD1	Axin1 upregulated	CSRNP1	64651	ENSG00000144655			Csrnp1 (MGI:2387989)
chr3	39183209	39192620	3p22.2	3p22.2	609777	CMYA1, XIN	Cardiomyopathy-associated protein 1	XIRP1	165904	ENSG00000168334			Xirp1 (MGI:1333878)
chr3	39263493	39281734	3pter-p21	3p22.2	601470	CX3CR1, GPR13, V28	Chemokine (C-X3-C) receptor 1 (G protein-coupled receptor-13)	CX3CR1	1524	ENSG00000168329		{Coronary artery disease, resistance to}, 607339 (3); {Macular degeneration, age-related, 12}, 613784 (3); {Rapid progression to AIDS from HIV1 infection}, 609423 (3)	Cx3cr1 (MGI:1333815)
chr3	39329705	39333679	3p22	3p22.1	601834	CCR8, CMKBR8, CMKBRL2, CKRL1	Chemokine (C-C) receptor 8	CCR8	1237	ENSG00000179934			Ccr8 (MGI:1201402)
chr3	39383323	39397350	3p22.1	3p22.1	610819	SLC25A38, SIDBA2	Solute carrier family 25, member 38	SLC25A38	54977	ENSG00000144659		Anemia, sideroblastic, 2, pyridoxine-refractory, 205950 (3), Autosomal recessive	Slc25a38 (MGI:2384782)
chr3	39406688	39412541	3p21.3	3p22.1	150370	RPSA, LAMR1, LAMBR, ICAS	Ribosomal protein SA	RPSA	3921	ENSG00000168028		Asplenia, isolated congenital, 271400 (3), Autosomal dominant	Rpsa (MGI:105381)
chr3	39411053	39411206	3p22.1	3p22.1	180646	SNORA62, RNU108, RNE2	Small nucleolar RNA, H/ACA box, 62	SNORA62	6044				
chr3	39467572	39529496	3p22-p21	3p22.1	600948	MOBP	Myelin-associated oligodendrocyte basic protein	MOBP	4336	ENSG00000168314			Mobp (MGI:108511)
chr3	39808913	40260320	3p21.33-p21.32	3p22.1	611790	MYRIP, SLAC2C	Myosin VIIA- and RAB-interacting protein	MYRIP	25924	ENSG00000170011			Myrip (MGI:2384407)
chr3	40387155	40428625	3p21.3	3p22.1	603161	ENTPD3, CD39L3	Ectonucleoside triphosphate diphosphohydrolase 3	ENTPD3	956	ENSG00000168032			Entpd3 (MGI:1321386)
chr3	40457291	40462371	3p22.1	3p22.1	617414	RPL14	Ribosomal protein L14	RPL14	9045	ENSG00000188846			Rpl14 (MGI:1914365)
chr3	41199421	41240452	3p22.1	3p22.1	116806	CTNNB1, MRD19, EVR7	Catenin (cadherin-associated protein), beta 1, 88kD	CTNNB1	1499	ENSG00000168036		Colorectal cancer, somatic, 114500 (3); Exudative vitreoretinopathy 7, 617572 (3), Autosomal dominant; Hepatocellular carcinoma, somatic, 114550 (3); Medulloblastoma, somatic, 155255 (3); Mental retardation, autosomal dominant 19, 615075 (3), Autosomal dominant; Ovarian cancer, somatic, 167000 (3); Pilomatricoma, somatic, 132600 (3)	Ctnnb1 (MGI:88276)
chr3	41246598	41962439	3p22.1	3p22.1	617010	ULK4, FAM7C1	Unc51-like kinase 4	ULK4	54986	ENSG00000168038			Ulk4 (MGI:1921622)
chr3	42013801	42225889	3p25.3-p24.1	3p22.1	608112	TRAK1, OIP106, KIAA1042	Trafficking protein, kinesin-binding 1	TRAK1	22906	ENSG00000182606			Trak1 (MGI:1914345)
chr3	42257823	42266194	3pter-p21	3p22.1	118440	CCK	Cholecystokinin	CCK	885	ENSG00000187094			Cck (MGI:88297)
chr3	42360765	42411793	3p21.33	3p22.1	612750	LYZL4	Lysozyme-like 4	LYZL4	131375	ENSG00000157093			Lyzl4 (MGI:1916282)
chr3	42489298	42537572	3p22	3p22.1	192321	VIPR1	Vasoactive intestinal peptide receptor 1	VIPR1	7433	ENSG00000114812	incorrectly assigned to 2q37		Vipr1 (MGI:109272)
chr3	42547966	42603126	3p22.1	3p22.1	604028	SEC22C	Secretion deficient 22, S. cerevisiae, homolog of, C	SEC22C	9117	ENSG00000093183			Sec22c (MGI:2447871)
chr3	42581839	42594997	3p21	3p22.1	606473	SS18L2	SS18-like gene 2	SS18L2	51188	ENSG00000008324			Ss18l2 (MGI:1349474)
chr3	42600006	42648740	3p22.1	3p22.1	161565	NKTR	Natural tumor-killer recognition sequence	NKTR	4820	ENSG00000114857	mouse gene close to Cck		Nktr (MGI:97346)
chr3	42685518	42692445	3p22.1	3p22.1	615340	KLHL40, SYRP, KBTBD5, NEM8	Kelch-like 40	KLHL40	131377	ENSG00000157119		Nemaline myopathy 8, autosomal recessive, 615348 (3)	Klhl40 (MGI:1919580)
chr3	42692662	42702848	3p22.1	3p22.1	608116	HHATL, MBOAT3, C3orf3, KIAA1173	Hedgehog acyltransferase-like protein	HHATL	57467	ENSG00000010282			Hhatl (MGI:1922020)
chr3	42809471	42867282	3p21.3	3p22.1	602648	ACKR2, CCBP2, CMKBR9, D6, CCR9, CCR10	Atypical chemokine receptor 2	ACKR2	1238	ENSG00000144648			Ackr2 (MGI:1891697)
chr3	42872191	42876140	3p22-p21.3	3p22.1	602172	CYP8B1, CYP12	Cytochrome P450, subfamily VIIIB, polypeptide 1	CYP8B1	1582	ENSG00000180432			Cyp8b1 (MGI:1338044)
chr3	43079228	43106084	3p22.1	3p22.1	614828	POMGNT2, GTDC2, C3orf39, AGO61, MDDGA8	Protein O-mannose beta-1,2-N-acetylglucosaminyltransferase 2	POMGNT2	84892	ENSG00000144647		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies, type A, 8, 614830 (3), Autosomal recessive	Pomgnt2 (MGI:2143424)
chr3	43286511	43351142	3p21	3p22.1	612760	SNRK, KIAA0096	SNF-related kinase	SNRK	54861	ENSG00000163788			Snrk (MGI:108104)
chr3	43366325	43691593	3p22.1	3p22.1-p21.3	613726	ANO10, TMEM16K, SCAR10	Anoctamin 10	ANO10	55129	ENSG00000160746		Spinocerebellar ataxia, autosomal recessive 10, 613728 (3), Autosomal recessive	Ano10 (MGI:2143103)
chr3	43600000	54400000	3p21		612007	CELIAC9	Celiac disease, susceptibility to, 9		100188871		associated with rs6441961	{Celiac disease, susceptibility to, 9}, 612007 (2)	
chr3	43600000	54400000	3p21		606874	HSCR6	Hirschsprung disease, susceptibility to, 6		246321			{Hirschsprung disease, susceptibility to, 6}, 606874 (2)	
chr3	43600000	50600000	3p21.3		612241	IBD12	Inflammatory bowel disease 12		100188952			{Inflammatory bowel disease 12}, 612241 (2)	
chr3	43600000	74100000	3p21-p13		612574	MPVQTL2	Mean platelet volume quantitative trait locus 2		100271868		associated with rs12485738	[Mean platelet volume QTL2], 612574 (2)	
chr3	43600000	54400000	3p21		613806	PSC	Cholangitis, primary sclerosing		100653366			Cholangitis, primary sclerosing, 613806 (2)	
chr3	43600000	50600000	3p21.3		601994	TRR	Transfer RNA arginine		7870				
chr3	43690869	43734370	3p21	3p21.33	604780	ABHD5, CGI58, IECN2, NCIE2	Abhydrolase domain containing 5	ABHD5	51099	ENSG00000011198		Chanarin-Dorfman syndrome, 275630 (3), Autosomal recessive	Abhd5 (MGI:1914719)
chr3	44114211	44114309	3p21.32	3p21.32	613394	MIR138-1, MIRN138-1	Micro RNA 138-1	MIR138-1	406929				
chr3	44200000	50600000	3p21.31		609815	ZD1	Zygodactyly 1		780914		max lod at D3S2409	Zygodactyly 1, 609815 (2)	
chr3	44241885	44337070	3p21.33	3p21.31	614412	TOPAZ1, C3orf77	Testis- and ovary-specific PAZ domain protein 1	TOPAZ1	375337	ENSG00000173769			Topaz1 (MGI:3779933)
chr3	44648740	44660790	3p22-p21	3p21.31	194533	ZNF35, HF10	Zinc finger protein-35 (HF.10)	ZNF35	7584	ENSG00000169981			Zfp105 (MGI:1277119)
chr3	44761716	44853273	3p21.31	3p21.31	617569	KIF15, KLP2, KNSL7	Kinesin family, member 15	KIF15	56992	ENSG00000163808			Kif15 (MGI:1098258)
chr3	44874605	44914600	3p22-p21.33	3p21.31	600585	TGM4	Transglutaminase-4, prostate	TGM4	7047	ENSG00000163810			Tgm4 (MGI:3027002)
chr3	44915260	44976184	3p21.31	3p21.31	617150	ZDHHC3, DHHC3, GODZ	Zinc finger DHHC domain-containing protein 3	ZDHHC3	51304	ENSG00000163812			Zdhhc3 (MGI:1926134)
chr3	44975290	45012667	3p21.31	3p21.31	606488	EXOSC7, RRP42	Exosome component 7	EXOSC7	23016	ENSG00000075914			Exosc7 (MGI:1913696)
chr3	45026206	45036072	3p22-p21.3	3p21.31	187520	TNA	Tetranectin (plasminogen-binding protein)	CLEC3B	7123	ENSG00000163815			Clec3b (MGI:104540)
chr3	45082273	45146421	3p23-p21	3p21.31	611735	CDCP1, SIMA135	CUB domain-containing protein 1	CDCP1	64866	ENSG00000163814			Cdcp1 (MGI:2442010)
chr3	45388563	45548841	3p21.3	3p21.31	604544	LARS2, PRLTS4, HLASA	Leucyl-tRNA synthetase, mitochondrial	LARS2	23395	ENSG00000011376	mutation identified in 1 HLASA patient	?Hydrops, lactic acidosis, and sideroblastic anemia, 617021 (3), Autosomal recessive; Perrault syndrome 4, 615300 (3), Autosomal recessive	Lars2 (MGI:2142973)
chr3	45594104	45681262	3p21.3	3p21.31	604543	LIMD1	LIM domain-containing protein 1	LIMD1	8994	ENSG00000144791			Limd1 (MGI:1352502)
chr3	45689240	45745424	3p21.3	3p21.31	606569	SACM1L, SAC1, KIAA0851	SAC1 suppressor of actin mutations 1-like	SACM1L	22908	ENSG00000211456			Sacm1l (MGI:1933169)
chr3	45755448	45796552	3p21.3	3p21.31	605616	SLC6A20, XT3	X transporter protein 3	SLC6A20	54716	ENSG00000163817		Hyperglycinuria, 138500 (3), Autosomal dominant; Iminoglycinuria, digenic, 242600 (3), Autosomal recessive, Digenic recessive	Slc6a20a (MGI:2143217)
chr3	45823315	45916036	3p21.3	3p21.31	606568	LZTFL1, BBS17	Leucine zipper transcription factor-like 1	LZTFL1	54585	ENSG00000163818		Bardet-Biedl syndrome 17, 615994 (3), Autosomal recessive	Lztfl1 (MGI:1934860)
chr3	45886503	45903176	3p21.3	3p21.31	604738	CCR9	Chemokine, CC motif, receptor 9	CCR9	10803	ENSG00000173585			Ccr9 (MGI:1341902)
chr3	45917898	45995823	3p21.3	3p21.31	607182	FYCO1, CATC2, CTRCT18	FYVE and coiled-coil domain containing 1	FYCO1	79443	ENSG00000163820		Cataract 18, autosomal recessive, 610019 (3), Autosomal recessive	Fyco1 (MGI:107277)
chr3	45940687	45948353	3p21	3p21.31	605163	CXCR6, STRL33, BONZO	Chemokine, CXC motif, receptor 6	CXCR6	10663	ENSG00000172215			Cxcr6 (MGI:1934582)
chr3	46016989	46086802	3p21.3-p21.1	3p21.31	600552	XCR1, CCXCR1, GPR5	Chemokine, C motif, receptor 1 (G protein-coupled receptor-5)	XCR1	2829	ENSG00000173578			Xcr1 (MGI:1346338)
chr3	46201708	46208340	3p21	3p21.31	601159	CCR1, CMKBR1, CKR1, HM145	Chemokine (C-C) receptor 1	CCR1	1230	ENSG00000163823			Ccr1 (MGI:104618)
chr3	46210698	46266705	3p21.3	3p21.31	601268	CCR3, CKR3, CMKBR3	Chemokine (C-C) receptor 3	CCR3	1232	ENSG00000183625			Ccr3 (MGI:104616)
chr3	46353743	46360939	3p21	3p21.31	601267	CCR2, CMKBR2	Chemokine (C-C) receptor 2	CCR2	729230	ENSG00000121807		{HIV infection, susceptibility/resistance to} (3)	Ccr2 (MGI:106185)
chr3	46370141	46376205	3p21	3p21.31	601373	CCR5, CMKBR5, CCCKR5, IDDM22	Chemokine (C-C) receptor 5	CCR5	1234	ENSG00000160791		{Diabetes mellitus, insulin-dependent, 22}, 612522 (3); {HIV infection, susceptibility/resistance to} (3); {Hepatitis C virus, resistance to}, 609532 (3); {West nile virus, susceptibility to}, 610379 (3)	Ccr5 (MGI:107182)
chr3	46407165	46409522	3p21	3p21.31	608379	CCRL2	Chemokine, CC motif, receptor-like protein 2	CCRL2	9034	ENSG00000121797			Ccrl2 (MGI:1920904)
chr3	46436004	46485233	3p21.31	3p21.31	150210	LTF	Lactotransferrin	LTF	4057	ENSG00000012223			Ltf (MGI:96837)
chr3	46497994	46500948	3p21.3	3p21.31	607181	RTP3, TMEM7	Receptor-transporting protein 3	RTP3	83597	ENSG00000163825			
chr3	46515384	46580098	3p21.3	3p21.31	607180	LRRC2	Leucine-rich repeat-containing 2	LRRC2	79442	ENSG00000163827			Lrrc2 (MGI:1921499)
chr3	46574554	46582462	3p23-p21	3p21.31	187395	TDGF1	Teratocarcinoma-derived growth factor-1	TDGF1	6997	ENSG00000241186		Forebrain defects (3)	Tdgf1 (MGI:98658)
chr3	46668994	46693712	3p21.31	3p21.31	612402	ALS2CL	ALS2 C-terminal-like protein	ALS2CL	259173	ENSG00000178038			Als2cl (MGI:2447532)
chr3	46693777	46710922	3p21	3p21.31	607237	TMIE, DFNB6	Transmembrane inner ear-expressed gene	TMIE	259236	ENSG00000181585		Deafness, autosomal recessive 6, 600971 (3), Autosomal recessive	Tmie (MGI:2159400)
chr3	46712115	46717882	3p21.31	3p21.31	607950	PRSS50	Protease, serine, 50	PRSS50	29122	ENSG00000283706			Prss50 (MGI:2447303)
chr3	46857866	46863482	3p	3p21.31	160790	MYL3, CMH8	Myosin, light polypeptide-3, alkali; ventricular, skeletal, slow	MYL3	4634	ENSG00000160808		Cardiomyopathy, hypertrophic, 8, 608751 (3), Autosomal dominant	Myl3 (MGI:97268)
chr3	46877688	46903798	3p22-p21.1	3p21.31	168468	PTHR1, PTHR, PFE	Parathyroid hormone receptor-1	PTH1R	5745	ENSG00000160801		Chondrodysplasia, Blomstrand type, 215045 (3), Autosomal recessive; Eiken syndrome, 600002 (3), Autosomal recessive; Failure of tooth eruption, primary, 125350 (3), Autosomal dominant; Metaphyseal chondrodysplasia, Murk Jansen type, 156400 (3), Autosomal dominant	Pth1r (MGI:97801)
chr3	46979682	47009703	3p22.1-p21.1	3p21.31	614169	NBEAL2, KIAA0540, GPS, BDPLT4	Neurobeachin-like 2	NBEAL2	23218	ENSG00000160796		Gray platelet syndrome, 139090 (3), Autosomal recessive	Nbeal2 (MGI:2448554)
chr3	47016407	47164036	3p21.3-p21.2	3p21.31	612778	SETD2, SET2, HYPB, HBP231, KIAA1732, LLS	SET domain-containing protein 2	SETD2	29072	ENSG00000181555		Luscan-Lumish syndrome, 616831 (3), Autosomal dominant	Setd2 (MGI:1918177)
chr3	47228025	47282846	3p21.31	3p21.31	607910	KIF9	Kinesin family member 9	KIF9	64147	ENSG00000088727			Kif9 (MGI:1098237)
chr3	47380981	47413440	3p21.3	3p21.31	606584	PTPN23, KIAA1471, HDPTP	Protein-tyrosine phosphatase, nonreceptor-type, 23	PTPN23	25930	ENSG00000076201			Ptpn23 (MGI:2144837)
chr3	47413684	47477125	3p21.31	3p21.31	601510	SCAP	SREBP cleavage-activating protein	SCAP	22937	ENSG00000114650			Scap (MGI:2135958)
chr3	47495639	47513724	3p21.31	3p21.31	615020	ELP6, TMEM103, C3orf75	Elongator acetyltransferase complex, subunit 6	ELP6	54859	ENSG00000163832			Elp6 (MGI:1919349)
chr3	47585887	47781914	3p23-p21	3p21.31	601732	SMARCC1, BAF155	SWI/SNF related, matrix-associated, actin-dependent regulator of chromatin, subfamily C, member 1	SMARCC1	6599	ENSG00000173473			Smarcc1 (MGI:1203524)
chr3	47802908	47850195	3p21.31	3p21.31	616423	DHX30, DDX30, RETCOR, KIAA0890, NEDMIAL	DEAH box polypeptide 30	DHX30	22907	ENSG00000132153		Neurodevelopmental disorder with severe motor impairment and absent language, 617804 (3)	Dhx30 (MGI:1920081)
chr3	47850689	48089278	3p21	3p21.31	157132	MAP4	Microtubule-associated protein 4	MAP4	4134	ENSG00000047849			Map4 (MGI:97178)
chr3	48157177	48188404	3p21	3p21.31	116947	CDC25A	Cell division cycle 25A	CDC25A	993	ENSG00000164045			Cdc25a (MGI:103198)
chr3	48223346	48225490	3p21.3	3p21.31	600474	CAMP, FALL39	Cathelicidin antimicrobial peptide	CAMP	820	ENSG00000164047			Camp (MGI:108443)
chr3	48241087	48275292	3p21	3p21.31	616702	ZNF589, SZF1	Zinc finger protein 589	ZNF589	51385	ENSG00000164048			
chr3	48288401	48302903	3p21.3	3p21.31	608294	NME6	Nonmetastatic cells 6, protein expressed in	NME6	10201	ENSG00000172113			Nme6 (MGI:1861676)
chr3	48372218	48394829	3p21	3p21.31	609075	FBXW12, FBW12, FBXO35, FBXO12	F-box and WD40 domain protein 12	FBXW12	285231	ENSG00000164049			
chr3	48403853	48430323	3pter-p14	3p21.31	601053	SEP	SEP transmembrane protein	PLXNB1	5364	ENSG00000164050			Plxnb1 (MGI:2154238)
chr3	48440237	48444207	3p21.31	3p21.31	615808	TMA7, HSPC016	Translation machinery-associated 7, S. cerevisiae, homolog of	TMA7	51372	ENSG00000232112			Tma7 (MGI:1913417)
chr3	48446709	48465654	3p21.3-p21.2	3p21.31	606605	ATRIP	ATR-interacting protein	ATRIP	84126	ENSG00000164053			Atrip (MGI:1925349)
chr3	48465951	48467644	3p21.3-p21.2	3p21.31	606609	TREX1, AGS1, CRV, HERNS	3' repair exonuclease 1	TREX1	11277	ENSG00000213689		Aicardi-Goutieres syndrome 1, dominant and recessive, 225750 (3), Autosomal recessive, Autosomal dominant; Chilblain lupus, 610448 (3), Autosomal dominant; {Systemic lupus erythematosus, susceptibility to}, 152700 (3), Autosomal dominant; Vasculopathy, retinal, with cerebral leukodystrophy, 192315 (3), Autosomal dominant	Trex1 (MGI:1328317)
chr3	48467797	48504825	3p21.3	3p21.31	607290	SHISA5, SCOTIN	Shisa family, member 5	SHISA5	51246	ENSG00000164054	pseudogene on Xq13.1-q13.3		Shisa5 (MGI:1915044)
chr3	48517683	48562382	3p22-p21	3p21.31	605320	PFKFB4	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4	PFKFB4	5210	ENSG00000114268			Pfkfb4 (MGI:2687284)
chr3	48561717	48563767	3p21.3	3p21.31	605902	UCN2, SRP, UR	Urocortin II	UCN2	90226	ENSG00000145040			Ucn2 (MGI:2176375)
chr3	48564072	48595301	3p21.3	3p21.31	120120	COL7A1, NDNC8	Collagen VII, alpha-1 polypeptide	COL7A1	1294	ENSG00000114270		EBD inversa, 226600 (3), Autosomal recessive; EBD, Bart type, 132000 (3), Autosomal dominant; EBD, localisata variant (3); Epidermolysis bullosa dystrophica, AD, 131750 (3), Autosomal dominant; Epidermolysis bullosa dystrophica, AR, 226600 (3), Autosomal recessive; Epidermolysis bullosa pruriginosa, 604129 (3), Autosomal recessive, Autosomal dominant; Epidermolysis bullosa, pretibial, 131850 (3), Autosomal recessive, Autosomal dominant; Toenail dystrophy, isolated, 607523 (3), Autosomal dominant; Transient bullous of the newborn, 131705 (3), Autosomal recessive, Autosomal dominant	Col7a1 (MGI:88462)
chr3	48598998	48609664	3p21.3	3p21.31	191328	UQCRC1	Ubiquinol-cytochrome c reductase core protein I	UQCRC1	7384	ENSG00000010256	close upstream of COL7A1		Uqcrc1 (MGI:107876)
chr3	48625722	48635492	3p21.3	3p21.31	610068	SLC26A6	Solute carrier family 26 (anion transporter), member 6	SLC26A6	65010	ENSG00000225697			Slc26a6 (MGI:2159728)
chr3	48636462	48662914	3p24.1-p21.2	3p21.31	604264	CELSR3, EGFL1, MEGF2	Cadherin EGF LAG seven-pass G-type receptor 3 (epidermal growth factor-like 1)	CELSR3	1951	ENSG00000008300			Celsr3 (MGI:1858236)
chr3	48663813	48685940	3p21	3p21.31	606671	NCKIPSD, AF3P21, SPIN90	NCK-interacting protein with SH3 domain	NCKIPSD	51517	ENSG00000213672			Nckipsd (MGI:1931834)
chr3	48688002	48717277	3p21	3p21.31	606992	IHPK2, IP6K2	Inositol hexaphosphate kinase 2	IP6K2	51447	ENSG00000068745			Ip6k2 (MGI:1923750)
chr3	48744600	48847849	3p21.3-p21.2	3p21.31	176910	PRKAR2A	Protein kinase, cAMP-dependent, regulatory, type II, alpha	PRKAR2A	5576	ENSG00000114302			Prkar2a (MGI:108025)
chr3	48856922	48898992	3p21.31	3p21.31	613698	SLC25A20, CACT, CAC	Solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 (carnitine-acylcarnitine translocase)	SLC25A20	788	ENSG00000178537	pseudogene on 6p12	Carnitine-acylcarnitine translocase deficiency, 212138 (3), Autosomal recessive	Slc25a20 (MGI:1928738)
chr3	48918819	48985540	3p21	3p21.31	605615	ARIH2, ARI2, TRIAD1	Ariadne, Drosophila, homolog of, 2	ARIH2	10425	ENSG00000177479			Arih2 (MGI:1344361)
chr3	48989907	49007148	3p21.31	3p21.31	614584	P4HTM, PH4	Prolyl 4-hydroxylase, transmembrane	P4HTM	54681	ENSG00000178467			P4htm (MGI:1921693)
chr3	49007061	49015952	3p21.31	3p21.31	606031	WDR6	WD repeat-containing protein 6	WDR6	11180	ENSG00000178252	previously assigned to 15q21 by FISH		Wdr6 (MGI:1930140)
chr3	49020474	49023494	3p21.31	3p21.31	612911	NDUFAF3	NADH dehydrogenase 1 alpha subcomplex, assembly factor 3	NDUFAF3	25915	ENSG00000178057		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufaf3 (MGI:1913956)
chr3	49020617	49020708	3p21.31	3p21.31	615150	MIR191	Micro RNA 191	MIR191	406966				
chr3	49024324	49029749	3p21.2	3p21.31	146691	IMPDH2, IMPD2	Inosine-5'-monophosphate dehydrogenase, type II	IMPDH2	3615	ENSG00000178035		[IMPDH2 enzyme activity, variation in] (3)	Impdh2,Impdh2-ps (MGI:3705743,MGI:109367)
chr3	49029706	49094372	3p21.31	3p21.31	617387	QRICH1	Glutamine-rich protein 1	QRICH1	54870	ENSG00000198218			Qrich1 (MGI:1916482)
chr3	49095931	49105128	3p21	3p21.31	603727	QARS, GLNRS, MSCCA	Glutaminyl-tRNA synthetase	QARS	5859	ENSG00000172053		Microcephaly, progressive, seizures, and cerebral and cerebellar atrophy, 615760 (3), Autosomal recessive	
chr3	49108045	49120937	3p21.31	3p21.31	614471	USP19, KIAA0891	Ubiquitin-specific protease 19	USP19	10869	ENSG00000172046			Usp19 (MGI:1918722)
chr3	49121113	49133165	3p21	3p21.31	150325	LAMB2, LAMS, NPHS5	Laminin, beta-2 (laminin S)	LAMB2	3913	ENSG00000172037		Nephrotic syndrome, type 5, with or without ocular abnormalities, 614199 (3); Pierson syndrome, 609049 (3), Autosomal recessive	Lamb2 (MGI:99916)
chr3	49171119	49176486	3p21.31	3p21.31	613169	KLHDC8B, CHL	Kelch domain-containing protein 8B	KLHDC8B	200942	ENSG00000185909		{Hodgkin lymphoma, susceptibility to}, 236000 (3), Autosomal recessive	Klhdc8b (MGI:1925517)
chr3	49274119	49274185	3p21.31	3p21.31	617176	MIR4271	Micro RNA 4271	MIR4271	100422952				
chr3	49277143	49340102	3p21.31	3p21.31	603486	USP4, UNP	Ubiquitin-specific protease-4	USP4	7375	ENSG00000114316			Usp4 (MGI:98905)
chr3	49357170	49358599	3p21.3	3p21.31	138320	GPX1, GPXD	Glutathione peroxidase-1	GPX1	2876	ENSG00000233276	?pseudogene on 3p11-p12	Hemolytic anemia due to glutathione peroxidase deficiency, 614164 (1), Autosomal recessive	Gpx1 (MGI:104887)
chr3	49359135	49412096	3p21.3	3p21.31	165390	RHOA, ARHA, ARH12, RHOH12	Ras homolog gene family, member A (oncogene RHO H12)	RHOA	387	ENSG00000067560			Rhoa (MGI:1096342)
chr3	49412205	49416475	3p21	3p21.31	600690	TCTA	T-cell leukemia translocation altered gene	TCTA	6988	ENSG00000145022			Tcta (MGI:1918829)
chr3	49416777	49422677	3p21.2-p21.1	3p21.31	238310	AMT, NKH, GCE	Aminomethyltransferase (glycine cleavage system protein T)	AMT	275	ENSG00000145020		Glycine encephalopathy, 605899 (3), Autosomal recessive	Amt (MGI:3646700)
chr3	49422332	49429323	3p21	3p21.31	611516	NICN1	Nicolin 1	NICN1	84276	ENSG00000145029	processed pseudogene on X		Nicn1 (MGI:1913507)
chr3	49468702	49535617	3p21	3p21.31	128239	DAG1, DAG, MDDGC9, MDDGA9	Dystrophin-associated glycoprotein-1	DAG1	1605	ENSG00000173402		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 9, 616538 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 9, 613818 (3), Autosomal recessive	Dag1 (MGI:101864)
chr3	49554488	49671548	3p21.31	3p21.31	604020	BSN, ZNF231	Bassoon, mouse, homolog of	BSN	8927	ENSG00000164061			Bsn (MGI:1277955)
chr3	49673101	49683507	3p21	3p21.31	102645	APEH, D3S48E	N-acylaminoacyl-peptide hydrolase	APEH	327	ENSG00000164062			Apeh (MGI:88041)
chr3	49683946	49689522	3p21	3p21.31	142408	MST1, HGFL	Macrophage-stimulating-1 (hepatocyte growth factor-like)	MST1	4485	ENSG00000173531			Mst1 (MGI:96080)
chr3	49688752	49721528	3p21.31	3p21.31	614472	RNF123, KPC1	Ring finger protein 123	RNF123	63891	ENSG00000164068			Rnf123 (MGI:2148796)
chr3	49716833	49719804	3p21.31	3p21.31	615691	AMIGO3, ALI3	Adhesion molecule with Ig-like domain 3	AMIGO3	386724	ENSG00000176020			Amigo3 (MGI:2444854)
chr3	49721475	49723973	3p21.31	3p21.31	615320	GMPPB, KIAA1851, MDDGA14, MDDGB14, MDDGC14	GDP-mannose pyrophosphorylase B	GMPPB	29925	ENSG00000173540		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 14, 615350 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 14, 615351 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 14, 615352 (3), Autosomal recessive	Gmppb (MGI:2660880)
chr3	49724294	49786539	3p21.31	3p21.31	606991	IHPK1, IP6K1, KIAA0263	Inositol hexaphosphate kinase 1	IP6K1	9807	ENSG00000176095			Ip6k1 (MGI:1351633)
chr3	49805204	49813957	3p21	3p21.31	191325	UBE7, UBE1L	Ubiquitin-activating enzyme-7	UBA7	7318	ENSG00000182179			Uba7 (MGI:1349462)
chr3	49828594	49856583	3p21.31	3p21.31	605958	TRAIP, TRIP, RNF206, SCKL9	TRAF-interacting protein	TRAIP	10293	ENSG00000183763		Seckel syndrome 9, 616777 (3), Autosomal recessive	Traip (MGI:1096377)
chr3	49857980	49870221	3p21.31	3p21.31	614993	CAMKV, 1G5	CAM kinase-like vesicle-associated	CAMKV	79012	ENSG00000164076			Camkv (MGI:2384296)
chr3	49886470	49903636	3p21.3	3p21.31	600168	MST1R, RON, NPCA3	Macrophage stimulating 1 receptor (c-met-related tyrosine kinase)	MST1R	4486	ENSG00000164078		{Nasopharyngeal carcinoma, susceptibility to, 3}, 617075 (3), Autosomal dominant	Mst1r (MGI:99614)
chr3	49908868	49930011	3p21.31	3p21.31	611464	MON1A, SAND1	Mon1, S. cerevisiae, homolog of, A	MON1A	84315	ENSG00000164077			Mon1a (MGI:1920075)
chr3	49940040	50077251	3p21.3	3p21.31	606886	RBM6, DEF3	RNA-binding motif protein 6	RBM6	10180	ENSG00000004534			Rbm6 (MGI:1338037)
chr3	50088907	50118963	3p21.3	3p21.31	606884	RMB5, LUCA15	RNA-binding motif protein 5	RBM5	10181	ENSG00000003756			Rbm5 (MGI:1933204)
chr3	50155044	50189074	3p21.3	3p21.31	601124	SEMA3F, SEMA4	Semaphorin III/F	SEMA3F	6405	ENSG00000001617			Sema3f (MGI:1096347)
chr3	50191609	50197695	3p21	3p21.31	139330	GNAT1, CSNBAD3, CSNB1G	Guanine nucleotide-binding protein (G protein), alpha-transducing (transducin) activity polypeptide-1	GNAT1	2779	ENSG00000114349		Night blindness, congenital stationary, autosomal dominant 3, 610444 (3), Autosomal dominant; Night blindness, congenital stationary, type 1G, 616389 (3), Autosomal recessive	Gnat1 (MGI:95778)
chr3	50205245	50221485	3p21.3	3p21.31	604437	SLC38A3, SN1, G17	Solute carrier family 38, member 3	SLC38A3	10991	ENSG00000188338			Slc38a3 (MGI:1923507)
chr3	50226687	50259353	3p21	3p21.31	139360	GNAI2, GNAI2B, GIP	Guanine nucleotide-binding protein (G protein), alpha-inhibiting activity polypeptide-2	GNAI2	2771	ENSG00000114353	on 12p13-p12, GNAI2L	Pituitary ACTH-secreting adenoma (3); Ventricular tachycardia, idiopathic, 192605 (3), Autosomal dominant	Gnai2 (MGI:95772)
chr3	50267557	50277170	3p21.3	3p21.31	601281	SEMA5	Semaphorin A(V)	SEMA3B	7869	ENSG00000012171			Sema3b (MGI:107561)
chr3	50287731	50292594	3p21.3	3p21.31	602725	IFRD2	Interferon-related developmental regulator-2	IFRD2	7866	ENSG00000214706			Ifrd2 (MGI:1316708)
chr3	50292827	50299467	3p21.3	3p21.31	604038	HYAL3, LUCA3	Hyaluronoglucosaminidase 3	HYAL3	8372	ENSG00000186792			Hyal3 (MGI:1330288)
chr3	50296401	50299420	3p21.3	3p21.31	607073	FUS2	FUS2 gene	NAT6	24142	ENSG00000243477			Nat6 (MGI:1888902)
chr3	50299888	50312950	3p21.3-p21.2	3p21.31	607071	HYAL1, MPS9	Hyaluronoglucosaminidase 1	HYAL1	3373	ENSG00000114378	mutation identified in 1 MPS9 patient	?Mucopolysaccharidosis type IX, 601492 (3), Autosomal recessive	Hyal1 (MGI:96298)
chr3	50317789	50322849	3p21.3	3p21.31	603551	HYAL2, LUCA2	Hyaluronoglucosaminidase 2	HYAL2	8692	ENSG00000068001			Hyal2 (MGI:1196334)
chr3	50324908	50328237	3p21.3	3p21.31	607052	FUS1	FUS1 gene	TUSC2	11334	ENSG00000114383			Tusc2 (MGI:1931086)
chr3	50329785	50340935	3p21.3	3p21.31	605082	RASSF1	RAS association domain family protein 1	RASSF1	11186	ENSG00000068028	epigenetically inactivated	Lung cancer, 211980 (2), Autosomal recessive	Rassf1 (MGI:1928386)
chr3	50341105	50345745	3p21.3	3p21.31	607070	ZMYND10, BLU	Zinc finger MYND domain-containing protein 10	ZMYND10	51364	ENSG00000004838		Ciliary dyskinesia, primary, 22, 615444 (3), Autosomal recessive	Zmynd10 (MGI:2387863)
chr3	50347486	50351054	3p21.3	3p21.31	607072	NPR2L, NPRL2, FFEVF2	Npr2, S. cerevisiae, homolog of	NPRL2	10641	ENSG00000114388		Epilepsy, familial focal, with variable foci 2, 617116 (3), Autosomal dominant	Nprl2 (MGI:1914482)
chr3	50350694	50368196	3p21.3	3p21.31	607068	CYB561D2, 101F6	Cytochrome b-561 domain containing 2	CYB561D2	11068	ENSG00000114395			Cyb561d2 (MGI:1929280)
chr3	50354748	50359507	3p21.3	3p21.31	607069	TMEM115, PL6	Transmembrane protein 115	TMEM115	11070	ENSG00000126062			
chr3	50362612	50504243	3p21.3	3p21.31	607082	CACNA2D2, KIAA0558	Calcium channel, voltage-dependent, alpha-2/delta subunit 2	CACNA2D2	9254	ENSG00000007402			Cacna2d2 (MGI:1929813)
chr3	50606453	50611830	3p21.3	3p21.2	602441	CISH, BACTS2	Cytokine inducible SH2-containing protein	CISH	1154	ENSG00000114737		{Bacteremia, susceptibility to}, 614383 (3); {Malaria, susceptibility to}, 611162 (3); {Tuberculosis, susceptibility to}, 607948 (3)	Cish (MGI:103159)
chr3	50611861	50649296	3p21.3	3p21.2	602130	MAPKAP3, 3PK, MDPT3	Mitogen-activated protein kinase-activated protein kinase-3	MAPKAPK3	7867	ENSG00000114738	mutation identified in 1 MDPT3 family	?Macular dystrophy, patterned, 3, 617111 (3), Autosomal dominant	Mapkapk3 (MGI:2143163)
chr3	50674968	51384197	3p14	3p21.2	603123	DOCK3	Dedicator of cytokinesis 3	DOCK3	1795	ENSG00000088538			Dock3 (MGI:2429763)
chr3	51385236	51389396	3p21.1	3p21.2	601916	ARMET, ARP	Arginine-rich protein, mutated in early stage tumors	MANF	7873	ENSG00000145050			Manf (MGI:1922090)
chr3	51391267	51397907	3p21.1	3p21.2	612602	RBM15B, OTT3, HUMAGCGB	RNA-binding motif protein 15B	RBM15B	29890	ENSG00000259956			Rbm15b (MGI:1923598)
chr3	51394260	51505619	3p21.2	3p21.2	617259	DCAF1, RIP, VPRBP, KIAA0800	DDB1- and CUL4-associated factor 1	DCAF1	9730	ENSG00000145041			Dcaf1 (MGI:2445220)
chr3	51707032	51718615	3p21.2-p21.1	3p21.2	604099	GRM2, MGLUR2	Glutamate receptor, metabotropic, 2	GRM2	2912	ENSG00000164082			Grm2 (MGI:1351339)
chr3	51942276	51948866	3p21.3-p21.1	3p21.2	607726	PARP3, ADPRTL3	Poly(ADP-ribose) polymerase 3	PARP3	10039	ENSG00000041880			Parp3 (MGI:1891258)
chr3	51955313	51957503	3p21.1	3p21.2	606917	GPR62	G protein-coupled receptor 62	GPR62	118442	ENSG00000180929			Gpr62 (MGI:3525078)
chr3	51957453	51967465	3p21.2	3p21.2	608503	PCBP4, MGC10	Poly(rC)-binding protein 4	PCBP4	57060	ENSG00000090097			Pcbp4 (MGI:1890471)
chr3	51983283	51989201	3p21.1	3p21.2	104620	ACY1, ACY1D	Aminoacylase-1	ACY1	95	ENSG00000243989		Aminoacylase 1 deficiency, 609924 (3), Autosomal recessive	Acy1 (MGI:87913)
chr3	51993606	51995941	3q29-qter	3p21.2	601832	RPL29, HIP	Ribosomal protein L29	RPL29	6159	ENSG00000162244			
chr3	52048918	52056444	3p21	3p21.2	602749	DUSP7, MKPX, PYST2	Dual-specificity phosphatase-7	DUSP7	1849	ENSG00000164086			Dusp7 (MGI:2387100)
chr3	52075232	52154689	3p21.2	3p21.2	614783	POC1A, PIX2, SOFT	POC1 centriolar protein, Chlamydomonas, homolog of, A	POC1A	25886	ENSG00000164087		Short stature, onychodysplasia, facial dysmorphism, and hypotrichosis, 614813 (3), Autosomal recessive	Poc1a (MGI:1917485)
chr3	52198082	52214326	3p21.1	3p21.2	125290	ALAS1	Aminolevulinate, delta-, synthase-1	ALAS1	211	ENSG00000023330			Alas1 (MGI:87989)
chr3	52221079	52226162	3p21.3	3p21.2	605474	TLR9	Toll-like receptor 9	TLR9	54106	ENSG00000239732			Tlr9 (MGI:1932389)
chr3	52228609	52239166	3p21.1	3p21.2	607433	TWF2, PTK9L, A6RP	Twinfilin, actin-binding protein, Drosophila, homolog of, 2	TWF2	11344	ENSG00000247596			Twf2 (MGI:1346078)
chr3	52245724	52250598	3p21.2	3p21.2	608979	PPM1M, PP2CE	Protein phosphatase 1M (protein phosphatase 2C, eta isoform)	PPM1M	132160	ENSG00000164088			Ppm1m (MGI:1915155)
chr3	52254421	52278642	3p21.1	3p21.2	611059	WDR82, TMEM113	WD repeat-containing protein 82	WDR82	80335	ENSG00000164091			Wdr82 (MGI:1924555)
chr3	52268277	52268360	3p21.1	3p21.2	612102	MIRLET7G, LET7G, MIRNLET7G	Micro RNA Let7G	MIRLET7G	406890				
chr3	52287557	52295255	3p21	3p21.2	610516	GLYCTK, GLYCTK1	Glycerate kinase	GLYCTK	132158	ENSG00000168237		D-glyceric aciduria, 220120 (3), Autosomal recessive	Glyctk (MGI:2444085)
chr3	52313009	52400496	3p21.3	3p21.1	603332	DNAH1, HL11, DNAHC1, HDHC7, SPGF18, CILD37	Dynein, axonemal, heavy chain-1	DNAH1	25981	ENSG00000114841	mutation identified in 1 CILD37 family	?Ciliary dyskinesia, primary, 37, 617577 (3), Autosomal recessive; Spermatogenic failure 18, 617576 (3), Autosomal recessive	Dnah1 (MGI:107721)
chr3	52401003	52410104	3p21.3	3p21.1	603089	BAP1, TPDS	BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)	BAP1	8314	ENSG00000163930		Tumor predisposition syndrome, 614327 (3), Autosomal dominant	Bap1 (MGI:1206586)
chr3	52451090	52454040	3p21.3-p14.3	3p21.1	191040	TNNC1, CMD1Z, CMH13	Troponin-C1, slow	TNNC1	7134	ENSG00000114854		Cardiomyopathy, dilated, 1Z, 611879 (3); Cardiomyopathy, hypertrophic, 13, 613243 (3), Autosomal dominant	Tnnc1 (MGI:98779)
chr3	52455507	52493071	3p21.1	3p21.1	615507	NISCH, IRAS, KIAA0975	Nischarin	NISCH	11188	ENSG00000010322			
chr3	52545351	52685906	3p21	3p21.1	606083	PBRM1, PB1, BAF180	Polybromo 1, chicken, homolog of	PBRM1	55193	ENSG00000163939			Pbrm1 (MGI:1923998)
chr3	52685919	52694496	3p21.1	3p21.1	608011	GNL3, NS, E2IG3	Guanine nucleotide-binding protein-like 3	GNL3	26354	ENSG00000163938			Gnl3 (MGI:1353651)
chr3	52705840	52708181	3p21.1	3p21.1	610358	SPCS1, SPC12	Signal peptidase complex, subunit 1, S. cerevisiae, homolog of	SPCS1	28972	ENSG00000114902			Spcs1 (MGI:1916269)
chr3	52708448	52770948	3p21.1	3p21.1	601959	NEK4, STK2, NRK2	NIMA (never in mitosis gene a)-related kinase 4 (serine/threonine protein kinase-2)	NEK4	6787	ENSG00000114904			Nek4 (MGI:1344404)
chr3	52777585	52792067	3p21.2-p21.1	3p21.1	147270	ITIH1	Inter-alpha (globulin) inhibitor, H1 polypeptide	ITIH1	3697	ENSG00000055957			Itih1 (MGI:96618)
chr3	52794767	52809008	3p21.2-p21.1	3p21.1	146650	ITIH3	Inter-alpha (globulin) inhibitor, H3 polypeptide	ITIH3	3699	ENSG00000162267			Itih3 (MGI:96620)
chr3	52812989	52830700	3p21.2-p14.1	3p21.1	600564	ITIH4, PK120, ITIHL1	Inter-alpha (globulin) inhibitor, H4 polypeptide	ITIH4	3700	ENSG00000055955		{Hypercholesterolemia, susceptibility to}, 143890 (3), Autosomal dominant	Itih4 (MGI:109536)
chr3	52833114	52835218	3p21.1	3p21.1	617195	MUSTN1, MUSTANG	Musculoskeletal embryonic nuclear protein 1	MUSTN1	389125	ENSG00000272573			Mustn1 (MGI:1913425)
chr3	52836755	52897580	3p21.1	3p21.1	617189	TMEM110, STIMATE	Transmembrane protein 110	STIMATE	375346	ENSG00000213533			
chr3	52899208	53046654	3p21.1	3p21.1	607319	SFMBT1, RU1	SCM-like protein with 4 MBT domains 1	SFMBT1	51460	ENSG00000163935			Sfmbt1 (MGI:1859609)
chr3	53071150	53130468	3p21.1	3p21.1	611908	RFT1, CDG1N	RFT1, S. cerevisiae, homolog of	RFT1	91869	ENSG00000163933		Congenital disorder of glycosylation, type In, 612015 (3), Autosomal recessive	Rft1 (MGI:3607791)
chr3	53161206	53192716	3p	3p21.1	176977	PRKCD, CVID9, ALPS3	Protein kinase C, delta	PRKCD	5580	ENSG00000163932	mutation identified in 1 family	Autoimmune lymphoproliferative syndrome, type III, 615559 (3), Autosomal recessive	Prkcd (MGI:97598)
chr3	53224706	53256113	3p14.3	3p21.1	606781	TKT, SDDHD	Transketolase	TKT	7086	ENSG00000163931		Short stature, developmental delay, and congenital heart defects, 617044 (3), Autosomal recessive	Tkt (MGI:105992)
chr3	53283422	53347626	3p21.1	3p21.1	607010	DCP1A, SMIF	Decapping enzyme 1, X. cerevisiae, homolog of, A	DCP1A	55802	ENSG00000272886			Dcp1a (MGI:1923151)
chr3	53495048	53813150	3p21.1	3p21.1	114206	CACNA1D, CACNL1A2, CCHL1A2, SANDD, PASNA	Calcium channel, voltage-dependent, L type, alpha 1D subunit	CACNA1D	776	ENSG00000157388		Primary aldosteronism, seizures, and neurologic abnormalities, 615474 (3), Autosomal dominant; Sinoatrial node dysfunction and deafness, 614896 (3), Autosomal recessive	Cacna1d (MGI:88293)
chr3	53846549	53867387	3p21.1	3p21.1	605458	IL17RB, IL17BR, IL17RH1	Interleukin 17, receptor B	IL17RB	55540	ENSG00000056736			Il17rb (MGI:1355292)
chr3	53884975	53892014	3p21.31	3p21.1	607916	SELENOK, SELK, HSPC030	Selenoprotein K	SELENOK	58515	ENSG00000113811			Selenok (MGI:1931466)
chr3	54122593	55074556	3p21.1	3p21.1-p14.3	606399	CACNA2D3	Calcium channel, voltage-dependent, alpha-2/delta subunit 3	CACNA2D3	55799	ENSG00000157445			Cacna2d3 (MGI:1338890)
chr3	54400000	122200000	3p14-q13		608586	KTCN3	Keratoconus 3		406215			Keratoconus 3, 608586 (2)	
chr3	54632123	54639856	3p14.3	3p14.3	611473	HESRG	Embryonic stem cell-related protein	ESRG	790952				
chr3	55465714	55505260	3p21-p14	3p14.3	164975	WNT5A	Wingless-type MMTV integration site family, member 5A	WNT5A	7474	ENSG00000114251		Robinow syndrome, autosomal dominant 1, 180700 (3), Autosomal dominant	Wnt5a (MGI:98958)
chr3	55508310	56468472	3p14.3	3p14.3	617250	ERC2, CAST, KIAA0378	ELKS/RAB6-interacting/CAST family, member 2	ERC2	26059	ENSG00000187672			Erc2 (MGI:1098749)
chr3	56620131	56683236	3p14.3	3p14.3	616493	FAM208A, RAP140, C3orf63, KIAA1105	Family with sequence similarity 208, member A	FAM208A	23272	ENSG00000163946			Fam208a (MGI:1921694)
chr3	56727417	57079307	3p21-p13	3p14.3	612115	ARHGEF3, XPLN	RHO guanine nucleotide exchange factor 3	ARHGEF3	50650	ENSG00000163947			Arhgef3 (MGI:1918954)
chr3	57060440	57075431	3p21.2-p21.1	3p14.3	609869	SPATA12, SRG5	Spermatogenesis-associated protein 12	SPATA12	353324	ENSG00000186451			
chr3	57089981	57170316	3p14.3-p14.2	3p14.3	606807	IL17RD, SEF, HH18	Interleukin 17, receptor D (Sef, zebrafish, homolog of)	IL17RD	54756	ENSG00000144730		Hypogonadotropic hypogonadism 18 with or without anosmia, 615267 (3), Autosomal recessive, Autosomal dominant	Il17rd (MGI:2159727)
chr3	57197837	57227642	3p21.2-p21.1	3p14.3	601802	HESX1, RPX, CPHD5	Homeo box gene expressed in ES cells	HESX1	8820	ENSG00000163666		Growth hormone deficiency with pituitary anomalies, 182230 (3), Autosomal recessive, Autosomal dominant; Pituitary hormone deficiency, combined, 5, 182230 (3), Autosomal recessive, Autosomal dominant; Septooptic dysplasia, 182230 (3), Autosomal recessive, Autosomal dominant	Hesx1 (MGI:96071)
chr3	57227736	57273470	3p21.1-p14.3	3p14.3	604299	APPL1, APPL, MODY14	Adaptor protein containing PH domain, PTB domain, and leucine zipper motif 1	APPL1	26060	ENSG00000157500		{Maturity-onset diabetes of the young, type 14}, 616511 (3), Autosomal dominant	Appl1 (MGI:1920243)
chr3	57293698	57545202	3p21.1	3p14.3	603340	DNAH12, DNAHC3, HL19	Dynein, heavy chain-5	DNAH12	201625	ENSG00000174844			Dnah12 (MGI:107720)
chr3	57556246	57656479	3q21.2	3p14.3	616519	PDE12	Phosphodiesterase 12	PDE12	201626	ENSG00000174840			Pde12 (MGI:2443226)
chr3	57571362	57597487	3p14.1	3p14.3	601177	ARF4, ARF2	ADP-ribosylation factor 4	ARF4	378	ENSG00000168374			Arf4 (MGI:99433)
chr3	57756228	57930012	3p21.2-p14.3	3p14.3	602701	SLAP	Sarcolemmal-associated protein	SLMAP	7871	ENSG00000163681			Slmap (MGI:1933549)
chr3	58008399	58172254	3p14.3	3p14.3	603381	FLNB, SCT, AOI, LRS1	Filamin B	FLNB	2317	ENSG00000136068		Atelosteogenesis, type I, 108720 (3), Autosomal dominant; Atelosteogenesis, type III, 108721 (3), Autosomal dominant; Boomerang dysplasia, 112310 (3), Autosomal dominant; Larsen syndrome, 150250 (3), Autosomal dominant; Spondylocarpotarsal synostosis syndrome, 272460 (3), Autosomal recessive	Flnb (MGI:2446089)
chr3	58192625	58211002	3p21.1-p14.3	3p14.3	602244	DNASE1L3, SLEB16	Deoxyribonuclease I-like 3	DNASE1L3	1776	ENSG00000163687		Systemic lupus erythematosus 16, 614420 (3), Autosomal recessive	Dnase1l3 (MGI:1314633)
chr3	58237501	58294735	3p14.3	3p14.3	616966	ADHB6	Abhydrolase domain-containing protein 6	ABHD6	57406	ENSG00000163686			Abhd6 (MGI:1913332)
chr3	58306244	58320192	3p14.3	3p14.3	606112	RPP14	Ribonuclease P, 14kD subunit	RPP14	11102	ENSG00000163684			Rpp14 (MGI:1914303)
chr3	58332889	58426126	3p14.3	3p14.3	611450	PXK, MONAKA	PXK domain-containing serine/threonine kinase	PXK	54899	ENSG00000168297			Pxk (MGI:1289230)
chr3	58427629	58433851	3p13-q23	3p14.3	179060	PDHB, PDHBD	Pyruvate dehydrogenase, E1 beta polypeptide	PDHB	5162	ENSG00000168291		Pyruvate dehydrogenase E1-beta deficiency, 614111 (3)	Pdhb (MGI:1915513)
chr3	58505135	58537201	3p14.3	3p14.3	601641	ACOX2, BRCACOX, CBAS6	Acyl-Coenzyme A oxidase 2, branched chain	ACOX2	8309	ENSG00000168306		Bile acid synthesis defect, congenital, 6, 617308 (3), Autosomal recessive	Acox2 (MGI:1934852)
chr3	58564111	58627609	3p21.1	3p14.3-p14.2	608295	FAM107A, DRR1, TU3A	Family with sequence similarity 107, member A (downregulated in renal cell carcinoma 1)	FAM107A	11170	ENSG00000168309			Fam107a (MGI:3041256)
chr3	58633942	58666842	3p14.2	3p14.2	608619	FAM3D	Family with sequence similarity 3, member D	FAM3D	131177	ENSG00000198643			Oit1 (MGI:1201784)
chr3	59747277	61251473	3p14.2	3p14.2	601153	FRA3B, FHIT	Fragile histidine triad gene	FHIT	2272	ENSG00000189283	deleted in RCC		Fhit (MGI:1277947)
chr3	61561568	62297608	3p14.2	3p14.2	176886	PTPRG, PTPG	Protein tyrosine phosphatase, receptor type, gamma polypeptide	PTPRG	5793	ENSG00000144724			Ptprg (MGI:97814)
chr3	62369671	62373514	3p14.2	3p14.2	607414	FEZF2, ZNF312, FEZL, TOF	FEZ family zinc finger 2	FEZF2	55079	ENSG00000153266			Fezf2 (MGI:1859823)
chr3	62398345	62875864	3p21.1	3p14.2	604667	CADPS, CAPS	Ca(2+)-dependent activator protein for secretion	CADPS	8618	ENSG00000163618			Cadps (MGI:1350922)
chr3	63652667	63665216	3p14.2	3p14.2	617832	SNTN, S100AL, S100A1L	Sentan, cilia apical structural protein	SNTN	132203	ENSG00000188817			Sntn (MGI:3045373)
chr3	63800000	103100000	3p14.1-q12.3		610948	HYT7	Hypertension, essential, susceptibility to, 7		100188825			{Hypertension, essential, susceptibility to, 7}, 610948 (2)	
chr3	63833869	63864477	3p14.1	3p14.1	611965	THOC7, NIF3L1BP1	THO complex, subunit 7	THOC7	80145	ENSG00000163634			Thoc7 (MGI:1913481)
chr3	63864556	64003461	3p14.1	3p14.1	607640	ATXN7, SCA7, OPCA3	Ataxin 7	ATXN7	6314	ENSG00000163635		Spinocerebellar ataxia 7, 164500 (3), Autosomal dominant	Atxn7 (MGI:2179277)
chr3	63911517	63911771	3p14.1	3p14.1	614481	ATXN7AS1, SCAANT1	ATXN7 antisense noncoding transcript 1	SCAANT1	100861563				
chr3	64010548	64024009	3p14.1	3p14.1	617857	PSMD6, KIAA0107	Proteasome 26S subunit, non-ATPase, 6	PSMD6	9861	ENSG00000163636			Psmd6 (MGI:1913663)
chr3	64093849	64445475	3p14	3p14.1	608501	PRICKLE2	Prickle-like 2	PRICKLE2	166336	ENSG00000163637			Prickle2 (MGI:1925144)
chr3	64515653	64687999	3p14.3-p14.2	3p14.1	605421	ADAMTS9	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 9	ADAMTS9	56999	ENSG00000163638			Adamts9 (MGI:1916320)
chr3	65354230	66038833	3p14.1	3p14.1	602625	MAGI1, BAIAP1, WWP3, TNRC19	Membrane-associated guanylate kinase, WW and PDZ domains-containing, 1	MAGI1	9223	ENSG00000151276			Magi1 (MGI:1203522)
chr3	66133609	66380020	3p14.3	3p14.1	611037	SLC25A26, SAMC, COXPD28	Solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26	SLC25A26	115286	ENSG00000144741		Combined oxidative phosphorylation deficiency 28, 616794 (3), Autosomal recessive	Slc25a26 (MGI:1914832)
chr3	66378796	66501262	3p14	3p14.1	608868	LRIG1, LIG1	Leucine-rich repeats- and immunoglobulin-like domains-containing protein 1	LRIG1	26018	ENSG00000144749			Lrig1 (MGI:107935)
chr3	66998302	67011209	3p14.1	3p14.1	616607	KBTBD8, TAKRP, KIAA1842	KELCH repeat- and BTB/POZ domain-containing protein 8	KBTBD8	84541	ENSG00000163376			Kbtbd8 (MGI:2661430)
chr3	67360459	67654613	3p14.1	3p14.1	603922	SUCLG2	Succinate-CoA ligase, GDP-forming, beta subunit	SUCLG2	8801	ENSG00000172340			Suclg2 (MGI:1306824)
chr3	67991591	68546055	3p14.1	3p14.1	617495	FAM19A1, TAFA1	Family with sequence similarity 19, member A1, CC motif chemokine-like	FAM19A1	407738	ENSG00000183662			Fam19a1 (MGI:2443695)
chr3	68731763	68932609	3p14.1	3p14.1	617498	FAM19A4, TAFA4	Family with sequence similarity 19, member A4, CC motif chemokine-like	FAM19A4	151647	ENSG00000163377			Fam19a4 (MGI:2444563)
chr3	68975211	69013960	3p14.1	3p14.1	614789	EOGT, EOGT1, C3orf64, AOS4	EGF domain-specific O-linked N-acetylglucosamine transferase	EOGT	285203	ENSG00000163378		Adams-Oliver syndrome 4, 615297 (3), Autosomal recessive	Eogt (MGI:2141669)
chr3	69019826	69052332	3p21-p12	3p14.1	601126	TMF1	TATA element modulatory factor 1	TMF1	7110	ENSG00000144747			Tmf1 (MGI:2684999)
chr3	69084938	69106087	3p14	3p14.1	605709	ARL6IP5	ADP-ribosylation-like factor 6-interacting protein 5	ARL6IP5	10550	ENSG00000144746			Arl6ip5 (MGI:1929501)
chr3	69108671	69122594	3p14.1	3p14.1	616112	LMOD3, NEM10	Leiomodin 3	LMOD3	56203	ENSG00000163380		Nemaline myopathy 10, 616165 (3), Autosomal recessive	Lmod3 (MGI:2444169)
chr3	69168781	69541339	3p14.1	3p14.1	617467	FRMD4B, GRSP1, KIAA1013	FERM domain-containing protein 4B	FRMD4B	23150	ENSG00000114541			Frmd4b (MGI:2141794)
chr3	69739434	69968336	3p14.1-p12.3	3p13	156845	MITF, WS2A, CMM8, COMMAD	Microphthalmia-associated transcription factor	MITF	4286	ENSG00000187098		COMMAD syndrome, 617306 (3), Autosomal recessive; {Melanoma, cutaneous malignant, susceptibility to, 8}, 614456 (3); Tietz albinism-deafness syndrome, 103500 (3), Autosomal dominant; Waardenburg syndrome, type 2A, 193510 (3), Autosomal dominant; Waardenburg syndrome/ocular albinism, digenic, 103470 (3), Autosomal dominant	Mitf (MGI:104554)
chr3	69999743	70015300	3p13	3p13	616895	SAMMSON, LINC01212	Survival-associated mitochondrial melanoma-specific oncogenic noncoding RNA	SAMMSON	101927152				
chr3	70954713	71583988	3p14.1	3p13	605515	FOXP1, QRF1	Forkhead box P1	FOXP1	27086	ENSG00000114861		Mental retardation with language impairment and with or without autistic features, 613670 (3), Autosomal dominant	
chr3	71679288	71754772	3p14	3p13	609896	EIF4E3	Eukaryotic translation initiation factor 4E family, member 3	EIF4E3	317649	ENSG00000163412			Eif4e3 (MGI:1914142)
chr3	71753723	71756379	3p21-p14	3p13	605187	GPR27, SREB1	G protein-coupled receptor 27	GPR27	2850	ENSG00000170837			Gpr27 (MGI:1202299)
chr3	71771654	71785205	3p21.1	3p13	607002	PROK2, PK2, BV8, HH4	Prokineticin 2	PROK2	60675	ENSG00000163421		Hypogonadotropic hypogonadism 4 with or without anosmia, 610628 (3), Autosomal dominant	Prok2 (MGI:1354178)
chr3	72374592	72446622	3p13	3p13	607535	RYBP, YEAF1	Ring1- and YY1-binding protein	RYBP	23429				Rybp,Rybp-ps (MGI:3648043,MGI:1929059)
chr3	72725701	72848474	3p13	3p13	613663	SHQ1	Shq1, S. cerevisiae, homolog of	SHQ1	55164	ENSG00000144736			Shq1 (MGI:1919421)
chr3	72848521	72976916	3p13	3p13	613322	GXYLT2, GLT8D4	Glucoside xylosyltransferase 2	GXYLT2	727936	ENSG00000172986			Gxylt2 (MGI:2682940)
chr3	72996742	73069200	3p13	3p13	613822	PPP4R2, PP4R2	Protein phosphatase 4, regulatory subunit 2	PPP4R2	151987	ENSG00000163605			Ppp4r2 (MGI:3027896)
chr3	73061658	73063336	3p14-p13	3p13	613250	EBLN2	Endogenous Borna-like N element-containing protein 2	EBLN2	55096	ENSG00000255423			
chr3	73382429	73624996	3p13	3p13	609729	PDZRN3, KIAA1095	PDZ domain-containing ring finger protein 3	PDZRN3	23024	ENSG00000121440			Pdzrn3 (MGI:1933157)
chr3	74100000	122200000	3p12-q13		606896	DYX5	Dyslexia, susceptibility to, 5	DYX5	171089		?same locus as SSD	{Dyslexia, susceptibility to, 5}, 606896 (2)	
chr3	74100000	113700000	3p12-q13.2		109720	PBC1	Biliary cirrhosis, primary, 1				associated with rs6441286	Biliary cirrhosis, primary, 1, 109720 (2), Autosomal dominant	
chr3	74100000	122200000	3p12-q13		608445	SSD	Speech-sound disorder		404713		?same locus as DYX5	{Speech-sound disorder}, 608445 (2)	
chr3	74262567	74614447	3p26	3p12.3	601325	CNTN3, PANG	Contactin 3 (plasmocytoma-associated neuronal glycoprotein)	CNTN3	5067	ENSG00000113805			Cntn3 (MGI:99534)
chr3	75906674	77649963	3p12.3	3p12.3	602431	ROBO2, SAX3, KIAA1568	Roundabout, Drosophila, homolog of, 2	ROBO2	6092	ENSG00000185008		Vesicoureteral reflux 2, 610878 (3)	Robo2 (MGI:1890110)
chr3	78597237	79767997	3p12	3p12.3	602430	ROBO1, DUTT1, SAX3	Roundabout, Drosophila, homolog of, 1	ROBO1	6091	ENSG00000169855			Robo1 (MGI:1274781)
chr3	81489698	81761798	3p12	3p12.2	607839	GBE1, GSD4, APBD	Glycogen branching enzyme	GBE1	2632			Glycogen storage disease IV, 232500 (3), Autosomal recessive; Polyglucosan body disease, adult form, 263570 (3), Autosomal recessive	Gbe1 (MGI:1921435)
chr3	84958981	86074428	3p12	3p12.1	609938	CADM2, IGSF4D, SYNCAM2, NECL3	Cell adhesion molecule 2	CADM2	253559	ENSG00000175161			Cadm2 (MGI:2442722)
chr3	86937968	86991122	3p12.1	3p12.1	609980	VGLL3, VGL3	Vestigial-like 3	VGLL3	389136	ENSG00000206538			Vgll3 (MGI:1920819)
chr3	87227262	87255547	3p11.2	3p11.2	609512	CHMP2B, DMT1, VPS2B, ALS17	CHMP family, member 2B	CHMP2B	25978	ENSG00000083937		Amyotrophic lateral sclerosis 17, 614696 (3), Autosomal dominant; Dementia, familial, nonspecific, 600795 (3), Autosomal dominant	Chmp2b (MGI:1916192)
chr3	87259632	87276586	3p11	3p11.2	173110	POU1F1, PIT1, CPHD1	POU domain, class 1, transcription factor 1 (Pit1, growth hormone factor 1)	POU1F1	5449	ENSG00000064835		Pituitary hormone deficiency, combined, 1, 613038 (3), Autosomal recessive, Autosomal dominant	Pou1f1 (MGI:97588)
chr3	87792766	87994855	3p12	3p11.2-p11.1	182134	HTR1F, HTR1EL, MR77	5-hydroxytryptamine receptor 1F	HTR1F	3355	ENSG00000179097			Htr1f (MGI:99842)
chr3	88051949	88149865	3p12-p11.1	3p11.1	603363	CGGBP1	CGG triplet repeat binding protein 1	CGGBP1	8545	ENSG00000163320			Cggbp1 (MGI:2146370)
chr3	89107523	89482133	3p11.2	3p11.1	179611	EPHA3, ETK1, HEK	Ephrin receptor EphA3 (human embryo kinase 1)	EPHA3	2042	ENSG00000044524			Epha3 (MGI:99612)
chr3	90900000	122200000	3cen-q13		614012	ERVK-5, HERV-KII	Endogenous retrovirus group K, member 5	ERVK-5	60358				
chr3	93873036	93974089	3q11.2	3q11.1	176880	PROS1, THPH5, THPH6	Protein S, alpha	PROS1	5627	ENSG00000184500	pseudogene PROSP contiguous on chr.3	Thrombophilia due to protein S deficiency, autosomal dominant, 612336 (3), Autosomal dominant; Thrombophilia due to protein S deficiency, autosomal recessive, 614514 (3), Autosomal recessive	Pros1 (MGI:1095733)
chr3	93980138	94055677	3q11.2	3q11.1-q11.2	608922	ARL13B, ARL2L1, JBTS8	ADP-ribosylation factor-like 13B	ARL13B	200894	ENSG00000169379		Joubert syndrome 8, 612291 (3), Autosomal recessive	Arl13b (MGI:1915396)
chr3	94000000	108200000	3q11.2-q13.12		114200	CAMPD1	Camptodactyly 1		100381210		between D3S2465 and D3S3044	Camptodactyly 1, 114200 (2), Autosomal dominant	
chr3	94057921	94063388	3q11.2	3q11.2	616588	DHFRL1	Dihydrofolate reductase-like 1	DHFR2	200895	ENSG00000178700			
chr3	94062904	94131831	3q11.2	3q11.2	617491	NSUN3	NOP2/SUN RNA methyltransferase family, member 3	NSUN3	63899	ENSG00000178694			Nsun3 (MGI:2146565)
chr3	96814580	97761531	3q11.2	3q11.2	600066	EPHA6, HEK12, EHK2	Ephrin receptor EphA6	EPHA6	285220	ENSG00000080224			Epha6 (MGI:108034)
chr3	97762580	97812584	3p12-q13	3q11.2	608845	ARL6, BBS3, RP55	ADP-ribosylation factor-like 6	ARL6	84100	ENSG00000113966	mutation identified in 1 RPS55 family	{Bardet-Biedl syndrome 1, modifier of}, 209900 (3), Autosomal recessive, Digenic recessive; Bardet-Biedl syndrome 3, 600151 (3), Autosomal recessive; ?Retinitis pigmentosa 55, 613575 (3)	Arl6 (MGI:1927136)
chr3	97941816	97972450	3q12.1	3q11.2	612049	MINA, MINA53, MDIG	MYC-induced nuclear antigen	RIOX2	84864	ENSG00000170854			Riox2 (MGI:1914264)
chr3	98531898	98534678	3q11.2-q13.1	3q11.2	601166	GPR15	G protein-coupled receptor-15	GPR15	2838	ENSG00000154165			Gpr15 (MGI:1918473)
chr3	98569836	98593683	3q12	3q11.2	612732	CPOX	Coproporphyrinogen oxidase	CPOX	1371	ENSG00000080819		Coproporphyria, 121300 (3), Autosomal dominant; Harderoporphyria, 121300 (3), Autosomal dominant	Cpox (MGI:104841)
chr3	98732235	98795844	3q12.1	3q12.1	607156	ST3GAL6, ST3GALVI	ST3 beta-galactoside alpha-2,3-sialyltransferase 6	ST3GAL6	10402	ENSG00000064225			St3gal6 (MGI:1888707)
chr3	98795969	98901691	3q12.1	3q12.1	608698	DCBLD2, ESDN	Discoidin, CUB, and LCCL domain-containing protein 2	DCBLD2	131566	ENSG00000057019			Dcbld2 (MGI:1920629)
chr3	99638595	99796732	3q12-q13.1	3q12.1	120251	COL8A1	Collagen VIII, alpha-1 polypeptide	COL8A1	1295	ENSG00000144810			Col8a1 (MGI:88463)
chr3	99833143	100114512	3q12.1	3q12.1	612993	FILIP1L	Filamin A-interacting protein 1-like	FILIP1L	11259	ENSG00000168386			Filip1l (MGI:1925999)
chr3	100185823	100194185	3q12	3q12.1	611030	TMEM30C, CDC50C	Transmembrane protein 30C	TMEM30CP	644444				
chr3	100260816	100325251	3q12.1-q12.2	3q12.1-q12.2	617687	TBC1D23, PCH11	TBC1 domain family, member 23	TBC1D23	55773	ENSG00000036054		Pontocerebellar hypoplasia, type 11, 617695 (3), Autosomal recessive	Tbc1d23 (MGI:1914831)
chr3	100334717	100355633	3q12.2	3q12.2	616769	NIT2	Nitrilase family member 2	NIT2	56954	ENSG00000114021			Nit2 (MGI:1261838)
chr3	100363458	100401397	3q12.2	3q12.2	606081	TOMM70A	Translocase of outer mitochondrial membrane 70, yeast, homolog of, A	TOMM70	9868	ENSG00000154174			Tomm70a (MGI:106295)
chr3	100492618	100577452	3q12.2	3q12.2	616928	TMEM45A, DERP7, DNAPTP4	Transmembrane protein 45A	TMEM45A	55076	ENSG00000181458			Tmem45a (MGI:1913122)
chr3	100609588	100696173	3q12.2	3q12.2	612307	ADGRG7, GPR128	Adhesion G protein-coupled receptor G7	ADGRG7	84873	ENSG00000144820			Adgrg7 (MGI:2441732)
chr3	100709289	100748966	3q11-q12	3q12.2	602498	TFG, HMSNP, SPG57	TRK-fused gene	TFG	10342	ENSG00000114354	fused with NR4A3 or NTRK1; mutation identified in 1 SPG57 family	Hereditary motor and sensory neuropathy, Okinawa type, 604484 (3), Autosomal dominant; ?Spastic paraplegia 57, autosomal recessive, 615658 (3), Autosomal recessive	Tfg (MGI:1338041)
chr3	100749328	100993507	3q12	3q12.2	606279	TARSH	Target of Nesh-SH3	ABI3BP	25890	ENSG00000154175			
chr3	101222545	101320574	3q11.2	3q12.3	607056	IMPG2, IPM200, RP56, VMD5	Interphotoreceptor matrix proteoglycan 2	IMPG2	50939	ENSG00000081148		Macular dystrophy, vitelliform, 5, 616152 (3), Autosomal dominant; Retinitis pigmentosa 56, 613581 (3), Autosomal recessive	Impg2 (MGI:3044955)
chr3	101324188	101513882	3q12.3	3q12.3	612846	SENP7, KIAA1707	Sentrin-specific protease family, member 7	SENP7	57337	ENSG00000138468			Senp7 (MGI:1913565)
chr3	101561835	101566445	3q12.3	3q12.3	615423	TRMT10C, RG9MTD1, MRPP1, COXPD30	tRNA methyltransferase 10, S. cerevisiae, homolog of, C	TRMT10C	54931	ENSG00000174173		Combined oxidative phosphorylation deficiency 30, 616974 (3), Autosomal recessive	Trmt10c (MGI:1196261)
chr3	101574093	101594464	3q12.3	3q12.3	615210	PCNP	PEST-containing nuclear protein	PCNP	57092	ENSG00000081154			Pcnp (MGI:1923552)
chr3	101681089	101686718	3q	3q12.3	604180	RPL24	Ribosomal protein L24	RPL24	6152	ENSG00000114391			Rpl24 (MGI:1915443)
chr3	101723930	101770561	3q12.2	3q12.3	615864	CEP97	Centrosomal protein, 97kD	CEP97	79598	ENSG00000182504			Cep97 (MGI:1921451)
chr3	101827989	101861024	3q13.11	3q12.3	608004	NFKBIZ, INAP, MAIL, IKBZ	Nuclear factor of kappa light chain gene enhancer in B cells inhibitor, zeta	NFKBIZ	64332	ENSG00000144802			Nfkbiz (MGI:1931595)
chr3	102385143	102479840	3q12.3	3q12.3	615915	ZPLD1	Zona pellucida-like domain-containing protein 1	ZPLD1	131368	ENSG00000170044			Zpld1 (MGI:2443415)
chr3	103100000	111600000	3q13.1		600467	MHS4	Malignant hyperthermia susceptibility 4	MHS4	4265			{Malignant hyperthermia susceptibility 4}, 600467 (2), Autosomal dominant	
chr3	105366712	105576912	3q13.1-q13.2	3q13.11	601662	ALCAM	Activated leukocyte cell adhesion molecule	ALCAM	214	ENSG00000170017			Alcam (MGI:1313266)
chr3	105655460	105869551	3q13.11	3q13.11	604491	CBLB	CAS-BR-M murine ecotropic retroviral transforming sequence B	CBLB	868	ENSG00000114423			Cblb (MGI:2146430)
chr3	107240691	107326963	3q13.12	3q13.12	616619	DUBR, DUM, LINC0883	DPPA2 upstream-binding RNA, noncoding	DUBR	344595				
chr3	108043093	108094199	3q13.1-q13.2	3q13.12	601028	CD47, MER6, IAP	CD47 antigen (Rh-related antigen; integrin-associated protein)	CD47	961	ENSG00000196776			Cd47 (MGI:96617)
chr3	108160811	108222569	3p12-q13	3q13.12-q13.13	606621	IFT57, ESRRBL1, HIPPI, OFD18	Intraflagellar transport 57, chlamydomonas, homolog of (HIP1 protein interactor)	IFT57	55081	ENSG00000114446	mutation identified in 1 OFD18 family	?Orofaciodigital syndrome XVIII, 617927 (3), Autosomal recessive	Ift57 (MGI:1921166)
chr3	108296489	108378284	3q13.13	3q13.13	604371	HHLA2	Human endogenous retrovirus-H long terminal repeat-associating 2	HHLA2	11148	ENSG00000114455			
chr3	108380368	108549461	3q13.13	3q13.13	609929	MYH15	Myosin, heavy chain 15	MYH15	22989	ENSG00000144821			Myh15 (MGI:3643515)
chr3	108545751	108589643	3q13.13	3q13.13	610643	KIAA1524, p90	KIAA1524 gene	CIP2A	57650	ENSG00000163507			C330027C09Rik (MGI:2146335)
chr3	108589489	108694845	3q13.13	3q13.13	608672	DZIP3, KIAA0675	DAZ-interacting zinc finger protein 3	DZIP3	9666	ENSG00000198919			Dzip3 (MGI:1917433)
chr3	108755638	108757282	3q13.13	3q13.13	605645	RETNLB, RELMB, FIZZ2	Resistin-like protein, beta	RETNLB	84666	ENSG00000163515			Retnlb (MGI:1888505)
chr3	108822697	108855004	3q13	3q13.13	604962	TRAT1, TRIM	T-cell receptor-associated transmembrane adaptor 1	TRAT1	50852	ENSG00000163519			Trat1 (MGI:1924897)
chr3	108907643	108955194	3q13.1	3q13.13	605128	GUCA1C, GCAP3	Guanylate cyclase activator 1C	GUCA1C	9626	ENSG00000138472			
chr3	108958238	109118145	3q13	3q13.13	603205	MORC1	MORC family CW-type zinc finger 1 (microrchidia, mouse, homolog of)	MORC1	27136	ENSG00000114487			Morc1 (MGI:1316740)
chr3	109293787	109316588	3q13.13	3q13.13	614445	DPPA2, PESCRG1, ECAT15-2	Developmental pluripotency-associated gene 2	DPPA2	151871	ENSG00000163530			Dppa2 (MGI:2157523)
chr3	109326140	109339634	3q13.13	3q13.13	614125	DPPA4	Developmental pluripotency-associated gene 4	DPPA4	55211	ENSG00000121570			Dppa4 (MGI:2157525)
chr3	111071758	111201443	3q13	3q13.13	607147	NECTIN3, PVRL3, PRR3	Nectin 3	NECTIN3	25945	ENSG00000177707			Nectin3 (MGI:1930171)
chr3	111542078	111665995	3q13.13	3q13.1-q13.2	606037	CD96, TACTILE	CD96 antigen	CD96	10225	ENSG00000153283		C syndrome, 211750 (3), Autosomal dominant	Cd96 (MGI:1934368)
chr3	111592899	111595334	3q13.2	3q13.13	615246	ZBED2	Zinc finger BED domain-containing protein 2	ZBED2	79413	ENSG00000177494			
chr3	111600000	122200000	3q13.2-q13.33		614655	STUT3	Stuttering, familial persistent, 3		100909386		max lod at D3S1310	Stuttering, familial persistent, 3, 614655 (2)	
chr3	111674675	111846446	3q13.2	3q13.2	617015	PLCXD1	Phospholipase C, phosphatidylinositol-specific, X domain-containing protein 2	PLCXD2	257068	ENSG00000240891			Plcxd2 (MGI:3647874)
chr3	111732479	111976516	3q13.2	3q13.2	610298	PHLDB2	Pleckstrin homology-like domain, family B, member 2	PHLDB2	90102	ENSG00000144824			Phldb2 (MGI:2444981)
chr3	111998738	112013887	3q13.2	3q13.2	607953	TAGLN3, NP24, NP22	Transgelin 3	TAGLN3	29114	ENSG00000144834			Tagln3 (MGI:1926784)
chr3	112086334	112136378	3q13.2	3q13.2	611956	C3orf52, TTMP	Chromosome 3 open reading frame 52	C3orf52	79669	ENSG00000114529			BC016579 (MGI:2384848)
chr3	112120840	112133955	3q13	3q13.2	607792	GCET2, HGAL	Germinal center-expressed transcript 2	GCSAM	257144	ENSG00000174500			Gcsam (MGI:102969)
chr3	112140897	112294257	3q13.2	3q13.2	612738	SLC9A10	Solute carrier family 9, member 10	SLC9C1	285335	ENSG00000172139			Slc9c1 (MGI:2685456)
chr3	112332223	112362811	3q12-q13	3q13.2	155970	MOX2	MRC OX-2 antigen	CD200	4345	ENSG00000091972			Cd200 (MGI:1196990)
chr3	112463029	112499756	3q13.2	3q13.2	607925	BTLA	B- and T-lymphocyte attenuator	BTLA	151888	ENSG00000186265			Btla (MGI:2658978)
chr3	112604385	112641142	3q13.2	3q13.2	608298	URB, SSG1	Urb, mouse, homolog of	CCDC80	151887	ENSG00000091986			Ccdc80 (MGI:1915146)
chr3	112922684	112975089	3q13.1	3q13.2	607546	CD200R1, MOX2R, OX2R	CD200 receptor 1	CD200R1	131450	ENSG00000163606			Cd200r1 (MGI:1889024)
chr3	113002443	113019732	3q13.2	3q13.2	617089	NEPRO, C3orf17	Nucleolus and neural progenitor protein	NEPRO	25871	ENSG00000163608			Nepro (MGI:2384836)
chr3	113286929	113441513	3q13.2	3q13.2	617559	CFAP44, WDR52, SPGF20	Cilia- and flagella-associated protein 44	CFAP44	55779	ENSG00000206530	mutation identified in 1 SPGF20 patient	?Spermatogenic failure 20, 617593 (3), Autosomal recessive	Cfap44 (MGI:1277238)
chr3	113442717	113515186	3q13.2	3q13.2	613447	SPICE1, CCDC52	Spindle- and centriole-associated protein 1	SPICE1	152185	ENSG00000163611			Spice1 (MGI:1196252)
chr3	113648384	113696656	3q13.2	3q13.2	617568	USF3	Upstream transcription factor family, member 3	USF3	205717	ENSG00000176542			Usf3 (MGI:2685454)
chr3	113700000	117600000	3q13.31		615433	DEL3q13.31, C13DELq13.31	Chromosome 3q13.31 deletion syndrome					Chromosome 3q13.31 deletion syndrome, 615433 (4), Autosomal dominant	
chr3	113716459	113746298	3q13.2	3q13.31	610834	NAT13, NAT5, SAN	N-acetyltransferase 13	NAA50	80218	ENSG00000121579			Naa50 (MGI:1919367)
chr3	113747018	113812057	3p13	3q13.31	607027	ATP6V1A1, HO68, ARCL2D	ATPase, H+ transporting, lysosomal alpha polypeptide, 70-kD, isoform 1	ATP6V1A	523	ENSG00000114573		Cutis laxa, autosomal recessive, type IID, 617403 (3), Autosomal recessive	Atp6v1a (MGI:1201780)
chr3	113947900	113998001	3q13.31	3q13.31	617334	ZDHHC23, NIDD	Zinc finger DHHC-type containing 23	ZDHHC23	254887	ENSG00000184307			Zdhhc23 (MGI:2685625)
chr3	114127622	114199406	3q13.3	3q13.31	126451	DRD3, ETM1, FET1	Dopamine receptor D3	DRD3	1814	ENSG00000151577		{Essential tremor, hereditary, 1}, 190300 (3), Autosomal dominant; {Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant	Drd3 (MGI:94925)
chr3	114234630	114237577	3p12-qter	3q13.31	194553	ZNF80	Zinc finger protein-80 (pT17)	ZNF80	7634	ENSG00000174255			
chr3	114291101	114329746	3q13.3	3q13.31	612859	TIGIT	T-cell immunoreceptor with immunoglobulin and ITIM domains	TIGIT	201633	ENSG00000181847			Tigit (MGI:3642260)
chr3	114314499	115147279	3q13.2	3q13.31	606025	ZBTB20, ZNF288, DPZF, PRIMS	Zinc finger and BTB-domain containing 20	ZBTB20	26137	ENSG00000181722		Primrose syndrome, 259050 (3), Autosomal dominant	Zbtb20 (MGI:1929213)
chr3	115623303	115721486	3q13	3q13.31	162060	GAP43	Neuron growth-associated protein 43	GAP43	2596	ENSG00000172020			Gap43 (MGI:95639)
chr3	115802362	116445537	3q13.2-q21	3q13.31	603241	LSAMP, LAMP	Limbic system-associated membrane protein	LSAMP	4045	ENSG00000185565			Lsamp (MGI:1261760)
chr3	116709787	116717039	3q13.31	3q13.31	616057	TUSC7, LSAMPAS3, LOC285194	Tumor suppressor candidate 7, noncoding	TUSC7	285194				
chr3	119173577	119205152	3q13.3-q21	3q13.32	602380	UPK1B	Uroplakin 1B	UPK1B	7348	ENSG00000114638			Upk1b (MGI:98912)
chr3	119211741	119240906	3q13.3	3q13.32	604015	B4GALT4	Beta-1,4-galactosyltransferase 4	B4GALT4	8702	ENSG00000121578			B4galt4 (MGI:1928387)
chr3	119294288	119419475	3q13.3	3q13.32-q13.33	610911	ARHGAP31, CDGAP, KIAA1204, AOS1	Rho GTPase-activating protein 31	ARHGAP31	57514	ENSG00000031081		Adams-Oliver syndrome 1, 100300 (3), Autosomal dominant	Arhgap31 (MGI:1333857)
chr3	119468937	119494707	3q13.33	3q13.33	615618	POGLUT1, CLP46, KTELC1, RUMI, C3orf9, DDD4, LGMD2Z	Protein O-glucosyltransferase 1	POGLUT1	56983	ENSG00000163389	mutation identified in 1 LGMD2Z family	Dowling-Degos disease 4, 615696 (3), Autosomal dominant; ?Muscular dystrophy, limb-girdle, type 2Z, 617232 (3), Autosomal recessive	Poglut1 (MGI:2444232)
chr3	119498520	119524280	3q13.33	3q13.33	615534	TIMMDC1, C3orf1	Translocase of inner mitochondrial membrane domain-containing protein 1	TIMMDC1	51300	ENSG00000113845		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Timmdc1 (MGI:1922139)
chr3	119523908	119559633	3q21	3q13.33	112203	CD80, CD28LG, LAB7	CD80 antigen (CD28 antigen ligand 1, B7-1 antigen)	CD80	941	ENSG00000121594			Cd80 (MGI:101775)
chr3	119579432	119589953	3q13.33	3q13.33	603081	ADPRH	ADP-ribosylarginine hydrolase	ADPRH	141	ENSG00000144843			Adprh (MGI:1098234)
chr3	119597847	119629810	3q13.2-q13.3	3q13.33	607460	PLA1A, PSPLA1	Phosphatidylserine-specific phospholipase A1-alpha	PLA1A	51365	ENSG00000144837			Pla1a (MGI:1934677)
chr3	119642051	119660589	3q13.3	3q13.33	605823	POPDC2, POP2	Popeye domain-containing protein 2	POPDC2	64091	ENSG00000121577			Popdc2 (MGI:1930150)
chr3	119669524	119677395	3q	3q13.33	604813	COX17	Cytochrome c oxidase assembly protein COX17	COX17	10063	ENSG00000138495	pseudogene on chr. 13?		Cox17 (MGI:1333806)
chr3	119703021	119767101	3q13.3-q21.1	3q13.33	609910	MAATS1, AAT1, C3orf15	MYCBP-associated testis-expressed protein 1	MAATS1	89876	ENSG00000183833			Maats1 (MGI:2443598)
chr3	119780483	119818484	3q13-q21	3q13.33	603065	NR1I2, PXR, SXR, PARq	Nuclear receptor subfamily 1, group I, member 2	NR1I2	8856	ENSG00000144852			Nr1i2 (MGI:1337040)
chr3	119821320	120095822	3q13.3	3q13.33	605004	GSK3B	Glycogen synthase kinase 3-beta	GSK3B	2932	ENSG00000082701			Gsk3b (MGI:1861437)
chr3	120165480	120285073	3q13.33	3q13.33	610464	GPR156, GABABL	G protein-coupled receptor 156	GPR156	165829	ENSG00000175697			Gpr156 (MGI:2653880)
chr3	120394213	120451070	3q13.3	3q13.33	605547	FSTL1, FRP, MIR198	Follistatin-like 1	FSTL1	11167	ENSG00000163430	FSTL1 mRNA can encode a protein or produce an micoRNA		Fstl1 (MGI:102793)
chr3	120596280	120602410	3q13.33	3q13.33	603840	NDUFB4	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 4	NDUFB4	4710	ENSG00000065518			Gm3244,Gm3873,Ndufb4 (MGI:3781422,MGI:3782046,MGI:1915444)
chr3	120628167	120682570	3q13.33	3q13.33	607474	HGD, AKU	Homogentisate 1,2-dioxygenase (homogentisate oxidase)	HGD	3081	ENSG00000113924		Alkaptonuria, 203500 (3), Autosomal recessive	Hgd (MGI:96078)
chr3	120742710	120783133	3q13.33	3q13.33	189962	GTF2E1, TF2E1	General transcription factor IIE, polypeptide 1	GTF2E1	2960	ENSG00000153767			Gtf2e1 (MGI:1921447)
chr3	120908202	121424760	3q13.3	3q13.33	609381	STXBP5L, LLGL4	Syntaxin-binding protein 5-like	STXBP5L	9515	ENSG00000145087			Stxbp5l (MGI:2443815)
chr3	121431419	121546005	3q13.3	3q13.33	604419	POLQ	Polymerase, DNA, theta	POLQ	10721	ENSG00000051341			Polq (MGI:2155399)
chr3	121567930	121590621	3q13.3	3q13.33	611164	ARGFX	Arginine-fifty homeobox	ARGFX	503582	ENSG00000186103	pseudogenes on 5q23.2 and 17q11.2		
chr3	121593322	121630291	3q21.1	3q13.33	609107	FBXO40, FBX40, KIAA1195	F-box only protein 40	FBXO40	51725	ENSG00000163833			Fbxo40 (MGI:2443753)
chr3	121631397	121660947	3q13	3q13.33	601306	HCLS1	Hematopoietic cell-specific Lyn substrate 1	HCLS1	3059	ENSG00000180353			Hcls1 (MGI:104568)
chr3	121663198	121751168	3q13	3q13.33	602500	GOLGB1, GCP372	Golgi autoantigen, golgin subfamily B, 1	GOLGB1	2804	ENSG00000173230			Golgb1 (MGI:1099447)
chr3	121769760	121835078	3q13.33	3q13.33	609237	IQCB1, NPHP5, KIAA0036	IQ motif-containing protein B1	IQCB1	9657	ENSG00000173226		Senior-Loken syndrome 5, 609254 (3), Autosomal recessive	Iqcb1 (MGI:2443764)
chr3	121835179	121886525	3q13.33	3q13.33	607659	EAF2	ELL-associated factor 2	EAF2	55840	ENSG00000145088			Eaf2 (MGI:2146616)
chr3	121894323	121944186	3q13.33	3q13.33	602339	SLC15A2, PEPT2	Solute carrier family 15 (H+/peptide transporter), member 2	SLC15A2	6565	ENSG00000163406			Slc15a2 (MGI:1890457)
chr3	121987322	122060553	3q21.1	3q13.33	609739	ILDR1, DFNB42	Immunoglobulin-like domain-containing receptor 1	ILDR1	286676	ENSG00000145103		Deafness, autosomal recessive 42, 609646 (3), Autosomal recessive	Ildr1 (MGI:2146574)
chr3	122055361	122121142	3q21	3q13.33	601020	CD86, CD28LG2, LAB72	CD86 antigen (CD28 antigen ligand 2, B7-2 antigen)	CD86	942	ENSG00000114013			Cd86 (MGI:101773)
chr3	122183682	122286502	3q21.1	3q13.3-q21.1	601199	CASR, HHC1, PCAR1, FIH, EIG8, HYPOC1	Calcium-sensing receptor	CASR	846	ENSG00000036828	15cM from RHO	{Calcium, serum level of} (3); {Epilepsy idiopathic generalized, susceptibility to, 8}, 612899 (3); Hypercalciuric hypercalcemia (3); Hyperparathyroidism, neonatal, 239200 (3), Autosomal recessive, Autosomal dominant; Hypocalcemia, autosomal dominant, 601198 (3), Autosomal dominant; Hypocalcemia, autosomal dominant, with Bartter syndrome, 601198 (3), Autosomal dominant; Hypocalciuric hypercalcemia, type I, 145980 (3), Autosomal dominant	Casr (MGI:1351351)
chr3	122200000	129500000	3q21		603165	ATOD1	Dermatitis, atopic, 1		64069		max lod at D3S3606	{Dermatitis, atopic, susceptibility to, 1}, 603165 (2), Autosomal dominant	
chr3	122200000	155300000	3q21-q25.2		614011	ERVK-4, HERV-KI	Endogenous retrovirus group K, member 4	ERVK-4	60359				
chr3	122200000	129500000	3q21		613460	FGQTL6, BWQTL3, PGQTL1	Fasting plasma glucose level QTL 6; Birth weight QTL 3; Plasma glucose, 2-hour, QTL 1		100499168		associated with rs11708067 and rs11708067	[Birth weight QTL 3], 613460 (2); [Fasting plasma glucose level QTL 6], 613460 (2); [Plasma glucose, 2-hour, QTL 1], 613460 (2)	
chr3	122200000	149200000	3q21-q24		601682	GLC1C	Glaucoma 1, open angle, C	GLC1C	2723			Glaucoma 1C, primary open angle, 601682 (2), Autosomal dominant	
chr3	122200000	139000000	3q21-q22		601471	HCFP1, MBS2	Facial paresis, hereditary congenital, 1	MBS2	7880			Facial paresis, hereditary congenital, 1, 601471 (2), Autosomal dominant	
chr3	122200000	129500000	3q21		604316	PSORS5	Psoriasis susceptibility 5	PSORS5	63870			{Psoriasis susceptibility 5}, 604316 (2)	
chr3	122325163	122341968	3q21	3q21.1	184600	CSTA, STFA, STF1, AREI, PSS4	Cystatin A (stefin A)	CSTA	1475	ENSG00000121552		Peeling skin syndrome 4, 607936 (3), Autosomal recessive	Gm5483,2010005H15Rik,Csta1 (MGI:3524930,MGI:1924020,MGI:3645124)
chr3	122384175	122410113	3q21.1	3q21.1	608017	C3orf28, E2IG5	E2-induced gene 5	FAM162A	26355	ENSG00000114023			Fam162a (MGI:1917436)
chr3	122421900	122514938	3q21	3q21.1	600686	KPNA1, RCH2, SRP1	Karyopherin, alpha-1	KPNA1	3836	ENSG00000114030			Kpna1 (MGI:103560)
chr3	122527909	122564675	3q21	3q21.1	612065	PARP9, BAL1, BAL	Poly(ADP-ribose) polymerase 9	PARP9	83666	ENSG00000138496			Parp9 (MGI:1933117)
chr3	122564337	122575202	3q21	3q21.1	613143	DTX3L, BBAP	DTX3-like	DTX3L	151636	ENSG00000163840	head-to-head with PARP9		Dtx3l (MGI:2656973)
chr3	122575925	122639046	3q21	3q21.1	612066	PARP15, BAL3	Poly(ADP-ribose) polymerase 15	PARP15	165631	ENSG00000173200			
chr3	122680725	122730839	3q21.1	3q21.1	610028	PARP14, KIAA1268	Poly(ADP-ribose) polymerase 14	PARP14	54625	ENSG00000173193			Parp14 (MGI:1919489)
chr3	122795053	122892156	3q21	3q21.1	602773	DIRC2, RCC4	Disrupted in renal carcinoma 2	DIRC2	84925	ENSG00000138463	t(2;3)(q35;q21) in renal cell carcinoma	Renal cell carcinoma, 144700 (1)	Dirc2 (MGI:2387188)
chr3	123067008	123162105	3q21.1	3q21.1	616942	PDIA5, PDIR	Protein disulfide isomerase, family A, member 5	PDIA5	10954	ENSG00000065485			Pdia5 (MGI:1919849)
chr3	123201926	123274135	3q21.1	3q21.1	612442	SEC22A, SEC22L2	Secretion deficient 22, S. cerevisiae, homolog of, A	SEC22A	26984	ENSG00000121542			Sec22a (MGI:2447876)
chr3	123282295	123448987	3q13.2-q21	3q21.1	600293	ADCY5, FDFM	Adenylate cyclase-5	ADCY5	111	ENSG00000173175		Dyskinesia, familial, with facial myokymia, 606703 (3), Autosomal dominant	Adcy5 (MGI:99673)
chr3	123491547	123585184	3q21.1	3q21.1	615939	PTPLB, HACD2	Protein tyrosine phosphatase-like (proline instead of catalytic arginine), member B	HACD2	201562	ENSG00000206527			Hacd2 (MGI:1918007)
chr3	123612295	123884301	3q21	3q21.1	600922	MYLK, MLCK, AAT7	Myosin-light-polypeptide kinase	MYLK	4638	ENSG00000065534	pseudogene on 3p13	Aortic aneurysm, familial thoracic 7, 613780 (3), Autosomal dominant	Mylk (MGI:894806)
chr3	123887382	123961411	3q21.1	3q21.1	617147	CCDC14	Coiled-coil domain-containing protein 14	CCDC14	64770	ENSG00000175455			Ccdc14 (MGI:2443448)
chr3	123969005	123992169	3q21.1	3q21.1	611757	ROPN1, ODF6	Rhophilin-associated tail protein 1	ROPN1	54763	ENSG00000065371			Ropn1 (MGI:1923628)
chr3	124033340	124726324	3q13	3q21.1-q21.2	604605	KALRN, HAPIP, DUO, CHDS5	Kalirin	KALRN	8997	ENSG00000160145		{Coronary heart disease, susceptibility to, 5}, 608901 (3)	Kalrn (MGI:2685385)
chr3	124730365	124749272	3q13	3q21.2	613891	UMPS, OPRT	Uridine monophosphate synthetase (orotate phosphoribosyl transferase and orotidine-5'-decarboxylase)	UMPS	7372	ENSG00000114491		Orotic aciduria, 258900 (3), Autosomal recessive	Umps (MGI:1298388)
chr3	124761947	124901410	3q21.2	3q21.2	147561	ITGB5	Integrin, beta-5	ITGB5	3693	ENSG00000082781			Itgb5 (MGI:96614)
chr3	124905441	124934750	3q13.3	3q21.2	612181	MUC13	Mucin 13, cell surface-associated	MUC13	56667	ENSG00000173702			Muc13 (MGI:103190)
chr3	124965709	125055957	3q21.2	3q21.2	614182	HEG1, KIAA1237	Heart of glass, zebrafish, homolog of, 1	HEG1	57493	ENSG00000173706			Heg1 (MGI:1924696)
chr3	125225668	125375353	3q21	3q21.2	601897	ZNF148, ZFP148, GDACCF	Zinc finger protein-148	ZNF148	7707	ENSG00000163848		Global developmental delay, absent or hypoplastic corpus callosum, and dysmorphic facies, 617260 (3), Autosomal dominant	Zfp148 (MGI:1332234)
chr3	125446643	125520213	3q21.2	3q21.2	605931	SNX4	Sorting nexin 4	SNX4	8723	ENSG00000114520			Snx4 (MGI:1916400)
chr3	125528857	125595536	3q21.1	3q21.2	606739	OSBPL11, ORP11	Oxysterol-binding protein-like protein 11	OSBPL11	114885	ENSG00000144909	previously assigned to chr.8		Osbpl11 (MGI:2146553)
chr3	126006356	126101549	3q21.2	3q21.2-q21.3	610803	SLC41A3	Solute carrier family 41, member 3	SLC41A3	54946	ENSG00000114544			Slc41a3 (MGI:1918949)
chr3	126103560	126197757	3q21.3	3q21.3	600249	ALDH1L1, FTHFD	Aldehyde dehydrogenase 1 family, member L1	ALDH1L1	10840	ENSG00000144908			Aldh1l1 (MGI:1340024)
chr3	126288120	126357392	3q21-q22	3q21.3	606465	KLF15, KKLF	Kruppel-like factor 15	KLF15	28999	ENSG00000163884			Klf15 (MGI:1929988)
chr3	126437347	126475937	3q21.3	3q21.3	615746	ZXDC	ZCD family zinc finger protein C	ZXDC	79364	ENSG00000070476			Zxdc (MGI:1933108)
chr3	126481164	126517772	3q21.3	3q21.3	613012	UROC1, UROCD	Urocanase domain-containing protein 1	UROC1	131669	ENSG00000159650	mutation identified in 1 UROCD patient	?Urocanase deficiency, 276880 (3), Autosomal recessive	Uroc1 (MGI:2385332)
chr3	126524287	126543290	3p21.3	3q21.3	610124	CHST13, C4ST3	Carbohydrate sulfotransferase 13	CHST13	166012	ENSG00000180767			Chst13 (MGI:1919047)
chr3	126607051	126655123	3q21	3q21.3	606235	TXNRD3, TRXR3, TR2	Thioredoxin reductase 3	TXNRD3	114112	ENSG00000197763			Txnrd3 (MGI:2386711)
chr3	126704219	126960419	3q21.3	3q21.3	615634	CHCHD6, CHCM1	Coiled-coil-helix-coiled-coil-helix domain-containing protein 6	CHCHD6	84303	ENSG00000159685			Chchd6 (MGI:1913348)
chr3	126983258	127037391	3q21-qter	3q21.3	601055	PLXNA1, NOVP, NOV, PLXN1	Plexin A1 (NOV transmembrane protein)	PLXNA1	5361	ENSG00000114554			Plxna1 (MGI:107685)
chr3	127598356	127622435	3q21	3q21.3	116945	MCM2, CDCL1, DFNA70	Minichromosome maintenance deficient, S. cerevisiae, 2, homolog of (mitotin)	MCM2	4171	ENSG00000073111	mutation identified in 1 DFNA70 family	?Deafness, autosomal dominant 70, 616968 (3), Autosomal dominant	Mcm2 (MGI:105380)
chr3	127629158	127672809	3q21.3	3q21.3	616627	PODXL2, EG	Podocalyxin-like 2	PODXL2	50512	ENSG00000114631			Podxl2 (MGI:2442488)
chr3	127672927	127680925	3q21	3q21.3	608308	ABTB1, BPOZ	Ankyrin repeat and BTB/POZ domain containing 1	ABTB1	80325	ENSG00000114626			Abtb1 (MGI:1933148)
chr3	127689061	127823249	3p21.3	3q21.3	609699	MGLL, MGL, HUK5	Monoglyceride lipase	MGLL	11343	ENSG00000074416			Mgll (MGI:1346042)
chr3	128052368	128071682	3q21.3	3q21.3	609213	SEC61A1, SEC61, HNFJ4	Sec61 complex, alpha-1 subunit	SEC61A1	29927	ENSG00000058262		Hyperuricemic nephropathy, familial juvenile, 4, 617056 (3), Autosomal dominant	Sec61a1 (MGI:1858417)
chr3	128064610	128153913	3q21	3q21.3	603449	RUVBL1, NMP238, TIP49	RUVB, E. coli, homolog-like 1	RUVBL1	8607	ENSG00000175792			Ruvbl1 (MGI:1928760)
chr3	128153452	128426192	3q21.3	3q21.3	607695	EEFSEC, SELB, EFSEC	Eukaryotic elongation factor, selenocysteine-tRNA-specific	EEFSEC	60678	ENSG00000132394			Eefsec (MGI:2137092)
chr3	128462431	128467247	3q21.3	3q21.3	611337	DNAJB8, DJ6	DNAJ/HSP40 homolog, subfamily B, member 8	DNAJB8	165721	ENSG00000179407			Dnajb8 (MGI:1922801)
chr3	128479421	128493186	3q21	3q21.3	137295	GATA2, DCML, MONOMAC, IMD21	GATA-binding protein-2	GATA2	2624	ENSG00000179348		Emberger syndrome, 614038 (3), Autosomal dominant; Immunodeficiency 21, 614172 (3), Autosomal dominant; {Leukemia, acute myeloid, susceptibility to}, 601626 (3), Autosomal dominant; {Myelodysplastic syndrome, susceptibility to}, 614286 (3)	Gata2 (MGI:95662)
chr3	128619969	128650875	3q	3q21.3	180470	RPN1	Ribophorin I	RPN1	6184	ENSG00000163902			Rpn1 (MGI:98084)
chr3	128726135	128814797	3q21	3q21.3	602298	RAB7, CMT2B, PSN	Ras-associated protein RAB7	RAB7A	7879	ENSG00000075785		Charcot-Marie-Tooth disease, type 2B, 600882 (3), Autosomal dominant	Rab7 (MGI:105068)
chr3	128879489	128913113	3q26	3q21.3	611103	ACAD9	Acyl-CoA dehydrogenase family, member 9	ACAD9	28976	ENSG00000177646		Mitochondrial complex I deficiency due to ACAD9 deficiency, 611126 (3), Autosomal recessive	Acad9 (MGI:1914272)
chr3	129055448	129062410	3q21	3q21.3	173515	GP9	Glycoprotein IX, platelet	GP9	2815	ENSG00000169704		Bernard-Soulier syndrome, type C, 231200 (3), Autosomal recessive	Gp9 (MGI:1860137)
chr3	129127415	129161229	3q21.3	3q21.3	612764	ISY1, KIAA1160	ISY1 splicing factor, S. cerevisiae, homolog of	ISY1	57461	ENSG00000240682			
chr3	129167814	129183966	3q13.3-q24	3q21.3	116955	ZNF9, CNBP1, DM2, PROMM	Zinc finger protein-9 (a cellular retroviral nucleic acid-binding protein)	CNBP	7555	ENSG00000169714		Myotonic dystrophy 2, 602668 (3), Autosomal dominant	Cnbp (MGI:88431)
chr3	129249574	129277772	3q21.3	3q21.3	615525	COPG1	Coatomer protein complex, subunit gamma-1	COPG1	22820	ENSG00000181789			Copg1 (MGI:1858696)
chr3	129314770	129316276	3q21.3	3q21.3	602785	H1FX, H1X	H1 histone family, member X	H1FX	8971	ENSG00000184897			H1fx (MGI:2685307)
chr3	129430943	129440178	3q21-q22	3q21.3	603574	MBD4, MED1	Methyl-CpG-binding domain protein 4	MBD4	8930	ENSG00000129071			Mbd4 (MGI:1333850)
chr3	129440035	129520506	3q21	3q21.3-q22.1	606045	IFT122, WDR10, CED1	Intraflagellar transport 122, homolog of	IFT122	55764	ENSG00000163913		Cranioectodermal dysplasia 1, 218330 (3), Autosomal recessive	Ift122 (MGI:1932386)
chr3	129500000	149200000	3q22-q24		611155	AD15	Alzheimer disease 15		100188838		max lod at D3S1579	{Alzheimer disease-15}, 611155 (2)	
chr3	129500000	139000000	3q22		606012	DFNA18	Deafness, autosomal dominant 18	DFNA18	85507			Deafness, autosomal dominant 18, 606012 (2), Autosomal dominant	
chr3	129500000	149200000	3q22-q24		220200	DWS, C3DELq22q24, DEL3q22q24	Dandy-Walker syndrome	DWS	1858		ZIC1 and ZIC4 good candidate genes	Dandy-Walker syndrome, 220200 (4), Isolated cases	
chr3	129500000	149200000	3q22-q24		608787	OTSC5	Otosclerosis 5	OTSC5	317682		max lod at D3S1569	Otosclerosis 5, 608787 (2)	
chr3	129500000	161000000	3q22-q25		173865	PABPL1	Polyadenylate-binding protein-like 1						
chr3	129500000	139000000	3q22		616361	PARK21	Parkinson disease 21		108353827		conflicting mapping on 20pter-p12	Parkinson disease 21, 616361 (2), Autosomal dominant	
chr3	129500000	139000000	3q22		606995	SLSN3	Senior-Loken syndrome 3		260432		?allelic with NPHP3	Senior-Loken syndrome 3, 606995 (2), Autosomal recessive	
chr3	129528638	129535343	3q21-q24	3q22.1	180380	RHO, RP4, OPN2, CSNBAD1	Rhodopsin (opsin 2)	RHO	6010	ENSG00000163914		Night blindness, congenital stationary, autosomal dominant 1, 610445 (3); Retinitis pigmentosa 4, autosomal dominant or recessive, 613731 (3), Autosomal recessive, Autosomal dominant; Retinitis punctata albescens, 136880 (3), Autosomal recessive, Autosomal dominant	Rho (MGI:97914)
chr3	129555212	129606738	3q22	3q22.1	604282	PLXND1	Plexin D1	PLXND1	23129	ENSG00000004399			Plxnd1 (MGI:2154244)
chr3	129647791	129893602	3q22.1	3q22.1	616242	TMCC1, KIAA0779	Transmembrane and coiled-coil domain family 1	TMCC1	23023	ENSG00000172765			Tmcc1 (MGI:2442368)
chr3	129974392	129977937	3q13.3-q21	3q22.1	613879	TRH	Thyrotropin-releasing hormone	TRH	7200	ENSG00000170893		Thyrotropin-releasing hormone deficiency, 275120 (1), Autosomal recessive	Trh (MGI:98823)
chr3	130212819	130273805	3q21	3q22.1	616612	COL6A4P2	Collagen, type VI, alpha-4, pseudogene 2	COL6A4P2	646300				
chr3	130345515	130484845	3q21	3q22.1	611916	COL6A5, COL29A1	Collagen, type VI, alpha-5	COL6A5	256076	ENSG00000172752			Col6a5 (MGI:3648134)
chr3	130516708	130678136	3q21	3q22.1	616613	COL6A6	Collagen, type VI, alpha-6	COL6A6	131873	ENSG00000206384			Col6a6 (MGI:2444259)
chr3	130678933	130746851	3q22.1	3q22.1	602610	PIK3R4	Phosphatidylinositol 3-kinase, regulatory subunit 4	PIK3R4	30849	ENSG00000196455			Pik3r4 (MGI:1922919)
chr3	130850499	131016711	3q21-q24	3q22.1	604384	ATP2C1, BCPM, HHD	ATPase, Ca(2+)-sequestering	ATP2C1	27032	ENSG00000017260		Hailey-Hailey disease, 169600 (3), Autosomal dominant	Atp2c1 (MGI:1889008)
chr3	131026849	131350464	3q21-q22	3q22.1	609779	NEK11	Never in mitosis gene A-related kinase 11	NEK11	79858	ENSG00000114670			Nek11 (MGI:2442276)
chr3	131381670	131388829	3q22.1	3q22.1	617381	NUDT16	Nudix hydrolase 16	NUDT16	131870	ENSG00000198585			Nudt16 (MGI:1922936)
chr3	131462200	131503015	3q22.1	3q22.1	607118	MRPL3, MRL3, COXPD9	Mitochondrial ribosomal protein L3	MRPL3	11222	ENSG00000114686		Combined oxidative phosphorylation deficiency 9, 614582 (3), Autosomal recessive	Mrpl3 (MGI:2137204)
chr3	131533559	132285695	3q22.1	3q22.1	604208	CPNE4, CPN4	Copine IV	CPNE4	131034	ENSG00000196353			Cpne4 (MGI:1921270)
chr3	132317366	132368764	3q21-q23	3q22.1	171790	ACPP	Acid phosphatase, prostate	ACPP	55	ENSG00000014257			Acpp (MGI:1928480)
chr3	132417659	132539031	3q22.1	3q22.1	614334	DNAJC13, RME8, KIAA0678	DNAJ/HSP40 homolog, subfamily C, member 13	DNAJC13	23317	ENSG00000138246			Dnajc13 (MGI:2676368)
chr3	132558137	132660130	3q22.1	3q22.1	614288	ACAD11	Acyl-CoA dehydrogenase family, member 11	ACAD11	84129	ENSG00000240303			Acad11 (MGI:2143169)
chr3	132597236	132602643	3q22	3q22.1	606065	ACKR4, CCRL1, PPR1	Atypical chemokine receptor 4	ACKR4	51554	ENSG00000129048			Ackr4 (MGI:2181676)
chr3	132654445	132679785	3q22	3q22.1	610552	UBA5, UBE1DC1, EIEE44, SCAR24	Ubiquitin-like modifier activating enzyme 5	UBA5	79876	ENSG00000081307	mutation identified in 1 SCAR24 family	Epileptic encephalopathy, early infantile, 44, 617132 (3), Autosomal recessive; ?Spinocerebellar ataxia, autosomal recessive 24, 617133 (3), Autosomal recessive	Uba5 (MGI:1913913)
chr3	132680608	132722458	3q22	3q22.1	608002	NPHP3, NPH3, RHPD1, MKS7	Nephrocystin 3	NPHP3	27031	ENSG00000113971		Meckel syndrome 7, 267010 (3), Autosomal recessive; Nephronophthisis 3, 604387 (3), Autosomal recessive; Renal-hepatic-pancreatic dysplasia 1, 208540 (3), Autosomal recessive	Nphp3 (MGI:1921275)
chr3	133038287	133397774	3q22.1	3q22.1	617361	TMEM108, RTLN, KIAA1690	Transmembrane protein 108	TMEM108	66000	ENSG00000144868			Tmem108 (MGI:1932411)
chr3	133397881	133475211	3q21-q25	3q22.1	603212	BFSP2, CP49, CP47, CTRCT12	Beaded filament structural protein 2 (cytoskeletal protein, 49 kD)	BFSP2	8419	ENSG00000170819		Cataract 12, multiple types, 611597 (3), Autosomal dominant	Bfsp2 (MGI:1333828)
chr3	133600604	133661967	3q22.1	3q22.1	607760	TOPBP1, KIAA0259	DNA topoisomerase II-binding protein 1	TOPBP1	11073	ENSG00000163781			Topbp1 (MGI:1920018)
chr3	133661985	133779005	3q21	3q22.1	190000	TF, TFQTL1	Transferrin	TF	7018	ENSG00000091513		Atransferrinemia, 209300 (3), Autosomal recessive	Trf (MGI:98821)
chr3	133784032	133821491	3q22.1	3q22.1	616883	SRPRB, APMCF1	Signal recognition particle receptor, beta subunit	SRPRB	58477	ENSG00000144867			Srprb (MGI:102964)
chr3	133824234	133895846	3q22.1	3q22.1	615852	RAB6B	Ras-associated protein RAB6B	RAB6B	51560	ENSG00000154917			Rab6b (MGI:107283)
chr3	133932695	134030075	3q21	3q22.1-q22.2	601460	SLCO2A1, OATP2A1, PGT, SLC21A2, PHOAR2	Solute carrier organic anion transporter family, member 2A1	SLCO2A1	6578	ENSG00000174640		Hypertrophic osteoarthropathy, primary, autosomal recessive 2, 614441 (3), Autosomal recessive	Slco2a1 (MGI:1346021)
chr3	134157132	134250833	3q22.2	3q22.2	600524	RYK, RYK1	RYK receptor-like tyrosine kinase	RYK	6259	ENSG00000163785			Ryk (MGI:101766)
chr3	134355344	134375416	3q22.2	3q22.2	614658	AMOTL2, KIAA0989	Angiomotin-like 2	AMOTL2	51421	ENSG00000114019			Amotl2 (MGI:1929286)
chr3	134477703	134486022	3q22.2	3q22.2	614484	ANAPC13, APC13, SWM1	Anaphase-promoting complex, subunit 13	ANAPC13	25847	ENSG00000129055			Anapc13 (MGI:1916260)
chr3	134485723	134783168	3q22.2	3q22.2	614724	CEP63, SCKL6	Centrosomal protein, 63kD	CEP63	80254	ENSG00000182923	mutation identified in 1 family	?Seckel syndrome 6, 614728 (3), Autosomal recessive	Cep63 (MGI:2158560)
chr3	134595263	135260466	3q21-q23	3q22.2	600600	EPHB1, EPHT2, NET	eph tyrosine kinase 2 (ephrin receptor EphB1)	EPHB1	2047	ENSG00000154928			Ephb1 (MGI:1096337)
chr3	134599922	134656052	3q21	3q22.2	605739	KY, MFM7	Kyphoscoliosis peptidase	KY	339855	ENSG00000174611		Myopathy, myofibrillar, 7, 617114 (3), Autosomal recessive	Ky (MGI:96709)
chr3	135965672	136149614	3q22	3q22.2-q22.3	604944	PP2R3A, PR72, PR130	Protein phosphatase 2, regulatory subunit B'', alpha	PPP2R3A	5523	ENSG00000073711			Ppp2r3a (MGI:2442104)
chr3	136148917	136197299	3q22.3	3q22.3	614802	MSL2, KIAA1585	Male-specific lethal 2, Drosophila, homolog of	MSL2	55167	ENSG00000174579			Msl2 (MGI:1925103)
chr3	136250324	136330170	3q21-q22	3q22.3	232050	PCCB	Propionyl Coenzyme A carboxylase, beta polypeptide	PCCB	5096	ENSG00000114054	pccB complementation group	Propionicacidemia, 606054 (3), Autosomal recessive	Pccb (MGI:1914154)
chr3	136336234	136752411	3q22.3	3q22.3	604358	STAG1, MRD47	Stromal antigen 1	STAG1	10274	ENSG00000118007		Mental retardation, autosomal dominant 47, 617635 (3), Autosomal dominant	Stag1 (MGI:1098658)
chr3	136819018	136855891	3q22.3	3q22.3	617812	SLC35G2, TMEM22	Solute carrier family 35, member G2	SLC35G2	80723	ENSG00000168917			Slc35g2 (MGI:2685365)
chr3	136862207	136951609	3q21	3q22.3	600508	NCK	Non-catalytic region of tyrosine kinase	NCK1	4690	ENSG00000158092			Nck1 (MGI:109601)
chr3	137764291	137766333	3q23	3q22.3	604747	SOX14	SRY-box 14	SOX14	8403	ENSG00000168875			Sox14 (MGI:98362)
chr3	138061984	138115861	3q22.3	3q22.3	617570	DZIP1L, DZIP2, PKD5	DAZ-interacting zinc finger protein 1-like	DZIP1L	199221	ENSG00000158163		Polycystic kidney disease 5, 617610 (3), Autosomal recessive	Dzip1l (MGI:1919757)
chr3	138123717	138133309	3p14.3	3q22.3	616709	A4GNT	Alpha-1,4-N-acetylglucosaminyltransferase	A4GNT	51146	ENSG00000118017			A4gnt (MGI:2143261)
chr3	138160987	138174948	3q22.3	3q22.3	607024	DBR1	Debranching enzyme 1, S. cerevisiae, homolog of	DBR1	51163	ENSG00000138231			Dbr1 (MGI:1931520)
chr3	138347647	138405534	3q22.3	3q22.3	608435	MRAS, RRAS3	Muscle Ras viral oncogene homolog	MRAS	22808	ENSG00000158186			Mras (MGI:1100856)
chr3	138434572	138479941	3q22.3	3q22.3	616692	ESYT3, FAM62C	Extended synaptotagmin-like protein 3	ESYT3	83850	ENSG00000158220			Esyt3 (MGI:1098699)
chr3	138494338	138594382	3q22.3	3q22.3	614310	CEP70	Centrosomal protein, 70kD	CEP70	80321	ENSG00000114107			Cep70 (MGI:1915371)
chr3	138608098	138633375	3q22	3q22.3	617535	FAIM	Fax apoptotic inhibitory molecule	FAIM	55179	ENSG00000158234			Faim (MGI:1344387)
chr3	138652697	138834937	3q22.3	3q22.3	602925	PIK3CB, PI3KCB	Phosphatidylinositol 3-kinase, catalytic, beta	PIK3CB	5291	ENSG00000051382			Pik3cb (MGI:1922019)
chr3	138944223	138947139	3q23	3q22.3	605597	FOXL2, BPES, BPES1, PFRK, POF3	Forkhead transcription factor FOXL2	FOXL2	668	ENSG00000183770		Blepharophimosis, epicanthus inversus, and ptosis, type 1, 110100 (3), Autosomal dominant; Blepharophimosis, epicanthus inversus, and ptosis, type 2, 110100 (3), Autosomal dominant; Premature ovarian failure 3, 608996 (3), Autosomal dominant	Foxl2 (MGI:1349428)
chr3	139000000	143100000	3q23		612221	STQTL10	Stature quantitative trait locus 10		100270794		associated with rs6440003	{Stature QTL 10}, 612221 (2)	
chr3	139344013	139357128	3q23	3q23	605810	MRPS22, C3orf5, COXPD5	Mitochondrial ribosomal protein S22	MRPS22	56945	ENSG00000175110		Combined oxidative phosphorylation deficiency 5, 611719 (3), Autosomal recessive	Mrps22 (MGI:1928137)
chr3	139355594	139389679	3q23	3q23	606990	COPB2, MCPH19	Coatomer protein complex, subunit beta-2	COPB2	9276	ENSG00000184432	mutation identified in 1 MCPH19 family	?Microcephaly 19, primary, autosomal recessive, 617800 (3), Autosomal recessive	Copb2 (MGI:1354962)
chr3	139452883	139476509	3q21-qter	3q23	180280	RBP2, CRBP2	Retinol-binding protein-2, cellular	RBP2	5948	ENSG00000114113	close to CRBP1		Rbp2 (MGI:97877)
chr3	139517433	139539828	3q21-q22	3q23	180260	RBP1, CRBP1	Retinol-binding protein-1, cellular	RBP1	5947	ENSG00000114115	close to CRBP2		Rbp1 (MGI:97876)
chr3	139560179	139678049	3q23	3q23	608702	NMNAT3, PNAT3	Nicotinamide nucleotide adenylyltransferase 3	NMNAT3	349565	ENSG00000163864			
chr3	139935184	140577396	3q23	3q23	611323	CLSTN2	Calsyntenin 2	CLSTN2	64084	ENSG00000158258			Clstn2 (MGI:1929897)
chr3	140941819	140979942	3q23	3q23	616149	SLC25A36, PNC2	Solute carrier family 25 (mitochondrial carrier, pyrimidine nucleotide transporter), member 36	SLC25A36	55186	ENSG00000114120			Slc25a36 (MGI:1924909)
chr3	141051401	141148610	3q23	3q23	611660	SPSB4, SSB4	SPRY domain- and SOCS box-containing 4	SPSB4	92369	ENSG00000175093			Spsb4 (MGI:2183445)
chr3	141324212	141449791	3q23	3q23	612218	ZBTB38	Zinc finger- and BTB domain-containing protein 38	ZBTB38	253461	ENSG00000177311			Zbtb38 (MGI:2442866)
chr3	141487046	141615362	3q22-q23	3q23	601589	RASA2, GAP1M	RAS p21 protein activator 2	RASA2	5922	ENSG00000155903			Rasa2 (MGI:2149960)
chr3	141738208	141746802	3q22-q24	3q23	603863	RNF7, ROC2, SAG	RING finger protein-7 (regulator of cullins 2; sensitive to apoptosis gene)	RNF7	9616	ENSG00000114125			Rnf7 (MGI:1337096)
chr3	141763123	141818489	3q21-q23	3q23	606987	GRK7, GPRK7	G protein-coupled receptor kinase 7	GRK7	131890	ENSG00000114124			
chr3	141876591	141926547	3q22-q23	3q23	601867	ATP1B3	ATPase, Na+/K+ transporting, beta 3 polypeptide	ATP1B3	483	ENSG00000069849			Atp1b3 (MGI:107788)
chr3	141944427	142149543	3q23	3q23	602160	TFDP2, DP2	Transcription factor Dp-2 (E2F dimerization partner 2)	TFDP2	7029	ENSG00000114126			Tfdp2 (MGI:107167)
chr3	142306606	142448061	3q25-q26.1	3q23	607994	XRN1, SEP1	Exoribonuclease 1	XRN1	54464	ENSG00000114127			Xrn1 (MGI:891964)
chr3	142449234	142578825	3q22-q24	3q23	601215	ATR, FRP1, SCKL1, FCTCS	Ataxia-telangiectasia and Rad3-related (FRAP-related protein-1)	ATR	545	ENSG00000175054	mutation identified in 1 FCTCS family	?Cutaneous telangiectasia and cancer syndrome, familial, 614564 (3), Autosomal dominant; Seckel syndrome 1, 210600 (3), Autosomal recessive	Atr (MGI:108028)
chr3	142596386	142713663	3q23	3q23	602734	PLS1	Plastin-1	PLS1	5357	ENSG00000120756			Pls1 (MGI:104809)
chr3	142724423	142807887	3q22-q24	3q23	602343	TRPC1, TRP1	Transient receptor potential channel 1	TRPC1	7220	ENSG00000144935	also called Htrp-1		Trpc1 (MGI:109528)
chr3	142817859	142889202	3q21-q24	3q23	607064	PCOLCE2	Procollagen C-endopeptidase enhancer-2	PCOLCE2	26577	ENSG00000163710			Pcolce2 (MGI:1923727)
chr3	142961230	142963335	3q23	3q23	614580	PAQR9	Progestin and ADIPOQ receptor family, member 9	PAQR9	344838	ENSG00000188582			Paqr9 (MGI:1922802)
chr3	143001529	143060724	3q23	3q23	617849	U2SURP, SR140, KIAA0332	U2 small nuclear ribonucleoprotein-associated SURP domain-containing protein	U2SURP	23350	ENSG00000163714			U2surp (MGI:1915208)
chr3	143100000	183000000	3q24-q26		610761	HDLCQ5	High density lipoprotein cholesterol level QTL 5		100188818		max lod at D3S3053	[High density lipoprotein cholesterol level QTL 5], 610761 (2)	
chr3	143100000	183000000	3q24-q26		606660	UVM1	Melanoma, uveal, susceptibility to, 1		170592			{Melanoma, uveal, susceptibility to, 1}, 606660 (2)	
chr3	143119775	143124013	3q24	3q24	603798	CHST2	Carbohydrate sulfotransferase-2 (GlcNAc-6-O-sulfotransferase; N-acetylglucosamine-6-O-sulfotransferase)	CHST2	9435	ENSG00000175040	mapped by FISH to 7q31		Chst2 (MGI:1891160)
chr3	143265221	143848530	3q24	3q24	608396	SLC9A9, AUTS16	Solute carrier family 9 (sodium/hydrogen exchanger), member A9	SLC9A9	285195	ENSG00000181804	mutation identified in 1 family	{?Autism susceptibility 16}, 613410 (3)	Slc9a9 (MGI:2679732)
chr3	143971797	143992367	3q24	3q24	612200	C3orf58, DIA1	Chromosome 3 open reading frame 58	C3orf58	205428	ENSG00000181744			1190002N15Rik (MGI:1916111)
chr3	146069436	146161494	3q23-q24	3q24	601865	PLOD2, LH2, TLH, BRKS2	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase (lysine hydroxylase) 2	PLOD2	5352	ENSG00000152952		Bruck syndrome 2, 609220 (3), Autosomal recessive	Plod2 (MGI:1347007)
chr3	146192334	146251178	3q23	3q24	607612	PLSCR4	Phospholipid scramblase 4	PLSCR4	57088	ENSG00000114698			Plscr4 (MGI:2143267)
chr3	146391362	146497162	3q23	3q24	607610	PLSCR2	Phospholipid scramblase 2	PLSCR2	57047	ENSG00000163746			
chr3	146515177	146544840	3q23	3q24	604170	PLSCR1, MMTRA1B	Phospholipid scramblase 1	PLSCR1	5359	ENSG00000188313			Plscr1 (MGI:893575)
chr3	147386047	147407475	3q24	3q24	608948	ZIC4	Zic family, member 4	ZIC4	84107	ENSG00000174963			Zic4 (MGI:107201)
chr3	147409393	147416718	3q24	3q24	600470	ZIC1, CRS6	Zic family, member 1	ZIC1	7545	ENSG00000152977		Craniosynostosis 6, 616602 (3), Autosomal dominant	Zic1 (MGI:106683)
chr3	148697870	148743002	3q21-q25	3q24	106165	AGTR1, AGTR1A, AT2R1	Angiotensin receptor 1	AGTR1	185	ENSG00000144891		{Hypertension, essential}, 145500 (3), Multifactorial; Renal tubular dysgenesis, 267430 (3), Autosomal recessive	Agtr1a (MGI:87964)
chr3	148827800	148860186	3q24	3q24	114852	CPB1, PCPB, PASP	Carboxypeptidase B1, tissue	CPB1	1360	ENSG00000153002			Cpb1 (MGI:1923953)
chr3	148865255	148897090	3q24	3q24	114851	CPA3	Carboxypeptidase A3, mast cell	CPA3	1359	ENSG00000163751			Cpa3 (MGI:88479)
chr3	148991407	149027668	3q24-q25.1	3q24	603942	GYG1, GSD15	Glycogenin 1	GYG1	2992	ENSG00000163754	mutation identified in 1 GSD15 patient	?Glycogen storage disease XV, 613507 (3), Autosomal recessive; Polyglucosan body myopathy 2, 616199 (3), Autosomal recessive	Gyg (MGI:1351614)
chr3	149030063	149086553	3q25.1-q26.1	3q24	603257	SMARCA3, SNF2L3, HIP116	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 3	HLTF	6596	ENSG00000071794			Hltf (MGI:1196437)
chr3	149129583	149173195	3q24	3q24	606118	HPS3	HPS gene 3	HPS3	84343	ENSG00000163755		Hermansky-Pudlak syndrome 3, 614072 (3), Autosomal recessive	Hps3 (MGI:2153839)
chr3	149162409	149222044	3q23-q24	3q24-q25	117700	CP	Ceruloplasmin	CP	1356	ENSG00000047457	~15cM from TF	Cerebellar ataxia, 604290 (3), Autosomal recessive; Hemosiderosis, systemic, due to aceruloplasminemia, 604290 (3), Autosomal recessive; [Hypoceruloplasminemia, hereditary], 604290 (3), Autosomal recessive	Cp (MGI:88476)
chr3	149200000	188200000	3q25-q27		608638	ASPG1	Asperger syndrome, susceptibility to, 1		431710		max lod with D3S3037	{Asperger syndrome susceptibility 1}, 608638 (2), Isolated cases, Multifactorial	
chr3	149200000	188200000	3q25-q27		607373	AUTS8	Autism, susceptibility to, 8		282553			{Autism susceptibility 8}, 607373 (2), Isolated cases, Multifactorial	
chr3	149200000	183000000	3q25-q26		612008	CELIAC10	Celiac disease, susceptibility to, 10		100188872		associated with rs17810546	{Celiac disease, susceptibility to, 10}, 612008 (2)	
chr3	149200000	183000000	3q25-q26		615697	ETL6	Epilepsy, familial temporal lobe, 6		103106902		between D3S1584 and D3S3520	Epilepsy, familial temporal lobe, 6, 615697 (2)	
chr3	149369017	149377780	3q21-q25	3q25.1	191155	TM4SF1, M3S1, TAAL6	Transmembrane-4 superfamily, member 1	TM4SF1	4071	ENSG00000169908			Tm4sf1 (MGI:104678)
chr3	149474580	149503393	3q25	3q25.1	606567	TM4SF4, ILTMP	Transmembrane 4 superfamily, member 4	TM4SF4	7104	ENSG00000169903			Tm4sf4 (MGI:2385173)
chr3	149517228	149724787	3q24	3q25.1	607392	WWTR1, TAZ	WW domain-containing transcription regulator 1	WWTR1	25937	ENSG00000018408			Wwtr1 (MGI:1917649)
chr3	149738469	149752498	3q25.1	3q25.1	616699	COMMD2	COMM domain-containing protein 2	COMMD2	51122	ENSG00000114744			Commd2 (MGI:1098806)
chr3	149964903	149970953	3q25.1-q25.2	3q25.1	176590	PFN2, PFL, D3S1319E	Profilin-2	PFN2	5217	ENSG00000070087	mapped previously to chr.1		Pfn2 (MGI:97550)
chr3	149981660	149983365	3q25.1	3q25.1	611365	TMEM183B, C1orf37DUP	Transmembrane protein 183B	TMEM183B	653659				
chr3	150408334	150460118	3q25.1	3q25.1	617724	TSC22D2, KIAA0669	TSC22 domain family, member 2	TSC22D2	9819	ENSG00000196428			Tsc22d2 (MGI:1919283)
chr3	150541992	150546640	3q25.1	3q25.1	617674	SERP1, RAMP4	Stress-associated endoplasmic reticulum protein 1	SERP1	27230	ENSG00000120742			Serp1 (MGI:92638)
chr3	150546677	150586015	3q25.1	3q25.1	609234	EIF2A	Eukaryotic translation initiation factor 2A	EIF2A	83939	ENSG00000144895			Eif2a (MGI:1098684)
chr3	150603262	150630446	3q24	3q25.1	607912	SELENOT, SELT	Selenoprotein T	SELENOT	51714	ENSG00000198843			Selenot (MGI:1916477)
chr3	150741122	150763147	3q25	3q25.1	602213	SIAH2	Seven in absentia, Drosophila, homolog of, 2	SIAH2	6478	ENSG00000181788			Siah2 (MGI:108062)
chr3	150926162	150972998	3q21-q25	3q25.1	606397	CLRN1, USH3A, USH3, RP61	Clarin 1	CLRN1	7401	ENSG00000163646	frequent in Finland; ?digenic interaction with MYO7A	Retinitis pigmentosa 61, 614180 (3); Usher syndrome, type 3A, 276902 (3), Autosomal recessive	Clrn1 (MGI:2388124)
chr3	151085664	151436676	3q21-q25	3q25.1	611318	MED12L, NOPAR, KIAA1635	Mediator complex subunit 12-like	MED12L	116931	ENSG00000144893			Med12l (MGI:2139916)
chr3	151212114	151279166	3q25.1	3q25.1	610116	P2RY14, BPR105, KIAA0001	Purinergic receptor P2Y, G protein-coupled, 14	P2RY14	9934	ENSG00000174944			P2ry14 (MGI:2155705)
chr3	151294085	151316847	3q24	3q25.1	606379	GPR87	G protein-coupled receptor 87	GPR87	53836	ENSG00000138271			Gpr87 (MGI:1934133)
chr3	151326307	151329548	3q24	3q25.1	606380	GPR86	G protein-coupled receptor 86	P2RY13	53829	ENSG00000181631			P2ry13 (MGI:1921441)
chr3	151336842	151384811	3q24-q25	3q25.1	600515	P2RY12, P2Y12, BDPLT8	Purinergic receptor P2Y, G protein-coupled, 12	P2RY12	64805	ENSG00000169313		Bleeding disorder, platelet-type, 8, 609821 (3), Autosomal recessive	P2ry12 (MGI:1918089)
chr3	151435050	151619925	3q25.1	3q25.1	617351	IGSF10	Immunoglobulin superfamily, member 10	IGSF10	285313	ENSG00000152580			Igsf10 (MGI:1923481)
chr3	151814007	151828487	3q21.3-q25.2	3q25.1	600338	AADAC, DAC	Arylacetamide deacetylase (esterase)	AADAC	13	ENSG00000114771			Aadac (MGI:1915008)
chr3	151873642	151884618	3q24-q25.1	3q25.1	606381	SUCNR1, GPR91	Succinate receptor 1	SUCNR1	56670	ENSG00000198829			Sucnr1 (MGI:1934135)
chr3	152243655	152465779	3q25	3q25.1-q25.2	606516	MBNL1, KIAA0428, EXP	Muscleblind-like protein	MBNL1	4154	ENSG00000152601			Mbnl1 (MGI:1928482)
chr3	152834692	152841438	3q25	3q25.2	601167	P2RY1, P2Y1	Purinergic receptor P2Y, G-protein coupled, 1	P2RY1	5028	ENSG00000169860			P2ry1 (MGI:105049)
chr3	153162211	153170623	3q25.2	3q25.2	179541	RAP2B	Ras-related protein 2B	RAP2B	5912	ENSG00000181467			Rap2b (MGI:1921262)
chr3	154121002	154257826	3q25.2	3q25.2	617552	ARHGEF26, SGEF	Rho guanine nucleotide exchange factor 26	ARHGEF26	26084	ENSG00000114790			Arhgef26 (MGI:1918053)
chr3	154271827	154324496	3q25.2	3q25.2	612767	DHX36, G4R1, RHAU, KIAA1488	DEAH (Asp-Glu-Ala-His) box polypeptide 36	DHX36	170506	ENSG00000174953			Dhx36 (MGI:1919412)
chr3	155024123	155183728	3q21-q27	3q25.2	120520	MME, CD10, CALLA, NEP, CMT2T, SCA43	Membrane metallo-endopeptidase (common acute lymphocytic leukemia antigen)	MME	4311	ENSG00000196549	mutation identified in 1 SCA43 family	Charcot-Marie-Tooth disease, axonal, type 2T, 617017 (3), Autosomal recessive, Autosomal dominant; ?Spinocerebellar ataxia 43, 617018 (3), Autosomal dominant	Mme (MGI:97004)
chr3	155290231	155293699	3q25.2	3q25.2	616891	DWORF, LOC100507537	Dwarf open reading frame		100507537	ENSG00000240045			
chr3	155300000	161000000	3q25.3		613459	BWQTL2	Birth weight quantitative trait locus 2		100502569		associated with rs900400	[Birth weight QTL 2], 613459 (2)	
chr3	155458602	155745723	3q25.31	3q25.31	612835	PLCH1, PLCL3, KIAA1069	Phospholipase C, eta-1	PLCH1	23007	ENSG00000114805			Plch1 (MGI:2683547)
chr3	155826510	155855357	3q25.31	3q25.31	603690	SLC33A1, ACATN, AT1, SPG42, CCHLND	Solute carrier family 33 (acetyl-CoA transporter), member 1	SLC33A1	9197	ENSG00000169359		Congenital cataracts, hearing loss, and neurodegeneration, 614482 (3), Autosomal recessive; Spastic paraplegia 42, autosomal dominant, 612539 (3), Autosomal dominant	Slc33a1 (MGI:1332247)
chr3	155869429	155943678	3q24	3q25.31	600358	GMPS	Guanine monophosphate synthetase	GMPS	8833	ENSG00000163655	fusion gene with MLL in AML		Gmps (MGI:2448526)
chr3	156118215	156542647	3q26.1	3q25.31	601141	KCNAB1, KCNA1B	Potassium voltage-gated channel, shaker-related subfamily, beta member 1	KCNAB1	7881	ENSG00000169282			Kcnab1 (MGI:109155)
chr3	156539552	156555199	3q25.31	3q25.31	606213	SSR3, TRAPG	Signal sequence receptor, gamma	SSR3	6747	ENSG00000114850			Ssr3 (MGI:1914687)
chr3	156674415	156706769	3q25.31	3q25.31	612480	TIPARP	TCDD-inducible poly(ADP-ribose) polymerase	TIPARP	25976	ENSG00000163659			Tiparp (MGI:2159210)
chr3	156826286	157047658	3q25.31	3q25.31	613536	LEKR1	Leucine-, glutamate-, and lysine-rich protein 1	LEKR1	389170	ENSG00000197980			Lekr1 (MGI:3645902)
chr3	157146501	157160759	3q25.31	3q25.31	613384	CCNL1, ANIA6A	Cyclin L1	CCNL1	57018	ENSG00000163660			Ccnl1 (MGI:1922664)
chr3	157259741	157503776	3q24-q25	3q25.31-q25.32	609594	VEPH1, MELT, KIAA1692	Ventricular zone-expressed PH domain-containing protein, zebrafish, homolog of, 1	VEPH1	79674	ENSG00000197415			Veph1 (MGI:1920039)
chr3	157436790	157443627	3q25	3q25.32	602492	PTX3	Pentraxin-3	PTX3	5806	ENSG00000163661			Ptx3 (MGI:104641)
chr3	158096010	158106211	3q25-q26	3q25.32	602504	SHOX2, SHOT, OG12	Short stature homeo box 2	SHOX2	6474	ENSG00000168779			Shox2 (MGI:1201673)
chr3	158110051	158544834	3q25.32	3q25.32	613352	RSRC1, SRRP53	Arginine/serine-rich coiled-coil protein 1	RSRC1	51319	ENSG00000174891			Rsrc1 (MGI:1914130)
chr3	158571162	158606459	3q25.1	3q25.32	601402	MLF1	Myeloid leukemia factor-1	MLF1	4291	ENSG00000178053		Leukemia, acute myeloid, 601626 (1), Autosomal dominant	Mlf1 (MGI:1341819)
chr3	158644523	158692571	3q25.32	3q25.32	606639	GFM1, EFG1, GFM, COXPD1	Mitochondrial elongation factor G1	GFM1	85476	ENSG00000168827		Combined oxidative phosphorylation deficiency 1, 609060 (3), Autosomal recessive	Gfm1 (MGI:107339)
chr3	158666413	158672721	3q25.3	3q25.32	609305	LXN, ECI, TCI	Latexin	LXN	56925	ENSG00000079257			Lxn (MGI:107633)
chr3	158696891	158732943	3q25.3	3q25.32	605090	RARRES1, TIG1	Retinoic acid receptor responder 1	RARRES1	5918	ENSG00000118849			Rarres1 (MGI:1924461)
chr3	159069251	159266306	3q25	3q25.32	611622	IQCJ	IQ motif-containing protein J	IQCJ	654502	ENSG00000214216			Iqcj (MGI:3644166)
chr3	159988835	159996018	3p12-q13.2	3q25.33	161560	IL12A	Interleukin-12A (natural killer cell stimulatory factor-1, cytotoxic lymphocyte maturation factor-1, p35)	IL12A	3592	ENSG00000168811			Il12a (MGI:96539)
chr3	160256985	160399531	3q25.33	3q25.33	611177	IFT80, KIAA1374, WDR56, SRTD2, ATD2	Intraflagellar transport 80, Chlamydomonas, homolog of	IFT80	57560	ENSG00000068885		Short-rib thoracic dysplasia 2 with or without polydactyly, 611263 (3), Autosomal recessive	Ift80 (MGI:1915509)
chr3	160399303	160434961	3q26.1	3q25.33	605575	CAPC	Chromosome-associated protein C	SMC4	10051	ENSG00000113810			Smc4 (MGI:1917349)
chr3	160435502	160449837	3q26.1	3q25.33	616148	TRIM59, RNF104, MRF1, IFT80L	Tripartite motif-containing protein 59	TRIM59	286827	ENSG00000213186			Trim59 (MGI:1914199)
chr3	160494994	160565587	3q26.1	3q25.33	602970	KPNA4, QIP1	Karyopherin alpha-4	KPNA4	3840	ENSG00000186432			Kpna4 (MGI:1100848)
chr3	160514906	160515235	3q25.33	3q25.33	615644	SCARNA7	Small Cajal body-specific RNA 7	SCARNA7	677767				
chr3	160677159	160678447	3q25.33	3q25.33	614439	ARL14, ARF7	ADP-ribosylation factor-like 14	ARL14	80117	ENSG00000179674			Arl14 (MGI:1918869)
chr3	160755531	161078906	3q26.1	3q25.3-q26.1	611931	PPM1L, PP2CE	Protein phosphatase 1-like	PPM1L	151742	ENSG00000163590			Ppm1l (MGI:2139740)
chr3	161000000	183000000	3q26		109200	AGA1, MPB	Alopecia, androgenetic, 1		100188784			Alopecia, androgenetic, 1, 109200 (2), Autosomal dominant	
chr3	161000000	183000000	3q26		600049	MDS1	Myelodysplasia syndrome-1				cen--EVI1--MDS1--EAP--tel	Myelodysplasia syndrome-1 (3)	
chr3	161000000	183000000	3q26.1-q26.3		606082	MNG3	Multinodular goiter-3		94337			Goiter, multinodular, 3, 606082 (2)	
chr3	161000000	183000000	3q26		609257	MYP8	Myopia 8	MYP8	553192			Myopia 8, 609257 (2), Multifactorial	
chr3	161083882	161105468	3q25	3q26.1	603094	B3GALT3, GLCT3, GLOB	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 3	B3GALNT1	8706	ENSG00000169255		[Blood group, P1PK system, P(k) phenotype], 111400 (3); [Blood group, globoside system], 615021 (3)	B3galnt1 (MGI:1349405)
chr3	161221289	161253531	3q26.1	3q26.1	611021	NMD3	NMD3, S. cerevisiae, homolog of	NMD3	51068	ENSG00000169251			Nmd3 (MGI:2140103)
chr3	161344783	161373227	3q26.1	3q26.1	610412	SPTSSB, C3orf57, SSSPTB, ADMP	Serine palmitoyltransferase, small subunit B	SPTSSB	165679	ENSG00000196542			Sptssb (MGI:1913433)
chr3	164978897	165078494	3q25-q26	3q26.1	609845	SI	Sucrase-isomaltase	SI	6476	ENSG00000090402		Sucrase-isomaltase deficiency, congenital, 222900 (3), Autosomal recessive	Sis (MGI:1917233)
chr3	165186719	165197108	3q26	3q26.1	609679	SLITRK3, KIAA0848	SLIT- and NTRK-like family, member 3	SLITRK3	22865	ENSG00000121871			Slitrk3 (MGI:2679447)
chr3	165772902	165837471	3q26.1-q26.2	3q26.1	177400	BCHE, CHE1	Butyrylcholinesterase	BCHE	590	ENSG00000114200	distal to CP, TF	Apnea, postanesthetic (3)	Bche (MGI:894278)
chr3	167441788	167474131	3q26.1-q26.2	3q26.1	605587	SERPIN12, PI14, MEPI	Protease inhibitor 14	SERPINI2	5276	ENSG00000114204			Serpini2 (MGI:1915181)
chr3	167683892	167735809	3q26.1	3q26.1	609118	PDCD10, TFAR15, CCM3	Programmed cell death 10	PDCD10	11235	ENSG00000114209		Cerebral cavernous malformations 3, 603285 (3)	Pdcd10 (MGI:1928396)
chr3	167735643	167825568	3q26	3q26.1	602445	SERPINI1, PI12	Protease inhibitor 12	SERPINI1	5274	ENSG00000163536		Encephalopathy, familial, with neuroserpin inclusion bodies, 604218 (3), Autosomal dominant	Serpini1 (MGI:1194506)
chr3	167900000	176000000	3q26.2-q26.31		610422	APMR2	Alopecia-mental retardation syndrome 2		100049544		between D3S1564 and D3S2427	Alopecia-mental retardation syndrome 2, 610422 (2), Autosomal recessive	
chr3	167900000	183000000	3q26.2-q26.33		612637	FEB10	Febrile seizures, familial, 10		100271923		between D3S3656 and D3S1232	Febrile seizures, familial, 10, 612637 (2)	
chr3	168008671	168095924	3q26.2	3q26.2	606805	GOLIM4, GOLPH4, GPP130	Golgi integral membrane protein 4	GOLIM4	27333	ENSG00000173905			Golim4 (MGI:1920374)
chr3	169083498	169663780	3q26	3q26.2	165215	MECOM, EVI1, RUSAT2	MDS1 and EVS1 complex locus	MECOM	2122	ENSG00000085276		Radioulnar synostosis with amegakaryocytic thrombocytopenia 2, 616738 (3), Autosomal dominant	Mecom (MGI:95457)
chr3	169764609	169765059	3q21-q28	3q26.2	602322	TERC, TRC3, TR, DKCA1, PFBMFT2	Telomerase RNA component	TERC	7012			{Aplastic anemia}, 614743 (3), Autosomal dominant; Dyskeratosis congenita, autosomal dominant 1, 127550 (3), Autosomal dominant; {Pulmonary fibrosis, idiopathic, susceptibility to}, 614743 (3), Autosomal dominant	
chr3	169766920	169769894	3q26.2	3q26.2	608534	ARPM1	Actin-related protein M1	ACTRT3	84517	ENSG00000184378			Actrt3 (MGI:1923902)
chr3	169772229	169772301	3q26.2	3q26.2	615310	TRV-AAC1-1, TRNAV24	Transfer RNA valine (AAC) 1-1	TRV-AAC1-1	100189318				
chr3	169772246	169790454	3q26.2	3q26.2	606042	MYNN	Myoneurin	MYNN	55892	ENSG00000085274			Mynn (MGI:1931415)
chr3	169966135	169998372	3q26.2	3q26.2	602173	SEC62, TLOC1, HTP1	Sec62, S. cerevisiae, homolog of	SEC62	7095	ENSG00000008952			Sec62 (MGI:1916526)
chr3	170222431	170305981	3p25-q27	3q26.2	600539	PRKCI	Protein kinase C, iota	PRKCI	5584	ENSG00000163558	pseudogene on X		Prkci (MGI:99260)
chr3	170357677	170396848	3q26.2	3q26.2	165340	SKIL, SNO	SKI-like	SKIL	6498	ENSG00000136603			Skil (MGI:106203)
chr3	170418864	170434690	3q26.2-q26.3	3q26.2	601326	CLDN11, OTM, OSP	Claudin 11 (oligodendrocyte transmembrane protein)	CLDN11	5010	ENSG00000013297			Cldn11 (MGI:106925)
chr3	170459553	170586073	3q26.2	3q26.2	615720	SLC7A14, KIAA1613, RP68	Solute carrier family 7, member 14	SLC7A14	57709	ENSG00000013293		Retinitis pigmentosa 68, 615725 (3), Autosomal recessive	Slc7a14 (MGI:3040688)
chr3	170888414	170908636	3q25-q27	3q26.2	605782	EIF5A2	Eukaryotic translation initiation factor 5A2	EIF5A2	56648	ENSG00000163577			Eif5a2 (MGI:1933735)
chr3	170996340	171026978	3q26.1-q26.3	3q26.2	138160	SLC2A2, GLUT2	Solute carrier family 2 (facilitated glucose transporter), member 2	SLC2A2	6514	ENSG00000163581		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant; Fanconi-Bickel syndrome, 227810 (3), Autosomal recessive	Slc2a2 (MGI:1095438)
chr3	171058413	171460407	3q26.2-q26.3	3q26.2-q26.3	610005	TNIK, KIAA0551, MRT54	TRAF2-and NCK-interacting kinase	TNIK	23043	ENSG00000154310		Mental retardation, autosomal recessive 54, 617028 (3), Autosomal recessive	Tnik (MGI:1916264)
chr3	171200000	188200000	3q26.3-q27.3		203650	APMR1	Alopecia-mental retardation syndrome 1				max lod at D3S3583	Alopecia-mental retardation syndrome 1, 203650 (2), Autosomal recessive	
chr3	171600403	171810493	3q26	3q26.31	602382	PLD1, CVDD	Phospholipase D1, phosphatidylcholine-specific	PLD1	5337	ENSG00000075651		Cardiac valvular defect, developmental, 212093 (3), Autosomal recessive	Pld1 (MGI:109585)
chr3	172039627	172400702	3q26	3q26.31	611909	FNDC3B, FAD104	Fibronectin domain III-containing protein 3B	FNDC3B	64778	ENSG00000075420			Fndc3b (MGI:1919257)
chr3	172443290	172448455	3q26.3	3q26.31	601898	GHSR, GHDP	Growth hormone secretagogue receptor	GHSR	2693	ENSG00000121853		Growth hormone deficiency, isolated partial, 615925 (3), Autosomal recessive, Autosomal dominant	Ghsr (MGI:2441906)
chr3	172505507	172523506	3q26	3q26.31	603598	TNFSF10, TRAIL, APO2L	Tumor necrosis factor ligand superfamily, member 10	TNFSF10	8743	ENSG00000121858			Tnfsf10 (MGI:107414)
chr3	172630644	172711217	3q26.3	3q26.31	613234	NCEH1, NCEH, KIAA1363	Neutral cholesterol ester hydrolase 1	NCEH1	57552	ENSG00000144959			Nceh1 (MGI:2443191)
chr3	172750684	172829272	3q26.1-q26.2	3q26.31	600586	ECT2	Epithelial cell transforming sequence 2 oncogene	ECT2	1894	ENSG00000114346			Ect2 (MGI:95281)
chr3	172889356	173141267	3q26.3	3q26.31	609856	SPATA16, SPGF6	Spermatogenesis-associated protein 16	SPATA16	83893	ENSG00000144962	mutation identified in 1 SPGF6 family	?Spermatogenic failure 6, 102530 (3), Autosomal recessive	Spata16 (MGI:1918112)
chr3	173395898	174291286	3q26.3	3q26.31	600568	NLGN1	Neuroligin 1	NLGN1	22871	ENSG00000169760			Nlgn1 (MGI:2179435)
chr3	174438533	175810547	3q26.3	3q26.31	608806	NAALADL2	N-acetylated alpha-linked acidic dipeptidase-like 2	NAALADL2	254827	ENSG00000177694	?involved in Cornelia de Lange syndrome		Naaladl2 (MGI:2685867)
chr3	176000000	192600000	3q26.32-q28		615127	FAME4, FCMTE4	Epilepsy, familial adult myoclonic, 4		101409188		between D3S3730 and D3S1580	Epilepsy, myoclonic, familial adult, 4, 615127 (2), Autosomal dominant	
chr3	177019354	177197356	3q26.32	3q26.32	608628	TBL1XR1, TBLR1, IRA1, C21, MRD41	Transducin-beta-like 1 receptor 1	TBL1XR1	79718	ENSG00000177565		Mental retardation, autosomal dominant 41, 616944 (3), Autosomal dominant; Pierpont syndrome, 602342 (3), Autosomal dominant	Tbl1xr1 (MGI:2441730)
chr3	178536297	178844428	3q26.32	3q26.32	605214	KCNMB2	Potassium channel, calcium-activated, large conductance, subfamily M, beta member 2	KCNMB2	10242	ENSG00000197584			Kcnmb2 (MGI:1919663)
chr3	179017222	179071867	3q26.3-q27	3q26.32	606452	WIG1	Wildtype p53-induced gene	ZMAT3	64393	ENSG00000172667			Zmat3 (MGI:1195270)
chr3	179148113	179240092	3q26.3	3q26.32	171834	PIK3CA, CLOVE, MCAP, MCM, MCMTC, CWS5	Phosphatidylinositol 3-kinase, catalytic, alpha polypeptide	PIK3CA	5290	ENSG00000121879		Breast cancer, somatic, 114480 (3); CLOVE syndrome, somatic, 612918 (3); Colorectal cancer, somatic, 114500 (3); Cowden syndrome 5, 615108 (3); Gastric cancer, somatic, 613659 (3); Hepatocellular carcinoma, somatic, 114550 (3); Keratosis, seborrheic, somatic, 182000 (3); Megalencephaly-capillary malformation-polymicrogyria syndrome, somatic, 602501 (3); Nevus, epidermal, somatic, 162900 (3); Nonsmall cell lung cancer, somatic, 211980 (3); Ovarian cancer, somatic, 167000 (3)	Pik3ca (MGI:1206581)
chr3	179239748	179267049	3q26.3-q27.1	3q26.32	605222	KCNMB3	Potassium large conductance calcium-activated channel, subfamily M, beta member 3	KCNMB3	27094	ENSG00000171121			Kcnmb3 (MGI:3612244)
chr3	179396087	179451582	3q26.3	3q26.33	610863	GNB4, CMTD1F	Guanine nucleotide-binding protein, beta-4	GNB4	59345	ENSG00000114450		Charcot-Marie-Tooth disease, dominant intermediate F, 615185 (3), Autosomal dominant	Gnb4 (MGI:104581)
chr3	179562879	179588404	3q26.3	3q26.33	604958	ACTL6A, BAF53, BAF53A	Actin-like 6A	ACTL6A	86	ENSG00000136518			Actl6a (MGI:1861453)
chr3	179588464	179604645	3q26.3	3q26.33	611852	MRPL47	Mitochondrial ribosomal protein L47	MRPL47	57129	ENSG00000136522			Mrpl47 (MGI:1921850)
chr3	179653144	179789400	3q26.2-q26.3	3q26.33	603591	USP13, ISOT3	Ubiquitin-specific protease-13	USP13	8975	ENSG00000058056			Usp13 (MGI:1919857)
chr3	179794957	180037052	3q26.2-q27	3q26.33	611058	PEX5L, PEX5R, PXR2B	Peroxisome biogenesis factor 5-like	PEX5L	51555	ENSG00000114757			Pex5l (MGI:1916672)
chr3	180614007	180679494	3q26.33	3q26.33	613798	CCDC39	Coiled-coil domain-containing protein 39	CCDC39	339829	ENSG00000284862		Ciliary dyskinesia, primary, 14, 613807 (3)	Ccdc39 (MGI:1289263)
chr3	180912445	180982752	3q28	3q26.33	600819	FXR1	Fragile X mental retardation, autosomal homolog	FXR1	8087	ENSG00000114416	pseudogene on 12q12		Fxr1 (MGI:104860)
chr3	180983708	180989773	3q26.3	3q26.33	608977	DNAJC19, TIM14	DnaJ (Hsp40) homolog, subfamily C, member 19 (translocase of inner mitochondrial membrane 14, yeast, homolog of)	DNAJC19	131118	ENSG00000205981		3-methylglutaconic aciduria, type V, 610198 (3), Autosomal recessive	Dnajc19-ps,Dnajc19 (MGI:1914963,MGI:3709029)
chr3	181056679	181742227	3q26.33	3q26.33	616338	SOX2OT, NCRNA00043	SOX2 overlapping transcript, noncoding	SOX2-OT	347689				
chr3	181711923	181714435	3q26.3-q27	3q26.33	184429	SOX2, MCOPS3	SRY (sex determining region Y)-box 2	SOX2	6657	ENSG00000181449		Microphthalmia, syndromic 3, 206900 (3), Autosomal dominant; Optic nerve hypoplasia and abnormalities of the central nervous system, 206900 (3), Autosomal dominant	Sox2 (MGI:98364)
chr3	182793502	182923009	3q27	3q26.33	605869	ATP11B, ATPIR	ATPase, class VI, type 11B	ATP11B	23200	ENSG00000058063			Atp11b (MGI:1923545)
chr3	182938157	182986363	3q26.3	3q26.33	605905	DCUN1D1, RP42	DCN1 domain-containing protein 1	DCUN1D1	54165	ENSG00000043093	previously mapped to 6q16		Dcun1d1 (MGI:2150386)
chr3	183000000	188200000	3q27		605552	AOMS1, SYNX	Abdominal obesity-metabolic syndrome QTL1		65076		epistatic gene on 17p12	Abdominal obesity-metabolic syndrome 1, 605552 (2), Autosomal dominant	
chr3	183000000	192600000	3q27-q28		605229	SPG14	Spastic paraplegia 14, autosomal recessive	SPG14	57309			Spastic paraplegia 14, autosomal recessive, 605229 (2), Autosomal recessive	
chr3	183015217	183099586	3q25-q27	3q27.1	609010	MCCC1, MCCA	3-Methylcrotonyl-CoA carboxylase 1	MCCC1	56922	ENSG00000078070		3-Methylcrotonyl-CoA carboxylase 1 deficiency, 210200 (3), Autosomal recessive	Mccc1 (MGI:1919289)
chr3	183122214	183162878	3q26.3-q27	3q27.1	605883	DCLAMP	Lysosome-associated membrane glycoprotein, dendritic cell-specific	LAMP3	27074	ENSG00000078081			Lamp3 (MGI:2441659)
chr3	183253206	183273390	3q27.1	3q27.1	615333	B3GNT5	Beta-1,3-N-acetylglucosaminyltransferase 5	B3GNT5	84002	ENSG00000176597			B3gnt5 (MGI:2137302)
chr3	183487527	183555711	3q27.3	3q27.1	614214	KLHL6, FLJ00029	Kelch-like 6	KLHL6	89857	ENSG00000172578			Klhl6 (MGI:2686922)
chr3	183635618	183684518	3q27.1	3q27.1	611295	KLHL24, KRIP6, EBSSH	Kelch-like 24	KLHL24	54800	ENSG00000114796		Epidermolysis bullosa simplex, generalized, with scarring and hair loss, 617294 (3), Autosomal dominant	Klhl24 (MGI:1923035)
chr3	183697803	183812624	3q27.1	3q27.1	613373	YEATS2, KIAA1197	YEATS domain-containing protein 2	YEATS2	55689	ENSG00000163872			Yeats2 (MGI:2447762)
chr3	183815875	183825604	3q27	3q27.1	610593	MAPO6D1, SL21	MAP6 domain-containing protein 1	MAP6D1	79929	ENSG00000180834			Map6d1 (MGI:3607784)
chr3	183826487	183884907	3q27	3q27.1	607858	PARL	Presenilin-associated rhomboid-like protein	PARL	55486	ENSG00000175193			Parl (MGI:1277152)
chr3	183919933	184018009	3q27	3q27.1	605251	ABCC5, MRP5, MOATC	ATP-binding cassette, subfamily C, member 5	ABCC5	10057	ENSG00000114770			Abcc5 (MGI:1351644)
chr3	184031543	184039368	3q27	3q27.1	610122	HTR3D	5-hydroxytryptamine receptor 3, subunit D	HTR3D	200909	ENSG00000186090			
chr3	184053046	184060672	3q27	3q27.1	610121	HTR3C	5-hydroxytryptamine receptor 3C	HTR3C	170572	ENSG00000178084			
chr3	184097063	184106994	3q27	3q27.1	610123	HTR3E	5-hydroxytryptamine receptor 3, subunit E	HTR3E	285242	ENSG00000186038			
chr3	184135021	184145310	3q27	3q27.1	603945	EIF2B5, LVWM, CACH, CLE	Eukaryotic translation initiation factor 2B, subunit 5	EIF2B5	8893	ENSG00000145191		Leukoencephalopathy with vanishing white matter, 603896 (3), Autosomal recessive; Ovarioleukodystrophy, 603896 (3), Autosomal recessive	Eif2b5 (MGI:2446176)
chr3	184155310	184173613	3q27	3q27.1	601368	DVL3, DRS3	Dishevelled 3 (homologous to Drosophila dsh)	DVL3	1857	ENSG00000161202		Robinow syndrome, autosomal dominant 3, 616894 (3), Autosomal dominant	Dvl3 (MGI:108100)
chr3	184174845	184184090	3q28	3q27.1	601024	AP2M1, CLAPM1	Adaptor-related protein complex 2, mu 1 subunit	AP2M1	1173	ENSG00000161203			Ap2m1 (MGI:1298405)
chr3	184241404	184241488	3q27.1	3q27.1	611620	MIR1224, MIRN1224	Micro RNA 1224	MIR1224	100187716				
chr3	184242328	184258300	3q27	3q27.1	608750	ALG3, NOT56L, CDGS4, CDG1D	Alg3, S. cerevisiae, homolog of	ALG3	10195	ENSG00000214160		Congenital disorder of glycosylation, type Id, 601110 (3), Autosomal recessive	Alg3 (MGI:1098592)
chr3	184259214	184261462	3q27.1	3q27.1	608721	CAMK2N2, CAMKIIN	Calcium/calmodulin-dependent protein kinase II inhibitor 2	CAMK2N2	94032	ENSG00000163888			Camk2n2 (MGI:1920297)
chr3	184276010	184293030	3q27.1	3q27.1	610145	ECE2, KIAA0604	Endothelin-converting enzyme 2	ECE2	9718	ENSG00000145194			Ece2 (MGI:1101356)
chr3	184299097	184309053	3q27.1	3q27.1	606223	PSMD2, S2, TRAP2	Proteasome 26S subunit, non-APTase, 2	PSMD2	5708	ENSG00000175166			Psmd2 (MGI:1096584)
chr3	184314494	184335357	3q27	3q27.1	600495	EIF4G1, EIF4G, PARK18	Eukaryotic translation initiation factor 4 gamma, 1	EIF4G1	1981	ENSG00000114867	amplified in squamous cell lung cancer	{Parkinson disease 18}, 614251 (3), Autosomal dominant	Eif4g1 (MGI:2384784)
chr3	184346184	184361650	3q26	3q27.1	600570	CLCN2, EGMA, ECA2, EGI11, EJM8, LKPAT	Chloride channel-2	CLCN2	1181	ENSG00000114859		{Epilepsy, idiopathic generalized, susceptibility to, 11}, 607628 (3), Autosomal dominant; {Epilepsy, juvenile absence, susceptibility to, 2}, 607628 (3), Autosomal dominant; {Epilepsy, juvenile myoclonic, susceptibility to, 8}, 607628 (3), Autosomal dominant; Leukoencephalopathy with ataxia, 615651 (3), Autosomal recessive	Clcn2 (MGI:105061)
chr3	184361709	184368594	3q28	3q27.1	606023	POLR2H, RPB8	Polymerase II, RNA, subunit H	POLR2H	5437	ENSG00000163882			Polr2h (MGI:2384309)
chr3	184371934	184379687	3q26.3-q27	3q27.1	600044	THPO, MGDF, MPLLG, TPO, THCYT1	Thrombopoietin (megakaryocyte growth and development factor)	THPO	7066	ENSG00000090534		Thrombocythemia 1, 187950 (3), Autosomal dominant	Thpo (MGI:101875)
chr3	184380072	184389834	3q27	3q27.1	603475	CHRD	Chordin	CHRD	8646	ENSG00000090539	near THPO, CLCN2, EIF4G1		Chrd (MGI:1313268)
chr3	184561798	184582407	3q21-qter	3q27.1	601839	EPHB3, ETK2	EPH-like tyrosine kinase-2	EPHB3	2049	ENSG00000182580			Ephb3 (MGI:104770)
chr3	184710366	184712047	3q13	3q27.1	609267	MAGEF1	Melanoma antigen, family F, 1	MAGEF1	64110	ENSG00000177383			
chr3	185190623	185254097	3q27	3q27.2	607037	EHHADH, PBFE, LBFP, FRTS3	Enoyl-Coenzyme A, hydratase/3-hydroxyacyl Coenzyme A dehydrogenase	EHHADH	1962	ENSG00000113790	mutation identified in 1 family	?Fanconi renotubular syndrome 3, 615605 (3), Autosomal dominant	Ehhadh (MGI:1277964)
chr3	185282937	185489093	3q27	3q27.2	604915	MAP3K13, LZK	Mitogen-activated protein kinase kinase kinase 13 (leucine zipper-bearing kinase)	MAP3K13	9175	ENSG00000073803			Map3k13 (MGI:2444243)
chr3	185507044	185552660	3q27-q28	3q27.2	607365	LIPH, LAH2, ARWH2, HYPT7	Lipase H	LIPH	200879	ENSG00000163898		Hypotrichosis 7, 604379 (3), Autosomal recessive; Woolly hair, autosomal recessive 2 with or without hypotrichosis, 604379 (3), Autosomal recessive	Liph (MGI:2388029)
chr3	185586242	185631100	3q27	3q27.2	608261	SENP2, SMT3IP2, AXAM2, KIAA1331	Sentrin-specific protease family, member 2	SENP2	59343	ENSG00000163904			Senp2 (MGI:1923076)
chr3	185643130	185825055	3q28	3q27.2	608289	IGF2BP2, IMP2	Insulin-like growth factor 2 mRNA-binding protein 2	IGF2BP2	10644	ENSG00000073792		{Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3), Autosomal dominant	Igf2bp2 (MGI:1890358)
chr3	185914567	185938135	3q26.2-q27	3q27.2	602719	TRA2B, SFRS10	Splicing factor, arginine/serine-rich, 10 (transformer 2, drosophila, homolog of, beta)	TRA2B	6434	ENSG00000136527			Tra2b (MGI:106016)
chr3	186046316	186109111	3q28	3q27.2	601600	ETV5, ERM	ets variant gene 5 (ets-related molecule)	ETV5	2119	ENSG00000244405			Etv5 (MGI:1096867)
chr3	186147200	186362233	3q27-q28	3q27.2-q27.3	601854	DGKG, DAGK3	Diacylglycerol kinase, gamma, 90-kD	DGKG	1608	ENSG00000058866			Dgkg (MGI:105060)
chr3	186538438	186544450	3q27	3q27.3	123730	CRYGS, CRYG8, CTRCT20	Crystallin, gamma S	CRYGS	1427	ENSG00000213139		Cataract 20, multiple types, 116100 (3), Autosomal dominant	Crygs (MGI:1298216)
chr3	186570675	186585799	3q27.3	3q27.3	611341	DNAJB11, HEDJ, DJ9, ABBP2	DNAJ/HSP40 homolog, subfamily B, member 11	DNAJB11	51726	ENSG00000090520			Dnajb11 (MGI:1915088)
chr3	186612922	186621317	3q27	3q27.3	138680	AHSG, APMR1	Alpha-2HS-glycoprotein	AHSG	197	ENSG00000145192	mutation identified in 1 APMR1 family	?Alopecia-mental retardation syndrome 1, 203650 (3), Autosomal recessive	Ahsg (MGI:107189)
chr3	186635827	186653007	3q27	3q27.3	605954	FETUB	Fetuin B	FETUB	26998	ENSG00000090512			Fetub (MGI:1890221)
chr3	186665951	186678239	3q27	3q27.3	142640	HRG, THPH11	Histidine-rich glycoprotein	HRG	3273	ENSG00000113905		Thrombophilia due to HRG deficiency, 613116 (3), Autosomal dominant; Thrombophilia due to elevated HRG, 613116 (1), Autosomal dominant	
chr3	186717308	186744409	3q27	3q27.3	612358	KNG1, KNG	Kininogen 1	KNG1	3827	ENSG00000113889		[High molecular weight kininogen deficiency], 228960 (3), Autosomal recessive; [Kininogen deficiency], 228960 (3), Autosomal recessive	Kng2,Kng1 (MGI:1097705,MGI:3027157)
chr3	186783571	186789896	3q28	3q27.3	601102	EIF4A2	Eukaryotic translation initiation factor-4A, isoform 2	EIF4A2	1974	ENSG00000156976	previously 18p11.2 by FISH		Eif4a2 (MGI:106906)
chr3	186786674	186786851	3q27.3	3q27.3	611334	SNORA81	Small nucleolar RNA, H/ACA box, 81	SNORA81	677847		in intron 3 of EIF2A		
chr3	186787298	186787432	3q27.3	3q27.3	180647	SNORA63, RNU107, RNE3	Small nucleolar RNA, H/ACA box, 63	SNORA63	6043				
chr3	186789891	186806694	3q27	3q27.3	102577	RFC4	Replication factor C4, 37kD (activator 1, 37kD)	RFC4	5984	ENSG00000163918			Rfc4 (MGI:2146571)
chr3	186842673	186858462	3q27	3q27.3	605441	ADIPOQ, APM1, GBP28, ADIPQTL1	Adipocyte-, C1q-, and collagen domain-containing	ADIPOQ	9370	ENSG00000181092		Adiponectin deficiency, 612556 (3)	Adipoq (MGI:106675)
chr3	186930525	187078552	3q21-q28	3q27.3	109675	SIAT1	Sialyltransferase-1 (beta-galactoside alpha-2,6-sialyltransferase)	ST6GAL1	6480	ENSG00000073849			St6gal1 (MGI:108470)
chr3	187120947	187139522	3q27	3q27.3	607547	RPL39L	Ribosomal protein L39-like	RPL39L	116832	ENSG00000163923			
chr3	187197485	187201464	3q27.3	3q27.3	609137	RTP1	Receptor-transporting protein 1	RTP1	132112	ENSG00000175077			Rtp1 (MGI:2685450)
chr3	187216084	187293528	3q27-q28	3q27.3	600521	MASP1, CRARF, 3MC1	Mannan-binding lectin serine protease-1 (C4/C2 activating component of Ra-reactive factor)	MASP1	5648	ENSG00000127241		3MC syndrome 1, 257920 (3), Autosomal recessive	
chr3	187368379	187371583	3q27	3q27.3	609350	RTP4	Receptor-transporting protein 4	RTP4	64108	ENSG00000136514			Rtp4 (MGI:1915025)
chr3	187668905	187670412	3q28	3q27.3	182450	SST	Somatostatin	SST	6750	ENSG00000157005			Sst (MGI:98326)
chr3	187698258	187715624	3q27.3	3q27.3	609138	RTP2	Receptor-transporting protein 2	RTP2	344892	ENSG00000198471			Rtp2 (MGI:2685451)
chr3	187721376	187745724	3q27	3q27.3	109565	BCL6	B-cell CLL/lymphoma-6	BCL6	604	ENSG00000113916		Lymphoma, B-cell, 109565 (2)	Bcl6 (MGI:107187)
chr3	188152151	188890670	3q28	3q27-q28	600700	LPP	Lipoma-preferred-partner gene	LPP	4026	ENSG00000145012	fused with HMGIC in lipoma; fused with MLL in leukemia	Leukemia, acute myeloid, 601626 (3), Autosomal dominant; Lipoma (3)	Lpp (MGI:2441849)
chr3	188200000	192600000	3q28		612009	CELIAC11	Celiac disease, susceptibility to, 11		100188873		associated with rs1464510	{Celiac disease, susceptibility to, 11}, 612009 (2)	
chr3	188200000	192600000	3q28		614210	LNCR5	Lung cancer susceptibility 5		100682395		associated with rs4488809	{Lung cancer susceptibility 5}, 614210 (2)	
chr3	188688780	188688865	3q28	3q28	612154	MIR28, MIRN28	Micro RNA 28	MIR28	407020				
chr3	189596745	189897278	3q27	3q28	603273	TP63, TP73L, KET, EEC3, SHFM4, LMS, RHS, OFC8	Tumor protein p63 (tumor protein p73-like)	TP63	8626	ENSG00000073282		ADULT syndrome, 103285 (3), Autosomal dominant; Ectrodactyly, ectodermal dysplasia, and cleft lip/palate syndrome 3, 604292 (3), Autosomal dominant; Hay-Wells syndrome, 106260 (3), Autosomal dominant; Limb-mammary syndrome, 603543 (3), Autosomal dominant; Orofacial cleft 8, 129400 (3), Autosomal dominant; Rapp-Hodgkin syndrome, 129400 (3), Autosomal dominant; Split-hand/foot malformation 4, 605289 (3), Autosomal dominant	Trp63 (MGI:1330810)
chr3	189956727	190122436	3q29	3q28	610341	P3H2, LEPREL1, MCVD	Prolyl 3-hydroxylase 2	P3H2	55214	ENSG00000090530		Myopia, high, with cataract and vitreoretinal degeneration, 614292 (3), Autosomal recessive	P3h2 (MGI:2146663)
chr3	190305700	190322445	3q28-q29	3q28	603718	CLDN1, SEMP1, ILVASC	Claudin 1	CLDN1	9076	ENSG00000163347		Ichthyosis, leukocyte vacuoles, alopecia, and sclerosing cholangitis, 607626 (3), Autosomal recessive	Cldn1 (MGI:1276109)
chr3	190387871	190412142	3q27	3q28	603959	CLDN16, PCLN1, HOMG3	Claudin 16 (paracellin 1)	CLDN16	10686	ENSG00000113946		Hypomagnesemia 3, renal, 248250 (3), Autosomal recessive	Cldn16 (MGI:2148742)
chr3	190428654	190449875	3q28	3q28	614786	TMEM207	Transmembrane protein 207	TMEM207	131920	ENSG00000198398			Tmem207 (MGI:2685386)
chr3	190514050	190657196	3q28	3q28	602626	IL1RAP	Interleukin 1 receptor accessory protein	IL1RAP	3556	ENSG00000196083			Il1rap (MGI:104975)
chr3	190843270	190864199	3q28	3q28	614448	GMNC, GEMC1	Geminin coiled-coil domain-containing protein	GMNC	647309	ENSG00000205835			Gmnc (MGI:2685452)
chr3	191199240	191265614	3q26	3q28	610280	OSTN	Osteocrin	OSTN	344901	ENSG00000188729			Ostn (MGI:2677164)
chr3	191329081	191398669	3q28	3q28	611051	CCDC50, C3orf6, DFNA44	Coiled-coil domain-containing protein 50	CCDC50	152137	ENSG00000152492	mutation identified in 1 DFNA44 family	?Deafness, autosomal dominant 44, 607453 (3), Autosomal dominant	
chr3	191461162	191461455	3q28	3q28	615701	PYDC2, POP2	Pyrin domain-containing protein 2	PYDC2	152138	ENSG00000253548			
chr3	192139392	192727598	3q28	3q28-q29	601513	FGF12, FHF1, EIEE47	Fibroblast growth factor-12	FGF12	2257	ENSG00000114279		Epileptic encephalopathy, early infantile, 47, 617166 (3), Autosomal dominant	Fgf12 (MGI:109183)
chr3	192600000	198295559	3q29		609425	DEL3q29, MICRODEL3q29	Chromosome 3q29 microdeletion syndrome				contiguous gene deletion syndrome	Chromosome 3q29 microdeletion syndrome, 609425 (4), Isolated cases	
chr3	192600000	198295559	3q29		611936	DUP3q29, MICRODUP3q29	Chromosome 3q29 microduplication syndrome				contiguous gene duplication syndrome	Chromosome 3q29 microduplication syndrome, 611936 (4), Autosomal dominant	
chr3	193241127	193281638	3q28-q29	3q29	606487	HRASLS	HRAS-like suppressor	HRASLS	57110	ENSG00000127252			Hrasls (MGI:1351473)
chr3	193398966	193593113	3q29	3q29	609556	ATP13A4	ATPase, type 13A4	ATP13A4	84239	ENSG00000127249			Atp13a4 (MGI:1924456)
chr3	193593143	193697810	3q28-q29	3q29	605290	OPA1, NTG, NPG, BERHS, MTDPS14	Optic atrophy 1 gene	OPA1	4976	ENSG00000198836	mutation identified in 1 MTDPS14 family	Behr syndrome, 210000 (3), Autosomal recessive; {Glaucoma, normal tension, susceptibility to}, 606657 (3); ?Mitochondrial DNA depletion syndrome 14 (encephalocardiomyopathic type), 616896 (3); Optic atrophy 1, 165500 (3), Autosomal dominant; Optic atrophy plus syndrome, 125250 (3), Autosomal dominant	Opa1 (MGI:1921393)
chr3	194136141	194138611	3q28-q29	3q29	139605	HES1, HRY	Hairy and enhancer of split, Drosophila, homolog of	HES1	3280	ENSG00000114315			Hes1 (MGI:104853)
chr3	194339764	194351386	3q29	3q29	603104	CPN2	Carboxypeptidase N, polypeptide 2, 83-KD	CPN2	1370	ENSG00000178772	conflicting assignment to chr.8		Cpn2 (MGI:1919006)
chr3	194394820	194399265	3q29	3q29	173511	GP5	Glycoprotein V, platelet	GP5	2814	ENSG00000178732			Gp5 (MGI:1096363)
chr3	194402673	194487005	3q26.32	3q29	610232	ATP13A3, AFURS1	ATPase, type 13A3	ATP13A3	79572	ENSG00000133657			Atp13a3 (MGI:2685387)
chr3	194640787	194672476	3q29	3q29	610780	LSG1	Large subunit GTPase 1, S. cerevisiae, homolog of	LSG1	55341	ENSG00000041802			Lsg1 (MGI:107236)
chr3	195066969	195271165	3q29	3q29	614552	XXYLT1, C3orf21	Xyloside xylosyltransferase 1	XXYLT1	152002	ENSG00000173950			Xxylt1 (MGI:2146443)
chr3	195274735	195443175	3q29	3q29	607766	CENTB2, KIAA0041, ACAP2	Centaurin, beta-2	ACAP2	23527	ENSG00000114331			Acap2 (MGI:1925868)
chr3	195514421	195543400	3q29	3q29	601792	PPP1R2, IPP2	Protein phosphatase-1, regulatory (inhibitor) subunit 2	PPP1R2	5504	ENSG00000184203	pseudogenes on chr. 5 and 6		Ppp1r2 (MGI:1914099)
chr3	195568701	195584204	3q26.2-qter	3q29	107740	APOD	Apolipoprotein D	APOD	347	ENSG00000189058			Apod (MGI:88056)
chr3	195699400	195699496	3q29	3q29	614538	MIR570	Micro RNA 570	MIR570	693155				
chr3	195720881	195733552	3q29	3q29	610360	MUC20	Mucin 20, cell surface-associated	MUC20	200958	ENSG00000176945			Muc20 (MGI:2385039)
chr3	195746764	195811972	3q29	3q29	158372	MUC4	Mucin 4, tracheobronchial	MUC4	4585	ENSG00000145113			
chr3	195863363	195909008	3q29	3q29	606994	TNK2, ACK, ACK1	Tyrosine kinase, non-receptor, 2	TNK2	10188	ENSG00000061938			Tnk2 (MGI:1858308)
chr3	196018693	196082160	3q29	3q29	190010	TFRC, TFR, CD71, IMD46	Transferrin receptor	TFRC	7037	ENSG00000072274		Immunodeficiency 46, 616740 (3), Autosomal recessive	Tfrc (MGI:98822)
chr3	196216511	196233429	3q29	3q29	612084	OSTA	Organic solute transporter, alpha	SLC51A	200931	ENSG00000163959			Slc51a (MGI:2146634)
chr3	196237744	196287751	3q29	3q29	123695	PCYT1A, CTPCT, PCYT1, SMDCRD	Phosphate cytidylyltransferase 1, choline, alpha isoform	PCYT1A	5130	ENSG00000161217		Spondylometaphyseal dysplasia with cone-rod dystrophy, 608940 (3), Autosomal recessive	Pcyt1a (MGI:88557)
chr3	196291218	196318293	3q29	3q29	617353	TCTEX1D2, SRTD17	TCTEX1 domain-containing protein 2	TCTEX1D2	255758	ENSG00000213123		Short-rib thoracic dysplasia 17 with or without polydactyly, 617405 (3), Autosomal recessive	Tctex1d2 (MGI:1913311)
chr3	196347658	196454322	3q29	3q29	616379	UBXN7, KIAA0794	UBX domain protein 7	UBXN7	26043	ENSG00000163960			Ubxn7 (MGI:2146388)
chr3	196468782	196503767	3q29	3q29	612688	RNF168	RING finger protein 168	RNF168	165918	ENSG00000163961		RIDDLE syndrome, 611943 (3), Autosomal recessive	Rnf168 (MGI:1917488)
chr3	196554176	196568673	3q29	3q29	615110	WDR53	WD repeat-containing protein 53	WDR53	348793	ENSG00000185798			Wdr53 (MGI:1916230)
chr3	196568853	196589058	3q29	3q29	609112	FBXO45, FBX45	F-box only protein 45	FBXO45	200933	ENSG00000174013			Fbxo45 (MGI:2447775)
chr3	196639695	196662003	3q29	3q29	615322	NRROS, LRRC33	Negative regulator of oxygen species	NRROS	375387	ENSG00000174004			Nrros (MGI:2445095)
chr3	196706272	196712293	3q29	3q29	615586	CEP19, C3orf34, MOSPGF	Centrosomal protein, 19kD	CEP19	84984	ENSG00000174007	mutation identified in 1 family	Morbid obesity and spermatogenic failure, 615703 (3), Autosomal recessive	Cep19 (MGI:1914244)
chr3	196712373	196736006	3q29	3q29	610276	PIGX	Phosphatidylinositol glycan, class X	PIGX	54965	ENSG00000163964			Pigx (MGI:1919334)
chr3	196739856	196832646	3q29	3q29	605022	PAK2, PAK65	p21-activated kinase 2	PAK2	5062	ENSG00000180370	deleted in 3q29 microdeletion syndrome		Pak2 (MGI:1339984)
chr3	196867855	196934713	3q29	3q29	612845	SENP5	Sentrin-specific protease family, member 5	SENP5	205564	ENSG00000119231			Senp5 (MGI:2443596)
chr3	196932728	196942592	3q29	3q29	605133	NCBP2, CBP20, NIP1	Nuclear CAP-binding protein 2	NCBP2	22916	ENSG00000114503			Ncbp2 (MGI:1915342)
chr3	196946342	196969410	3q29	3q29	611671	PIGZ, SMP3	Phosphatidylinositol glycan, class Z	PIGZ	80235	ENSG00000119227			Pigz (MGI:2443822)
chr3	197001739	197029815	3q29	3q29	155750	MFI2, MAP97	Melanoma-associated antigen p97	MELTF	4241	ENSG00000163975			Meltf (MGI:1353421)
chr3	197042559	197299271	3q29	3q29	601014	DLG1	Discs, large, Drosophila, homolog of, 1	DLG1	1739	ENSG00000075711	deleted in 3q29 microdeletion syndrome		Dlg1 (MGI:107231)
chr3	197509782	197573322	3q29	3q29	603063	BDH1, BDH	3-hydroxybutyrate dehydrogenase 1	BDH1	622	ENSG00000161267			Bdh1 (MGI:1919161)
chr3	197668866	197749726	3q29	3q29	613516	RUBCN, RUBICON, KIAA0226, SCAR15	RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein	RUBCN	9711	ENSG00000145016	mutation identified in 1 family	?Spinocerebellar ataxia, autosomal recessive 15, 615705 (3), Autosomal recessive	Rubcn (MGI:1915160)
chr3	197749552	197784445	3q29	3q29	616933	FYTTD1, UIF	Forty-two-three domain-containing protein 1	FYTTD1	84248	ENSG00000122068			Fyttd1 (MGI:1917955)
chr3	197889074	197960110	3q29	3q29	612477	IQCG	IQ motif-containing protein G	IQCG	84223	ENSG00000114473			Iqcg (MGI:1916957)
chr3	197950189	197955850	3q29-qter	3q29	180468	RPL35A, DBA5	Ribosomal protein L35A	RPL35A	6165	ENSG00000182899	previous assignment to chr.18 in error	Diamond-Blackfan anemia 5, 612528 (3), Autosomal dominant	Rpl35a (MGI:1928894)
chr3	197960199	198043719	3q29	3q29	609380	LMLN	Leishmanolysin-like	LMLN	89782	ENSG00000185621			Lmln (MGI:2444736)
chr4	0	11300000	4p16		600593	CRSA, CRS3	Craniosynostosis, Adelaide type		7885			Craniosynostosis, Adelaide type, 600593 (2), ?Autosomal dominant	
chr4	0	182300000	4p16-q34		603783	INTLQ1	Intelligence quantitative trait locus 1		100462721		associated with D4S2943, MSX1, and D4S1607	{Intelligence QTL1}, 603783 (2)	
chr4	0	4500000	4p16.3		609456	MDCMP	Muscular dystrophy, congenital, merosin-positive		619409		max lod at D4S432	Muscular dystrophy, congenital, merosin-positive, 609456 (2), Autosomal recessive	
chr4	0	50000000	4p		603663	MHW1	Mental health wellness 1		10386		at D4S2949	{Mental health wellness-1}, 603663 (2)	
chr4	0	35800000	4p16-p15		611863	MNDEC	Microtia with nasolacrimal duct imperforation and eye coloboma		100188855		copy number variant (CNV) association	Microtia with nasolacrimal duct imperforation and eye coloboma (1)	
chr4	0	11300000	4p16		611637	PLSA1, PLSA	Primary lateral sclerosis, adult, 1		100240702		max lod at D4S2936	Primary lateral sclerosis, adult, 1, 611637 (2), Autosomal dominant	
chr4	0	27700000	4p16-p15.2		605480	SLEB3	Systemic lupus erythematosus, susceptibility to, 3	SLEB3	64695			{Systemic lupus erythematosus, susceptibility to, 3}, 605480 (2)	
chr4	0	35800000	4p16-p15		612335	SPG38	Spastic paraplegia 38, autosomal dominant	SPG38	100049707		between D4S432 and D4S1599	Spastic paraplegia 38, autosomal dominant, 612335 (2), Autosomal dominant	
chr4	0	4500000	4p16.3		194190	WHS	Wolf-Hirschhorn syndrome				contiguous gene syndrome; critical region 200kb region 1.9Mb from telomere	Wolf-Hirschhorn syndrome, 194190 (4), Isolated cases	
chr4	337778	384863	4p16.3	4p16.3	194648	ZNF141, D4S90, PAPA6	Zinc finger protein-141 (clone pHZ-44)	ZNF141	7700	ENSG00000131127	1 family identified with mutation	?Polydactyly, postaxial, type A6, 615226 (3), Autosomal recessive	
chr4	499199	540195	4p16.3	4p16.3	616918	PIGG, GPI7, MRT53	Phosphatidylinositol glycan anchor biosynthesis class G protein	PIGG	54872	ENSG00000174227		Mental retardation, autosomal recessive 53, 616917 (3), Autosomal recessive	Pigg (MGI:3576484)
chr4	587324	670891	4p16.3	4p16.3	180072	PDE6B, PDEB, RP40, CSNBAD2	Phosphodiesterase-6B, cGMP-specific, rod, beta	PDE6B	5158	ENSG00000133256		Night blindness, congenital stationary, autosomal dominant 2, 163500 (3), Autosomal dominant; Retinitis pigmentosa-40, 613801 (3), Autosomal recessive	Pde6b (MGI:97525)
chr4	672435	674337	4p16.3	4p16.3	601519	ATP5I, ATP5K	ATP synthase, H+ transporting, mitochondrial FO complex, subunit E	ATP5ME	521	ENSG00000169020			
chr4	674198	682032	4p16.3	4p16.3	160782	MYL5	Myosin, light polypeptide-5, regulatory	MYL5	4636	ENSG00000215375			
chr4	705740	770979	4p16.3	4p16.3	617543	PCGF3, RNF3, RNF3A	Polycomb group RING finger protein 3	PCGF3	10336	ENSG00000185619			Pcgf3 (MGI:1916837)
chr4	784956	826156	4p16.3	4p16.3	605032	CPLX1, CPX1	Complexin 1	CPLX1	10815	ENSG00000168993			Cplx1 (MGI:104727)
chr4	849274	932389	4p16	4p16.3	602052	GAK	Cyclin G associated kinase	GAK	2580	ENSG00000178950			Gak (MGI:2442153)
chr4	932386	958655	4p16.3	4p16.3	616660	TMEM175	Transmembrane protein 175	TMEM175	84286	ENSG00000127419			Tmem175 (MGI:1919642)
chr4	958883	973559	4p16.3	4p16.3	601207	DGKQ, DAGK4	Diacylglycerol kinase, theta, 110kD	DGKQ	1609	ENSG00000145214			Dgkq (MGI:102918)
chr4	979072	993439	4p16.3	4p16.3	610130	SLC26A1, SAT1, CAON	Solute carrier family 26 (sulfate transporter), member 1	SLC26A1	10861	ENSG00000145217	mutation identified in 1 CAON patient	?Nephrolithiasis, calcium oxalate, 167030 (3), Autosomal recessive	Slc26a1 (MGI:2385894)
chr4	986996	1004556	4p16.3	4p16.3	252800	IDUA, IDA	Iduronidase, alpha-L-	IDUA	3425	ENSG00000127415		Mucopolysaccharidosis Ih, 607014 (3), Autosomal recessive; Mucopolysaccharidosis Ih/s, 607015 (3), Autosomal recessive; Mucopolysaccharidosis Is, 607016 (3), Autosomal recessive	Idua (MGI:96418)
chr4	1009929	1026897	4p16	4p16.3	605830	FGFRL1	Fibroblast growth factor receptor-like 1	FGFRL1	53834	ENSG00000127418			Fgfrl1 (MGI:2150920)
chr4	1056247	1113793	4p16.3	4p16.3	612041	RNF212, ZHP3	Ring finger protein 212	RNF212	285498	ENSG00000178222		Recombination rate QTL 1, 612042 (3)	Rnf212 (MGI:3645767)
chr4	1166931	1208961	4p16.3	4p16.3	605918	SPON2	Spondin 2	SPON2	10417	ENSG00000159674			Spon2 (MGI:1923724)
chr4	1211439	1253918	4p16	4p16.3	602618	CTBP1, HADDTS	C-terminal binding protein 1	CTBP1	1487	ENSG00000159692		Hypotonia, ataxia, developmental delay, and tooth enamel defect syndrome, 617915 (3), Autosomal dominant	Ctbp1 (MGI:1201685)
chr4	1289850	1340147	4p16.3	4p16.3	606801	MAEA, EMP	Macrophage erythroblast attacher	MAEA	10296	ENSG00000090316			Maea (MGI:1891748)
chr4	1341997	1388048	4p16.3	4p16.3	614632	UVSSA, KIAA1530, UVSS3	UV-stimulated scaffold protein A	UVSSA	57654	ENSG00000163945		UV-sensitive syndrome 3, 614640 (3), Autosomal recessive	Uvssa (MGI:1918351)
chr4	1391551	1395993	4p16.3	4p16.3	610203	CRIPAK, FLJ3443	Cysteine-rich inhibitor of PAK1	CRIPAK	285464	ENSG00000163945			
chr4	1402931	1406441	4p16.3	4p16.3	617869	NKX1-1, SAX2	NK1 homeobox 1	NKX1-1	54729	ENSG00000235608			
chr4	1574054	1684312	4p16.3	4p16.3	617229	FAM53A, DNTNP	Family with sequence similarity 53, member A	FAM53A	152877	ENSG00000174137			Fam53a (MGI:1919225)
chr4	1692730	1715875	4p16.3	4p16.3	602422	SLBP, HBP	Histone stem-loop binding protein	SLBP	7884	ENSG00000163950			Slbp (MGI:108402)
chr4	1715951	1721372	4p16.3	4p16.3	615975	TMEM129	Transmembrane protein 129	TMEM129	92305	ENSG00000168936			Tmem129 (MGI:1915616)
chr4	1721489	1745177	4p16.3	4p16.3	605303	TACC3	Transforming, acidic, coiled-coil-containing protein 3	TACC3	10460	ENSG00000013810			Tacc3 (MGI:1341163)
chr4	1793298	1808871	4p16.3	4p16.3	134934	FGFR3, ACH	Fibroblast growth factor receptor-3	FGFR3	2261	ENSG00000068078		Achondroplasia, 100800 (3), Autosomal dominant; Bladder cancer, somatic, 109800 (3); CATSHL syndrome, 610474 (3), Autosomal recessive, Autosomal dominant; Cervical cancer, somatic, 603956 (3); Colorectal cancer, somatic, 114500 (3); Crouzon syndrome with acanthosis nigricans, 612247 (3), Autosomal dominant; Hypochondroplasia, 146000 (3), Autosomal dominant; LADD syndrome, 149730 (3), Autosomal dominant; Muenke syndrome, 602849 (3), Autosomal dominant; Nevus, epidermal, somatic, 162900 (3); SADDAN, 616482 (3), Autosomal dominant; Spermatocytic seminoma, somatic, 273300 (3); Thanatophoric dysplasia, type I, 187600 (3), Autosomal dominant; Thanatophoric dysplasia, type II, 187601 (3), Autosomal dominant	Fgfr3 (MGI:95524)
chr4	1811478	1856246	4p16.3	4p16.3	604407	LETM1	Leucine zipper/EF-hand-containing transmembrane protein 1	LETM1	3954	ENSG00000168924			Letm1 (MGI:1932557)
chr4	1871395	1982206	4p16.3	4p16.3	602952	NSD2, WHSC1, MMSET	Nuclear receptor-binding SET domain protein 2	NSD2	7468	ENSG00000109685			Nsd2 (MGI:1276574)
chr4	1982713	2041913	4p16.3	4p16.3	606026	WHSC2	WHS candidate 2 gene	NELFA	7469	ENSG00000185049			Nelfa (MGI:1346098)
chr4	2035609	2043969	4p16.3	4p16.3	614690	C4orf48	chromosome 4 open reading frame 48	C4orf48	401115	ENSG00000243449			
chr4	2059511	2069088	4p16.3	4p16.3	610647	NAT8L, CML3, NACED	N-acetyltransferase 8-like	NAT8L	339983	ENSG00000185818	mutation identified in 1 patient	?N-acetylaspartate deficiency, 614063 (3), Autosomal recessive	Nat8l (MGI:2447776)
chr4	2071957	2242163	4p16.2	4p16.3	610887	POLN	Polymerase, DNA, nu	POLN	353497	ENSG00000130997			
chr4	2231835	2242163	4p16.3	4p16.3	613430	HAUS3, DGT3, C4orf15	HAUS augmin-like complex, subunit 3	HAUS3	79441	ENSG00000214367			Haus3 (MGI:2387633)
chr4	2269584	2418697	4p16	4p16.3	614176	ZFYVE28, LST2, KIAA1643	Zinc finger FYVE domain-containing protein 28	ZFYVE28	57732	ENSG00000159733			Zfyve28 (MGI:2684992)
chr4	2469067	2515858	4p16.3	4p16.3	602850	RNF4	RING finger protein-4	RNF4	6047	ENSG00000063978			Rnf4 (MGI:1201691)
chr4	2741659	2756375	4p16.3	4p16.3	610669	TNIP2, ABIN2, FLIP1	TNFAIP3-interacting protein 2	TNIP2	79155	ENSG00000168884			Tnip2 (MGI:2386643)
chr4	2793022	2841095	4p16.3	4p16.3	602104	SH3BP2, CRPM	SH3-domain binding protein 2	SH3BP2	6452	ENSG00000087266		Cherubism, 118400 (3), Autosomal dominant	Sh3bp2 (MGI:1346349)
chr4	2843856	2930075	4p16.3	4p16.3	102680	ADD1	Adducin-1, alpha	ADD1	118	ENSG00000087274		{Hypertension, essential, salt-sensitive}, 145500 (3), Multifactorial	Add1 (MGI:87918)
chr4	2930555	2934858	4p16.3	4p16.3	610977	TETRAN, TPO1	Tetracycline transporter-like protein	MFSD10	10227	ENSG00000109736			Mfsd10 (MGI:1915544)
chr4	2937935	2963505	4p16.3	4p16.3	611526	NOP14, NOL14, RES425	Nop14, S. cerevisiae, homolog of	NOP14	8602	ENSG00000087269			Nop14 (MGI:1922666)
chr4	2963503	3040759	4p16.3	4p16.3	137026	GRK4, GPRK2L, GPRK4	G protein-coupled receptor kinase 4	GRK4	2868	ENSG00000125388			Grk4 (MGI:95801)
chr4	3074680	3243959	4p16.3	4p16.3	613004	HTT, HD, IT15, LOMARS	Huntingtin	HTT	3064	ENSG00000197386	distal to D4S10	Huntington disease, 143100 (3), Autosomal dominant; Lopes-Maciel-Rodan syndrome, 617435 (3), Autosomal recessive	Htt (MGI:96067)
chr4	3292977	3439912	4p16.2	4p16.3	602512	RGS12	Regulator of G protein signaling 12	RGS12	6002	ENSG00000159788			Rgs12 (MGI:1918979)
chr4	3441932	3449494	4p16	4p16.3	604552	HGFAC, HGFA	Hepatocyte growth factor activator	HGFAC	3083	ENSG00000109758			Hgfac (MGI:1859281)
chr4	3463305	3501475	4p16.2	4p16.3	610285	DOK7, C4orf25, CMS10	Downstream of tyrosine kinase 7	DOK7	285489	ENSG00000175920	mutation identified in 1 FADS family	?Fetal akinesia deformation sequence, 208150 (3), Autosomal recessive; Myasthenic syndrome, congenital, 10, 254300 (3), Autosomal recessive	Dok7 (MGI:3584043)
chr4	3503596	3532496	4p16.3	4p16.3	104225	LRPAP1, A2MRAP, MYP23	Low density lipoprotein-related protein-associated protein 1 (alpha-2-macroglobulin receptor-associated protein 1)	LRPAP1	4043	ENSG00000163956		Myopia 23, autosomal recessive, 615431 (3), Autosomal recessive	Lrpap1 (MGI:96829)
chr4	3766568	3768525	4p16.1	4p16.3	104250	ADRA2C, ADRA2L2	Adrenergic, alpha-2C-, receptor	ADRA2C	152	ENSG00000184160	linked to D4S10	{Congestive heart failure and beta-blocker response, modifier of} (3)	Adra2c (MGI:87936)
chr4	4188725	4226893	4p16.2	4p16.3	607806	OTOP1	Otopetrin 1	OTOP1	133060	ENSG00000163982			Otop1 (MGI:2388363)
chr4	4267700	4290194	4p16.3	4p16.3	617684	LYAR	Ly1 antibody-reactive protein, mouse, homolog of	LYAR	55646	ENSG00000145220			Lyar (MGI:107470)
chr4	4290196	4321785	4p16.3	4p16.3	616238	ZBTB49, ZNF509	Zinc finger- and BTB domain-containing protein 49	ZBTB49	166793	ENSG00000168826			Zbtb49 (MGI:1922329)
chr4	4386255	4419057	4p16.3	4p16.3	607645	D4S234E, D4S234	D4S234E gene	NSG1	27065	ENSG00000168824			Nsg1 (MGI:109149)
chr4	4859664	4863935	4p16.1	4p16.2	142983	MSX1, HOX7, HYD1, OFC5, STHAG1, ECTD3	Muscle segment homeo box, Drosophila, homolog of, 1 (homeo box 7)	MSX1	4487	ENSG00000163132		Ectodermal dysplasia 3, Witkop type, 189500 (3), Autosomal dominant; Orofacial cleft 5, 608874 (3); Tooth agenesis, selective, 1, with or without orofacial cleft, 106600 (3), Autosomal dominant	Msx1 (MGI:97168)
chr4	5014585	5019469	4p16.2	4p16.2	607930	CYTL1, C17	Cytokine-like protein 1	CYTL1	54360	ENSG00000170891			Cytl1 (MGI:2684993)
chr4	5562407	5709547	4p16	4p16.2	607261	EVC2, LBN, WAD	EVC2 (limbin) gene	EVC2	132884	ENSG00000173040		Ellis-van Creveld syndrome, 225500 (3), Autosomal recessive; Weyers acrofacial dysostosis, 193530 (3), Autosomal dominant	Evc2 (MGI:1915775)
chr4	5711196	5829042	4p16	4p16.2	604831	EVC	EVC gene	EVC	2121	ENSG00000072840	mutation identified in 1 WAD patient	Ellis-van Creveld syndrome, 225500 (3), Autosomal recessive; ?Weyers acrofacial dysostosis, 193530 (3), Autosomal dominant	Evc (MGI:1890596)
chr4	5820763	5893082	4p16.1-p15	4p16.2	602462	CRMP1, DPYSL1, DRP1	Collapsin response mediator protein-1	CRMP1	1400	ENSG00000072832			Crmp1 (MGI:107793)
chr4	6024924	6200590	4p16.2	4p16.1	611195	JAKMIP1, JAMIP1, MARLIN1	Janus kinase and microtubule-interacting protein 1	JAKMIP1	152789	ENSG00000152969			Jakmip1 (MGI:1923321)
chr4	6260367	6303264	4p16.1	4p16.1	606201	WFS1, WFRS, WFS, DFNA6, DFNA14, DFNA38, WFSL, CTRCT41	Wolframin	WFS1	7466	ENSG00000109501	mutation identified in 1 CTRCT41 family	?Cataract 41, 116400 (3), Autosomal dominant; Deafness, autosomal dominant 6/14/38, 600965 (3), Autosomal dominant; {Diabetes mellitus, noninsulin-dependent, association with}, 125853 (3), Autosomal dominant; Wolfram syndrome 1, 222300 (3), Autosomal recessive; Wolfram-like syndrome, autosomal dominant, 614296 (3), Autosomal dominant	Wfs1 (MGI:1328355)
chr4	6320577	6563599	4p16	4p16.1	605997	PPP2R2C, PR52	Protein phosphatase 2A, regulatory subunit B, gamma isoform	PPP2R2C	5522	ENSG00000074211			Ppp2r2c (MGI:2442660)
chr4	6640090	6642744	4p16.1	4p16.1	616905	MRFAP1, PAM14, PGR1`	MORF4 family- associated protein 1	MRFAP1	93621	ENSG00000179010			Mrfap1 (MGI:1914818)
chr4	6693838	6697169	4p16	4p16.1	600614	S100P	S100 calcium-binding protein P	S100P	6286	ENSG00000163993			
chr4	6716114	6717659	4p16.1	4p16.1	605695	BLOC1S4, BLOS4, CNO	Biogenesis of lysosome-related organelles complex 1, subunit 4	BLOC1S4	55330	ENSG00000186222			Bloc1s4 (MGI:1929230)
chr4	6909443	7033117	4p16.1	4p16.1	614855	TBC1D14, KIAA1322	TBC1 domain family, member 14	TBC1D14	57533	ENSG00000132405			Tbc1d14 (MGI:1098708)
chr4	7043428	7057951	4p16.1	4p16.1	608790	TADA2B, ADA2B	Transcriptional adaptor 2B	TADA2B	93624	ENSG00000173011			Tada2b (MGI:3035274)
chr4	7058894	7068209	4p16	4p16.1	606173	GRPEL1, HMGE	GrpE, E. coli, homolog of	GRPEL1	80273	ENSG00000109519			Grpel1 (MGI:1334417)
chr4	7192606	7742836	4p16.1	4p16.1	606284	SORCS2, KIAA1329	SORCS receptor 2	SORCS2	57537	ENSG00000184985			Sorcs2 (MGI:1932289)
chr4	7758712	7939925	4p16.1	4p16.1	608252	AFAP1, AFAP, AFAP110	Actin filament-associated protein 1	AFAP1	60312	ENSG00000196526			Afap1 (MGI:1917542)
chr4	7965309	8158831	4p16	4p16.1	612544	ABLIM2, KIAA1808	Actin-binding LIM protein family, member 2	ABLIM2	84448	ENSG00000163995			Ablim2 (MGI:2385758)
chr4	8005300	8005380	Chr.4	4p16.1	613185	MIR95, MIRN95	Micro RNA 95	MIR95	407052				
chr4	8269711	8307110	4p16.1	4p16.1	608785	HTRA3, PRSP	HTRA serine peptidase 3	HTRA3	94031	ENSG00000170801			Htra3 (MGI:1925808)
chr4	8366262	8440724	4p15.3	4p16.1	603402	ACOX3	Acyl-coenzyme A oxidase 3, pristanoyl	ACOX3	8310	ENSG00000087008			Acox3 (MGI:1933156)
chr4	8440773	8512530	4p15	4p16.1	614309	METTL19	Methyltransferase-like 19	TRMT44	152992	ENSG00000155275			Trmt44 (MGI:1926140)
chr4	8580236	8590022	4p16.1	4p16.1	606921	GPR78	G protein-coupled receptor 78	GPR78	27201	ENSG00000155269			
chr4	8592659	8619760	4p16.1	4p16.1	603105	CPZ	Carboxypeptidase Z	CPZ	8532	ENSG00000109625			Cpz (MGI:88487)
chr4	8846075	8871816	4p16.1	4p16.1	142992	HMX1, H6	Homeo box (H6 family) 1	HMX1	3166	ENSG00000215612		Oculoauricular syndrome, 612109 (3), Autosomal recessive	Hmx1 (MGI:107178)
chr4	9358381	9359973	4p16.1	4p16.1	607011	USP17L9P, USP17	Ubiquitin-specific protease 17-like family member 9, pseudogene	USP17L9P	391627				
chr4	9771124	10040247	4p16-p15.3	4p16.1	606142	SLC2A9, GLUT9, UAQTL2	Solute carrier family 2 (facilitated glucose transporter), member 9	SLC2A9	56606	ENSG00000109667		Hypouricemia, renal, 2, 612076 (3), Autosomal recessive, Autosomal dominant; {Uric acid concentration, serum, QTL 2}, 612076 (3), Autosomal recessive, Autosomal dominant	Slc2a9 (MGI:2152844)
chr4	9781633	9784008	4p16.1-p15.3	4p16.1	126453	DRD5, DRD1B, DRD1L2	Dopamine receptor D5	DRD5	1816	ENSG00000169676	pseudogenes on 2p11 and 1q21	{Attention deficit-hyperactivity disorder, susceptibility to}, 143465 (3), Autosomal dominant; {Blepharospasm, primary benign}, 606798 (3), Isolated cases; Dystonia, primary cervical (3)	Drd5 (MGI:94927)
chr4	10074338	10117033	4p	4p16.1	604734	WDR1	WD repeat-containing protein 1	WDR1	9948	ENSG00000071127			Wdr1 (MGI:1337100)
chr4	10439879	10457422	4p16.1	4p16.1	617734	ZNF518B, KIAA1729	Zinc finger protein 518B	ZNF518B	85460	ENSG00000178163			Zfp518b (MGI:2140750)
chr4	10486404	10734852	4p16.1	4p16.1	611434	CLNK, MIST	Cytokine-dependent hematopoietic cell linker	CLNK	116449	ENSG00000109684			Clnk (MGI:1351468)
chr4	11300000	41200000	4p15-p14		608410	BMIQ7	Body mass index quantitative trait locus 7		404683			{Obesity, susceptibility to, BMIQ7}, 608410 (2)	
chr4	11300000	35800000	4p15		607221	EPPS	Epilepsy, partial, with pericentral spikes		266789			Epilepsy, partial, with pericentral spikes, 607221 (2)	
chr4	11300000	21300000	4p15.3		604802	HDL3, HLN2	Huntington disease-like 3		53369			Huntington disease-like 3, 604802 (2), Autosomal recessive	
chr4	11300000	21300000	4p15.3		612226	STQTL13	Stature quantitative trait locus 13		100270796		associated with rs16896068	{Stature QTL 13}, 612226 (2)	
chr4	11393149	11434397	4p15.33	4p15.33	603244	HS3ST1, 3OST, 3OST1	Heparan sulfate (glucosamine)3-O-sulfotransferase 1	HS3ST1	9957	ENSG00000002587			Hs3st1 (MGI:1201606)
chr4	13367722	13484364	4p15.33	4p15.33	612994	RAB28, CORD18	Ras-associated protein 28	RAB28	9364	ENSG00000157869		Cone-rod dystrophy 18, 615374 (3), Autosomal recessive	Rab28 (MGI:1917285)
chr4	13540829	13544489	4p16.1	4p15.33	602183	NKX3-2, BAPX1, SMMD	Bagpipe homeo box, Drosophila, homolog of	NKX3-2	579	ENSG00000109705		Spondylo-megaepiphyseal-metaphyseal dysplasia, 613330 (3), Autosomal recessive	Nkx3-2 (MGI:108015)
chr4	13568737	13627720	4p16.1	4p15.33	616746	BOD1L1, FAM44A	BOD1-like protein 1	BOD1L1	259282	ENSG00000038219			Bod1l (MGI:2444804)
chr4	15002425	15070152	4q32-q33	4p15.32	610605	CPEB2	Cytoplasmic polyadenylation element-binding protein 2	CPEB2	132864	ENSG00000137449			Cpeb2 (MGI:2442640)
chr4	15468659	15601970	4p15.3	4p15.32	612013	CC2D2A, KIAA1345, MKS6	Coiled-coil and C2 domains-containing protein 2A	CC2D2A	57545	ENSG00000048342		COACH syndrome, 216360 (3), Autosomal recessive; Joubert syndrome 9, 612285 (3), Autosomal recessive; Meckel syndrome 6, 612284 (3), Autosomal recessive	Cc2d2a (MGI:1924487)
chr4	15604383	15681543	4p15.33	4p15.32	605655	FBXL5, FBL5	F-box and leucine-rich repeat protein 5	FBXL5	26234	ENSG00000118564			Fbxl5 (MGI:2152883)
chr4	15701865	15774177	4p15.32	4p15.32	600387	BST1	Bone marrow stromal cell antigen 1	BST1	683	ENSG00000109743	previously assigned to 14q32.3		Bst1 (MGI:105370)
chr4	15778264	15853242	4p15	4p15.32	107270	CD38	CD38 antigen (p45); ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase	CD38	952	ENSG00000004468			Cd38 (MGI:107474)
chr4	15935568	15938739	4p15.3	4p15.32	607737	FGFBP1, FGFBP, HBP17	Fibroblast growth factor-binding protein 1	FGFBP1	9982	ENSG00000137440			Fgfbp1 (MGI:1096350)
chr4	15960239	15963235	4p16	4p15.32	607713	KSP37	Killer-specific secretory protein, 37kD	FGFBP2	83888	ENSG00000137441			
chr4	15968225	16084058	4p15.3	4p15.32	604365	PROM1, PROML1, AC133, RP41, CORD12, CD133, MCDR2, STGD4	Prominin 1	PROM1	8842	ENSG00000007062		Cone-rod dystrophy 12, 612657 (3); Macular dystrophy, retinal, 2, 608051 (3), Autosomal dominant; Retinitis pigmentosa 41, 612095 (3), Autosomal recessive; Stargardt disease 4, 603786 (3)	Prom1 (MGI:1100886)
chr4	16160504	16226537	4p15.32	4p15.32	612758	TAPT1, CMVFR, OCLSBG	Transmembrane anterior posterior transformation 1	TAPT1	202018	ENSG00000169762		Osteochondrodysplasia, complex lethal, Symoens-Barnes-Gistelinck type, 616897 (3), Autosomal recessive	Tapt1 (MGI:2683537)
chr4	16501533	16898808	4p15	4p15.32	603450	LDB2, CLIM1	LIM domain-binding factor-2	LDB2	9079	ENSG00000169744			Ldb2 (MGI:894670)
chr4	17486392	17512233	4p15.31	4p15.32	612676	QDPR, DHPR	Quinoid dihydropteridine reductase	QDPR	5860	ENSG00000151552		Hyperphenylalaninemia, BH4-deficient, C, 261630 (3), Autosomal recessive	Qdpr (MGI:97836)
chr4	17577303	17607966	4p11-q12	4p15.32	170250	PEPS	Peptidase S	LAP3	51056	ENSG00000002549			Lap3 (MGI:1914238)
chr4	17614627	17625627	4p15.32	4p15.32	610311	MED28, EG1, MAGICIN	Mediator complex subunit 28	MED28	80306	ENSG00000118579			Med28 (MGI:1914249)
chr4	17810812	17844864	4p15.3	4p15.31	606280	NCAPG, CAPG	Non-SMC condensin I complex subunit G	NCAPG	64151	ENSG00000109805			Ncapg (MGI:1930197)
chr4	17841198	18023286	4p15.3	4p15.31	611799	LCORL, MLR1	Ligand-dependent nuclear receptor corepressor-like protein	LCORL	254251	ENSG00000178177			Lcorl (MGI:2651932)
chr4	20251904	20620560	4p15.2	4p15.31	603746	SLIT2	Slit, Drosophila, homolog of, 2	SLIT2	9353	ENSG00000145147			Slit2 (MGI:1315205)
chr4	20528274	20528383	4p15.31	4p15.31	616770	MIR218-1	Micro RNA 218-1	MIR218-1	407000		within intron of SLIT2		
chr4	20728519	21948750	4p15.3	4p15.3-p15.2	608182	KCNIP4, KCHIP4	Kv channel-interacting protein 4	KCNIP4	80333	ENSG00000185774			Kcnip4 (MGI:1933131)
chr4	22387373	22516057	4p15.2	4p15.2	612303	ADGRA3, GPR125	Adhesion G protein-coupled receptor A3	ADGRA3	166647	ENSG00000152990			Adgra3 (MGI:1917943)
chr4	22692913	22819574	4p15.31	4p15.2	606619	GBA3, CBGL1	Glucosidase, beta, acid 3	GBA3	57733	ENSG00000249948			
chr4	23792020	24472828	4p15.1	4p15.2	604517	PPARGC1A, PPARGC1	Peroxisome proliferator-activated receptor-gamma, coactivator 1, alpha	PPARGC1A	10891	ENSG00000109819			Ppargc1a (MGI:1342774)
chr4	24527463	24584560	4p15.3	4p15.2	603403	DHX15, DDX15, DBP1, HRH2	DEAH (Asp-Glu-Ala-His) box polypeptide 15	DHX15	1665	ENSG00000109606			Dhx15 (MGI:1099786)
chr4	24795462	24800844	4p15.3-p15.1	4p15.2	185490	SOD3	Superoxide dismutase-3, extracellular	SOD3	6649	ENSG00000109610		[Superoxide dismutase, elevated extracellular] (3)	Sod3 (MGI:103181)
chr4	24991959	25030791	4p15.2	4p15.2	608301	LGI2, KIAA1916	Leucine-rich gene, glioma-inactivated, 2	LGI2	55203	ENSG00000153012			Lgi2 (MGI:2180196)
chr4	25120004	25160581	4p15.2	4p15.2	613009	SEPSECS, SLA, LP, PCH2D	O-phosphoserine tRNA-selenocysteine tRNA synthase	SEPSECS	51091	ENSG00000109618		Pontocerebellar hypoplasia type 2D, 613811 (3), Autosomal recessive	Sepsecs (MGI:1098791)
chr4	25234030	25279208	4p15.2	4p15.2	612101	PI4K2B	Phosphatidylinositol 4-kinase, type 2, beta	PI4K2B	55300	ENSG00000281028			Pi4k2b (MGI:1914323)
chr4	25312773	25373175	4p15.2	4p15.2	611792	ZCCHC4	Zinc finger CCHC domain-containing protein 4	ZCCHC4	29063	ENSG00000168228			Zcchc4 (MGI:1926046)
chr4	25377225	25418497	4p15.2	4p15.2	606947	ANAPC4, APC4	Anaphase-promoting complex, subunit 4	ANAPC4	29945	ENSG00000053900			Anapc4 (MGI:1098673)
chr4	25655812	25678747	4p15.31-p15.2	4p15.2	604217	SLC34A2	Solute carrier family 34 (sodium/phosphate cotransporter), member 2	SLC34A2	10568	ENSG00000157765		Pulmonary alveolar microlithiasis, 265100 (3), Autosomal recessive	Slc34a2 (MGI:1342284)
chr4	25914191	25929878	4p15.2	4p15.2	617465	SMIM20, MITRAC7, C4orf52	Small integral membrane protein 20	SMIM20	389203	ENSG00000250317			Smim20 (MGI:1913528)
chr4	26163488	26435130	4p15.2	4p15.2	147183	RBPJ, RBPSUH, IGKJRB1, AOS3	Recombination signal-binding protein 1 for kappa J region	RBPJ	3516	ENSG00000168214	pseudogenes at 9q13, 9p13, and 3q25	Adams-Oliver syndrome 3, 614814 (3), Autosomal dominant	Rbpj (MGI:96522)
chr4	26481395	26490419	4p15.2-p15.1	4p15.2	118444	CCKAR	Cholecystokinin A receptor	CCKAR	886	ENSG00000163394			Cckar (MGI:99478)
chr4	26860690	27025380	4p15.1	4p15.2	610841	STIM2, KIAA1482	Stromal interaction molecule 2	STIM2	57620	ENSG00000109689			Stim2 (MGI:2151156)
chr4	27700000	58500000	4p15.1-q12		607107	NPC1, NPCA1	Nasopharyngeal carcinoma 1		257641		?associated with acyl-CoA thioesterase 7-like	{Nasopharyngeal carcinoma 1}, 607107 (2)	
chr4	30719860	31146800	4p15	4p15.1	602988	PCDH7, BHPCDH	Protocadherin-7	PCDH7	5099	ENSG00000169851			Pcdh7 (MGI:1860487)
chr4	35800000	41200000	4p14		614991	UCH1LAS	Ubiquitin carboxyl-terminal esterase L1, antisense		101180899				
chr4	36005185	36244832	4p14	4p14	606645	ARAP2, CENTD1, KIAA0580	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2	ARAP2	116984	ENSG00000047365			Arap2 (MGI:2684416)
chr4	36281592	36347510	4p14	4p14	616979	DTHD1	Death domain-containing protein 1	DTHD1	401124	ENSG00000197057			Dthd1 (MGI:4937018)
chr4	37590799	37686402	4p14	4p14	611212	RELL1	Relt-like 1	RELL1	768211	ENSG00000181826			Rell1 (MGI:2140767)
chr4	37826659	37862937	4p14-q12	4p14	172000	PGM2	Phosphoglucomutase-2	PGM2	55276	ENSG00000169299			Pgm1 (MGI:97564)
chr4	37891083	38139174	4p15.1-q21	4p14	609850	TBC1D1, KIAA1108	TBC1 domain family, member 1	TBC1D1	23216	ENSG00000065882			Tbc1d1 (MGI:1889508)
chr4	37960434	37961009	4p12	4p14	604231	PTTG2	Pituitary tumor-transforming gene 2	PTTG2	10744	ENSG00000250254			
chr4	38664078	38701507	4p14	4p14	609392	KLF3, BKLF	Kruppel-like factor 3	KLF3	51274	ENSG00000109787			Klf3 (MGI:1342773)
chr4	38791054	38806261	4p14	4p14	601194	TLR1, TIL. LPRS5	Toll-like receptor-1	TLR1	7096	ENSG00000174125		{Leprosy, protection against}, 613223 (3); {Leprosy, susceptibility to, 5}, 613223 (3)	Tlr1 (MGI:1341295)
chr4	38823679	38857766	4p14	4p14	605403	TLR6	Toll-like receptor 6	TLR6	10333	ENSG00000174130			Tlr6 (MGI:1341296)
chr4	38868031	38868126	4p14	4p14	615469	MIR574, MIR574-3p	Micro RNA 574	MIR574	693159				
chr4	39044673	39143100	4p15.1-p13	4p14	608064	KLHL5	Kelch-like 5	KLHL5	51088	ENSG00000109790			Klhl5 (MGI:1919028)
chr4	39182403	39285809	4p14-p11	4p14	608151	WDR19, SRTD5, ATD5, NPHP13, CED4	WD repeat-containing protein 19	WDR19	57728	ENSG00000157796	mutation identified in 1 CED4 family and 1 SRTD5 family	?Cranioectodermal dysplasia 4, 614378 (3), Autosomal recessive; Nephronophthisis 13, 614377 (3), Autosomal recessive; Senior-Loken syndrome 8, 616307 (3), Autosomal recessive; ?Short-rib thoracic dysplasia 5 with or without polydactyly, 614376 (3), Autosomal recessive	Wdr19 (MGI:2443231)
chr4	39287448	39366380	4p14-p13	4p14	102579	RFC1, RECC1	Replication factor C1, 145kD (activator 1, 145kD)	RFC1	5981	ENSG00000035928			Rfc1 (MGI:97891)
chr4	39406852	39451532	4p14	4p14	611135	KLB, BKL	Klotho, beta	KLB	152831	ENSG00000134962			Klb (MGI:1932466)
chr4	39454123	39458947	4p13	4p14	603686	RPL9	Ribosomal protein L9	RPL9	6133	ENSG00000163682	pseudogene on Xpter-p21		Rpl9 (MGI:1298373)
chr4	39459021	39477652	4p14	4p14	607031	LIAS, PDHLD, HGCLAS	Lipoic acid synthase	LIAS	11019	ENSG00000121897		Hyperglycinemia, lactic acidosis, and seizures, 614462 (3), Autosomal recessive	Lias (MGI:1934604)
chr4	39498754	39527597	4p15.1	4p14	603370	UGDH, UDPGDH	UDP-glucose dehydrogenase	UGDH	7358	ENSG00000109814			Ugdh (MGI:1306785)
chr4	39698043	39782791	4p14	4p14	602846	HIP2	Huntingtin-interacting protein-2	UBE2K	3093	ENSG00000078140			Ube2k (MGI:1858216)
chr4	39822862	39977955	4p14	4p14	613200	PDS5A, KIAA0648, SCC112	PDS5, regulator of cohesion maintenance, S. Cerevisiae, homolog of, A	PDS5A	23244	ENSG00000121892			Pds5a (MGI:1918771)
chr4	40042916	40057198	4p14-p11	4p14	611963	LOC344967	Acyl-CoA thioesterase 7-like		344967		?associated with nasopharyngeal carcinoma		
chr4	40191010	40244763	4p13	4p14	602037	ARHH, TTF	Ras homolog gene family, member H	RHOH	399	ENSG00000168421			Rhoh (MGI:1921984)
chr4	40335328	40355216	4p15.1-p14	4p14	605116	CHRNA9	Cholinergic receptor, neuronal nicotinic, alpha polypeptide 9	CHRNA9	55584	ENSG00000174343			Chrna9 (MGI:1202403)
chr4	40749873	40815728	4p14	4p14	617185	NSUN7	NOP2/SUN RNA methyltransferase family, member 7	NSUN7	79730	ENSG00000179299			Nsun7 (MGI:1918168)
chr4	40810026	41216713	4p14	4p14-p13	602710	APBB2, FE65L1	Amyloid beta A4 precursor protein-binding, family B, member 2 (Fe65-like 1)	APBB2	323	ENSG00000163697			Apbb2 (MGI:108405)
chr4	41200000	87100000	4p13-q21		605841	NRCLP2	Narcolepsy 2		100918		max lod at D4S2987	Narcolepsy 2, 605841 (2)	
chr4	41256880	41268428	4p14	4p13	191342	UCHL1, PARK5, SPG79, NDGOA	Ubiquitin C-terminal esterase L1	UCHL1	7345	ENSG00000154277	mutation identified in 1 PARK5 family	{?Parkinson disease 5, susceptibility to}, 613643 (3); Spastic paraplegia 79, autosomal recessive, 615491 (3), Autosomal recessive	Uchl1 (MGI:103149)
chr4	41359606	41700043	4p13	4p13	617750	LIMCH1, LMO7B	LIM and calponin homology domains-containing protein 1	LIMCH1	22998	ENSG00000064042			Limch1 (MGI:1924819)
chr4	41744081	41748969	4p12	4p13	603851	PHOX2B, NBPHOX, PMX2B, NBLST2, CCHS	Paired mesoderm homeo box 2B	PHOX2B	8929	ENSG00000109132		Central hypoventilation syndrome, congenital, with or without Hirschsprung disease, 209880 (3), Autosomal dominant; Neuroblastoma with Hirschsprung disease, 613013 (3); {Neuroblastoma, susceptibility to, 2}, 613013 (3)	Phox2b (MGI:1100882)
chr4	41990501	42087533	4p13	4p13	604604	SLC30A9, C4orf1, HUEL, BILAPES	Solute carrier family 30 (zinc transporter), member 9	SLC30A9	10463	ENSG00000014824	mutation identified in 1 BILAPES family	?Birk-Landau-Perez syndrome, 617595 (3), Autosomal recessive	Slc30a9 (MGI:1923690)
chr4	42397323	42402486	4p13	4p13	617325	SHISA3	Shisa family, member 3	SHISA3	152573	ENSG00000178343			Shisa3 (MGI:3041225)
chr4	42893265	43030657	4p13	4p13	613283	GRXCR1	Glutaredoxin, cysteine-rich, 1	GRXCR1	389207	ENSG00000215203		Deafness, autosomal recessive 25, 613285 (3), Autosomal recessive	Grxcr1 (MGI:3577767)
chr4	44678394	44700680	4p12	4p12	617064	GUF1, EF4, EIEE40	GTPase, S. cerevisiae, homolog of	GUF1	60558	ENSG00000151806	mutation identified in 1 EIEE40 family	?Epileptic encephalopathy, early infantile, 40, 617065 (3), Autosomal recessive	Guf1 (MGI:2140726)
chr4	44701794	44726633	4p13	4p12	613222	GNPDA2, GNP2	Glucosamine-6-phosphate deaminase 2	GNPDA2	132789	ENSG00000163281			Gnpda2 (MGI:1915230)
chr4	46035768	46124064	4p14-q21.1	4p12	137166	GABRG1	Gamma-aminobutyric acid (GABA) A receptor, gamma-1	GABRG1	2565	ENSG00000163285			Gabrg1 (MGI:103156)
chr4	46243547	46390348	4p13-p12	4p12	137140	GABRA2	Gamma-aminobutyric acid (GABA) A receptor, alpha-2	GABRA2	2555	ENSG00000151834		{Alcohol dependence, susceptibility to}, 103780 (3), Multifactorial	Gabra2 (MGI:95614)
chr4	46734826	46909265	4p12	4p12	609811	COX7B2	Cytochrome C oxidase subunit VIIb2	COX7B2	170712	ENSG00000170516			
chr4	46918899	46994406	4p14-q12	4p12	137141	GABRA4	Gamma-aminobutyric acid (GABA) A receptor, alpha-4	GABRA4	2557	ENSG00000109158	cluster with GABRA2, B1, G1; ?involved in autism		Gabra4 (MGI:95616)
chr4	46993559	47438408	4p13-p12	4p12	137190	GABRB1, EIEE45	Gamma-aminobutyric acid (GABA) A receptor, beta-1	GABRB1	2560	ENSG00000163288		Epileptic encephalopathy, early infantile, 45, 617153 (3), Autosomal dominant	Gabrb1 (MGI:95619)
chr4	47450786	47463729	4p12	4p12	616656	COMMD8	COMM domain-containing protein 8	COMMD8	54951	ENSG00000169019			Commd8 (MGI:1343485)
chr4	47593997	47838105	4p12	4p12	605236	CORIN, CRN, TMPRSS10, ATC2, PEE5	Corin, serine peptidase	CORIN	10699	ENSG00000145244		Preeclampsia/eclampsia 5, 614595 (3)	Corin (MGI:1349451)
chr4	47935014	48016717	4p12-cen	4p12	123825	CNGA1, CNCG1, RP49	Cyclic nucleotide gated channel, alpha 1	CNGA1	1259	ENSG00000198515		Retinitis pigmentosa 49, 613756 (3)	Cnga1 (MGI:88436)
chr4	48063503	48135321	4p12	4p12	600058	TXK, BTKL	TXK tyrosine kinase	TXK	7294	ENSG00000074966			Txk (MGI:102960)
chr4	48135782	48269863	4p12	4p12-p11	600583	TEC	tec protein tyrosine kinase	TEC	7006	ENSG00000135605			Tec (MGI:98662)
chr4	48341474	48426197	4p11	4p11	610492	SLAIN2, KIAA1458	SLAIN motif family, member 2	SLAIN2	57606	ENSG00000109171			Slain2 (MGI:1923241)
chr4	48490251	48499350	4p11	4p11	607520	ZAR1	Zygote arrest 1	ZAR1	326340	ENSG00000182223			Zar1 (MGI:2180337)
chr4	50000000	190214555	4q		603664	MHW2	Mental health wellness 2		50979		at D4S397	{Mental health wellness-2}, 603664 (2)	
chr4	50000000	190214555	4q		601454	PSORS3	Psoriasis susceptibility 3	PSORS3	7889			{Psoriasis susceptibility 3}, 601454 (2)	
chr4	50000000	190214555	4q		610430	WM2	Macroglobulinemia, Waldenstrom, susceptibility to, 2		100188811		between D4S2910 and D4S1539	{Macroglobulinemia, Waldenstrom, susceptibility to, 2}, 610430 (2)	
chr4	51800000	65500000	4q12-q13.1		612431	DFNA27	Deafness, autosomal dominant 27	DFNA27	23722		max lod at D4S398	Deafness, autosomal dominant 27, 612431 (2), Autosomal dominant	
chr4	51800000	69400000	4q12-q13.2		609952	DFNB55	Deafness, autosomal recessive 55	DFNB55	494148		max lod at D4S2638	Deafness, autosomal recessive 55, 609952 (2), Autosomal recessive	
chr4	51800000	65500000	4q12-q13.1		614329	MRT31	Mental retardation, autosomal recessive 31		100852399		between rs11944876 and rs6551838	Mental retardation, autosomal recessive 31, 614329 (2), Autosomal recessive	
chr4	51800000	58500000	4q12		609258	MYP9	Myopia 9	MYP9	553194			Myopia 9, 609258 (2), Multifactorial	
chr4	51800000	58500000	4q12		106700	TAPVR1	Total anomalous pulmonary venous return 1	TAPVR1	6893		between D4S1630 and D4S3019; ?mutation in KDR	Total anomalous pulmonary venous return, 106700 (2), Autosomal dominant	
chr4	51842999	51916836	4q12	4q12	612977	DCUN1D4, KIAA0276	DCN1 domain-containing protein 4	DCUN1D4	23142	ENSG00000109184			Dcun1d4 (MGI:2140972)
chr4	52020694	52038318	4q12	4q12	600900	SGCB, LGMD2E	Sarcoglycan, beta (43kD dystrophin-associated glycoprotein)	SGCB	6443	ENSG00000163069		Muscular dystrophy, limb-girdle, type 2E, 604286 (3), Autosomal recessive	Sgcb (MGI:1346523)
chr4	52051330	52097304	4q11-q12	4q12	612814	SPATA18, SPETEX1	Spermatogenesis-associated protein 18	SPATA18	132671	ENSG00000163071			Spata18 (MGI:1920722)
chr4	52590959	52659334	4q12	4q12	612849	USP46	Ubiquitin-specific peptidase 46	USP46	64854	ENSG00000109189			Usp46 (MGI:1916977)
chr4	52712393	52720696	4q12	4q12	614625	DANCR, ANCR, KIAA0114	Differentiation-antagonizing noncoding RNA	DANCR	57291				
chr4	52712681	52712746	4q12	4q12	614627	MIR4449	Micro RNA 4449	MIR4449	100616436				
chr4	52713248	52713369	4q12	4q12	614626	SNORA26	Small nucleolar RNA, H/ACA box, 26	SNORA26	677810				
chr4	52862327	52866834	4q12	4q12	612404	RASL11B	RAS-like, family 11, member B	RASL11B	65997	ENSG00000128045			Rasl11b (MGI:1916189)
chr4	53377571	53462610	4q12	4q12	607686	FIP1L1	Fip1-like 1	FIP1L1	81608	ENSG00000145216	fused to PDGFRA in hypereosinophilic syndrome		
chr4	53458263	53652524	4q12	4q12	609732	LNX1, LNX, PDZRN2	Ligand of numb protein X1	LNX1	84708	ENSG00000072201			Lnx1 (MGI:1278335)
chr4	53996334	54064689	4q11-q12	4q12	604332	CHIC2, BTL	Cysteine-rich hydrophobic domain 2 (Brx-like gene translocated in leukemia)	CHIC2	26511	ENSG00000109220		{Leukemia, acute myeloid}, 601626 (3), Autosomal dominant	Chic2 (MGI:1921527)
chr4	54100080	54101954	4q12	4q12	616253	GSX2, GSH2	GS homeobox 2	GSX2	170825	ENSG00000180613			Gsx2 (MGI:95843)
chr4	54229088	54298246	4q12	4q12	173490	PDGFRA	Platelet-derived growth factor receptor, alpha polypeptide	PDGFRA	5156	ENSG00000134853	same 700bp segment as KIT; fused to BCR or FIP1L1	Gastrointestinal stromal tumor, somatic, 606764 (3); Hypereosinophilic syndrome, idiopathic, resistant to imatinib, 607685 (3), Isolated cases, Somatic mutation	Pdgfra (MGI:97530)
chr4	54657927	54740714	4q12	4q12	164920	KIT, PBT	Hardy-Zuckerman 4 feline sarcoma (v-kit) oncogene	KIT	3815	ENSG00000157404	same 700bp segment as PDGFRA	Gastrointestinal stromal tumor, familial, 606764 (3), Autosomal dominant, Isolated cases; Germ cell tumors, somatic, 273300 (3); Leukemia, acute myeloid, 601626 (3), Autosomal dominant; Mast cell disease, 154800 (3), Autosomal dominant; Piebaldism, 172800 (3), Autosomal dominant	Kit (MGI:96677)
chr4	55078480	55125594	4q12	4q12	191306	KDR	Kinase insert domain receptor	KDR	3791	ENSG00000128052	?mutant in TAPVR1	Hemangioma, capillary infantile, somatic, 602089 (3); {Hemangioma, capillary infantile, susceptibility to}, 602089 (3), Autosomal dominant	Kdr (MGI:96683)
chr4	55346220	55373099	4q12	4q12	611715	SRD5A3, SRD5A2L, CDG1Q, KRIZI	Steroid 5-alpha-reductase 3	SRD5A3	79644	ENSG00000128039		Congenital disorder of glycosylation, type Iq, 612379 (3), Autosomal recessive; Kahrizi syndrome, 612713 (3), Autosomal recessive	Srd5a3 (MGI:1930252)
chr4	55395652	55453396	4q12	4q12	614726	TMEM165, FT27, CDG2K	Transmembrane protein 165	TMEM165	55858	ENSG00000134851		Congenital disorder of glycosylation, type IIk, 614727 (3), Autosomal recessive	Tmem165 (MGI:894407)
chr4	55427900	55547137	4q12	4q12	601851	CLOCK	Circadian locomotor output cycles kaput	CLOCK	9575	ENSG00000134852			Clock (MGI:99698)
chr4	55556522	55592273	4q11	4q12	611676	PDCL2	Phosducin-like 2	PDCL2	132954	ENSG00000163440			Pdcl2 (MGI:1890655)
chr4	55853647	55905077	4q12	4q12	607879	EXOC1, SEC3	Exocyst complex component 1	EXOC1	55763	ENSG00000090989			Exoc1 (MGI:2445020)
chr4	55948807	56033362	4q12	4q12	611423	CEP135, KIAA0635, MCPH8	Centrosomal protein, 135kD	CEP135	9662	ENSG00000174799		Microcephaly 8, primary, autosomal recessive, 614673 (3), Autosomal recessive	Cep135 (MGI:2681869)
chr4	56337686	56389417	4q12	4q12	614365	AASDH, ACSF4	Aminoadipate-semialdehyde dehydrogenase	AASDH	132949	ENSG00000157426			Aasdh (MGI:2442517)
chr4	56393361	56435635	4q12	4q12	172450	PPAT, GPAT	Phosphoribosylpyrophosphate amidotransferase	PPAT	5471	ENSG00000128059			Ppat (MGI:2387203)
chr4	56435748	56461367	4q12	4q12	172439	PAICS, AIRC	Phosphoribosylaminoimidazole carboxylase	PAICS	10606	ENSG00000128050	bifunctional enzyme; ade-D; 625bp from PPAT		Paics (MGI:1914304)
chr4	56467595	56503680	4q12	4q12	602122	SRP72, BMFS1	Signal recognition particle, 72kD	SRP72	6731	ENSG00000174780		Bone marrow failure syndrome 1, 614675 (3), Autosomal dominant	Srp72 (MGI:1333795)
chr4	56505208	56523982	4q12	4q12	612405	ARL9	ADP-ribosylation factor-like 9	ARL9	132946	ENSG00000196503			Arl9 (MGI:1915496)
chr4	56647987	56681865	4q11-q12	4q12	607275	HOPX, HOP	HOP homeobox	HOPX	84525	ENSG00000171476			Hopx (MGI:1916782)
chr4	56809859	56822209	4q12	4q12	605753	SPINK2	Serine protease inhibitor, Kazal-type, 2	SPINK2	6691	ENSG00000128040			
chr4	56907875	56935846	4q12	4q12	600571	REST, NRSF, WT6, GINGF5, HGF5	RE1-silencing transcription factor	REST	5978	ENSG00000084093		Fibromatosis, gingival, 5, 617626 (3), Autosomal dominant; {Wilms tumor 6, susceptibility to}, 616806 (3)	Rest (MGI:104897)
chr4	56963343	56977659	4q12	4q12	614919	NOA1, C4orf14	Nitric oxide-associated protein 1	NOA1	84273	ENSG00000084092			Noa1 (MGI:1914306)
chr4	56978639	57031161	4q12	4q12	180661	POL2RB	Polymerase (RNA) II (DNA directed) polypeptide B, 140kD	POLR2B	5431	ENSG00000047315			Polr2b (MGI:2388280)
chr4	57031070	57110384	4q12	4q12	602867	IGFBP7, MAC25, RAMSVPS	Insulin-like growth factor-binding protein-7	IGFBP7	3490	ENSG00000163453		Retinal arterial macroaneurysm with supravalvular pulmonic stenosis, 614224 (3), Autosomal recessive	Igfbp7 (MGI:1352480)
chr4	58500000	87100000	4q13-q21		609400	AIS4, VAMAS5	Autoimmune disease, susceptibility to, 4		619405		between D4S392 and D4S3042	{Autoimmune disease, susceptibility to, 4}, 609400 (2)	
chr4	61201255	62078334	4q13.1	4q13.1	616417	ADGRL3, LPHN3, CIRL3, CL3, LEC3, KIAA0768	Adhesion G protein-coupled receptor L3	ADGRL3	23284	ENSG00000150471			Adgrl3 (MGI:2441950)
chr4	64276297	64409509	4q13.1	4q13.1	617242	TECRL, TERL, SRD5A2L2, GPSN2L, CPVT3	Trans-2,3-enoyl-CoA reductase-like protein	TECRL	253017	ENSG00000205678		Ventricular tachycardia, catecholaminergic polymorphic, 3, 614021 (3), Autosomal recessive	Tecrl (MGI:2444966)
chr4	65319562	65670494	4q13	4q13.1-q13.2	600004	EPHA5, TYRO4, HEK7	Ephrin receptor EphA5	EPHA5	2044	ENSG00000145242			Epha5 (MGI:99654)
chr4	65500000	87100000	4q13.2-q21.3		611630	ETL3, FMTLE	Epilepsy, familial temporal lobe, 3		100188848		max lod at D4S1517	Epilepsy, familial temporal lobe, 3, 611630 (2), Autosomal dominant	
chr4	67468761	67545537	4q12-q13.3	4q13.2	117141	CENPC1, CENPC	Centromere autoantigen C1	CENPC	1060	ENSG00000145241	?pseudogene on chr.12		Cenpc1 (MGI:99700)
chr4	67558696	67607340	4q13.2	4q13.2	604298	STAP1, BRDG1	Signal transducing adaptor family member 1	STAP1	26228	ENSG00000035720			Stap1 (MGI:1926193)
chr4	67615760	67701170	4q13.2	4q13.2	611361	UBA6, UBE1L2	Ubiquitin activating enzyme 6	UBA6	55236	ENSG00000033178			Uba6 (MGI:1913894)
chr4	67737374	67756085	4q21.2	4q13.2	138850	GNRHR, LHRHR, HH7	Gonadotropin-releasing hormone receptor	GNRHR	2798	ENSG00000109163	placed at 4q12 or 4q13 by some	Hypogonadotropic hypogonadism 7 without anosmia, 146110 (3), Autosomal recessive	Gnrhr (MGI:95790)
chr4	67910300	67963513	4q13.2	4q13.2	611704	TMPRSS11A, ECRG1	Transmembrane protease, serine 11A	TMPRSS11A	339967	ENSG00000187054			Tmprss11a (MGI:2684853)
chr4	68038415	68042510	4q12	4q13.2	608311	GRINL1B	Glutamate receptor, ionotropic, N-methyl D-aspartate-like 1B	GCOM2	339970				
chr4	68060609	68063296	4q13.2	4q13.2	610892	SYT14L, SYTDEP, CHR415SYT	Synaptotagmin 14-like protein	SYT14P1	401135				
chr4	68310386	68350116	4q13.2	4q13.2	617283	YTHDC1, KIAA1966	TYH domain-containing protein 1	YTHDC1	91746	ENSG00000083896			Ythdc1 (MGI:2443713)
chr4	68447448	68497603	4q13.2	4q13.2	610399	TMPRSS11E, DESC1	Transmembrane protease, serine 11E	TMPRSS11E	28983	ENSG00000087128			Tmprss11e (MGI:3513175)
chr4	68537183	68576353	4q13	4q13.2	601903	UGT2B17, BMND12	UDP-glucuronyltransferase, family 2, beta-17	UGT2B17	7367	ENSG00000197888		{Bone mineral density QTL 12, osteoporosis}, 612560 (3)	Ugt2b1 (MGI:1919023)
chr4	68646596	68670775	4q13	4q13.2	600069	UGT2B15, UGT2B8	UDP-glucuronyltransferase, family 2, beta-15	UGT2B15	7366	ENSG00000196620			
chr4	68815992	68832037	4q13.2	4q13.2	600070	UGT2B10	Uridine diphosphate glycosyltransferase 2 family, member B10	UGT2B10	7365	ENSG00000109181			Ugt2b34 (MGI:2140962)
chr4	68928458	68951799	4q13	4q13.2	616382	UGT2A3	Uridine diphosphate glucuronosyltransferase 2 family, member A3	UGT2A3	79799	ENSG00000135220			Ugt2a3 (MGI:1919344)
chr4	69051263	69112986	4q13	4q13.2	600068	UGT2B7, UGT2B9	UDP-glucuronyltransferase, family 2, beta-7	UGT2B7	7364	ENSG00000171234			Ugt2b36,Ugt2b35 (MGI:3576103,MGI:3576100)
chr4	69200189	69224979	4q13.2	4q13.2	603064	UGT2B11	Uridine diphosphate glycosyltransferase 2 family, member B11	UGT2B11	10720	ENSG00000213759			
chr4	69280428	69295049	4q13.2	4q13.2	606497	UGT2B28	Uridine diphosphate glycosyltransferase 2 family, member B28	UGT2B28	54490	ENSG00000135226			Ugt2b38,Ugt2b37,Ugt2b5 (MGI:2148239,MGI:2140794,MGI:98900)
chr4	69480164	69526013	4q13	4q13.3	600067	UGT2B4, UGT2B11	UDP-glucuronyltransferase, family 2, beta-4	UGT2B4	7363	ENSG00000156096	cluster in order B7--B4--B15 in 195kb		
chr4	69588416	69653248	4q13	4q13.3	604716	UGT2A1	Uridine diphosphate glycosyltransferase 2 family, member A1	UGT2A1	10941	ENSG00000173610			Ugt2a1 (MGI:2149905)
chr4	69726847	69760711	4q13.3	4q13.3	608436	SULT1B1, ST1B2	Sulfotransferase family 1B, member 1	SULT1B1	27284	ENSG00000173597			Sult1b1 (MGI:2136282)
chr4	69841211	69860151	4q13.1	4q13.3	600043	STE, EST	Sulfotransferase, estrogen-preferring	SULT1E1	6783	ENSG00000109193			Sult1e1 (MGI:98431)
chr4	69931061	69946569	4q21.1	4q13.3	115450	CSN1	Casein, alpha	CSN1S1	1446	ENSG00000126545			
chr4	69955255	69965761	4q21.1	4q13.3	115460	CSN2	Casein, beta	CSN2	1447	ENSG00000135222			Csn2 (MGI:88541)
chr4	69995930	70002455	4q11-q13	4q13.3	184470	STATH	Statherin	STATH	6779	ENSG00000126549			
chr4	70028412	70036537	4q13	4q13.3	142702	HTN3, HTN2, HIS2	Histatin-3	HTN3	3347	ENSG00000205649			
chr4	70050414	70058847	4q13	4q13.3	142701	HTN1	Histatin-1	HTN1	3346	ENSG00000126550	3 genes in a 15kb segment		
chr4	70195727	70204575	4q13.3	4q13.3	614843	ODAM, APIN	Odontogenic ameloblast-associated protein	ODAM	54959	ENSG00000109205			Odam (MGI:1916842)
chr4	70238369	70251431	4q13-q21	4q13.3	601695	CSN3, CNS10, CSNK	Casein, kappa	CSN3	1448	ENSG00000171209			Csn3 (MGI:107461)
chr4	70383077	70390243	4q13.3	4q13.3	611593	SMR3B, SMR1B, PRL3, PBII	Submaxillary gland androgen-regulated protein 3, mouse, homolog of, B	SMR3B	10879	ENSG00000171201			
chr4	70397881	70410196	4q13.3	4q13.3	608936	PROL1, PRL1, BPLP	Proline-rich lacrimal protein 1	OPRPN	58503	ENSG00000171199			
chr4	70430491	70482996	4q13-q21	4q13.3	158375	MUC7	Mucin 7, salivary	MUC7	4589	ENSG00000171195		{Asthma, protection against}, 600807 (3), Autosomal dominant	
chr4	70518571	70532742	4q13.3	4q13.3	610912	AMTN, AI3B	Amelotin	AMTN	401138	ENSG00000187689	mutation identified in 1 AI3B family	?Amelogenesis imperfecta, type IIIB, 617607 (3), Autosomal dominant	Amtn (MGI:1918671)
chr4	70592257	70607287	4q21	4q13.3	601259	AMBN, AI1F	Ameloblastin	AMBN	258	ENSG00000178522	mutation identified in 1 AI1F family	Amelogenesis imperfecta, type IF, 616270 (3), Autosomal recessive	Ambn (MGI:104655)
chr4	70627470	70646818	4q21	4q13.3	606585	ENAM, AIH2, AI1C	Enamelin	ENAM	10117	ENSG00000132464		Amelogenesis imperfecta, type IB, 104500 (3), Autosomal dominant; Amelogenesis imperfecta, type IC, 204650 (3), Autosomal recessive	Enam (MGI:1333772)
chr4	70655540	70666630	4q21	4q13.3	147790	IGJ	Immunoglobulin J polypeptide, linker protein for	JCHAIN	3512	ENSG00000132465			Jchain (MGI:96493)
chr4	70688478	70690550	4q21	4q13.3	611614	UTP3, CRL1, CRLZ1	UTP3, S. crevisiae, homolog of	UTP3	57050	ENSG00000132467			Utp3 (MGI:1919230)
chr4	70704203	70808621	4q13.3	4q13.3	611194	RUFY3, SINGAR1, RIPX	FUN and FYVE domains-containing protein 3	RUFY3	22902	ENSG00000018189			Rufy3 (MGI:106484)
chr4	70815781	70843273	4q13	4q13.3	604851	GRSF1	G-rich RNA sequence-binding factor 1	GRSF1	2926	ENSG00000132463			Grsf1 (MGI:106479)
chr4	70993547	71030913	4q13.3-q21.1	4q13.3	125450	DCK	Deoxycytidine kinase	DCK	1633	ENSG00000156136			Dck (MGI:102726)
chr4	71062645	71572086	4q21	4q13.3	603345	SLC4A4, NBC1, KNBC	Solute carrier family 4, sodium bicarbonate cotransporter, member 4	SLC4A4	8671	ENSG00000080493		Renal tubular acidosis, proximal, with ocular abnormalities, 604278 (3), Autosomal recessive	Slc4a4 (MGI:1927555)
chr4	71741692	71805519	4q12	4q13.3	139200	GC, DBP	Group-specific component (vitamin D-binding protein)	GC	2638	ENSG00000145321	4q13-q21.1 by in situ hybridization		Gc (MGI:95669)
chr4	72031803	72148200	4q13.2-q13.3	4q13.3	607449	GPR74, NPFF2, NPGPR	G protein-coupled receptor 74	NPFFR2	10886	ENSG00000056291			Npffr2 (MGI:1860130)
chr4	72280968	72568798	4q21	4q13.3	605011	ADAMTS3	A Disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 3	ADAMTS3	9508	ENSG00000156140			Adamts3 (MGI:3045353)
chr4	73054695	73069776	4q21.1	4q13.3	610428	COX18	Cytochrome c oxidase assembly protein COX18	COX18	285521	ENSG00000163626			Cox18 (MGI:2448532)
chr4	73073965	73259765	4q13.3	4q13.3	615929	ANKRD17, GTAR	Ankyrin repeat domain-containing protein 17	ANKRD17	26057	ENSG00000132466			Ankrd17 (MGI:1932101)
chr4	73404238	73421483	4q11-q13	4q13.3	103600	ALB, ANALBA, FDAH	Albumin	ALB	213	ENSG00000163631	linked to GC	Analbuminemia, 616000 (3); [Dysalbuminemic hyperthyroxinemia], 615999 (3)	Alb (MGI:87991)
chr4	73436218	73455784	4q11-q13	4q13.3	104150	AFP, HPAFP, AFPD	Alpha-fetoprotein	AFP	174	ENSG00000081051	order: 5'-ALB-3'--5'-AFP-3'	Alpha-fetoprotein deficiency, 615969 (3), Autosomal recessive; [Hereditary persistence of alpha-fetoprotein], 615970 (3), Autosomal dominant	Afp (MGI:87951)
chr4	73481744	73504000	4q11-q13	4q13.3	104145	AFM, ALBA, ALB2	Afamin	AFM	173	ENSG00000079557	10kb 3' of AFP		Afm (MGI:2429409)
chr4	73571549	73620630	4q13.3	4q13.3	612620	RASSF6	Ras association domain family, member 6	RASSF6	166824	ENSG00000169435			Rassf6 (MGI:1920496)
chr4	73740505	73743715	4q12-q13	4q13.3	146930	IL8	Interleukin-8	CXCL8	3576	ENSG00000169429			
chr4	73836555	73838759	4q12-q13	4q13.3	138965	CXCL6, SCYB6, GCP2	Chemokine, C-X-C motif, ligand 6 (granulocyte chemotactic protein-2)	CXCL6	6372	ENSG00000124875			Cxcl5 (MGI:1096868)
chr4	73848735	73849252	4q12-q13	4q13.3	188035	PPBPL1, TGB2	Pro-platelet basic protein-like 1 (thromboglobulin, beta-2)	PPBPP1	728045		in cluster with PPBP, PF4, and PF4V1		
chr4	73853295	73854483	4q12-q13	4q13.3	173461	PF4V1	Platelet factor 4, variant 1 (PF4-like)	PF4V1	5197	ENSG00000109272	same region as PF4 and IP10		
chr4	73869391	73871301	4q12-q13	4q13.3	155730	CXCL1, GRO1, MGSA	Chemokine, C-X-C, ligand 1 (GRO1 oncogene; melanoma growth stimulating activity, alpha)	CXCL1	2919	ENSG00000163739	apparently cluster of 3 GRO genes		
chr4	73980824	73982123	4q12-q13	4q13.3	173460	PF4	Platelet factor 4	PF4	5196	ENSG00000163737	6kb from PF4V1		Pf4 (MGI:1888711)
chr4	73986438	73988189	4q12-q13	4q13.3	121010	PPBP, CXCL7, SCYB7, CTAP3, TGB	Pro-platelet basic protein	PPBP	5473	ENSG00000163736	less than 7kb from PF4		
chr4	73995641	73998728	4q12-q13	4q13.3	600324	CXCL5, SCYB5, ENA78	Chemokine, C-X-C motif, ligand 5 (epithelial-derived neutrophil-activating peptide 78)	CXCL5	6374	ENSG00000163735			
chr4	74036588	74038772	4q12-q13	4q13.3	139111	CXCL3, GRO3, MIP2B	Chemokine, C-X-C motif, ligand 3 (GRO3 oncogene)	CXCL3	2921	ENSG00000163734			Cxcl2 (MGI:1340094)
chr4	74054037	74055398	4q13.3	4q13.3	611591	PPBPP2, PPBPL2	Pro-platelet basic protein pseudogene 2	PPBPP2	10895				
chr4	74097034	74099279	4q12-q13	4q13.3	139110	CXCL2, GRO2, MIP2A	Chemokine, C-X-C motif, ligand 2 (GRO2 oncogene)	CXCL2	2920	ENSG00000081041			Cxcl1 (MGI:108068)
chr4	74123272	74303098	4q13.3	4q13.3	614047	MTHFD2L	Methylenetetrahydrofolate dehydrogenase 2-like, NADP(+)-dependent	MTHFD2L	441024	ENSG00000163738			Mthfd2l (MGI:1915871)
chr4	74365142	74388759	4q13.3	4q13.3	602061	EREG	Epiregulin	EREG	2069	ENSG00000124882			Ereg (MGI:107508)
chr4	74445097	74455008	4q13-q21	4q13.3	104640	AREG	Amphiregulin	AREG	374	ENSG00000109321			Areg (MGI:88068)
chr4	74744758	74794717	4q13-q21	4q13.3	600345	BTC	Betacellulin	BTC	685	ENSG00000174808	tightly linked to Areg in mouse		Btc (MGI:99439)
chr4	74933074	75050114	4q13.3	4q13.3	617688	PARM1, CIPAR1	Prostate androgen-regulated mucin-like protein 1	PARM1	25849	ENSG00000169116			Parm1 (MGI:2443349)
chr4	75300000	87100000	4q21		613509	DEL4q21, C4DELq21	Chromosome 4q21 deletion syndrome				contiguous gene deletion if at least 30 genes	Chromosome 4q21 deletion syndrome, 613509 (4), Isolated cases	
chr4	75300000	113200000	4q21-q25		134720	FECB	Fecundity gene, Boorla, of sheep, homolog of		7892		sheep chr.6		
chr4	75300000	154600000	4q21-q31		608371	OFC4	Orofacial cleft 4		474387			Orofacial cleft 4, 608371 (2)	
chr4	75300000	100100000	4q21-q23		609566	PFM3	Parietal foramina 3	PFM3	619475		maximum lod between D4S2986 and D4S421	Parietal foramina 3, 609566 (2), Autosomal dominant	
chr4	75479036	75515056	4q21.1	4q21.1	607680	RCHY1, ZNF363, PIRH2, ARNIP	Ring finger and CHY zinc finger domain containing 1, E3 ubiquitin protein ligase	RCHY1	25898	ENSG00000163743			Rchy1 (MGI:1915348)
chr4	75513943	75547333	4q21.1	4q21.1	612535	THAP6	THAP domain-containing protein 6	THAP6	152815	ENSG00000174796			
chr4	75554996	75565892	4q21.1	4q21.1	614829	ODAPH, C4orf26	Odontogenesis-associated phosphoprotein	ODAPH	152816	ENSG00000174792		Amelogenesis imperfecta, type IIA4, 614832 (3), Autosomal recessive	Odaph (MGI:2685891)
chr4	75576493	75630539	4q21.1	4q21.1	603442	CDKL2, KKIAMRE, P56	Cyclin-dependent kinase-like 2	CDKL2	8999	ENSG00000138769			Cdkl2 (MGI:1858227)
chr4	75724521	75814288	4q21.1	4q21.1	603344	USO1, TAP, p115	USO1 vesicle docking protein, S. cerevisiae, homolog of	USO1	8615	ENSG00000138768			Uso1 (MGI:1929095)
chr4	75859871	75902527	4q21.1	4q21.1	602256	PPEF2	Protein phosphatase, EF hand calcium-binding domain-2	PPEF2	5470	ENSG00000156194			Ppef2 (MGI:1342304)
chr4	75910654	75941012	4q21.1	4q21.1	607469	NAAA, ASAHL	N-acylethanolamine acid amidase	NAAA	27163	ENSG00000138744			Naaa (MGI:1914361)
chr4	76001341	76007522	4q21	4q21.1	601704	CXCL9, MIG, SCYB9	Chemokine, C-X-C motif, ligand 9	CXCL9	4283	ENSG00000138755	close to INP10		
chr4	76011167	76112801	4q21.1	4q21.1	603086	ART3	ADP-ribosyltransferase 3	ART3	419	ENSG00000156219			Art3 (MGI:1202729)
chr4	76021115	76023535	4q21	4q21.1	147310	CXCL10, INP10	Chemokine, C-X-C motif, ligand 10 (interferon-inducible cytokine IP-10)	CXCL10	3627	ENSG00000169245	?involved in monocytic leukemia with t(4;11)(q21;q23)		Cxcl10 (MGI:1352450)
chr4	76033681	76036196	4q21.2	4q21.1	604852	CXCL11, SCYB11, IP9, SCYB9B	Chemokine, C-X-C motif, ligand 11	CXCL11	6373	ENSG00000169248			
chr4	76114658	76148514	4q21.1	4q21.1	607607	NUP54	Nucleoporin, 54kD	NUP54	53371	ENSG00000138750			Nup54 (MGI:1920460)
chr4	76158736	76213898	4q13-q21	4q21.1	602257	SCARB2, CD36L2, LIMPII, AMRF, EPM4	Scavenger receptor class B, member 2	SCARB2	950	ENSG00000138760		Epilepsy, progressive myoclonic 4, with or without renal failure, 254900 (3), Autosomal recessive	Scarb2 (MGI:1196458)
chr4	76306025	76311129	4q25-q34	4q21.1	607406	GENEX3414	Genethonin 1	STBD1	8987	ENSG00000118804			Stbd1 (MGI:1261768)
chr4	76435099	76783252	4q21.1	4q21.1	604570	SHROOM3, SHRM, KIAA1481	Shroom family member 3	SHROOM3	57619	ENSG00000138771			Shroom3 (MGI:1351655)
chr4	76949713	77040153	4q21.1	4q21.1	612887	SEPT11	Septin 11	SEPT11	55752	ENSG00000138758			Sept11 (MGI:1277214)
chr4	77157203	77170059	4q21.1	4q21.1	603203	CCNG2	Cyclin G2	CCNG2	901	ENSG00000138764			Ccng2 (MGI:1095734)
chr4	77511752	77611833	4q21	4q21.1	605149	CXCL13, SCYB13, BCA1, BLC	Chemokine, C-X-C motif, ligand 13	CXCL13	10563	ENSG00000156234			Cxcl13 (MGI:1888499)
chr4	77862650	77952789	4q21.1	4q21.1	611821	MRPL1	Mitochondrial ribosomal protein L1	MRPL1	65008	ENSG00000169288			Mrpl1 (MGI:2137202)
chr4	78056967	78544268	4q21	4q21.21	607830	FRAS1, FRASRS1	FRAS1 gene	FRAS1	80144	ENSG00000138759		Fraser syndrome 1, 219000 (3), Autosomal recessive	Fras1 (MGI:2385368)
chr4	78551587	78610450	4q21	4q21.21	106490	ANXA3, ANX3	Annexin A3 (lipocortin III)	ANXA3	306	ENSG00000138772			Anxa3 (MGI:1201378)
chr4	78776377	78916364	4q21.21	4q21.21	617648	BMP2K, BIKE	BMP2-inducible kinase	BMP2K	55589	ENSG00000138756			Bmp2k (MGI:2155456)
chr4	78887224	78939427	4q21.21	4q21.21	614577	PAQR3, RKTG	Progestin and ADIPOQ receptor family, member 3	PAQR3	152559	ENSG00000163291			Paqr3 (MGI:2679683)
chr4	79827470	79863246	4q21.1	4q21.21	609717	PCAT4, GDEP	Prostate cancer-associated transcript 4	PCAT4	118425				
chr4	79901616	80073471	4q21	4q21.21	608041	ANTXR2, CMG2, HFS	Anthrax toxin receptor 2	ANTXR2	118429	ENSG00000163297		Hyaline fibromatosis syndrome, 228600 (3), Autosomal recessive	Antxr2 (MGI:1919164)
chr4	80183417	80204328	4q21.21	4q21.21	616639	PRDM8, EPM10	PR domain-containing protein 8	PRDM8	56978	ENSG00000152784	mutation identified in 1 EPM10 family	?Epilepsy, progressive myoclonic, 10, 616640 (3), Autosomal recessive	Prdm8 (MGI:1924880)
chr4	80266587	80291016	4q21	4q21.21	165190	FGF5, TCMGLY	Fibroblast growth factor-5	FGF5	2250	ENSG00000138675		Trichomegaly, 190330 (3), Autosomal recessive	Fgf5 (MGI:95519)
chr4	81030777	81057624	4p14-q21	4q21.21	112263	BMP3	Bone morphogenetic protein-3	BMP3	651	ENSG00000152785			Bmp3 (MGI:88179)
chr4	81086873	81217836	4q13.1-q21.1	4q21.21	601591	PRKG2, PRKGR2	Protein kinase, cGMP-dependent, type II	PRKG2	5593	ENSG00000138669			Prkg2 (MGI:108173)
chr4	81426392	81471927	4q12-q21	4q21.21	614532	RASGEF1B, GPIG4	RASGEF domain family, member 1B	RASGEF1B	153020	ENSG00000138670			Rasgef1b (MGI:2443755)
chr4	82353313	82373995	4q21.1-q21.2	4q21.22	601324	HNRPD, AUF1, AUF1A	Heterogeneous nuclear ribonucleoprotein D	HNRNPD	3184	ENSG00000138668			Hnrnpd (MGI:101947)
chr4	82422563	82430224	4q21.33	4q21.22	607137	HNRNPDL, HNRPDL, JKTBP, LGMD1G	Heterogeneous nuclear ribonucleoprotein D-like protein	HNRNPDL	9987	ENSG00000152795		Muscular dystrophy, limb-girdle, type 1G, 609115 (3), Autosomal dominant	Hnrnpdl (MGI:1355299)
chr4	82483169	82562559	4q21.22	4q21.22	617292	TMEM150C, TTN3	Transmembrane protein 150C	TMEM150C	441027	ENSG00000249242			Tmem150c (MGI:3041258)
chr4	82629536	82798856	4q21.1	4q21.22	608370	SCD4, ACOD4	Stearoyl-CoA desaturase 4	SCD5	79966	ENSG00000145284			
chr4	82818508	82900570	4q21.22	4q21.22	610257	SEC31A, SEC31L1, KIAA0905	Sec31, yeast, homolog of, A	SEC31A	22872	ENSG00000138674			Sec31a (MGI:1916412)
chr4	82900649	82920282	4q21.22	4q21.22	612537	THAP9	THAP domain-containing protein 9	THAP9	79725	ENSG00000168152			
chr4	82924602	83012950	4q21.22	4q21.22	613367	LIN54	Lin54, C. elegans, homolog of	LIN54	132660	ENSG00000189308			Lin54 (MGI:2140902)
chr4	83035085	83075817	4q21.22	4q21.22	616008	COPS4, CSN4	COP9 signalosome, subunit 4	COPS4	51138	ENSG00000138663			Cops4 (MGI:1349414)
chr4	83090047	83114757	4q21	4q21.22	607515	PLAC8	Placenta-specific gene 8	PLAC8	51316	ENSG00000145287			Plac8 (MGI:2445289)
chr4	83138563	83285133	4q21-q22	4q21.22-q21.23	609825	COQ2, COQ10D1, MSA1	CoQ2, S. cerevisiae, homolog of (parahydroxybenzoate-polyprenyltransferase, mitochondrial)	COQ2	27235	ENSG00000173085		Coenzyme Q10 deficiency, primary, 1, 607426 (3), Autosomal recessive; {Multiple system atrophy, susceptibility to}, 146500 (3), Autosomal recessive, Autosomal dominant	Coq2 (MGI:1919133)
chr4	83292460	83335152	4q21.3	4q21.23	604724	HPSE, HSE1, HPA	Heparanase	HPSE	10855	ENSG00000173083			Hpse (MGI:1343124)
chr4	83407342	83456045	4q21.23	4q21.23	606769	HELQ, HEL308	Helicase, POLQ-like	HELQ	113510	ENSG00000163312			Helq (MGI:2176740)
chr4	83455931	83461722	4q21.23	4q21.23	611983	MRPS18C, MRPS18-1	Mitochondrial ribosomal protein S18C	MRPS18C	51023	ENSG00000163319	6 pseudogenes		Mrps18c (MGI:1915985)
chr4	83460938	83485177	4q21.2	4q21.23	611143	FAM175A, CCDC98, ABRAXAS, ABRA1	Family with sequence similarity 175, member A	ABRAXAS1	84142	ENSG00000163322			Abraxas1 (MGI:1917931)
chr4	83535633	83605874	4q21.23	4q21.23	610958	AGPAT9, GPAT3, MAG1	1-acylglycerol-3-phosphate O-acyltransferase 9	GPAT3	84803	ENSG00000138678			Gpat3 (MGI:3603816)
chr4	84493282	84498233	4q21.2-q22	4q21.23	602563	NKX6-1, NKX6A	NK6, Drosophila, homolog of, 1	NKX6-1	4825	ENSG00000163623			Nkx6-1 (MGI:1206039)
chr4	84582903	84651339	4q21	4q21.23	603548	CDS1	CDP-diacylglycerol synthase 1	CDS1	1040	ENSG00000163624			Cds1 (MGI:1921846)
chr4	84669536	84966390	4q21	4q21.23	617485	WDFY3, ALFY, BCHS, MCPH18	WD repeat- and FYVE domain-containing protein 3	WDFY3	23001	ENSG00000163625	mutation identified in 1 MCPH18 family	?Microcephaly 18, primary, autosomal dominant, 617520 (3), Autosomal dominant	Wdfy3 (MGI:1096875)
chr4	85475130	86002669	4q21	4q21.2-q21.3	610586	ARHGAP24, RCGAP72, FILGAP	RHO GTPase-activating protein 24	ARHGAP24	83478	ENSG00000138639			Arhgap24 (MGI:1922647)
chr4	86012295	86594624	4q21.3	4q21.3	602897	MAPK10, PRKM10, JNK3	Mitogen-activated protein kinase 10	MAPK10	5602	ENSG00000109339			Mapk10 (MGI:1346863)
chr4	86594306	86815175	4q21.3	4q21.3	600267	PTPN13	Protein tyrosine phosphatase, nonreceptor-type, 13 (APO-1/CD95 (Fas)-associated phosphatase)	PTPN13	5783	ENSG00000163629	633bp upstream of JNK3		Ptpn13 (MGI:103293)
chr4	86823467	86849262	4q21.3	4q21.3	613366	SLC10A6, SOAT	Solute carrier family 10 (sodium/bile acid cotransporter family), member 6	SLC10A6	345274	ENSG00000145283			Slc10a6 (MGI:1923000)
chr4	86934605	87141053	4q21	4q21.3-q22.1	159557	AFF1, MLLT2, AF4	AF4/FMR2 family, member 1	AFF1	4299	ENSG00000172493	fuses with ALL1		Aff1 (MGI:1100819)
chr4	87100000	92800000	4q22.1		613518	ATOD8	Dermatitis, atopic, 8		105463125			{Dermatitis, atopic, susceptibility to, 8}, 613518 (2)	
chr4	87100000	97900000	4q22		612343	MUSQTL1	Musical aptitude quantitative trait locus 1		100192307		near D4S423 and D4S2460	[Musical aptitude QTL 1], 612343 (2)	
chr4	87100000	122800000	4q22-q27		609994	MYP11	Myopia 11	MYP11	594832		max lod at D4S1564	Myopia 11, 609994 (2)	
chr4	87160102	87220607	4q22.1	4q22.1	611967	KLHL8, KIAA1378	Kelch-like 8	KLHL8	57563	ENSG00000145332			Klhl8 (MGI:2179430)
chr4	87303788	87322905	4q22.1	4q22.1	612127	HSD17B13, SCDR9	17-beta-hydroxysteroid dehydrogenase XIII	HSD17B13	345275	ENSG00000170509			Hsd17b13 (MGI:2140804)
chr4	87336521	87391302	4q21	4q22.1	612831	HSD17B11, RETSDR2, PAN1B	17-beta-hydroxysteroid dehydrogenase XI	HSD17B11	51170	ENSG00000198189			Hsd17b11 (MGI:2149821)
chr4	87608528	87616872	4q21.3	4q22.1	125485	DSPP, DPP, DGI1, DFNA39, DTDP2	Dentin sialophosphoprotein	DSPP	1834	ENSG00000152591		Deafness, autosomal dominant 39, with dentinogenesis, 605594 (3), Autosomal dominant; Dentin dysplasia, type II, 125420 (3), Autosomal dominant; Dentinogenesis imperfecta, Shields type II, 125490 (3), Autosomal dominant; Dentinogenesis imperfecta, Shields type III, 125500 (3), Autosomal dominant	
chr4	87650301	87664360	4q21	4q22.1	600980	DMP1, ARHR, ARHP	Dentin matrix acidic phosphoprotein	DMP1	1758	ENSG00000152592		Hypophosphatemic rickets, AR, 241520 (3), Autosomal recessive	Dmp1 (MGI:94910)
chr4	87799549	87812448	4q21-q25	4q22.1	147563	IBSP	Integrin-binding sialoprotein (bone sialoprotein II)	IBSP	3381	ENSG00000029559			Ibsp (MGI:96389)
chr4	87821397	87846816	4q21.1	4q22.1	605912	MEPE	Matrix, extracellular, phosphoglycoprotein	MEPE	56955	ENSG00000152595			Mepe (MGI:2137384)
chr4	87975649	87983410	4q21-q25	4q22.1	166490	SPP1, OPN	Secreted phosphoprotein-1 (osteopontin, bone sialoprotein)	SPP1	6696	ENSG00000118785			Spp1 (MGI:98389)
chr4	88007646	88077778	4q21-q23	4q22.1	173910	PKD2	Polycystin-2	PKD2	5311	ENSG00000118762		Polycystic kidney disease 2, 613095 (3), Autosomal dominant	Pkd2 (MGI:1099818)
chr4	88090263	88231625	4q22	4q22.1	603756	ABCG2, BCRP, ABCP, UAQTL1, GOUT1	ATP-binding cassette, subfamily G, member 2	ABCG2	9429	ENSG00000118777		[Junior blood group system], 614490 (3); [Uric acid concentration, serum, QTL1], 138900 (3), ?Autosomal dominant	Abcg2 (MGI:1347061)
chr4	88257608	88284830	4q22.1	4q22.1	611065	PPM1K, PP2CM, PTMP, MSUDMV	Protein phosphatase, PP2C domain-containing, 1K	PPM1K	152926	ENSG00000163644	mutation identified in 1 MSUDMV family	?Maple syrup urine disease, mild variant, 615135 (3)	Ppm1k (MGI:2442111)
chr4	88456603	88506169	4q22.2-q22.3	4q22.1	608242	HERC5, CEB1	HECT domain and RCC1-like domain 5	HERC5	51191	ENSG00000138646			
chr4	88520977	88523800	4q22.1	4q22.1	610662	PIGY, HPMRS6	Phosphatidylinositol glycan, class Y	PIGY	84992	ENSG00000255072		Hyperphosphatasia with mental retardation syndrome 6, 616809 (3), Autosomal recessive	Pigyl (MGI:1913518)
chr4	88592422	88709302	4q22.1	4q22.1	605200	HERC3	HECT domain and RCC1-like domain 3	HERC3	8916	ENSG00000138641			Herc3 (MGI:1921248)
chr4	88695912	88698234	4q21-q22	4q22.1	612203	NAP1L5, DRLM	Nucleosome assembly protein 1-like 5	NAP1L5	266812	ENSG00000177432			Nap1l5 (MGI:1923555)
chr4	88709788	88730102	4q22.1	4q22.1	613300	FAM13AOS, FAM13A1OS	FAM13A opposite strand	FAM13A-AS1	285512		overlaps with FAM13A		
chr4	88725953	89111397	4q22.1	4q22.1	613299	FAM13A, FAM13A1, KIAA0914	Family with sequence similarity 13, member A	FAM13A	10144	ENSG00000138640	overlaps with FAM13AOS		
chr4	89112816	89114900	4q22.1	4q22.1	612973	TIGD2	TIGGER transposable element-derived gene 2	TIGD2	166815	ENSG00000180346			Tigd2 (MGI:1915390)
chr4	89237665	89308009	4q22.1	4q22.1	611241	GPRIN3, GRIN3	G protein-regulated inducer of neurite outgrowth 3	GPRIN3	285513	ENSG00000185477			Gprin3 (MGI:1924785)
chr4	89724098	89838323	4q21	4q22.1	163890	SNCA, NACP, PARK1, PARK4	Synuclein, alpha (non A4 component of amyloid precursor)	SNCA	6622	ENSG00000145335		Dementia, Lewy body, 127750 (3), Autosomal dominant; Parkinson disease 1, 168601 (3), Autosomal dominant; Parkinson disease 4, 605543 (3), Autosomal dominant	Snca (MGI:1277151)
chr4	89879538	89954628	4q22.1	4q22.1	601456	MMRN1, ECM	Multimerin 1	MMRN1	22915	ENSG00000138722			Mmrn1 (MGI:1918195)
chr4	92303621	93810414	4q22	4q22.1-q22.2	602368	GRID2, SCAR18	Glutamate receptor, ionotropic, delta-2	GRID2	2895	ENSG00000152208		Spinocerebellar ataxia, autosomal recessive 18, 616204 (3), Autosomal recessive	Grid2 (MGI:95813)
chr4	93828926	93829990	4q22	4q22.2	601461	ATOH1, ATH1	Atonal, Drosophila, homolog of, 1	ATOH1	474	ENSG00000172238			Atoh1 (MGI:104654)
chr4	94207607	94291291	4q22-q23	4q22.3	612761	SMARCAD1, KIAA1122, ETL1, HEL1, ADERM, BASNS	SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily A, DEAD/H box-containing, 1	SMARCAD1	56916	ENSG00000163104		Adermatoglyphia, 136000 (3), Autosomal dominant; Basan syndrome, 129200 (3), Autosomal dominant	Smarcad1 (MGI:95453)
chr4	94298555	94342875	4q21-q22	4q22.3	602598	HPGDS, PGDS	Prostaglandin D2 synthase, hematopoietic	HPGDS	27306	ENSG00000163106			Hpgds (MGI:1859384)
chr4	94451856	94668226	4q22	4q22.3	605904	ENH	Enigma-like LIM domain protein	PDLIM5	10611	ENSG00000163110			Pdlim5 (MGI:1927489)
chr4	94757976	95158452	4q23-q24	4q22.3	603248	BMPR1B, ALK6, AMDD, BDA2, BDA1D	Bone morphogenetic protein receptor, type IB	BMPR1B	658	ENSG00000138696		Acromesomelic dysplasia, Demirhan type, 609441 (3), Autosomal recessive; Brachydactyly, type A1, D, 616849 (3), Autosomal dominant; Brachydactyly, type A2, 112600 (3), Autosomal dominant	Bmpr1b (MGI:107191)
chr4	95162503	95549209	4q21-q23	4q22.3	603610	UNC5C, UNC5H3	UNC5, C. elegans, homolog of, C	UNC5C	8633	ENSG00000182168			Unc5c (MGI:1095412)
chr4	95840087	95841473	4q22-q23	4q22.3	179061	PDHA2	Pyruvate dehydrogenase, E1-alpha polypeptide, testis specific form	PDHA2	5161	ENSG00000163114			
chr4	97900000	100100000	4q23		617478	DNAJB14	DNAJ/HSP40 homolog, subfamily B, member 14						
chr4	97900000	100100000	4q23		181600	TYS, HRZ	Sclerotylosis	TYS	7303			Huriez syndrome, 181600 (2), Autosomal dominant	
chr4	98261375	98443860	4q21-q25	4q23	179502	RAP1GDS1	RAP1, GTP-GDP dissociation stimulator 1	RAP1GDS1	5910	ENSG00000138698	fusion partner with NUP98 in ALL	Lymphocytic leukemia, acute T-cell (3)	Rap1gds1 (MGI:2385189)
chr4	98470366	98658660	4q23	4q23	613136	TSPAN5, NET4	Tetraspanin 5	TSPAN5	10098	ENSG00000168785			Tspan5 (MGI:1928096)
chr4	98871683	98930636	4q21-q25	4q23	133440	EIF4E, EIF4EL1, AUTS19	Eukaryotic translation initiation factor 4E	EIF4E	1977	ENSG00000151247	pseudogene on 20	{Autism, susceptibility to, 19}, 615091 (3)	Eif4e (MGI:95305)
chr4	98995636	99063108	4q23	4q23	610151	METAP1, KIAA0094	Methionyl aminopeptidase 1	METAP1	23173	ENSG00000164024			Metap1 (MGI:1922874)
chr4	99070977	99088787	4q21-q25	4q23	103710	ADH5, FDH	Alcohol dehydrogenase (class III), chi polypeptide	ADH5	128	ENSG00000197894			Adh5 (MGI:87929)
chr4	99123656	99144297	4q22	4q23	103740	ADH4	Alcohol dehydrogenase (class II), pi polypeptide	ADH4	127	ENSG00000198099			Adh4 (MGI:1349472)
chr4	99202637	99219245	4q23-q24	4q23	103735	ADH6	Alcohol dehydrogenase 6 (aldehyde reductase)	ADH6	130	ENSG00000172955			
chr4	99276365	99291027	4q22	4q23	103700	ADH1A, ADH1	Alcohol dehydrogenase IA (class I), alpha polypeptide	ADH1A	124	ENSG00000187758			
chr4	99306386	99321441	4q22	4q23	103720	ADH1B, ADH2	Alcohol dehydrogenase IB (class I), beta polypeptide	ADH1B	125	ENSG00000196616		{Aerodigestive tract cancer, squamous cell, alcohol-related, protection against} (3); {Alcohol dependence, protection against}, 103780 (3), Multifactorial	
chr4	99336491	99353044	4q22	4q23	103730	ADH1C, ADH3	Alcohol dehydrogenase IC (class I), gamma polypeptide	ADH1C	126	ENSG00000248144		{Alcohol dependence, protection against}, 103780 (3), Multifactorial; {Parkinson disease, susceptibility to}, 168600 (3), Isolated cases, Multifactorial	Adh1 (MGI:87921)
chr4	99412260	99435509	4q23-q24	4q23	600086	ADH7	Alcohol dehydrogenase-7	ADH7	131	ENSG00000196344			Adh7 (MGI:87926)
chr4	99546706	99564056	4q23	4q23	616013	TRMT10A, RG9MTD2, MSSGM1	tRNA methyltransferase 10, S. cerevisiae, homolog of, A	TRMT10A	93587	ENSG00000145331		Microcephaly, short stature, and impaired glucose metabolism 1, 616033 (3), Autosomal recessive	Trmt10a (MGI:1920421)
chr4	99564077	99623996	4q22-q24	4q23	157147	MTP	Microsomal triglyceride transfer protein, 88kD	MTTP	4547	ENSG00000138823		Abetalipoproteinemia, 200100 (3), Autosomal recessive; {Metabolic syndrome, protection against}, 605552 (3), Autosomal dominant	Mttp (MGI:106926)
chr4	99636528	99657805	4q23	4q23	617881	C4orf54, LOC285556, FOPV	Chromosome 4 open reading frame 54	C4orf54	285556	ENSG00000248713			1110002E22Rik (MGI:1915066)
chr4	99816823	99872289	4q25-q27	4q23	605768	DAPP1, BAM32	Dual adaptor of phosphotyrosine and 3-phosphoinositides 1	DAPP1	27071	ENSG00000070190			Dapp1 (MGI:1347063)
chr4	99878337	99894545	4q23	4q23	603296	LAMTOR3, MP1, MAPBP	Late endosomal/lysosomal adaptor, mitogen-activated protein kinase and mammalian target of rapamycin activator 3	LAMTOR3	8649	ENSG00000109270			Lamtor3 (MGI:1929467)
chr4	99948086	99950354	4q24	4q23	142763	H2AZ	H2AZ histone	H2AFZ	3015	ENSG00000164032			H2afz (MGI:1888388)
chr4	100100000	138500000	4q24-q28		613340	HWE2	Epilepsy, hot water, 2		100415904		between D4S1572 and D4S2277	Epilepsy, hot water, 2, 613340 (2)	
chr4	100100000	106700000	4q24		157300	MGR1, MA	Migraine with or without aura, susceptibility to, 1		192115			{Migraine with or without aura, susceptibility to, 1}, 157300 (2), Autosomal dominant	
chr4	100100000	106700000	4q24		615312	OCA5	Albinism, oculocutaneous, type V	OCA5	101926885		max lod at D4S961	Albinism, oculocutaneous, type V, 615312 (2), Autosomal recessive	
chr4	100185869	100190497	4q24-q25	4q24	607730	DDIT4L, REDD2	DNA damage-inducible transcript 4-like	DDIT4L	115265	ENSG00000145358			Ddit4l (MGI:1920534)
chr4	101023429	101348294	4q24-q25	4q24	114105	PPP3CA, PPP2B, CALNA, CNA1, IECEE1	Protein phosphatase-3 (formerly 2B), catalytic subunit, alpha isoform (calcineurin A alpha)	PPP3CA	5530	ENSG00000138814		Epileptic encephalopathy, infantile or early childhood, 1, 617711 (3), Autosomal dominant	Ppp3ca (MGI:107164)
chr4	101790481	102074811	4q22-q24	4q24	610292	BANK1, FLJ20706, BANK	B-cell scaffold protein with ankyrin repeats 1	BANK1	55024	ENSG00000153064			Bank1 (MGI:2442120)
chr4	102251040	102345497	4q22-q24	4q24	608732	SLC39A8, BIGM103, CDG2N	Solute carrier family 39 (zinc transporter), member 8	SLC39A8	64116	ENSG00000138821		Congenital disorder of glycosylation, type IIn, 616721 (3), Autosomal recessive	Slc39a8 (MGI:1914797)
chr4	102501265	102617301	4q23-q24	4q24	164011	NFKB1, CVID12	Nuclear factor of kappa light chain gene enhancer in B-cells 1 (p105)	NFKB1	4790	ENSG00000109320		Immunodeficiency, common variable, 12, 616576 (3), Autosomal dominant	Nfkb1 (MGI:97312)
chr4	102631485	102760993	4q22-q25	4q24	609489	MANBA, MANB1	Mannosidase, beta A, lysosomal	MANBA	4126	ENSG00000109323	linked in mouse to Adl-3	Mannosidosis, beta, 248510 (3), Autosomal recessive	Manba (MGI:88175)
chr4	102794382	102868892	4q24	4q24	602963	UBE2D3, UBCH5C	Ubiquitin-conjugating enzyme E2D 3	UBE2D3	7323	ENSG00000109332			Ube2d3 (MGI:1913355)
chr4	102868977	102892806	4q22-q24	4q24	611507	CISD2, WFS2, ZCD2, ERIS	CDGSH iron sulfur domain protein 2	CISD2	493856	ENSG00000145354		Wolfram syndrome 2, 604928 (3), Autosomal recessive	Cisd2 (MGI:1914256)
chr4	102885047	103019738	4q24	4q24	611527	NHEDC1	Na+/H+ exchanger domain-containing protein 1	SLC9B1	150159	ENSG00000164037			Slc9b1 (MGI:1921696)
chr4	103018032	103077370	4q24	4q24	611789	NHEDC2, NHA2	NA+/H+ exchanger domain-containing protein 2	SLC9B2	133308	ENSG00000164038			Slc9b2 (MGI:2140077)
chr4	103105805	103198408	4q24-q25	4q24	117143	CENPE, MCPH13	Centromere autoantigen E, 312kD	CENPE	1062	ENSG00000138778	mutation identified in 1 MCPH13 family	?Microcephaly 13, primary, autosomal recessive, 616051 (3), Autosomal recessive	Cenpe (MGI:1098230)
chr4	103589467	103719815	4q25	4q24	162332	TACR3, NK3R, HH11	Tachykinin receptor 3	TACR3	6870	ENSG00000169836		Hypogonadotropic hypogonadism 11 with or without anosmia, 614840 (3), Autosomal recessive	Tacr3 (MGI:892968)
chr4	104468305	104494966	4q22-q24	4q24	611645	CXXC4, IDAX	CXXC finger protein 4	CXXC4	80319	ENSG00000168772			Cxxc4 (MGI:2442112)
chr4	105145874	105279802	4q24	4q24	612839	TET2, KIAA1546, MDS	TET oncogene family, member 2	TET2	54790	ENSG00000168769		Myelodysplastic syndrome, somatic, 614286 (3)	Tet2 (MGI:2443298)
chr4	105369076	105474069	4q25	4q24	609988	PPA2, SCFI, SCFAI	Pyrophosphatase, inorganic, 2	PPA2	27068	ENSG00000138777	mutation identified in 1 SCFAI family	?Sudden cardiac failure, alcohol-induced, 617223 (3), Autosomal recessive; Sudden cardiac failure, infantile, 617222 (3), Autosomal recessive	Ppa2 (MGI:1922026)
chr4	105682626	105708724	4q24	4q24	611355	INTS12, INT12	Integrator complex subunit 12	INTS12	57117	ENSG00000138785			Ints12 (MGI:1919043)
chr4	105708777	105847725	4q24	4q24	615912	GSTCD	Glutathione S-transferase C-terminal domain-containing protein	GSTCD	79807	ENSG00000138780			Gstcd (MGI:1914803)
chr4	105895439	105971670	4q24	4q24	610306	NPNT, POEM	Nephronectin	NPNT	255743	ENSG00000168743			Npnt (MGI:2148811)
chr4	106041599	106316703	4q24	4q24	616899	TBCK, IHPRF3	TBC1 domain-containing kinase	TBCK	93627	ENSG00000145348		Hypotonia, infantile, with psychomotor retardation and characteristic facies 3, 616900 (3), Autosomal recessive	Tbck (MGI:2445052)
chr4	106315609	106349224	4q24	4q24	603605	AIMP1, SCYE1, EMAP2, EMAPII, HLD3	ARS-interacting multifunctional protein 1	AIMP1	9255	ENSG00000164022		Leukodystrophy, hypomyelinating, 3, 260600 (3), Autosomal recessive	Aimp1 (MGI:102774)
chr4	106700000	113200000	4q25		611494	ATFB5	Atrial fibrillation, familial, 5		100188842		association with rs2200733 and rs10033464	{Atrial fibrillation, familial, 5}, 611494 (2)	
chr4	106700000	113200000	4q25		152430	LGV1	Longevity 1, QTL		140802		maximum lod at D4S1564	[Longevity 1], 152430 (2)	
chr4	107613665	107720262	4q24	4q25	603262	PAPSS1, ATPSK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1 (ATP sulfurylase/APS kinase-1)	PAPSS1	9061	ENSG00000138801			Papss1 (MGI:1330587)
chr4	107823644	107915046	4q25	4q25	611574	SGMS2, SMS2	Sphingomyelin synthase 2	SGMS2	166929	ENSG00000164023			Sgms2 (MGI:1921692)
chr4	107931548	107953460	4q25	4q25	610670	CYP2U1, SPG56	Cytochrome P450, family 2, subfamily U, polypeptide 1	CYP2U1	113612	ENSG00000155016		Spastic paraplegia 56, autosomal recessive, 615030 (3), Autosomal recessive	Cyp2u1 (MGI:1918769)
chr4	107989713	108035174	4q22-q26	4q25	601609	HADHSC, SCHAD, HHF4	L-3-hydroxyacyl-CoA dehydrogenase, short chain	HADH	3033	ENSG00000138796		3-hydroxyacyl-CoA dehydrogenase deficiency, 231530 (3), Autosomal recessive; Hyperinsulinemic hypoglycemia, familial, 4, 609975 (3), Autosomal recessive	Hadh (MGI:96009)
chr4	108047544	108168955	4q23-q25	4q25	153245	LEF1	Lymphoid enhancer-binding factor-1	LEF1	51176	ENSG00000138795		Sebaceous tumors, somatic (3)	Lef1 (MGI:96770)
chr4	108620557	108630483	4q25	4q25	616862	RPL34	Ribosomal protein L34	RPL34	6164	ENSG00000109475			Rpl34-ps2 (MGI:3648994)
chr4	108742039	108763078	4q25	4q25	614682	AGXT2L1	Alanine-glyoxylate aminotransferase 2-like 1	ETNPPL	64850	ENSG00000164089			Etnppl (MGI:1919010)
chr4	108808724	109302736	4q25	4q25	610004	COL25A1, CLAC, CFEOM5	Collagen, type XXV, alpha-1 polypeptide	COL25A1	84570	ENSG00000188517		Fibrosis of extraocular muscles, congenital, 5, 616219 (3), Autosomal recessive	Col25a1 (MGI:1924268)
chr4	109433714	109540458	4q25	4q25	607184	SEC24B	Sec24-related gene family, member B	SEC24B	10427	ENSG00000138802			Sec24b (MGI:2139764)
chr4	109688628	109703472	4q25-q25	4q25	601532	CASP6, MCH2	Caspase 6, apoptosis-related cysteine protease	CASP6	839	ENSG00000138794			Casp6 (MGI:1312921)
chr4	109709988	109730085	4q25	4q25	611652	PLA2G12A, GXII, ROSSY	Phospholipase A2, Group XIIA	PLA2G12A	81579	ENSG00000123739			Pla2g12a (MGI:1913600)
chr4	109731220	109802224	4q25	4q25	217030	CFI, FI, AHUS3, ARMD13	Complement factor I	CFI	3426	ENSG00000205403	40kb distal to EGF	Complement factor I deficiency, 610984 (3), Autosomal recessive; {Hemolytic uremic syndrome, atypical, susceptibility to, 3}, 612923 (3), Autosomal dominant; {Macular degeneration, age-related, 13, susceptibility to}, 615439 (3), Autosomal dominant	Cfi (MGI:105937)
chr4	109815509	109824736	4q25	4q25	606468	NOLA1, GAR1	Nucleolar protein family A, member 1	GAR1	54433	ENSG00000109534			
chr4	109827993	109844706	4q	4q25	605224	RRH	Rhodopsin homolog, retinal pigment epithelium-derived (peropsin)	RRH	10692	ENSG00000180245			Rrh (MGI:1097709)
chr4	109848181	109872314	4q25	4q25	615004	LRIT3, FIGLER4, CSNB1F	Leucine-rich repeat, immunoglobulin-like, and transmembrane domains-containing protein 3	LRIT3	345193	ENSG00000183423		Night blindness, congenital stationary (complete), 1F, autosomal recessive, 615058 (3), Autosomal recessive	Lrit3 (MGI:2685267)
chr4	109912882	110013078	4q25	4q25	131530	EGF, URG, HOMG4	Epidermal growth factor (urogastrone)	EGF	1950	ENSG00000138798	linked to ADH3; cen-ADH3-EGF-IL2-qter	Hypomagnesemia 4, renal, 611718 (3)	Egf (MGI:95290)
chr4	110045850	110199198	4q25	4q25	611546	ELOVL6, LCE, FACE	Elongation of very long chain fatty acids-like 6	ELOVL6	79071	ENSG00000170522			Elovl6 (MGI:2156528)
chr4	110476072	110563336	4q25	4q25	138297	ENPEP	Glutamyl aminopeptidase (aminopeptidase A)	ENPEP	2028	ENSG00000138792			Enpep (MGI:106645)
chr4	110595512	110615457	4q25	4q25	617286	PANCR	PITX2 adjacent noncoding RNA	PANCR	110231149				
chr4	110617422	110642122	4q25-q26	4q25	601542	PITX2, IDG2, RIEG1, RGS, IGDS2, ASGD4	Paired-like homeodomain transcription factor-2	PITX2	5308	ENSG00000164093		Anterior segment dysgenesis 4, 137600 (3), Autosomal dominant; Axenfeld-Rieger syndrome, type 1, 180500 (3), Autosomal dominant; Ring dermoid of cornea, 180550 (3), Autosomal dominant	Pitx2 (MGI:109340)
chr4	110860581	110860646	4q25	4q25	615520	MIR297	Micro RNA 297	MIR297	100126354				
chr4	112231738	112273109	4q25	4q25	610851	C4orf16, GBAR, 2C18	Gamma-1 adaptin brefeldin-A resistance protein	AP1AR	55435	ENSG00000138660			Ap1ar (MGI:2384822)
chr4	112275625	112285902	4q25	4q25	609028	TIFA, T2BP	TRAF-interacting protein with forkhead-associated domain	TIFA	92610	ENSG00000145365			Tifa (MGI:2182965)
chr4	112285994	112442617	4q25	4q25	607347	ALPK1, LAK, KIAA1527	Alpha-kinase 1	ALPK1	80216	ENSG00000073331			Alpk1 (MGI:1918731)
chr4	112513515	112516171	4q25	4q25	606624	NEUROG2, NGN2, ATOH4	Neurogenin 2	NEUROG2	63973	ENSG00000178403			Neurog2 (MGI:109619)
chr4	112636963	112657591	4q25	4q25	612026	LARP7, PIP7S, ALAZS	La ribonucleoprotein domain family, member 7	LARP7	51574	ENSG00000174720		Alazami syndrome, 615071 (3), Autosomal recessive	Larp7 (MGI:107634)
chr4	112647873	112647940	4q25	4q25	614600	MIR367	Micro RNA 367	MIR367	442912				
chr4	112648003	112648070	4q25	4q25	614599	MIR302D	Micro RNA 302D	MIR302D	442896				
chr4	112648182	112648250	4q25	4q25	614596	MIR302A	Micro RNA 302A	MIR302A	407028				
chr4	112648362	112648429	4q25	4q25	614598	MIR302C	Micro RNA 302C	MIR302C	442895				
chr4	112648484	112648556	4q25	4q25	614597	MIR302B	Micro RNA 302B	MIR302B	442894				
chr4	112706017	113383739	4q25-q27	4q25-q26	106410	ANK2, LQT4	Ankyrin-2, nonerythrocytic	ANK2	287	ENSG00000145362		Cardiac arrhythmia, ankyrin-B-related, 600919 (3), Autosomal dominant; Long QT syndrome 4, 600919 (3), Autosomal dominant	
chr4	113451031	113762176	4q26	4q26	607708	CAMK2D	Calcium/calmodulin-dependent protein kinase II-delta	CAMK2D	817	ENSG00000145349			Camk2d (MGI:1341265)
chr4	113899928	113980463	4q26	4q26	610010	ARSJ	Arylsulfatase J	ARSJ	79642	ENSG00000180801			Arsj (MGI:2443513)
chr4	114598401	114687913	4q26	4q26	601291	UGT8, CGT	UDP glycosyltransferase 8 (cerebroside synthase)	UGT8	7368	ENSG00000174607			Ugt8a (MGI:109522)
chr4	114824121	115114132	4q25-q26	4q26	615039	NDST4	N-deacetylase/N-sulfotransferase 4	NDST4	64579	ENSG00000138653			Ndst4 (MGI:1932545)
chr4	117083553	117085579	4q26	4q26	617505	TRAM1L1	Translocation-associated membrane protein 1-like 1	TRAM1L1	133022	ENSG00000174599			Tram1l1 (MGI:2443503)
chr4	118280037	118353041	4q25-q26	4q26	606709	PRSS12, BSSP3, MRT1	Protease, serine, 12	PRSS12	8492	ENSG00000164099		Mental retardation, autosomal recessive 1, 249500 (3), Autosomal recessive	Prss12 (MGI:1100881)
chr4	118685369	118712269	4q26	4q26	616504	METTL14, KIAA1627	Methyltransferase-like 14	METTL14	57721	ENSG00000145388			Mettl14 (MGI:2442926)
chr4	118722822	118838682	4q26	4q26	607186	SEC24D, KIAA0755, CLCRP2	Sec24-related gene family, member D	SEC24D	9871	ENSG00000150961		Cole-Carpenter syndrome 2, 616294 (3), Autosomal recessive	Sec24d (MGI:1916858)
chr4	119135783	119187788	4q26-q27	4q26	605602	MYOZ2, CMH16	Myozenin 2	MYOZ2	51778	ENSG00000172399		Cardiomyopathy, hypertrophic, 16, 613838 (3), Autosomal dominant	Myoz2 (MGI:1913063)
chr4	119212582	119295517	4q26	4q26	617431	USP53, KIAA1350	Ubiquitin-specific peptidase 53	USP53	54532	ENSG00000145390			Usp53 (MGI:2139607)
chr4	119317249	119322160	4q28-q31	4q26	134640	FABP2	Fatty acid-binding protein, intestinal	FABP2	2169	ENSG00000145384			Fabp2 (MGI:95478)
chr4	119494394	119628825	4q26	4q26	603310	PDE5A	Phosphodiesterase 5A	PDE5A	8654	ENSG00000138735			Pde5a (MGI:2651499)
chr4	119900000	122800000	4q27		611598	CELIAC6, AIS5	Celiac disease, susceptibility to, 6		100188846			{Autoimmune disease, susceptibility to, 5}, 611598 (2); {Celiac disease, susceptibility to, 6}, 611598 (2)	
chr4	119900000	122800000	4q27		612622	IDDM23	Diabetes mellitus, insulin-dependent, 23		100271697		associated with rs6534347	{Diabetes mellitus, insulin-dependent, 23}, 612622 (2)	
chr4	119900000	130100000	4q27-q28.2		614333	MRT29	Mental retardation, autosomal recessive 29		100852393		between rs10518325 and rs10518608	Mental retardation, autosomal recessive 29, 614333 (2), Autosomal recessive	
chr4	120059421	120066857	4q27	4q27	601467	MAD2L1	Mitotic arrest deficient, yeast, homolog-like 1	MAD2L1	4085	ENSG00000164109	previously mapped to 5q23-q31		Mad2l1 (MGI:1860374)
chr4	120684905	120922865	4q27	4q27	614161	PRDM5, BCS2	PR domain-containing protein 5	PRDM5	11107	ENSG00000138738		Brittle cornea syndrome 2, 614170 (3), Autosomal recessive	Prdm5 (MGI:1918029)
chr4	121029292	121072517	4q27	4q27	616506	NDNF, C4orf31, NORD	Neuron-derived neurotrophic factor	NDNF	79625	ENSG00000173376			Ndnf (MGI:1915419)
chr4	121667996	121696993	4q26-q28	4q27	131230	ANXA5, ENX2, RPRGL3	Annexin A5 (endonexin II)	ANXA5	308	ENSG00000164111		{Pregnancy loss, recurrent, susceptibility to, 3}, 614391 (3), Autosomal dominant	Anxa5 (MGI:106008)
chr4	121801316	121817020	4q27	4q27	606180	EXOSC9, PMSCL1	Exosome component 9	EXOSC9	5393	ENSG00000123737			Exosc9 (MGI:1355319)
chr4	121816443	121824000	4q27	4q27	123835	CCNA, CCN1	Cyclin A	CCNA2	890	ENSG00000145386			Ccna2 (MGI:108069)
chr4	121824328	121870496	4q27	4q27	607590	BBS7	BBS7 gene	BBS7	55212	ENSG00000138686		Bardet-Biedl syndrome 7, 615984 (3), Autosomal recessive	Bbs7 (MGI:1918742)
chr4	121875979	121952059	4q27	4q27	602345	TRPC3, TRP3, SCA41	Transient receptor potential cation channel, subfamily C, member 3	TRPC3	7222	ENSG00000138741	mutation identified in one SCA41 patient	?Spinocerebellar ataxia 41, 616410 (3), Autosomal dominant	Trpc3 (MGI:109526)
chr4	122152332	122362758	4q27	4q27	611565	KIAA1109, ALKKUCS	KIAA1109 gene	KIAA1109	84162	ENSG00000138688		Alkuraya-Kucinskas syndrome, 617822 (3), Autosomal recessive	4932438A13Rik (MGI:2444631)
chr4	122378965	122429814	4q27	4q27	614130	ADAD1, TENR	Adenosine deaminase domain-containing protein 1, testis-specific	ADAD1	132612	ENSG00000164113			Adad1 (MGI:103258)
chr4	122449478	122456494	4q26-q27	4q27	147680	IL2	Interleukin-2	IL2	3558	ENSG00000109471			Il2 (MGI:96548)
chr4	122612627	122621056	4q26-q27	4q27	605384	IL21, CVID11	Interleukin 21	IL21	59067	ENSG00000138684	mutation identified in 1 CVID11 patient	?Immunodeficiency, common variable, 11, 615767 (3), Autosomal recessive	Il21 (MGI:1890474)
chr4	122700436	122744942	4q27	4q27	610683	BBS12, FLJ35630, C4orf24	BBS12 gene	BBS12	166379	ENSG00000181004	1Mb centromeric to BBS	Bardet-Biedl syndrome 12, 615989 (3), Autosomal recessive	Bbs12 (MGI:2686651)
chr4	122800000	154600000	4q28-q31		111800	SF	Stoltzfus blood group		6420		~25cM from MNSs	[Blood group, Stoltzfus system], 111800 (2)	
chr4	122826707	122898234	4q25-q27	4q28.1	134920	FGF2, FGFB	Fibroblast growth factor-2 (basic)	FGF2	2247	ENSG00000138685	many alternate names		Fgf2 (MGI:95516)
chr4	122923069	123319449	4q28.1	4q28.1	613940	SPATA5, SPAF, EHLMRS	Spermatogenesis-associated protein 5	SPATA5	166378	ENSG00000145375		Epilepsy, hearing loss, and mental retardation syndrome, 616577 (3), Autosomal recessive	Spata5 (MGI:1927170)
chr4	123396790	123403759	4q28.1	4q28.1	602465	SPRY1	Sprouty, Drosophila, homolog of	SPRY1	10252	ENSG00000164056			Spry1 (MGI:1345139)
chr4	125314912	125492931	4q28.1	4q28.1	612411	FAT4, VMLDS2, HKLLS2	FAT tumor suppressor, Drosophila, homolog of, 4	FAT4	79633	ENSG00000196159		Hennekam lymphangiectasia-lymphedema syndrome 2, 616006 (3), Autosomal recessive; Van Maldergem syndrome 2, 615546 (3), Autosomal recessive	Fat4 (MGI:3045256)
chr4	127623270	127716778	4q28	4q28.1	610621	INTU, KIAA1284, PDZK6, SRTD20, OFD17	Inturned, Drosophila, homolog of	INTU	27152	ENSG00000164066	mutation identified in 1 SRTD20 patient and 1 OFD17 patient	?Orofaciodigital syndrome XVII, 617926 (3), Autosomal recessive; ?Short-rib throacic dysplasia 20 with polydactyly, 617925 (3), Autosomal recessive	Intu (MGI:2443752)
chr4	127730371	127774298	4q28.1	4q28.1	610796	SLC25A31, ANT4, AAC4	Solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 31	SLC25A31	83447	ENSG00000151475			Slc25a31 (MGI:1920583)
chr4	127880860	127899223	4q27-q28	4q28.1	605031	PLK4, STK18, SAK, MCCRP2	Polo-like kinase 4 (serine/threonine protein kinase-18)	PLK4	10733	ENSG00000142731		Microcephaly and chorioretinopathy, autosomal recessive, 2, 616171 (3), Autosomal recessive	Plk4 (MGI:101783)
chr4	127917804	127966031	4q28.1-q28.2	4q28.2	611124	MFSD8, MGC33302, CLN7, CCMD	Major facilitator superfamily domain-containing protein 8	MFSD8	256471	ENSG00000164073		Ceroid lipofuscinosis, neuronal, 7, 610951 (3), Autosomal recessive; Macular dystrophy with central cone involvement, 616170 (3), Autosomal recessive	Mfsd8 (MGI:1919425)
chr4	128269236	128288828	4q26	4q28.2	607735	PGRMC2	Progesterone receptor membrane component 2	PGRMC2	10424	ENSG00000164040			Pgrmc2 (MGI:1918054)
chr4	128809622	128875223	4q28.2	4q28.2	610514	PHF17, JADE1	PHD finger protein 17	JADE1	79960	ENSG00000077684			Jade1 (MGI:1925835)
chr4	128874389	129093606	4q28.2	4q28.2	611399	SCLT1, CAP1A	Sodium channel and clathrin linker 1	SCLT1	132320	ENSG00000151466			Sclt1 (MGI:1914411)
chr4	133149289	133208605	4q28.3	4q28.3	608286	PCDH10, KIAA1400	Protocadherin 10	PCDH10	57575	ENSG00000138650			Pcdh10 (MGI:1338042)
chr4	137518917	137532529	4q31	4q28.3	608287	PCDH18, KIAA1562	Protocadherin 18	PCDH18	54510	ENSG00000189184			Pcdh18 (MGI:1920423)
chr4	138164093	138242348	4q28.3	4q28.3	607933	SLC7A11, XCT	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	SLC7A11	23657	ENSG00000151012			Slc7a11 (MGI:1347355)
chr4	138500000	154600000	4q31		609782	AAA2	Aortic aneurysm, familial abdominal 2		100505390		max lod at D4S1644	Aortic aneurysm, familial abdominal 2, 609782 (2)	
chr4	138500000	154600000	4q31		605428	DFNB26	Deafness, autosomal recessive 26	DFNB26	23714			Deafness, autosomal recessive 26, 605428 (2), Autosomal recessive	
chr4	138500000	182300000	4q31-q34		609985	PAND3	Panic disorder 3		677663		max lod at D4S413	Panic disorder 3, 609985 (2)	
chr4	138500000	182300000	4q31-q34		607857	PSORS9	Psoriasis susceptibility 9	PSORS9	359825		max lod at D4S1597	{Psoriasis susceptibility 9}, 607857 (2)	
chr4	138500000	154600000	4q31		612224	STQTL12	Stature quantitative trait locus 12		100301523		associated with rs6854783	{Stature QTL 12}, 612224 (2)	
chr4	139015758	139045938	4q31.1	4q31.1	608468	CCRN4L, CCR4L, CCR4	Carbon catabolite repression 4-like	NOCT	25819	ENSG00000151014			Noct (MGI:109382)
chr4	139289916	139302550	4q28.2-q31.1	4q31.1	603844	NDUFC1	NADH-ubiquinone oxidoreductase 1, subcomplex C1	NDUFC1	4717	ENSG00000109390			Ndufc1 (MGI:1913627)
chr4	139301466	139390780	4q31.1	4q31.1	608000	NAA15, NARG1, NATH, MRD50	N-alpha-acetyltransferase 15, NatA auxiliary subunit	NAA15	80155	ENSG00000164134		Mental retardation, autosomal dominant 50, 617787 (3), Autosomal dominant	Naa15 (MGI:1922088)
chr4	139453231	139475915	4q31.1	4q31.1	605950	RAB33B, SMC2	Ras-associated protein RAB33B	RAB33B	83452	ENSG00000172007		Smith-McCort dysplasia 2, 615222 (3), Autosomal recessive	Rab33b (MGI:1330805)
chr4	139495933	139556768	4q31.1	4q31.1	606594	SETD7, SET7, KIAA1717	SET domain-containing protein 7	SETD7	80854	ENSG00000145391			Setd7 (MGI:1920501)
chr4	139665724	139754607	4q28-q31	4q31.1	601733	MGST2, GST2	Microsomal glutathione S-transferase 2	MGST2	4258	ENSG00000085871			Mgst2 (MGI:2448481)
chr4	139716390	140154078	4q28.3	4q31.1	608991	MAML3, MAM2, KIAA1816	Mastermind-like 3	MAML3	55534	ENSG00000196782			Maml3 (MGI:2389461)
chr4	140388452	140427660	4q31.1	4q31.1	601858	CLGN	Calmegin	CLGN	1047	ENSG00000153132			Clgn (MGI:107472)
chr4	140442256	140499045	4q31.1	4q31.1	610310	LOC152586	LOC152586 gene	MGAT4D	152586	ENSG00000205301			Mgat4d (MGI:1914805)
chr4	140524145	140553769	4q31.1	4q31.1	610196	ELMOD2	ELMO domain-containing protein 2	ELMOD2	255520	ENSG00000179387			Elmod2 (MGI:2445165)
chr4	140555769	140568913	4q31	4q31.1	113730	UCP1	Uncoupling protein 1 (mitochondrial, proton carrier)	UCP1	7350	ENSG00000109424		{Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Ucp1 (MGI:98894)
chr4	141220293	141234696	4q31.1-q31.2	4q31.21	609550	ZNF330, NOA36	Zinc finger protein 330	ZNF330	27309	ENSG00000109445			Zfp330 (MGI:1353574)
chr4	141636595	141733986	4q31	4q31.21	600554	IL15	Interleukin-15	IL15	3600	ENSG00000164136			Il15 (MGI:103014)
chr4	143336829	143474564	4q13.1	4q31.21	604439	GAB1	Grb2-associated binding protein 1	GAB1	2549	ENSG00000109458			Gab1 (MGI:108088)
chr4	143513462	143557488	4q31.1-q31.2	4q31.21	603375	SMARCA5, SNF2H	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A, member 5	SMARCA5	8467	ENSG00000153147			Smarca5 (MGI:1935129)
chr4	143577406	143700674	4q31.2	4q31.21	608946	FREM3	FRAS1-related extracellular matrix protein 3	FREM3	166752	ENSG00000183090			Frem3 (MGI:2685641)
chr4	143870865	143912130	4q28-q31	4q31.21	138590	GYPE, GPE	Glycophorin E	GYPE	2996	ENSG00000197465	tandem: 5'-GYPA-GYPB-GYPE-3'; ?4q31.1		
chr4	143995171	144021860	4q28-q31	4q31.21	617923	GYPB, SS	Glycophorin B	GYPB	2994	ENSG00000250361		[Blood group, Ss], 111740 (3); {Malaria, resistance to}, 611162 (3)	
chr4	144109302	144140853	4q28.2-q31.1	4q31.21	617922	GYPA, MN, GPA	Glycophorin A	GYPA	2993	ENSG00000170180		[Blood group, MNSs system], 111300 (3); {Malaria, resistance to}, 611162 (3)	
chr4	144645995	144740704	4q28-q32	4q31.21	606178	HHIP, HIP	Hedgehog-interacting protein	HHIP	64399	ENSG00000164161			Hhip (MGI:1341847)
chr4	144967116	145098540	4q31.21	4q31.21	613745	ANAPC10, DOC1, APC10	Anaphase-promoting complex, subunit 10	ANAPC10	10393	ENSG00000164162			Anapc10 (MGI:1916249)
chr4	145098003	145129523	4q31	4q31.21	601213	ABCE1, RNASELI, RNS4I	ATP-binding cassette, subfamily E, member 1 (ribonuclease L inhibitor)	ABCE1	6059	ENSG00000164163			Abce1 (MGI:1195458)
chr4	145133649	145180018	4q31.2	4q31.21	611744	OTUD4, KIAA1046, HIN1	OTD domain-containing protein 4	OTUD4	54726	ENSG00000164164			Otud4 (MGI:1098801)
chr4	145481305	145559175	4q28	4q31.21	601595	SMAD1, MADH1, MADR1, BSP1	Mothers against decapentaplegic, Drosophila, homolog of, 1	SMAD1	4086	ENSG00000170365			Smad1 (MGI:109452)
chr4	145619387	145660034	4q31.1-q31.2	4q31.21	607481	MMAA	MMAA gene	MMAA	166785	ENSG00000151611		Methylmalonic aciduria, vitamin B12-responsive, 251100 (3), Autosomal recessive	Mmaa (MGI:1923805)
chr4	146175682	146204435	4q31.2	4q31.22	607286	LSM6	LSM6 protein	LSM6	11157	ENSG00000164167			Lsm6 (MGI:1925901)
chr4	146638892	146642470	4q31.2	4q31.22	113725	BRN3B	Brn3b POU domain transcription factor	POU4F2	5458	ENSG00000151615			Pou4f2 (MGI:102524)
chr4	147480916	147544953	4q31.2	4q31.22-q31.23	131243	EDNRA, MFDA	Endothelin receptor type A	EDNRA	1909	ENSG00000151617		Mandibulofacial dysostosis with alopecia, 616367 (3), Autosomal dominant; {Migraine, resistance to}, 157300 (3), Autosomal dominant	Ednra (MGI:105923)
chr4	147617370	147637272	4q31.21	4q31.23	613937	TMEM184C, TMEM34	Transmembrane protein 184C	TMEM184C	55751	ENSG00000164168			Tmem184c (MGI:2384562)
chr4	147635649	147684229	4q31.23	4q31.23	616125	PRMT9, PRMT10	Protein arginine methyltransferase 9	PRMT9	90826	ENSG00000164169			Prmt9 (MGI:2142651)
chr4	147732062	148072780	4q31.2	4q31.23	609746	ARHGAP10, GRAF2, PSGAP	RHO GTPase-activating protein 10	ARHGAP10	79658	ENSG00000071205			Arhgap10 (MGI:1925764)
chr4	148078763	148444697	4q31.1	4q31.23	600983	NR3C2, MLR, MCR	Nuclear receptor subfamily 3, group C, member 2 (mineralocorticoid receptor; aldosterone receptor)	NR3C2	4306	ENSG00000151623		Hypertension, early-onset, autosomal dominant, with exacerbation in pregnancy, 605115 (3); Pseudohypoaldosteronism type I, autosomal dominant, 177735 (3), Autosomal dominant	Nr3c2 (MGI:99459)
chr4	150078273	150257456	4q31.23	4q31.2-q31.3	613166	DCLK2, DCK2, CLIK2, CL2	Doublecortin-like kinase 2	DCLK2	166614	ENSG00000170390			Dclk2 (MGI:1918012)
chr4	150200000	169200000	4q31.3-q32.3		611644	HSCR9	Hirschsprung disease, susceptibility to, 9		100188850		between D4S3049 and D4S1566	{Hirschsprung disease, susceptibility to, 9}, 611644 (2)	
chr4	150264514	151015726	4q31.3	4q31.3	606453	LRBA, LBA, CDC4L, CVID8	Lipopolysaccharide-responsive, beige-like anchor protein	LRBA	987	ENSG00000198589		Immunodeficiency, common variable, 8, with autoimmunity, 614700 (3), Autosomal recessive	Lrba (MGI:1933162)
chr4	150581924	150584692	4q31.3	4q31.3	604357	MAB21L2, MCSKS14	MAB21, C. elegans, homolog-like 2	MAB21L2	10586	ENSG00000181541		Microphthalmia/coloboma and skeletal dysplasia syndrome, 615877 (3), Autosomal recessive, Autosomal dominant	Mab21l2 (MGI:1346022)
chr4	151099572	151104651	4q31.2-q31.3	4q31.3	180478	RPS3A	Ribosomal protein S3a	RPS3A	6189	ENSG00000145425			
chr4	151103826	151103890	4q31.3	4q31.3	603568	SNORD73A, RNU73	Small nucleolar RNA, C/D box 73A	SNORD73A	8944				
chr4	151120280	151325664	4q31.3	4q31.3	608674	SH3D19, EBP	SH3 domain protein 19	SH3D19	152503	ENSG00000109686	fused with AML1 in t(4;21)		Sh3d19 (MGI:1350923)
chr4	151670655	151761022	4q31.328	4q31.3	603645	GATB, PET112	Glutamyl-tRNA amidotransferase, subunit B	GATB	5188	ENSG00000059691			Gatb (MGI:2442496)
chr4	152321257	152536872	4q31.3	4q31.3	606278	FBXW7, AGO, CDC4	F-box and WD40 domain protein 7	FBXW7	55294	ENSG00000109670			Fbxw7 (MGI:1354695)
chr4	153152280	153339321	4q31.3	4q31.3	614141	TRIM2, KIAA0517, CMT2R	Tripartite motif-containing protein 2	TRIM2	23321	ENSG00000109654		Charcot-Marie-Tooth disease, type 2R, 615490 (3), Autosomal recessive	Trim2 (MGI:1933163)
chr4	153344648	153415096	4q31.3	4q31.3	611422	MND1	Meiotic nuclear division 1, S. cerevisiae, homolog of	MND1	84057	ENSG00000121211			Mnd1 (MGI:1924165)
chr4	153466345	153637607	4q31.3	4q31.3	616243	KIAA0922, TMEM131L	KIAA0922 gene	TMEM131L	23240	ENSG00000121210			Tmem131l (MGI:2443399)
chr4	153684079	153710642	4q32	4q31.3	603028	TLR2, TIL4	Toll-like receptor-2	TLR2	7097	ENSG00000137462		{Colorectal cancer, susceptibility to}, 114500 (3), Autosomal dominant; {Leprosy, susceptibility to}, 246300 (3), Autosomal dominant; {Mycobacterium tuberculosis, susceptibility to}, 607948 (3)	Tlr2 (MGI:1346060)
chr4	153780589	153789075	4q31.3	4q31.3	604157	SFRP2, SARP1	Secreted frizzled-related protein 2	SFRP2	6423	ENSG00000145423			Sfrp2 (MGI:108078)
chr4	154234374	154491724	4q31.3	4q31.3	612486	DCHS2, CDHJ, PCDHJ	Dachsous, Drosophila, homolog of, 2	DCHS2	54798	ENSG00000197410			
chr4	154534996	154550432	4q31.2-q32.1	4q31.3	605961	PLRG1, PRL1	Pleiotropic regulator 1	PLRG1	5356	ENSG00000171566			Plrg1 (MGI:1858197)
chr4	154562979	154572762	4q28	4q31.3	134830	FGB	Fibrinogen, beta polypeptide	FGB	2244	ENSG00000171564	4q31 by A; proximal to GYPB/GYPA	Afibrinogenemia, congenital, 202400 (3), Autosomal recessive; Dysfibrinogenemia, congenital, 616004 (3); Hypofibrinogenemia, congenital, 202400 (3), Autosomal recessive	Fgb (MGI:99501)
chr4	154583125	154590765	4q28	4q31.3	134820	FGA	Fibrinogen, alpha polypeptide	FGA	2243	ENSG00000171560		Afibrinogenemia, congenital, 202400 (3), Autosomal recessive; Amyloidosis, familial visceral, 105200 (3), Autosomal dominant; Dysfibrinogenemia, congenital, 616004 (3); Hypodysfibrinogenemia, congenital, 616004 (3)	Fga (MGI:1316726)
chr4	154600000	182300000	4q32-q34		612165	RP29	Retinitis pigmentosa 29	RP29	54110		maximum lod at D4S415	Retinitis pigmentosa 29, 612165 (2), Autosomal recessive	
chr4	154600000	163600000	4q32.1-q32.2		613603	TRIP4q32.1q32.2, C4TRIPq32.1q32.2	Chromosome 4q32.1-q32.2 triplication syndrome					Chromosome 4q32.1-q32.2 triplication syndrome, 613603 (4), Autosomal dominant	
chr4	154604133	154612807	4q28	4q32.1	134850	FGG	Fibrinogen, gamma polypeptide	FGG	2266	ENSG00000171557	linked to MN	Afibrinogenemia, congenital, 202400 (3), Autosomal recessive; Dysfibrinogenemia, congenital, 616004 (3); Hypodysfibrinogenemia, 616004 (3); Hypofibrinogenemia, congenital, 202400 (3), Autosomal recessive	Fgg (MGI:95526)
chr4	154740840	154753118	4q31	4q32.1	604863	LRAT, LCA14	Lecithin retinol acyltransferase	LRAT	9227	ENSG00000121207		Leber congenital amaurosis 14, 613341 (3), Autosomal recessive; Retinal dystrophy, early-onset severe, 613341 (3), Autosomal recessive; Retinitis pigmentosa, juvenile, 613341 (3), Autosomal recessive	Lrat (MGI:1891259)
chr4	155173513	155217077	4q31	4q32.1	162642	NPY2R	Neuropeptide Y receptor Y2	NPY2R	4887	ENSG00000185149			Npy2r (MGI:108418)
chr4	155342657	155376969	4q32	4q32.1	610070	ASAP	Aster-associated protein	MAP9	79884	ENSG00000164114			Map9 (MGI:2442208)
chr4	155666709	155737061	4q32	4q32.1	139396	GUCY1A3, GUC1A3, GUCSA3, MYMY6	Guanylate cyclase 1, soluble, alpha 3	GUCY1A1	2982	ENSG00000164116		Moyamoya 6 with achalasia, 615750 (3), Autosomal recessive	Gucy1a1 (MGI:1926562)
chr4	155758972	155807641	4q32	4q32.1	139397	GUCY1B3, GUC1B3, GUCSB3	Guanylate cyclase 1, soluble, beta 3	GUCY1B1	2983	ENSG00000061918			Gucy1b1 (MGI:1860604)
chr4	155829698	155867302	4q31.3-q32	4q32.1	616693	ASIC5, HINAC	Acid-sensing ion channel family member 5	ASIC5	51802	ENSG00000256394			Asic5 (MGI:1929259)
chr4	155903692	155920405	4q31-q32	4q32.1	191070	TDO2, TPH2, TRPO, HYPTRP	Tryptophan oxygenase	TDO2	6999	ENSG00000151790	mutation identified in 1 HYPTRP patient	[?Hypertryptophanemia], 600627 (3), Autosomal recessive	Tdo2 (MGI:1928486)
chr4	155924117	155953895	4q32.1	4q32.1	600550	CTSO	Cathepsin O	CTSO	1519	ENSG00000256043			Ctso (MGI:2139628)
chr4	156761610	156971393	4q32	4q32.1	608452	PDGFC	Platelet-derived growth factor C	PDGFC	56034	ENSG00000145431			Pdgfc (MGI:1859631)
chr4	157076124	157172089	4q31.3	4q32.1	138492	GLRB, HKPX2	Glycine receptor, beta subunit	GLRB	2743	ENSG00000109738		Hyperekplexia 2, autosomal recessive, 614619 (3)	Glrb (MGI:95751)
chr4	157220583	157370582	4q32-q33	4q32.1	138247	GRIA2, GLUR2	Glutamate receptor, ionotropic, AMPA 2	GRIA2	2891	ENSG00000120251			Gria2 (MGI:95809)
chr4	158521710	158653371	4q32	4q32.1	606654	RXFP1, LGR7	Relaxin/insulin-like family peptide receptor 1	RXFP1	59350	ENSG00000171509			Rxfp1 (MGI:2682211)
chr4	158666674	158672254	4q32.1	4q32.1	616210	C4orf46, RCDG1	Chromosome 4 open reading frame 46	C4orf46	201725	ENSG00000205208			4930579G24Rik (MGI:1923189)
chr4	158672100	158708712	4q32-qter	4q32.1	231675	ETFDH, MADD	Electron transfer flavoprotein:ubiquinone oxidoreductase	ETFDH	2110	ENSG00000171503		Glutaric acidemia IIC, 231680 (3), Autosomal recessive	Etfdh (MGI:106100)
chr4	158709126	158723399	4q31.3	4q32.1	601753	PPID	Peptidylprolyl isomerase D (cyclophilin D)	PPID	5481	ENSG00000171497			Ppid (MGI:1914988)
chr4	158768994	158908049	4q32.1	4q32.1	612768	FNIP2, FNIPL, KIAA1450	Folliculin-interacting protein 2	FNIP2	57600	ENSG00000052795			Fnip2 (MGI:2683054)
chr4	163109132	163166920	4q32.2	4q32.2	617868	NAF1	Nuclear assembly factor 1 ribonucleoprotein	NAF1	92345	ENSG00000145414			Naf1 (MGI:2682306)
chr4	163323964	163344831	4q31.3-q32	4q32.2	162641	NPY1R	Neuropeptide Y receptor	NPY1R	4886	ENSG00000164128			Npy1r (MGI:104963)
chr4	163336967	163352276	4q31-q32	4q32.2	602001	NPY5R	Neuropeptide Y receptor Y5	NPY5R	4889	ENSG00000164129			Npy5r (MGI:108082)
chr4	163524297	164384049	4q32.2-q32.3	4q32.2-q32.3	613331	MARCH1	Membrane-associated RING-CH finger protein 1	MARCH1	55016	ENSG00000145416			March1 (MGI:1920175)
chr4	163600000	169200000	4q32.3		611109	CINN	Cinnamon odor, pleasantness of		100188835		max lod at AFM295YES	[Cinnamon odor, pleasantness of], 611109 (2)	
chr4	163600000	169200000	4q32.3		610239	HDLCQ4	High density lipoprotein cholesterol level QTL 4		100188806		between D4S1597 and D4S1539	[High density lipoprotein cholesterol level QTL 4], 610239 (2)	
chr4	164197006	164197710	4q32.3	4q32.3	606877	ANP32C, PP32R1	Acidic leucine-rich nuclear phosphoprotein 32 family, member C	ANP32C	23520				
chr4	164876987	164899062	4q32.3	4q32.3	615594	ELA, LOC100506013	Elabela	APELA	100506013	ENSG00000248329			
chr4	165207617	165323155	4q21.2	4q32.3	605774	KLHL2, MAYVEN	Kelch-like 2	KLHL2	11275	ENSG00000109466			Klhl2 (MGI:1924363)
chr4	165327665	165343163	4q32-q34	4q32.3	607545	MSMO1, SC4MOL, ERG25, MCCPD	Methylsterol monooxygenase 1	MSMO1	6307	ENSG00000052802		Microcephaly, congenital cataract, and psoriasiform dermatitis, 616834 (3), Autosomal recessive	Msmo1 (MGI:1913484)
chr4	165378941	165498546	4q32.3	4q32.3	114855	CPE	Carboxypeptidase E	CPE	1363	ENSG00000109472			Cpe (MGI:101932)
chr4	165873123	166105177	4q32-q33	4q32.3	606742	TLL1, TLL, ASD6	Tolloid-like 1	TLL1	7092	ENSG00000038295		Atrial septal defect 6, 613087 (3), Autosomal dominant	Tll1 (MGI:106923)
chr4	166733383	167234868	4q32.3	4q32.3	607989	SPOCK3	SPARC/osteonectin, CWCV, and KAZAL-like domains proteoglycan 3	SPOCK3	50859	ENSG00000196104			Spock3 (MGI:1920152)
chr4	168092524	168187741	4q33	4q32.3	608008	ANXA10	Annexin A10	ANXA10	11199	ENSG00000109511			Anxa10 (MGI:1347090)
chr4	168216290	168325980	4q32.3	4q32.3	613974	DDX60	DEAD box polypeptide 60	DDX60	55601	ENSG00000137628			Ddx60 (MGI:2384570)
chr4	168356734	168480513	4q32.3	4q32.3	616725	DDX60L	DEAD box polypeptide 60-like	DDX60L	91351	ENSG00000181381			
chr4	168497038	168928456	4q32.3	4q32.3	608092	PALLD, KIAA0992, PNCA1	Palladin, mouse, homolog of	PALLD	23022	ENSG00000129116		{Pancreatic cancer, susceptibility to, 1}, 606856 (3)	Palld (MGI:1919583)
chr4	169200000	190214555	4q33-qter		607258	HCA1	Hypercalciuria, absorptive, 1		266790			Hypercalciuria, absorptive, 607258 (2)	
chr4	169393269	169612628	4q33	4q33	604588	NEK1, SRTD6, SRPS2A, ALS24	Never in mitosis gene A-related kinase 1	NEK1	4750	ENSG00000137601	1 patient showed heterozygous NEK2 and DYNC2H1 mutations	{Amyotrophic lateral sclerosis, susceptibility to, 24}, 617892 (3); Short-rib thoracic dysplasia 6 with or without polydactyly, 263520 (3), Autosomal recessive, Digenic recessive	Nek1 (MGI:97303)
chr4	169620520	169723186	4q33	4q33	600580	CLCN3	Chloride channel-3	CLCN3	1182	ENSG00000109572			Clcn3 (MGI:103555)
chr4	169729467	169757941	4q33	4q33	616614	HPF1, C4orf27	Histone parylation factor 1	HPF1	54969	ENSG00000056050			Hpf1 (MGI:1919862)
chr4	169986596	170033027	4q32.3	4q33	616523	MFAP3L, KIAA0626	Microfibrillar-associated protein 3-like	MFAP3L	9848	ENSG00000198948			Mfap3l (MGI:1918556)
chr4	170060221	170091698	4q32.2	4q33	611754	AADAT, KAT2	Alpha-aminoadipate aminotransferase	AADAT	51166	ENSG00000109576			Aadat (MGI:1345167)
chr4	171812655	173040407	4q34.1	4q34.1	615138	GALNTL6, GALNACT20	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	GALNTL6	442117	ENSG00000174473			Galntl6 (MGI:1913581)
chr4	173168752	173323966	4q31.1	4q34.1	605005	GALNT7	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 7	GALNT7	51809	ENSG00000109586			Galnt7 (MGI:1349449)
chr4	173331375	173334443	4q31	4q34.1	163906	HMGB2, HMG2	High-mobility group box 2 (high-mobility group (nonhistone chromosomal) protein 2)	HMGB2	3148	ENSG00000164104			Hmgb2 (MGI:96157)
chr4	173370941	173377531	4q34.1	4q34.1	603378	SAP30	SIN3-associated polypeptide, 30kD	SAP30	8819	ENSG00000164105			Sap30 (MGI:1929129)
chr4	173388147	173519237	4q34.1	4q34.1	603163	SCRG1	Scraptie-responsive gene 1	SCRG1	11341	ENSG00000164106			Scrg1 (MGI:1328308)
chr4	173526500	173530226	4q33	4q34.1	602407	HAND2, DHAND2, DHAND	Heart- and neural crest derivative-expressed 2	HAND2	9464	ENSG00000164107			Hand2 (MGI:103580)
chr4	173528599	173591254	4q34.1	4q34.1	617240	HAND2AS1, UPH, DEIN	HAND2 antisense RNA 1, noncoding (Upperhand)	HAND2-AS1	79804				
chr4	173615735	173616841	4q33-q34.1	4q34.1	116960	MORF4, SEN1, CSRB	Mortality factor 4 (senescence-related, cellular, 1)	MORF4	10934				
chr4	174236657	174284250	4q34.1	4q34.1	605649	FBXO8, FBX8, FBS	F-box only protein 8	FBXO8	26269	ENSG00000164117			Fbxo8 (MGI:1354696)
chr4	174423794	174423863	4q34.1	4q34.1	616274	MIR4276	Micro RNA 4276	MIR4276	100423042				
chr4	174490176	174522897	4q34-q35	4q34.1	601688	HPGD, PGDH1, PHOAR1	Hydroxyprostaglandin dehydrogenase 15-(NAD)	HPGD	3248	ENSG00000164120		Cranioosteoarthropathy, 259100 (3), Autosomal recessive; Digital clubbing, isolated congenital, 119900 (3), Autosomal recessive; Hypertrophic osteoarthropathy, primary, autosomal recessive 1, 259100 (3), Autosomal recessive	Hpgd (MGI:108085)
chr4	174642010	174829567	4q33-q34	4q34.1	600421	GLRA3	Glycine receptor, alpha-3 polypeptide	GLRA3	8001	ENSG00000145451			Glra3 (MGI:95749)
chr4	174918357	174978179	4q34	4q34.1	604778	ADAM29	A disintegrin and metalloproteinase domain 29	ADAM29	11086	ENSG00000168594			Adam29 (MGI:2676326)
chr4	175632936	176002690	4q34	4q34.2	601275	GPM6A, M6A	Glycoprotein M6A	GPM6A	2823	ENSG00000150625			Gpm6a (MGI:107671)
chr4	176065833	176182827	4q34	4q34.2	609005	WDR17	WD repeat-containing protein 17	WDR17	116966	ENSG00000150627			Wdr17 (MGI:1924662)
chr4	176184573	176195670	4q34.1-q34.2	4q34.2	609879	SPATA4, TSARG2	Spermatogenesis-associated protein 4	SPATA4	132851	ENSG00000150628			Spata4 (MGI:1916531)
chr4	176213672	176277570	4q34.2	4q34.2	615050	ASB5	Ankyrin repeat- and SOCS box-containing protein 5	ASB5	140458	ENSG00000164122			Asb5 (MGI:1923544)
chr4	176600000	190214555	4q34.3-q35.2		600361	HMSN5	Hereditary motor and sensory neuropathy V		101059903		D4S1552 and D4S2930	Hereditary motor and sensory neuropathy V, 600361 (2), Autosomal dominant	
chr4	176600000	186200000	4q34.3-q35.1		613371	SCA30	Spinocerebellar ataxia 30	SCA30	100359393		between rs1397413 and rs2175476; max lod 3.0	?Spinocerebellar ataxia 30, 613371 (2), Autosomal dominant	
chr4	176683533	176792744	4q34.3	4q34.3	601528	VEGFC, VRP, LMPH1D	Vascular endothelial growth factor C	VEGFC	7424	ENSG00000150630		Lymphedema, hereditary, ID, 615907 (3), Autosomal dominant	Vegfc (MGI:109124)
chr4	177430773	177442502	4q32-q33	4q34.3	613228	AGA	Aspartylglucosaminidase	AGA	175	ENSG00000038002		Aspartylglucosaminuria, 208400 (3), Autosomal recessive	Aga (MGI:104873)
chr4	181447612	182803023	4q35.1	4q34.3-q35.1	610083	TENM3, ODZ3, TNM3, KIAA1455, MCOPCB9	Teneurin transmembrane protein 3	TENM3	55714	ENSG00000218336		Microphthalmia, isolated, with coloboma 9, 615145 (3), Autosomal recessive	Tenm3 (MGI:1345183)
chr4	182300000	190214555	4q35-qter		606282	DFNA24	Deafness, autosomal dominant 24	DFNA24	23723			Deafness, autosomal dominant 24, 606282 (2), Autosomal dominant	
chr4	182300000	190214555	4q35		127600	DKBI	Dyskeratosis, hereditary benign intraepithelial		80870			Dyskeratosis, hereditary benign intraepithelial, 127600 (2), Autosomal dominant	
chr4	182300000	190214555	4q35		158900	FSHD1, FSHD1A	Facioscapulohumeral muscular dystrophy 1				due to D4Z4 macrosatellite repeat on 4q35	Facioscapulohumeral muscular dystrophy 1, 158900 (4), Autosomal dominant	
chr4	182890090	182917476	4q35	4q35.1	607638	DCTD	Deoxycytidylate deaminase	DCTD	1635	ENSG00000129187			Dctd (MGI:2444529)
chr4	183444590	183449063	4q35.1	4q35.1	615914	CDKN2AIP, CARF	Cyclin-dependent kinase inhibitor 2A-interacting protein	CDKN2AIP	55602	ENSG00000168564			Cdkn2aip (MGI:1918175)
chr4	183505049	183512427	4q35.1	4q35.1	604215	ING2, ING1L	Inhibitor of growth 2	ING2	3622	ENSG00000168556			Ing2 (MGI:1916510)
chr4	183659266	183713593	4q35.1	4q35.1	614138	TRAPPC11, C4orf41, LGMD2S	Trafficking protein particle complex, subunit 11	TRAPPC11	60684	ENSG00000168538		Muscular dystrophy, limb-girdle, type 2S, 615356 (3), Autosomal recessive	Trappc11 (MGI:2444585)
chr4	183796330	184023529	4q35	4q35.1	617359	STOX2, KIAA1392	Storkhead box 2	STOX2	56977	ENSG00000173320			Stox2 (MGI:1918319)
chr4	184088705	184217960	4q35.1	4q35.1	616983	ENPP6	Ectonucleotide pyrophosphatase/phosphodiesterase 6	ENPP6	133121	ENSG00000164303			Enpp6 (MGI:2445171)
chr4	184382740	184474579	4q35.1	4q35.1	147576	IRF2	Interferon regulatory factor-2	IRF2	3660	ENSG00000168310			Irf2 (MGI:96591)
chr4	184627695	184649474	4q35	4q35.1	600636	CASP3, CPP32	Caspase 3, apoptosis-related cysteine protease	CASP3	836	ENSG00000164305			Casp3 (MGI:107739)
chr4	184649612	184694958	4q35.1	4q35.1	615421	CCDC111, MYP22	Coiled-coil domain containing 111	PRIMPOL	201973	ENSG00000164306		Myopia 22, autosomal dominant, 615420 (3), Autosomal dominant	Primpol (MGI:3603756)
chr4	184694064	184734131	4q35.1	4q35.1	611511	MLF1IP, CENPU, CENP50	MLF1-interacting protein (centromere protein U)	CENPU	79682	ENSG00000151725			Cenpu (MGI:1919126)
chr4	184755594	184826592	4q34-q35	4q35.1	152425	ACSL1, FACL2, FACL1, LACS, ACS1	Acyl-CoA synthetase long-chain family member 1	ACSL1	2180	ENSG00000151726			Acsl1 (MGI:102797)
chr4	185018840	185021264	4q35.1	4q35.1	617546	HELT, HESL, MGN	HELT basic helix-loop-helix transcription factor	HELT	391723	ENSG00000187821			Helt (MGI:3040955)
chr4	185143262	185150383	4q35	4q35.1	103220	SLC25A4, ANT1, T1, PEO3, PEO2, MTDPS12A, PEOA2	Solute carrier family 25 (mitochondrial carrier) member 4 (adenine nucleotide translocator-1, skeletal muscle)	SLC25A4	291	ENSG00000151729		Mitochondrial DNA depletion syndrome 12A (cardiomyopathic type) AD, 617184 (3), Autosomal dominant; Mitochondrial DNA depletion syndrome 12B (cardiomyopathic type) AR, 615418 (3), Autosomal recessive; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 2, 609283 (3), Autosomal dominant	Slc25a4 (MGI:1353495)
chr4	185151722	185205442	4q35.1	4q35.1	616047	CFAP97, HMW, KIAA1430	Cilia- and flagella-associated protein 97	CFAP97	57587	ENSG00000164323			Cfap97 (MGI:1914006)
chr4	185399539	185425984	4q35.1	4q35.1	611482	UFSP2, C4orf20, BHD	UFM1-specific protease 2	UFSP2	55325	ENSG00000109775	mutation identified in 1 BHD family	?Hip dysplasia, Beukes type, 142669 (3), Autosomal dominant	Ufsp2 (MGI:1913679)
chr4	185445181	185471758	4q35.1	4q35.1	609488	KMHN1	Cancer/testis antigen KM-HN-1	CCDC110	256309	ENSG00000168491			Ccdc110 (MGI:2685018)
chr4	185500659	185535557	4q35	4q35.1	605889	ALP	Actinin-associated LIM protein	PDLIM3	27295	ENSG00000154553			
chr4	185585443	185956715	4q35.1	4q35.1	616349	SORBS2, ARGBP2, KIAA0777	Sorbin and SH3 domains-containing protein 2	SORBS2	8470	ENSG00000154556			Sorbs2 (MGI:1924574)
chr4	186069154	186085097	4q35	4q35.1	603029	TLR3, IIAE2	Toll-like receptor-3	TLR3	7098	ENSG00000164342		{Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 2}, 613002 (3), Autosomal recessive, Autosomal dominant; {HIV1 infection, resistance to}, 609423 (3)	Tlr3 (MGI:2156367)
chr4	186191519	186213462	4q35.1	4q35.1-q35.2	608614	CYP4V2, BCD	Cytochrome P450, family 4, subfamily V, polypeptide 2	CYP4V2	285440	ENSG00000145476		Bietti crystalline corneoretinal dystrophy, 210370 (3), Autosomal recessive	Cyp4v3 (MGI:2142763)
chr4	186215713	186258476	4q35	4q35.2	229000	KLKB1, KLK3, PKKD	Kallikrein B plasma 1 (Fletcher factor)	KLKB1	3818	ENSG00000164344	similar to F11	Fletcher factor (prekallikrein) deficiency, 612423 (3), Autosomal recessive	Klkb1 (MGI:102849)
chr4	186265963	186290726	4q35	4q35.2	264900	F11	Coagulation factor XI (plasma thromboplastin antecedent)	F11	2160	ENSG00000088926	not closely linked to MNS	Factor XI deficiency, autosomal dominant, 612416 (3); Factor XI deficiency, autosomal recessive, 612416 (3)	F11 (MGI:99481)
chr4	186532768	186555566	4q35.1	4q35.2	600665	MTNR1A	Melatonin receptor 1A	MTNR1A	4543	ENSG00000168412			Mtnr1a (MGI:102967)
chr4	186587782	186726695	4q34-q35	4q35.2	600976	FAT1, FAT	FAT tumor suppressor, Drosophila, homolog of, 1	FAT1	2195	ENSG00000083857			Fat1 (MGI:109168)
chr4	187994043	188005049	4q35.2	4q35.2	614572	ZFP42, REX1	Zinc finger protein 42	ZFP42	132625	ENSG00000179059			Zfp42 (MGI:99187)
chr4	189940818	189963203	4q35	4q35.2	601278	FRG1, FSG1	Facioscapulohumeral muscular dystrophy region gene-1	FRG1	2483	ENSG00000109536			Frg1 (MGI:893597)
chr4	190021168	190022664	4q35	4q35.2	615581	DUX4L9, DUX4C	Double homeobox 4-like 9	DUX4L9	100288711				
chr4	190024366	190027256	4q35	4q35.2	609032	FRG2	Facioscapulohumeral muscular dystrophy region gene 2	FRG2	448831	ENSG00000205097			Frg2f8,Frg2f7,Frg2f9,Frg2f2,Frg2f1,Frg2f4,Frg2f3,Frg2f10,Frg2f6,Frg2f11,Frg2f5,Frg2f12,Frg2f13 (MGI:3643940,MGI:3782846,MGI:3782845,MGI:3779576,MGI:3647970,MGI:3779574,MGI:3647962,MGI:3648470,MGI:3644083,MGI:3648177,MGI:3035485,MGI:3643939,MGI:3805017)
chr4	190064501	190067863	4q35	4q35.2	614865	DBET	D4A4 binding element transcript, noncoding	DBET	100419743				
chr4	190067934	190069218	4q35.2	4q35.2	611442	DUX2	Double homeobox protein 2	DUX4L8	26583		?10q26.3		
chr4	190173700	190185910	4q35	4q35.2	606009	DUX4	Double homeo box protein 4	DUX4	100288687	ENSG00000260596			
chr4	0	190214555	Chr.4		151450	LAG5	Leukocyte antigen group 5		7895			Neutropenia, neonatal alloimmune (1)	
chr4	0	190214555	Chr.4		187320	TS13	Temperature sensitivity complementation, ts13		7896				
chr5	0	48800000	5p		108800	ASD1	Atrial septal defect 1	ASD1	431		max lod at D5S406	Atrial septal defect 1, 108800 (2), Autosomal dominant	
chr5	0	4400000	5p15.33		613059	BCC3	Basal cell carcinoma, susceptibility to, 3		100307120			{Basal cell carcinoma, susceptibility to, 3}, 613059 (2)	
chr5	0	4400000	5p15.33		613033	GLM8	Glioma susceptibility 8		100316847		associated with rs2736100	{Glioma susceptibility 8}, 613033 (2)	
chr5	0	4400000	5p15.33		612571	LNCR3	Lung cancer susceptibility 3		100271687		associated with rs402710 and rs2736100	{Lung cancer susceptibility 3}, 612571 (2)	
chr5	0	42500000	5p15.33-p13.1		608850	MCDR3	Macular dystrophy, retinal, 3	MCDR3	317668		maximum lod at D5S630	Macular dystrophy, retinal, 3, 608850 (2), Autosomal dominant	
chr5	0	48800000	5p		601888	MHS6	Malignant hyperthermia susceptibility 6	MHS6	4266			{Malignant hyperthermia susceptibility 6}, 601888 (2)	
chr5	0	15000000	5p15.33-p15.2		612554	MYP16	Myopia 16	MYP16	100270641		max lod at D5S2505	Myopia 16, 612554 (2)	
chr5	0	18400000	5p15		613637	TST2	Tuberculin skin test reactivity quantitative trait locus		100526823		max lod at 16:2.70Mb	[Tuberculin skin test reactivity QTL], 613637 (2)	
chr5	218222	264815	5p15	5p15.33	600857	SDHA, SDH1, SDHF, CMD1GG, PGL5	Succinate dehydrogenase complex, subunit A, flavoprotein	SDHA	6389	ENSG00000073578	copy on 3q29	Cardiomyopathy, dilated, 1GG, 613642 (3); Leigh syndrome, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial respiratory chain complex II deficiency, 252011 (3), Autosomal recessive; Paragangliomas 5, 614165 (3), Autosomal dominant	Sdha (MGI:1914195)
chr5	271620	314973	5p15.33	5p15.33	601057	PDCD6, ALG2	Programmed cell death 6	PDCD6	10016	ENSG00000249915			Pdcd6 (MGI:109283)
chr5	304175	438290	5p15.3	5p15.33	606517	AHRR, KIAA1234	Arylhydrocarbon receptor repressor	AHRR	57491	ENSG00000063438			Ahrr (MGI:1333776)
chr5	443218	467295	5p15.33	5p15.33	608186	EXOC3, SEC6	Exocyst complex component 3	EXOC3	11336	ENSG00000180104			Exoc3 (MGI:2443972)
chr5	471985	524433	5p15.3	5p15.33	182307	SLC9A3, NHE3, DIAR8	Solute carrier family 9 (sodium/hydrogen exchanger), member 3	SLC9A3	6550	ENSG00000066230	pseudogene on chr.10	Diarrhea 8, secretory sodium, congenital, 616868 (3), Autosomal recessive	Slc9a3 (MGI:105064)
chr5	612289	663499	5p15.33	5p15.33	616475	CEP72, KIAA1519	Centrosomal protein, 72kD	CEP72	55722	ENSG00000112877			Cep72 (MGI:1921720)
chr5	659861	700726	5p15.3	5p15.33	608773	TPPP, P25, P24	Tubulin polymerization-promoting protein	TPPP	11076	ENSG00000171368			Tppp (MGI:1920198)
chr5	892853	919347	5p15.33	5p15.33	604507	TRIP13, 16E1BP, MVA3	Thyroid hormone receptor interactor 13	TRIP13	9319	ENSG00000071539		Mosaic variegated aneuploidy syndrome 3, 617598 (3), Autosomal recessive	Trip13 (MGI:1916966)
chr5	1008844	1038811	5p15.3	5p15.33	607852	NKD2	Naked cuticle, Drosophila, homolog of, 2	NKD2	85409	ENSG00000145506			Nkd2 (MGI:1919543)
chr5	1050373	1155886	5p15.3	5p15.33	604879	SLC12A7, KCC4	Solute carrier family 12 (potassium/chloride transporters), member 7	SLC12A7	10723	ENSG00000113504			Slc12a7 (MGI:1342283)
chr5	1201594	1225116	5p15.33	5p15.33	608893	SLC6A19, HND	Solute carrier family 6 (neurotransmitter transporter), member 19	SLC6A19	340024	ENSG00000174358		Hartnup disorder, 234500 (3), Autosomal recessive; Hyperglycinuria, 138500 (3), Autosomal dominant; Iminoglycinuria, digenic, 242600 (3), Autosomal recessive, Digenic recessive	Slc6a19 (MGI:1921588)
chr5	1225354	1246188	5p15.33	5p15.33	610300	SLC6A18, XTRP2	Solute carrier family 6 (neurotransmitter transporter), member 18	SLC6A18	348932	ENSG00000164363			Slc6a18 (MGI:1336892)
chr5	1253166	1295046	5p15.33	5p15.33	187270	TERT, TCS1, EST2, DKCA2, DKCB4, PFBMFT1, CMM9	Telomerase reverse transcriptase	TERT	7015	ENSG00000164362	deleted in cri du chat	{Dyskeratosis congenita, autosomal dominant 2}, 613989 (3), Autosomal recessive, Autosomal dominant; {Dyskeratosis congenita, autosomal recessive 4}, 613989 (3), Autosomal recessive, Autosomal dominant; {Leukemia, acute myeloid}, 601626 (3), Autosomal dominant; {Melanoma, cutaneous malignant, 9}, 615134 (3); {Pulmonary fibrosis and/or bone marrow failure, telomere-related, 1}, 614742 (3), Autosomal dominant	Tert (MGI:1202709)
chr5	1317743	1345069	5p15.33	5p15.33	612585	CLPTM1L, CRR9	CLPTM1-like protein	CLPTM1L	81037	ENSG00000049656			Clptm1l (MGI:2442892)
chr5	1392789	1445427	5p15.3	5p15.33	126455	SLC6A3, DAT1, PKDYS	Solute carrier family 6 (neurotransmitter transporter, dopamine), member 3	SLC6A3	6531	ENSG00000142319		{Nicotine dependence, protection against}, 188890 (3); Parkinsonism-dystonia, infantile, 613135 (3), Autosomal recessive	Slc6a3 (MGI:94862)
chr5	1461422	1523976	5p15.33	5p15.33	610472	AYTL2, LPCAT, LPCAT1	Acyltransferase-like 2	LPCAT1	79888	ENSG00000153395			Lpcat1 (MGI:2384812)
chr5	1798384	1801431	5p15.3	5p15.33	611842	MRPL36	Mitochondrial ribosomal protein L36	MRPL36	64979	ENSG00000171421			Mrpl36 (MGI:2137228)
chr5	1801381	1816050	5pter-p15.33	5p15.33	603848	NDUFS6	NADH dehydrogenase (ubiquinone) Fe-S protein 6, 13kD	NDUFS6	4726	ENSG00000145494		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Gm6415,Ndufs6 (MGI:107932,MGI:3648526)
chr5	1877426	1887178	5p15.3	5p15.33	606199	IRX4	Iroquois homeobox protein 4	IRX4	50805	ENSG00000113430			Irx4 (MGI:1355275)
chr5	2707929	2751654	5p15.3	5p15.33	606198	IRX2	Iroquois homeo box protein 2	IRX2	153572	ENSG00000170561			Irx2 (MGI:1197526)
chr5	2712590	2715236	5p15.33	5p15.33	615764	LSINCT5	Long stress-induced noncoding transcript 5	LSINCT5	101234261				
chr5	2751939	2758575	5p15.33	5p15.33	610522	CEI	Coordinated expression to IRXA2	C5orf38	153571	ENSG00000186493			
chr5	3595854	3601402	5p15.3	5p15.33	606197	IRX1	Iroquois homeo box protein 1	IRX1	79192	ENSG00000170549			Irx1 (MGI:1197515)
chr5	5140329	5320303	5p15	5p15.32	607510	ADAMTS16	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 16	ADAMTS16	170690	ENSG00000145536			Adamts16 (MGI:2429637)
chr5	6300000	18400000	5p15.31-p15.1		613608	FAME3, FCMTE3	Epilepsy, myoclonic, familial adult, 3		100529229		between D5S580 and D5S2096	Epilepsy, myoclonic, familial adult, 3, 613608 (2), Autosomal dominant	
chr5	6371925	6378525	5p15.31	5p15.31	612382	MED10, NUT2	Mediator complex subunit 10	MED10	84246	ENSG00000133398			Med10 (MGI:106331)
chr5	6437346	6496720	5p15.3	5p15.31	615832	UBE2QL1	Ubiquitin-conjugating enzyme E2Q family-like protein 1	UBE2QL1	134111	ENSG00000215218			Ube2ql1 (MGI:1924230)
chr5	6582135	6588499	5p15.31	5p15.31	616385	LINC01018, SRHC	Long intergenic noncoding RNA 1018	LINC01018	255167				
chr5	6599238	6633359	5p15.31	5p15.31	610916	NSUN2, TRM4, SAKI, MISU, MRT5	NOP2/SUN RNA methyltransferase family, member 2	NSUN2	54888	ENSG00000037474		Mental retardation, autosomal recessive 5, 611091 (3), Autosomal recessive	Nsun2 (MGI:107252)
chr5	6633321	6669561	5p15	5p15.31	184753	SRD5A1	Steroid-5-alpha-reductase, alpha polypeptide 1 (3-oxo-5 alpha-steroid delta 4-dehydrogenase alpha 1)	SRD5A1	6715	ENSG00000145545	pseudogene on X		Srd5a1 (MGI:98400)
chr5	6713937	6757047	5p15	5p15.31	605198	POLS, TRF4, POLK	Polymerase, DNA, sigma	PAPD7	11044	ENSG00000112941			Papd7 (MGI:2682295)
chr5	7396229	7830080	5p15.3	5p15.31	103071	ADCY2	Adenylyl cyclase-2, brain	ADCY2	108	ENSG00000078295			Adcy2 (MGI:99676)
chr5	7851185	7901123	5p15.3-p15.2	5p15.31	602568	MTRR	Methionine synthase reductase	MTRR	4552	ENSG00000124275		Homocystinuria-megaloblastic anemia, cbl E type, 236270 (3), Autosomal recessive; {Neural tube defects, folate-sensitive, susceptibility to}, 601634 (3), Autosomal recessive	Mtrr (MGI:1891037)
chr5	7859158	7869036	5p15.31	5p15.31	617530	FASTKD3	Fast kinase domains 3	FASTKD3	79072	ENSG00000124279			Fastkd3 (MGI:1916827)
chr5	9035025	9546120	5p15.2	5p15.31	609297	SEMA5A, SEMF	Semaphorin 5a	SEMA5A	9037	ENSG00000112902			Sema5a (MGI:107556)
chr5	9628996	9630350	5p15	5p15.31	604796	TRB7, T2R1	Taste receptor, family B, member 7	TAS2R1	50834	ENSG00000169777			Tas2r119 (MGI:2681253)
chr5	9900000	28900000	5p15.2-p14		606770	ADIPQTL2, CAQ5	Adiponectin, serum level of, QTL 2		171511		near D5S817	{Adiponectin, serum level of, QTL2}, 606770 (2)	
chr5	9900000	23300000	5p15.2-p14.3		610213	ANIB4	Aneurysm, intracranial berry, 4	ANIB4	724058		max lod at D5S1954	Aneurysm, intracranial berry, 4, 610213 (2)	
chr5	10249920	10266411	5p15.2	5p15.2	610150	CCT5, KIAA0098, CCTE	chaperonin containing TCP1, subunit 5 (epsilon)	CCT5	22948	ENSG00000150753		Neuropathy, hereditary sensory, with spastic paraplegia, 256840 (3), Autosomal recessive	Cct5 (MGI:107185)
chr5	10277594	10308055	5p15.2	5p15.2	613379	CMBL	Carboxymethylenebutenolidase-like protein	CMBL	134147	ENSG00000164237			Cmbl (MGI:1916824)
chr5	10353638	10440387	5p15.2	5p15.2	613297	MARCH6, TEB4, DOA10, KIAA0597	Membrane-associated RING-CH finger protein 6	MARCH6	10299	ENSG00000145495			March6 (MGI:2442773)
chr5	10441861	10482806	5p15.2	5p15.2	611756	ROPN1L, ASP	ROPN1-like protein	ROPN1L	83853	ENSG00000145491			Ropn1l (MGI:2182357)
chr5	10679229	10761274	5p15.2	5p15.2	600954	DAP	Death-associated protein	DAP	1611	ENSG00000112977			Dap (MGI:1918190)
chr5	10971839	11904066	5p15.2	5p15.2	604275	CTNND2, NPRAP	Catenin, delta-2	CTNND2	1501	ENSG00000169862			Ctnnd2 (MGI:1195966)
chr5	12574856	12805182	5p15.2	5p15.2	617097	LINC01194, TAG	Long intergenic noncoding RNA 1194	LINC01194	404663				
chr5	13690327	14011828	5p15-p14	5p15.2	603335	DNAH5, HL1, PCD, CILD3	Dynein, axonemal, heavy chain 5	DNAH5	1767	ENSG00000039139		Ciliary dyskinesia, primary, 3, with or without situs inversus, 608644 (3)	Dnah5 (MGI:107718)
chr5	14143349	14510203	5p15.1-p14	5p15.2	601893	TRIO, MRD44	Triple functional domain	TRIO	7204	ENSG00000038382		Mental retardation, autosomal dominant 44, 617061 (3), Autosomal dominant	Trio (MGI:1927230)
chr5	14660793	14716551	5p15.2	5p15.2	615712	OTULIN, FAM105B, GUM, AIPDS	OTU deubiquitinase with linear linkage specificity	OTULIN	90268	ENSG00000154124		Autoinflammation, panniculitis, and dermatosis syndrome, 617099 (3), Autosomal recessive	Otulin (MGI:3577015)
chr5	14704799	14871784	5p15.2-p14.1	5p15.2	605145	ANKH, HANK, ANK, CMDJ, CCAL2, CPPDD	Ank, mouse, homolog of	ANKH	56172	ENSG00000154122		Chondrocalcinosis 2, 118600 (3), Autosomal dominant; Craniometaphyseal dysplasia, 123000 (3), Autosomal dominant	Ank (MGI:3045421)
chr5	15000000	33800000	5p15.1-p13.3		613969	MYP19	Myopia 19, autosomal dominant		100653370		highest lod at D5S419	Myopia 19, 613969 (2), Autosomal dominant	
chr5	15000000	18400000	5p15.1		608098	PVNH3	Periventricular nodular heterotopia 3		100302681			Periventricular nodular heterotopia 3, 608098 (2)	
chr5	15500195	15939795	5p15.1	5p15.1	605656	FBXL7, FBL7	F-box and leucine-rich repeat protein 7	FBXL7	23194	ENSG00000183580			Fbxl7 (MGI:3052506)
chr5	16067305	16179787	5p15.1	5p15.1	613338	MARCH11	Membrane-associated RING-CH finger protein 11	MARCH11	441061	ENSG00000183654			March11 (MGI:3608327)
chr5	16451518	16465784	5p15.1	5p15.1	608694	ZNF622, ZPR9	Zinc finger protein 622	ZNF622	90441	ENSG00000173545			Zfp622 (MGI:1289282)
chr5	16473037	16617095	5p15.1	5p15.1	613114	FAM134B, HSAN2B	Family with sequence similarity 134, member B	RETREG1	54463	ENSG00000154153		Neuropathy, hereditary sensory and autonomic, type IIB, 613115 (3), Autosomal recessive	Retreg1 (MGI:1913520)
chr5	16661906	16936275	5p15.1-p14.3	5p15.1	601481	MYO10	Myosin X	MYO10	4651	ENSG00000145555			Myo10 (MGI:107716)
chr5	17216822	17276844	5p15.1-p14	5p15.1	605940	BASP1, CAP23, NAP22	Brain-abundant signal protein, membrane-attached, 1	BASP1	10409	ENSG00000176788			Basp1 (MGI:1917600)
chr5	18400000	28900000	5p14		157960	MLVI2	Moloney leukemia virus integration site-2		4309				
chr5	19471295	20575885	5p15.2-p15.1	5p14.3	603019	CDH18, CDH14	Cadherin 18	CDH18	1016	ENSG00000145526			Cdh18 (MGI:1344366)
chr5	21750865	22853621	5p14-p13	5p14.3	600562	CDH12, CDHB	Cadherin-12 (N-cadherin 2)	CDH12	1010	ENSG00000154162	pseudogene on 5q13 in SMA region		Cdh12 (MGI:109503)
chr5	22142351	22152271	5p14	5p14.3	176793	PMCHL1	Pro-melanin-concentrating hormone-like 1	PMCHL1	5369				
chr5	23507608	23528596	5p14.2	5p14.2	609760	PRDM9	PR domain-containing protein 9	PRDM9	56979	ENSG00000164256			Prdm9 (MGI:2384854)
chr5	24487099	24644977	5p14-p13	5p14.2-p14.1	604555	CDH10	Cadherin 10	CDH10	1008	ENSG00000040731			Cdh10 (MGI:107436)
chr5	26880599	27038581	5p14	5p14.1	609974	CDH9	Cadherin 9	CDH9	1007	ENSG00000113100			Cdh9 (MGI:107433)
chr5	28900000	42500000	5p13		608906	ADHD4	Attention deficit-hyperactivity disorder, susceptibility to, 4		450090			{Attention deficit-hyperactivity disorder}, 143465 (2), Autosomal dominant	
chr5	28900000	38400000	5p13.3-p13.2		607004	BDA1B	Brachydactyly, type A1, locus B		246260			Brachydactyly, type A1, B, 607004 (2), Autosomal dominant	
chr5	28900000	42500000	5p13		613174	DUP5p13, C5DUPp13	Chromosome 5p13 duplication syndrome					Chromosome 5p13 duplication syndrome, 613174 (4), Isolated cases	
chr5	28900000	67400000	5p13-q12		610262	HYT6	Hypertension, essential, susceptibility to, 6		100188808			{Hypertension, essential, susceptibility to, 6}, 145500 (2), Multifactorial	
chr5	28900000	42500000	5p13		610170	KYPSC1	Kyphoscoliosis 1		780921			Kyphoscoliosis 1, 610170 (2)	
chr5	31193654	31329145	5p15.1-p14	5p13.3	603007	CDH6	Cadherin 6	CDH6	1004	ENSG00000113361			Cdh6 (MGI:107435)
chr5	31400493	31532174	5p14-p13	5p13.3	608828	RNASEN, DROSHA, RANSE3L, RN3	Ribonuclease III, nuclear	DROSHA	29102	ENSG00000113360			Drosha (MGI:1261425)
chr5	31639387	32110931	5p13.2	5p13.3	610697	PDZD2, PAPIN, PIN1, AIPC	PDZ domain containing 2	PDZD2	23037	ENSG00000133401			Pdzd2 (MGI:1922394)
chr5	32124710	32174318	5p13.3	5p13.3	612207	GOLPH3, GPP34, MIDAS	Golgi phosphoprotein 3	GOLPH3	64083	ENSG00000113384			Golph3 (MGI:1913879)
chr5	32227006	32313007	5p13.3	5p13.3	606501	MTMR12, 3PAP, KIAA1682	Myotubularin-related protein 12	MTMR12	54545	ENSG00000150712			Mtmr12 (MGI:2443034)
chr5	32354345	32444760	5p13.3	5p13.3	615635	ZFR	Zinc finger RNA-binding protein	ZFR	51663	ENSG00000056097			Zfr (MGI:1341890)
chr5	32531777	32604078	5p13.3	5p13.3	600503	SUB1, PC4, p15	Sub1, S. cerevisiae, homolog of	SUB1	10923	ENSG00000113387			Sub1 (MGI:104811)
chr5	32689075	32791723	5p14-p12	5p13.3	108962	NPR3, ANPRC	Natriuretic peptide receptor C	NPR3	4883	ENSG00000113389		?Hypertension, salt-resistant (1)	Npr3 (MGI:97373)
chr5	33440695	33468090	5p13-cen	5p13.3	187790	TARS	Threonyl-tRNA synthetase	TARS	6897	ENSG00000113407	linked to LARS		Tars (MGI:106314)
chr5	33523534	33892191	5q35	5p13.3-p13.2	606184	ADAMTS12	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 12	ADAMTS12	81792	ENSG00000151388			Adamts12 (MGI:2146046)
chr5	33800000	38400000	5p13.2		612595	MS3	Multiple sclerosis, susceptibility to, 3		100271695		associated with rs6897932	{Multiple sclerosis, susceptibility to, 3}, 612595 (2)	
chr5	33936385	33938917	5p15.1-p14	5p13.2	609445	RXFP3, RLN3R1, SALPR, GPCR135	Relaxin/insulin-like family peptide receptor 3	RXFP3	51289	ENSG00000182631			Rxfp3 (MGI:2441827)
chr5	33944615	33984674	5p13.3	5p13.2	606202	SLC45A2, MATP, AIM1, SHEP5, OCA4	Solute carrier family 45, member 2	SLC45A2	51151	ENSG00000164175		Albinism, oculocutaneous, type IV, 606574 (3); [Skin/hair/eye pigmentation 5, black/nonblack hair], 227240 (3), Autosomal recessive; [Skin/hair/eye pigmentation 5, dark/fair skin], 227240 (3), Autosomal recessive; [Skin/hair/eye pigmentation 5, dark/light eyes], 227240 (3), Autosomal recessive	Slc45a2 (MGI:2153040)
chr5	33986985	34008114	5p13.2-q11.1	5p13.2	604489	AMACR, CBAS4, AMACRD	Alpha-methylacyl-CoA racemase	AMACR	23600	ENSG00000242110		Alpha-methylacyl-CoA racemase deficiency, 614307 (3), Autosomal recessive; Bile acid synthesis defect, congenital, 4, 214950 (3), Autosomal recessive	Amacr (MGI:1098273)
chr5	34017857	34244723	5p13	5p13.2	612045	C1ATNF3, CTRP3, CORS26	C1q- and tumor necrosis factor-related protein 3	C1QTNF3	114899	ENSG00000082196			C1qtnf3 (MGI:1932136)
chr5	34656302	34832611	5p13.3-p13.2	5p13.2	606586	RAI14, KIAA1334	Retinoic acid-induced 14	RAI14	26064	ENSG00000039560			Rai14 (MGI:1922896)
chr5	34839163	34900510	5p13.2	5p13.2	616344	TTC23L	Tetratricopeptide repeat domain-containing protein 23-like	TTC23L	153657	ENSG00000205838			Ttc23l (MGI:1923027)
chr5	34905259	34915674	5p13.3-p13.2	5p13.2	603153	RAD1	RAD1, S. pombe, homolog of	RAD1	5810	ENSG00000113456			Rad1 (MGI:1316678)
chr5	34929539	34958963	5p13.2	5p13.2	617048	DNAJC21, DNAJA5, BMFS3	DNAJ/HSP40 homolog, subfamily C, member 21	DNAJC21	134218	ENSG00000168724		Bone marrow failure syndrome 3, 617052 (3), Autosomal recessive	Dnajc21 (MGI:1925371)
chr5	34998098	35048187	5p13	5p13.2	612471	AGXT2, AGT2, BAIBA	Alanine-glyoxylate aminotransferase 2	AGXT2	64902	ENSG00000113492		[Beta-aminoisobutyric acid, urinary excretion of], 210100 (3), Autosomal recessive	Agxt2 (MGI:2146052)
chr5	35048755	35230723	5p13.2	5p13.2	176761	PRLR, MFAB, HPRL	Prolactin receptor	PRLR	5618	ENSG00000113494	mutation identified in 1 family with HPRL	?Hyperprolactinemia, 615555 (3), Autosomal dominant; Multiple fibroadenomas of the breast, 615554 (3), Autosomal dominant	Prlr (MGI:97763)
chr5	35617366	35814610	5p13.2	5p13.2	610172	SPEF2, KPL2, KIAA1770	Sperm flagellar 2	SPEF2	79925	ENSG00000152582			Spef2 (MGI:2443727)
chr5	35856848	35879602	5p13	5p13.2	146661	IL7R, IL7RA, CD127	Interleukin-7 receptor	IL7R	3575	ENSG00000168685		Severe combined immunodeficiency, T-cell negative, B-cell/natural killer cell-positive type, 608971 (3), Autosomal recessive	Il7r (MGI:96562)
chr5	35953088	36001054	5p13.2	5p13.2	616383	UGT3A1	Uridine diphosphate glucuronosyltransferase 3 family, member A1	UGT3A1	133688	ENSG00000145626			Ugt3a1,Ugt3a2 (MGI:2145969,MGI:2146055)
chr5	36035016	36071357	5p13.2	5p13.2	616384	UGT3A2	Uridine diphosphate glucuronosyltransferase 3 family, member A2	UGT3A2	167127	ENSG00000168671			
chr5	36152042	36184040	5p13	5p13.2	601436	SKP2	S-phase kinase-associated protein 2 (p45)	SKP2	6502	ENSG00000145604			Skp2 (MGI:1351663)
chr5	36192588	36242278	5p13.2	5p13.2	615787	NADK2, C5orf33, DECRD	NAD kinase 2, mitochondrial	NADK2	133686	ENSG00000152620	mutation identified in 1 DECRD family	?2,4-dienoyl-CoA reductase deficiency, 616034 (3), Autosomal recessive	Nadk2 (MGI:1915896)
chr5	36246918	36301908	6p13.2	5p13.2	616391	RANBP3L	RAN-binding protein 3-like	RANBP3L	202151	ENSG00000164188			Ranbp3l (MGI:2444654)
chr5	36606354	36688333	5p13	5p13.2	600111	SLC1A3, EAAT1, EA6	Solute carrier family 1 (glial high affinity glutamate transporter), member 3	SLC1A3	6507	ENSG00000079215		Episodic ataxia, type 6, 612656 (3), Autosomal dominant	Slc1a3 (MGI:99917)
chr5	36876758	37065818	5p13.1	5p13.2	608667	NIPBL, CDLS1	Nipped-B-like (delangin)	NIPBL	25836	ENSG00000164190		Cornelia de Lange syndrome 1, 122470 (3), Autosomal dominant	Nipbl (MGI:1913976)
chr5	37063927	37249498	5p13.2	5p13.2	614571	C5orf42, JBTS17, OFD6	Chromosome 5 open reading frame 42	CPLANE1	65250	ENSG00000197603		Joubert syndrome 17, 614615 (3), Autosomal recessive; Orofaciodigital syndrome VI, 277170 (3), Autosomal recessive	2410089E03Rik (MGI:1920942)
chr5	37291632	37371125	5p13	5p13.2	606694	NUP155, KIAA0791, ATFB15	Nucleoporin, 155kD	NUP155	9631	ENSG00000113569	mutation identified in 1 ATFB15 family	?Atrial fibrillation 15, 615770 (3), Autosomal recessive	Nup155 (MGI:2181182)
chr5	37379259	37752671	5p13.2	5p13.2	617233	WDR70	WD repeat-containing protein 70	WDR70	55100	ENSG00000082068			Wdr70 (MGI:1921020)
chr5	37812676	37840043	5p13.1-p12	5p13.2	600837	GDNF, HSCR3	Glial cell line derived neurotrophic factor	GDNF	2668	ENSG00000168621		Central hypoventilation syndrome, 209880 (3), Autosomal dominant; {Hirschsprung disease, susceptibility to, 3}, 613711 (3), Autosomal dominant; {Pheochromocytoma, modifier of}, 171300 (3), Autosomal dominant	Gdnf (MGI:107430)
chr5	38258408	38465479	5p13.2-p13.1	5p13.2-p13.1	617683	EGFLAM, PIKA, AGRINL	EGF-like, fibronectin type III, and laminin G domains-containing protein	EGFLAM	133584	ENSG00000164318			Egflam (MGI:2146149)
chr5	38400000	42500000	5p13.1		612262	IBD18	Inflammatory bowel disease 18		100190931		associated with rs1373692	{Inflammatory bowel disease 18}, 612262 (2)	
chr5	38474962	38606289	5p13.1	5p13.1	151443	LIFR, STWS, SWS, SJS2	Leukemia inhibitory factor receptor	LIFR	3977	ENSG00000113594		Stuve-Wiedemann syndrome/Schwartz-Jampel type 2 syndrome, 601559 (3), Autosomal recessive	Lifr (MGI:96788)
chr5	38845857	38945578	5p13.1	5p13.1	601743	OSMR, OSMRB, PLCA1	Oncostatin M receptor	OSMR	9180	ENSG00000145623		Amyloidosis, primary localized cutaneous, 1, 105250 (3), Autosomal dominant	Osmr (MGI:1330819)
chr5	39105251	39274499	5p13.1	5p13.1	602731	FYB, SLAP130, ADAP, THC3	FYN-binding protein	FYB1	2533	ENSG00000082074		Thrombocytopenia 3, 273900 (3), Autosomal recessive	Fyb (MGI:1346327)
chr5	39284143	39364559	5p13	5p13.1	120940	C9, C9D, ARMD15	Complement component-9	C9	735	ENSG00000113600		C9 deficiency, 613825 (3); {Macular degeneration, age-related, 15, susceptibility to}, 615591 (3)	C9 (MGI:1098282)
chr5	39371673	39425232	5p13	5p13.1	601236	DAB2, DOC2	Disabled, Drosophila, homolog of, 2 (differentially expressed in ovarian cancer-2)	DAB2	1601	ENSG00000153071			Dab2 (MGI:109175)
chr5	40679929	40740935	5p13.1	5p13.1	601586	PTGER4	Prostaglandin E receptor 4, EP4 subtype	PTGER4	5734	ENSG00000171522			Ptger4 (MGI:104311)
chr5	40759378	40798194	5p12	5p13.1	602739	PRKAA1	Protein kinase, AMP-activated, catalytic, alpha-1	PRKAA1	5562	ENSG00000132356			Prkaa1 (MGI:2145955)
chr5	40831327	40835284	5p	5p13.1	604181	RPL37	Ribosomal protein L37	RPL37	6167	ENSG00000145592			Rpl37 (MGI:1914531)
chr5	40841196	40855353	5p13.1-p12	5p13.1	609986	CARD6, CINCIN1	Caspase recruitment domain-containing protein 6	CARD6	84674	ENSG00000132357			Card6 (MGI:3032959)
chr5	40909251	40984639	5p13	5p13.1	217070	C7	Complement component-7	C7	730	ENSG00000112936		C7 deficiency, 610102 (3)	C7 (MGI:88235)
chr5	41142145	41261485	5p13	5p13.1	217050	C6	Complement component-6	C6	729	ENSG00000039537		C6 deficiency, 612446 (3); Combined C6/C7 deficiency (3)	C6 (MGI:88233)
chr5	41306945	41510627	5p13.1	5p13.1	617016	PLCXD3	Phospholipase C, phosphatidylinositol-specific, X domain-containing protein 3	PLCXD3	345557	ENSG00000182836			Plcxd3 (MGI:2442605)
chr5	41730064	41870688	5p13	5p13.1	601424	OXCT1, OXCT, SCOT	3-oxoacid CoA transferase 1	OXCT1	5019	ENSG00000083720		Succinyl CoA:3-oxoacid CoA transferase deficiency, 245050 (3)	Oxct1 (MGI:1914291)
chr5	41918060	42040229	5p12	5p13.1	609090	FBXO4, FBX4	F-box only protein 4	FBXO4	26272	ENSG00000151876			Fbxo4 (MGI:2146220)
chr5	42423774	42721877	5p13-p12	5p13-p12	600946	GHR, GHIP	Growth hormone receptor	GHR	2690	ENSG00000112964		Growth hormone insensitivity, partial, 604271 (3); {Hypercholesterolemia, familial, modifier of}, 143890 (3), Autosomal dominant; Increased responsiveness to growth hormone (3); Laron dwarfism, 262500 (3), Autosomal recessive	Ghr (MGI:95708)
chr5	42799879	42812075	5p11	5p12	601484	SELENOP, SEPP1	Selenoprotein P	SELENOP	6414	ENSG00000250722			Selenop (MGI:894288)
chr5	43039079	43040344	5p12	5p12	611296	ANXA2R, C5orf39, AX2R, AXIIR	Annexin A2 receptor	ANXA2R	389289	ENSG00000177721			
chr5	43120842	43176323	5p12-p11	5p12	604073	ZNF131	Zinc finger protein -31	ZNF131	7690	ENSG00000172262			Zfp131 (MGI:1919715)
chr5	43287469	43313511	5p14-p13	5p12	142940	HMGCS1	3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1	HMGCS1	3157	ENSG00000112972	like HMGCR, regulated transcriptionally by steroid		Hmgcs1 (MGI:107592)
chr5	43356971	43412390	5p12	5p12	605240	CCL28	Chemokine, C-C motif, ligand 28	CCL28	56477	ENSG00000151882			Ccl28 (MGI:1861731)
chr5	43526266	43557418	5p12	5p12	605184	PAIP1	Polyadenylate-binding protein-interacting protein 1	PAIP1	10605	ENSG00000172239			Paip1 (MGI:2384993)
chr5	43601091	43705565	5p12	5p12	607878	NNT, GCCD4	Nicotinamide nucleotide transhydrogenase	NNT	23530	ENSG00000112992		Glucocorticoid deficiency 4, with or without mineralocorticoid deficiency, 614736 (3), Autosomal recessive	
chr5	44301654	44389705	5p13-p12	5p12	602115	FGF10	Fibroblast growth factor-10	FGF10	2255	ENSG00000070193		Aplasia of lacrimal and salivary glands, 180920 (3), Autosomal dominant; LADD syndrome, 149730 (3), Autosomal dominant	Fgf10 (MGI:1099809)
chr5	44808924	44815513	5p12-q11	5p12	611991	MRPS30	Mitochondrial ribosomal protein S30	MRPS30	10884	ENSG00000112996			Mrps30 (MGI:1926237)
chr5	45254949	45696117	5p12	5p12	602780	HCN1, BCNG1, EIEE24	Hyperpolarization-activated cyclic nucleotide-gated potassium channel 1	HCN1	348980	ENSG00000164588		Epileptic encephalopathy, early infantile, 24, 615871 (3), Autosomal dominant	Hcn1 (MGI:1096392)
chr5	48800000	181538259	5q		609657	BSZQTL2	Bone size quantitative trait locus 2		100188794			{Bone size QTL}, 609657 (2)	
chr5	50396191	50443298	5q11.1	5q11.1	615669	EMB, GP70	Embigin	EMB	133418	ENSG00000170571			Emb (MGI:95321)
chr5	51383123	51394729	5q	5q11.1	600366	ISL1	ISL1 transcription factor, LIM/homeodomain (islet-1)	ISL1	3670	ENSG00000016082	between D5S395 and D5S407; proximal 5q		Isl1 (MGI:101791)
chr5	52787939	52802616	5q11.2	5q11.2	605757	PELO	Pelota, Drosophila, homolog of	PELO	53918	ENSG00000152684			Pelo (MGI:2145154)
chr5	52788301	52953654	5q11.2	5q11.2	192968	ITGA1, VLA1	Integrin, alpha-1	ITGA1	3672	ENSG00000213949			Itga1 (MGI:96599)
chr5	52989325	53094778	5q23-q31	5q11.2	192974	ITGA2, CD49B, BR, BDPLT9	Integrin, alpha-2 (CD49B; alpha-2 subunit of VLA-2 receptor; platelet antigen Br)	ITGA2	3673	ENSG00000164171		?Glycoprotein Ia deficiency, 614200 (1), Autosomal dominant	Itga2 (MGI:96600)
chr5	53095678	53109771	5q11	5q11.2	603708	MOCS2, MPTS, MOCODB	Molybdenum cofactor synthesis-2	MOCS2	4338	ENSG00000164172		Molybdenum cofactor deficiency B, 252160 (3), Autosomal recessive	Mocs2 (MGI:1336894)
chr5	53480337	53487133	5q11.2	5q11.2	136470	FST, FS	Follistatin	FST	10468	ENSG00000134363			Fst (MGI:95586)
chr5	53560609	53683340	5q11.1	5q11.2	602694	NDUFS4, AQDQ	NADH dehydrogenase (ubiquinone) Fe-S protein 4, 18kD (NADH-coenzyme Q reductase)	NDUFS4	4724	ENSG00000164258		Leigh syndrome, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufs4 (MGI:1343135)
chr5	54455600	54456383	5q11.2	5q11.2	604624	HSPB3, HSPL27, HMN2C, DHMN2C	Heat-shock 27kD protein 3	HSPB3	8988	ENSG00000169271	mutation identified in 1 HMN2C family	?Neuronopathy, distal hereditary motor, type IIC, 613376 (3), Autosomal dominant	Hspb3 (MGI:1928479)
chr5	54977866	54985585	5q11.2	5q11.2	601521	ESM1	Endothelial cell-specific molecule 1	ESM1	11082	ENSG00000164283			Esm1 (MGI:1918940)
chr5	55024278	55034131	5q11.2	5q11.2	600784	GZMK, TRYP2	Granzyme K	GZMK	3003	ENSG00000113088			Gzmk (MGI:1298232)
chr5	55102645	55110251	5q11-q12	5q11.2	140050	GZMA, CTLA3, HFSP	Granzyme A (Cytotoxic T-lymphocyte-associated serine esterase-3; Hanukah factor serine protease)	GZMA	3001	ENSG00000145649			Gzma (MGI:109266)
chr5	55160117	55167300	5q11.2	5q11.2	617172	GPX8	Glutathione peroxidase 8	GPX8	493869	ENSG00000164294			Gpx8 (MGI:1916840)
chr5	55170531	55170621	5q11.2	5q11.2	613131	MIR449A, MIRN449A	Micro RNA 449A	MIR449A	554213				
chr5	55170645	55170741	5q11.2	5q11.2	613132	MIR449B, MIRN449B	Micro RNA 449B	MIR449B	693123				
chr5	55218790	55227314	5q11.2	5q11.2	614086	IDAS	IDAS	MCIDAS	345643	ENSG00000234602			Mcidas (MGI:3648807)
chr5	55231151	55233716	5q11.2	5q11.2	607752	CCNO, UNG2, CILD29	Cyclin O	CCNO	10309	ENSG00000152669		Ciliary dyskinesia, primary, 29, 615872 (3), Autosomal recessive	Ccno (MGI:2145534)
chr5	55256054	55307721	5q11.2	5q11.2	612720	DHX29	DEAH (Asp-Glu-Ala-His) box polypeptide 29	DHX29	54505	ENSG00000067248			Dhx29 (MGI:2145374)
chr5	55424841	55535077	5q11.2	5q11.2	607124	PLPP1, PPAP2A	Phopshplipid phosphatase 1	PLPP1	8611	ENSG00000067113			
chr5	55625844	55712342	5q11.2	5q11.2	616203	SLC38A9, URLC11	Solute carrier family 38, member 9	SLC38A9	153129	ENSG00000177058			Slc38a9 (MGI:1918839)
chr5	55737993	55817145	5q11.2-q12	5q11.2	605281	DDX4, VASA	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 4 (vasa, Drosophila, homolog of)	DDX4	54514	ENSG00000152670			Ddx4 (MGI:102670)
chr5	55840333	55922853	5q11.2	5q11.2	609510	IL31RA, GLMR, GPL, PLCA2	Interleukin 31 receptor A	IL31RA	133396	ENSG00000164509	mutation identified in 1 PLCA2 patient	?Amyloidosis, primary localized cutaneous, 2, 613955 (3), Autosomal dominant	Il31ra (MGI:2180511)
chr5	55935094	55994992	5q11	5q11.2	600694	IL6ST	Interleukin-6 signal transducer (gp130, oncostatin M receptor)	IL6ST	3572	ENSG00000134352			Il6st (MGI:96560)
chr5	56099679	56233358	5q11	5q11.2	615189	ANKRD55	Ankyrin repeat domain-containing protein 55	ANKRD55	79722	ENSG00000164512			Ankrd55 (MGI:1924568)
chr5	56815072	56896151	5q11.2	5q11.2	600982	MAP3K1, MEKK1, MEKK, SRXY6	Mitogen-activated protein kinase kinase kinase 1	MAP3K1	4214	ENSG00000095015		46XY sex reversal 6, 613762 (3), Autosomal dominant	Map3k1 (MGI:1346872)
chr5	57173841	57264678	5q11.2	5q11.2	608412	GPBP1, GPBP	GC-rich promoter-binding protein 1	GPBP1	65056	ENSG00000062194			Gpbp1 (MGI:1920524)
chr5	57480015	57482808	5q11.2	5q11.2	614835	ACTBL2	Actin, beta-like, 2	ACTBL2	345651	ENSG00000169067			Actbl2 (MGI:2444552)
chr5	58453981	58460138	5q12-q13	5q11.2	607023	PLK2, SNK	Polo-like kinase 2	PLK2	10769	ENSG00000145632			Plk2 (MGI:1099790)
chr5	58582187	58859393	5q13	5q11.2	612829	RAB3C	Ras-associated protein RAB3C	RAB3C	115827	ENSG00000152932			Rab3c (MGI:1914545)
chr5	58969037	60524328	5q12	5q11.2-q12.1	600129	PDE4D, DPDE3, STRK1, ACRDYS2	Phosphodiesterase-4D, cAMP-specific (dunce, Drosophila, homolog of, phosphodiesterase-E3)	PDE4D	5144	ENSG00000113448		Acrodysostosis 2, with or without hormone resistance, 614613 (3), Autosomal dominant; {Stroke, susceptibility to, 1}, 606799 (3)	
chr5	59600000	67400000	5q12		615668	DEL5q12, C5DELq12	Chromosome 5q12 deletion syndrome					Chromosome 5q12 deletion syndrome, 615668 (4), Autosomal dominant	
chr5	59600000	93000000	5q12-q14		611364	EJM4	Myoclonic epilepsy, juvenile, 4		100126594		max lod at D5S459	Myoclonic epilepsy, juvenile, 4, 611364 (2), Autosomal dominant	
chr5	60487712	60547656	5q12	5q12.1	604991	PART1	Prostate androgen-regulated transcript 1	PART1	25859				
chr5	60596911	60700165	5q12.1	5q12.1	616073	DEPDC1B	DEP domain-containing protein 1B	DEPDC1B	55789	ENSG00000035499			Depdc1b (MGI:2145425)
chr5	60751788	60844291	5q12.1	5q12.1	614451	ELOVL7	Elongation of very long chain fatty acids-like 6	ELOVL7	79993	ENSG00000164181			Elovl7 (MGI:1921809)
chr5	60873831	60945077	5q12	5q12.1	609412	ERCC8, CKN1, CSA, UVSS2	Excision repair cross-complementing rodent repair deficiency, complementation group 8	ERCC8	1161	ENSG00000049167		Cockayne syndrome, type A, 216400 (3), Autosomal recessive; UV-sensitive syndrome 2, 614621 (3), Autosomal recessive	Ercc8 (MGI:1919241)
chr5	60945128	61153036	5q12.1	5q12.1	609653	NDUFAF2, NDUFA12L, MMTN, B17.2L	NADH dehydrogenase 1 alpha subcomplex, assembly factor 2	NDUFAF2	91942	ENSG00000164182	pseudogene on chr.2	Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufaf2 (MGI:1922847)
chr5	61332272	61546171	5q12.1	5q12.1	615951	ZSWIM6, KIAA1577, AFND, NEDMAGA	Zinc finger SWIM domain-containing protein 6	ZSWIM6	57688	ENSG00000130449		Acromelic frontonasal dysostosis, 603671 (3), Autosomal dominant; Neurodevelopmental disorder with movement abnormalities, abnormal gait, and autistic features, 617865 (3), Autosomal dominant	Zswim6 (MGI:1914513)
chr5	62306161	62387183	5q12.1	5q12.1	602591	KIF2A, CDCBM3	Kinesin, heavy chain, 2	KIF2A	3796	ENSG00000068796		Cortical dysplasia, complex, with other brain malformations 3, 615411 (3), Autosomal dominant	Kif2a (MGI:108390)
chr5	62387952	62403959	5q12.1	5q12.1	612499	DIMT1L, DIM1, HUSSY5	Dimethyladenosine transferase 1-like	DIMT1	27292	ENSG00000086189	previously assigned to 8p12		Dimt1 (MGI:1913504)
chr5	62412745	62628588	5q12.1	5q12.1	610889	IPO11, RANBP11, SLRN	Importin 11	IPO11	51194	ENSG00000086200			Ipo11 (MGI:2442377)
chr5	63960047	63962291	5q11.2-q13	5q12.3	109760	HTR1A, ADRB2RL1, PFMCD	5-hydroxytryptamine (serotonin) receptor-1A	HTR1A	3350	ENSG00000178394		Periodic fever, menstrual cycle dependent, 614674 (3), Autosomal dominant	Htr1a (MGI:96273)
chr5	64165310	64372878	5q12.3	5q12.3	616015	RNF180, RINES	RING finger protein 180	RNF180	285671	ENSG00000164197			Rnf180 (MGI:1919066)
chr5	64505946	64612329	5q12.3	5q12.3	610890	RGS7BP, R7BP	Regulator of G protein signaling 7-binding protein	RGS7BP	401190	ENSG00000186479			Rgs7bp (MGI:106334)
chr5	64768917	65018762	5q12.3	5q12.3	617170	CWC27, SDCCAG10, RPSKA	CWC27 spliceosome-associated protein, X. cerevisiae, homolog of	CWC27	10283	ENSG00000153015		Retinitis pigmentosa with or without skeletal anomalies, 250410 (3), Autosomal recessive	Cwc27 (MGI:1914535)
chr5	65148735	65482662	5q12	5q12.3	605008	ADAMTS6	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 6	ADAMTS6	11174	ENSG00000049192			Adamts6 (MGI:1347348)
chr5	65488918	65563193	5p15.2-q12.3	5q12.3	611502	CEMPK, SOLT	Centromeric protein K	CENPK	64105	ENSG00000123219			Cenpk (MGI:1926210)
chr5	65589679	65624359	5q12.3	5q12.3	601747	TRIM23, ARD1	Tripartite motif-containing protein 23	TRIM23	373	ENSG00000113595			Trim23 (MGI:1933161)
chr5	65722195	65829282	5q12.3	5q12.3	611530	NLN, KIAA1226, AGTBP	Neurolysin	NLN	57486	ENSG00000123213			Nln (MGI:1923055)
chr5	65926553	66081022	5q12	5q12.3	606944	ERBB2IP, ERBIN	ERBB2 interacting protein	ERBIN	55914	ENSG00000112851			Erbin (MGI:1890169)
chr5	66144217	66183615	5q11.2-q12.1	5q12.3	609268	SREK1, SFRS12, SRRp508	Splicing regulatory glutamine/lysine-rich protein 1	SREK1	140890	ENSG00000153914			Srek1 (MGI:2145245)
chr5	67182274	67196788	5q12	5q12.3	602226	CD180, LY64, RP105	CD180 antigen	CD180	4064	ENSG00000134061			Cd180 (MGI:1194924)
chr5	67400000	93000000	5q13-q14		607087	AAT2, FAA2	Aortic aneurysm, familial thoracic 2		252843			Aortic aneurysm, familial thoracic 2, 607087 (2)	
chr5	67400000	115900000	5q13-q22		605544	GINGF2, GGF2, HGF2	Fibromatosis, gingival, 2	GINGF2	64644		formerly GINGF2 used for a locus on 2p16-p13	Fibromatosis, gingival, 2, 605544 (2)	
chr5	67400000	77600000	5q13		612306	TSHQTL1	Thyroid-stimulating hormone level QTL 1		100190789		associated with rs4704397	[Thyroid-stimulating hormone level QTL 1], 612306 (2)	
chr5	68215736	68301820	5q13	5q13.1	171833	PIK3R1, GRB1, AGM7, SHORT, IMD36	Phosphatidylinositol 3-kinase, regulatory, 1	PIK3R1	5295	ENSG00000145675	mutation identified in 1 AGM7 family	?Agammaglobulinemia 7, autosomal recessive, 615214 (3), Autosomal recessive; Immunodeficiency 36, 616005 (3), Autosomal dominant; SHORT syndrome, 269880 (3), Autosomal dominant	Pik3r1 (MGI:97583)
chr5	69093948	69131071	5q11.2	5q13.1-q13.2	607819	SLC30A5, ZNT5, ZTL1	Solute carrier family 30 (zinc transporter), member 5	SLC30A5	64924	ENSG00000145740			Slc30a5 (MGI:1916298)
chr5	69167009	69178244	5q12	5q13.2	123836	CCNB1	Cyclin B1	CCNB1	891	ENSG00000134057			Ccnb1,Ccnb1-ps (MGI:88302,MGI:3648694)
chr5	69189547	69210356	5q13.2	5q13.2	605607	CENPH	Centromeric protein H	CENPH	64946	ENSG00000153044			Cenph (MGI:1349448)
chr5	69217745	69230157	5q12.1	5q13.2	611996	MRPS36	Mitochondrial ribosomal protein S36	MRPS36	92259	ENSG00000134056	6 pseudogenes		Mrps36 (MGI:1913378)
chr5	69234794	69277429	5q13.2	5q13.2	601955	CDK7, STK1, CAK1	Cyclin-dependent kinase 7 (homolog of Xenopus MO15 cdk-activating kinase)	CDK7	1022	ENSG00000134058	previously mapped to 2p15-cen		Cdk7 (MGI:102956)
chr5	69273086	69333069	5q13.2	5q13.2	613781	CCDC125, KENAE	Coiled-coil domain-containing protein 125	CCDC125	202243	ENSG00000183323			Ccdc125 (MGI:1923291)
chr5	69364742	69370012	5q11.2-q13.1	5q13.2	600822	TAF9, TAF2G, TAFII32	TAF9 RNA polymerase II, TATA box-binding protein-associated factor, 32kD	TAF9	6880	ENSG00000273841			Taf9 (MGI:1888697)
chr5	69369296	69414800	5q13	5q13.2	603139	RAD17	RAD17, S. pombe, homolog of	RAD17	5884	ENSG00000152942			Rad17 (MGI:1333807)
chr5	69415111	69444021	5q13.1	5q13.2	610572	MARVELD2, MARVD2, TRIC, DFNB49	Marvel domain-containing protein 2 (tricellulin)	MARVELD2	153562	ENSG00000152939		Deafness, autosomal recessive 49, 610153 (3), Autosomal recessive	Marveld2 (MGI:2446166)
chr5	69492291	69558103	5q13.1	5q13.2	602876	OCLN, BLCPMG, PTORCH1	Occludin	OCLN	100506658	ENSG00000197822		Pseudo-TORCH syndrome 1, 251290 (3), Autosomal recessive	Ocln (MGI:106183)
chr5	70049522	70077594	5q12.2-q13.3	5q13.2	601627	SMN2	Survival of motor neuron 2, centromeric	SMN2	6607	ENSG00000205571		{Spinal muscular atrophy, type III, modifier of}, 253400 (3), Autosomal recessive	Smn1 (MGI:109257)
chr5	70900662	70918529	5q12.2-q13.3	5q13.2	603011	SERF1A, H4F5, SMAM1	Small EDRK-rich factor 1A	SERF1A	8293	ENSG00000205572			Serf1 (MGI:1337114)
chr5	70924940	70953014	5q12.2-q13.3	5q13.2	600354	SMN1, SMA1, SMA2, SMA3, SMA4	Survival of motor neuron 1, telomeric	SMN1	6606	ENSG00000205571		Spinal muscular atrophy-1, 253300 (3), Autosomal recessive; Spinal muscular atrophy-2, 253550 (3), Autosomal recessive; Spinal muscular atrophy-3, 253400 (3), Autosomal recessive; Spinal muscular atrophy-4, 271150 (3), Autosomal recessive	Smn1 (MGI:109257)
chr5	70968482	71025113	5q12.2-q13.3	5q13.2	600355	BIRC1, NAIP	Baculoviral IAP repeat-containing 1 (neuronal apoptosis inhibitory protein)	NAIP	4671	ENSG00000249437	?involved in SMA		Naip2 (MGI:1298226)
chr5	71035123	71109112	5q12.2-q13.3	5q13.2	601748	GTF2H2	General transcription factor IIH, polypeptide 2 (44kD subunit)	GTF2H2	2966	ENSG00000145736	2 copies		Gtf2h2 (MGI:1345669)
chr5	71375784	71385992	5q12-q13	5q13.2	176794	PMCHL2	Pro-melanin-concentrating hormone-like 2	PMCHL2	5370				
chr5	71455614	71578287	5q13	5q13.2	607012	BDP1, TFNR	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB	BDP1	55814	ENSG00000145734			Bdp1 (MGI:1347077)
chr5	71587287	71658705	5q12-q13	5q13.2	609014	MCCC2, MCCB	3-Methylcrotonyl-CoA carboxylase 2	MCCC2	64087	ENSG00000131844		3-Methylcrotonyl-CoA carboxylase 2 deficiency, 210210 (3), Autosomal recessive	Mccc2 (MGI:1925288)
chr5	71719162	71721047	5q13.2	5q13.2	602606	CARTPT, CART	Cocaine- and amphetamine-regulated transcript prepropeptide	CARTPT	9607	ENSG00000164326	mutation identified in 1 family	{?Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Cartpt (MGI:1351330)
chr5	72107267	72209569	5q13	5q13.2	157129	MAP1B	Microtubule-associated protein-1B	MAP1B	4131	ENSG00000131711			Map1b (MGI:1306778)
chr5	72219408	72320256	5q13.2	5q13.2	611989	MRPS27, KIAA0264	Mitochondrial ribosomal protein S27	MRPS27	23107	ENSG00000113048			Mrps27 (MGI:1919064)
chr5	72320366	72368394	5q13.2	5q13.2	615484	PTCD2	Pentatricopeptide repeat domain-containing protein 2	PTCD2	79810	ENSG00000049883			Ptcd2 (MGI:1916177)
chr5	72439898	72507421	5q13.2	5q13.2	610159	ZNF366, DCSCRIPT	Zinc finger protein 366	ZNF366	167465	ENSG00000178175			Zfp366 (MGI:2178429)
chr5	72816590	72914387	5q13.2	5q13.2	602901	TNPO1, KPNB2, MIP1	Transportin 1	TNPO1	3842	ENSG00000083312			Tnpo1 (MGI:2681523)
chr5	72955980	73090521	5q13.2	5q13.2	613438	FCHO2	FCH domain-only protein 2	FCHO2	115548	ENSG00000157107			Fcho2 (MGI:3505790)
chr5	73173195	73175142	5q13.2	5q13.2	614909	TMEM174	Transmembrane protein 174	TMEM174	134288	ENSG00000164325			Tmem174 (MGI:1915594)
chr5	73446255	73448526	5q12-q13	5q13.2	601091	FOXD1, FKHL8	Forkhead box D1	FOXD1	2297	ENSG00000251493			Foxd1 (MGI:1347463)
chr5	73552199	73565685	5q12-q13	5q13.2	605787	ANKRA2, ANKRA	Ankyrin repeat-containing protein, family A, member 2	ANKRA2	57763	ENSG00000164331			Ankra2 (MGI:1915808)
chr5	73565740	73583376	5q13.2	5q13.2	616194	UTP15	UTP15, U3 small nucleolar ribonucleoprotein, S. cerevisiae, homolog of	UTP15	84135	ENSG00000164338			Utp15 (MGI:2145443)
chr5	73626157	73941992	5q13.2	5q13.2	612790	RGNEF, p190RHOGEF	Rgnef, mouse, homolog of	ARHGEF28	64283	ENSG00000214944			Arhgef28 (MGI:1346016)
chr5	74627405	74641423	5q13	5q13.3	605173	ENC1, PIG10	Ectodermal-neural cortex 1	ENC1	8507	ENSG00000171617			Enc1 (MGI:109610)
chr5	74640022	74721287	5q13	5q13.3	606873	HEXB	Hexosaminidase B, beta polypeptide	HEXB	3074	ENSG00000049860		Sandhoff disease, infantile, juvenile, and adult forms, 268800 (3), Autosomal recessive	Hexb (MGI:96074)
chr5	74721203	74767370	5q13	5q13.3	606544	EFG2	Elongation factor G2	GFM2	84340	ENSG00000164347			Gfm2 (MGI:2444783)
chr5	74765428	74776911	5q13.3	5q13.3	612497	TINP1, NSA2, HUSSY29	Transforming growth factor-beta-inducible nuclear protein 1	NSA2	10412	ENSG00000164346			Nsa2 (MGI:1913883)
chr5	74777573	74867993	5q13.3	5q13.3	615769	FAM169A, SLAP75, KIAA0888	Family with sequence similarity 169, member A	FAM169A	26049	ENSG00000198780			Fam169a (MGI:2444268)
chr5	75027463	75030898	5q12	5q13.3	616782	GCNT4	Glucosaminyl (N-acetyl) transferase 4, core 2	GCNT4	51301	ENSG00000176928			Gcnt4 (MGI:2684919)
chr5	75336333	75362100	5q13.3-q14	5q13.3	142910	HMGCR, LDLCQ3	3-hydroxy-3-methylglutaryl-Coenzyme A reductase; HMG CoA reductase	HMGCR	3156	ENSG00000113161		[Low density lipoprotein cholesterol level QTL 3] (3); [Statins, attenuated cholesterol lowering by] (3)	Hmgcr (MGI:96159)
chr5	75368485	75511980	5q13.3	5q13.3	604677	COL4A3BP, GPBP, CERT, MRD34	COL4A3-binding protein (ceramide transporter)	COL4A3BP	10087	ENSG00000113163		Mental retardation, autosomal dominant 34, 616351 (3), Autosomal dominant	Col4a3bp (MGI:1915268)
chr5	75511307	75605819	5q13.1	5q13.3	605650	POLK, POLQ, DINB1	Polymerase, DNA, kappa	POLK	51426	ENSG00000122008			Polk (MGI:1349767)
chr5	75674197	75717487	5q13.1	5q13.3	617880	POC5, C5orf37	POC5 centriolar protein	POC5	134359	ENSG00000152359			Poc5 (MGI:1914713)
chr5	75847462	76353938	5q13.3	5q13.3	610291	SV2C	Synaptic vesicle glycoprotein 2C	SV2C	22987	ENSG00000122012			Sv2c (MGI:1922459)
chr5	76403254	76708131	5q11-q13	5q13.3	605401	IQGAP2	IQ motif-containing GTPase-activating protein-2	IQGAP2	10788	ENSG00000145703			Iqgap2 (MGI:2449975)
chr5	76615481	76623433	5q13	5q13.3	601919	F2RL2, PAR3	Coagulation factor II receptor-like 2 (protease-activated receptor 3)	F2RL2	2151	ENSG00000164220	order: PAR2-PAR1-PAR3		F2rl2 (MGI:1298208)
chr5	76716042	76735779	5q13	5q13.3	187930	F2R, CF2R, PAR1	Coagulation factor II (thrombin) receptor	F2R	2149	ENSG00000181104	within 900kb of GPR11		F2r (MGI:101802)
chr5	76818976	76835314	5q13	5q13.3	600933	F2RL1, GPR11, PAR2	Coagulation factor II, thrombin, receptor-like 1 (G protein-coupled receptor-11)	F2RL1	2150	ENSG00000164251	within 900kb of F2R		F2rl1 (MGI:101910)
chr5	76849952	76952881	5q13.3	5q13.3	610103	S100Z	S100 calcium-binding protein, zeta	S100Z	170591	ENSG00000171643			S100z (MGI:2685471)
chr5	76952854	76981142	5q11.2-q13.3	5q13.3	122559	CRHBP	Corticotropin releasing hormone-binding protein	CRHBP	1393	ENSG00000145708			Crhbp (MGI:88497)
chr5	77030384	77065233	5q13.3	5q13.3	608464	AGGF1, VG5Q, HUS84971, FLJ10283	Angiogenic factor with G patch and FHA domains 1	AGGF1	55109	ENSG00000164252			Aggf1 (MGI:1913799)
chr5	77076676	77087245	5q13.3	5q13.3	615250	ZBED3	Zinc finger BED domain-containing protein 3	ZBED3	84327	ENSG00000132846			Zbed3 (MGI:1919364)
chr5	77180251	77428255	5q13	5q13.3	603390	PDE8B, PPNAD3, ADSD	Phosphodiesterase 8B	PDE8B	8622	ENSG00000284762		Pigmented nodular adrenocortical disease, primary, 3, 614190 (3); Striatal degeneration, autosomal dominant, 609161 (3), Autosomal dominant	Pde8b (MGI:2443999)
chr5	77426651	77620610	5q13.3	5q13.3-q14.1	617502	WDR41	WD repeat-containing protein 41	WDR41	55255	ENSG00000164253			Wdr41 (MGI:2445123)
chr5	77600000	93000000	5q14		187260	HBT	Telangiectasia, hereditary benign	TELAB1	338411		max lod at D5S641	Telangiectasia, hereditary benign, 187260 (2), Autosomal dominant	
chr5	77600000	110200000	5q14.1-q21.3		614622	KTCN5	Keratoconus 5		100885801		between D5S2499 and D5S495	Keratoconus 5, 614622 (2), Autosomal dominant	
chr5	77628711	77638696	5q13.3	5q14.1	604529	OTP	Orthopedia, Drosophila, homolog of	OTP	23440	ENSG00000171540			Otp (MGI:99835)
chr5	77691168	77776360	5q14.1	5q14.1	610058	TBCA	Tubulin-specific chaperone A	TBCA	6902	ENSG00000171530			Tbca (MGI:107549)
chr5	78002325	78294754	5q14.1	5q14.1	603401	AP3B1, ADTB3A, HPS2	Adaptor-related protein complex 3, beta 1 subunit (adaptin, beta-3a)	AP3B1	8546	ENSG00000132842		Hermansky-Pudlak syndrome 2, 608233 (3), Autosomal recessive	Ap3b1 (MGI:1333879)
chr5	78360502	78480738	5q13.3-q14.1	5q14.1	606911	SCAMP1, SCAMP37	Secretory carrier membrane protein 1	SCAMP1	9522	ENSG00000085365			Scamp1 (MGI:1349480)
chr5	78485214	78770255	5q14.1	5q14.1	609718	LHFPL2, KIAA0206	LHFP-like protein 2	LHFPL2	10184	ENSG00000145685			Lhfpl2 (MGI:2145236)
chr5	78777208	78986086	5q11-q13	5q14.1	611542	ARSB, MPS6	Arylsulfatase B	ARSB	411	ENSG00000113273		Mucopolysaccharidosis type VI (Maroteaux-Lamy), 253200 (3), Autosomal recessive	Arsb (MGI:88075)
chr5	78997563	79069673	5q12.2-q12.3	5q14.1	605849	DMGDH, DMGDHD	Dimethylglycine dehydrogenase	DMGDH	29958	ENSG00000132837		Dimethylglycine dehydrogenase deficiency, 605850 (3), Autosomal recessive	Dmgdh (MGI:1921379)
chr5	79069723	79090073	5q13.1-q13.2	5q14.1	605932	BHMT2	Betaine-homocysteine methyltransferase 2	BHMT2	23743	ENSG00000132840			Bhmt2 (MGI:1891379)
chr5	79111780	79132289	5q13.1-q13.2	5q14.1	602888	BHMT	Betaine-homocysteine methyltransferase	BHMT	635	ENSG00000145692			Bhmt (MGI:1339972)
chr5	79236101	79327214	5q13.2	5q14.1	604279	JMY	Junction-mediating and regulatory protein	JMY	133746	ENSG00000152409			Jmy (MGI:1913096)
chr5	79373823	79513835	5q14.2	5q14.1	604798	HOMER1, HOMER1B, HOMER1C, HOMER1A	Homer, homlog 1 (Drosophila)	HOMER1	9456	ENSG00000152413			Homer1 (MGI:1347345)
chr5	79612416	79688242	5q14.1	5q14.1	614121	PAPD4, GLD2	Poly(A) polymerase-associated domain-containing protein 4	PAPD4	167153	ENSG00000164329			Papd4 (MGI:2140950)
chr5	79689338	79800225	5q12-q13	5q14.1	612193	CMYA5, MYOSPRYN, TRIM76	Cardiomyopathy-associated protein 5	CMYA5	202333	ENSG00000164309			
chr5	79991295	80083752	5q14.1	5q14.1	600715	THBS4	Thrombospondin IV	THBS4	7060	ENSG00000113296			Thbs4 (MGI:1101779)
chr5	80111226	80256081	5q14.1	5q14.1	614551	SERINC5, C5orf12, TPO1	Serine incorporator 5	SERINC5	256987	ENSG00000164300			Serinc5 (MGI:2444223)
chr5	80407614	80483378	5q14.1	5q14.1	608880	ZFYVE16, ENDOFIN, KIAA0305	Zinc finger FYVE domain-containing protein 16	ZFYVE16	9765	ENSG00000039319			Zfyve16 (MGI:2145181)
chr5	80626225	80654980	5q11.2-q13.2	5q14.1	126060	DHFR	Dihydrofolate reductase	DHFR	1719	ENSG00000228716		Megaloblastic anemia due to dihydrofolate reductase deficiency, 613839 (3), Autosomal recessive	Dhfr (MGI:94890)
chr5	80654647	80876814	5q11-q12	5q14.1	600887	MSH3, FAP4	mutS, E. coli, homolog of, 3	MSH3	4437	ENSG00000113318	5' to DHFR	Endometrial carcinoma, somatic, 608089 (3); Familial adenomatous polyposis 4, 617100 (3), Autosomal recessive	Msh3 (MGI:109519)
chr5	80960671	81230161	5q13	5q14.1	606614	RASGRF2	Ras protein-specific guanine nucleotide-releasing factor 2	RASGRF2	5924	ENSG00000113319			Rasgrf2 (MGI:109137)
chr5	81227594	81266397	5q13.3	5q14.1	123295	CKMT2	Creatine kinase, mitochondrial-2 (sarcomeric)	CKMT2	1160	ENSG00000131730			Ckmt2 (MGI:1923972)
chr5	81309044	81394173	5q14.1	5q14.1	614315	ACOT12, CACH	Acyl-CoA thioesterase 12	ACOT12	134526	ENSG00000172497			Acot12 (MGI:1921406)
chr5	81412806	81751252	5q13.3	5q14.1	607389	SSBP2	Single-stranded DNA-binding protein 2	SSBP2	23635	ENSG00000145687			Ssbp2 (MGI:1914220)
chr5	81972020	82258501	5q14.2	5q14.1-q14.2	610800	ATG10, APG10	Autophagy 10, S. cerevisiae, homolog of	ATG10	83734	ENSG00000152348			Atg10 (MGI:1914045)
chr5	82100000	83500000	5q14.2		614317	VUR4	Vesicoureteral reflux 4		100820757		closest marker rs1501656	Vesicoureteral reflux 4, 614317 (2)	
chr5	82273319	82278415	5q14.2	5q14.2	603683	RPS23, BTDD, MCINS	Ribosomal protein S23	RPS23	6228	ENSG00000186468		Brachycephaly, trichomegaly, and developmental delay, 617412 (3), Autosomal dominant	Rps23 (MGI:1913725)
chr5	83064203	83064336	5q14.2	5q14.2	611329	SCARNA18	Small cajal body-specific RNA 18	SCARNA18	677765		in intron 1 of TMEM167		
chr5	83077408	83370332	5q13-q14	5q14.2	194363	XRCC4, SSMED	X-ray repair, complementing defective, repair in Chinese hamster cells-4	XRCC4	7518	ENSG00000152422	between D5S427 and D5S401	Short stature, microcephaly, and endocrine dysfunction, 616541 (3), Autosomal recessive	Xrcc4 (MGI:1333799)
chr5	83471673	83582302	5q12-q14	5q14.2-q14.3	118661	VCAN, CSPG2, WGN, WGN1, ERVR	Versican (chondroitin sulfate proteoglycan-2)	VCAN	1462	ENSG00000038427		Wagner syndrome 1, 143200 (3), Autosomal dominant	Vcan (MGI:102889)
chr5	83500000	98900000	5q14.3-q15		612881	PVNH5	Periventricular nodular heterotopia 5				deletion range 6.3-17Mb, common range 5.8Mb	Periventricular nodular heterotopia 5, 612881 (4)	
chr5	83638197	83721209	5q13-q14.1	5q14.3	115435	HAPLN1, CRTL1	Hyaluronan and proteoglycan link protein 1	HAPLN1	1404	ENSG00000145681			Hapln1 (MGI:1337006)
chr5	86617966	86620765	5q14	5q14.3	603774	COX7C	Cytochrome C oxidase, subunit VII C	COX7C	1350	ENSG00000127184	pseudogene on 13q14-q21		
chr5	87267844	87391925	5q13.3	5q14.3	139150	RASA1, GAP, CMAVM, PKWS	RAS p21 protein activator 1 (GTPase activating protein)	RASA1	5921	ENSG00000145715		Basal cell carcinoma, somatic, 605462 (3); Capillary malformation-arteriovenous malformation, 608354 (3), Autosomal dominant; Parkes Weber syndrome, 608355 (3), Autosomal dominant	Rasa1 (MGI:97860)
chr5	87311479	87413032	5q13.3-q14	5q14.3	601953	CCNH, CAK	Cyclin H	CCNH	902	ENSG00000134480			Ccnh (MGI:1913921)
chr5	88538265	88691040	5q14.3	5q14.3	616611	LINC00461, VISC	Long intergenic noncoding RNA 461	LINC00461	645323				
chr5	88666852	88666938	5q14.3	5q14.3	611187	MIR9-2, MIRN9-2	Micro RNA 9-2	MIR9-2	407047				
chr5	88718240	88904104	5q14	5q14.3	600662	MEF2C, C5DELq14.3, DEL5q14.3	MADS box transcription enhancer factor 2, polypeptide C (myocyte enhancer factor 2C)	MEF2C	4208	ENSG00000081189		Chromosome 5q14.3 deletion syndrome, 613443 (4), Autosomal dominant; Mental retardation, stereotypic movements, epilepsy, and/or cerebral malformations, 613443 (3), Autosomal dominant	Mef2c (MGI:99458)
chr5	90393334	90409785	5q14.3	5q14.3	602907	CETN3, CDC31	Centrin 3	CETN3	1070	ENSG00000153140			Cetn3 (MGI:1097706)
chr5	90473928	90514554	5p14.3	5q14.3	617456	POLR3G, RPC32, RPC7	Polymerase III, RNA, subunit G	POLR3G	10622	ENSG00000113356			Polr3g (MGI:1914736)
chr5	90558795	91164225	5q14.3	5q14.3	602851	ADGRV1, GPR98, MASS1, VLGR1, KIAA0686, FEB4, USH2C	Adhesion G protein-coupled receptor V1	ADGRV1	84059	ENSG00000164199	mutation identified in 1 FEB4 family	?Febrile seizures, familial, 4, 604352 (3), Autosomal dominant; Usher syndrome, type 2C, 605472 (3), Autosomal recessive; Usher syndrome, type 2C, GPR98/PDZD7 digenic, 605472 (3), Autosomal recessive	Adgrv1 (MGI:1274784)
chr5	91368631	91383372	5q14.3	5q14.3	612464	ARRDC3, TLIMP, KIAA1376	Arrestin domain-containing 3	ARRDC3	57561	ENSG00000113369			Arrdc3 (MGI:2145242)
chr5	93583336	93594612	5q14	5q15	132890	NR2F1, TFCOUP1, ERBAL3, EAR3, BBSOAS	Nuclear receptor subfamily 2, group F, member 1 (transcription factor COUP 1)	NR2F1	7025	ENSG00000175745		Bosch-Boonstra-Schaaf optic atrophy syndrome, 615722 (3), Autosomal dominant	Nr2f1 (MGI:1352451)
chr5	94150850	94618603	5q15	5q15	617266	KIAA0825	KIAA0825 gene	KIAA0825	285600	ENSG00000185261			2210408I21Rik (MGI:1919621)
chr5	94703689	95284574	5q15	5q15	616296	MCTP1	Multiple C2 domains-containing transmembrane protein 1	MCTP1	79772	ENSG00000175471			Mctp1 (MGI:1926021)
chr5	95463894	95555004	5q15	5q15	614589	TTC37, KIAA0372	Tetratricopeptide repeat domain 37	TTC37	9652	ENSG00000198677		Trichohepatoenteric syndrome 1, 222470 (3), Autosomal recessive	Ttc37 (MGI:2679923)
chr5	95555107	95605101	5q15	5q15	610011	ARSK	Arylsulfatase K	ARSK	153642	ENSG00000164291			Arsk (MGI:1924291)
chr5	95713521	95796366	5q14.3	5q15	607353	RHOBTB3, KIAA0878	Rho-related BTB domain-containing protein 3	RHOBTB3	22836	ENSG00000164292			Rhobtb3 (MGI:1920546)
chr5	95813848	95822872	5q14	5q15	600443	GLRX, GRX	Glutaredoxin (thioltransferase)	GLRX	2745	ENSG00000173221			Glrx (MGI:2135625)
chr5	95885097	95962070	5q15	5q15	601874	ELL2	Elongation factor, RNA polymerase II, 2	ELL2	22936	ENSG00000118985			Ell2 (MGI:2183438)
chr5	96390335	96433280	5q15-q21	5q15	162150	PCSK1, NEC1, PC1, PC3, BMIQ12	Proprotein convertase subtilisin/kexin type 1	PCSK1	5122	ENSG00000175426		Obesity with impaired prohormone processing, 600955 (3), Autosomal recessive; {Obesity, susceptibility to, BMIQ12}, 612362 (3)	Pcsk1 (MGI:97511)
chr5	96662036	96774682	5q15-q21	5q15	114090	CAST, PLACK	Calpastatin	CAST	831	ENSG00000153113		Peeling skin with leukonychia, acral punctate keratoses, cheilitis, and knuckle pads, 616295 (3), Autosomal recessive	Cast (MGI:1098236)
chr5	96760272	96935982	5q15	5q15	606832	ERAP1, ALAP, ARTS1, PILSAP, KIAA0525	Endoplasmic reticulum aminopeptidase 1	ERAP1	51752	ENSG00000164307			Erap1 (MGI:1933403)
chr5	96875938	96919715	5q15	5q15	609497	ERAP2, LRAP	Endoplasmic reticulum aminopeptidase 2	ERAP2	64167	ENSG00000164308			
chr5	96934858	97037512	5q14.2-q15	5q15	151300	LNPEP	Leucyl-cystinyl aminopeptidase	LNPEP	4012	ENSG00000113441			Lnpep (MGI:2387123)
chr5	97091869	97142815	5q15	5q15	610466	LIX1	Limb expression 1, mouse, homolog of	LIX1	167410	ENSG00000145721			Lix1 (MGI:1913893)
chr5	97160866	97183300	5q15	5q15	617754	RIOK2, RIO2	RIO kianse 2	RIOK2	55781	ENSG00000058729			Riok2 (MGI:1914295)
chr5	98768385	98796493	5q21.1	5q15	612687	RGMB, DRAGON	RGM domain family, member B	RGMB	285704	ENSG00000174136			Rgmb (MGI:1916049)
chr5	98855203	98929771	5q15-q21	5q15-q21	602118	CHD1, PILBOS	Chromodomain helicase DNA binding protein-1	CHD1	1105	ENSG00000153922		Pilarowski-Bjornsson syndrome, 617682 (3), Autosomal dominant	Chd1 (MGI:88393)
chr5	98900000	110200000	5q21		609570	MGR8	Migraine, susceptibility to, 8		100188790			{Migraine, susceptibility to, 8}, 609570 (2)	
chr5	100806934	100903284	5q21	5q21.1	602547	PST, PST1	Polysialyltransferase	ST8SIA4	7903	ENSG00000113532			St8sia4 (MGI:106018)
chr5	102233985	102296548	5q21.1	5q21.1	609013	SLCO4C1, OATP4C1	Solute carrier organic anion transporter family, member 4C1	SLCO4C1	353189	ENSG00000173930			Slco4c1 (MGI:2442784)
chr5	102371781	102502212	5q21.1	5q21.1	613365	SLCO6A1, GST	Solute carrier organic anion transporter family, member 6A1	SLCO6A1	133482	ENSG00000205359			Slco6b1 (MGI:1915104)
chr5	102754782	103031104	5q14-q21	5q21.1	170270	PAM	Peptidylglycine alpha-amidating monooxygenase	PAM	5066	ENSG00000145730			Pam (MGI:97475)
chr5	103120247	103204910	5q21.1	5q21.1	611648	HISPPD1, PPIP5K2, VIP2, KIAA0433	Histidine acid phosphatase domain-containing protein 1	PPIP5K2	23262	ENSG00000145725			Ppip5k2 (MGI:2142810)
chr5	103258701	103278659	5q21.1	5q21.1	616608	C5orf30	Chromosome 5 open reading frame 30	C5orf30	90355	ENSG00000181751			D1Ertd622e (MGI:1277184)
chr5	105100000	156300000	5q21.3-q33.2		608970	MDBS2	Macular dystrophy, butterfly-shaped pigmentary, 2				between D5S433 and D5S410	Macular dystrophy, butterfly-shaped pigmentary, 2, 608970 (2), Autosomal dominant	
chr5	107376888	107670894	5q21.3	5q21.3	601535	EFNA5, EPLG7, LERK7	Ephrin A5	EFNA5	1946	ENSG00000184349			Efna5 (MGI:107444)
chr5	107859032	108382097	5q21.3	5q21.3	609083	FBXL17, FBL17, FBX13, FBXO13	F-box and leucine-rich repeat protein 17	FBXL17	64839	ENSG00000145743			Fbxl17 (MGI:1354704)
chr5	108593483	108594002	5q13-q23	5q21.3	180463	RPS20A	Ribosomal protein S20A	RPS20P3	6225		?pseudogene		
chr5	108746084	109196840	5q21-q22	5q21.3	176942	FER, TYK3	fer (fps/fes related) tyrosine kinase	FER	2241	ENSG00000151422			Fer (MGI:105917)
chr5	109689365	109869624	5q21-q22	5q21.3	154582	MAN2A1, MANA2	Mannosidase, alpha, class 2A, member 1	MAN2A1	4124	ENSG00000112893			Man2a1 (MGI:104669)
chr5	110200000	115900000	5q22		613412	EOE2	Esophagitis, eosinophilic, 2		100499167		association with rs3806932	{Esophagitis, eosinophilic, 2}, 613412 (2), Multifactorial	
chr5	110200000	150400000	5q22.1-q32		610535	GLC1M	Glaucoma 1, open angle, M	GLC1M	777643		between D5S2051 and D5S2090	Glaucoma 1, open angle, M, 610535 (2), Autosomal dominant	
chr5	110738135	110765173	5q22.1	5q22.1	610826	SLC25A46, HMSN6B	Solute carrier family 25, member 46	SLC25A46	91137	ENSG00000164209		Neuropathy, hereditary motor and sensory, type VIB, 616505 (3), Autosomal recessive	Slc25a46 (MGI:1914703)
chr5	111070079	111078023	5q22.1	5q22.1	607003	TSLP	Thymic stromal lymphopoietin	TSLP	85480	ENSG00000145777			Tslp (MGI:1855696)
chr5	111092171	111130501	5q21.3-q22.1	5q22.1	609669	WDR36, TAWDRP, GLC1G	WD repeat-containing protein 36	WDR36	134430	ENSG00000134987		Glaucoma 1, open angle, G, 609887 (3)	Wdr36 (MGI:1917819)
chr5	111223652	111498502	5q21-q23	5q22.1	114080	CAMK4	Ca(2+)-calmodulin-dependent protein kinase type IV of brain	CAMK4	814	ENSG00000152495			Camk4 (MGI:88258)
chr5	111491421	111512596	5q22	5q22.1	607049	STARD4	Start domain-containing protein 4	STARD4	134429	ENSG00000164211			Stard4 (MGI:2156764)
chr5	111729302	111976930	5q22.1	5q22.1	607332	C5orf13, P311, PTZ17	P311 protein	NREP	9315	ENSG00000134986			Nrep (MGI:99444)
chr5	112141828	112419315	5q22	5q22.1-q22.2	612141	EPB41L4A, EPB41L4, NBL4	Erythrocyte membrane protein band 4.1-like 4A	EPB41L4A	64097	ENSG00000129595			Epb41l4a (MGI:103007)
chr5	112707504	112846238	5q22.2	5q22.2	611731	APC, GS, FPC, BTPS2	Adenomatous polyposis coli	APC	324	ENSG00000134982	150kb distal to MCC	Adenoma, periampullary, somatic (3); Adenomatous polyposis coli, 175100 (3), Autosomal dominant; Brain tumor-polyposis syndrome 2, 175100 (3), Autosomal dominant; Colorectal cancer, somatic, 114500 (3); Desmoid disease, hereditary, 135290 (3), Autosomal dominant; Gardner syndrome, 175100 (3), Autosomal dominant; Gastric cancer, somatic, 613659 (3); Hepatoblastoma, somatic, 114550 (3)	Apc (MGI:88039)
chr5	112861187	112893078	5q21-q22	5q22.2	182175	SRP19	Signal recognition particle 19kD	SRP19	6728	ENSG00000153037	within 100kb of APC		Srp19 (MGI:1913634)
chr5	112876383	112922333	5q22-q23	5q22.2	125265	REEP5, D5S346, DP1, C5orf18	Receptor expression-enhancing protein 5	REEP5	7905	ENSG00000129625			Reep5 (MGI:1270152)
chr5	112891615	112893096	5q22	5q22.2	601079	ZRSR1, U2AF1RS1	Zinc finger-, CCCH domain-, and RNA-binding motif-containing serine/arginine-rich protein 1	ZRSR2P1	7310				
chr5	112976701	113022194	5q21-q22	5q22.2	609844	DCP2	Decapping enzyme 2, S. cerevisiae, homolog of	DCP2	167227	ENSG00000172795			Dcp2 (MGI:1917890)
chr5	113022098	113488829	5q21	5q22.2	159350	MCC	Mutated in colorectal cancers	MCC	4163	ENSG00000171444		Colorectal cancer, somatic, 114500 (3)	Mcc (MGI:96930)
chr5	113432553	113435030	5q22.2	5q22.2	610709	TSSK1, STK22D	Testis-specific serine/threonine kinase 1	TSSK1B	83942	ENSG00000212122	pseudogene on chr22		Tssk1 (MGI:1347557)
chr5	113513661	113595286	5q22.2	5q22.2	616530	YTHDC2, CAHL	YTH domain-containing protein 2	YTHDC2	64848	ENSG00000047188			Ythdc2 (MGI:2448561)
chr5	114056005	114496499	5q21.2-q22.1	5q22.3	605879	KCNN2, SK2	Potassium channel, calcium-activated, intermediate/small conductance, subfamily N, member 2	KCNN2	3781	ENSG00000080709			
chr5	115124761	115180545	5q22.3	5q22.3	609317	TRIM36, RBCC728, ANPH	Tripartite motif-containing protein 36	TRIM36	55521	ENSG00000152503	mutation identified in 1 ANPH patient	?Anencephaly, 206500 (3), Autosomal recessive	Trim36 (MGI:106264)
chr5	115200246	115262886	5q22.3	5q22.3	602031	PGGT1B	Protein geranylgeranyltransferase type I, beta subunit	PGGT1B	5229	ENSG00000164219			Pggt1b (MGI:1917514)
chr5	115578495	115602478	5q23.1	5q22.3	608321	TIRP, TRAM	Toll/interleukin-1 receptor domain-containing protein	TICAM2	353376	ENSG00000243414			Ticam2 (MGI:3040056)
chr5	115804732	115816707	5q22-q23	5q22.3	603943	CDO1	Cysteine dioxygenase, type 1	CDO1	1036	ENSG00000129596			Cdo1 (MGI:105925)
chr5	115841605	115914080	5q23.1	5q22.3-q23.1	601507	AP3S1, CLAPS3	Adaptor-related protein complex 3, sigma 1 subunit	AP3S1	1176	ENSG00000177879	previously assigned to chr. 12 by FISH		Ap3s1 (MGI:1337062)
chr5	115900000	181538259	5q23-q35		181510	SCZD1	Schizophrenia susceptibility locus, chromosome 5-related	SCZD1	6377		max lod at D5S820	{Schizophrenia}, 181500 (2), Autosomal dominant	
chr5	115962453	116027601	5q23.1	5q23.1	610046	LVRN	Laeverin	LVRN	206338	ENSG00000172901			Lvrn (MGI:1921824)
chr5	116084975	116447434	5q23.1	5q23.1	616704	COMMD10	COMM domain-containing protein 10	COMMD10	51397	ENSG00000145781			Commd10 (MGI:1916706)
chr5	116443554	116574925	5q23.1	5q23.1	605885	SEMA6A	Semaphorin 6A	SEMA6A	57556	ENSG00000092421			Sema6a (MGI:1203727)
chr5	119071001	119249431	5q21-q22	5q23.1	605671	DMXL1	DMX-like 1	DMXL1	1657	ENSG00000172869			Dmxl1 (MGI:2443926)
chr5	119268691	119394603	5q23.1	5q23.1	612111	TNFAIP8, SCCS2	Tumor necrosis factor-alpha-induced protein 8	TNFAIP8	25816	ENSG00000145779			Tnfaip8 (MGI:2147191)
chr5	119452442	119542334	5q23.1	5q23.1	601860	HSD17B4, PRLTS1	Hydroxysteroid (17-beta) dehydrogenase 4	HSD17B4	3295	ENSG00000133835		D-bifunctional protein deficiency, 261515 (3), Autosomal recessive; Perrault syndrome 1, 233400 (3), Autosomal recessive	Hsd17b4 (MGI:105089)
chr5	120464221	120794586	5q23.1	5q23.1	615931	PRR16, LARGEN	Proline-rich protein 16	PRR16	51334	ENSG00000184838			Prr16 (MGI:1918623)
chr5	121851954	121852832	5q21.3	5q23.1	608847	FTMT	Ferritin, mitochondrial	FTMT	94033	ENSG00000181867			Ftmt (MGI:1914884)
chr5	121961960	122075623	5q23.1	5q23.1	610479	SRFBP1, P49	Serum response factor binding protein 1	SRFBP1	153443	ENSG00000151304			Srfbp1 (MGI:1914472)
chr5	122063194	122078500	5q23.3-q31.2	5q23.1	153455	LOX, AAT10	Lysyl oxidase	LOX	4015	ENSG00000113083		Aortic aneurysm, familial thoracic 10, 617168 (3), Autosomal dominant	Lox (MGI:96817)
chr5	122311353	122464218	5q23.1-q23.3	5q23.2	603779	SNCAIP	Synuclein-alpha-interacting protein (synphilin 1)	SNCAIP	9627	ENSG00000064692			Sncaip (MGI:1915097)
chr5	122774995	122834538	5q23	5q23.2	605929	SNX2	Sorting nexin 2	SNX2	6643	ENSG00000205302			Snx2 (MGI:1915054)
chr5	123023382	123036729	5q23.2	5q23.2	123842	PPIC	Peptidyl-prolyl isomerase C	PPIC	5480	ENSG00000168938			Ppic (MGI:97751)
chr5	123089102	123194265	5q23.2	5q23.2	616982	PRDM6, PRISM, PDA3	PR domain-containing protein 6	PRDM6	93166	ENSG00000061455		Patent ductus arteriosus 3, 617039 (3), Autosomal dominant	Prdm6 (MGI:2684938)
chr5	123344884	123423591	5q23.2	5q23.2	613446	CEP120, CCDC100, SRTD13, JBTS31	Centrosomal protein, 120kD	CEP120	153241	ENSG00000168944		Joubert syndrome 31, 617761 (3), Autosomal recessive; Short-rib thoracic dysplasia 13 with or without polydactyly, 616300 (3), Autosomal recessive	Cep120 (MGI:2147298)
chr5	123512098	123617044	5q23	5q23.2	604253	CSNK1G3	Casein kinase I, gamma-3	CSNK1G3	1456	ENSG00000151292			Csnk1g3 (MGI:1917675)
chr5	126541840	126595389	5q31	5q23.2	107323	ALDH7A1, ATQ1, EPD, PDE	Aldehyde dehydrogenase 7 family, member A1 (antiquitin 1)	ALDH7A1	501	ENSG00000164904		Epilepsy, pyridoxine-dependent, 266100 (3), Autosomal recessive	Aldh7a1 (MGI:108186)
chr5	126600914	126627251	5q23.2	5q23.2	604924	RNUXA, PHAX	RNA, U small nuclear, export adaptor	PHAX	51808	ENSG00000164902			Phax (MGI:1891839)
chr5	126776622	126837019	5q23.2	5q23.2	150340	LMNB1, ADLD	Lamin B1	LMNB1	4001	ENSG00000113368		Leukodystrophy, adult-onset, autosomal dominant, 169500 (3), Autosomal dominant	Lmnb1 (MGI:96795)
chr5	126867713	127032401	5q23.2	5q23.2	613333	MARCH3	Membrane-associated RING-CH finger protein 3	MARCH3	115123	ENSG00000173926			March3 (MGI:2443667)
chr5	127229518	127461221	5q23.2	5q23.2	612453	MEGF10, KIAA1780, EMARDD	Multiple epidermal growth factor-like domains 10	MEGF10	84466	ENSG00000145794		Myopathy, areflexia, respiratory distress, and dysphagia, early-onset, 614399 (3), Autosomal recessive; Myopathy, areflexia, respiratory distress, and dysphagia, early-onset, mild variant, 614399 (3), Autosomal recessive	Megf10 (MGI:2685177)
chr5	128083790	128189687	5q23.3	5q23.3	600840	SLC12A2, NKCC1	Solute carrier family 12 (sodium/potassium/chloride transporters), member 2	SLC12A2	6558	ENSG00000064651			Slc12a2 (MGI:101924)
chr5	128257908	128538041	5q23-q31	5q23.3	612570	FBN2, CCA, EOMD	Fibrillin-2	FBN2	2201	ENSG00000138829		Contractural arachnodactyly, congenital, 121050 (3), Autosomal dominant; Macular degeneration, early-onset, 616118 (3), Autosomal dominant	Fbn2 (MGI:95490)
chr5	129460264	129738682	5q31	5q23.3	607513	ADAMTS19	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 19	ADAMTS19	171019	ENSG00000145808			Adamts19 (MGI:2442875)
chr5	129903383	130186636	5q31	5q23.3	609963	CHSY3, CSS3	Chondroitin sulfate synthase 3	CHSY3	337876	ENSG00000198108			Chsy3 (MGI:1926173)
chr5	131159282	131165347	5q31.2	5q23.3	601314	HINT1, PRKCNH1, NMAN	Histidine triad nucleotide-binding protein 1 (protein kinase C inhibitor 1)	HINT1	3094	ENSG00000169567		Neuromyotonia and axonal neuropathy, autosomal recessive, 137200 (3), Autosomal recessive	Hint1 (MGI:1321133)
chr5	131170913	131205425	5q23.3	5q23.3-q31.1	615831	LYRM7, MZM1L, MC3DN8	LYR motif-containing protein 7	LYRM7	90624	ENSG00000186687		Mitochondrial complex III deficiency, nuclear type 8, 615838 (3), Autosomal recessive	Lyrm7 (MGI:1922780)
chr5	131200000	160500000	5q31-q33		608174	AITD2	Autoimmune thyroid disease, susceptibility to, 2		387579			{Autoimmune thyroid disease, susceptibility to, 2}, 608174 (2)	
chr5	131200000	160500000	5q31-q33		605845	ATOD6	Dermatitis, atopic, 6		114477		between D5S436 and D5S643	{Dermatitis, atopic, susceptibility to, 6}, 605845 (2)	
chr5	131200000	160500000	5q31-q33		609754	CELIAC2	Celiac disease, susceptibility to, 2	CELIAC2	317782			{Celiac disease, susceptibility to, 2}, 609754 (2)	
chr5	131200000	150400000	5q31.1-q32		607683	DFNA52, DFNA42	Deafness, autosomal dominant 52				max lod at D5S2017	Deafness, autosomal dominant 52, 607683 (2), Autosomal dominant	
chr5	131200000	145100000	5q31		615649	DFNA54	Deafness, autosomal dominant 54	DFNA54	448962		between D5S1972 and D5S410	Deafness, autosomal dominant 54, 615649 (2), Autosomal dominant	
chr5	131200000	160500000	5q31-q33		131400	EOS	Eosinophilia, familial		7908			Eosinophilia, familial, 131400 (2), Autosomal dominant	
chr5	131200000	145100000	5q31		606348	IBD5	Inflammatory bowel disease 5	IBD5	50941			{Inflammatory bowel disease 5}, 606348 (2)	
chr5	131200000	153300000	5q31.1-q33.1		605598	IDDM18	Insulin-dependent diabetes mellitus-18	IDDM18	57044		close to IL12B	{Diabetes mellitus, insulin-dependent, 18}, 605598 (2)	
chr5	131200000	136900000	5q31.1		147061	IGES	Immunoglobulin E concentration, serum	IGES	3478			{?Allergy and asthma susceptibility}, 147061 (2)	
chr5	131200000	145100000	5q31		604966	PCDHA@	Protocadherin-alpha gene cluster						
chr5	131200000	145100000	5q31		604967	PCDHB@	Protocadherin-beta gene cluster						
chr5	131200000	145100000	5q31		604968	PCDHG	Protocadherin-gamma gene cluster						
chr5	131200000	145100000	5q31		606263	PDB4	Paget disease of bone 4	PDB4	94003			Paget disease of bone 4, 606263 (2), Autosomal dominant	
chr5	131200000	160500000	5q31-q33		248310	PFBI	Plasmodium falciparum blood infection levels		7910			{Malaria, intensity of infection}, 248310 (2), Autosomal recessive	
chr5	131200000	153300000	5q31.1-q33.1		612599	PSORS11	Psoriasis susceptibility 11		100271719		associated with rs10045431	{Psoriasis susceptibility 11}, 612599 (2)	
chr5	131200000	145100000	5q31		615197	RLS8	Restless legs syndrome, susceptibility to, 8		101448072			{Restless legs syndrome 8}, 615197 (2)	
chr5	131200000	160500000	5q31-q33		181460	SM1	Schistosoma mansoni infection, susceptibility/resistance to		7911			{Schistosoma mansoni infection, susceptibility/resistance to}, 181460 (2), Autosomal dominant	
chr5	131423920	131635235	5q31.1	5q31.1	610499	RAPGEF6, RAGEF2, PDZGEF2	RAP guanine nucleotide exchange factor 6	RAPGEF6	51735	ENSG00000158987			Rapgef6 (MGI:2384761)
chr5	131641712	131797062	5q23.3	5q31.1	610594	FNIP1, KIAA1961	Folliculin-interacting protein 1	FNIP1	96459	ENSG00000217128			Fnip1 (MGI:2444668)
chr5	131806989	131945697	5q31.1	5q31.1	616232	MEIKIN	Meiotic kinetochore factor	MEIKIN	728637	ENSG00000239642			Meikin (MGI:1922097)
chr5	131949972	132012067	5q31	5q31.1	604443	ACSL6, FACL6, ACS2	Acyl-CoA synthetase long-chain family member 6	ACSL6	23305	ENSG00000164398		Myelodysplastic syndrome (3); Myelogenous leukemia, acute (3)	Acsl6 (MGI:894291)
chr5	132060653	132063202	5q31.1	5q31.1	147740	IL3	Interleukin-3	IL3	3562	ENSG00000164399	9kb from CSF2; order: cen-5'IL3-5'CF2-qter		
chr5	132073791	132076169	5q31.1	5q31.1	138960	CSF2, GMCSF	Colony-stimulating factor-2 (granulocyte-macrophage)	CSF2	1437	ENSG00000164400	order: cen-CSF2-CSF1-FMS-qter		Csf2 (MGI:1339752)
chr5	132190146	132227862	5q31	5q31.1	600608	P4HA2, MYP25	Procollagen-proline, 2-oxoglutarate-4-dioxygenase, alpha subunit, isoform 2	P4HA2	8974	ENSG00000072682		Myopia 25, autosomal dominant, 617238 (3), Autosomal dominant	P4ha2 (MGI:894286)
chr5	132257657	132273453	5q31.1	5q31.1	603422	RIL	LIM domain protein ril	PDLIM4	8572	ENSG00000131435		{Osteoporosis, susceptibility to}, 166710 (3), Autosomal dominant	Pdlim4 (MGI:1353470)
chr5	132294383	132344205	5q31	5q31.1	604190	SLC22A4, OCTN1	Solute carrier family 22 (organic cation transporter), member 4	SLC22A4	6583	ENSG00000197208		{Rheumatoid arthritis, susceptibility to}, 180300 (3)	Slc22a4 (MGI:1353479)
chr5	132369703	132395613	5q31.1	5q31.1	603377	SLC22A5, OCTN2, CDSP, SCD	Solute carrier, family 22 (organic cation transporter), member 5	SLC22A5	6584	ENSG00000197375		Carnitine deficiency, systemic primary, 212140 (3), Autosomal recessive	Slc22a5 (MGI:1329012)
chr5	132481608	132490788	5q31.1	5q31.1	147575	IRF1, MAR	Interferon regulatory factor-1	IRF1	3659	ENSG00000125347		Gastric cancer, somatic, 613659 (3); Myelodysplastic syndrome, preleukemic (3); Myelogenous leukemia, acute (3); Nonsmall cell lung cancer, somatic, 211980 (3)	Irf1 (MGI:96590)
chr5	132539193	132556863	5q31.1	5q31.1	147850	IL5	Interleukin-5	IL5	3567	ENSG00000113525	< 310kb from IL4		Il5 (MGI:96557)
chr5	132556923	132644620	5q31	5q31.1	604040	RAD50, NBSLD	RAD50, S. cerevisiae, homolog of	RAD50	10111	ENSG00000113522		Nijmegen breakage syndrome-like disorder, 613078 (3)	Rad50 (MGI:109292)
chr5	132656523	132661108	5q31	5q31.1	147683	IL13, ALRH, BHR1	Interleukin-13	IL13	3596	ENSG00000169194		{Allergic rhinitis, susceptibility to}, 607154 (3); {Asthma, susceptibility to}, 600807 (3), Autosomal dominant	Il13 (MGI:96541)
chr5	132673985	132682677	5q31.1	5q31.1	147780	IL4	Interleukin-4	IL4	3565	ENSG00000113520			Il4 (MGI:96556)
chr5	132688807	132737577	5q31	5q31.1	604683	KIF3A	Kinesin family member 3A	KIF3A	11127	ENSG00000131437			Kif3a (MGI:107689)
chr5	132750816	132778215	5q31-q33	5q31.1	608418	SEPT8, KIAA0202	Septin 8	SEPT8	23176	ENSG00000164402			Sept8 (MGI:894310)
chr5	132822140	132831626	5q31.1	5q31.1	611179	SHROOM1, APXL2, KIAA1960	SHROOM family member 1	SHROOM1	134549	ENSG00000164403			Shroom1 (MGI:1919024)
chr5	132861180	132866883	5q31.1	5q31.1	601918	GDF9	Growth/differentiation factor 9	GDF9	2661	ENSG00000164404			Gdf9 (MGI:95692)
chr5	132866626	132868843	5q31.1	5q31.1	612080	UQCRQ, QPC, MC3DN4	Ubiquinol-cytochrome c reductase, complex III subunit VII, 9.5kD	UQCRQ	27089	ENSG00000164405		Mitochondrial complex III deficiency, nuclear type 4, 615159 (3), Autosomal recessive	Uqcrq (MGI:107807)
chr5	132873665	132874889	5q31.1	5q31.1	611373	LEAP2	Liver-expressed antimicrobial peptide 2	LEAP2	116842	ENSG00000164406			Leap2 (MGI:2672795)
chr5	132875378	132963661	5q31	5q31.1	604417	AFF4, AF5Q31, CHOPS	AF4/FMR2 family, member 4	AFF4	27125	ENSG00000072364		CHOPS syndrome, 616368 (3), Autosomal dominant	Aff4 (MGI:2136171)
chr5	133051969	133105016	5q31.1-q31.2	5q31.1	601113	HSPA4	Heat-shock 70kD protein-4	HSPA4	3308	ENSG00000170606			Hspa4 (MGI:1342292)
chr5	133913676	133917268	5q31.1	5q31.1	616333	WSPAR, lncTCF7	WNT signaling pathway activating noncoding RNA	WSPAR	105664404				
chr5	133971874	134070986	5q31	5q31.1	604492	VDAC1	Voltage-dependent anion channel 1	VDAC1	7416	ENSG00000213585			Vdac1 (MGI:106919)
chr5	134114697	134148228	5q31.1	5q31.1	189908	TCF7	Transcription factor-7, T-cell specific	TCF7	6932	ENSG00000081059	originally called TCF-1		
chr5	134156390	134177032	5q31	5q31.1	601434	SKP1, SKP1A, TCEB1L, OCP2	S-phase kinase-associated protein 1 (p19A)	SKP1	6500	ENSG00000113558	pseudogene on chr.7		Skp1a (MGI:103575)
chr5	134196251	134226258	5q23-q31	5q31.1	176915	PPP2CA	Protein phosphatase-2 (formerly 2A), catalytic subunit, alpha isoform	PPP2CA	5515	ENSG00000113575			Ppp2ca (MGI:1321159)
chr5	134236119	134372379	5q31	5q31.1	608459	CDKL3, NKIAMRE	Cyclin-dependent kinase-like 3	CDKL3	51265	ENSG00000006837			Cdkl3 (MGI:2388268)
chr5	134371175	134392107	5q23-q31	5q31.1	179095	UBE2B, RAD6B	Ubiquitin-conjugating enzyme E2B (RAD6 homolog)	UBE2B	7320	ENSG00000119048		?Male infertility (1)	Ube2b (MGI:102944)
chr5	134524152	134583229	5q31.1	5q31.1	610515	PHF15, JADE2, KIAA0239	PHD finger protein 15	JADE2	23338	ENSG00000043143			Jade2 (MGI:1924151)
chr5	134601148	134632842	5q31.1	5q31.1	607690	SAR1B, CMRD, SARA2, ANDD	Sar1a, S. cerevisiae, homolog 2	SAR1B	51128	ENSG00000152700		Chylomicron retention disease, 246700 (3), Autosomal recessive	Sar1b (MGI:1913647)
chr5	134647756	134727910	5q31.1	5q31.1	607183	SEC24A	Sec24-related gene family, member A	SEC24A	10802	ENSG00000113615			Sec24a (MGI:1924621)
chr5	134738479	134752159	5q23	5q31.1	601118	CAMLG	Calcium-modulating cyclophilin ligand	CAMLG	819	ENSG00000164615			Caml (MGI:104728)
chr5	134758733	134831137	5q31.1	5q31.1	617848	DDX46, PRP5, KIAA0801	DEAD box helicase 46	DDX46	9879	ENSG00000145833			Ddx46 (MGI:1920895)
chr5	134873769	134901632	5q31.1	5q31.1	617778	TXNDC15, C5orf14, BUG	Thioredoxin domain-containing protein 15	TXNDC15	79770	ENSG00000113621			Txndc15 (MGI:1916922)
chr5	134905119	134962645	5q31.2	5q31.1	609836	PCBD2, DCOH2, DCOHM	Pterin-4-alpha-carbinolamine dehydratase 2	PCBD2	84105	ENSG00000132570			Pcbd2 (MGI:1919812)
chr5	134967905	135011706	5q31.1	5q31.1	609120	CATSPER3, CACRC	Cation channel, sperm-associated, 3	CATSPER3	347732	ENSG00000152705			Catsper3 (MGI:1924106)
chr5	135027733	135034273	5q31	5q31.1	602149	PITX1, PTX1, BFT, POTX, CCF, LBNBG	Paired-like homeodomain transcription factor-1	PITX1	5307	ENSG00000069011		Clubfoot, congenital, with or without deficiency of long bones and/or mirror-image polydactyly, 119800 (3), Autosomal dominant; Liebenberg syndrome, 186550 (4), Autosomal dominant	Pitx1 (MGI:107374)
chr5	135334380	135401997	5q31.3-q32	5q31.1	610054	H2AFY, MH2A1	H2A histone family, member Y	H2AFY	9555	ENSG00000113648			H2afy (MGI:1349392)
chr5	135444213	135447347	5q31.1	5q31.1	609710	C5orf20, DCNP1	Dendritic cell nuclear protein 1	DCANP1	140947	ENSG00000251380			
chr5	135448867	135452398	5q31.2	5q31.1	612663	TIFAB	TRAF-interacting protein with forkhead-associated domain, family member B	TIFAB	497189	ENSG00000255833			Tifab (MGI:2385852)
chr5	135534281	135535948	5q23-q31	5q31.1	601726	NEUROG1, NEUROD3	Neurogenin 1	NEUROG1	4762	ENSG00000181965			Neurog1 (MGI:107754)
chr5	135570678	135579278	5q31	5q31.1	604186	CXCL14, SCYB14, BRAK	Chemokine, C-X-C motif, ligand 14	CXCL14	9547	ENSG00000145824			Cxcl14 (MGI:1888514)
chr5	135579164	135888636	5q31.1	5q31.1	616150	SLC25A48	Solute carrier family 25, member 48	SLC25A48	153328	ENSG00000145832			
chr5	135892245	135895826	5q31.1	5q31.1	146931	IL9	Interleukin-9	IL9	3578	ENSG00000145839			Il9 (MGI:96563)
chr5	135930296	135941995	5q31.1	5q31.1	609087	FBXL21, FBL21, FBXL3B, FBL3B	F-box and leucine-rich repeat protein 21	FBXL21	26223				Fbxl21 (MGI:2442921)
chr5	135946910	135955033	5q31.1-q32	5q31.1	602882	LECT2	Leukocyte cell-derived chemotaxin 2	LECT2	3950	ENSG00000145826			Lect2 (MGI:1278342)
chr5	136028894	136063817	5q31	5q31.1	601692	TGFBI, CSD2, CDGG1, CSD, BIGH3, CDG2, EBMD	Transforming growth factor, beta-induced, 68kD	TGFBI	7045	ENSG00000120708		Corneal dystrophy, Avellino type, 607541 (3), Autosomal dominant; Corneal dystrophy, Groenouw type I, 121900 (3), Autosomal dominant; Corneal dystrophy, Reis-Bucklers type, 608470 (3); Corneal dystrophy, Thiel-Behnke type, 602082 (3), Autosomal dominant; Corneal dystrophy, epithelial basement membrane, 121820 (3), Autosomal dominant; Corneal dystrophy, lattice type I, 122200 (3), Autosomal dominant; Corneal dystrophy, lattice type IIIA, 608471 (3), Autosomal dominant	Tgfbi (MGI:99959)
chr5	136080490	136080597	5q31	5q31.1	614938	VTRNA2-1, NC886, CBL3, VTRNA2	Vault RNA 2-1	VTRNA2-1	100126299				
chr5	136132844	136182733	5q31	5q31.1	603110	MADH5, SMAD5	Mothers against decapentaplegic, Drosophila, homolog of, 5	SMAD5	4090	ENSG00000113658			Smad5 (MGI:1328787)
chr5	136975297	137499328	5q31	5q31.2	602264	SPOCK	Testican	SPOCK1	6695	ENSG00000152377	previously mapped to chr.21		Spock1 (MGI:105371)
chr5	137617499	137736089	5q31	5q31.2	605775	KLHL3, PHA2D	Kelch-like 3	KLHL3	26249	ENSG00000146021		Pseudohypoaldosteronism, type IID, 614495 (3), Autosomal recessive, Autosomal dominant	Klhl3 (MGI:2445185)
chr5	137751383	137754349	5q31	5q31.2	609409	HNRPA0	Heterogeneous nuclear ribonucleoprotein A0	HNRNPA0	10949	ENSG00000177733			Hnrnpa0 (MGI:1924384)
chr5	137801192	137810750	5q31	5q31.2	601770	NPY6R, PP2	Neuropeptide Y receptor Y6	NPY6R	4888		?nonfunctional pseudogene		
chr5	137867281	137887850	5q31	5q31.2	604103	MYOT, TTOD, MFM3	Myotilin (titin immunoglobulin domain protein)	MYOT	9499	ENSG00000120729		Muscular dystrophy, limb-girdle, type 1A, 159000 (3), Autosomal dominant; Myopathy, myofibrillar, 3, 609200 (3), Autosomal dominant; Myopathy, spheroid body, 182920 (3), Autosomal dominant	Myot (MGI:1889800)
chr5	137889410	137942746	5q31	5q31.2	604669	PKD2L2	Polycystin 2-like 2	PKD2L2	27039	ENSG00000078795			Pkd2l2 (MGI:1858231)
chr5	137937908	138051960	5q31.2	5q31.2	609371	FAM13B, C5orf5	Family with sequence similarity 13, member B	FAM13B	51306	ENSG00000031003			Fam13b (MGI:2447834)
chr5	138077366	138092899	5q31.2	5q31.2	606360	WNT8A	Wingless-type MMTV integration site family, member 8A	WNT8A	7478	ENSG00000061492			Wnt8a (MGI:107924)
chr5	138115171	138139470	5q23-q31	5q31.2	603575	NME5, NM23H5	Nonmetastatic cells 5, protein expressed in (nonmetastatic protein 23, homolog 5)	NME5	8382	ENSG00000112981			Nme5 (MGI:1922783)
chr5	138139765	138178668	5q31.2	5q31.2	602848	BRD8, SMAP	Bromodomain-containing protein 8	BRD8	10902	ENSG00000112983			Brd8 (MGI:1925906)
chr5	138178727	138187714	5q31	5q31.2	605664	KIF20A, RAB6KIFL	Kinesin family member 20A	KIF20A	10112	ENSG00000112984			Kif20a (MGI:1201682)
chr5	138187647	138213342	5q31.1	5q31.2	603462	CDC23, APC8	Cell division cycle 23 (anaphase-promoting complex 8)	CDC23	8697	ENSG00000094880			Cdc23 (MGI:1098815)
chr5	138252379	138274563	5q31	5q31.2	605710	GFRA3	GDNF family receptor alpha-3	GFRA3	2676	ENSG00000146013			Gfra3 (MGI:1201403)
chr5	138285264	138338354	5q31	5q31.2	157680	CDC25C	Cell division cycle 25C	CDC25C	995	ENSG00000158402			Cdc25c (MGI:88350)
chr5	138337534	138349728	5q31.2	5q31.2	609372	FAM53C, C5orf6	Family with sequence similarity 53, member C	FAM53C	51307	ENSG00000120709			Fam53c (MGI:1913556)
chr5	138352595	138437026	5q31	5q31.2	609373	KDM3B, C5orf7, KIAA1082, JMJD1B	Lysine-specific demethylase 3B	KDM3B	51780	ENSG00000120733			Kdm3b (MGI:1923356)
chr5	138439000	138446968	5q31	5q31.2	609347	REEP2, C5orf19, SPG72	Receptor expression-enhancing protein 2	REEP2	51308	ENSG00000132563	mutation identified in 1 family each SPG72 AR and AD	?Spastic paraplegia 72, autosomal dominant, 615625 (3), Autosomal recessive, Autosomal dominant; ?Spastic paraplegia 72, autosomal recessive, 615625 (3), Autosomal recessive, Autosomal dominant	Reep2 (MGI:2385070)
chr5	138465491	138469314	5q31.1	5q31.2	128990	EGR1	Early growth response-1	EGR1	1958	ENSG00000120738			Egr1 (MGI:95295)
chr5	138506092	138543299	5q31.1	5q31.2	600285	ETF1, RF1, ERF1	Eukaryotic translation termination factor-1	ETF1	2107	ENSG00000120705			Etf1 (MGI:2385071)
chr5	138554881	138575628	5q31.2	5q31.2	600548	HSPA9, HSPA9B, MOT2, GRP75, EVPLS, SIDBA4	Heat-shock 70kD protein-9 (mortalin)	HSPA9	3313	ENSG00000113013		Anemia, sideroblastic, 4, 182170 (3), Autosomal dominant; Even-plus syndrome, 616854 (3), Autosomal recessive	Hspa9 (MGI:96245)
chr5	138753385	138935033	5q31	5q31.2	116805	CTNNA1, MDPT2	Catenin (cadherin-associated protein), alpha 1, 102kD	CTNNA1	1495	ENSG00000044115		Macular dystrophy, patterned, 2, 608970 (3), Autosomal dominant	Ctnna1 (MGI:88274)
chr5	138869389	138875367	5q31.2	5q31.2	610868	LRRTM2, KIAA0416	Leucine-rich repeat transmembrane protein 2	LRRTM2	26045	ENSG00000146006			Lrrtm2 (MGI:2389174)
chr5	138946719	139198375	5q31	5q31.2	608005	SIL1, BAP, MSS	Sil1, S. cerevisiae, homolog of	SIL1	64374	ENSG00000120725		Marinesco-Sjogren syndrome, 248800 (3), Autosomal recessive	Sil1 (MGI:1932040)
chr5	139273751	139331676	5q31.2	5q31.2	164015	MATR3, MPD2, ALS21	Matrin 3	MATR3	9782	ENSG00000015479		Amyotrophic lateral sclerosis 21, 606070 (3), Autosomal dominant	Matr3 (MGI:1298379)
chr5	139341831	139369719	5q31.2	5q31.2	605604	PAIP2, PAIP2A	Polyadenylate-binding protein-interacting protein 2	PAIP2	51247	ENSG00000120727			Paip2 (MGI:1915119)
chr5	139367195	139384552	5q31.2-q31.3	5q31.2	603790	SLC23A1, SVCT1	Solute carrier family 23 (nucleobase transporter), member 1 (sodium-dependent vitamin C transporter 1)	SLC23A1	9963	ENSG00000170482	opposite orientation to MATR3		Slc23a1 (MGI:1341903)
chr5	139387567	139389915	5q31.2	5q31.2	609447	MZB1, PACAP, MGC29506	Marginal zone B and B1 cell-specific protein	MZB1	51237	ENSG00000170476			Mzb1 (MGI:1917066)
chr5	139448553	139462742	5q31	5q31.2	615736	ECSCR, ECSM2, ARIA	Endothelial cell surface-expressed chemotaxis and apoptosis regulator	ECSCR	641700	ENSG00000249751			Ecscr (MGI:1915795)
chr5	139475527	139482789	5q31.2	5q31.2	612374	TMEM173, STING, MPYS, SAVI	Transmembrane protein 173	TMEM173	340061	ENSG00000184584		STING-associated vasculopathy, infantile-onset, 615934 (3), Autosomal dominant	Tmem173 (MGI:1919762)
chr5	139561165	139628433	5q31.2	5q31.2	602962	UBE2D2, UBCH5B, UBC4	Ubiquitin-conjugating enzyme E2D 2	UBE2D2	7322	ENSG00000131508			Ube2d2a (MGI:1930715)
chr5	139647298	139683884	5q31.3	5q31.2	612752	CXXC5	CXXC finger protein 5	CXXC5	51523	ENSG00000171604			Cxxc5 (MGI:1914643)
chr5	139846778	140043674	5q23-q33	5q31.2	603818	NRG2	Neuregulin 2	NRG2	9542	ENSG00000158458			Nrg2 (MGI:1098246)
chr5	140100000	150400000	5q31.3-q32		601101	HHT3, ORW3	Hereditary hemorrhagic telangiectasia, type 3		780903			Telangiectasia, hereditary hemorrhagic, type 3, 601101 (2)	
chr5	140114122	140119415	5q31	5q31.3	600473	PURA, PUR1, MRD31	Purine-rich element binding protein A	PURA	5813	ENSG00000185129		Mental retardation, autosomal dominant 31, 616158 (3), Autosomal dominant	Pura (MGI:103079)
chr5	140245049	140303103	5q31	5q31.3	604897	PFDN1	Prefoldin 1	PFDN1	5201	ENSG00000113068			Pfdn1 (MGI:1914449)
chr5	140332842	140346602	5q23	5q31.3	126150	HBEGF, DTR, DTSF, HEGFL	Heparin-binding EGF-like growth factor (diphtheria toxin receptor)	HBEGF	1839	ENSG00000113070		{Diphtheria, susceptibility to} (1)	Hbegf (MGI:96070)
chr5	140401813	140539855	5q31.3	5q31.3	610500	ANKHD1, MASK, KIAA1085, VBARP	Ankyrin repeat and KH domain-containing protein 1	ANKHD1	54882	ENSG00000131503			Ankhd1 (MGI:1921733)
chr5	140550066	140558092	5q31.3	5q31.3	603819	SRA1	Steroid receptor RNA activator 1	SRA1	10011	ENSG00000213523			Sra1 (MGI:1344414)
chr5	140558267	140564603	5q31	5q31.3	602711	APBB3, FE65L2	Amyloid beta (A4) precursor protein-binding, family B, member 3	APBB3	10307	ENSG00000113108			Apbb3 (MGI:108404)
chr5	140631727	140633700	5q31.1	5q31.3	158120	CD14	CD14 antigen	CD14	929	ENSG00000170458			Cd14 (MGI:88318)
chr5	140645362	140647784	5q31.2	5q31.3	602137	NDUFA2	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 2 (8kD, B8)	NDUFA2	4695	ENSG00000131495		Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Ndufa2 (MGI:1343103)
chr5	140647798	140662479	5q31.3	5q31.3	600549	IK, RED	IK cytokine, downregulator of HLA II	IK	3550	ENSG00000113141			Ik (MGI:1345142)
chr5	140670795	140673585	5q31.3	5q31.3	609385	DND1	Dead end, zebrafish, homolog of, 1	DND1	373863	ENSG00000256453			Dnd1 (MGI:2447763)
chr5	140673903	140691726	5q31.3	5q31.3	142810	HARS, USH3B, CMT2W	Histidyl-tRNA synthetase	HARS	3035	ENSG00000170445		Charcot-Marie-Tooth disease, axonal, type 2W, 616625 (3), Autosomal dominant; Usher syndrome type 3B, 614504 (3), Autosomal recessive	Hars (MGI:108087)
chr5	140691425	140699317	5q31.3	5q31.3	600783	HARS2, HARSL, HARSR, HO3, PRLTS2	Histidyl-tRNA synthetase 2	HARS2	23438	ENSG00000112855	mutation identified in 1 PRLTS2 family	?Perrault syndrome 2, 614926 (3), Autosomal recessive	Hars2 (MGI:1918041)
chr5	140711275	140711372	5q31	5q31.3	612695	VTRNA1-1, HVG1, VAULTRC1	Vault RNA 1-1	VTRNA1-1	56664				
chr5	140718925	140719012	5q31	5q31.3	612696	VTRNA1-2, HVG2, VAULTRC2	Vault RNA 1-2	VTRNA1-2	56663				
chr5	140726158	140726245	5q31	5q31.3	612697	VTRNA1-3, HVG3, VAULTRC3	Vault RNA 1-3	VTRNA1-3	56662				
chr5	140786135	141012343	5q31	5q31.3	606307	PCDHA1	Protocadherin-alpha 1	PCDHA1	56147	ENSG00000204970			Pcdha1 (MGI:2150982)
chr5	140794858	141012343	5q31	5q31.3	606308	PCDHA2	Protocadherin-alpha 2	PCDHA2	56146	ENSG00000204969			Pcdha2 (MGI:2681880)
chr5	140801197	141012343	5q31	5q31.3	606309	PCDHA3	Protocadherin-alpha 3	PCDHA3	56145	ENSG00000255408			Pcdha3 (MGI:2447313)
chr5	140807073	141012343	5q31	5q31.3	606310	PCDHA4	Protocadherin-alpha 4	PCDHA4	56144	ENSG00000204967			Pcdha4 (MGI:1298406)
chr5	140821775	141012343	5q31	5q31.3	606311	PCDHA5	Protocadherin-alpha 5	PCDHA5	56143	ENSG00000204965			Pcdha5 (MGI:1298371)
chr5	140827921	141012343	5q31	5q31.3	606312	PCDHA6	Protocadherin-alpha 6	PCDHA6	56142	ENSG00000081842			Pcdha6 (MGI:1298367)
chr5	140834383	141012343	5q31	5q31.3	606313	PCDHA7	Protocadherin-alpha 7	PCDHA7	56141	ENSG00000204963			Pcdha7 (MGI:1298369)
chr5	140841321	141012343	5q31	5q31.3	606314	PCDHA8	Protocadherin-alpha 8	PCDHA8	56140	ENSG00000204962			
chr5	140847771	141012343	5q31	5q31.3	606315	PCDHA9	Protocadherin-alpha 9	PCDHA9	9752	ENSG00000204961			Pcdha8 (MGI:2681879)
chr5	140855882	141012343	5q31	5q31.3	606316	PCDHA10	Protocadherin-alpha 10	PCDHA10	56139	ENSG00000250120			Pcdha9 (MGI:2447322)
chr5	140867512	141012343	5q31	5q31.3	606317	PCDHA11	Protocadherin-alpha 11	PCDHA11	56138	ENSG00000249158			Pcdha11 (MGI:1298372)
chr5	140875301	141012343	5q31	5q31.3	606318	PCDHA12	Protocadherin-alpha 12	PCDHA12	56137	ENSG00000251664			Pcdha10 (MGI:1298408)
chr5	140882268	141012343	5q31	5q31.3	606319	PCDHA13	Protocadherin-alpha 13	PCDHA13	56136	ENSG00000239389			Pcdha12 (MGI:1298370)
chr5	140926716	141012343	5q31	5q31.3	606320	PCDHAC1	Protocadherin-alpha, subfamily C, member 1	PCDHAC1	56135	ENSG00000248383			Pcdhac1 (MGI:1891442)
chr5	140966161	141012343	5q31	5q31.3	606321	PCDHAC2	Protocadherin-alpha, subfamily C, member 2	PCDHAC2	56134	ENSG00000243232			Pcdhac2 (MGI:1891443)
chr5	141051375	141053961	5q31	5q31.3	606327	PCDHB1	Protocadherin-beta 1	PCDHB1	29930	ENSG00000171815			Pcdhb1 (MGI:2136730)
chr5	141094606	141097379	5q31	5q31.3	606328	PCDHB2	Protocadherin-beta 2	PCDHB2	56133	ENSG00000112852			Pcdhb2 (MGI:2136735)
chr5	141100241	141103826	5q31	5q31.3	606329	PCDHB3	Protocadherin-beta 3	PCDHB3	56132	ENSG00000113205			Pcdhb3 (MGI:2136737)
chr5	141121749	141125622	5q31	5q31.3	606330	PCDHB4	Protocadherin-beta 4	PCDHB4	56131	ENSG00000081818			Pcdhb5 (MGI:2136739)
chr5	141135205	141138126	5q31	5q31.3	606331	PCDHB5	Protocadherin-beta 5	PCDHB5	26167	ENSG00000113209			Pcdhb10 (MGI:2136745)
chr5	141150021	141153286	5q31	5q31.3	606332	PCDHB6	Protocadherin-beta 6	PCDHB6	56130	ENSG00000113211			Pcdhb13 (MGI:2136748)
chr5	141172620	141176375	5q31	5q31.3	606333	PCDHB7	Protocadherin-beta 7	PCDHB7	56129	ENSG00000113212			Pcdhb15 (MGI:2136750)
chr5	141177789	141180499	5q31	5q31.3	606334	PCDHB8	Protocadherin-beta 8	PCDHB8	56128	ENSG00000120322			Pcdhb16 (MGI:2136752)
chr5	141181689	141186220	5q31	5q31.3	606345	PCDHB16	Protocadherin-beta 16	PCDHB16	57717	ENSG00000272674			Pcdhb17 (MGI:2136754)
chr5	141187126	141191537	5q31	5q31.3	606335	PCDHB9	Protocadherin-beta 9	PCDHB9	56127	ENSG00000177839			
chr5	141192378	141195639	5q31	5q31.3	606336	PCHB10	Protocadherin-beta 10	PCDHB10	56126	ENSG00000120324			
chr5	141199774	141203044	5q31	5q31.3	606337	PCDHB11	Protocadherin-beta 11	PCDHB11	56125	ENSG00000197479			Pcdhb21 (MGI:2136759)
chr5	141208718	141212125	5q31	5q31.3	606338	PCDHB12	Protocadherin-beta 12	PCDHB12	56124	ENSG00000120328			Pcdhb19 (MGI:2136757)
chr5	141213918	141217420	5q31	5q31.3	606339	PCDHB13	Protocadherin-beta 13	PCDHB13	56123	ENSG00000187372			
chr5	141222325	141226287	5q31	5q31.3	606340	PCDHB14	Protocadherin-beta 14	PCDHB14	56122	ENSG00000120327			Pcdhb20 (MGI:2136758)
chr5	141245348	141248233	5q31	5q31.3	606341	PCDHB15	Protocadherin-beta 15	PCDHB15	56121	ENSG00000113248			Pcdhb22 (MGI:2136760)
chr5	141302628	141304062	5q31	5q31.3	608157	SLC25A2, ORNT2	Solute carrier family 25 (mitochondrial carrier, ornithine transporter), member 2	SLC25A2	83884	ENSG00000120329			
chr5	141318489	141320783	5q31	5q31.3	600573	TAF7, TAF2F, TAFII55	TAF7 RNA polymerase II, TATA box-binding protein-associated factor, 55kD	TAF7	6879	ENSG00000178913			Taf7 (MGI:1346348)
chr5	141330684	141512978	5q31	5q31.3	606288	PCDHGA1	Protocadherin-gamma, subfamily A, member 1	PCDHGA1	56114	ENSG00000204956			Pcdhga1 (MGI:1935212)
chr5	141338759	141512978	5q31	5q31.3	606289	PCDHGA2	Protocadherin-gamma, subfamily A, member 2	PCDHGA2	56113	ENSG00000081853			Pcdhga2 (MGI:1935214)
chr5	141344033	141512978	5q31	5q31.3	606290	PCDHGA3	Protocadherin-gamma, subfamily A, member 3	PCDHGA3	56112	ENSG00000254245			Pcdhga3 (MGI:1935215)
chr5	141350260	141512978	5q31	5q31.3	606299	PCDHGB1	Protocadherin-gamma, subfamily B, member 1	PCDHGB1	56104	ENSG00000254221			Pcdhgb1 (MGI:1935169)
chr5	141355024	141512978	5q31	5q31.3	606291	PCDHGA4	Protocadherin-gamma, subfamily A, member 4	PCDHGA4	56111	ENSG00000262576			Pcdhga4 (MGI:1935216)
chr5	141360135	141512978	5q31	5q31.3	606300	PCDHGB2	Protocadherin-gamma, subfamily B, member 2	PCDHGB2	56103	ENSG00000253910			Pcdhgb2 (MGI:1935170)
chr5	141364330	141512978	5q31	5q31.3	606292	PCDHGA5	Protocadherin-gamma, subfamily A, member 5	PCDHGA5	56110	ENSG00000253485			Pcdhga5 (MGI:1935217)
chr5	141370263	141512978	5q31	5q31.3	606301	PCDHGB3	Protocadherin-gamma, subfamily B, member 3	PCDHGB3	56102	ENSG00000262209			Pcdhgb8 (MGI:1935200)
chr5	141374083	141512978	5q31	5q31.3	606293	PCDHGA6	Protocadherin-gamma, subfamily A, member 6	PCDHGA6	56109	ENSG00000253731			Pcdhga6 (MGI:1935218)
chr5	141382738	141512978	5q31	5q31.3	606294	PCDHGA7	Protocadherin-gamma, subfamily A, member 7	PCDHGA7	56108	ENSG00000253537			Pcdhga7 (MGI:1935219)
chr5	141387884	141512978	5q31	5q31.3	603058	PCDHGB4	Protocadherin-gamma, subfamily B, member 4	PCDHGB4	8641	ENSG00000253953			Pcdhgb4 (MGI:1935173)
chr5	141391915	141512978	5q31	5q31.3	606295	PCDHGA8	Protocadherin-gamma, subfamily A, member 8	PCDHGA8	9708	ENSG00000253767			Pcdhga8 (MGI:1935221)
chr5	141398127	141512978	5q31	5q31.3	606302	PCDHGB5	Protocadherin-gamma, subfamily B, member 5	PCDHGB5	56101	ENSG00000276547			Pcdhgb5 (MGI:1935196)
chr5	141402952	141512978	5q31	5q31.3	606296	PCDHGA9	Protocadherin-gamma, subfamily A, member 9	PCDHGA9	56107	ENSG00000261934			Pcdhga9 (MGI:1935226)
chr5	141408202	141512978	5q31	5q31.3	606303	PCDHGB6	Protocadherin-gamma, subfamily B, member 6	PCDHGB6	56100	ENSG00000253305			Pcdhgb6 (MGI:1935197)
chr5	141413175	141512978	5q31	5q31.3	606297	PCDHGA10	Protocadherin-gamma, subfamily A, member 10	PCDHGA10	56106	ENSG00000253846			Pcdhga10 (MGI:1935227)
chr5	141417646	141512980	5q31	5q31.3	606304	PCDHGB7	Protocadherin-gamma, subfamily B, member 7	PCDHGB7	56099	ENSG00000254122			Pcdhgb7 (MGI:1935199)
chr5	141420969	141512978	5q31	5q31.3	606298	PCDHGA11	Protocadherin-gamma, subfamily A, member 11	PCDHGA11	56105	ENSG00000253873			Pcdhga11 (MGI:1935228)
chr5	141430590	141512978	5q31	5q31.3	603059	PCDHGA12	Protocadherin-gamma, subfamily A, member 12	PCDHGA12	26025	ENSG00000253159			Pcdhga12 (MGI:1935229)
chr5	141476001	141512976	5q31	5q31.3	603627	PCDHGC3	Protocadherin-gamma, subfamily C, member 3	PCDHGC3	5098	ENSG00000240184			Pcdhgc3 (MGI:1935201)
chr5	141485173	141512978	5q31	5q31.3	606305	PCDHGC4	Protocadherin-gamma, subfamily C, member 4	PCDHGC4	56098	ENSG00000242419			Pcdhgc4 (MGI:1935203)
chr5	141489240	141512978	5q31	5q31.3	606306	PCDHGC5	Protocadherin-gamma, subfamily C, member 5	PCDHGC5	56097	ENSG00000240764			Pcdhgc5 (MGI:1935205)
chr5	141515015	141619054	5q31	5q31.3	602121	DIAPH1, DFNA1, LFHL1, SCBMS	Diaphanous, Drosophila, homolog of, 1	DIAPH1	1729	ENSG00000131504		Deafness, autosomal dominant 1, 124900 (3), Autosomal dominant; Seizures, cortical blindness, microcephaly syndrome, 616632 (3), Autosomal recessive	Diaph1 (MGI:1194490)
chr5	141620875	141636855	5q31	5q31.3	605166	HDAC3	Histone deacetylase 3	HDAC3	8841	ENSG00000171720			Hdac3 (MGI:1343091)
chr5	141636949	141641076	5q31.3	5q31.3	611213	RELL2	Relt-like 2	RELL2	285613	ENSG00000164620			Rell2 (MGI:1918044)
chr5	141639301	141651442	5q31.3	5q31.3	617555	FCHSD1, NWK2	FCH and double SH3 domains protein 1	FCHSD1	89848	ENSG00000197948			Fchsd1 (MGI:2441771)
chr5	141653400	141682232	5q31.3	5q31.3	606647	ARAP3, CENTD3	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3	ARAP3	64411	ENSG00000120318			Arap3 (MGI:2147274)
chr5	141850392	141878409	5q32-q33	5q31.3	603626	PCDH1, PC42	Protocadherin 1 (cadherin-like 1)	PCDH1	5097	ENSG00000156453			Pcdh1 (MGI:104692)
chr5	141923819	141952030	5q31.3	5q31.3	615741	KIAA0141, DELE	KIAA0141 gene	DELE1	9812	ENSG00000081791			0610009O20Rik (MGI:1914089)
chr5	141943584	141959061	5q31	5q31.3	605622	PCDH12, VECAD2, PCDH12	Protocadherin 12 (cadherin, vascular endothelial, 2)	PCDH12	51294	ENSG00000113555		Microcephaly, seizures, spasticity, and brain calcification, 605622 (3)	Pcdh12 (MGI:1855700)
chr5	141966806	141990290	5q23.3-q31.1	5q31.3	605675	RNF14, ARA54	RING finger protein-14	RNF14	9604	ENSG00000013561			Rnf14 (MGI:1929668)
chr5	142000668	142013054	5q31	5q31.3	601798	GNPDA1, GNP1, GNPI, KIAA0060	Glucosamine 6-phosphate deaminase 1	GNPDA1	10007	ENSG00000113552			Gnpda1 (MGI:1347054)
chr5	142108758	142154442	5q31.3	5q31.3	612050	NDFIP1, N4WBP5	NEDD4 family-interacting protein 1	NDFIP1	80762	ENSG00000131507			Ndfip1 (MGI:1929601)
chr5	142310426	142325054	5q31.3	5q31.3	607984	SPRY4, HH17	Sprouty, Drosophila, homolog of	SPRY4	81848	ENSG00000187678		Hypogonadotropic hypogonadism 17 with or without anosmia, 615266 (3), Autosomal dominant	Spry4 (MGI:1345144)
chr5	142317619	142318321	5q31.3	5q31.3	617617	SPRY4IT1	SPRY4 intronic transcript 1, noncoding	SPRY4-IT1	100642175		in intron 2 of SPRY4		
chr5	142592177	142698069	5q31	5q31.3	131220	FGF1, FGFA	Fibroblast growth factor-1 (acidic)	FGF1	2246	ENSG00000113578			Fgf1 (MGI:95515)
chr5	142770369	143229010	5q31	5q31.3	605370	ARHGAP26, GRAF	RHO GTPase-activating protein 26	ARHGAP26	23092	ENSG00000145819		Leukemia, juvenile myelomonocytic, somatic, 607785 (3)	Arhgap26 (MGI:1918552)
chr5	143277930	143435511	5q31	5q31.3	138040	NR3C1, GCR, GRL, GCRST	Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)	NR3C1	2908	ENSG00000113580		Glucocorticoid resistance, 615962 (3), Autosomal dominant	Nr3c1 (MGI:95824)
chr5	143812160	143820718	5q32	5q31.3	609961	HLA-HB1	Minor histocompatibility antigen HB-1	HMHB1	57824	ENSG00000158497			
chr5	144158158	144170713	5q32	5q31.3	611483	YIPF5, SMAP5, YIP1A	Yip1 domain family, member 5	YIPF5	81555	ENSG00000145817			Yipf5 (MGI:1914430)
chr5	144170722	144485685	5q31.3	5q31.3	613423	KCTD16, KIAA1317	Potassium channel tetramerization domain-containing 16	KCTD16	57528	ENSG00000183775			Kctd16 (MGI:1914659)
chr5	145858537	145931672	5q32	5q32	615762	GRXCR2, DFNB101	Glutaredoxin, cysteine-rich, 2	GRXCR2	643226	ENSG00000204928	mutation identified in 1 DFNB101 family	?Deafness, autosomal recessive 101, 615837 (3), Autosomal recessive	Grxcr2 (MGI:2685697)
chr5	145936562	146081772	5q32	5q32	613377	SH3RF2, HEPP1	SH3 domain-containing RING finger protein 2	SH3RF2	153769	ENSG00000156463			Sh3rf2 (MGI:2444628)
chr5	146113025	146182786	5q32	5q32	151350	LARS, LFIS, ILFS1	Leucyl-tRNA synthetase	LARS	51520	ENSG00000133706	mutation identified in 1 family	?Infantile liver failure syndrome 1, 615438 (3), Autosomal recessive	Lars (MGI:1913808)
chr5	146339023	146340519	5q31	5q32	602460	POU4F3, BRN3C	POU domain, class 4, transcription factor-3	POU4F3	5459	ENSG00000091010		Deafness, autosomal dominant 15, 602459 (3), Autosomal dominant	Pou4f3 (MGI:102523)
chr5	146447309	146511507	5q31	5q32	605409	TCERG1, TAF2S, CA150	Transcription elongation regulator 1 (transcription factor CA150)	TCERG1	10915	ENSG00000113649			Tcerg1 (MGI:1926421)
chr5	146589503	147081519	5q31-q33	5q32	604325	PPP2R2B	Protein phosphatase 2, regulatory subunit B, beta	PPP2R2B	5521	ENSG00000156475		Spinocerebellar ataxia 12, 604326 (3), Autosomal dominant	Ppp2r2b (MGI:1920180)
chr5	147390807	147510055	5q32	5q32	601168	DPYSL3, ULIP, DRP3	Dihydropyrimidinase-like 3	DPYSL3	1809	ENSG00000113657			Dpysl3 (MGI:1349762)
chr5	147585438	147782847	5q32	5q32	611197	JAKMIP2, JAMIP2, NECC1, KIAA0555	Janus kinase and microtubule-interacting protein 2	JAKMIP2	9832	ENSG00000176049			Jakmip2 (MGI:1923467)
chr5	147824579	147839230	5q32	5q32	167790	SPINK1, PSTI, PCTT, TATI, TCP	Serine protease inhibitor, Kazal type I (pancreatic secretory trypsin inhibitor)	SPINK1	6690	ENSG00000164266		{Fibrocalculous pancreatic diabetes, susceptibility to}, 608189 (3), Autosomal recessive, Autosomal dominant; Pancreatitis, hereditary, 167800 (3), Autosomal dominant; Tropical calcific pancreatitis, 608189 (3), Autosomal recessive, Autosomal dominant	Spink1 (MGI:106202)
chr5	147878710	147882192	5q31-q34	5q32	606531	SCGB3A2, UGRP1	Secretoglobin, family 3A, member 2 (uteroglobin-related protein 1)	SCGB3A2	117156	ENSG00000164265		{Asthma, susceptibility to}, 600807 (3), Autosomal dominant	Scgb3a2 (MGI:2153470)
chr5	148063971	148137361	5q32	5q32	605010	SPINK5, LEKTI	Serine protease inhibitor, Kazal type, 5	SPINK5	11005	ENSG00000133710		Netherton syndrome, 256500 (3), Autosomal recessive	Spink5 (MGI:1919682)
chr5	148202793	148215136	5q32	5q32	615868	SPINK6	Serine peptidase inhibitor, KAZAL-type, 6	SPINK6	404203	ENSG00000178172			
chr5	148268859	148286209	5q32	5q32	615205	SPINK13	Serine protease inhibitor, Kazal-type, 13	SPINK13	153218	ENSG00000214510			Spink13 (MGI:3642511)
chr5	148312426	148315918	5q32	5q32	617288	SPINK7, ECRG2	Serine peptidase inhibitor, Kazal-type, 7	SPINK7	84651	ENSG00000145879			Spink7 (MGI:3644691)
chr5	148323218	148341973	5q33.1	5q32	613511	SPINK9, LEKTI2	Serine protease inhibitor, Kazal-type, 9	SPINK9	643394	ENSG00000204909			
chr5	148383934	148442835	5q33.1	5q32	608533	FBXO38, FBX38, MOKA, HMN2D	F-box only protein 38	FBXO38	81545	ENSG00000145868		Neuronopathy, distal hereditary motor, type IID, 615575 (3), Autosomal dominant	
chr5	148451031	148654526	5q31-q33	5q32	602164	HTR4	5-hydroxytryptamine (serotonin) receptor-4	HTR4	3360	ENSG00000164270			Htr4 (MGI:109246)
chr5	148826592	148828633	5q32-q34	5q32	109690	ADRB2	Adrenergic, beta-2-, receptor, surface	ADRB2	154			{Asthma, nocturnal, susceptibility to}, 600807 (3), Autosomal dominant; Beta-2-adrenoreceptor agonist, reduced response to (3); {Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Adrb2 (MGI:87938)
chr5	148982149	149063173	5q32	5q32	608206	SH3TC2, KIAA1985, MNMN	SH3 domain and tetratricopeptide repeat domain 2	SH3TC2	79628	ENSG00000169247		Charcot-Marie-Tooth disease, type 4C, 601596 (3), Autosomal recessive; Mononeuropathy of the median nerve, mild, 613353 (3), Autosomal dominant	Sh3tc2 (MGI:2444417)
chr5	149141446	149260438	5q32	5q32	611305	ABLIM3, KIAA0843	Actin-binding LIM protein family, member 3	ABLIM3	22885	ENSG00000173210			Ablim3 (MGI:2442582)
chr5	149271837	149343636	5q33.1	5q32	614410	AFAP1L1	Actin filament-associated protein 1-like 1	AFAP1L1	134265	ENSG00000157510			Afap1l1 (MGI:2147199)
chr5	149374266	149404201	5q32-q34	5q32	604627	IL17B	Interleukin 17B	IL17B	27190	ENSG00000127743			Il17b (MGI:1928397)
chr5	149428917	149429022	5q33.1	5q32	612117	MIR143, MIRN143	Micro RNA 143	MIR143	406935				
chr5	149430645	149430732	5q33.1	5q32	611795	MIR145, MIRN145	Micro RNA 145	MIR145	406937				
chr5	149495893	149551551	5q32	5q32	600505	CSNK1A1	Casein kinase-1, alpha-1 polypeptide	CSNK1A1	1452	ENSG00000113712	previously assigned to 13q13		Csnk1a1 (MGI:1934950)
chr5	149730251	149857860	5q33	5q32	608886	PPARGC1B, PGC1B, PERC	Peroxisome proliferator-activated receptor-gamma, coactivator 1, beta	PPARGC1B	133522	ENSG00000155846		{Obesity, variation in}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Ppargc1b (MGI:2444934)
chr5	149732824	149732889	5q33.1	5q32	611957	MIR378, MIRN378	Micro RNA 378	MIR378A	494327				
chr5	149857955	149944792	5q31.2-q34	5q32	180071	PDE6A, PDEA, RP43	Phosphodiesterase-6A, cGMP-specific, rod, alpha	PDE6A	5145	ENSG00000132915		Retinitis pigmentosa 43, 613810 (3)	Pde6a (MGI:97524)
chr5	149960736	149987399	5q32-q33.1	5q32	606718	SLC26A2, DTD, DTDST, D5S1708, EDM4	Solute carrier family 26 (sulfate transporter), member 2 (diastrophic dysplasia sulfate transporter)	SLC26A2	1836	ENSG00000155850	distal to APC	Achondrogenesis Ib, 600972 (3), Autosomal recessive; Atelosteogenesis, type II, 256050 (3), Autosomal recessive; De la Chapelle dysplasia, 256050 (3), Autosomal recessive; Diastrophic dysplasia, 222600 (3), Autosomal recessive; Diastrophic dysplasia, broad bone-platyspondylic variant, 222600 (3), Autosomal recessive; Epiphyseal dysplasia, multiple, 4, 226900 (3), Autosomal recessive	Slc26a2 (MGI:892977)
chr5	150021526	150022052	5q33-qter	5q32	180464	RPS20B	Ribosomal protein S20B	RPS20P4	6226		?pseudogene		
chr5	150053290	150113371	5q32	5q32	164770	CSF1R, FMS, HDLS	Colony-stimulating factor-1 receptor; oncogene FMS (McDonough feline sarcoma)	CSF1R	1436	ENSG00000182578	FMS2 is 5' end	Leukoencephalopathy, diffuse hereditary, with spheroids, 221820 (3), Autosomal dominant	Csf1r (MGI:1339758)
chr5	150113838	150155858	5q32	5q32	173410	PDGFRB, PDGFR, IBGC4, IMF1, PENTT, KOGS	Platelet-derived growth factor receptor, beta polypeptide	PDGFRB	5159	ENSG00000113721	fusion gene with ETV6, HIP1, RABPT5, or H4 in chronic myeloproliferative disorders	Basal ganglia calcification, idiopathic, 4, 615007 (3), Autosomal dominant; Kosaki overgrowth syndrome, 616592 (3), Autosomal dominant; Myeloproliferative disorder with eosinophilia, 131440 (4), Autosomal dominant; Myofibromatosis, infantile, 1, 228550 (3), Autosomal dominant; Premature aging syndrome, Penttinen type, 601812 (3), Autosomal dominant	Pdgfrb (MGI:97531)
chr5	150166780	150184557	5q31-q33	5q32	600746	CDX1	Caudal type homeo box transcription factor 1	CDX1	1044	ENSG00000113722	100kb distal to CSF1R		Cdx1 (MGI:88360)
chr5	150189860	150211071	5q31-q32	5q32	606205	SLC6A7, PROT	Solute carrier family 6 (neurotransmitter transporter, L-proline), member 7	SLC6A7	6534	ENSG00000011083			Slc6a7 (MGI:2147363)
chr5	150219490	150289839	5q32	5q32	114078	CAMK2A, KIAA0968, CAMKA, MRD53	Calcium/calmodulin-dependent protein kinase II-alpha	CAMK2A	815	ENSG00000070808		Mental retardation, autosomal dominant 53, 617798 (3), Autosomal dominant	Camk2a (MGI:88256)
chr5	150296338	150302961	5q32	5q32	610009	ARSI	Arylsulfatase I	ARSI	340075	ENSG00000183876			Arsi (MGI:2670959)
chr5	150357638	150400307	5q32-q33.1	5q32-q33	606847	TCOF1, MFD1, TCS1	Treacle	TCOF1	6949	ENSG00000070814	prox. to SPARC	Treacher Collins syndrome 1, 154500 (3), Autosomal dominant	Tcof1 (MGI:892003)
chr5	150400000	177100000	5q33.1-q35.2		613269	FECD5, FCD3	Corneal dystrophy, Fuchs endothelial, 5		100380874		flanked by D5S470 and D5S2108	Corneal dystrophy, Fuchs endothelial, 5, 613269 (2)	
chr5	150401636	150412935	5q32	5q33.1	142790	CD74, DHLAG	CD74 antigen (invariant polypeptide of major histocompatibility class II antigen-associated)	CD74	972	ENSG00000019582			Cd74 (MGI:96534)
chr5	150444228	150449755	5q32	5q33.1	130620	RPS14, EMTB	Ribosomal protein S14	RPS14	6208	ENSG00000164587		Macrocytic anemia, refractory, due to 5q deletion, somatic, 153550 (3)	Rps14 (MGI:98107)
chr5	150485782	150558210	5q32-q33.3	5q33.1	600853	NDST1, HSST, MRT46	N-deacetylase/N-sulfotransferase (heparan sulfate-N-deacetylase/N-sulfotransferase)	NDST1	3340	ENSG00000070614		Mental retardation, autosomal recessive 46, 616116 (3), Autosomal recessive	Ndst1 (MGI:104719)
chr5	150586025	150659229	5q33.1	5q33.1	608155	SYNPO	Synaptopodin	SYNPO	11346	ENSG00000171992			Synpo (MGI:1099446)
chr5	150660840	150679367	5q31	5q33.1	610735	MYOZ3, FRP3	Myozenin 3	MYOZ3	91977	ENSG00000164591			Myoz3 (MGI:2179296)
chr5	150690789	150701106	5q33.1	5q33.1	612430	RBM22	RNA-binding motif protein 22	RBM22	55696	ENSG00000086589			Rbm22 (MGI:1914060)
chr5	150708746	150759094	5q33.1	5q33.1	614758	DCTN4, P62, DYN4	Dynactin 4	DCTN4	51164	ENSG00000132912			Dctn4 (MGI:1914915)
chr5	150777945	150796735	5q32	5q33.1	608324	SMIM3, NID67	Small integral membrane protein 3	SMIM3	85027	ENSG00000256235			Smim3 (MGI:1917088)
chr5	150846522	150902401	5q33.1	5q33.1	608212	IRGM, LRG47, IFI1, IBD19	Immunity-related GTPase family, M	IRGM	345611	ENSG00000237693		{Inflammatory bowel disease (Crohn disease) 19}, 612278 (3); {Mycobacterium tuberculosis, protection against}, 607948 (3)	Irgm2 (MGI:1926262)
chr5	150892957	150904982	5q33.1	5q33.1	612429	ZNF300	Zinc finger protein 300	ZNF300	91975	ENSG00000145908			
chr5	151020411	151028992	5q32-q33.1	5q33.1	138321	GPX3	Glutathione peroxidase-3, plasma	GPX3	2878	ENSG00000211445			Gpx3 (MGI:105102)
chr5	151029942	151087659	5q32-q33.1	5q33.1	607714	TNIP1, NAF1, KIAA0113	TNFAIP3-interacting protein 1	TNIP1	10318	ENSG00000145901			Tnip1 (MGI:1926194)
chr5	151100705	151157881	5q32-q34	5q33.1	114070	ANXA6, CBP68	Annexin A6 (calcium-binding protein p68)	ANXA6	309	ENSG00000197043			Anxa6 (MGI:88255)
chr5	151253051	151270393	5q31.3-q33.1	5q33.1	613109	GM2A	GM2 ganglioside activator protein	GM2A	2760	ENSG00000196743	pseudogene on chr.3	GM2-gangliosidosis, AB variant, 272750 (3), Autosomal recessive	Gm2a (MGI:95762)
chr5	151314977	151347589	5q33.1	5q33.1	608331	SLC36A2, PAT2	Solute carrier family 36 (proton/amino acid symporter), member 2	SLC36A2	153201	ENSG00000186335		Hyperglycinuria, 138500 (3), Autosomal dominant; Iminoglycinuria, digenic, 242600 (3), Autosomal recessive, Digenic recessive	Slc36a2 (MGI:1891430)
chr5	151411343	151556317	5q31-q33	5q33.1	606561	SLC36A1, LYAAT1, PAT1	Solute carrier family 36 (proton/amino acid symporter), member 1 (lysosomal amino acid transporter 1)	SLC36A1	206358	ENSG00000123643			Slc36a1 (MGI:2445299)
chr5	151504091	151594821	5q32-q33	5q33.1	604269	FAT2, MEGF1, SCA45	Fat tumor suppressor, Drosophila, homolog of, 2	FAT2	2196	ENSG00000086570		Spinocerebellar ataxia 45, 617769 (3), Autosomal dominant	Fat2 (MGI:2685369)
chr5	151661095	151687053	5q31.3-q32	5q33.1	182120	SPARC, ON, OI17	Osteonectin (secreted protein, acidic, cysteine-rich)	SPARC	6678	ENSG00000113140		Osteogenesis imperfecta, type XVII, 616507 (3), Autosomal recessive	Sparc (MGI:98373)
chr5	151742821	151758648	5q32	5q33.1	602270	ATOX1, HAH1	Antioxidant protein 1 (ATX, yeast, homolog of)	ATOX1	475	ENSG00000177556			Atox1 (MGI:1333855)
chr5	151771914	151805353	5q33.1	5q33.1	608431	G3BP1, G3BP	GTPase-activating protein SH3 domain-binding protein 1	G3BP1	10146	ENSG00000145907			G3bp1 (MGI:1351465)
chr5	151822512	151924835	5q32	5q33.1	138491	GLRA1, STHE, HKPX1	Glycine receptor, alpha-1 polypeptide	GLRA1	2741	ENSG00000145888		Hyperekplexia, hereditary 1, autosomal dominant or recessive, 149400 (3), Autosomal recessive, Autosomal dominant	Glra1 (MGI:95747)
chr5	152391540	152405278	5q33.1	5q33.1	605108	NMUR2, NMU2R, FM4	Neuromedin U receptor 2	NMUR2	56923	ENSG00000132911			Nmur2 (MGI:2441765)
chr5	153490523	153813872	5q33	5q33.2	138248	GRIA1, GLUR1	Glutamate receptor, ionotropic, AMPA 1	GRIA1	2890	ENSG00000155511			Gria1 (MGI:95808)
chr5	154038958	154057453	5q32-q33.3	5q33.2	600491	MFAP3	Microfibrillar-associated protein-3	MFAP3	4238	ENSG00000037749			Mfap3 (MGI:1924068)
chr5	154190734	154420983	5q33.2	5q33.2	608043	GALNT10, GalNAcT10	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 10	GALNT10	55568	ENSG00000164574			Galnt10 (MGI:1890480)
chr5	154445956	154461052	5q33.2	5q33.2	610398	SAP30L	SAP30-like protein	SAP30L	79685	ENSG00000164576			Sap30l (MGI:1354709)
chr5	154474971	154478263	5q33.2	5q33.2	602406	HAND1, EHAND	Heart- and neural crest derivatives-expressed 1	HAND1	9421	ENSG00000113196			Hand1 (MGI:103577)
chr5	154682662	154817606	5q33.2	5q33.2	612059	LARP1, LARP, KIAA0731	La ribonucleoprotein domain family, member 1	LARP1	23367	ENSG00000155506	incorrectly mapped to chromosome 10		Larp1 (MGI:1890165)
chr5	154857951	154876791	5q31-q33	5q33.2	603731	CNOT8, CALIF, POP2	CCR4-NOT transcription complex, subunit 8	CNOT8	9337	ENSG00000155508			Cnot8 (MGI:1916375)
chr5	154887415	154938215	5q33.2	5q33.2	607005	GEMIN5	GEM-associated protein 5	GEMIN5	25929	ENSG00000082516			Gemin5 (MGI:2449311)
chr5	154941072	154969410	5q33	5q33.2	611835	MRPL22	Mitochondrial ribosomal protein L22	MRPL22	29093	ENSG00000082515			Mrpl22 (MGI:1333794)
chr5	155013754	155018131	5q33.1	5q33.2	609184	KIF4B	Kinesin family member 4B	KIF4B	285643	ENSG00000226650			
chr5	155728635	156767787	5q33	5q33.2-q33.3	601411	SGCD, SGD, LGMD2F, CMD1L	Sarcoglycan, delta (35kD dystrophin-associated glycoprotein)	SGCD	6444	ENSG00000170624	mutant in Syrian hamster cardiomyopathy	Cardiomyopathy, dilated, 1L, 606685 (3); Muscular dystrophy, limb-girdle, type 2F, 601287 (3), Autosomal recessive	Sgcd (MGI:1346525)
chr5	156919281	156963254	5q33.2	5q33.3	610096	TIMED4, TIM4, SMUCKLER	T-cell immunoglobulin and mucin domains-containing protein 4	TIMD4	91937	ENSG00000145850			Timd4 (MGI:2445125)
chr5	157028382	157069632	5q33.2	5q33.3	606518	HAVCR1, HAVCR	Hepatitis A virus cellular receptor 1	HAVCR1	26762	ENSG00000113249			
chr5	157085831	157109236	5q33.2	5q33.3	606652	TIM3	T-cell immunoglobulin- and mucin-domain-containing molecule	HAVCR2	84868	ENSG00000135077			Havcr2 (MGI:2159682)
chr5	157138439	157142909	5q33.3	5q33.3	605045	MED7, CRSP9, CRSP33	Mediator complex subunit 7	MED7	9443	ENSG00000155868			Med7 (MGI:1913463)
chr5	157180895	157255184	5q32	5q33.3	186973	ITK, EMT, LPFS1	T-cell-specific tyrosine kinase; homolog of mouse T-cell itk/tsk tyrosine kinase	ITK	3702	ENSG00000113263		Lymphoproliferative syndrome 1, 613011 (3), Autosomal recessive	Itk (MGI:96621)
chr5	157266079	157395597	5q33.3	5q33.3	606323	CYFIP2	Cytoplasmic FMRP interacting protein 2	CYFIP2	26999	ENSG00000055163			Cyfip2 (MGI:1924134)
chr5	157460018	157474721	5q33	5q33.3	609383	NIPAL4, ICHYN, ARCI6	NIPA-like domain-containing 4	NIPAL4	348938	ENSG00000172548		Ichthyosis, congenital, autosomal recessive 6, 612281 (3), Autosomal recessive	Nipal4 (MGI:2444671)
chr5	157477303	157575822	5q32-q33	5q33.3	603640	ADAM19, MLTNB	A disintegrin and metalloproteinase domain-19 (meltrin-beta, mouse, homolog of)	ADAM19	8728	ENSG00000135074			Adam19 (MGI:105377)
chr5	157743694	157760708	5q33.3	5q33.3	617910	LSM11	Lsm11, U7 small nuclear RNA-associated protein	LSM11	134353	ENSG00000155858			Lsm11 (MGI:1919540)
chr5	157785742	157859174	5q33.3	5q33.3	607265	CLINT1, EPN4, EPNR, KIAA0171	Clathrin interactor 1 (epsin 4)	CLINT1	9685	ENSG00000113282			Clint1 (MGI:2144243)
chr5	158695914	159099761	5q34	5q33.3	164343	EBF, OLF1	Early B-cell factor (olfactory neuronal transcription factor 1)	EBF1	1879	ENSG00000164330			Ebf1 (MGI:95275)
chr5	159263066	159286039	5q33.3	5q33.3	609867	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	UBLCP1	134510	ENSG00000164332			Ublcp1 (MGI:1933105)
chr5	159314782	159330472	5q33.3	5q33.3	161561	IL12B, NKSF2, IMD29	Interleukin-12B (natural killer cell stimulatory factor-2, cytotoxic lymphocyte maturation factor-2, p40)	IL12B	3593	ENSG00000113302	between GLR1 and GABRA1	Immunodeficiency 29, mycobacteriosis, 614890 (3), Autosomal recessive	Il12b (MGI:96540)
chr5	159916732	159989204	5q33	5q33.3	104220	ADRA1B	Adrenergic, alpha-1B-, receptor	ADRA1B	147	ENSG00000170214			Adra1b (MGI:104774)
chr5	160009099	160065544	5q32-q33.2	5q33.3	601963	TTC1, TPR1	Tetratricopeptide repeat domain-1	TTC1	7265	ENSG00000113312			Ttc1 (MGI:1914077)
chr5	160043537	160120700	5q33.3	5q33.3	617823	PWWP2A	PWWP domain-containing protein 2A	PWWP2A	114825	ENSG00000170234			Pwwp2a (MGI:1918052)
chr5	160187366	160238721	5q23-q35	5q33.3	600422	FABP6, ILLBP	Fatty acid-binding protein 6, ileal (gastrotropin)	FABP6	2172	ENSG00000170231			Fabp6 (MGI:96565)
chr5	160393147	160400096	5q33.3	5q33.3	615253	C5orf54, ZBED8, BUSTER3	Chromosome 5 open reading frame 54	ZBED8	63920	ENSG00000221886			
chr5	160421806	160428743	5q33	5q33.3	604147	PTTG1, EAP1, TUTR1	Pituitary tumor-transforming gene 1	PTTG1	9232	ENSG00000164611			Pttg1 (MGI:1353578)
chr5	160485351	160485449	5q33.3	5q33.3	610566	MIR146A, MIRN146A	Micro RNA 146A	MIR146A	406938				
chr5	160500000	177100000	5q34-q35.2		608036	NIDDM4	Diabetes mellitus, noninsulin-dependent, 4		100188782			{Diabetes mellitus, noninsulin-dependent}, 125853 (2), Autosomal dominant	
chr5	161288428	161548123	5q34-q35	5q34	600232	GABRB2, ICEE2	Gamma-aminobutyric acid (GABA) A receptor, beta-2	GABRB2	2561	ENSG00000145864		Epileptic encephalopathy, infantile or early childhood, 2, 617829 (3), Autosomal dominant	Gabrb2 (MGI:95620)
chr5	161685651	161702591	5q31.1-q35	5q34	137143	GABRA6	Gamma-aminobutyric acid (GABA) A receptor, alpha-6	GABRA6	2559	ENSG00000145863			Gabra6 (MGI:95618)
chr5	161847190	161899958	5q34-q35	5q34	137160	GABRA1, EJM5, ECA4, EIEE19	Gamma-aminobutyric acid (GABA) A receptor, alpha-1	GABRA1	2554	ENSG00000022355	in same 200kb as GABRG2	{Epilepsy, childhood absence, susceptibility to, 4}, 611136 (3); {Epilepsy, juvenile myoclonic, susceptibility to, 5}, 611136 (3); Epileptic encephalopathy, early infantile, 19, 615744 (3), Autosomal dominant	Gabra1 (MGI:95613)
chr5	162067641	162155538	5q34	5q34	137164	GABRG2, GEFSP3, CAE2, ECA2	Gamma-aminobutyric acid (GABA) A receptor, gamma-2	GABRG2	2566	ENSG00000113327	in alpha/beta/gamma cluster	{Epilepsy, childhood absence, susceptibility to, 2}, 607681 (3), Autosomal dominant; Epilepsy, generalized, with febrile seizures plus, type 3, 611277 (3), Autosomal dominant; Febrile seizures, familial, 8, 611277 (3), Autosomal dominant	Gabrg2 (MGI:95623)
chr5	163437570	163445015	5q32-q34	5q34	601578	CCNG1	Cyclin G1	CCNG1	900	ENSG00000113328			Ccng1 (MGI:102890)
chr5	163460510	163491944	5q33.2	5q34	600936	HMMR	Hyaluronan-mediated motility receptor (RHAMM)	HMMR	3161	ENSG00000072571		{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant	Hmmr (MGI:104667)
chr5	166979065	168264158	5q34	5q34	610119	TENM2, ODZ2, TNM2, KIAA1127	Teneurin transmembrane protein 2	TENM2	57451	ENSG00000145934			Tenm2 (MGI:1345184)
chr5	168292059	168472302	5q34-q35.2	5q34	610533	WWC1, KIBRA, KIAA0869, MEMRYQTL	WW, C2, and coiled-coil domain-containing 1	WWC1	23286	ENSG00000113645		[Memory, enhanced, QTL], 615602 (3)	Wwc1 (MGI:2388637)
chr5	168486457	168519305	5q34	5q34	107820	RARS, HLD9	Arginyl-tRNA synthetase	RARS	5917	ENSG00000113643		Leukodystrophy, hypomyelinating, 9, 616140 (3), Autosomal recessive	Rars (MGI:1914297)
chr5	168555622	168579608	5q35	5q34	606161	PANK3	Pantothenate kinase 3	PANK3	79646	ENSG00000120137			Pank3 (MGI:2387464)
chr5	168560895	168560972	5q34	5q34	613187	MIR103-1, MIRN103-1	Micro RNA 103-1	MIR103A1	406895				
chr5	168661732	169301128	5q35	5q34-q35	603745	SLIT3, SLIL2, MEGF5	Slit, Drosophila, homolog of, 3	SLIT3	6586	ENSG00000184347			Slit3 (MGI:1315202)
chr5	168768145	168768254	5q34	5q34	616771	MIR218-2	Micro RNA 218-2	MIR218-2	407001		in intron of SLIT3		
chr5	169000000	181538259	5q35		208100	AMCN, AMCN1	Arthrogryposis multiplex congenital, neurogenic	AMCN	261			Arthrogryposis multiplex congenita, neurogenic, 208100 (2), Autosomal recessive	
chr5	169000000	181538259	5q35		118840	CHR	Chromate resistance (sulfate transport)						
chr5	169583633	169604777	5q35.1	5q35.1	616401	SPDL1, CCDC99, SPINDLY	Spindly apparatus coiled-coil protein 1	SPDL1	54908	ENSG00000040275			Spdl1 (MGI:1917635)
chr5	169637246	170083381	5q35.1	5q35.1	603122	DOCK2, IMD40	Dedicator of cytokinesis 2	DOCK2	1794	ENSG00000134516		Immunodeficiency 40, 616433 (3), Autosomal recessive	Dock2 (MGI:2149010)
chr5	170105896	170109724	5q34	5q35.1	601093	FOXI1, FKHL10, FREAC6	Forkhead box I1	FOXI1	2299	ENSG00000168269	some patients have digenic mutations with SLC26A4	Enlarged vestibular aqueduct, 600791 (3), Autosomal recessive	Foxi1 (MGI:1096329)
chr5	170246232	170297841	5q33.1-qter	5q35.1	601603	LCP2, SLP76	Lymphocyte cytosolic protein-2 (SH2 domain-containing leukocyte protein of 76kD)	LCP2	3937	ENSG00000043462			Lcp2 (MGI:1321402)
chr5	170378160	170389676	5q34	5q35.1	603951	KCNMB1	Potassium large conductance calcium-activated channel, subfamily M, beta member 1	KCNMB1	3779	ENSG00000145936		{Hypertension, diastolic, resistance to}, 608622 (3), Autosomal dominant	Kcnmb1 (MGI:1334203)
chr5	170782840	170814046	5q32-q33	5q35.1	602729	GABRP	Gamma-aminobutyric acid receptor, pi	GABRP	2568	ENSG00000094755			Gabrp (MGI:2387597)
chr5	170861881	171300014	5q34	5q35.1	606141	RANBP17	RAN-binding protein 17	RANBP17	64901	ENSG00000204764			Ranbp17 (MGI:1929706)
chr5	171309283	171312133	5q35.1	5q35.1	604640	TLX3, HOX11L2, RNX	T-cell leukemia, homeobox 3	TLX3	30012	ENSG00000164438	activated in T-cell ALL		Tlx3 (MGI:1351209)
chr5	171387115	171410883	5q35	5q35.1	164040	NPM1	Nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin)	NPM1	4869	ENSG00000181163	fused with RARA in APL	Leukemia, acute myeloid, somatic, 601626 (3)	Npm1 (MGI:106184)
chr5	171419662	171457625	5q34	5q35.1	603726	FGF18	Fibroblast growth factor-18	FGF18	8817	ENSG00000156427			Fgf18 (MGI:1277980)
chr5	171861548	172009603	5q35.1	5q35.1	605651	FBXW11, FBXW1B, BTRC2, BTRCP2	F-box and WD40 domain protein 11	FBXW11	23291	ENSG00000072803			Fbxw11 (MGI:2144023)
chr5	172042069	172188341	5q35.1	5q35.1	603919	STK10, LOK	Serine/threonine protein kinase-10	STK10	6793	ENSG00000072786			Stk10 (MGI:1099439)
chr5	172209644	172283796	5q35	5q35.1	610174	UBTD2, DCUBP, MGC30022	Ubiquitin domain-containing protein 2	UBTD2	92181	ENSG00000168246			Ubtd2 (MGI:2444752)
chr5	172325180	172454522	5q35.1	5q35.1	613293	SH3PXD2B, TKS4, KIAA1295, FTHS	SH3 and PX domains-containing protein 2B	SH3PXD2B	285590	ENSG00000174705		Frank-ter Haar syndrome, 249420 (3), Autosomal recessive	Sh3pxd2b (MGI:2442062)
chr5	172641265	172691539	5q31	5q35.1	615893	NEURL1B, NEUR2	Neuralized E3 ubiquitin protein ligase 1B	NEURL1B	54492	ENSG00000214357			Neurl1b (MGI:3643092)
chr5	172768089	172771199	5q34	5q35.1	600714	DUSP1, CL100, PTPN10	Dual specificity phosphatase-1	DUSP1	1843	ENSG00000120129			Dusp1 (MGI:105120)
chr5	172983759	173034896	5q35.1	5q35.1	603931	ATP6V0E, ATP6H	ATPase, H+ transporting, lysosomal 9kD V0 subunit e	ATP6V0E1	8992	ENSG00000113732	previously mapped to Chr.2		Atp6v0e (MGI:1328318)
chr5	173020725	173020928	5q35.1	5q35.1	611331	SNORA74B	Small nucleolar RNA, H/ACA box, 74B	SNORA74B	677841		in intron 3 of ATP6V0E1		
chr5	173056348	173139287	5q35.1	5q35.1	617109	CREBRF, LRF, C5orf41	CREB3 recruitment factor	CREBRF	153222	ENSG00000164463			Crebrf (MGI:1924378)
chr5	173144441	173164386	5q35.1	5q35.1	603291	BNIP1, NIP1	BCL2/adenovirus E1B 19kD protein-interacting protein 1	BNIP1	662	ENSG00000113734			Bnip1 (MGI:109328)
chr5	173232103	173235320	5q34	5q35.1	600584	NKX2-5, NKX2E, CSX, CHNG5, VSD3, HLHS2	NK2 homeobox-5 gene	NKX2-5	1482	ENSG00000183072	near border with 5q35	Atrial septal defect 7, with or without AV conduction defects, 108900 (3), Autosomal dominant; Conotruncal heart malformations, variable, 217095 (3); Hypoplastic left heart syndrome 2, 614435 (3), Autosomal dominant; Hypothyroidism, congenital nongoitrous, 5, 225250 (3), Autosomal dominant; Tetralogy of Fallot, 187500 (3), Autosomal dominant; Ventricular septal defect 3, 614432 (3), Autosomal dominant	Nkx2-5 (MGI:97350)
chr5	173300000	177100000	5q35.2		612886	MENOQ4	Menopause, natural, age at, QTL4		100302519		associated with rs365132, rs7718874, rs402511, rs691141, rs2278493	{Menopause, natural, age at, QTL4}, 612886 (2)	
chr5	173314722	173329502	5q35.1	5q35.2	603665	STC2, STCRP	Stanniocalcin 2	STC2	8614	ENSG00000113739			Stc2 (MGI:1316731)
chr5	173607144	173617071	5q35.2	5q35.2	616745	BOD1, FAM44B	Biorientation of chromosomes in cell division 1	BOD1	91272	ENSG00000145919			Bod1 (MGI:1916806)
chr5	173888327	173960990	5q21	5q35.2	610607	CPEB4, KIAA1673	Cytoplasmic polyadenylation element-binding protein 4	CPEB4	80315	ENSG00000113742			Cpeb4 (MGI:1914829)
chr5	174045603	174109178	5q35.2	5q35.2	616752	HMP19, NSG2	Hypothalamus golgi apparatus-expressed protein, 19kD	NSG2	51617	ENSG00000170091			Nsg2 (MGI:1202070)
chr5	174724495	174730898	5q34-q35	5q35.2	123101	MSX2, CRS2, HOX8	msh, Drosophila, homeo box homolog of, 2	MSX2	4488	ENSG00000120149		Craniosynostosis 2, 604757 (3), Autosomal dominant; Parietal foramina 1, 168500 (3), Autosomal dominant; Parietal foramina with cleidocranial dysplasia, 168550 (3), Autosomal dominant	Msx2 (MGI:97169)
chr5	175440037	175444217	5q35.1	5q35.2	126449	DRD1	Dopamine receptor D1	DRD1	1812	ENSG00000184845	same 300kb fragment as GRL		Drd1 (MGI:99578)
chr5	175478497	175529741	5q35.2	5q35.2	615569	SFXN1	Sideroflexin 1	SFXN1	94081	ENSG00000164466			Sfxn1 (MGI:2137677)
chr5	175796538	175884020	5q35.2	5q35.2	605033	CPLX2, CPX2	Complexin 2	CPLX2	10814	ENSG00000145920			Cplx2 (MGI:104726)
chr5	175959530	176034904	5q35.2	5q35.2	606929	THOC3, TEX1	THO complex 3 (Tex1, yeast, homolog of)	THOC3	84321	ENSG00000051596			Thoc3 (MGI:1920916)
chr5	176383936	176388926	5q35.2	5q35.2	612861	NOP15, HSPC111	Nop16, S. cerevisiae, homolog of	NOP16	51491	ENSG00000048162			Nop16 (MGI:107862)
chr5	176392454	176416568	5q35.2	5q35.2	118970	CLTB	Clathrin, light polypeptide (Lcb)	CLTB	1212	ENSG00000175416	previously mapped to chr. 4		Cltb (MGI:1921575)
chr5	176448327	176510073	5q35.2	5q35.2	616935	FAF2, ETEA, UBXD8, KIAA0887	Fas-associated factor family, member 2	FAF2	23197	ENSG00000113194			Faf2 (MGI:1923827)
chr5	176595801	176610129	5q35.2	5q35.2	611239	GPRIN1, GRIN1, KIAA1893	G protein-regulated inducer of neurite outgrowth 1	GPRIN1	114787	ENSG00000169258			Gprin1 (MGI:1349455)
chr5	176620083	176630560	5q35	5q35.2	602569	SNCB	Synuclein, beta	SNCB	6620	ENSG00000074317		Dementia, Lewy body, 127750 (3), Autosomal dominant	Sncb (MGI:1889011)
chr5	176810558	176880897	5q35.2	5q35.2	607869	UNC5A, UNC5H1	UNC5, C. elegans, homolog of, A	UNC5A	90249	ENSG00000113763			Unc5a (MGI:894682)
chr5	176880868	176899372	5q35.2	5q35.2	142570	HK3	Hexokinase-3, white cell	HK3	3101	ENSG00000160883			Hk3 (MGI:2670962)
chr5	176905004	177022639	5q35	5q35.2	609433	UIMC1, RAP80	Ubiquitin interaction motif containing 1	UIMC1	51720	ENSG00000087206			Uimc1 (MGI:103185)
chr5	177022679	177081188	5q35.2	5q35.2	605308	ZNF346, JAZ	Zinc finger protein 346	ZNF346	23567	ENSG00000113761			Zfp346 (MGI:1349417)
chr5	177086871	177098141	5q35.1-qter	5q35.2	134935	FGFR4	Fibroblast growth factor receptor-4	FGFR4	2264	ENSG00000160867	distal to DRD1	{Cancer progression/metastasis} (3)	Fgfr4 (MGI:95525)
chr5	177131834	177300212	5q35	5q35.3	606681	NSD1, ARA267, STO, SOTOS1	Nuclear receptor binding SET domain protein 1	NSD1	64324	ENSG00000165671	fusion gene with NUP98 in AML	Leukemia, acute myeloid, 601626 (1), Autosomal dominant; Sotos syndrome 1, 117550 (3), Autosomal dominant	Nsd1 (MGI:1276545)
chr5	177301189	177303743	5q35.3	5q35.3	612415	RAB24	Ras-associated protein 24	RAB24	53917	ENSG00000169228			Rab24 (MGI:105065)
chr5	177303761	177306958	5q35.3	5q35.3	605733	PRELID1, PRELI, PX19	PRELI domain-containing protein 1	PRELID1	27166	ENSG00000169230			Prelid1 (MGI:1913744)
chr5	177305499	177312290	5q35.3	5q35.3	609450	MXD3, MAD3	MAX dimerization protein 3	MXD3	83463	ENSG00000213347			Mxd3 (MGI:104987)
chr5	177357670	177372600	5q35.3	5q35.3	602513	RGS14	Regulator of G protein signaling 14	RGS14	10636	ENSG00000169220			Rgs14 (MGI:1859709)
chr5	177384430	177412020	5q35	5q35.3	182309	SLC34A1, SLC17A2, NPT2, NPHLOP1, FRTS2, HCINF2	Solute carrier family 34 (sodium phosphate cotransporter), member 1	SLC34A1	6569	ENSG00000131183	mutation identified in 1 FRTS2 family	?Fanconi renotubular syndrome 2, 613388 (3), Autosomal recessive; Hypercalcemia, infantile, 2, 616963 (3), Autosomal recessive; Nephrolithiasis/osteoporosis, hypophosphatemic, 1, 612286 (3), Autosomal dominant	Slc34a1 (MGI:1345284)
chr5	177400106	177400635	5q35.2	5q35.3	612812	PFN3	Profilin 3	PFN3	345456	ENSG00000196570			Pfn3 (MGI:2178800)
chr5	177402137	177409575	5q33-qter	5q35.3	610619	F12, HAF, HAE3	Coagulation factor XII (Hageman factor)	F12	2161	ENSG00000131187		Angioedema, hereditary, type III, 610618 (3), Autosomal dominant; Factor XII deficiency, 234000 (3), Autosomal recessive	F12 (MGI:1891012)
chr5	177426495	177442848	5q35	5q35.3	600869	GRK6, GPRK6	G protein-coupled receptor kinase 6	GRK6	2870	ENSG00000198055			Grk6 (MGI:1347078)
chr5	177456611	177480367	5q35.3	5q35.3	126660	DBN1	Drebrin-1	DBN1	1627	ENSG00000113758			Dbn1 (MGI:1931838)
chr5	177483393	177497604	5q35.3	5q35.3	605903	PDLIM7, ENIGMA	PDZ and LIM domain 7 (enigma)	PDLIM7	9260	ENSG00000196923			Pdlim7 (MGI:1914649)
chr5	177501903	177510507	5q35.3	5q35.3	611435	DOK3, DOKL	Docking protein 3	DOK3	79930	ENSG00000146094			Dok3 (MGI:1351490)
chr5	177511576	177517325	5q35.3	5q35.3	608170	DDX41, ABS, MPLPF	DEAD/H box 41	DDX41	51428	ENSG00000183258		{Myeloproliferative/lymphoproliferative neoplasms, familial (multiple types), susceptibility to}, 616871 (3), Autosomal dominant	Ddx41 (MGI:1920185)
chr5	177519788	177554584	5q35.3	5q35.3	615813	FAM193B, IRIZIO, KIAA1931	Family with sequence similarity 193, member B	FAM193B	54540	ENSG00000146067			
chr5	177600101	177610346	5q35.2-q35.3	5q35.3	604327	B4GALT7, XGALT1, XGPT1, EDSSPD1	Beta-1,4-galactosyltransferase 7	B4GALT7	11285	ENSG00000027847		Ehlers-Danlos syndrome, spondylodysplastic type, 1, 130070 (3), Autosomal recessive	B4galt7 (MGI:2384987)
chr5	177992234	177996241	5q	5q35.3	601538	PROP1, CPHD2	Prophet of Pit1, paired-like homeodomain transcription factor	PROP1	5626	ENSG00000175325		Pituitary hormone deficiency, combined, 2, 262600 (3), Autosomal recessive	Prop1 (MGI:109330)
chr5	178149462	178153959	5q35.3	5q35.3	606470	NOLA2, NHP2, DKCB2	Nucleolar protein family A, member 2	NHP2	55651	ENSG00000145912		Dyskeratosis congenita, autosomal recessive 2, 613987 (3), Autosomal recessive	Nhp2 (MGI:1098547)
chr5	178207143	178232821	5q35.3	5q35.3	614683	PHYKPL, AGXT2L2, PHLU	5-phosphohydroxy-L-lysine phospho-lyase	PHYKPL	85007	ENSG00000175309	mutation identified in 1 PHLU patient	[?Phosphohydroxylysinuria], 615011 (3)	Phykpl (MGI:1920197)
chr5	178237615	178590554	5q35	5q35.3	610043	COL23A1	Collagen, type XXIII, alpha-1	COL23A1	91522	ENSG00000050767			Col23a1 (MGI:2653243)
chr5	178602663	178627052	5q35	5q35.3	607969	CLK4	CDC-like kinase 4	CLK4	57396	ENSG00000113240			Clk4 (MGI:1098551)
chr5	178711520	178730701	5q35.3	5q35.3	602444	TCF17, KID1	Transcription factor-17	ZNF354A	6940	ENSG00000169131			Zfp354a (MGI:103172)
chr5	178978326	178995122	5q35	5q35.3	604096	GRM6, MGLUR6, CSNB1B	Glutamate receptor, metabotropic, 6	GRM6	2916	ENSG00000113262		Night blindness, congenital stationary (complete), 1B, autosomal recessive, 257270 (3), Autosomal recessive	Grm6 (MGI:1351343)
chr5	179110850	179345429	5q23	5q35.3	604539	ADAMTS2, NPI, EDSDERMS	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 2 (procollagen I N-proteinase)	ADAMTS2	9509	ENSG00000087116		Ehlers-Danlos syndrome, dermatosparaxis type, 225410 (3), Autosomal recessive	Adamts2 (MGI:1347356)
chr5	179550550	179610025	5q35.3	5q35.3	610327	RUFY1	RUN and FYVE domains-containing protein 1	RUFY1	80230	ENSG00000176783			Rufy1 (MGI:2429762)
chr5	179614177	179634783	5q35.3	5q35.3	601035	HNRPH1	Heterogeneous nuclear ribonucleoprotein H	HNRNPH1	3187	ENSG00000169045			Hnrnph1 (MGI:1891925)
chr5	179678645	179731640	5q35	5q35.3	114217	CANX	Calnexin	CANX	821	ENSG00000127022			Canx (MGI:88261)
chr5	179732849	179777285	5q35	5q35.3	605424	MAML1	Mastermind, Drosophila, homolog of, 1	MAML1	9794	ENSG00000161021			Maml1 (MGI:1890504)
chr5	179793984	179796511	5q35	5q35.3	246530	LTC4S	Leukotriene C4 synthase	LTC4S	4056	ENSG00000213316		Leukotriene C4 synthase deficiency, 614037 (1), Autosomal recessive	Ltc4s (MGI:107498)
chr5	179797596	179806976	5q35	5q35.3	604561	MGAT4B	Alpha-1,3-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase, isozyme B	MGAT4B	11282	ENSG00000161013			Mgat4b (MGI:2143974)
chr5	179806387	179838077	5q35	5q35.3	601530	SQSTM1, P62, PDB3, FTDALS3, NADGP, DMRV	Sequestosome 1	SQSTM1	8878	ENSG00000161011		Frontotemporal dementia and/or amyotrophic lateral sclerosis 3, 616437 (3), Autosomal dominant; Myopathy, distal, with rimmed vacuoles, 617158 (3), Autosomal dominant; Neurodegeneration with ataxia, dystonia, and gaze palsy, childhood-onset, 617145 (3), Autosomal recessive; Paget disease of bone 3, 167250 (3), Autosomal dominant	Sqstm1 (MGI:107931)
chr5	179837265	179858839	5q35.3	5q35.3	617154	MRNIP, C5orf45	MRN complex-interacting protein	MRNIP	51149	ENSG00000161010			Mrnip (MGI:1915317)
chr5	180233593	180292070	5q35	5q35.3	602896	MAPK9, PRKM9, JNK2	Mitogen-activated protein kinase 9	MAPK9	5601	ENSG00000050748			Mapk9 (MGI:1346862)
chr5	180300689	180353386	5q34-q35	5q35.3	603865	GFPT2, GFAT2	Glutamine: fructose-6-phosphate amidotransferase 2	GFPT2	9945	ENSG00000131459			Gfpt2 (MGI:1338883)
chr5	180494372	180578404	5q35.3	5q35.3	608951	CNOT6, CCR4, KIAA1194	CCR4-NOT transcription complex, subunit 6	CNOT6	57472	ENSG00000113300			Cnot6 (MGI:2144529)
chr5	180590104	180591486	5q35	5q35.3	606500	SCGB3A1, HIN1	Secretoglobin, family 3A, member 1	SCGB3A1	92304	ENSG00000161055			Scgb3a1 (MGI:1915912)
chr5	180601505	180650297	5q35.3	5q35.3	136352	FLT4, VEGFR3, PCL, LMPH1A	fms-related tyrosine kinase-4 (vascular endothelial growth factor receptor 3)	FLT4	2324	ENSG00000037280		Hemangioma, capillary infantile, somatic, 602089 (3); Lymphedema, hereditary, IA, 153100 (3), Autosomal dominant	Flt4 (MGI:95561)
chr5	180790540	180815634	5q35	5q35.3	160995	MGAT1, GLYT1	Mannosyl (alpha-1,3-)-glycoprotein beta-1,2, N-acetylglucosaminyltransferase	MGAT1	4245	ENSG00000131446			Mgat1 (MGI:96973)
chr5	180843579	180861326	5q35.3	5q35.3	610281	ZFP62	Zinc finger protein 62	ZFP62	643836	ENSG00000196670			Zfp62 (MGI:99662)
chr5	180899076	180952165	5q35.3	5q35.3	615606	BTNL8, BTN9.2	Butyrophilin-like protein 8	BTNL8	79908	ENSG00000113303			
chr5	180988844	181006726	5q35	5q35.3	606192	BTNL3	Butyrophilin-like protein 3	BTNL3	10917	ENSG00000168903			
chr5	181097069	181097141	5q35.3	5q35.3	612995	TRV-CAC1-2, TRNAV2, TRV2	Transfer RNA valine (CAC) 1-2	TRV-CAC1-2	7240				
chr5	181188853	181188924	5q35.3	5q35.3	189912	TRP-TGG3-5, TRNAP3, TRP3	Transfer RNA-Pro (TGG) 3-5	TRP-TGG3-1	7219				
chr5	181191686	181191757	5q35.3	5q35.3	189913	TRT-TGT6-1, TRNAT1, TRT1	Transfer RNA-Thr (TGT) 6-1	TRT-TGT6-1	7236				
chr5	181193923	181218331	5q35.3	5q35.3	609315	TRIM7, GNIP	Tripartite motif-containing protein 7	TRIM7	81786	ENSG00000146054			Trim7 (MGI:2137353)
chr5	181218269	181218341	5q35.3	5q35.3	189921	TRV-AAC1-4, TRNAV1, TRV1	Transfer RNA valine (AAC) 1-4	TRV-AAC1-4	7239				
chr5	181221978	181222050	5q35.3	5q35.3	612996	TRK-CTT2-4, TRNAK2, TRK2	Transfer RNA lysine (CTT) 2-4	TRK-CTT2-3	790966				
chr5	181223262	181235807	5q35.3	5q35.3	610530	TRIM41	Tripartite motif-containing 41	TRIM41	90933	ENSG00000146063			Trim41 (MGI:2384814)
chr5	181236927	181243905	5q35.3	5q35.3	176981	GNB2L1, RACK1	Guanine nucleotide-binding protein, beta-2-like 1	RACK1	10399	ENSG00000204628			Rack1 (MGI:101849)
chr6	0	7100000	6p25		612558	CLLS4	Leukemia, chronic lymphocytic susceptibility to, 4		100270643		associated with rs872071	{Leukemia, chronic lymphocytic susceptibility to, 4}, 612558 (2)	
chr6	0	59800000	6p		122550	CSCI	Corticosterone side-chain isomerase		7944		?linked to MHC		
chr6	0	13400000	6pter-p24		612582	DEL6pter, C6DELpter	Chromosome 6pter-p24 deletion syndrome					Chromosome 6pter-p24 deletion syndrome, 612582 (4), Isolated cases	
chr6	0	25200000	6p25.3-p22.3		610294	INTLQ3	Intelligence quantitative trait locus 3		100462722			{Intelligence QTL3}, 610294 (2)	
chr6	0	7100000	6p25		608545	LRSL	Larsen-like syndrome		406214			Larsen-like syndrome, 608545 (2), Isolated cases	
chr6	292056	351354	6p25.3	6p25.3	616778	DUSP22, LMWDSP2, MKPX, VHX, JKAP, JSP1	Dual-specificity phosphatase 22	DUSP22	56940	ENSG00000112679			Dusp22 (MGI:1915926)
chr6	391738	411442	6p25-p23	6p25.3	601900	IRF4, LSIRF, SHEP8	Interferon regulatory factor-4	IRF4	3662	ENSG00000137265	dysregulated in t(6;14)	[Skin/hair/eye pigmentation, variation in, 8], 611724 (3)	Irf4 (MGI:1096873)
chr6	485137	693140	6p25.3	6p25.3	615329	EXOC2, SEC5L1, SEC5	Exocyst complex component 2	EXOC2	55770	ENSG00000112685			Exoc2 (MGI:1913732)
chr6	655938	656963	6p25.3-p25.1	6p25.3	609713	HUS1B	Hydroxyurea-sensitive 1, S. pombe, homolog of, B	HUS1B	135458	ENSG00000188996			Hus1b (MGI:2671003)
chr6	1312439	1314757	6p25	6p25.3	612788	FOXQ1, HFH1	Forkhead box Q1	FOXQ1	94234	ENSG00000164379			Foxq1 (MGI:1298228)
chr6	1389833	1395596	6p25.3	6p25.3	603250	FOXF2, FKHL6, FREAC2	Forkhead box F2	FOXF2	2295	ENSG00000137273			Foxf2 (MGI:1347479)
chr6	1605530	1607357	6p25	6p25.3	615976	FOXCUT, LINC01379	FOXC1 upstream transcript, noncoding	FOXCUT	101927703				
chr6	1610445	1613896	6p25	6p25.3	601090	FOXC1, FKHL7, FREAC3, IRID1, RIEG3, ASGD3	Forkhead, Drosophila, homolog-like 7	FOXC1	2296	ENSG00000054598		Anterior segment dysgenesis 3, multiple subtypes, 601631 (3), Autosomal dominant; Axenfeld-Rieger syndrome, type 3, 602482 (3), Autosomal dominant	Foxc1 (MGI:1347466)
chr6	1623799	2245633	6p25	6p25.3	602884	GMDS	GDP-mannose 4,6-dehydratase	GMDS	2762	ENSG00000112699			Gmds (MGI:1891112)
chr6	2765340	2785744	6p25.2	6p25.2	608196	WRNIP1, WHIP	Werner helicase-interacting protein 1	WRNIP1	56897	ENSG00000124535			Wrnip1 (MGI:1926153)
chr6	2832331	2842048	6pter-p24	6p25.2	130135	ELANH2, EI	Protease inhibitor 2 (anti-elastase), monocyte/neutrophil derived	SERPINB1	1992	ENSG00000021355			Serpinb1a (MGI:1913472)
chr6	2887264	2903317	6p25	6p25.2	601799	PI9, CAP3, SERPINB9	Protease inhibitor 9, ovalbumin type	SERPINB9	5272	ENSG00000170542			Serpinb9 (MGI:106603)
chr6	2948158	2972164	6p25	6p25.2	173321	SERPINB6, PI6, PTI, SPI3, DFNB91	Protease inhibitor 6 (placental thrombin inhibitor)	SERPINB6	5269	ENSG00000124570	mutation identified in 1 DFNB91 family	?Deafness, autosomal recessive 91, 613453 (3), Autosomal recessive	Serpinb6a (MGI:103123)
chr6	2999815	3019875	6p25	6p25.2	160998	NQO2, NMOR2	NAD(P)H dehydrogenase, quinone 2 (NAD(P)H menadione oxidoreductase-1, dioxin-inducible-2)	NQO2	4835	ENSG00000124588		{?Breast cancer susceptibility}, 114480 (1), Autosomal dominant	Nqo2 (MGI:104513)
chr6	3063840	3115191	6p25.2	6p25.2	603453	RIPK1, RIP1, RIP	Receptor-interacting serine/threonine kinase 1	RIPK1	8737	ENSG00000137275			Ripk1 (MGI:108212)
chr6	3118375	3153598	6p25	6p25.2	603156	BPHL	Biphenyl hydrolase-like	BPHL	670	ENSG00000137274			Bphl (MGI:1915271)
chr6	3153665	3157548	6p25.2	6p25.2	615101	TUBB2A, CDCBM5	Tubulin, beta-2A	TUBB2A	7280	ENSG00000137267		Cortical dysplasia, complex, with other brain malformations 5, 615763 (3), Autosomal dominant	Tubb2a (MGI:107861)
chr6	3224260	3227733	6p25.2	6p25.2	612850	TUBB2B, CDCBM7	Tubulin, beta-2B	TUBB2B	347733	ENSG00000137285	TUBB2A is 70kb telomeric to TUBB2B	Cortical dysplasia, complex, with other brain malformations 7, 610031 (3), Autosomal dominant	Tubb2b (MGI:1920960)
chr6	3254324	3308223	6p25.2	6p25.2	617550	PSMG4, PAC4, C6orf86	Proteasome assembly chaperone 4	PSMG4	389362	ENSG00000180822			Psmg4 (MGI:1916916)
chr6	3268972	3456573	6p25.2	6p25.2	611697	SLC22A23, C6orf85	Solute carrier family 22, member 23	SLC22A23	63027	ENSG00000137266			Slc22a23 (MGI:1920352)
chr6	3831900	3851319	6p25.2	6p25.2	614686	FAM60B, X5L	Family with sequence similarity 50, member B	FAM50B	26240	ENSG00000145945			Fam50b (MGI:1351640)
chr6	4021328	4064982	6p25.2	6p25.2	602338	PRPF4B, PRP4	Pre-mRNA processing factor 4, yeast, homolog of, B	PRPF4B	8899	ENSG00000112739			Prpf4b (MGI:109584)
chr6	4115692	4135596	6p25.2	6p25.2	608024	ECI2, PECI, DRS1	Enoyl-CoA delta isomerase 2	ECI2	10455	ENSG00000198721			Eci2 (MGI:1346064)
chr6	4706158	4955543	6p25.1	6p25.1	603778	CDYL	Chromodomain protein on Y chromosome-like	CDYL	9425	ENSG00000153046			Cdyl (MGI:1339956)
chr6	4992404	5004062	6p25.1	6p25.1	606117	RPP40	Ribonuclease P, 40kD subunit	RPP40	10799	ENSG00000124787			Rpp40 (MGI:1346084)
chr6	5031028	5260949	6p25.1	6p25.1	613311	LYRM4, ISD11, C6orf149, COXPD19	LYR motif-containing protein 4	LYRM4	57128	ENSG00000214113	mutation identified in 1 family	?Combined oxidative phosphorylation deficiency 19, 615595 (3), Autosomal recessive	Lyrm4 (MGI:2683538)
chr6	5261000	5771591	6p25.1	6p25.1	611592	FARS2, FARS1, COXPD14, SPG77	Phenylalanyl-tRNA synthetase 2, mitochondrial	FARS2	10667	ENSG00000145982		Combined oxidative phosphorylation deficiency 14, 614946 (3), Autosomal recessive; Spastic paraplegia 77, autosomal recessive, 617046 (3), Autosomal recessive	Fars2 (MGI:1917205)
chr6	5997998	6007604	6p25.1	6p25.1	607409	NRN1, NRN	Neuritin 1	NRN1	51299	ENSG00000124785			Nrn1 (MGI:1915654)
chr6	6144077	6320690	6p25-p24	6p25.1	134570	F13A1, F13A	Coagulation factor XIII, A polypeptide	F13A1	2162	ENSG00000124491		Factor XIIIA deficiency, 613225 (3), Autosomal recessive; {Myocardial infarction, protection against}, 608446 (3); {Venous thrombosis, protection against}, 188050 (3), Autosomal dominant	F13a1 (MGI:1921395)
chr6	6588638	6654982	6p25.1	6p25.1	605241	LY86, MD1	Lymphocyte antigen 86	LY86	9450	ENSG00000112799			Ly86 (MGI:1321404)
chr6	7100000	10600000	6p24.3		119530	OFC1, CL	Orofacial cleft-1 (cleft lip with or without cleft palate; isolated cleft palate)	OFC1	4963		probable heterogeneity	Orofacial cleft-1, 119530 (2), Autosomal dominant	
chr6	7107596	7251979	6p25	6p24.3	602209	RREB1	RAS-responsive element binding protein-1	RREB1	6239	ENSG00000124782			Rreb1 (MGI:2443664)
chr6	7281142	7313313	6p24.3	6p24.3	600868	SSR1	Signal sequence receptor, alpha	SSR1	6745	ENSG00000124783			Ssr1 (MGI:105082)
chr6	7326653	7389708	6p25.3-p24.1	6p24.3	608304	CTAG3, CAGE1	Cancer/testis antigen 3	CAGE1	285782	ENSG00000164304			Cage1 (MGI:1918463)
chr6	7389828	7418036	6p24.3	6p24.3	617753	RIOK1, RIO1	RIO kinase 1	RIOK1	83732	ENSG00000124784			Riok1 (MGI:1918590)
chr6	7541574	7586716	6p24	6p24.3	125647	DSP, KPPS2, PPKS2, DCWHKTA	Desmoplakin	DSP	1832	ENSG00000096696	splice variants result in DP I and DP II	Arrhythmogenic right ventricular dysplasia 8, 607450 (3), Autosomal dominant; Cardiomyopathy, dilated, with woolly hair and keratoderma, 605676 (3), Autosomal recessive; Dilated cardiomyopathy with woolly hair, keratoderma, and tooth agenesis, 615821 (3), Autosomal dominant; Epidermolysis bullosa, lethal acantholytic, 609638 (3), Autosomal recessive; Keratosis palmoplantaris striata II, 612908 (3); Skin fragility-woolly hair syndrome, 607655 (3), Autosomal recessive	Dsp (MGI:109611)
chr6	7726098	7881727	6p24-p23	6p24.3	112266	BMP6	Bone morphogenetic protein-6	BMP6	654	ENSG00000153162			Bmp6 (MGI:88182)
chr6	7881513	7910813	6p25.2	6p24.3	616412	TXNDC5, ERP46, ENDOPDI, HCC2	Thioredoxin domain-containing protein 5	TXNDC5	81567	ENSG00000239264			Txndc5 (MGI:2145316)
chr6	8013566	8064413	6p24.3	6p24.3	607289	BLOC1S5, BLOS5, MUTED	Biogenesis of lysosome-related organelles complex 1, subunit 5	BLOC1S5	63915	ENSG00000188428			Bloc1s5 (MGI:2178598)
chr6	8073359	8102594	6p25.1-p23	6p24.3	609206	EEF1E1	Eukaryotic translation elongation factor 1, epsilon-1	EEF1E1	9521	ENSG00000124802			Eef1e1 (MGI:1913393)
chr6	8413065	8436168	6p24.3	6p24.3	610845	SLC35B3, PAPST2	Solute carrier family 25 (3'-phosphoadenosine 5'-phosphosulfate transporter), member B3	SLC35B3	51000	ENSG00000124786			Slc35b3 (MGI:1913978)
chr6	8652208	8653845	6p24.3	6p24.3	612210	HULC	Highly upregulated in liver cancer	HULC	728655				
chr6	9850415	10211607	6p24	6p24.3	614287	OFCC1, MRDS1	OFC1 candidate gene 1	OFCC1	266553				Ofcc1 (MGI:2658851)
chr6	10396676	10419896	6p24	6p24.3	107580	TFAP2A, AP2TF, BOFS	Transcription factor AP-2 alpha (activating enhancer-binding protein 2 alpha)	TFAP2A	7020	ENSG00000137203		Branchiooculofacial syndrome, 113620 (3), Autosomal dominant	Tfap2a (MGI:104671)
chr6	10404501	10407926	6p24.3	6p24.3	617136	HIPSTR	Long noncoding RNA HIPSTR	TFAP2A-AS2	109729173		overlaps TFAP2A		
chr6	10521282	10629367	6p24-p23	6p24.3-p24.2	600429	GCNT2, Ii, CTRCT13	Glucosaminyl (N-acetyl) transferase 2, I-branching enzyme	GCNT2	2651	ENSG00000111846	previously assigned to 9q21	Adult i phenotype without cataract, 110800 (3), Autosomal dominant; [Blood group, Ii], 110800 (3), Autosomal dominant; Cataract 13 with adult i phenotype, 116700 (3), Autosomal recessive	Gcnt2 (MGI:1100870)
chr6	10690864	10709781	6p24.2	6p24.2	607811	PAK1IP1, PIP1	PAK1-interacting protein	PAK1IP1	55003	ENSG00000111845			Pak1ip1 (MGI:1915333)
chr6	10722914	10731128	6p24.3	6p24.2	615318	TMEM14C	Transmembrane protein 14C	TMEM14C	51522	ENSG00000111843			Tmem14c (MGI:1913404)
chr6	10762722	10838953	6p24.2	6p24.2	154235	MAK, RP62	Male germ cell-associated kinase	MAK	4117	ENSG00000111837		Retinitis pigmentosa 62, 614181 (3), Autosomal recessive	Mak (MGI:96913)
chr6	10873222	10881864	6p24.2	6p24.2	603716	GCM2, GCMB, HRPT4	Glial cells missing, Drosophila, homolog of, 2	GCM2	9247	ENSG00000124827		Hyperparathyroidism 4, 617343 (3), Autosomal dominant; Hypoparathyroidism, familial isolated, 146200 (3), Autosomal dominant	Gcm2 (MGI:1861438)
chr6	10886830	10974308	6p24.2	6p24.2	616799	SYCP2L, C6orf177	Synaptonemal complex protein 2-like	SYCP2L	221711	ENSG00000153157			Sycp2l (MGI:2685114)
chr6	10980758	11044390	6p24.2	6p24.2	611814	ELOVL2, SSC2	Elongation of very long chain fatty acids-like 2	ELOVL2	54898	ENSG00000197977			Elovl2 (MGI:1858960)
chr6	11102488	11111837	6p24.1	6p24.2	610524	ERVFRD-1	Endogenous retrovirus group FRD, member 1	ERVFRD-1	405754	ENSG00000244476			Synb (MGI:3045308)
chr6	11183297	11382347	6p24.2	6p24.2	602265	NEDD9, HEF1, CASL	Neural precursor cell expressed, developmentally downregulated 9	NEDD9	4739	ENSG00000111859			Nedd9 (MGI:97302)
chr6	11600000	25200000	6p24.1-p22.3		607017	DFNA21	Deafness, autosomal dominant 21	DFNA21	192644		previously mapped to 6p21.3	Deafness, autosomal dominant 21, 607017 (2), Autosomal dominant	
chr6	11713522	11779627	6p24.1	6p24.1	614348	C6orf105, ADTRP	Chromosome 6 open reading frame 105 (androgen-dependent TFPI-regulating protein)	ADTRP	84830	ENSG00000111863			Adtrp (MGI:1924596)
chr6	12002095	12212033	6p24-p22.3	6p24.1	194540	HIVEP1, ZNF40	Human immunodeficiency virus type I enhancer-binding protein-1	HIVEP1	3096	ENSG00000095951			Hivep1 (MGI:96100)
chr6	12256462	12297193	6p24-p23	6p24.1	131240	EDN1, ARCND3, QME, HDLCQ7	Endothelin-1	EDN1	1906	ENSG00000078401		Auriculocondylar syndrome 3, 615706 (3), Autosomal recessive; {High density lipoprotein cholesterol level QTL 7} (3); Question mark ears, isolated, 612798 (3), Autosomal dominant	Edn1 (MGI:95283)
chr6	12716634	13290461	6p24.1	6p24.1	608723	PHACTR1, KIAA1733	Phosphatase and actin regulator 1	PHACTR1	221692	ENSG00000112137			Phactr1 (MGI:2659021)
chr6	13304950	13328582	6p24.1	6p24.1	612655	TBC1D7, PIG51, TBC7, MGCPH	TBC1 domain family, member 7	TBC1D7	51256	ENSG00000145979		Macrocephaly/megalencephaly syndrome, autosomal recessive, 248000 (3), Autosomal recessive	Tbc1d7 (MGI:1914296)
chr6	13400000	15200000	6p23		611456	ETM3	Tremor, hereditary essential, 3		101027378		max lod at D6S1630 and D6S1605	Essential tremor, hereditary, 3, 611456 (2)	
chr6	13400000	46200000	6p23-p21		271250	SCAR3, SCABD	Spinocerebellar ataxia, autosomal recessive 3	SCAR3	85502			Spinocerebellar ataxia, autosomal recessive 3, 271250 (2), Autosomal recessive	
chr6	13400000	15200000	6p23		600511	SCZD3	Schizophrenia susceptibility locus, chromosome 6-related	SCZD3	6365		?same as DTNBP1; cognitive deficit type	{Schizophrenia}, 181500 (2), Autosomal dominant	
chr6	13574216	13615157	6p23	6p23	604483	SIRT5	Sirtuin, S. cerevisiae, homolog 5	SIRT5	23408	ENSG00000124523			Sirt5 (MGI:1915596)
chr6	13615326	13632469	6p23	6p23	611533	NOL7	Nucleolar protein 7	NOL7	51406	ENSG00000225921			Nol7 (MGI:1917328)
chr6	13621497	13711581	6p23	6p23	603854	RANBP9, RANBPM	RAN-binding protein 9	RANBP9	10048	ENSG00000010017			Ranbp9 (MGI:1928741)
chr6	13786548	13814993	6p23	6p23	616952	MCUR1, CCDC90A, FMP32	Mitochondrial calcium uniporter regulator 1	MCUR1	63933	ENSG00000050393			Mcur1 (MGI:1923387)
chr6	14117255	14136917	6p23	6p23	604534	CD83, HB15, BL11	CD83 antigen	CD83	9308	ENSG00000112149			Cd83 (MGI:1328316)
chr6	15200000	30500000	6p22		612368	ALPQTL3	Alkaline phosphatase, plasma level of, QTL 3		100196915		linkage with rs9467160	{Alkaline phosphatase, plasma level of, QTL3}, 612368 (2)	
chr6	15200000	25200000	6p22.3		615192	BWQTL4	Birth weight quantitative trait locus 4		101448071		associated with rs7756992	[Birth weight QTL4], 615192 (2)	
chr6	15200000	25200000	6p22.3		613290	CIHL	Hearing loss, cisplatin-induced, susceptibility to		100381207		associated with rs12201199	{?Hearing loss, cisplatin-induced, susceptibility to}, 613290 (2)	
chr6	15200000	27100000	6p22.3-p22.2		603209	CMAHP, CMAH	Cytidine monophospho-N-acetylneuraminic acid hydroxylase pseudogene	CMAHP	8418		mutation inactivates gene in humans		
chr6	15200000	46200000	6p22-p21		600202	DYX2	Dyslexia, susceptibility to, 2				?between D6S105 and TNFB	{Dyslexia, susceptibility to, 2}, 600202 (2), Autosomal dominant	
chr6	15200000	30500000	6p22		613015	NBLST4	Neuroblastoma, susceptibility to, 4		100306937		associated with rs6939340, rs4712653, rs9295536	{Neuroblastoma, susceptibility to, 4}, 613015 (2)	
chr6	15200000	36600000	6p22.3-p21.3		608244	OTSC3	Otosclerosis 3	OTSC3	170532			Otosclerosis 3, 608244 (2), Autosomal dominant	
chr6	15200000	46200000	6p22.3-p21.1		601431	TRNAA1	tRNA alanine-1	TRA-TGC7-1	7154				
chr6	15245974	15522041	6p24-p23	6p22.3	601594	JMJ	Jumonji	JARID2	3720	ENSG00000008083			Jarid2 (MGI:104813)
chr6	15522800	15663057	6p22.3	6p22.3	607145	DTNBP1, HPS7	Dystrobrevin-binding protein 1 (dysbindin)	DTNBP1	84062	ENSG00000047579		Hermansky-Pudlak syndrome 7, 614076 (3), Autosomal recessive	Dtnbp1 (MGI:2137586)
chr6	16129085	16151014	6p23-p22.3	6p22.3	610082	MYLIP, MIR	Myosin regulatory light chain-interacting protein	MYLIP	29116	ENSG00000007944			Mylip (MGI:2388271)
chr6	16238579	16295548	6p23	6p22.3	139265	GMPR, GMPR1	Guanosine monophosphate reductase	GMPR	2766	ENSG00000137198			Gmpr (MGI:1913605)
chr6	16299111	16761489	6p23	6p22.3	601556	ATXN1, ATX1, SCA1	Ataxin-1	ATXN1	6310	ENSG00000124788		Spinocerebellar ataxia 1, 164400 (3), Autosomal dominant	Atxn1 (MGI:104783)
chr6	17281507	17293874	6p22.3	6p22.3	617603	RBM24, RNPC6	RNA-binding motif protein 24	RBM24	221662	ENSG00000112183			Rbm24 (MGI:3610364)
chr6	17615034	17706833	6p22.3	6p22.3	603948	NUP153	Nucleoporin, 153kD	NUP153	9972	ENSG00000124789			Nup153 (MGI:2385621)
chr6	17759182	17987622	6p22.3	6p22.3	605433	KIF13A	Kinesin family member 13A	KIF13A	63971	ENSG00000137177			Kif13a (MGI:1098264)
chr6	18120486	18122619	6p22.3	6p22.3	608072	NHLRC1, EPM2A, EPM2B	NHL repeat-containing 1 gene (malin)	NHLRC1	378884	ENSG00000187566		Epilepsy, progressive myoclonic 2B (Lafora), 254780 (3), Autosomal recessive	Nhlrc1 (MGI:2145264)
chr6	18128310	18155168	6p22.3	6p22.3	187680	TPMT, TPMTD	Thiopurine S-methyltransferase	TPMT	7172	ENSG00000137364		{Thiopurines, poor metabolism of, 1}, 610460 (3), Autosomal recessive	Tpmt (MGI:98812)
chr6	18155387	18223852	6p22.3	6p22.3	613081	KDM1B, LSD2, AOF1	Lysine-specific demethylase 1B	KDM1B	221656	ENSG00000165097			
chr6	18224168	18264567	6p23	6p22.3	125264	DEK, D6S231E	DEK oncogene	DEK	7913	ENSG00000124795	fused with CAN in t(6;9)	Leukemia, acute nonlymphocytic, 125264 (2)	Dek (MGI:1926209)
chr6	19837369	19842199	6p22-p21.3	6p22.3	600581	ID4	Inhibitor of DNA binding 4, dominant negative helix-loop-helix protein	ID4	3400	ENSG00000172201			Id4 (MGI:99414)
chr6	20099683	20212463	6p23	6p22.3	611732	MBOAT1	Membrane-bound O-acetyltransferase domain-containing 1	MBOAT1	154141	ENSG00000172197			Mboat1 (MGI:2387184)
chr6	20401905	20493713	6p22	6p22.3	600427	E2F3	E2F transcription factor 3	E2F3	1871	ENSG00000112242			E2f3 (MGI:1096340)
chr6	20534456	21232403	6p22.3	6p22.3	611259	CDKAL1	CDK5 regulatory subunit-associated protein 1-like 1	CDKAL1	54901	ENSG00000145996			Cdkal1 (MGI:1921765)
chr6	21593740	21598618	6p22.3	6p22.3	184430	SOX4	SRY (sex determining region Y)-box 4	SOX4	6659	ENSG00000124766			Sox4 (MGI:98366)
chr6	21666412	22195819	6p22.3	6p22.3	616610	CASC15, LINC00340	Cancer susceptibility candidate 15, noncoding	CASC15	401237				
chr6	22134601	22147192	6p22	6p22.3	616206	NBAT1	Neuroblastoma-associated transcript 1, noncoding	NBAT1	729177				
chr6	22287243	22302896	6p22.2-p21.3	6p22.3	176760	PRL	Prolactin	PRL	5617	ENSG00000172179	?between 6cen and GLO1		Prl (MGI:97762)
chr6	24126185	24147528	6p22	6p22.3	616630	NRSN1, VMP	Neurensin 1	NRSN1	140767	ENSG00000152954			Nrsn1 (MGI:894662)
chr6	24171754	24383291	6p22.1	6p22.3	605755	DCDC2, RU2, KIAA1154, NPHP19, DFNB66, NSC	Doublecortin domain-containing protein 2	DCDC2	51473	ENSG00000146038	mutation identified in 1 DFNB66 family	?Deafness, autosomal recessive 66, 610212 (3), Autosomal recessive; Nephronophthisis 19, 616217 (3), Autosomal recessive; Sclerosing cholangitis, neonatal, 617394 (3), Autosomal recessive	Dcdc2a (MGI:2652818)
chr6	24356902	24358283	6p22.1	6p22.3	608211	KAAG1, RU2AS	Kidney-associated antigen 1	KAAG1	353219	ENSG00000146049			
chr6	24423968	24495231	6p22.1	6p22.3	602515	GPLD1, PIGPLD, GPIPLD	Phospholipase D1, glycosylphosphatidylinositol-specific	GPLD1	2822	ENSG00000112293			Gpld1 (MGI:106604)
chr6	24494968	24537206	6p22	6p22.3	610045	ALDH5A1, SSADH	Succinic semialdehyde dehydrogenase	ALDH5A1	7915	ENSG00000112294		Succinic semialdehyde dehydrogenase deficiency, 271980 (3), Autosomal recessive	Aldh5a1 (MGI:2441982)
chr6	24540127	24646154	6p22.2	6p22.3	609269	KIAA0319	KIAA0319 gene	KIAA0319	9856	ENSG00000137261			D130043K22Rik (MGI:3036268)
chr6	24649976	24666886	6p22.3-p22.1	6p22.3	605764	TDP2, TTRAP	Tyrosyl-DNA phosphodiesterase 2	TDP2	51567	ENSG00000111802		Spinocerebellar ataxia, autosomal recessive 23, 616949 (3), Autosomal recessive	Tdp2 (MGI:1860486)
chr6	24667034	24705068	6p22.3	6p22.3	615652	ACOT13, THEM2	Acyl-CoA thioesterase 13	ACOT13	55856	ENSG00000112304			Acot13 (MGI:1914084)
chr6	24774930	24786098	6p22.3	6p22.3	602842	GMNN, MGORS6	Geminin	GMNN	51053	ENSG00000112312		Meier-Gorlin syndrome 6, 616835 (3), Autosomal dominant	Gmnn (MGI:1927344)
chr6	24804280	25042287	6p22.3-p21.32	6p22.3	611410	FAM65B, C6orf32, KIAA0386, PL48, DFNB104	Family with sequence similarity 65, member B	RIPOR2	9750	ENSG00000111913	mutation identified in 1 DFNB104 family	?Deafness, autosomal recessive 104, 616515 (3), Autosomal recessive	Ripor2 (MGI:2444879)
chr6	25279427	25620529	6p22.2	6p22.2	609593	LRRC16A, LRRC16, CARMIL	Leucine-rich repeat-containing protein 16A	CARMIL1	55604	ENSG00000079691			Carmil1 (MGI:1915982)
chr6	25723742	25832107	6p23-p21.3	6p22.2	182308	SLC17A1, NPT1	Solute carrier family 17, sodium phosphate, member-1 (Sodium phosphate transport 1, kidney)	SLC17A1	6568	ENSG00000124568			Slc17a1 (MGI:103209)
chr6	25726062	25726561	6p22.2	6p22.2	613499	HISTH2AA, H2AFR, H2AA	Histone gene cluster 1, H2A histone family, member A	HIST1H2AA	221613	ENSG00000164508			Hist1h2ak (MGI:2448297)
chr6	25726908	25727344	6p22.2	6p22.2	609904	HIST1H2BA, TSH2B	Histone 1, H2BA	HIST1H2BA	255626	ENSG00000146047			Hist1h2ba (MGI:2448375)
chr6	25754672	25781174	6p22-p21.3	6p22.2	604216	SLC17A4	Solute carrier family 17 (sodium phosphate), member 4	SLC17A4	10050	ENSG00000146039			Slc17a4 (MGI:2442850)
chr6	25845099	25874242	6p21.3	6p22.2	611034	SLC17A3, NPT4, UAQTL4, GOUT4	Solute carrier family 17 (sodium phosphate cotransporter), member 3	SLC17A3	10786	ENSG00000124564		{Gout susceptibility 4}, 612671 (3), Autosomal dominant; [Uric acid concentration, serum, QTL4], 612671 (3), Autosomal dominant	Slc17a3 (MGI:2389216)
chr6	25912753	25930726	6p21.3	6p22.2	611049	SLC17A2, NPT3	Solute carrier family 17 (sodium phosphate cotransporter), member 2	SLC17A2	10246	ENSG00000112337			Slc17a2 (MGI:2443098)
chr6	26017031	26017811	6p21.3	6p22.2	142709	HIST1H1A, H1F1	Histone 1, H1a	HIST1H1A	3024	ENSG00000124610			
chr6	26020489	26020957	6p21.3	6p22.2	602810	HIST1H3A, H3FA	Histone 1, H3a	HIST1H3A	8350	ENSG00000275714			Hist1h3d (MGI:2448322)
chr6	26021678	26022049	6p21.3	6p22.2	602822	HIST1H4A, H4FA	Histone 1, H4a	HIST1H4A	8359	ENSG00000278637			Hist1h4d (MGI:2448423)
chr6	26026895	26027251	6p21.3	6p22.2	602829	HIST1H4B, H4FI	Histone 1, H4b	HIST1H4B	8366	ENSG00000278705			Hist4h4 (MGI:2448443)
chr6	26031588	26032059	6p21.3	6p22.2	602819	HIST1H3B, H3FL	Histone 1, H3fl	HIST1H3B	8358	ENSG00000274267	in major cluster on 6p		Hist2h3b (MGI:2448351)
chr6	26033091	26033567	6p21.3	6p22.2	602795	HIST1H2AB, H2AFM	Histone 1, H2ab	HIST1H2AB	8335	ENSG00000278463			Hist1h2ag (MGI:2448293)
chr6	26043226	26043656	6p21.3	6p22.2	602803	HIST1H2BB, H2BFF	Histone 1, H2bb	HIST1H2BB	3018	ENSG00000276410			Hist1h2bb (MGI:2448377)
chr6	26045410	26045868	6p21.3	6p22.2	602812	HIST1H3C, H3FC	Histone 1, H3c	HIST1H3C	8352	ENSG00000278272			Hist2h3c1 (MGI:2448355)
chr6	26055739	26056470	6p21.3	6p22.2	142710	HIST1H1C, H1F2	Histone 1, H1c	HIST1H1C	3006	ENSG00000187837			Hist1h1c (MGI:1931526)
chr6	26087280	26096215	6p21.3	6p22.2	613609	HFE, HLA-H, HFE1, MVCD7, TFQTL2	Hemochromatosis gene	HFE	3077	ENSG00000010704		{Alzheimer disease, susceptibility to}, 104300 (3), Autosomal dominant; Hemochromatosis, 235200 (3), Autosomal recessive; {Microvascular complications of diabetes 7}, 612635 (3); {Porphyria cutanea tarda, susceptibility to}, 176100 (3), Autosomal recessive, Autosomal dominant; {Porphyria variegata, susceptibility to}, 176200 (3), Autosomal dominant; [Transferrin serum level QTL2], 614193 (3)	Hfe (MGI:109191)
chr6	26103947	26104336	6p21.3	6p22.2	602827	HIST1H4C, H4FG	Histone 1, H4c	HIST1H4C	8364	ENSG00000197061			Hist2h4 (MGI:2140113)
chr6	26107411	26108135	6p21.3	6p22.2	142712	HIST1H1T, H1FT	Histone 1, H1t	HIST1H1T	3010	ENSG00000187475			Hist1h1t (MGI:1888530)
chr6	26123466	26123903	6p21.3	6p22.2	602847	HIST1H2BC, H2BFL	Histone 1, H2bc	HIST1H2BC	8347	ENSG00000180596			Hist1h2bg (MGI:2448386)
chr6	26124144	26124689	6p21.3	6p22.2	602794	HIST1H2AC, H2AFL	Histone 1, H2ac	HIST1H2AC	8334	ENSG00000180573			Hist1h2ao (MGI:2448302)
chr6	26156330	26157114	6p21.3	6p22.2	142220	HIST1H1E, H1F4, RMNS	Histone 1, H1e	HIST1H1E	3008	ENSG00000168298		Rahman syndrome, 617537 (3), Autosomal dominant	
chr6	26158007	26171348	6p21.3	6p22.2	602799	HIST1H2BD, H2BFB	Histone 1, H2bd	HIST1H2BD	3017	ENSG00000158373			Hist3h2ba (MGI:1925553)
chr6	26183795	26184229	6p21.3	6p22.2	602805	HIST1H2BE, H2BFH	Histone 1, H2be	HIST1H2BE	8344	ENSG00000274290			Hist1h2bl (MGI:2448403)
chr6	26188709	26189075	6p21.3	6p22.2	602823	HIST1H4D, H4FB	Histone 1, H4d	HIST1H4D	8360	ENSG00000277157			Hist1h4m (MGI:2448441)
chr6	26196783	26199292	6p21.3	6p22.2	602811	HIST1H3D, H3FB	Histone 1, H3d	HIST1H3D	8351	ENSG00000197409			Hist1h3a (MGI:2668828)
chr6	26198783	26199292	6p21.3	6p22.2	602792	HIST1H2AD, H2AFG	Histone 1, H2ad	HIST1H2AD	3013	ENSG00000196866			Hist1h2ab (MGI:2448306)
chr6	26199558	26199987	6p21.3	6p22.2	602804	HIST1H2BF, H2BFG	Histone 1, H2bf	HIST1H2BF	8343	ENSG00000277224			Hist1h2be (MGI:2448380)
chr6	26204644	26205020	6p21.3	6p22.2	602830	HIST1H4E, H4FJ	Histone 1, H4e	HIST1H4E	8367	ENSG00000276966			
chr6	26216199	26216643	6p21.3	6p22.2	602798	HIST1H2BG, H2BFA	Histone 1, H2bg	HIST1H2BG	8339	ENSG00000273802			Hist1h2bf (MGI:2448383)
chr6	26216919	26217482	6p21.3	6p22.2	602786	HIST1H2AE, H2AFA	Histone 1, H2ae	HIST1H2AE	3012	ENSG00000277075			Hist1h2ai (MGI:2448457)
chr6	26225154	26225615	6p21.3	6p22.2	602813	HIST1H3E, H3FD, H3.1	Histone 1, H3e	HIST1H3E	8353	ENSG00000274750	in cluster of 35 histone genes		Hist1h3h (MGI:2448349)
chr6	26234211	26234987	6p21.3	6p22.2	142210	HIST1H1D, H1F3	Histone 1, H1d	HIST1H1D	3007	ENSG00000124575			Hist1h1d (MGI:107502)
chr6	26240425	26240792	6p21.3	6p22.2	602824	HIST1H4F, H4FC	Histone 1, H4f	HIST1H4F	8361	ENSG00000274618			Hist1h4c (MGI:2448421)
chr6	26246610	26246976	6p21.3	6p22.2	602832	HIST1H4G, H4FL	Histone 1, H4g	HIST1H4G	8369	ENSG00000275663			
chr6	26250141	26250606	6p21.3	6p22.2	602816	HIST1H3F	Histone 1, H3f	HIST1H3F	8968	ENSG00000277775			Hist1h3i (MGI:2448350)
chr6	26251650	26252074	6p21.3	6p22.2	602806	HIST1H2BH, H2BFJ	Histone 1, H2bh	HIST1H2BH	8345	ENSG00000275713			Hist1h2br,Hist1h2bq (MGI:3710645,MGI:3702051)
chr6	26270917	26271383	6p21.3	6p22.2	602815	HIST1H3G, H3FH	Histone 1, H3g	HIST1H3G	8355	ENSG00000273983			Hist2h3c2 (MGI:2448357)
chr6	26272975	26273411	6p21.3	6p22.2	602807	HIST1H2BI, H2BFK	Histone 1, H2bi	HIST1H2BI	8346	ENSG00000278588			Hist1h2bc (MGI:1915274)
chr6	26285125	26285498	6p21.3	6p22.2	602828	HIST1H4H, H4FH	Histone 1, H4h	HIST1H4H	8365	ENSG00000158406			Hist1h4k (MGI:2448439)
chr6	26286525	26286596	6p23-q12	6p22.2	180621	TRNAM1, TRMI2, TRM2, RNTMT1	tRNA methionine-1	TRX-CAT1-2	7210				
chr6	26299676	26299748	6p22.3-p21.1	6p22.2	601432	TRNAR3, TRR3	tRNA arginine-3	TRR-TCG4-1	7232				
chr6	26365158	26378319	6p22.1	6p22.2	613594	BTN3A2, BTF4	Butyrophilin, subfamily 3, member A2	BTN3A2	11118	ENSG00000186470			
chr6	26382892	26394873	6p22.1	6p22.2	613591	BTN2A2, BTF2	Butyrophilin, subfamily 2, member A2	BTN2A2	10385	ENSG00000124508			Btn2a2 (MGI:3606486)
chr6	26402236	26415215	6p22.1	6p22.2	613593	BTN3A1, BTF5, CD277	Butyrophilin, subfamily 3, member A1	BTN3A1	11119	ENSG00000026950			
chr6	26421390	26430587	6p22.1	6p22.2	613592	BTN2A3	Butyrophilin, subfamily 2, member A3	BTN2A3P	54718				
chr6	26440471	26453414	6p22.1	6p22.2	613595	BTN3A3, BTF3	Butyrophilin, subfamily 3, member A3	BTN3A3	10384	ENSG00000111801			
chr6	26457903	26476620	6p22.1	6p22.2	613590	BTN2A1, BTF1	Butyrophilin, subfamily 2, member A1	BTN2A1	11120	ENSG00000112763			
chr6	26499289	26510424	6p22.1	6p22.2	601610	BTN1A1, BTN	Butyrophilin	BTN1A1	696	ENSG00000124557			Btn1a1 (MGI:103118)
chr6	26537497	26537569	6p22.2	6p22.2	615305	TRNAR2	Transfer RNA arginine 2	TRR-ACG1-2	7231				
chr6	26538053	26538125	6p22.2	6p22.2	615306	TRNAV21	Transfer RNA valine 21	TRV-CAC1-6	100189227				
chr6	26634382	26659751	6p22.1	6p22.2	610847	ZNF322A, ZNF489, ZNF322	Zinc finger protein 322A	ZNF322	79692	ENSG00000181315			Zfp322a (MGI:2442566)
chr6	27100000	30500000	6p22.1		612892	STQTL18	Stature quantitative trait locus 18		100302683		associated with rs10946808	{Stature QTL 18}, 612892 (2)	
chr6	27132315	27132795	6p22-p21.3	6p22.1	615044	HIST1H2BJ, H2BJ	Histone gene cluster 1, H2B histone family, member J	HIST1H2BJ	8970	ENSG00000124635			Hist2h2be (MGI:2448415)
chr6	27133037	27133534	6p22-p21.3	6p22.1	615012	HIST1H2AG, H2AG, H2AFP	Histone gene cluster 1, H2A histone family, member 6	HIST1H2AG	8969	ENSG00000196787			Hist1h2an (MGI:2448300)
chr6	27138292	27146857	6p22-p21.3	6p22.1	615045	HIST1H2BK, H2BK	Histone gene cluster 1, H2B histone family, member K	HIST1H2BK	85236	ENSG00000197903			Hist1h2bk (MGI:2448399)
chr6	27139308	27139677	6p21.3	6p22.1	602833	HIST1H4I, H4FM, H4M	Histone 1, H4i	HIST1H4I	8294	ENSG00000276180			Hist1h4h (MGI:2448427)
chr6	27147081	27147561	6p22-p21.3	6p22.1	615013	HIST1H2AH, H2AH	Histone gene cluster 1, H2A histone family, member H	HIST1H2AH	85235	ENSG00000274997			Hist1h2ah (MGI:2448295)
chr6	27235508	27235580	6p22.1	6p22.1	615307	TRNAV12	Transfer RNA valine 12	TRV-AAC5-1	100189014				
chr6	27247700	27256619	6p22-p21.3	6p22.1	607169	PRSS16, TSSP	Protease, serine, 16	PRSS16	10279	ENSG00000112812			Prss16 (MGI:1859181)
chr6	27404009	27473117	6p21.3	6p22.1	602277	ZNF184	Zinc finger protein-184	ZNF184	7738	ENSG00000096654			Zfp184 (MGI:1922244)
chr6	27495813	27495894	6p22.1	6p22.1	189910	TRS-AGA2-4, TRNAS2, TRS2, TRNS	Transfer RNA serine (AGA) 2-4	TRS-AGA2-3	23437				
chr6	27505827	27505908	6p22.1	6p22.1	606172	TRS-TGA4-1, TRNAS3, TRS3	Transfer RNA serine (TGA) 4-1	TRS-TGA4-1	23540				
chr6	27681105	27681177	6p22.1	6p22.1	615308	TRNAV17	Transfer RNA valine 17	TRV-AAC4-1	100189161				
chr6	27684694	27684767	6p22.1	6p22.1	615309	TRNAT15	Transfer RNA threonine 15	TRT-AGT2-2	100189340				
chr6	27777884	27777955	6p23-q12	6p22.1	180620	TRNAM2, TRNAMI2, RNTMI2	tRNA methionine-2	TRX-CAT2-1	7212		2 of 12+ RNTMI genes are on chr. 6		
chr6	27807478	27807930	6p22-p21.3	6p22.1	602800	HIST1H2BL, H2BFC	Histone 1, H2bl	HIST1H2BL	8340	ENSG00000185130			Hist1h2bj (MGI:2448388)
chr6	27808198	27808666	6p22-p21.3	6p22.1	602787	HIST1H2AI, H2AFC	Histone 1, H2ai	HIST1H2AI	8329	ENSG00000196747			
chr6	27810063	27810535	6p22-p21.3	6p22.1	602818	HIST1H3H, H3FK	Histone 1, H3h	HIST1H3H	8357	ENSG00000278828	in minor cluster on 6p		Hist1h3b (MGI:2448319)
chr6	27814301	27814739	6p22-p21.3	6p22.1	602791	HIST1H2AJ, HIST1H2AK, H2AFE	Histone 1, H2aj	HIST1H2AJ	8331	ENSG00000276368			Hist1h2af (MGI:2448309)
chr6	27815043	27815488	6p22-p21.3	6p22.1	602802	HIST1H2BM, H2BFE	Histone 1, H2bm	HIST1H2BM	8342	ENSG00000273703			Hist1h2bn (MGI:2448407)
chr6	27824124	27824479	6p22-p21.3	6p22.1	602826	HIST1H4J, H4FE	Histone 1, H4j	HIST1H4J	8363	ENSG00000197238			Hist1h4f (MGI:2448425)
chr6	27831173	27831526	6p22-p21.3	6p22.1	602825	HIST1H4K, H4FD	Histone 1, H4k	HIST1H4K	8362	ENSG00000273542			Hist1h4j (MGI:2448436)
chr6	27837879	27838338	6p22-p21.3	6p22.1	602788	HIST1H2AK, HIST1H2AI, H2AFD	Histone 1, H2ak	HIST1H2AK	8330	ENSG00000275221			Hist1h2ac (MGI:2448287)
chr6	27838661	27839109	6p22-p21.3	6p22.1	602801	HIST1H2BN, H2BFD	Histone 1, H2bn	HIST1H2BN	8341	ENSG00000233822			Hist1h2bm (MGI:2448404)
chr6	27865328	27865797	6p22-p21.3	6p22.1	602793	HIST1H2AL, H2AFI	Histone 1, H2al	HIST1H2AL	8332	ENSG00000276903			Hist1h2ae (MGI:2448290)
chr6	27866791	27867580	6p22-p21.3	6p22.1	142711	HIST1H1B, H1F5	Histone 1, H1b	HIST1H1B	3009	ENSG00000184357	~2Mb centromeric of H1F1 cluster		
chr6	27871844	27872320	6p22-p21.3	6p22.1	602814	HIST1H3I, H3FF	Histone 1, H3i	HIST1H3I	8354	ENSG00000275379	in cluster of 16 histone genes centromeric of major cluster		Hist1h3e (MGI:2448326)
chr6	27873147	27873510	6p22-p21.3	6p22.1	602831	HIST1H4L, H4FK	Histone 1, H4l	HIST1H4L	8368	ENSG00000275126			Hist1h4n (MGI:4843992)
chr6	27890314	27890791	6p22-p21.3	6p22.1	602817	HIST1H3J, H3FJ	Histone 1, H3j	HIST1H3J	8356	ENSG00000197153	in 2nd cluster on 6p		Hist1h3g (MGI:2145541)
chr6	27892698	27893184	6p22-p21.3	6p22.1	602796	HIST1H2AM, H2AFN	Histone 1, H2am	HIST1H2AM	8336	ENSG00000278677			Hist1h2ad (MGI:2448289)
chr6	27893424	27893890	6p22-p21.3	6p22.1	602808	HIST1H2BO, H2BFN	Histone 1, H2bo	HIST1H2BO	8348	ENSG00000274641			Hist1h2bp (MGI:2448409)
chr6	28080703	28104243	6p21.3	6p22.1	600834	ZNF165, LD65	Zinc finger protein-165	ZNF165	7718	ENSG00000197279			
chr6	28141642	28159471	6p21.3	6p22.1	602240	ZNF192	Zinc finger protein-192	ZKSCAN8	7745	ENSG00000198315			Zkscan8 (MGI:1913815)
chr6	28224701	28233486	6p21.3	6p22.1	602246	ZNF193	Zinc finger protein-193	ZSCAN9	7746	ENSG00000137185			
chr6	28241696	28259257	6p21.33-p21.31	6p22.1	611643	ZKSCAN4, ZNF307	Zinc finger with KRAB and SCAN domains 4	ZKSCAN4	387032	ENSG00000187626			
chr6	28267009	28278223	6p22.1	6p22.1	616474	ZSCAN26, SREZBP	Zinc finger- and SCAN domain-containing protein 26	ZSCAN26	7741	ENSG00000197062			Zscan26 (MGI:3531417)
chr6	28324736	28359156	6p22.3-p22.1	6p22.1	610794	ZNF323	Zinc finger protein 323	ZSCAN31	64288	ENSG00000235109			
chr6	28349912	28369176	6p22.1	6p22.1	612791	ZKSCAN3, ZNF306	Zinc finger protein with KRAB and SCAN domains 3	ZKSCAN3	80317	ENSG00000189298			Zkscan3 (MGI:1919989)
chr6	28378820	28399767	6p22.2-p21.3	6p22.1	603978	ZSCAN12, ZNF96, KIAA0426	Zinc finger- and SCAN domain-containing protein 12	ZSCAN12	9753	ENSG00000158691			Zscan12 (MGI:1099444)
chr6	28503295	28515792	6p22.1	6p22.1	607913	GPX6	Glutathione peroxidase 6	GPX6	257202	ENSG00000198704			Gpx6 (MGI:1922762)
chr6	28526011	28534950	6p22.1	6p22.1	603435	GPX5	Glutathione peroxidase 5 (epididymal)	GPX5	2880	ENSG00000224586			Gpx5 (MGI:104886)
chr6	28568287	28616176	6p22.1	6p22.1	615254	SCAND3, ZBED9, BUSTER4, KIAA1925	SCAN domain-containing protein 3	ZBED9	114821	ENSG00000232040			
chr6	28903001	28923990	6p22	6p22.1	602165	TRIM27, RFP	Tripartite motif-containing 27	TRIM27	5987	ENSG00000204713			Trim27 (MGI:97904)
chr6	29111809	29112883	6p22.1	6p22.1	615016	OR2J3, C3HEXS	Olfactory receptor, family 2, subfamily J, member 3	OR2J3	442186	ENSG00000204701		[C3HEX, ability to smell], 615082 (3), Autosomal dominant	
chr6	29486696	29487955	6p21	6p22.1	607235	MAS1L, MRG	MAS1 oncogene-like	MAS1L	116511	ENSG00000204687			
chr6	29555611	29559924	6p21.3	6p22.1	606050	UBD, FAT10	Ubiquitin D	UBD	10537	ENSG00000213886			Ubd (MGI:1344410)
chr6	29586523	29592505	6p21.3	6p22.1	600578	OR2H3, OLFR2	Olfactory receptor, family 2, subfamily H, member 3 (olfactory receptor 2)	OR2H2	7932	ENSG00000204657	in class I MHC region		Olfr90 (MGI:2177473)
chr6	29602227	29633134	6p21.3	6p22.1	603540	GABBR1, GABABR1	Gamma-aminobutyric acid B receptor 1	GABBR1	2550	ENSG00000204681			Gabbr1 (MGI:1860139)
chr6	29656980	29672371	6p21.3	6p22.1	159465	MOG, NRCLP7	Myelin-oligodendrocyte glycoprotein	MOG	4340	ENSG00000204655	60kb telomeric to HLA-F; mutation identified in 1 NRCLP7 family	?Narcolepsy 7, 614250 (3), Autosomal dominant	Mog (MGI:97435)
chr6	29672391	29681149	6p22.1	6p22.1	612192	ZFP57, TNDM1	Zinc finger protein 57, mouse, homolog of	ZFP57	346171	ENSG00000204644		Diabetes mellitus, transient neonatal, 1, 601410 (3)	Zfp57 (MGI:99204)
chr6	29723339	29740354	6p21.3	6p22.1	143110	HLA-F, HLA-CDA12, HLAF	Major histocompatibility complex, class I, F	HLA-F	3134	ENSG00000204642			Gm11127,Gm7030 (MGI:3779381,MGI:3647514)
chr6	29826966	29831129	6p21.3	6p22.1	142871	HLA-G	HLA-G histocompatibility antigen, class I	HLA-G	3135	ENSG00000204632		{Asthma, susceptibility to}, 600807 (2), Autosomal dominant	H2-M3 (MGI:95915)
chr6	29942469	29945883	6p21.3	6p22.1	142800	HLA-A	Major histocompatibility complex, class I, A	HLA-A	3105	ENSG00000206503		{Hypersensitivity syndrome, carbamazepine-induced, susceptibility to}, 608579 (3)	Gm8909,H2-Bl,H2-Q6,H2-K1,H2-Q7,H2-Q4,H2-Q2,Gm10499,H2-Q1,H2-D1,H2-Q10 (MGI:95935,MGI:95936,MGI:95904,MGI:3702919,MGI:95931,MGI:892004,MGI:95933,MGI:3704134,MGI:95896,MGI:95928,MGI:95929)
chr6	29975114	29978402	6p21.3	6p22.1	615797	HCG9, HCGIX, HCGIX4	HLA complex group 9, noncoding	HCG9	10255				
chr6	30001010	30061188	6p22.1	6p22.1	615714	ZNRD1AS1, TCTEX4, HTEX4	ZNRD1 antisense RNA 1	ZNRD1ASP	80862				
chr6	30061239	30064908	6p22.1	6p22.1	607525	ZNRD1, TCTEX6, HTEX6	Zinc ribbon domain-containing protein 1	ZNRD1	30834	ENSG00000066379			Znrd1 (MGI:1913386)
chr6	30066863	30070332	6p21.3	6p22.1	606670	PPP1R11, TCTEX5	Protein phosphatase 1, regulatory subunit 11	PPP1R11	6992	ENSG00000204619			Ppp1r11 (MGI:1923747)
chr6	30070265	30080624	6p21.3	6p22.1	607524	RNF39, HZFW, HZF, LIRF	Ring finger protein 39	RNF39	80352	ENSG00000204618			Rnf39 (MGI:2156378)
chr6	30102891	30113105	6p23-p21	6p22.1	609316	TRIM31, HCGI	Tripartite motif-containing protein 31	TRIM31	11074	ENSG00000204616			Trim31 (MGI:2385051)
chr6	30135997	30148772	6p22.1	6p22.1	616976	TRIM40, RNF35	Tripartite motif-containing protein 40	TRIM40	135644	ENSG00000204614			Trim40 (MGI:2684881)
chr6	30151938	30163215	6p21.3	6p22.1	605701	RNF9, RFB30, HERF1	RING finger protein-9	TRIM10	10107	ENSG00000204613			Trim10 (MGI:1338757)
chr6	30184452	30213493	6p21.3	6p22.1	600830	ZNF173	Zinc finger protein-173	TRIM26	7726	ENSG00000234127			Trim26 (MGI:1337056)
chr6	30326843	30343728	6p22.1-p21.3	6p22.1	605700	TRIM39, RNF23, TFP	Tripartite motif-containing 39	TRIM39	56658	ENSG00000204599			Trim39 (MGI:1890659)
chr6	30345128	30346857	6p21	6p22.1	612524	RPP21	Ribonuclease P/MRP, 21kD subunit	RPP21	79897	ENSG00000241370			Rpp21 (MGI:1914926)
chr6	30489405	30494204	6p21.3	6p22.1	143010	HLA-E	Major histocompatibility complex, class I, E	HLA-E	3133	ENSG00000204592			H2-T23,H2-T-ps (MGI:95957,MGI:2442805)
chr6	30500000	36600000	6p21.3		107320	ATPLS	Antiphospholipid syndrome, familial		100499532		possible linkage with HLA-DRB1*14	?Antiphospholipid syndrome, familial, 107320 (2), Autosomal dominant	
chr6	30500000	40500000	6p21.3-p21.2		153380	CP20	Lymphocyte cytosolic protein, molecular weight 20kD		7938				
chr6	30500000	36600000	6p21.3		612862	CTEPH1	Pulmonary hypertension, chronic thromboembolic, without deep vein thrombosis, susceptibility to		100302516		associated with DPB1*0202	{Pulmonary hypertension, chronic thromboembolic, without deep vein thrombosis, susceptibility to}, 612862 (2)	
chr6	30500000	36600000	6p21.3		608645	DFNA31	Deafness, autosomal dominant 31	DFNA31	347737		between D6S276 and D6S273	Deafness, autosomal dominant 31, 608645 (2), Autosomal dominant	
chr6	30500000	46200000	6p21		608816	EJM3	Epilepsy, juvenile myoclonic 3		449018			Epilepsy, juvenile myoclonic 3, 608816 (2)	
chr6	30500000	32100000	6p21.33		613024	FL1	Follicular lymphoma, susceptibility to, 1		100306940		associated with rs6457327	{Follicular lymphoma, susceptibility to, 1}, 613024 (2)	
chr6	30500000	36600000	6p21.3		615801	HCG8, HCGVIII	HLA complex group 8						
chr6	30500000	36600000	6p21.3		612735	HLA-DRB3, HLA-DR52	Major histocompatibility complex, class II, DR beta-3	HLA-DRB3	3125				
chr6	30500000	36600000	6p21.3		604519	IBD3	Inflammatory bowel disease 3	IBD3	30829			{Inflammatory bowel disease 3}, 604519 (2), Autosomal dominant	
chr6	30500000	36600000	6p21.3		222100	IDDM1	Insulin-dependent diabetes mellitus-1				linkage or association, with HLA	{Diabetes mellitus, insulin-dependent-1}, 222100 (2), Autosomal recessive	
chr6	30500000	36600000	6p21.3		137100	IGAD1	Immunoglobulin A deficiency	IGAD1	10986			Immunoglobulin A deficiency, 137100 (2), Autosomal recessive, Autosomal dominant, Isolated cases	
chr6	30500000	36600000	6p21.3		146820	IGAT	Immune response to synthetic polypeptide--IRGAT		7927		in B/D segment		
chr6	30500000	36600000	6p21.3		147080	IGLP1	Immune response to synthetic polypeptides-1	IGLP1	7925				
chr6	30500000	36600000	6p21.3		147090	IGLP2	Immune response to synthetic polypeptides-2	IGLP2	7926				
chr6	30500000	36600000	6p21.3		146850	ISCW	Immune suppression to streptococcal antigen		7928		HLA-linked		
chr6	30500000	40500000	6p21.3-p21.2		150270	LAP	Laryngeal adductor paralysis		7939		?linkage to HLA and GLO1	?Laryngeal adductor paralysis, 150270 (2), Autosomal dominant	
chr6	30500000	46200000	6p21		601086	LATD	Laterality defects, autosomal dominant		207115		max lod 2.95 at theta = 0		
chr6	30500000	32100000	6p21.33		612593	LNCR4	Lung cancer susceptibility 4		100271693		associated with rs3117582 and rs3131379	{Lung cancer susceptibility 4}, 612593 (2)	
chr6	30500000	36600000	6p21.3		614692	MBNP	Membranous nephropathy, susceptibility to		101154649			{?Membranous nephropathy, susceptibility to}, 614692 (2)	
chr6	30500000	40500000	6p21.3-p21.2		614644	MPVQTL4	Mean platelet volume quantitative trait locus 4		100887753		associated with rs210134	Mean platelet volume QTL4, 614644 (2)	
chr6	30500000	36600000	6p21.3		607085	MYAS1	Myasthenia gravis with thymus hyperplasia		246750			Myasthenia gravis with thymus hyperplasia, 607085 (2)	
chr6	30500000	36600000	6p21.3		272370	NKS1, EC1	Susceptibility to lysis by alloreactive natural killer cells	NKS1	4819				
chr6	30500000	36600000	6p21.3		161550	NPCA2	Nasopharyngeal carcinoma, susceptibility to, 2		100312951		associated with rs2517713 and rs2975042	{Nasopharyngeal carcinoma, susceptibility to, 2}, 161550 (2)	
chr6	30500000	36600000	6p21.3		613007	PBC2	Biliary cirrhosis, primary, 2		100303716		associated with rs2856683	{Biliary cirrhosis, primary, 2}, 613007 (2)	
chr6	30500000	36600000	6p21.3		600089	PBCA	Pancreatic beta cell, agenesis of		7962		uniparental disomy	?Diabetes mellitus, insulin-dependent, neonatal, 600089 (2), Autosomal recessive	
chr6	30500000	36600000	6p21.3		604809	PBLT	Panbronchiolitis, diffuse					Panbronchiolitis, diffuse, 604809 (2), Multifactorial	
chr6	30500000	36600000	6p21.3		614590	PDCOS	Podoconiosis, susceptibility to		100885774			{Podoconiosis, susceptibility to}, 614590 (2)	
chr6	30500000	46200000	6p21		611185	RLS6	Restless legs syndrome, susceptibility to, 6		100302512		associated with rs9296249 and rs9357271	{Restless legs syndrome 6}, 611185 (2)	
chr6	30500000	36600000	6p21.3		179450	RWS	Ragweed sensitivity		7937		?linkage or association, with HLA	?Ragweed sensitivity, 179450 (2), Autosomal dominant	
chr6	30500000	36600000	6p21.3		193200	VAMAS6	Vitiligo-associated multiple autoimmune disease susceptibility 6		246319		possible second locus on 1p31.3-p32.2	{Vitiligo-associated multiple autoimmune disease susceptibility 6}, 193200 (2), Autosomal recessive	
chr6	30500000	36600000	6p21.3		608710	WG	Wegener granulomatosis		474168			Wegener granulomatosis, 608710 (2)	
chr6	30500000	36600000	6p21.3		153600	WM1	Macroglobulinemia, Waldenstrom, susceptibility to, 1		100188787		linked to HLA	{Macroglobulinemia, Waldenstrom, susceptibility to, 1}, 153600 (2), Autosomal dominant	
chr6	30500000	36600000	6p21.3		603282	ZNF204	Zinc finger protein-204	ZNF204P	7754		?pseudogene		
chr6	30541376	30557593	6p21.3	6p21.33	143024	GNL1, HSR1	Guanine nucleotide-binding protein-like 1	GNL1	2794	ENSG00000204590			Gnl1 (MGI:95764)
chr6	30571392	30591531	6p21.33	6p21.33	603429	ABCF1, ABC50	ATP-binding cassette 50, TNF-alpha stimulated	ABCF1	23	ENSG00000204574			Abcf1 (MGI:1351658)
chr6	30584331	30584416	6p21.33	6p21.33	611619	MIR877, MIRN877	Micro RNA 877	MIR877	100126314				
chr6	30600399	30618606	6p21.3	6p21.33	603771	PPP1R10, PNUTS	Protein phosphatase 1, regulatory subunit 10	PPP1R10	5514	ENSG00000204569			Ppp1r10 (MGI:1289273)
chr6	30617319	30626396	6p21.3	6p21.33	611982	MRPS18B, MRPS18-2	Mitochondrial ribosomal protein S18B	MRPS18B	28973	ENSG00000204568	pseudogenes on chromosomes 1 and 2		Mrps18b (MGI:1914223)
chr6	30626456	30646822	6p21.33	6p21.33	615556	ATAT1, MEC17, C6orf134	Alpha-tubulin acetyltransferase 1	ATAT1	79969	ENSG00000137343			Atat1 (MGI:1913869)
chr6	30653118	30673052	6p21.3	6p21.33	603405	DHX16, DDX16, DBP2, PRP8	DEAH (Asp-Glu-Ala-His) box polypeptide 16	DHX16	8449	ENSG00000204560			Dhx16 (MGI:1916442)
chr6	30676388	30687894	6p21.3	6p21.33	610990	PPP1R18, KIAA1949	Protein phosphatase 1 regulatory subunit 18	PPP1R18	170954	ENSG00000146112			Ppp1r18 (MGI:1923698)
chr6	30699806	30717987	6pter-p21.3	6p21.33	607593	MDC1, NFBD1, KIAA0170	Mediator of DNA damage checkpoint protein 1	MDC1	9656	ENSG00000137337			Mdc1 (MGI:3525201)
chr6	30720200	30725425	6p21.3	6p21.33	191130	TUBB, TUBB5, M40, CDCBM6, CSCSC1	Tubulin, beta polypeptide	TUBB	203068	ENSG00000196230		Cortical dysplasia, complex, with other brain malformations 6, 615771 (3), Autosomal dominant; Symmetric circumferential skin creases, congenital, 1, 156610 (3), Autosomal dominant	Tubb5 (MGI:107812)
chr6	30727708	30742850	6p21.3	6p21.33	606998	FLOT1	Flotillin 1	FLOT1	10211	ENSG00000137312			Flot1 (MGI:1100500)
chr6	30743198	30744549	6p21.3	6p21.33	602996	IER3, DIF2, IEX1, PRG1, GLY96	Immediate early response-3	IER3	8870	ENSG00000137331			Ier3 (MGI:104814)
chr6	30880957	30900155	6p21.3	6p21.33	600408	NEP, EDDR1, NTRK4, TRKE	Neuroepithelial tyrosine kinase	DDR1	780	ENSG00000204580			Ddr1 (MGI:99216)
chr6	30908199	30914102	6p21.3	6p21.33	601760	GTF2H4	General transcription factor IIH, polypeptide 4	GTF2H4	2968	ENSG00000213780			Gtf2h4 (MGI:1338799)
chr6	30914207	30926458	6p21.3	6p21.33	612802	VARS2, KIAA1885, COXPD20	Valyl-tRNA synthetase 2	VARS2	57176	ENSG00000137411		Combined oxidative phosphorylation deficiency 20, 615917 (3), Autosomal recessive	Vars2 (MGI:1916165)
chr6	30940999	30954220	6p21.3	6p21.33	613928	DPCR1, C6orf37	Diffuse panbronchiolitis critical region gene 1	MUCL3	135656	ENSG00000168631			Dpcr1 (MGI:2685476)
chr6	30983707	30989902	6p21.33	6p21.33	616991	MUC21, C6orf205	Mucin 21, cell surface-associated	MUC21	394263	ENSG00000204544			
chr6	31005951	31035401	6p21.3	6p21.33	613917	MUC22, PBMUCL1	Mucin 22	MUC22	100507679	ENSG00000261272			
chr6	31053449	31059889	6p21.3	6p21.33	613918	HCG22, PBMUCL2	HLA complex group 22	HCG22	285834				
chr6	31114830	31140091	6p21.3	6p21.33	613525	SEEK1, C6orf16, PSORS1C1	SEEK1 gene	PSORS1C1	170679	ENSG00000204540			
chr6	31115087	31120474	6p21.3	6p21.33	602593	CDSN, HTSS1, HYPT2, PSS1	Corneodesmosin	CDSN	1041	ENSG00000204539		Hypotrichosis 2, 146520 (3), Autosomal dominant; Peeling skin syndrome 1, 270300 (3), Autosomal recessive	
chr6	31142438	31158237	6p21.3	6p21.33	605310	CCHCR1, HCR, C6orf18	Coiled-coil alpha-helical rod protein 1	CCHCR1	54535	ENSG00000204536	?role in psoriasis		Cchcr1 (MGI:2385321)
chr6	31158523	31164214	6p21.3	6p21.33	600912	TCF19, SC1	Transcription factor-19 (SC1)	TCF19	6941	ENSG00000137310			Tcf19 (MGI:103180)
chr6	31164336	31170692	6p21.3	6p21.33	164177	POU5F1, OTF3, OCT3	Pou domain, class 5, transcription factor 1 (octamer-binding transcription factor 3)	POU5F1	5460	ENSG00000204531	OTF3L on 12; ?related pseudogene on chr.8		Pou5f1 (MGI:101893)
chr6	31268748	31272135	6p21.3	6p21.33	142840	HLA-C, PSORS1	Major histocompatibility complex, class I, C	HLA-C	3107	ENSG00000204525		{HIV-1 viremia, susceptibility to}, 609423 (3); {Psoriasis susceptibility 1}, 177900 (3), Multifactorial	
chr6	31353865	31357244	6p21.3	6p21.33	142830	HLA-B, SPDA1	Major histocompatibility complex, class I, B	HLA-B	3106	ENSG00000234745		{Abacavir hypersensitivity, susceptibility to} (3); {Drug-induced liver injury due to flucloxacillin} (3); {Spondyloarthropathy, susceptibility to, 1}, 106300 (3), Multifactorial; {Stevens-Johnson syndrome, susceptibility to}, 608579 (3); {Synovitis, chronic, susceptibility to} (3); {Toxic epidermal necrolysis, susceptibility to}, 608579 (3)	
chr6	31399783	31415314	6p21.3	6p21.33	600169	MICA	MHC class I polypeptide-related sequence A	MICA	100507436	ENSG00000204520			
chr6	31463179	31465808	6p21.3	6p21.33	604676	HCP5, 6S2650E	Major histocompatibility complex, class I, gene P5-1	HCP5	10866				
chr6	31494880	31511123	6p21.3	6p21.33	602436	MICB	MHC class I polypeptide-related sequence B	MICB	4277	ENSG00000204516			Mill2 (MGI:2179989)
chr6	31528961	31530230	6p21.3	6p21.33	609624	MCCD1	Mitochondrial coiled-coil domain 1	MCCD1	401250	ENSG00000204511			
chr6	31530218	31542474	6p21.3	6p21.33	142560	DDX39B, BAT1, D6S81E	DEAD box polypeptide 39Bipt-1	DDX39B	7919	ENSG00000198563	5 BATs in 160kb segment including also TNFA, TNFB		Ddx39b (MGI:99240)
chr6	31544450	31546847	6p21.3	6p21.33	606853	ATP6V1G2, ATP6G	ATPase, H+ transporting, lysosomal, 13kD, V1 subunit G isoform 2	ATP6V1G2	534	ENSG00000213760			Atp6v1g2 (MGI:1913487)
chr6	31546850	31558828	6p21.3	6p21.33	601022	NFKBIL1	Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1	NFKBIL1	4795	ENSG00000204498		{Rheumatoid arthritis, susceptibility to}, 180300 (3)	Nfkbil1 (MGI:1340031)
chr6	31560549	31574323	6p21.3	6p21.33	153440	LTA, TNFB	Lymphotoxin alpha (formerly tumor necrosis factor beta)	LTA	4049	ENSG00000226979	cen-DR-21OH-C4-BF-C2-TNF-LTA-HLA-B	{Leprosy, susceptibility to, 4}, 610988 (3); {Myocardial infarction, susceptibility to}, 608446 (3); {Psoriatic arthritis, susceptibility to}, 607507 (3)	Lta (MGI:104797)
chr6	31575566	31578335	6p21.3	6p21.33	191160	TNF, TNFA	Tumor necrosis factor (cachectin)	TNF	7124	ENSG00000232810	5'-LTA--TNF-3' in 7kb segment (pter-cen); 210kb from HLA-B	{Asthma, susceptibility to}, 600807 (3), Autosomal dominant; {Dementia, vascular, susceptibility to} (3); {Malaria, cerebral, susceptibility to}, 611162 (3); {Migraine without aura, susceptibility to}, 157300 (3), Autosomal dominant; {Septic shock, susceptibility to} (3)	Tnf (MGI:104798)
chr6	31580557	31582424	6p21.3	6p21.33	600978	LTB, TNFC	Lymphotoxin B	LTB	4050	ENSG00000227507			Ltb (MGI:104796)
chr6	31586178	31588908	6p21.3-p21.1	6p21.33	109170	LST1, D6S49E, B144	Leukocyte-specific transcript 1 (B144 protein)	LST1	7940	ENSG00000204482	10kb 3' from TNFA		
chr6	31588882	31593023	6p21.3	6p21.33	611550	NCR3, 1C7, NKP30, CD337, MALS	Natural cytotoxicity triggering receptor 3	NCR3	259197	ENSG00000204475		{Malaria, mild, susceptibility to}, 609148 (3)	
chr6	31615208	31617024	6p21.3	6p21.33	601833	AIF1, IRT1	Allograft inflammatory factor 1	AIF1	199	ENSG00000204472	part of TNF block		Aif1 (MGI:1343098)
chr6	31620672	31637779	6p21.3	6p21.33	142580	PRRC2A, BAT2, D6S51E	Proline-rich coiled-coil protein 2A	PRRC2A	7916	ENSG00000204469			Prrc2a (MGI:1915467)
chr6	31639027	31660899	6p21.3	6p21.33	142590	BAG6, BAT3, D6S52E	BCL2-associated athanogene 6	BAG6	7917	ENSG00000204463			Bag6 (MGI:1919439)
chr6	31661228	31666282	6p21.3	6p21.33	142610	GPANK1, BAT4, D6S54E	G patch domain- and ankyrin repeats-containing protein 1	GPANK1	7918	ENSG00000204438			Gpank1 (MGI:2148975)
chr6	31665879	31670069	6p21.3	6p21.33	115441	CSNK2B	Casein kinase-2, beta polypeptide	CSNK2B	1460	ENSG00000204435			Csnk2b (MGI:88548)
chr6	31670950	31672449	6p21.3	6p21.33	610433	LY6G5B, G5B	Lymphocyte antigen 6 complex, locus G5B	LY6G5B	58496	ENSG00000240053			Ly6g5b (MGI:2385809)
chr6	31676683	31680372	6p21.3	6p21.33	610434	LY6G5C, G5C	Lymphocyte antigen 6 complex, locus G5C	LY6G5C	80741	ENSG00000204428			Ly6g5c (MGI:2148974)
chr6	31686948	31703359	6p21.3	6p21.33	142620	ABHD16A, BAT5, D6S82E	Abhydrolase domain-containing 16A	ABHD16A	7920	ENSG00000204427			Abhd16a (MGI:99476)
chr6	31711975	31714064	6p21.3	6p21.33	610437	LY6G6E, G6E	Lymphocyte antigen 6 complex, locus G6E	LY6G6E	79136				
chr6	31715355	31717803	6p21.3	6p21.33	606038	LY6G6D, MEGT1, G6D, C6orf23	Lymphocyte antigen 6 complex, locus G6D	LY6G6D	58530	ENSG00000244355			Ly6g6d (MGI:2148931)
chr6	31718647	31721733	6p21.3	6p21.33	610435	LY6G6C, G6C	Lymphocyte antigen 6 complex, locus G6C	LY6G6C	80740	ENSG00000204421			Ly6g6c (MGI:2148930)
chr6	31720556	31726709	6p21.33	6p21.33	606520	G6B, C6orf25, THAMY	G6B protein	MPIG6B	80739	ENSG00000204420	mutation identified in 1 THAMY family	?Thrombocytopenia, anemia, and myelofibrosis, 617441 (3), Autosomal recessive	Mpig6b (MGI:2146995)
chr6	31727036	31730264	6p21.3	6p21.33	604744	DDAH2	Dimethylarginine dimethylaminohydrolase-2	DDAH2	23564	ENSG00000213722			Ddah2 (MGI:1859016)
chr6	31739947	31762677	6p21.33	6p21.33	603382	MSH5, POF13	MutS, E. coli, homolog of, 5	MSH5	4439	ENSG00000204410	mutation identified in POF13 family	?Premature ovarian failure 13, 617442 (3), Autosomal recessive	Msh5 (MGI:1329021)
chr6	31764134	31777330	6p21.33	6p21.33	609693	VWA7, C6orf27, G7C	von Willebrand factor A domain-containing protein 7	VWA7	80737	ENSG00000204396			Vwa7 (MGI:1306798)
chr6	31777517	31795934	6p21.3	6p21.33	192150	VARS, VARS1, G7A, VARS2, NDMSCA	Valyl-tRNA synthetase	VARS	7407	ENSG00000204394		Neurodevelopmental disorder with microcephaly, seizures, and cortical atrophy, 617802 (3), Autosomal recessive	Vars (MGI:90675)
chr6	31797391	31806983	6p21.3	6p21.33	607282	LSM2, C6orf28	LSM2 protein	LSM2	57819	ENSG00000204392			Lsm2 (MGI:90676)
chr6	31809618	31815057	6p21.3	6p21.33	140559	HSPA1L	Heat-shock 70kD protein-like-1	HSPA1L	3305	ENSG00000204390			Hspa1l (MGI:96231)
chr6	31815513	31817941	6p21.3	6p21.33	140550	HSPA1A	Heat-shock 70kD protein-1A	HSPA1A	3303	ENSG00000204389	also 14q22-q24, chr.21, and at least 1 other chromosome		Hspa1a (MGI:96244)
chr6	31827734	31830253	6p21.3	6p21.33	603012	HSPA1B	Heat-shock 70kD protein-1B	HSPA1B	3304	ENSG00000204388			Hspa1a (MGI:96244)
chr6	31834914	31839765	6p21.3	6p21.33	605447	G8	G8 protein	C6orf48	50854	ENSG00000204387			
chr6	31859051	31862931	6p21.3	6p21.33	608272	NEU1, NEU, SIAL1	Neuraminidase 1 (lysosomal sialidase; sialidase 1)	NEU1	4758	ENSG00000204386		Sialidosis, type I, 256550 (3), Autosomal recessive; Sialidosis, type II, 256550 (3), Autosomal recessive	Neu1 (MGI:97305)
chr6	31863191	31879045	6p21.3	6p21.33	606107	SLC44A4, CTL4, C6orf29, DFNA72	Solute carrier family 44, member 4	SLC44A4	80736	ENSG00000204385	mutation identified in 1 DFNA72 family	?Deafness, autosomal dominant 72, 617606 (3), Autosomal dominant	Slc44a4 (MGI:1917379)
chr6	31879758	31897706	6p21.3	6p21.33	604599	EHMT2, GAT8, G9A, NG36	Euchromatic histone-lysine N-methyltransferase 2	EHMT2	10919	ENSG00000204371			Ehmt2 (MGI:2148922)
chr6	31897784	31945673	6p21.3	6p21.33	613927	C2, ARMD14	Complement component-2	C2	717	ENSG00000166278	no crossover with BF	C2 deficiency, 217000 (3), Autosomal recessive; {Macular degeneration, age-related, 14, reduced risk of}, 615489 (3)	C2 (MGI:88226)
chr6	31945943	31952083	6p21.3	6p21.33	138470	CFB, BF, GBG, AHUS4, ARMD14, CFBD	Complement factor B	CFB	629	ENSG00000243649	mutation identified in 1 CFBD family	?Complement factor B deficiency, 615561 (3); {Hemolytic uremic syndrome, atypical, susceptibility to, 4}, 612924 (3), Autosomal dominant; {Macular degeneration, age-related, 14, reduced risk of}, 615489 (3)	Cfb (MGI:105975)
chr6	31952086	31959086	6p21.3	6p21.33	154040	RDBP	RD RNA-binding protein	NELFE	7936	ENSG00000204356	between C4 and BF		Nelfe (MGI:102744)
chr6	31958803	31969851	6p21	6p21.33	600478	SKIV2L, SKI2, SKI2W, THES2	Superkiller viralicidic activity 2, S. cerevisiae, homolog, like	SKIV2L	6499	ENSG00000204351		Trichohepatoenteric syndrome 2, 614602 (3), Autosomal recessive	Skiv2l (MGI:1099835)
chr6	31969810	31972289	6p21.3	6p21.33	605996	DOM3Z	DOM3, C. elegans, homolog of, Z	DXO	1797	ENSG00000204348			Dxo (MGI:1890444)
chr6	31971174	31981445	6p21.3	6p21.33	604977	STK19	Serine/threonine protein kinase 19	STK19	8859	ENSG00000204344			Stk19 (MGI:1860085)
chr6	31982056	32002679	6p21.3	6p21.33	120810	C4A, C4S, C4AD	Complement component-4A	C4A	720	ENSG00000244731	order:  HLA-B, C2, BF, C4A, C4B, CYP21, DR	[Blood group, Rodgers], 614374 (3); C4a deficiency, 614380 (3), Autosomal recessive	C4b,C4a (MGI:98320,MGI:88228)
chr6	32014794	32035417	6p21.3	6p21.33	120820	C4B, C4F, C4BD	Complement component-4B	C4B	721	ENSG00000224389	10kb from C4S	C4B deficiency, 614379 (3)	C4b,C4a (MGI:98320,MGI:88228)
chr6	32038315	32041669	6p21.3	6p21.33	613815	CYP21A2, CYP21, CA21H	Cytochrome P450, subfamily XXIA, polypeptide 2 (steroid 21-hydroxylase)	CYP21A2	1589	ENSG00000231852	linked to C2, C4, BF; 2 loci, A and B; only B active; pseudogene CYP21P contiguous on 6p	Adrenal hyperplasia, congenital, due to 21-hydroxylase deficiency, 201910 (3), Autosomal recessive; Hyperandrogenism, nonclassic type, due to 21-hydroxylase deficiency, 201910 (3), Autosomal recessive	Cyp21a1 (MGI:88591)
chr6	32041154	32109373	6p21.3	6p21.33-p21.32	600985	TNXB, TNX, TNXB1, TNXBS, TNXB2, EDSCLL, VUR8	Tenascin XB	TNXB	7148	ENSG00000168477		Ehlers-Danlos syndrome, classic-like, 606408 (3), Autosomal recessive; Vesicoureteral reflux 8, 615963 (3), Autosomal dominant	Tnxb (MGI:1932137)
chr6	32115267	32128239	6p21.3	6p21.32	600984	ATF6B, CREBL1	Activating transcription factor 6 beta	ATF6B	1388	ENSG00000213676			Atf6b (MGI:105121)
chr6	32128706	32130289	6p21.3	6p21.32	617076	FKBPL, DIR1, WISP39	FK506-binding protein-like	FKBPL	63943	ENSG00000204315			Fkbpl (MGI:1932127)
chr6	32153451	32163680	6p21.3	6p21.32	603298	PPT2	Palmitoyl-protein thioesterase-2	PPT2	9374	ENSG00000221988			Ppt2 (MGI:1860075)
chr6	32164604	32168284	6p21.32	6p21.32	609897	EGFL8	Epidermal growth factor-like 8	EGFL8	80864	ENSG00000241404			Egfl8 (MGI:1932094)
chr6	32168205	32178110	6p21.3	6p21.32	603099	AGPAT1, LPAATA	1-acylglycerol-3-phosphate O-acyltransferase 1 (lysophosphatidic acid acyltransferase-alpha)	AGPAT1	10554	ENSG00000204310			Agpat1 (MGI:1932075)
chr6	32178384	32180792	6p21.3	6p21.32	602677	RNF5, RING5	RING finger protein-5	RNF5	6048	ENSG00000204308			Rnf5 (MGI:1860076)
chr6	32180967	32184379	6p21.3	6p21.32	600214	AGER, RAGE	Advanced glycosylation end product-specific receptor	AGER	177	ENSG00000204305	at junction of classes II, III MHC		Ager (MGI:893592)
chr6	32184732	32190185	6p21.3	6p21.32	176311	PBX2, HOX12, G17	Pre-B-cell leukemia transcription factor-2	PBX2	5089	ENSG00000204304			Pbx2 (MGI:1341793)
chr6	32194842	32224066	6p21.3	6p21.32	164951	NOTCH4, INT3	Notch, Drosophila, homolog of, 4	NOTCH4	4855	ENSG00000204301			Notch4 (MGI:107471)
chr6	32393338	32408878	6p21.3	6p21.32	606000	BTNL2, SS2	Butyrophilin-like protein 2	BTNL2	56244	ENSG00000204290		{Sarcoidosis, susceptibility to, 2}, 612387 (3), Autosomal dominant	Btnl2 (MGI:1859549)
chr6	32439841	32445045	6p21.3	6p21.32	142860	HLA-DRA	Major histocompatibility complex, class II, DR alpha	HLA-DRA	3122	ENSG00000204287	1 alpha, 3 different beta chains		H2-Ea-ps (MGI:95900)
chr6	32517342	32530315	6p21.3	6p21.32	604776	HLA-DRB5	Major histocompatibility complex, class II, DR beta-5	HLA-DRB5	3127	ENSG00000198502			H2-Eb1 (MGI:95901)
chr6	32578768	32589835	6p21.3	6p21.32	142857	HLA-DRB1, SS1	Major histocompatibility complex, class II, DR beta-1	HLA-DRB1	3123	ENSG00000196126		{Multiple sclerosis, susceptibility to, 1}, 126200 (3), Multifactorial; {Sarcoidosis, susceptibility to, 1}, 181000 (3), Autosomal dominant	
chr6	32637405	32654845	6p21.3	6p21.32	146880	HLA-DQA1, CELIAC1	Major histocompatibility complex, class II, DQ alpha-1	HLA-DQA1	3117	ENSG00000196735		{Celiac disease, susceptibility to}, 212750 (3), Autosomal recessive, Multifactorial	H2-Aa (MGI:95895)
chr6	32659463	32666688	6p21.3	6p21.32	604305	HLA-DQB1, CELIAC1	Major histocompatibility complex, class II, DQ beta-1	HLA-DQB1	3119	ENSG00000179344		{Celiac disease, susceptibility to}, 212750 (3), Autosomal recessive, Multifactorial; {Creutzfeldt-Jakob disease, variant, resistance to}, 123400 (3), Autosomal dominant; {Multiple sclerosis, susceptibility to, 1}, 126200 (3), Multifactorial	H2-Ab1 (MGI:103070)
chr6	32741385	32746886	6p21.32	6p21.32	613503	HLA-DQA2, HLA-DXA	Major histocompatibility complex, class II, DQ alpha-2	HLA-DQA2	3118	ENSG00000237541			
chr6	32756093	32763552	6p21.32	6p21.32	615161	HLA-DQB2, HLA-DXB	Major histocompatibility complex, class II, DQ beta-2	HLA-DQB2	3120	ENSG00000232629			
chr6	32812762	32817047	6p21.3	6p21.32	600629	HLA-DOB	Major histocompatibility complex, class II, DO beta	HLA-DOB	3112	ENSG00000241106			H2-Ob (MGI:95925)
chr6	32821832	32838822	6p21.3	6p21.32	170261	TAP2, ABCB3, PSF2, RING11	Transporter 2, ATP-binding cassette, subfamily B	TAP2	6891	ENSG00000204267	tel-TAP1-LMP2-LMP1-TAP2-cen	Bare lymphocyte syndrome, type I, due to TAP2 deficiency, 604571 (3), Autosomal recessive; Wegener-like granulomatosis (3)	Tap2 (MGI:98484)
chr6	32840716	32844934	6p21.3	6p21.32	177046	PSMB8, LMP7, RING10, JMP, NKJO, ALDD	Proteasome subunit, beta type, 8 (large multifunctional protease-7)	PSMB8	5696	ENSG00000204264	between TAP1 and TAP2	Autoinflammation, lipodystrophy, and dermatosis syndrome, 256040 (3), Autosomal recessive	Psmb8 (MGI:1346527)
chr6	32845208	32853970	6p21.3	6p21.32	170260	TAP1, ABCB2, RING4, PSF1	Transporter 1, ATP-binding cassette, subfamily B	TAP1	6890	ENSG00000168394	~7kb telomeric to TAP2	Bare lymphocyte syndrome, type I, 604571 (3), Autosomal recessive	Tap1 (MGI:98483)
chr6	32854160	32859850	6p21.3	6p21.32	177045	PSMB9, LMP2, RING12	Proteasome subunit, beta type, 9	PSMB9	5698	ENSG00000240065	just centromeric to TAP1		Psmb9 (MGI:1346526)
chr6	32934628	32941069	6p21.3	6p21.32	142856	HLA-DMB, RING7	Major histocompatibility complex, class II, DM beta	HLA-DMB	3109	ENSG00000242574			H2-DMb2,H2-DMb1 (MGI:95922,MGI:95923)
chr6	32948613	32953121	6p21.3	6p21.32	142855	HLA-DMA, RING6	Major histocompatibility complex, class II, DM alpha	HLA-DMA	3108	ENSG00000204257			H2-DMa (MGI:95921)
chr6	32968659	32981504	6p21.3	6p21.32	601540	BRD2, RING3, FSRG1	Bromodomain-containing protein 2	BRD2	6046	ENSG00000204256	between HLA-DNA and HLA-DMA		Brd2 (MGI:99495)
chr6	33004181	33009611	6p21.3	6p21.32	142930	HLA-DNA	Major histocompatibility complex, class II, DN alpha	HLA-DOA	3111	ENSG00000204252			H2-Oa (MGI:95924)
chr6	33064568	33080777	6p21.3	6p21.32	142880	HLA-DPA1, HLADP	Major histocompatibility complex, class II, DP alpha-1	HLA-DPA1	3113	ENSG00000231389	2 different alpha, 2 different beta chains		
chr6	33075925	33089695	6p21.3	6p21.32	142858	HLA-DPB1	Major histocompatibility complex, class II, DP beta-1	HLA-DPB1	3115	ENSG00000223865		{Beryllium disease, chronic, susceptibility to} (3)	
chr6	33162691	33193008	6p21.3	6p21.32	120290	COL11A2, DFNA13, DFNB53, FBCG2, OSMEDA, OSMEDB	Collagen XI, alpha-2 polypeptide	COL11A2	1302	ENSG00000204248	45kb centromeric of HLA-DPB2; 3'--5'-cen	Deafness, autosomal dominant 13, 601868 (3), Autosomal dominant; Deafness, autosomal recessive 53, 609706 (3), Autosomal recessive; Fibrochondrogenesis 2, 614524 (3), Autosomal recessive, Autosomal dominant; Otospondylomegaepiphyseal dysplasia, autosomal dominant, 184840 (3), Autosomal dominant; Otospondylomegaepiphyseal dysplasia, autosomal recessive, 215150 (3), Autosomal recessive	Col11a2 (MGI:88447)
chr6	33193584	33200990	6p21.3	6p21.32	180246	RXRB	Retinoid X receptor, beta	RXRB	6257	ENSG00000204231			Rxrb (MGI:98215)
chr6	33200825	33204436	6p21.3	6p21.32	601416	SLC39A7, D6S2244E, HKE4	Solute carrier family 39 (zinc transporter), member 7 (Ke4 gene, mouse, homolog of)	SLC39A7	7922	ENSG00000112473			Slc39a7 (MGI:95909)
chr6	33204636	33206830	6p21.3	6p21.32	601417	HSD17B8, FABGL, D6S2245E, HKE6	Hydroxysteroid (17-beta) dehydrogenase 8 (Ke6 gene, mouse, homolog of)	HSD17B8	7923	ENSG00000204228			H2-Ke6 (MGI:95911)
chr6	33207834	33207943	6p21.32	6p21.32	611500	MRI219-1, MIRN219-1	Micro RNA 219-1	MIR219A1	407002				
chr6	33208508	33212721	6p21.3	6p21.32	602045	RING1, RNF1	RING finger protein-1	RING1	6015	ENSG00000204227			Ring1 (MGI:1101770)
chr6	33250271	33271964	6p21.3	6p21.32	603443	VPS52, SACM2L	Vacuolar protein sorting 52 homolog (S. cerevisiae)	VPS52	6293	ENSG00000223501			Vps52 (MGI:1330304)
chr6	33272074	33276503	6p21.3	6p21.32	180473	RPS18	Ribosomal protein S18	RPS18	6222	ENSG00000231500			Rps18 (MGI:98146)
chr6	33277139	33278824	6p21.3	6p21.32	603095	B3GALT4	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 4	B3GALT4	8705	ENSG00000235863			B3galt4 (MGI:1859517)
chr6	33278206	33289526	6p21.3	6p21.32	611440	WDR46, BING4	WD repeat-containing protein 46	WDR46	9277	ENSG00000227057			Wdr46 (MGI:1931871)
chr6	33291653	33299387	6p21.3	6p21.32	602306	RAB2L	RAB2, member RAS oncogene family-like	RGL2	5863	ENSG00000237441			Rgl2 (MGI:107483)
chr6	33299693	33314386	6p21.3	6p21.32	601962	TAPBP, TPSN	TAP-binding protein (tapasin)	TAPBP	6892	ENSG00000231925		Bare lymphocyte syndrome, type I, 604571 (3), Autosomal recessive	Tapbp (MGI:1201689)
chr6	33314404	33317941	6p21.3	6p21.32	611439	ZBTB22, BING1	Zinc finger- and BTB domain-containing protein 22	ZBTB22	9278	ENSG00000236104			Zbtb22 (MGI:1931870)
chr6	33318557	33323015	6p21.3	6p21.32	603186	DAXX	Death-associated protein 6	DAXX	1616	ENSG00000204209			Daxx (MGI:1197015)
chr6	33391523	33410225	6p21.3	6p21.32	603763	KIFC1, KNSL2, HSET	Kinesin family member C1	KIFC1	3833	ENSG00000237649			Kifc1,Kifc5b (MGI:2137414,MGI:109596)
chr6	33410750	33416452	6p21.3	6p21.32	602881	PHF1	PHD finger protein-1	PHF1	5252	ENSG00000112511			Phf1 (MGI:98647)
chr6	33416541	33418287	6p21.32	6p21.32	616953	CUTA, ACHAP, C6orf82	CutA, E. coli, homolog of	CUTA	51596	ENSG00000112514			Cuta (MGI:1914925)
chr6	33420069	33453688	6p21.3	6p21.32	603384	SYNGAP1, MRD5	Synaptic Ras GTPase activating protein 1	SYNGAP1	8831	ENSG00000197283		Mental retardation, autosomal dominant 5, 612621 (3), Autosomal dominant	Syngap1 (MGI:3039785)
chr6	33500000	36600000	6p21.31		612893	STQTL19	Stature quantitative trait locus 19		100302684		associated with rs1776897	{Stature QTL 19}, 612893 (2)	
chr6	33572545	33580295	6p21.3-p21.2	6p21.31	600516	BAK1	BCL2-antagonist/killer 1	BAK1	578	ENSG00000030110	centromeric to MHC region		Bak1 (MGI:1097161)
chr6	33621332	33696573	6pter-p21	6p21.31	147267	ITPR3	Inositol 1,4,5-triphosphate receptor, type 3	ITPR3	3710	ENSG00000096433		{Diabetes, type 1, susceptibility to}, 222100 (2), Autosomal recessive	Itpr3 (MGI:96624)
chr6	33696760	33711750	6p21.31	6p21.31	614461	UQCC2, C6orf126, M19	Ubiquinol-cytochrome c reductase complex assembly factor 2	UQCC2	84300	ENSG00000137288	mutation identified in 1 MC3DN7 patient	?Mitochondrial complex III deficiency, nuclear type 7, 615824 (3), Autosomal recessive	Uqcc2 (MGI:1914517)
chr6	33721475	33755670	6p21	6p21.31	606993	IHPK3, INSP6K3, IP6K3	Inositol hexaphosphate kinase 3	IP6K3	117283	ENSG00000161896	pseudogene on 6p24.1		Ip6k3 (MGI:3045325)
chr6	33771212	33794273	6p21.31	6p21.31	616312	LEMD2, NET25, CTRCT42	LEM domain-containing protein 2	LEMD2	221496	ENSG00000161904		Cataract 46, juvenile-onset, 212500 (3), Autosomal recessive	Lemd2 (MGI:2385045)
chr6	33794671	33804015	6p21.3	6p21.31	158270	MLN	Motilin	MLN	4295	ENSG00000096395			
chr6	34018642	34155621	6p21.3	6p21.31	604100	GRM4, MGLUR4	Glutamate receptor, metabotropic, 4	GRM4	2914	ENSG00000124493			Grm4 (MGI:1351341)
chr6	34236799	34246230	6p21	6p21.31	600701	HMGA1, HMGIY	High-mobility group AT-hook 1	HMGA1	3159	ENSG00000137309		{Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3), Autosomal dominant	Hmga1,Hmga1b (MGI:96161,MGI:96160)
chr6	34246379	34249107	6p21.3	6p21.31	611419	C6orf1, LBH	Chromosome 6, open reading frame 1	SMIM29	221491	ENSG00000186577	opposite strand, tail-to-tail with HMGA1		
chr6	34417453	34426124	6p	6p21.31	603632	RPS10, DBA9	Ribosomal protein S10	RPS10	6204	ENSG00000124614		Diamond-Blackfan anemia 9, 613308 (3), Autosomal dominant	Rps10 (MGI:1914347)
chr6	34466060	34536261	6p21	6p21.31	606512	PACSIN1, KIAA1379	Protein kinase C and casein kinase substrate in neurons 1	PACSIN1	29993	ENSG00000124507			Pacsin1 (MGI:1345181)
chr6	34537799	34556332	6p21.3	6p21.31	608144	SPDEF, PDEF	SAM pointed domain-containing ETS transcription factor	SPDEF	25803	ENSG00000124664			Spdef (MGI:1353422)
chr6	34587279	34696849	6p21.31	6p21.31	612217	C6orf106	Chromosome 6 open reading frame 106	C6orf106	64771	ENSG00000196821			D17Wsu92e (MGI:106281)
chr6	34757093	34773856	6p21.31	6p21.31	603522	SNRPC	Small nuclear ribonucleoprotein polypeptide C	SNRPC	6631	ENSG00000124562			
chr6	34877777	34888070	6p21.31	6p21.31	600772	TAF11, TAF2I, TAFII28	TAF11 RNA polymerase II, TATA box-binding protein-associated factor, 28kD	TAF11	6882	ENSG00000064995			Taf11 (MGI:1916026)
chr6	34889260	35097991	6p21.3	6p21.31	608994	ANKS1, ODIN, KIAA0229	Ankyrin repeat and sterile alpha motif domains-containing protein 1	ANKS1A	23294	ENSG00000064999			Anks1 (MGI:2446180)
chr6	35118070	35141409	6p21.3-p21.2	6p21.31	186982	TCP11, D6S230E	T-complex homolog tcp-11	TCP11	6954	ENSG00000124678	expressed only in testis at same time as ZNF76 (day 20 after birth)		Tcp11 (MGI:98544)
chr6	35214046	35253078	6p21.3	6p21.31	614708	SCUBE3	Signal peptide-, CUB domain-,  and EGF-like domains-containing protein 3	SCUBE3	222663	ENSG00000146197			Scube3 (MGI:3045253)
chr6	35259472	35295986	6p21.3-p21.2	6p21.31	194549	ZNF76, D6S229E	Zinc finger protein-76 (expressed in testis)	ZNF76	7629	ENSG00000065029	same 300kb fragment as TCP11		Zfp523 (MGI:2687278)
chr6	35297817	35321770	6p21.31	6p21.31	610094	DEF6, IBP, SLAT	Def6, mouse, homolog of	DEF6	50619	ENSG00000023892			Def6 (MGI:1346328)
chr6	35342557	35428190	6p21.2-p21.1	6p21.31	600409	PPARD, NUC1	Peroxisome proliferative activated receptor, delta	PPARD	5467	ENSG00000112033			Ppard (MGI:101884)
chr6	35452338	35467105	6p22-p21	6p21.31	613976	FANCE, FACE	Fanconi anemia, complementation group E gene	FANCE	2178	ENSG00000112039		Fanconi anemia, complementation group E, 600901 (3), Autosomal recessive	Fance (MGI:1920025)
chr6	35468400	35470780	6p21.31	6p21.31	615660	RPL10A, CSA19	Ribosomal protein L10A	RPL10A	4736	ENSG00000198755			Rpl10a (MGI:1343877)
chr6	35473596	35497083	6p21.3	6p21.31	603170	TEAD3, TEF5, TEAD5	TEA domain family member 3 (transcriptional enhancer factor 5)	TEAD3	7005	ENSG00000007866			Tead3 (MGI:109241)
chr6	35497873	35512937	6p21.3	6p21.31	602280	TULP1, RP14, LCA15	Tubby-like protein-1	TULP1	7287	ENSG00000112041		Leber congenital amaurosis 15, 613843 (3), Autosomal recessive; Retinitis pigmentosa 14, 600132 (3), Autosomal recessive	Tulp1 (MGI:109571)
chr6	35573584	35728582	6p21.3-p21.2	6p21.31	602623	FKBP5, FKBP51	FK506-binding protein 5	FKBP5	2289	ENSG00000096060		{Major depressive disorder and accelerated response to antidepressant drug treatment}, 608516 (3)	Fkbp5 (MGI:104670)
chr6	35794981	35797343	6pter-p21.1	6p21.31	120105	CLPS	Colipase, pancreatic	CLPS	1208	ENSG00000137392			Clps (MGI:88421)
chr6	35805293	35824074	6p21.3	6p21.31	609427	LHFPL5, TMHS, DFNB67	LHFP-like protein 5	LHFPL5	222662	ENSG00000197753		Deafness, autosomal recessive 67, 610265 (3), Autosomal recessive	Lhfpl5 (MGI:1915382)
chr6	35833033	35921179	6p21.31	6p21.31	601939	SRPK1	Protein kinase, serine/arginine-specific, 1	SRPK1	6732	ENSG00000096063			Srpk1 (MGI:106908)
chr6	35943513	36024635	6p21.31	6p21.31	608480	SLC26A8, TAT1, SPGF3	Solute carrier family 26 (sulfate transporter), member 8	SLC26A8	116369	ENSG00000112053		Spermatogenic failure 3, 606766 (3), Autosomal dominant	Slc26a8 (MGI:2385046)
chr6	36027676	36122963	6p21.3-p21.2	6p21.31	600289	MAPK14, CSBP1	Mitogen-activated protein kinase 14 (cytokine suppressive anti-inflammatory drug binding protein 1)	MAPK14	1432	ENSG00000112062			Mapk14 (MGI:1346865)
chr6	36196772	36232789	6p21.31	6p21.31	616856	BRPF3, KIAA1286	Bromodomain- and PHD finger-containing protein 3	BRPF3	27154	ENSG00000096070			Brpf3 (MGI:2146836)
chr6	36242522	36313954	6p21.31	6p21.31	612121	PNPLA1, ARCI10	Patatin-like phospholipase domain-containing protein 1	PNPLA1	285848	ENSG00000180316		Ichthyosis, congenital, autosomal recessive 10, 615024 (3), Autosomal recessive	Pnpla1 (MGI:3617850)
chr6	36354220	36387799	6p21	6p21.31	605255	ETV7, TEL2, TELB	ETS variant gene 7	ETV7	51513	ENSG00000010030			
chr6	36442766	36491142	6p21.31	6p21.31	615932	KCTD20	Potassium channel tetramerization domain-containing protein 20	KCTD20	222658	ENSG00000112078			Kctd20 (MGI:1914239)
chr6	36493881	36547515	6p21	6p21.31	606964	STK38, NDR	Serine/threonine protein kinase 38	STK38	11329	ENSG00000112079			Stk38 (MGI:2442572)
chr6	36594312	36604466	6p21	6p21.3-p21.2	603364	SRSF3, SFRS3, SRP20	Splicing factor, arginine/serine-rich, 3	SRSF3	6428	ENSG00000112081			Srsf3 (MGI:98285)
chr6	36600000	40500000	6p21.2		615080	AD17	Alzheimer disease 17		101290498		associated with rs75932628T	Alzheimer disease 17, 615080 (2)	
chr6	36600000	40500000	6p21.2		616343	TP53COR1	Tumor protein p53 pathway corepressor 1, noncoding	TP53COR1	102800311				
chr6	36673620	36675125	6p21.2	6p21.2	617179	PANDAR	Promoter of CDKN1A antisense DNA damage-activated RNA	PANDAR	101154753				
chr6	36676459	36687338	6p21.2	6p21.2	116899	CDKN1A, WAF1, CIP1, CDKN1	Cyclin-dependent kinase inhibitor 1A (p21, Cip1)	CDKN1A	1026	ENSG00000124762			Cdkn1a (MGI:104556)
chr6	36740772	36839443	6p21	6p21.2	604209	CPNE5, CPN5	Copine V	CPNE5	57699	ENSG00000124772			Cpne5 (MGI:2385908)
chr6	36834885	36928963	6p21.2	6p21.2	616642	C6orf89, BRAP, AMFION	Bombesin receptor-activated protein	C6orf89	221477	ENSG00000198663			BC004004 (MGI:2136782)
chr6	36854828	36875023	6p21.1	6p21.2	601301	PPIL1, CYPL1	Peptidylprolyl isomerase (cyclophilin)-like 1	PPIL1	51645	ENSG00000137168	previously assigned to chr.2		Ppil1 (MGI:1916066)
chr6	36968134	36987170	6p21.2	6p21.2	610449	MTCH1, PSAP	Mitochondrial carrier homolog 1	MTCH1	23787	ENSG00000137409			Mtch1 (MGI:1929261)
chr6	37005646	37029071	6p21.2	6p21.2	605091	FGD2	FYVE, RhoGEF, and PH domain-containing protein 2	FGD2	221472	ENSG00000146192			Fgd2 (MGI:1347084)
chr6	37170145	37175427	6p21.2	6p21.2	164960	PIM1	Oncogene PIM1	PIM1	5292	ENSG00000137193			Pim1 (MGI:97584)
chr6	37257703	37332969	6p21.2	6p21.2	616880	TBC1D22B, C6orf197	TBC1 domain family, member 22B	TBC1D22B	55633	ENSG00000065491			Tbc1d22b (MGI:2681867)
chr6	37353971	37394737	6p21.3	6p21.2	611685	RNF8, KIAA0646	Ring finger protein 8	RNF8	9025	ENSG00000112130			Rnf8 (MGI:1929069)
chr6	37433130	37482843	6p21.2	6p21.2	616189	CMTR1, MTR1, ISG95, FTSJD2, KIAA0082	CAP methyltransferase 1	CMTR1	23070	ENSG00000137200			Cmtr1 (MGI:1921407)
chr6	37632507	37697989	6p21	6p21.2	609626	MDGA1, GPIM	MAM domain-containing glycosylphosphatidylinositol anchor 1	MDGA1	266727	ENSG00000112139			Mdga1 (MGI:1922012)
chr6	37819530	38154623	6pter-p22.3	6p21.2	607455	ZFAND3, TEX27	Zinc finger AN1 domain-containing protein 3	ZFAND3	60685	ENSG00000156639			Zfand3 (MGI:1096572)
chr6	38168450	38640540	6p21	6p21.2	611237	BTBD9, KIAA1880	BTB/POZ domain-containing protein 9	BTBD9	114781	ENSG00000183826			Btbd9 (MGI:1916625)
chr6	38675924	38703175	6p21.3-p21.2	6p21.2	138750	GLO1	Glyoxalase I	GLO1	2739	ENSG00000124767	~3cM proximal to HLA		Glo1 (MGI:95742)
chr6	38715328	39030797	6p21	6p21.2	603337	DNAH8, HDHC9	Dynein, axonemal, heavy chain 8	DNAH8	1769	ENSG00000124721			Dnah8 (MGI:107714)
chr6	39048780	39091302	6p21	6p21.2	138032	GLP1R	Glucagon-like peptide 1 receptor	GLP1R	2740	ENSG00000112164			Glp1r (MGI:99571)
chr6	39188970	39229474	6p21	6p21.2	603493	KCNK5, TASK2	Potassium channel, subfamily K, member 5	KCNK5	8645	ENSG00000164626			Kcnk5 (MGI:1336175)
chr6	39299000	39314460	6p21.2-p21.1	6p21.2	607370	KCNK17, TASK4, TALK2	Potassium channel, subfamily K, member 17	KCNK17	89822	ENSG00000124780			
chr6	39314565	39322991	6p21.2-p21.1	6p21.2	607369	KCNK16, TALK1	Potassium channel, subfamily K, member 16	KCNK16	83795	ENSG00000095981			Kcnk16 (MGI:1921821)
chr6	39329989	39725422	6p21	6p21.2	613919	KIF6	Kinesin family member 6	KIF6	221458	ENSG00000164627			Kif6 (MGI:1098238)
chr6	39792365	39904876	6p21.2	6p21.2	606627	DAAM2, KIAA0381	Dishevelled-associated activator of morphogenesis 2	DAAM2	23500	ENSG00000146122			Daam2 (MGI:1923691)
chr6	39904257	39934550	6p21.3	6p21.2	603707	MOCS1, MOCODA	Molybdenum cofactor synthesis-1	MOCS1	4337	ENSG00000124615		Molybdenum cofactor deficiency A, 252150 (3), Autosomal recessive	
chr6	40378284	40379898	6p21.2-p21.1	6p21.2	615676	TDRG1, LINC00532	Testis development-related gene 1, noncoding	TDRG1	732253				
chr6	40391588	40587463	6p21.2	6p21.2-p21.1	612808	LRFN2, SALM1, KIAA1246	Leucine-rich repeat and fibronectin type III domain-containing protein 2	LRFN2	57497	ENSG00000156564			Lrfn2 (MGI:1917780)
chr6	40500000	53000000	6p21.1-p12.2		607498	MGR3	Migraine with or without aura, susceptibility to, 3		337892		lod 5.78 at D6S452	{Migraine with or without aura, susceptibility to, 3}, 607498 (2), Autosomal dominant	
chr6	40500000	46200000	6p21.1		132100	PPR1	Photoparoxysmal response 1		100528023		max lod at D6S2427	Photoparoxysmal response 1, 132100 (2), Autosomal dominant	
chr6	41026900	41039198	6p21.1	6p21.1	617464	UNC5CL, ZUD	Unc5 family C-terminal-like protein	UNC5CL	222643	ENSG00000124602			Unc5cl (MGI:1923839)
chr6	41053200	41064890	6p21	6p21.1	604797	APOBEC2	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide 2	APOBEC2	10930	ENSG00000124701			Apobec2 (MGI:1343178)
chr6	41066787	41097786	6p21.2	6p21.1	614393	OARD1, C6orf130	O-acyl-ADP-ribose deacylase 1	OARD1	221443	ENSG00000124596			Oard1 (MGI:2146818)
chr6	41072967	41102406	6p21.3	6p21.1	189903	NFYA	Transcription factor NF-Y, A subunit	NFYA	4800	ENSG00000001167			Nfya (MGI:97316)
chr6	41149096	41158449	6p21.1	6p21.1	609714	TREML1, TLT1	Triggering receptor expressed on myeloid cells-like protein 1	TREML1	340205	ENSG00000161911			Treml1 (MGI:1918576)
chr6	41158505	41163185	6p21.2	6p21.1	605086	TREM2	Triggering receptor expressed on myeloid cells 2	TREM2	54209	ENSG00000095970		Nasu-Hakola disease, 221770 (3), Autosomal recessive	Trem2 (MGI:1913150)
chr6	41189748	41201232	6p21.1	6p21.1	609715	TREML2, TLT2	Triggering receptor expressed on myeloid cells-like protein 2	TREML2	79865	ENSG00000112195			Treml2 (MGI:2147038)
chr6	41208553	41217946	6p21.1	6p21.1	609716	TREML3, TLT3	Triggering receptor expressed on myeloid cells-like protein 3	TREML3P	340206				
chr6	41228286	41239385	6p21	6p21.1	614664	TREML4, TLT4	Triggering receptor expressed on myeloid cells-like protein 4	TREML4	285852	ENSG00000188056			
chr6	41267384	41286744	6p21.1	6p21.1	605085	TREM1	Triggering receptor expressed on myeloid cells 1	TREM1	54210	ENSG00000124731			Trem1 (MGI:1930005)
chr6	41335619	41350886	6p21.1	6p21.1	604531	NCR2, LY95, NKP44	Natural cytotoxicity triggering receptor 2 (lymphocyte antigen 95, mouse, homolog of)	NCR2	9436	ENSG00000096264			
chr6	41546425	41602383	6p21.1	6p21.1	608924	FOXP4	Forkhead box P4	FOXP4	116113	ENSG00000137166			Foxp4 (MGI:1921373)
chr6	41637019	41654245	6p21	6p21.1	604971	MDFI	MYOD family inhibitor	MDFI	4188	ENSG00000112559			Mdfi (MGI:107687)
chr6	41683977	41736258	6p21	6p21.1	600744	TFEB, TCFEB	Transcription factor EB	TFEB	7942	ENSG00000112561			Tfeb (MGI:103270)
chr6	41736710	41747400	6p21.3-p21.1	6p21.1	169740	PGC	Preprogastricsin	PGC	5225	ENSG00000096088	cen-PGG-GLO1-HLA		Pgc (MGI:98909)
chr6	41780761	41787371	6p21.31	6p21.1	611389	PRICKLE4, C6orf49, OBTP	Prickle, Drosophila, homolog of, 4	PRICKLE4	29964	ENSG00000278224			Prickle4 (MGI:2685785)
chr6	41787442	41789895	6p21.1	6p21.1	616168	TOMM6, TOM6	Translocase of outer mitochondrial membrane 6, yeast, homolog of	TOMM6	100188893	ENSG00000214736			Tomm6 (MGI:1913369)
chr6	41905352	41921146	6p21.1	6p21.1	612915	MED20, TRFP	Mediator complex subunit 20	MED20	9477	ENSG00000124641			Med20 (MGI:1929648)
chr6	41921226	41933045	6p21.1	6p21.1	603871	BYSL	By the ribosomal protein S6 gene, Drosophila, homolog-like (bystin)	BYSL	705	ENSG00000112578			Bysl (MGI:1858419)
chr6	41934932	42048893	6p21	6p21.1	123834	CCND3	Cyclin D3	CCND3	896	ENSG00000112576	pseudogene also on 6p21		Ccnd3 (MGI:88315)
chr6	42155376	42180082	6p21.1	6p21.1	600364	GUCA1A, GCAP, COD3, CORD14	Guanylate cyclase activator 1A, retina	GUCA1A	2978	ENSG00000048545		Cone dystrophy-3, 602093 (3), Autosomal dominant; Cone-rod dystrophy 14, 602093 (3), Autosomal dominant	Guca1a (MGI:102770)
chr6	42183283	42194955	6p21.1	6p21.1	602275	GUCA1B, GCAP2, GUCA2, RP48	Guanylate cyclase activator 1B, retina	GUCA1B	2979	ENSG00000112599		Retinitis pigmentosa 48, 613827 (3)	Guca1b (MGI:1194489)
chr6	42206800	42217894	6p21.1-p12.1	6p21.1	611976	MRPS10	Mitochondrial ribosomal protein S10	MRPS10	55173	ENSG00000048544	5 pseudogenes on chromosomes 1, 3, and 9		Mrps10 (MGI:1928139)
chr6	42224932	42452215	6p21.1	6p21.1	610322	TRERF1, TREP132	Transcriptional regulating factor 1	TRERF1	55809	ENSG00000124496			Trerf1 (MGI:2442086)
chr6	42563904	42693504	6p21.1	6p21.1	609134	UBR2, C6orf133, KIAA0349	Ubiquitin-protein ligase E3 component N-recognin 2	UBR2	23304	ENSG00000024048			Ubr2 (MGI:1861099)
chr6	42694508	42723038	6p21.1-cen	6p21.1	179605	PRPH2, DS, RP7, PRPH, AVMD, AOFMD, CACD2, MDBS1	Peripherin 2, mouse, homolog of	PRPH2	5961	ENSG00000112619	digenic RP with ROM1	Choroidal dystrophy, central areolar 2, 613105 (3), Autosomal dominant; Leber congenital amaurosis 18, 608133 (3), Autosomal recessive, Autosomal dominant; Macular dystrophy, patterned, 1, 169150 (3), Autosomal dominant; Macular dystrophy, vitelliform, 3, 608161 (3), Autosomal dominant; Retinitis pigmentosa 7 and digenic, 608133 (3), Autosomal recessive, Autosomal dominant; Retinitis punctata albescens, 136880 (3), Autosomal recessive, Autosomal dominant	Prph2 (MGI:102791)
chr6	42744495	42746145	6p21.1	6p21.1	602971	TBCC, CFC	Tubulin-specific chaperone C	TBCC	6903	ENSG00000124659			Tbcc (MGI:1919976)
chr6	42879162	42889895	6p21.1	6p21.1	617417	RPL7L1	Ribosomal protein L7-like 1	RPL7L1	285855	ENSG00000146223			Rpl7l1 (MGI:1913479)
chr6	42915596	42925837	6p21.3	6p21.1	606817	PTCRA	Pre-T-cell receptor, alpha-chain precursor	PTCRA	171558	ENSG00000171611			Ptcra (MGI:104857)
chr6	42928001	42939286	6pter-p12	6p21.1	610774	CNPY3, TNRC5, PRAT4A, ERDA5, EIEE60	Canopy 3, zebrafish, homolog of	CNPY3	10695	ENSG00000137161		Epileptic encephalopathy, early infantile, 60, 617929 (3), Autosomal recessive	Cnpy3 (MGI:1919279)
chr6	42960753	42963879	6p12	6p21.1	606628	GNMT	Glycine N-methyltransferase	GNMT	27232	ENSG00000124713		Glycine N-methyltransferase deficiency, 606664 (3), Autosomal recessive	Gnmt (MGI:1202304)
chr6	42963872	42980223	6p21.1	6p21.1	601498	PEX6, PXAAA1, PAF2, PBD4A, PDB4B, HMLR2	Peroxisomal biogenesis factor 6 (peroxisomal AAA-type ATPase 1)	PEX6	5190	ENSG00000124587		Heimler syndrome 2, 616617 (3), Autosomal recessive; Peroxisome biogenesis disorder 4A (Zellweger), 614862 (3), Autosomal recessive; Peroxisome biogenesis disorder 4B, 614863 (3), Autosomal recessive, Autosomal dominant	Pex6 (MGI:2385054)
chr6	42980343	43017085	6p23-q12	6p21.1	143170	MEA1, MEA	Male-enhanced antigen 1	MEA1	4201	ENSG00000124733			Mea1 (MGI:96957)
chr6	42984498	43012344	6p21.1	6p21.1	601646	PPP2R5D, MRD35	Protein phosphatase-2, regulatory subunit B (B56), delta isoform	PPP2R5D	5528	ENSG00000112640		Mental retardation, autosomal dominant 35, 616355 (3), Autosomal dominant	Ppp2r5d (MGI:2388481)
chr6	43014102	43021297	6p21.1	6p21.1	611248	KLHDC3, PEAS	KELCH domain-containing protein 3	KLHDC3	116138	ENSG00000124702			Klhdc3 (MGI:2651568)
chr6	43021601	43029598	6p21.1	6p21.1	613475	RRP36, C6orf153	Ribosomal RNA-processing factor, 36	RRP36	88745	ENSG00000124541			Rrp36 (MGI:2385053)
chr6	43037616	43053944	6p21.1	6p21.1	609577	CUL7, 3M1	Cullin 7	CUL7	9820	ENSG00000044090		3-M syndrome 1, 273750 (3), Autosomal recessive	Cul7 (MGI:1913765)
chr6	43054028	43060179	6p21.3	6p21.1	611822	MRPL2	Mitochondrial ribosomal protein L2	MRPL2	51069	ENSG00000112651			Mrpl2 (MGI:1351622)
chr6	43076267	43161719	6p21.1-p12.2	6p21.1	601890	PTK7	PTK7 protein tyrosine kinase 7	PTK7	5754	ENSG00000112655			Ptk7 (MGI:1918711)
chr6	43171294	43181505	6p21.1	6p21.1	600589	SRF	Serum response factor	SRF	6722	ENSG00000112658			Srf (MGI:106658)
chr6	43182169	43224586	6p21.1	6p21.1	607489	CUL9, PARC, KIAA0708	Cullin 9	CUL9	23113	ENSG00000112659			Cul9 (MGI:1925559)
chr6	43295709	43305537	6p21.2-p21.1	6p21.1	604995	SLC22A7, OAT2	Solute carrier family 22 (organic anion transporter), member 7	SLC22A7	10864	ENSG00000137204			Slc22a7 (MGI:1859559)
chr6	43336069	43369442	6p21.1	6p21.1	617512	ZNF318, TZF, ZFP318	Zinc finger protein 318	ZNF318	24149	ENSG00000171467			Zfp318 (MGI:1889348)
chr6	43427537	43451993	6p21.1	6p21.1	612509	ABCC10, MRP7	ATP-binding cassette, subfamily C, member 10	ABCC10	89845	ENSG00000124574			Abcc10 (MGI:2386976)
chr6	43477522	43506555	6p21.1	6p21.1	612658	TJAP1, PILT, TJP4	Tight junction-associated protein 1	TJAP1	93643	ENSG00000137221			Tjap1 (MGI:1921344)
chr6	43511826	43516989	6p21.2-p21.1	6p21.1	609775	YIPF3, KLIP1	YIP1 domain family, member 3	YIPF3	25844	ENSG00000137207			Yipf3 (MGI:106280)
chr6	43517023	43562403	6p22.3	6p21.1	610060	POLR1C, RPA39, RPA40, RPAC1, RPA5, TCS3, HLD11	Polymerase I, RNA, subunit C	POLR1C	9533	ENSG00000171453		Leukodystrophy, hypomyelinating, 11, 616494 (3), Autosomal recessive; Treacher Collins syndrome 3, 248390 (3), Autosomal recessive	Polr1c (MGI:103288)
chr6	43522329	43576074	6p21.1	6p21.1	607845	XPO5, KIAA1291	Exportin 5	XPO5	57510	ENSG00000124571			Xpo5 (MGI:1913789)
chr6	43576140	43620522	6p21.1-p12	6p21.1	603968	POLH, XPV	Polymerase, DNA, eta	POLH	5429	ENSG00000170734		Xeroderma pigmentosum, variant type, 278750 (3), Autosomal recessive	Polh (MGI:1891457)
chr6	43620480	43631308	6p21.2-p21.1	6p21.1	607434	GTPBP2	GTP-binding protein 2	GTPBP2	54676	ENSG00000172432			Gtpbp2 (MGI:1860138)
chr6	43645029	43671010	6p21.1	6p21.1	612648	RSPH9, CILD12	Radial spoke head 9, Chlamydomonas, homolog of	RSPH9	221421	ENSG00000172426		Ciliary dyskinesia, primary, 12, 612650 (3)	Rsph9 (MGI:1922814)
chr6	43671196	43687811	6p21.3	6p21.1	611981	MRPS18A, MRPS18-3	Mitochondrial ribosomal protein S18A	MRPS18A	55168	ENSG00000096080			Mrps18a (MGI:1915815)
chr6	43770208	43786486	6p12	6p21.1	192240	VEGF, MVCD1	Vascular endothelial growth factor	VEGFA	7422	ENSG00000112715		{Microvascular complications of diabetes 1}, 603933 (3)	Vegfa (MGI:103178)
chr6	44113453	44127490	6p21.3	6p21.1	611827	MRPL14, MRPL32	Mitochondrial ribosomal protein L14	MRPL14	64928	ENSG00000180992			Mrpl14 (MGI:1333864)
chr6	44158810	44184401	6p12	6p21.1	604822	CAPN11	Calpain 11	CAPN11	11131	ENSG00000137225			Capn11 (MGI:1352490)
chr6	44219504	44234150	6p21.2-p21.1	6p21.1	602193	SLC29A1, ENT1	Solute carrier family 29 (nucleoside transporters), member 1 (equilibrative nucleoside transporter-1)	SLC29A1	2030	ENSG00000112759			Slc29a1 (MGI:1927073)
chr6	44246165	44253887	6p21.1	6p21.1	140572	HSP90AB1, HSPCB, HSPC2, HSP90B	Heas-shock protein, 90kD, alpha, class B, member 1	HSP90AB1	3326	ENSG00000096384			Hsp90ab1 (MGI:96247)
chr6	44254100	44257889	6p12.1-p11.2	6p21.1	610788	SLC35B2, PAPST1, SLL	Solute carrier family 35 (3'-phosphoadenosine 5')-phosphosulfate transporter), member B2	SLC35B2	347734	ENSG00000157593			Slc35b2 (MGI:1921086)
chr6	44258165	44265787	6p21.1	6p21.1	604548	NFKBIE, IKBE	Nuclear factor of kappa light chain gene enhancer in B cells inhibitor, epsilon	NFKBIE	4794	ENSG00000146232			Nfkbie (MGI:1194908)
chr6	44280159	44297804	6p21.3-cen	6p21.1	186975	TCTE1	T-complex-associated-testis-expressed-1	TCTE1	202500	ENSG00000146221			Tcte1 (MGI:98640)
chr6	44297849	44313357	6p21.1	6p21.1	612035	AARS2, KIAA1270, MTALARS, COXPD8, LKENP	Alanyl-tRNA synthetase 2	AARS2	57505	ENSG00000124608		Combined oxidative phosphorylation deficiency 8, 614096 (3), Autosomal recessive; Leukoencephalopathy, progressive, with ovarian failure, 615889 (3), Autosomal recessive	Aars2 (MGI:2681839)
chr6	44387513	44450423	6p21	6p21.1	602868	CDC5L	Cell division cycle 5, S. pombe, homolog-like	CDC5L	988	ENSG00000096401			Cdc5l (MGI:1918952)
chr6	44809056	45378050	6p21.1	6p21.1	602947	SUPT3H, SPT3	Suppressor of Ty 3, S. cerevisiae, homolog of	SUPT3H	8464	ENSG00000196284			Supt3 (MGI:1923723)
chr6	45328316	45551081	6p21	6p21.1	600211	RUNX2, CBFA1, PEBP2A1, AML3, CCD, CLCD	Runt-related transcription factor 2	RUNX2	860	ENSG00000124813		Cleidocranial dysplasia, 119600 (3), Autosomal dominant; Cleidocranial dysplasia, forme fruste, dental anomalies only, 119600 (3), Autosomal dominant; Cleidocranial dysplasia, forme fruste, with brachydactyly, 119600 (3), Autosomal dominant; Metaphyseal dysplasia with maxillary hypoplasia with or without brachydactyly, 156510 (3), Autosomal dominant	Runx2 (MGI:99829)
chr6	45898450	46129808	6p21.1-p12.1	6p21.1	607293	CLIC5, DFNB103	Chloride intracellular channel 5	CLIC5	53405	ENSG00000112782	mutation identified in 1 DFNB103 family	?Deafness, autosomal recessive 103, 616042 (3), Autosomal recessive	Clic5 (MGI:1917912)
chr6	46129963	46146698	6p21.1	6p21.1	617000	ENPP4, NPP4, KIAA0879	Ectonucleotide pyrophosphatase/phosphodiesterase 4	ENPP4	22875	ENSG00000001561			Enpp4 (MGI:2682634)
chr6	46159181	46171009	6p21.1	6p21.1	617001	ENPP5, NPP5	Ectonucleotide pyrophosphatase/phosphodiesterase 5	ENPP5	59084	ENSG00000112796			Enpp5 (MGI:1933830)
chr6	46200000	69200000	6p12-q12		609026	CTRCT28, ARCC1	Cataract 28		493862			{Cataract 28, age-related cortical, susceptibility to}, 609026 (2)	
chr6	46200000	57200000	6p12		164100	NYS2, NYSA	Nystagmus 2, congenital, autosomal dominant	NYS2	4933			Nystagmus 2, congenital, autosomal dominant, 164100 (2), Autosomal dominant	
chr6	46220729	46492066	6p12.3	6p12.3	604876	RCAN2, ZAKI4, DSCR1L1, MCIP2, CSP2	Regulator of calcineurin 2	RCAN2	10231	ENSG00000172348			Rcan2 (MGI:1858219)
chr6	46549579	46652848	6p21.1-p11.2	6p12.3	605994	CYP39A1	Cytochrome P450, subfamily XXXIXA (oxysterol 7-alpha-hydroxylase), polypeptide 1	CYP39A1	51302	ENSG00000146233			Cyp39a1 (MGI:1927096)
chr6	46652914	46678189	6p12.3	6p12.3	613725	SLC25A27, UCP4	Solute carrier family 25, member 17	SLC25A27	9481	ENSG00000153291			Slc25a27 (MGI:1921261)
chr6	46680267	46704318	6p12.3	6p12.3	611200	TDRD6	TUDOR domain-containing protein 6	TDRD6	221400	ENSG00000180113			Tdrd6 (MGI:2679727)
chr6	46700557	46735835	6p21.2-p12	6p12.3	601690	PLA2G7, PAFAH, PAFAD	Phospholipase A2, group VII (platelet-activating factor acetylhydrolase)	PLA2G7	7941	ENSG00000146070		{Asthma, susceptibility to}, 600807 (3), Autosomal dominant; {Atopy, susceptibility to}, 147050 (3), Autosomal dominant; Platelet-activating factor acetylhydrolase deficiency, 614278 (3), Autosomal recessive	Pla2g7 (MGI:1351327)
chr6	46793356	46845986	6p21.2-p21.1	6p12.3	600388	MEP1A	Meprin A, alpha	MEP1A	4224	ENSG00000112818			Mep1a (MGI:96963)
chr6	46997702	47042362	6p12.3	6p12.3	617430	ADGRF1, GPR110	Adhesion G protein-coupled receptor F1	ADGRF1	266977	ENSG00000153292			Adgrf1 (MGI:1924846)
chr6	47477745	47627262	6p12	6p12.3	604241	CD2AP, CMS	CD2-associated protein	CD2AP	23607	ENSG00000198087		Glomerulosclerosis, focal segmental, 3, 607832 (3)	Cd2ap (MGI:1330281)
chr6	47698544	47722020	6p12.3	6p12.3	614268	ADGRF4, GPR115	Adhesion G protein-coupled receptor F4	ADGRF4	221393	ENSG00000153294			Adgrf4 (MGI:1925499)
chr6	47782036	47831087	6p12.3	6p12.3	609042	OPN5, GRP136, PGR12	Opsin 5	OPN5	221391	ENSG00000124818			Opn5 (MGI:2662912)
chr6	47858597	48111131	6p21.3	6p12.3	616908	PTCHD4, PTCH53, C6orf138	Patched domain-containing protein 4	PTCHD4	442213	ENSG00000244694			Ptchd4 (MGI:1920485)
chr6	49430359	49463327	6p21	6p12.3	609058	MUT, MCM	Methylmalonyl Coenzyme A mutase	MUT	4594	ENSG00000146085		Methylmalonic aciduria, mut(0) type, 251000 (3), Autosomal recessive	Mut (MGI:97239)
chr6	49463326	49493106	6p12.3	6p12.3	611506	CENPQ	Centromeric protein Q	CENPQ	55166	ENSG00000031691			Cenpq (MGI:1933744)
chr6	49499957	49528063	6p12.3	6p12.3	614763	GLYATL3	Glycine N-acyltransferase-like 3	GLYATL3	389396	ENSG00000203972			Glyatl3 (MGI:3647683)
chr6	49605174	49636873	6p21.1-p11	6p12.3	180297	RHAG, RH50A, OHST	Rhesus blood group-associated glycoprotein	RHAG	6005	ENSG00000112077		Anemia, hemolytic, Rh-null, regulator type, 268150 (3), Autosomal dominant; Overhydrated hereditary stomatocytosis, 185000 (3), Autosomal dominant; Rh-mod syndrome (3)	Rhag (MGI:1202713)
chr6	49676664	49714197	6p12	6p12.3	187430	CRISP2, TPX1, TSP1	Cysteine-rich secretory protein 2	CRISP2	7180	ENSG00000124490			Crisp2 (MGI:98815)
chr6	49785650	49787339	6p21.1-p12	6p12.3	172270	PGK2	Phosphoglycerate kinase-2 (testicular PGK)	PGK2	5232	ENSG00000170950	pseudogene on chr.12		Pgk2 (MGI:97563)
chr6	49833938	49877095	6p21.2-p21.1	6p12.3	601193	CRISP1, AEGL1	Cysteine-rich secretory protein 1	CRISP1	167	ENSG00000124812			Crisp4 (MGI:1925331)
chr6	49960291	49964104	6p12	6p12.3	615243	DEFB114, DEFB14	Defensin, beta, 114	DEFB114	245928	ENSG00000177684			
chr6	50713543	50773032	6p21.1-p12.1	6p12.3	610161	TFAP2D, TFAP2BL1	Transcription factor AP2-delta	TFAP2D	83741	ENSG00000008197			Tfap2d (MGI:2153466)
chr6	50817691	50847618	6p12	6p12.3	601601	TFAP2B, CHAR, PDA2	Transcription factor AP-2 beta (activating enhancer-binding protein 2 beta)	TFAP2B	7021	ENSG00000008196		Char syndrome, 169100 (3), Autosomal dominant; Patent ductus arteriosus 2, 617035 (3), Autosomal dominant	Tfap2b (MGI:104672)
chr6	51614684	52087624	6p12.3-p12.2	6p12.3-p12.2	606702	FCYT, PKHD1, ARPKD, PKD4	Fibrocystin	PKHD1	5314	ENSG00000170927		Polycystic kidney disease 4, with or without hepatic disease, 263200 (3), Autosomal recessive	Pkhd1 (MGI:2155808)
chr6	51800000	69200000	6p12.2-q12		614345	MRT24	Mental retardation, autosomal recessive 24	MRT24	100852402		between rs651733 and rs1508668	Mental retardation, autosomal recessive 24, 614345 (2), Autosomal recessive	
chr6	52144348	52144433	6p12.2	6p12.2	611599	MIR206, MIRN206	Micro RNA 206	MIR206	406989				
chr6	52146813	52151022	6p12.2	6p12.2	614933	LINCMD1	Long intergenic noncoding RNA, muscle differentiation 1	LINCMD1	101154644				
chr6	52148922	52149040	6p12.2	6p12.2	610946	MIR133B, MIRN133B	Micro RNA 133B	MIR133B	442890				
chr6	52186386	52190637	6p12.2	6p12.2	603149	IL17A, IL17, CTLA8	Interleukin-17a	IL17A	3605	ENSG00000112115	previously mapped to 2q31		Il17a (MGI:107364)
chr6	52236680	52245688	6p12	6p12.2	606496	IL17F, ML1, CANDF6	Interleukin 17F	IL17F	112744	ENSG00000112116	mutation identified in 1 CANDF6 family	?Candidiasis, familial, 6, autosomal dominant, 613956 (3)	Il17f (MGI:2676631)
chr6	52264013	52284880	6p12	6p12.2	602693	MCM3	Minichromosome maintenance, S. cerevisiae, homolog of, 3	MCM3	4172	ENSG00000112118			Mcm3 (MGI:101845)
chr6	52362127	52407776	6p12	6p12.2	607780	PAQR8, C6orf33, LMPB1, MPRB	Progestin and ADIPOQ receptor family, member 8	PAQR8	85315	ENSG00000170915			Paqr8 (MGI:1921479)
chr6	52420195	52495784	6p12-p11	6p12.2	608815	EFHC1, FLJ10466, EJM1, JAE, EJA1	EF hand domain (C-terminal)-containing 1	EFHC1	114327	ENSG00000096093		{Epilepsy, juvenile absence, susceptibility to, 1}, 607631 (3), Autosomal dominant; {Myoclonic epilepsy, juvenile, susceptibility to, 1}, 254770 (3), Autosomal dominant	Efhc1 (MGI:1919127)
chr6	52497401	52577063	6p12.2	6p12.2	608485	TRAM2, KIAA0057	Translocation-associated membrane protein 2	TRAM2	9697	ENSG00000065308			Tram2 (MGI:1924817)
chr6	52671085	52686587	6p12.2	6p12.2	616870	TMEM14A	Transmembrane protein 14A	TMEM14A	28978	ENSG00000096092			Tmem14a (MGI:1922962)
chr6	52750086	52763562	6p12.2	6p12.2	138360	GSTA2, GST2	Glutathione S-transferase A2	GSTA2	2939	ENSG00000244067			
chr6	52791379	52803966	6p12.2	6p12.2	138359	GSTA1	Glutathione S-transferase A1	GSTA1	2938	ENSG00000243955			
chr6	52831741	52846094	6p12.2	6p12.2	607605	GSTA5	Glutathione S-transferase, alpha-5	GSTA5	221357	ENSG00000182793			Gm10639,Gsta1,Gsta2,Gm3776 (MGI:1095417,MGI:3704339,MGI:95863,MGI:3826440)
chr6	52896638	52909798	6p12.2	6p12.2	605449	GSTA3	Glutathione S-transferase, alpha-3	GSTA3	2940	ENSG00000174156			Gsta3 (MGI:95856)
chr6	52977947	52995379	6p12.2	6p12.2	605450	GSTA4	Glutathione S-transferase, alpha-4	GSTA4	2941	ENSG00000170899			
chr6	52995619	52995950	6p12.1	6p12.2	606515	RN7SK, 7SK	RNA, 7SK small nuclear	RN7SK	125050				
chr6	53001298	53061863	6p12.3	6p12.1	612325	ICK, MRK, KIAA0936, ECO, EJM10	Intestinal cell kinase	ICK	22858	ENSG00000112144		Endocrine-cerebroosteodysplasia, 612651 (3), Autosomal recessive; {Epilepsy, juvenile myoclonic, susceptibility to, 10}, 617924 (3), Autosomal dominant	Ick (MGI:1934157)
chr6	53057806	53100872	6p12.3-p11.2	6p12.1	609091	FBXO9, FBX9	F-box only protein 9	FBXO9	26268	ENSG00000112146			Fbxo9 (MGI:1918788)
chr6	53126960	53262802	6p12.1	6p12.1	603715	GCM1, GCMA	Glial cells missing, Drosophila, homolog of, 1	GCM1	8521	ENSG00000137270			Gcm1 (MGI:108045)
chr6	53267397	53349178	6p12	6p12.1	611805	ELOVL5, HELO1, SCA38	Elongation of very long chain fatty acids-like 5	ELOVL5	60481	ENSG00000012660		Spinocerebellar ataxia 38, 615957 (3), Autosomal dominant	Elovl5 (MGI:1916051)
chr6	53497340	53545128	6p12	6p12.1	606857	GCLC, GLCLC	Glutamate-cysteine ligase, catalytic subunit	GCLC	2729	ENSG00000001084		Hemolytic anemia due to gamma-glutamylcysteine synthetase deficiency, 230450 (3), Autosomal recessive; {Myocardial infarction, susceptibility to}, 608446 (3)	Gclc (MGI:104990)
chr6	53647900	53665853	6p12	6p12.1	610749	KLHL31, KLHL	Kelch-like 31	KLHL31	401265	ENSG00000124743			Klhl31 (MGI:3045305)
chr6	53794496	53924124	6p12.3-p12.2	6p12.1	608195	LRRC1, LANO	Leucine-rich repeat-containing protein 1	LRRC1	55227	ENSG00000137269			Lrrc1 (MGI:2442313)
chr6	54018915	54266324	6p12.1	6p12.1	614106	MLIP, C6orf142	Muscular LMNA-interating protein	MLIP	90523	ENSG00000146147			Mlip (MGI:1916892)
chr6	54307791	54390151	6p12-p11.2	6p12.1	606749	TINAG, TIN1, TIN2	Tubulointerstitial nephritis antigen	TINAG	27283	ENSG00000137251			Tinag (MGI:1349477)
chr6	55106459	55284697	6p12.1	6p12.1	602393	HCRTR2, OX2R	Hypocretin receptor 2	HCRTR2	3062	ENSG00000137252			Hcrtr2 (MGI:2680765)
chr6	55327468	55402492	6p12.1	6p12.1	617837	GFRAL, GRAL	GDNF family receptor alpha-like protein	GFRAL	389400	ENSG00000187871			Gfral (MGI:3607786)
chr6	55753652	55875589	6p12.1	6p12.1	112265	BMP5	Bone morphogenetic protein-5	BMP5	653	ENSG00000112175			Bmp5 (MGI:88181)
chr6	56056589	56394127	6p12.3-p11.2	6p12.1	610002	COL21A1	Collagen, type XXI, alpha-1 polypeptide	COL21A1	81578	ENSG00000124749			
chr6	56457986	56954670	6p12-p11	6p12.1	113810	DST, BPAG1, DMH, D6S1101, HSAN6, EBSB2	Dystonin (bullous pemphigoid antigen 1)	DST	667	ENSG00000151914	?mutation identified in 1 HSAN6 family	Epidermolysis bullosa simplex, autosomal recessive 2, 615425 (3), Autosomal recessive; ?Neuropathy, hereditary sensory and autonomic, type VI, 614653 (3), Autosomal recessive	
chr6	57088969	57170304	6p12.1	6p12.1	615708	ZNF451, COASTER	Zinc finger protein 451	ZNF451	26036	ENSG00000112200			Zfp451 (MGI:2137896)
chr6	57172305	57185214	6p11.2	6p12.1	603882	BAG2	BCL2-associated athanogene 2	BAG2	9532	ENSG00000112208			Bag2 (MGI:1891254)
chr6	57186991	57222313	6p11	6p12.1-p11.2	606144	RAB23	Ras-associated protein RAB23	RAB23	51715	ENSG00000112210		Carpenter syndrome, 201000 (3), Autosomal recessive	Rab23 (MGI:99833)
chr6	57200000	59800000	6p11		608173	AITD1	Autoimmune thyroid disease, susceptibility to, 1		387578			{Autoimmune thyroid disease, susceptibility to, 1}, 608173 (2)	
chr6	57314804	57646851	6p12-p11.1	6p11.2	176636	PRIM2A	Primase polypeptide 2A, 58kD	PRIM2	5558	ENSG00000146143			Prim2 (MGI:97758)
chr6	59800000	170805979	6q		193007	BPPV	Vertigo, benign paroxysmal positional		619536		max lod at D6S1556	Vestibulopathy, familial, 193007 (2), Autosomal dominant	
chr6	59800000	87300000	6q11-q14		613544	DEL6q11q14, C6DELq11q14	Chromosome 6q11-q14 deletion syndrome				contiguous gene deletion syndrome	Chromosome 6q11-q14 deletion syndrome, 613544 (4), Isolated cases	
chr6	61542696	62286226	6q11.1	6q11.1	610487	KHDRBS2, SLM1	KH domain-containing, RNA-binding, signal transduction-associated protein 2	KHDRBS2	202559	ENSG00000112232			Khdrbs2 (MGI:2159649)
chr6	62700000	69200000	6q12		608905	ADHD3	Attention deficit-hyperactivity disorder, susceptibility to, 2		450089			{Attention deficit-hyperactivity disorder}, 143465 (2), Autosomal dominant	
chr6	62700000	105000000	6q12-q16		605582	CMD1K	Cardiomyopathy, dilated, 1K	CMD1K	65014			Cardiomyopathy, dilated, 1K, 605582 (2)	
chr6	62700000	92500000	6q12-q15		614342	MRT30	Mental retardation, autosomal recessive 30		100852401		between rs4612125 and rs285651	Mental retardation, autosomal recessive 30, 614342 (2), Autosomal recessive	
chr6	63528020	63583587	6q12	6q12	601585	PTP4A1, HH72, PRL1	Protein tyrosine phosphatase, type 4A, 1	PTP4A1	7803	ENSG00000112245			Ptp4a1 (MGI:1277096)
chr6	63635801	63715521	6q12	6q12	607789	PHF3, KIAA0244	PHD finger protein 3	PHF3	23469	ENSG00000118482			Phf3 (MGI:2446126)
chr6	63719979	65707224	6q12	6q12	612424	EYS, RP25	Eyes shut, Drosophila, homolog of	EYS	346007	ENSG00000188107		Retinitis pigmentosa 25, 602772 (3), Autosomal recessive	
chr6	68635282	69389510	6q12	6q12-q13	602684	ADGRB3, BAI3	Adhesion G protein-coupled receptor B3	ADGRB3	577	ENSG00000135298			Adgrb3 (MGI:2441837)
chr6	69200000	98900000	6q13-q16.1		611572	OTSC7	Otosclerosis 7	OTSC7	399516		between D6S1036 and D6S300	Otosclerosis 7, 611572 (2), Autosomal dominant	
chr6	69200000	164100000	6q13-q26		603175	SCZD5	Schizophrenia susceptibility locus, chromosome 6q-related				max lod at D6S1626 and D6S292	{Schizophrenia}, 181500 (2), Autosomal dominant	
chr6	69675748	69797156	6q13	6q13	612625	LMBRD1, LMBD1, NESI, MAHCF	LMBR1 domain-containing protein 1	LMBRD1	55788	ENSG00000168216		Methylmalonic aciduria and homocystinuria, cblF type, 277380 (3), Autosomal recessive	Lmbrd1 (MGI:1915671)
chr6	69866555	70215062	6q12-q14	6q13	120165	COL19A1, D6S228E, COL9A1L	Collagen XIX, alpha-1 polypeptide	COL19A1	1310	ENSG00000082293			Col19a1 (MGI:1095415)
chr6	70216039	70303082	6q13	6q13	120210	COL9A1, EDM6, STL4	Collagen IX, alpha-1 polypeptide	COL9A1	1297	ENSG00000112280	mutation identified in 1 EDM6 family	?Epiphyseal dysplasia, multiple, 6, 614135 (3), Autosomal dominant; Stickler syndrome, type IV, 614134 (3)	Col9a1 (MGI:88465)
chr6	70667770	70862014	6q13	6q13	611372	SMAP1	Small ADP-ribosylation factor GTPase-activating protein 1	SMAP1	60682	ENSG00000112305			Smap1 (MGI:2138261)
chr6	70861365	70957084	6q13	6q13	607497	GLCATS, KIAA1963	UDP-glucuronyltransferase S	B3GAT2	135152	ENSG00000112309			B3gat2 (MGI:2389490)
chr6	71403550	71403620	6q13	6q13	612329	MIR30A, MIRN30A	Micro RNA 30A	MIR30A	407029				
chr6	71886702	72403142	6q12-q13	6q13	606629	RIMS1, RIM1, RIM, KIAA0340, CORD7	Regulating synaptic membrane exocytosis 1	RIMS1	22999	ENSG00000079841		Cone-rod dystrophy 7, 603649 (3)	Rims1 (MGI:2152971)
chr6	72621842	73198850	6q14	6q13	607357	KCNQ5, MRD46	Potassium channel, voltage-gated, KQT-like subfamily, member 5	KCNQ5	56479	ENSG00000185760		Mental retardation, autosomal dominant 46, 617601 (3), Autosomal dominant	Kcnq5 (MGI:1924937)
chr6	73241313	73310364	6q13	6q13	611688	KHDC1	KH homology domain-containing protein 1	KHDC1	80759	ENSG00000135314			
chr6	73353061	73354275	6q13	6q13	611111	DPPA5, ESG1	Developmental pluripotency-associated gene 5	DPPA5	340168	ENSG00000203909			Dppa5a (MGI:101800)
chr6	73362676	73364174	6q13	6q13	611687	KHDC3L, C6orf221, ECAT1, HYDM2	KH domain containing 3-like, subcortical maternal complex member	KHDC3L	154288	ENSG00000203908		Hydatidiform mole, recurrent, 2, 614293 (3), Autosomal recessive	Khdc3 (MGI:1914241)
chr6	73368554	73369791	6q13	6q13	611689	OOEP, KHDC2	Oocyte-expressed protein, Dog, homolog of	OOEP	441161	ENSG00000203907			Ooep (MGI:1915218)
chr6	73394561	73417565	6q12-q13	6q13	606286	DDX43, HAGE	DEAD/H box 43	DDX43	55510	ENSG00000080007			Ddx43 (MGI:3642857)
chr6	73425132	73452319	6q13	6q13	613973	CGAS, MB21D1, C6orf150	Cyclic GMP-AMP synthase	CGAS	115004	ENSG00000164430			Mb21d1 (MGI:2442261)
chr6	73461730	73501455	6q13	6q13	614667	MTO1, COXPD10	Mitochondrial translation optimization 1, S. cerevisiae, homolog of	MTO1	25821	ENSG00000135297		Combined oxidative phosphorylation deficiency 10, 614702 (3), Autosomal recessive	Mto1 (MGI:1915541)
chr6	73515749	73521031	6q14	6q13	130590	EEF1A1, EF1A	Eukaryotic translation elongation factor-1, alpha-1	EEF1A1	1915	ENSG00000156508			Eef1a1 (MGI:1096881)
chr6	73593378	73654013	6q14-q15	6q13	604322	SLC17A5, SIASD, SLD	Solute carrier family 17 (sodium phosphate), member 5	SLC17A5	26503	ENSG00000119899		Salla disease, 604369 (3), Autosomal recessive; Sialic acid storage disorder, infantile, 269920 (3), Autosomal recessive	Slc17a5 (MGI:1924105)
chr6	73696084	73828316	6q13	6q13	608859	CD109	CD109 antigen	CD109	135228	ENSG00000156535			Cd109 (MGI:2445221)
chr6	75084325	75206261	6q13-q14.1	6q13-q14	120320	COL12A1, UCMD2, BTHLM2, EDSMYP	Collagen, type XII, alpha-1	COL12A1	1303	ENSG00000111799	mutation identified in 1 UCMD2 family	Bethlem myopathy 2, 616471 (3), Autosomal dominant; ?Ullrich congenital muscular dystrophy 2, 616470 (3)	Col12a1 (MGI:88448)
chr6	75200000	105000000	6q14-q16		608988	ATFB2	Atrial fibrillation, familial, 2		619478		max lod between  D6S286 and D6S1021	Atrial fibrillation, familial, 2, 608988 (2)	
chr6	75200000	100000000	6q14-q16.2		600790	PBCRA, CRAPB	Progressive bifocal chorioretinal atrophy	PBCRA1	7948			Chorioretinal atrophy, progressive bifocal, 600790 (2), Autosomal dominant	
chr6	75200000	83200000	6q14.1		610685	SHFLD2	Split-hand/foot malformation with long bone deficiency 2		791123		between rs623155 and rs1547251	Split-hand/foot malformation with long bone deficiency 2, 610685 (2)	
chr6	75237674	75244658	6q12	6q14.1	123996	COX7A2	Cytochrome c oxidase, subunit VIIa, polypeptide-2, liver	COX7A2	1347	ENSG00000112695	previously thought to be on chr.4		Cox7a2 (MGI:1316715)
chr6	75252921	75284915	6q14.1	6q14.1	611028	TMEM30A, CDC50A	Transmembrane protein 30A	TMEM30A	55754	ENSG00000112697			Tmem30a (MGI:106402)
chr6	75291857	75493913	6q14.1	6q14.1	607307	FILIP, KIAA1275	Filamin A-interacting protein	FILIP1	27145	ENSG00000118407			Filip1 (MGI:1917848)
chr6	75601508	75718284	6q13	6q14.1	605003	SENP6, SSP1, SUSP1	Sentrin-specific protease family, member 6	SENP6	26054	ENSG00000112701			Senp6 (MGI:1922075)
chr6	75749175	75919536	6q13	6q14.1	600970	MYO6, DFNA22, DFNB37	Myosin VI	MYO6	4646	ENSG00000196586		Deafness, autosomal dominant 22, 606346 (3), Autosomal dominant; Deafness, autosomal dominant 22, with hypertrophic cardiomyopathy, 606346 (3), Autosomal dominant; Deafness, autosomal recessive 37, 607821 (3), Autosomal recessive	Myo6 (MGI:104785)
chr6	75921113	76072677	6q13-q15	6q14.1	602870	IMPG1, IPM150, VMD4	Interphotoreceptor matrix proteoglycan-1	IMPG1	3617	ENSG00000112706		Macular dystrophy, vitelliform, 4, 616151 (3), Autosomal dominant	Impg1 (MGI:1926876)
chr6	77460847	77464021	6q13	6q14.1	182131	HTR1B	5-hydroxytryptamine (serotonin) receptor-1B	HTR1B	3351	ENSG00000135312			Htr1b (MGI:96274)
chr6	78867485	78979410	6q14.1	6q14.1	615375	IRAK1BP1, SIMPL	Interleukin 1 receptor-associated kinase 1-binding protein 1	IRAK1BP1	134728	ENSG00000146243			Irak1bp1 (MGI:1929475)
chr6	78934418	79078297	6q14	6q14.1	612870	PHIP	Pleckstrin homology domain-interacting protein	PHIP	55023	ENSG00000146247			Phip (MGI:1932404)
chr6	79201244	79234737	6q14.1	6q14.1	604502	HMGN3, TRIP7	High-mobility group nucleosomal binding protein 3 (thyroid hormone receptor interactor 7)	HMGN3	9324	ENSG00000118418			
chr6	79484990	79537429	6q14.1	6q14.1	611408	LCA5, C6orf152	Lebercilin	LCA5	167691	ENSG00000135338		Leber congenital amaurosis 5, 604537 (3)	Lca5 (MGI:1923032)
chr6	79631104	79703669	6q14.1	6q14.1	615678	SH3BGRL2	SH3 domain-binding glutamic acid-rich protein-like protein 2	SH3BGRL2	83699	ENSG00000198478			Sh3bgrl2 (MGI:1915350)
chr6	79914811	79947597	6q14	6q14.1	605512	ELOVL4, ADMD, STGD2, STGD3, ISQMR, SCA34	Elongation of very long chain fatty acids 4	ELOVL4	6785	ENSG00000118402		Ichthyosis, spastic quadriplegia, and mental retardation, 614457 (3), Autosomal recessive; Spinocerebellar ataxia 34, 133190 (3), Autosomal dominant; Stargardt disease 3, 600110 (3), Autosomal dominant	Elovl4 (MGI:1933331)
chr6	80004146	80042650	6q13-q21	6q14.1	604092	TTK, MPS1L1, PYT	TTK protein kinase	TTK	7272	ENSG00000112742			Ttk (MGI:1194921)
chr6	80106609	80469087	6q14	6q14.1	248611	BCKDHB, E1B	Branched chain keto acid dehydrogenase E1, beta polypeptide	BCKDHB	594	ENSG00000083123		Maple syrup urine disease, type Ib, 248600 (3), Autosomal recessive	Bckdhb (MGI:88137)
chr6	82169986	82247753	6q13-q14	6q14.1	606457	IBTK	Inhibitor of Bruton agammaglobulinemia tyrosine kinase	IBTK	25998	ENSG00000005700			Ibtk (MGI:1918677)
chr6	82363205	82367416	6q14-q15	6q14.1	190920	TPBG	Trophoblast glycoprotein	TPBG	7162	ENSG00000146242			Tpbg (MGI:1341264)
chr6	82880833	83065840	6q14.1	6q14.1	612495	UBE2CBP, H10BH	Ubiquitin-conjugating enzyme E2C-binding protein	UBE3D	90025	ENSG00000118420			Ube2cbp (MGI:1917598)
chr6	83067665	83171350	6q14.1	6q14.1	616823	DOPEY1, DOP1, KIAA1117	DOPEY family member 1	DOPEY1	23033	ENSG00000083097			Dopey1 (MGI:1289294)
chr6	83150727	83193935	6q12	6q14.1	172100	PGM3, AGM1, IMD23	Phosphoglucomutase-3 (N-acetylglucosamine-phosphate mutase 1)	PGM3	5238	ENSG00000013375		Immunodeficiency 23, 615816 (3), Autosomal recessive	Pgm3 (MGI:97566)
chr6	83210388	83431218	6q12	6q14.2	154250	ME1	Malic enzyme, cytoplasmic	ME1	4199	ENSG00000065833			Me1 (MGI:97043)
chr6	83552884	83709407	6q14.2	6q14.2	607923	SNAP91, AP180, KIAA0656	Synaptosomal-associated protein, 91kD	SNAP91	9892	ENSG00000065609			Snap91 (MGI:109132)
chr6	83853265	83857514	6q14.2	6q14.2	609891	RIPPLY2, C6orf59, SCDO6	Ripply2, zebrafish, homolog of	RIPPLY2	134701	ENSG00000203877	mutation identified in 1 SCDO6 family	?Spondylocostal dysostosis 6, 616566 (3), Autosomal recessive	Ripply2 (MGI:2685968)
chr6	83859650	83960426	6q14-q15	6q14.2	608343	CYB5R4, NCB5OR	Cytochrome b5 reductase 4	CYB5R4	51167	ENSG00000065615			Cyb5r4 (MGI:2386848)
chr6	84032620	84146277	6q14.2	6q14.2	615410	MRAP2, C6orf117, BMIQ18	Melanocortin 2 receptor accessory protein 2	MRAP2	112609	ENSG00000135324	mutation identified in 1 BMIQ18 individual	{?Obesity, susceptibility to, BMIQ18}, 615457 (3), Autosomal dominant	Mrap2 (MGI:3609239)
chr6	84124240	84227888	6q14.2-q14.3	6q14.2-q14.3	610201	CEP162, KIAA1009	Centrosomal protein, 162kD	CEP162	22832	ENSG00000135315			Cep162 (MGI:1925343)
chr6	84666809	84764235	6q14.3	6q14.3	604613	TBX18, CAKUT2	T-box 18	TBX18	9096	ENSG00000112837		Congenital anomalies of kidney and urinary tract 2, 143400 (3), Autosomal dominant	Tbx18 (MGI:1923615)
chr6	85449583	85495790	6q14-q21	6q14.3	129190	NT5E, NT5	5' nucleotidase, ecto (CD73)	NT5E	4907	ENSG00000135318		Calcification of joints and arteries, 211800 (3), Autosomal recessive	Nt5e (MGI:99782)
chr6	85505495	85594155	6q14.3	6q14.3	616105	SNX14, SCAR20	Sorting nexin 14	SNX14	57231	ENSG00000135317		Spinocerebellar ataxia, autosomal recessive 20, 616354 (3), Autosomal recessive	Snx14 (MGI:2155664)
chr6	85607783	85643861	6q14.3	6q14.3	616686	SYNCRIP, NSAP1, GRYRBP, HNRNPQ	Synaptotagmin-binding cytoplasmic RNA-interacting protein	SYNCRIP	10492	ENSG00000135316			Syncrip (MGI:1891690)
chr6	85677006	85678732	6q15	6q14.3	613263	SNHG5, U50HG	Small nucleolar RNA host gene 5	SNHG5	387066				
chr6	85677293	85677367	6q15	6q14.3	613117	SNORD50A, RNU50	Small nucleolar RNA, C/D box, 50A	SNORD50A	26799				
chr6	85677588	85677658	6q15	6q14.3	613264	SNORD50B	Small nucleolar RNA, C/D box	SNORD50B	692088				
chr6	86936918	87020067	6q14-q15	6q14.3	182132	HTR1E	5-hydroxytryptamine (serotonin) receptor-1E	HTR1E	3354	ENSG00000168830			
chr6	87085497	87095146	6q12-q21	6q14.3	118850	CGA	Chorionic gonadotropin, alpha polypeptide	CGA	1081	ENSG00000135346	shared with LH, FSH, TSH		Cga (MGI:88390)
chr6	87155548	87265942	6q14.3	6q14.3	616213	ZNF292, ZFP292, KIAA0530	Zinc finger protein 292	ZNF292	23036	ENSG00000188994			Zfp292 (MGI:1353423)
chr6	87282977	87329277	6q15	6q14-q15	611921	GJB7, CX25	Gap junction protein, beta-7	GJB7	375519	ENSG00000164411			
chr6	87472924	87512338	6q15	6q15	605634	SLC35A1, CST, CDG2F	Solute carrier family 35 (CMP-sialic acid transporter), member 1	SLC35A1	10559	ENSG00000164414		Congenital disorder of glycosylation, type IIf, 603585 (3), Autosomal recessive	Slc35a1 (MGI:1345622)
chr6	87513934	87590031	6q16.1	6q15	611524	RARS2, RARSL, PCH6	Arginyl-tRNA synthetase 2	RARS2	57038	ENSG00000146282		Pontocerebellar hypoplasia, type 6, 611523 (3), Autosomal recessive	Rars2 (MGI:1923596)
chr6	87590066	87677823	6q15	6q15	604972	ORC3, ORC3L, LAT	Origin recognition complex, subunit 3, S. cerevisiae, homolog of	ORC3	23595	ENSG00000135336			Orc3 (MGI:1354944)
chr6	87674859	87702266	6q15	6q15	615165	AKIRIN2	Akirin 2	AKIRIN2	55122	ENSG00000135334			Akirin2 (MGI:1889364)
chr6	88046906	88066831	6q15-q16.2	6q15	612739	SPACA1, SAMP32	Sperm acrosome-associated 1	SPACA1	81833	ENSG00000118434			Spaca1 (MGI:1914902)
chr6	88139863	88172848	6q14-q15	6q15	114610	CNR1	Cannabinoid receptor-1, brain	CNR1	1268	ENSG00000118432			Cnr1 (MGI:104615)
chr6	88609896	88963628	6q16	6q15	603512	RNGTT, HCE1, CAP1A	RNA guanylyltransferase and 5'-phosphatase	RNGTT	8732	ENSG00000111880			Rngtt (MGI:1329041)
chr6	89080709	89085159	6q15	6q15	606714	PNRC1, PROL2	Proline-rich nuclear receptor coactivator 1	PNRC1	10957	ENSG00000146278			Pnrc1 (MGI:1917838)
chr6	89094817	89165568	6q15	6q15	615913	PM20D2, ACY1L2	Peptidase M20 domain-containing 2	PM20D2	135293	ENSG00000146281			Pm20d2 (MGI:2685270)
chr6	89177503	89231287	6q14-q21	6q15	137161	GABRR1	Gamma-aminobutyric acid (GABA) A receptor, rho-1	GABRR1	2569	ENSG00000146276			Gabrr1 (MGI:95625)
chr6	89254463	89315298	6q14-q21	6q15	137162	GABRR2	Gamma-aminobutyric acid (GABA) A receptor, rho-2	GABRR2	2570	ENSG00000111886			Gabrr2 (MGI:95626)
chr6	89326624	89353154	6q15	6q15	616175	UBE2J1, UBC6E	Ubiquitin-conjugating enzyme E2J 1	UBE2J1	51465	ENSG00000198833			Ube2j1 (MGI:1926245)
chr6	89363508	89412275	6q15-q16	6q15	608268	RRAGD, RAGD	RAS-related GTP-binding protein D	RRAGD	58528	ENSG00000025039			Rragd (MGI:1098604)
chr6	89433177	89633833	6q14-q16	6q15	610583	ANKRD6, KIAA0957	Ankyrin repeat domain-containing protein 6	ANKRD6	22881	ENSG00000135299			Ankrd6 (MGI:2154278)
chr6	89829899	89874435	6q15	6q15	606880	CASP8AP2, FLASH	Caspase 8-associated protein 2	CASP8AP2	9994	ENSG00000118412			Casp8ap2 (MGI:1349399)
chr6	89894468	89896099	6q15	6q15	611924	GJA10, CX62	Gap junction protein, alpha-10	GJA10	84694	ENSG00000135355			Gja10 (MGI:1339969)
chr6	89926527	90296907	6q15	6q15	605394	BACH2	BTB and CNC homology 2	BACH2	60468	ENSG00000112182			Bach2 (MGI:894679)
chr6	90513572	90587300	6q14-q21	6q15	602614	MAP3K7, TAK1, CSCF, FMD2	Mitogen-activated protein kinase kinase kinase 7	MAP3K7	6885	ENSG00000135341		Cardiospondylocarpofacial syndrome, 157800 (3), Autosomal dominant; Frontometaphyseal dysplasia 2, 617137 (3), Autosomal dominant	
chr6	93240019	93419583	6q16.1	6q16.1	602190	EPHA7, HEK11	Ephrin receptor EphA7	EPHA7	2045	ENSG00000135333			Epha7 (MGI:95276)
chr6	95577496	95609451	6q16	6q16.1	612327	MANEA, ENDO	Mannosidase, endo-alpha	MANEA	79694	ENSG00000172469			Manea (MGI:2444484)
chr6	96015968	96215611	6q16	6q16.1	606865	FUT9	Fucosyltransferase 9	FUT9	10690	ENSG00000172461			Fut9 (MGI:1330859)
chr6	96521825	96555275	6q16.1	6q16.1	613372	UFL1, KIAA0776, NLBP	UFM1-specific ligase 1	UFL1	23376	ENSG00000014123			Ufl1 (MGI:1914740)
chr6	96562524	96618625	6q16.1-q16.3	6q16.1	605126	FHL5, ACT	Four-and-a-half LIM domains 5	FHL5	9457	ENSG00000112214			Fhl5 (MGI:1913192)
chr6	96794121	96837476	6q16.1-q16.3	6q16.1	606915	GPR63	G protein-coupled receptor 63	GPR63	81491	ENSG00000112218			Gpr63 (MGI:2135884)
chr6	96889310	96897890	6q16.1	6q16.1	611776	NDUFAF4, HRPAP20, C6orf66	NADH dehydrogenase 1 alpha subcomplex, assembly factor 4	NDUFAF4	29078	ENSG00000123545		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufaf4 (MGI:1915743)
chr6	97142160	97283436	6q16.1	6q16.1	615614	MMS22L, C6orf167	MMS22-like protein	MMS22L	253714	ENSG00000146263			Mms22l (MGI:2684980)
chr6	98830140	98831699	6q16.1	6q16.1	616328	PNKY	Long intergenic noncoding RNA Pinky		105447646				
chr6	98834703	98838789	6q16	6q16.1	600494	POU3F2, OCT7	POU domain, class 3, transcription factor 2	POU3F2	5454	ENSG00000184486			Pou3f2 (MGI:101895)
chr6	98868534	98948005	6q16.1-q16.3	6q16.1-q16.2	605654	FBXL4, FBL4, MTDPS13	F-box and leucine-rich repeat protein 4	FBXL4	26235	ENSG00000112234		Mitochondrial DNA depletion syndrome 13 (encephalomyopathic type), 615471 (3), Autosomal recessive	Fbxl4 (MGI:2140367)
chr6	98900000	100000000	6q16.2		616842	DHS6S1, MCDR1	DNase1 hypersensitivity, chromosome 6, site 1		107305681		upstream of PRDM13 and CCNC	Macular dystrophy, North Carolina type, 136550 (3), Autosomal dominant	
chr6	98900000	117900000	6q16.2-q22.1		611944	LMPH1B	Lymphedema, hereditary, IB		100188865		max lod at D6S1671	Lymphedema, hereditary, IB, 611944 (2), Autosomal dominant	
chr6	99398050	99426305	6q16.2	6q16.2	616653	PNISR, SRRP130, SFRS18	PNN-interacting serine/arginine-rich protein	PNISR	25957	ENSG00000132424			Pnisr (MGI:1913875)
chr6	99542386	99568813	6q21	6q16.2	123838	CCNC	Cyclin C	CCNC	892	ENSG00000112237			Ccnc (MGI:1858199)
chr6	99606773	99615577	6q16.2	6q16.2	616741	PRDM13	PR domain-containing protein 13	PRDM13	59336	ENSG00000112238			Prdm13 (MGI:2448528)
chr6	99919909	99994237	6q16.2-q21	6q16.2	606111	MCHR2, MCH2R, SLT, MCH2	Melanin-concentrating hormone receptor 2	MCHR2	84539	ENSG00000152034			
chr6	100000000	125800000	6q16.3-q22.31		613828	GEFSP8	Generalized epilepsy with febrile seizures plus, type 8		100653381		between D6S962 and D6S287	Epilepsy, generalized, with febrile seizures plus, type 8, 613828 (2)	
chr6	100385008	100464928	6q16.3-q21	6q16.3	603128	SIM1	Single-minded, Drosophila, homolog of, 1	SIM1	6492	ENSG00000112246		Obesity, severe, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Sim1 (MGI:98306)
chr6	100508193	100884454	6q16.3	6q16.3	614217	ASCC3, p200	Activating signal cointegrator 1 complex, subunit 3	ASCC3	10973	ENSG00000112249			Ascc3 (MGI:1925237)
chr6	101393707	102070082	6q21	6q16.3	138244	GRIK2, GLUR6, MRT6	Glutamate receptor, ionotropic, kainate 2	GRIK2	2898	ENSG00000164418		Mental retardation, autosomal recessive, 6, 611092 (3), Autosomal recessive	Grik2 (MGI:95815)
chr6	104682669	104859918	6q21	6q16.3	610876	HACE1, KIAA1320, SPPRS	HECT domain- and ankyrin repeat-containing E3 ubiquitin protein ligase 1	HACE1	57531	ENSG00000085382		Spastic paraplegia and psychomotor retardation with or without seizures, 616756 (3), Autosomal recessive	Hace1 (MGI:2446110)
chr6	104936998	105083331	6q21	6q16-q21	611044	LIN28B	Lin28, C. elegans, homolog of, B	LIN28B	389421	ENSG00000187772			Lin28b (MGI:3584032)
chr6	105000000	114200000	6q21		109780	BKMA1	Banded krait minor satellite DNA-1		7951		related to heterogametic sex		
chr6	105000000	114200000	6q21		606325	HTX3	Heterotaxy, visceral, 3, autosomal		116629			?Heterotaxy, visceral, 3, autosomal, 606325 (2)	
chr6	105000000	114200000	6q21		601666	IDDM15	Insulin-dependent diabetes mellitus-15	IDDM15	3414			{Diabetes mellitus, insulin-dependent, 15}, 601666 (2)	
chr6	105000000	114200000	6q21		606460	LGV2	Longevity 2		100329168		associated with rs2802292	[Longevity 2], 606460 (2)	
chr6	105000000	114200000	6q21		601349	MCOPS8, MMEP	Microphthalmia, syndromic 8				translocation with 13q12	Microphthalmia, syndromic 8, 601349 (2), ?Autosomal dominant	
chr6	105000000	114200000	6q21		612882	MENAQ2	Menarche, age at, QTL2		100302562		associated with rs7759938	{Menarche, age at, QTL2}, 612882 (2)	
chr6	105000000	130000000	6q21-q22		608852	PLF	Pulmonary function		450095		close to D6S281	{Pulmonary function}, 608852 (2)	
chr6	105096821	105137173	6q21	6q21	604577	BVES, HBVES, POPDC1, LGMD2X	Blood vessel epicardial substance	BVES	11149	ENSG00000112276	mutation identified in 1 LGMD2X family	?Muscular dystrophy, limb-girdle, type 2X, 616812 (3), Autosomal recessive	Bves (MGI:1346013)
chr6	105157899	105179982	6q21	6q21	605824	POPDC3, POP3	Popeye domain-containing protein 3	POPDC3	64208	ENSG00000132429			Popdc3 (MGI:1930153)
chr6	105277566	105403123	6q22	6q21	600400	PREP	Prolyl endopeptidase	PREP	5550	ENSG00000085377			Prep (MGI:1270863)
chr6	106046728	106109938	6q21-q22.1	6q21	603423	PRDM1, BLIMP1	PR domain-containing protein 1 (B-lymphocyte-induced maturation protein 1)	PRDM1	639	ENSG00000057657			Prdm1 (MGI:99655)
chr6	106184475	106325819	6q21	6q21	604261	ATG5, APG5, APG5L, ASP, SCAR25	Autophagy 5, S. cerevisiae, homolog of	ATG5	9474	ENSG00000057663	mutation identified in one SCAR25 family	?Spinocerebellar ataxia, autosomal recessive 25, 617584 (3), Autosomal recessive	Atg5 (MGI:1277186)
chr6	106360807	106570448	6q21	6q21	601797	AIM1, ST4	Absent in melanoma 1	CRYBG1	202	ENSG00000112297			Crybg1 (MGI:109544)
chr6	106559236	106630920	6q21	6q21	610502	RTN4IP1, NIMP, OPA10	Reticulon 4-interacting protein 1	RTN4IP1	84816	ENSG00000130347		Optic atrophy 10 with or without ataxia, mental retardation, and seizures, 616732 (3), Autosomal recessive	Rtn4ip1 (MGI:2178759)
chr6	106629565	106668416	6q21	6q21	617209	QRSL1, GATA	Glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like protein 1	QRSL1	55278	ENSG00000130348			Qrsl1 (MGI:1923813)
chr6	106969830	106976854	6q21	6q21	600074	CD24	CD24 antigen	CD24	100133941	ENSG00000272398	pseudogenes at 15q21-q22; Yq11		
chr6	107065180	107115185	6q21	6q21	616374	BEND3, KIAA1553	BEN domain-containing protein 3	BEND3	57673	ENSG00000178409			Bend3 (MGI:2677212)
chr6	107152556	107459680	6q21	6q21	610564	PDSS2, DLP1, C6orf210, COQ10D3	Prenyl diphosphate synthase, subunit 2	PDSS2	57107	ENSG00000164494		Coenzyme Q10 deficiency, primary, 3, 614652 (3), Autosomal recessive	Pdss2 (MGI:1918615)
chr6	107490103	107661308	6q21	6q21	613667	SOBP, JXC1, MRAMS	Sine oculis-binding protein, Drosophila, homolog of	SOBP	55084	ENSG00000112320		Mental retardation, anterior maxillary protrusion, and strabismus, 613671 (3), Autosomal recessive	Sobp (MGI:1924427)
chr6	107867755	107958277	6q21	6q21	608648	SEC63, PCLD2	Sec63, S. cerevisiae, homolog of	SEC63	11231	ENSG00000025796		Polycystic liver disease 2, 617004 (3), Autosomal dominant	Sec63 (MGI:2155302)
chr6	108041408	108074736	6q21	6q21	607649	OSTM1, GL, OPTB5	Osteopetrosis associated transmembrane protein 1 (grey-lethal, mouse, homolog of)	OSTM1	28962	ENSG00000081087		Osteopetrosis, autosomal recessive 5, 259720 (3), Autosomal recessive	Ostm1 (MGI:2655574)
chr6	108166057	108188808	6q21	6q21	603849	NR2E1, TLX	Nuclear receptor subfamily 2, group E, member 1 (tailless, Drosophila, homolog of)	NR2E1	7101	ENSG00000112333			Nr2e1 (MGI:1100526)
chr6	108211216	108261259	6q21	6q21	605930	SNX3	Sorting nexin 3	SNX3	8724	ENSG00000112335	t(6;13)(q21;q12)		Snx3 (MGI:1860188)
chr6	108294873	108525783	6q21	6q21	617469	AFG1L, AFG1, LACE1	AFG1-like ATPase	AFG1L	246269	ENSG00000135537			Afg1l (MGI:2148801)
chr6	108559822	108684768	6q21	6q21	602681	FOXO3A, FOXO3, FKHRL1	Forkhead box O3A	FOXO3	2309	ENSG00000118689			Foxo3 (MGI:1890081)
chr6	108986436	109094504	6q21	6q21	606103	SESN1, SEST1, PA26	Sestrin 1	SESN1	27244	ENSG00000080546			Sesn1 (MGI:2155278)
chr6	109366513	109382811	6q21	6q21	603356	CD164, DFNA66	CD164 antigen	CD164	8763	ENSG00000135535	mutation identified in 1 DFNA66 family	?Deafness, autosomal dominant 66, 616969 (3), Autosomal dominant	Cd164 (MGI:1859568)
chr6	109444061	109465967	6q16.1	6q21	607129	MICAL1, NICAL, MICAL	Microtubule-associated monooxygenase, calponin and LIM domains-containing 1	MICAL1	64780	ENSG00000135596			Mical1 (MGI:2385847)
chr6	109462515	109483236	6q21	6q21	614064	ZBTB24, PATZ2, ZNF450, KIAA0441, ICF2	Zinc finger- and BTB domain-containing protein 24	ZBTB24	9841	ENSG00000112365		Immunodeficiency-centromeric instability-facial anomalies syndrome-2, 614069 (3), Autosomal recessive	Zbtb24 (MGI:3039618)
chr6	109492854	109691211	6q21	6q21	615358	AK9	Adenylate kinase 9	AK9	221264	ENSG00000155085			Ak9 (MGI:2685080)
chr6	109691220	109825430	6q21	6q21	609390	FIG4, KIAA0274, SAC3, ALS11, YVS, BTOP	Fig4, S. cerevisiae, homolog of	FIG4	9896	ENSG00000112367	mutation identified in 1 BTOP family	Amyotrophic lateral sclerosis 11, 612577 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 4J, 611228 (3), Autosomal recessive; ?Polymicrogyria, bilateral temporooccipital, 612691 (3), Autosomal recessive; Yunis-Varon syndrome, 216340 (3), Autosomal recessive	Fig4 (MGI:2143585)
chr6	109978255	109980719	6q21-q22.1	6q21	600553	GPR6	G protein-coupled receptor-6	GPR6	2830	ENSG00000146360			Gpr6 (MGI:2155249)
chr6	110099818	110180003	6q21-q22	6q21	605035	WASF1, WAVE, WAVE1, SCAR1	WAS protein family member 1	WASF1	8936	ENSG00000112290			Wasf1 (MGI:1890563)
chr6	110180420	110232219	6q22.1	6q21	605585	CDC40, PRP17	Cell division cycle 40, S. cerevisiae, homolog of	CDC40	51362	ENSG00000168438			Cdc40 (MGI:1918963)
chr6	110392179	110415549	6q21	6q21	124450	DDO, DASOX	D-aspartate oxidase	DDO	8528	ENSG00000203797			Ddo (MGI:1925528)
chr6	110424586	110476673	6q21	6q21	608276	SLC22A16, FLIPT2, CT2	Solute carrier family 22 (organic cation transporter), member 16	SLC22A16	85413	ENSG00000004809			Slc22a16 (MGI:1918090)
chr6	110609977	110816530	6q21	6q21	614720	CDK19, KIAA1028	Cyclin-dependent kinase 19	CDK19	23097	ENSG00000155111			Cdk19 (MGI:1925584)
chr6	110814620	110895712	6q21-q22	6q21	180980	AMD1	S-adenosylmethionine decarboxylase-1	AMD1	262	ENSG00000123505	pseudogene AMD2 on Xq28		Amd2,Amd1 (MGI:88004,MGI:1333111)
chr6	110958559	110967887	6q21	6q21	611784	GTF3C6, C6orf51	General transcription factor 3C, polypeptide 6	GTF3C6	112495	ENSG00000155115			Gtf3c6 (MGI:1914621)
chr6	111087502	111227124	6q21-q22	6q21	607550	SLC16A10, TAT1	Solute carrier family 16 (monocarboxylic acid transporter), member 10	SLC16A10	117247	ENSG00000112394			Slc16a10 (MGI:1919722)
chr6	111259278	111280004	6q21	6q21	617331	MFSD4B, NAGLT1, Kiaa1919	Major facilitator superfamily domain-containing protein 4B	MFSD4B	91749	ENSG00000173214			Mfsd4b1 (MGI:2143575)
chr6	111299030	111483714	6q21	6q21	602776	REV3L, POLZ, REV3	Rev-3, yeast, homolog-like (polymerase, DNA, zeta)	REV3L	5980	ENSG00000009413			Rev3l (MGI:1337131)
chr6	111555377	111606299	6q21	6q21	607043	TRAF3IP2, C6orf5, ACT1, CIKS, C6orf4, C6orf6, PSORS13, CANDF8	TRAF3-interacting protein 2	TRAF3IP2	10758	ENSG00000056972	mutation identified in 1 family with CANDF8	?Candidiasis, familial, 8, 615527 (3), Autosomal recessive; {Psoriasis susceptibility 13}, 614070 (3)	Traf3ip2 (MGI:2143599)
chr6	111660331	111873451	6q21	6q21	137025	FYN	FYN oncogene related to SRC, FGR, YES	FYN	2534	ENSG00000010810	proximal 6q21		Fyn (MGI:95602)
chr6	112052812	112069685	6q22-q23	6q21	603400	WISP3, PPAC, PPD	Wnt-1 inducible signaling pathway protein 3	WISP3	8838	ENSG00000112761		Arthropathy, progressive pseudorheumatoid, of childhood, 208230 (3), Autosomal recessive; Spondyloepiphyseal dysplasia tarda with progressive arthropathy, 208230 (3), Autosomal recessive	Wisp3 (MGI:2685581)
chr6	112070656	112087547	6q21	6q21	607345	TUBE1, TUBE	Tubulin, epsilon-1	TUBE1	51175	ENSG00000074935			Tube1 (MGI:1919174)
chr6	112107930	112254721	6q21	6q21	600133	LAMA4, LAMA3, CMD1JJ	Laminin, alpha-4	LAMA4	3910	ENSG00000112769		Cardiomyopathy, dilated, 1JJ, 615235 (3), Autosomal dominant	Lama4 (MGI:109321)
chr6	113857334	113863474	6q22.2	6q21	177061	MRACKS, MACS, PKCSL	Myristoylated alanine-rich protein kinase C substrate (MARCKS, 80K-L)	MARCKS	4082	ENSG00000277443	monomorphic		
chr6	113936155	113971194	6q21	6q21	605164	HDAC2	Histone deacetylase 2	HDAC2	3066	ENSG00000196591			Hdac2 (MGI:1097691)
chr6	114055585	114342394	6q22.31	6q21-q22	609407	HS3ST5, 3OST5	Heparan sulfate 3-O-sulfotransferase 5	HS3ST5	222537	ENSG00000249853			Hs3st5 (MGI:2441996)
chr6	114200000	148500000	6q22-q24		609255	FEB5	Febrile seizures, familial, 5	FEB5	619398		between D6S1572 and D6S472	Febrile seizures, familial, 5, 609255 (2), Autosomal dominant	
chr6	114200000	148500000	6q22-q24		606035	FIQTL1	Fasting insulin level quantitative trait locus 1		619503		max lod at D6S1569	[Fasting insulin level quantitative trait locus 1], 606035 (2)	
chr6	114200000	138300000	6q22-q23		161950	IGAN1	IgA nephropathy, susceptibility to, 1		60498			{IgA nephropathy, susceptibility to, 1}, 161950 (2), ?Autosomal dominant	
chr6	114200000	138300000	6q22-q23		604201	SM2	Hepatic fibrosis susceptibility due to Schistosoma mansoni infection		53366		?polymorphism of INFGR1	{Hepatic fibrosis susceptibility due to Schistosoma mansoni infection}, 604201 (2)	
chr6	115941030	116100738	6q21-q22.3	6q22.1	606573	FRK, RAK, GTK	FYN-related kinase	FRK	2444	ENSG00000111816			Frk (MGI:103265)
chr6	116118908	116219936	6q21-q22.3	6q22.1	120110	COL10A1	Collagen X, alpha-1 polypeptide	COL10A1	1300	ENSG00000123500		Metaphyseal chondrodysplasia, Schmid type, 156500 (3), Autosomal dominant	Col10a1 (MGI:88445)
chr6	116254151	116441260	6q22	6q22.1	605942	DSE, SART2, EDSMC2	Dermatan sulfate epimerase	DSE	29940	ENSG00000111817		Ehlers-Danlos syndrome, musculocontractural type 2, 615539 (3), Autosomal recessive	Dse (MGI:2443455)
chr6	116274858	116280116	6q22-q23	6q22.1	604714	TSPYL1, TSPYL, SIDDT	Y-encoded testis-specific protein-like	TSPYL1	7259	ENSG00000189241		Sudden infant death with dysgenesis of the testes syndrome, 608800 (3), Autosomal recessive	Tspyl1 (MGI:1298395)
chr6	116461369	116463781	6q22.1	6q22.1	617305	FAM26F, INAM	Family with sequence similarity 26, member F	CALHM6	441168	ENSG00000188820			Fam26f (MGI:2443082)
chr6	116496482	116545609	6q22.1	6q22.1	614137	BET3L, TRAPPC3L	Bet3, S. cerevisiae, homolog-like	TRAPPC3L	100128327	ENSG00000173626			Trappc3l (MGI:3642034)
chr6	116598183	116633050	6q22.1	6q22.1	612647	RSPH4A, CILD11	Radial spoke head 4, Chlamydomonas, homolog of, A	RSPH4A	345895	ENSG00000111834		Ciliary dyskinesia, primary, 11, 612649 (3)	Rsph4a (MGI:3027894)
chr6	116677642	116741866	6q22.1	6q22.1	604545	KPNA5	Karyopherin alpha-5	KPNA5	3841	ENSG00000196911			
chr6	116877212	116932162	6q22.2	6q22.1	612659	RFX6, RFXDC1, MTCHRS	Regulatory factor X, 6	RFX6	222546	ENSG00000185002		Mitchell-Riley syndrome, 615710 (3), Autosomal recessive	Rfx6 (MGI:2445208)
chr6	117265557	117273564	6q21	6q22.1	609979	VGLL2, VGL2, VITO1	Vestigial-like 2	VGLL2	245806	ENSG00000170162			Vgll2 (MGI:2447460)
chr6	117287917	117426064	6q22	6q22.1	165020	ROS1, MCF3	Avian UR2 sarcoma virus oncogene (v-ros) homolog 1	ROS1	6098	ENSG00000047936			Ros1 (MGI:97999)
chr6	117560268	117602541	6q21	6q22.1	606845	GOPC, PIST, FIG, CAL	Golgi-associated PDZ and coiled-coil domains-containing protein	GOPC	57120	ENSG00000047932			Gopc (MGI:2149946)
chr6	117675459	117710726	6q22.31	6q22.1	610463	NUS1, NGBR, C6orf68, CDG1AA, MRD55	Nuclear undecaprenyl pyrophosphate synthase 1, S. cerevisiae, homolog of	NUS1	116150	ENSG00000153989	mutation identified in 1 CDG1AA family	?Congenital disorder of glycosylation, type 1aa, 617082 (3), Autosomal recessive; Mental retardation, autosomal dominant 55, with seizures, 617831 (3), Autosomal dominant	Nus1 (MGI:1196365)
chr6	118100000	130900000	6q22.3-q23.1		142470	HBFQTL2, FCP	Fetal hemoglobin quantitative trait locus 2		7954			Fetal hemoglobin quantitative trait locus 2, 142470 (2), Autosomal dominant	
chr6	118548262	118561714	6q22.1	6q22.31	172405	PLN, PLB, CMD1P, CMH18	Phospholamban	PLN	5350	ENSG00000198523		Cardiomyopathy, dilated, 1P, 609909 (3); Cardiomyopathy, hypertrophic, 18, 613874 (3), Autosomal dominant	
chr6	118813448	118935161	6q22.1-q22.33	6q22.31	610098	MCM9, MCMDC1, ODG4	Minichromosome maintenance complex component 9	MCM9	254394	ENSG00000111877		Ovarian dysgenesis 4, 616185 (3), Autosomal recessive	Mcm9 (MGI:1918817)
chr6	118894076	118909170	6q22.31	6q22.31	609189	ASF1A, CIA	Anti-silencing function 1, S. cerevisiae, homolog of, A	ASF1A	25842	ENSG00000111875			Asf1a (MGI:1913653)
chr6	119177200	119350618	6q22	6q22.31	604344	MAN1A1	Mannosidase, alpha, class 1A, member 1	MAN1A1	4121	ENSG00000111885			Man1a (MGI:104677)
chr6	121079493	121335383	6q22.31	6q22.31	615867	TBC1D32, BROMI	TBC1 domain family, member 32	TBC1D32	221322	ENSG00000146350			Tbc1d32 (MGI:2442827)
chr6	121435576	121449743	5q22.31	6q22.31	121014	GJA1, CX43, ODDD, SDTY3, ODOD, HSS, AVSD3, HLHS1, CMDR, EKVP3	Gap junction protein, alpha-1, 43kD (connexin 43)	GJA1	2697	ENSG00000152661	pseudogene on chr.5	Atrioventricular septal defect 3, 600309 (3), Autosomal dominant; Craniometaphyseal dysplasia, autosomal recessive, 218400 (3), Autosomal recessive; Erythrokeratodermia variabilis et progressiva 3, 617525 (3), Autosomal dominant; Hypoplastic left heart syndrome 1, 241550 (3), Autosomal recessive; Oculodentodigital dysplasia, 164200 (3), Autosomal dominant; Oculodentodigital dysplasia, autosomal recessive, 257850 (3), Autosomal recessive; Palmoplantar keratoderma with congenital alopecia, 104100 (3), Autosomal dominant; Syndactyly, type III, 186100 (3), Autosomal dominant	Gja1 (MGI:95713)
chr6	122399550	122433118	6q22.3	6q22.31	140581	HSF2	Heat-shock transcription factor 2	HSF2	3298	ENSG00000025156			Hsf2 (MGI:96239)
chr6	122443347	122471880	6q22.31	6q22.31	614548	SERINC1, TMS2, KIAA1253	Serine incorporator 1	SERINC1	57515	ENSG00000111897			Serinc1 (MGI:1926228)
chr6	122471916	122726372	6q22.31	6q22.31	606914	PKIB	Protein kinase, cAMP-dependent catalytic, inhibitor beta	PKIB	5570	ENSG00000135549			Pkib (MGI:101937)
chr6	122749200	122784076	6q22-q23	6q22.31	602965	FABP7, FABPB, BLBP	Fatty acid-binding protein 7	FABP7	2173	ENSG00000164434			Fabp7 (MGI:101916)
chr6	122788455	122809719	6q22.31	6q22.31	610728	SMPDL3A, ASML3A	Sphingomyelin phosphodiesterase, acid-like, 3A	SMPDL3A	10924	ENSG00000172594			Smpdl3a (MGI:1931437)
chr6	122995970	123072919	6q22.31	6q22.31	616945	CLVS2	Clavesin 2	CLVS2	134829	ENSG00000146352			Clvs2 (MGI:2443223)
chr6	123216338	123637092	6q22-q23	6q22.31	603283	TRDN, TDN, CPVT5	Triadin	TRDN	10345	ENSG00000186439		Ventricular tachycardia, catecholaminergic polymorphic, 5, with or without muscle weakness, 615441 (3), Autosomal recessive	Trdn (MGI:1924007)
chr6	123803841	124825651	6q21	6q22.31	609758	NKAIN2, TCBA	Na+/K+ transporting ATPase interacting 2	NKAIN2	154215	ENSG00000188580	fused with SUSP1 in T-cell lymphoma/leukemia		Nkain2 (MGI:1923447)
chr6	124908242	124963026	6q23	6q22.31	602532	STL	Six-twelve leukemia gene	RNF217-AS1	7955				
chr6	125153728	125264406	6q22.31	6q22.31	604069	TPD52L1, D53	Tumor protein D52-like 1	TPD52L1	7164	ENSG00000111907			Tpd52l1 (MGI:1298386)
chr6	125747638	125762242	6q21	6q22.31	604674	HEY2, HERP1, GRL	Hairy/enhancer of split-related with YRPW motif 2	HEY2	23493	ENSG00000135547			Hey2 (MGI:1341884)
chr6	125780942	125932029	6q22.33	6q22.31-q22.32	609752	NCOA7, ERAP140	Nuclear receptor coactivator 7	NCOA7	135112	ENSG00000111912			Ncoa7 (MGI:2444847)
chr6	125956714	125980243	6q22.33	6q22.32	609998	HINT3	Histidine triad nucleotide-binding protein 3	HINT3	135114	ENSG00000111911			Hint3 (MGI:1914097)
chr6	126339695	126483319	6q22.32	6q22.32	611264	CEMPW, C6orf173, CUG2	Centromeric protein W	CENPW	387103	ENSG00000203760			Cenpw (MGI:1913561)
chr6	127118670	127199480	6q22.2	6q22.33	610574	RSPO3, PWTSR, CRISTIN1	R-spondin family member 3	RSPO3	84870	ENSG00000146374			Rspo3 (MGI:1920030)
chr6	127263414	127289892	6q22.1-q22.33	6q22.33	612137	RNF146	Ring finger protein 146	RNF146	81847	ENSG00000118518			Rnf146 (MGI:1915281)
chr6	127288711	127344178	6q22.33	6q22.33	612136	ECHDC1	Enoyl coenzyme A hydratase domain-containing protein 1	ECHDC1	55862	ENSG00000093144			Echdc1 (MGI:1277169)
chr6	127708193	127918630	6q22.33	6q22.33	613607	THEMIS, GASP, SPOT, C6orf190	Thymocyte-expressed molecule involved in selection	THEMIS	387357	ENSG00000172673			Themis (MGI:2443552)
chr6	127968778	128520673	6q22.2-q22.3	6q22.33	602545	PTPRK	Protein-tyrosine phosphatase, receptor type, kappa	PTPRK	5796	ENSG00000152894			Ptprk (MGI:103310)
chr6	128883140	129516565	6q22-q23	6q22.33	156225	LAMA2, LAMM	Laminin, alpha-2 (merosin)	LAMA2	3908	ENSG00000196569		Muscular dystrophy, congenital merosin-deficient, 607855 (3), Autosomal recessive; Muscular dystrophy, congenital, due to partial LAMA2 deficiency, 607855 (3), Autosomal recessive	Lama2 (MGI:99912)
chr6	129576144	129710224	6q22-q24	6q22.33	613351	ARHGAP18	RHO GTPase-activating protein 18	ARHGAP18	93663	ENSG00000146376			Arhgap18 (MGI:1921160)
chr6	130000000	160600000	6q23-q25		607446	BMIQ3	Body mass index quantitative trait locus 3	BMIQ3	337895		max lod at D6S305	[Body mass index QTL3], 607446 (2)	
chr6	130000000	138300000	6q23		602067	CMD1F, CDCD3, LGMD1D	Cardiomyopathy, dilated-1F, autosomal dominant					Cardiomyopathy, dilated, 1F and limb-girdle muscular dystrophy type 1D, 602067 (2)	
chr6	130000000	138300000	6q23		609319	HCHGQ1	Hematocrit/hemoglobin quantitative trait locus 1		100381204			[Hematocrit/hemoglobin quantitative trait locus 1], 609319 (2)	
chr6	130000000	160600000	6q23-q25		608935	LNCR1	Lung cancer 1		450093		max hlod at D6S2436	{Lung cancer susceptibility}, 608935 (2)	
chr6	130000000	148500000	6q23-q24		611536	MAFD6, BPAD	Major affective disorder 6		100188844			{Major affective disorder 6}, 611536 (2)	
chr6	130000000	148500000	6q23-q24		602154	NTT	Noncoding transcript in T cells		7956				
chr6	130000000	138300000	6q23		180300	RA	Rheumatoid arthritis, susceptibility to				associated with SNP rs10499194 and rs6920220	{Rheumatoid arthritis, susceptibility to}, 180300 (2)	
chr6	130000000	138300000	6q23		614494	RP63	Retinitis pigmentosa 63	RP63	100862681		between D6S457 and D6S1656	Retinitis pigmentosa 63, 614494 (2), Autosomal dominant	
chr6	130000000	138300000	6q23		612378	SLEB13	Systemic lupus erythematosus, susceptibility to, 13		100196918		associated with rs5029939	{Systemic lupus erythematosus, susceptibility to, 13}, 612378 (2)	
chr6	130000000	142200000	6q23-q24.1		608220	SPG25	Spastic paraplegia 25, autosomal recessive, with disc herniation	SPG25	387583			Spastic paraplegia 25, autosomal recessive, 608220 (2), Autosomal recessive	
chr6	130827954	131063321	6q22-q23	6q23.1-q23.2	603237	EPB41L2	Erythrocyte membrane protein band 4.1-like 2	EPB41L2	2037	ENSG00000079819			Epb41l2 (MGI:103009)
chr6	131573158	131584331	6q23	6q23.2	608313	ARG1	Arginase, liver	ARG1	383	ENSG00000118520		Argininemia, 207800 (3), Autosomal recessive	Arg1 (MGI:88070)
chr6	131573965	131628238	6q23.2	6q23.2	605042	MED23, MRT18	Mediator complex subunit 23	MED23	9439	ENSG00000112282		Mental retardation, autosomal recessive 18, 614249 (3), Autosomal recessive	Med23 (MGI:1917458)
chr6	131637234	131747412	6q22	6q23.2	602182	ENPP3, PDNP3	Ectonucleotide pyrophosphatase/phosphodiesterase 3	ENPP3	5169	ENSG00000154269			Enpp3 (MGI:2143702)
chr6	131808015	131895154	6q22-q23	6q23.2	173335	ENPP1, PDNP1, NPPS, M6S1, PCA1, ARHR2, COLED	Ectonucleotide pyrophosphatase/phosphodiesterase 1 (Ly-41 antigen, mouse, homolog of)	ENPP1	5167	ENSG00000197594		Arterial calcification, generalized, of infancy, 1, 208000 (3), Autosomal recessive; Cole disease, 615522 (3), Autosomal dominant; {Diabetes mellitus, non-insulin-dependent, susceptibility to}, 125853 (3), Autosomal dominant; Hypophosphatemic rickets, autosomal recessive, 2, 613312 (3); {Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Enpp1 (MGI:97370)
chr6	131948175	131951377	6q23.1	6q23.2	121009	CTGF, NOV2	Connective tissue growth factor	CTGF	1490	ENSG00000118523	proximal to MYB		Ctgf (MGI:95537)
chr6	132296054	132401533	6q23.1-q23.3	6q23.2	609000	MOXD1, MOX	Monooxygenase, DBH-like, 1	MOXD1	26002	ENSG00000079931			Moxd1 (MGI:1921582)
chr6	132457523	132513471	6q23.2	6q23.2	603217	STX7	Syntaxin 7	STX7	8417	ENSG00000079950			Stx7 (MGI:1858210)
chr6	132538287	132539335	6q23.2	6q23.2	608282	TAR3, TA3	Trace amine receptor 3	TAAR9	134860	ENSG00000237110			Taar9 (MGI:3527454)
chr6	132552683	132553730	6q23.2	6q23.2	606927	GPR102, TA5	G protein-coupled receptor 102	TAAR8	83551	ENSG00000146385			Taar8c,Taar8b,Taar8a (MGI:2685995,MGI:3527452,MGI:2685076)
chr6	132570321	132571358	6q23.2	6q23.2	608923	TAAR6, TRAR4	Trace amine-associated receptor 6	TAAR6	319100	ENSG00000146383			Taar6 (MGI:2685074)
chr6	132588591	132589737	6q23.2	6q23.2	607405	PNR	Putative neurotransmitter receptor	TAAR5	9038	ENSG00000135569			Taar5 (MGI:2685073)
chr6	132617149	132624274	6q24	6q23.2	604849	TAAR2, GPR58	Trace amine-associated receptor 2	TAAR2	9287	ENSG00000146378			Taar2 (MGI:2685071)
chr6	132644897	132646025	6q23.1	6q23.2	609333	TAAR1, TA1	Trace amine-associated receptor 1	TAAR1	134864	ENSG00000146399			Taar1 (MGI:2148258)
chr6	132680857	132714054	6q23-q24	6q23.2	603570	VNN1, HDLCQ8	Vanin 1	VNN1	8876	ENSG00000112299		[High density lipoprotein cholesterol level QTL 8] (3)	Vnn1 (MGI:108395)
chr6	132722786	132734764	6q23-q24	6q23.2	606592	VNN3	Vanin 3	VNN3	55350	ENSG00000093134			
chr6	132743502	132763488	6q23-q24	6q23.2	603571	VNN2	Vanin 2	VNN2	8875	ENSG00000112303			
chr6	132769367	132798655	6q22.3	6q23.2	613361	C6orf192	Chromosome 6 open reading frame 192	SLC18B1	116843	ENSG00000146409			Slc18b1 (MGI:1923556)
chr6	132814568	132817563	6q	6q23.2	603660	RPS12	Ribosomal protein S12	RPS12	6206	ENSG00000112306			Rps12 (MGI:98105)
chr6	133240339	133532119	6q23	6q23.2	603550	EYA4, DFNA10, CMD1J	Eyes absent, Drosophila, homolog of, 4	EYA4	2070	ENSG00000112319		Cardiomyopathy, dilated, 1J, 605362 (3); Deafness, autosomal dominant 10, 601316 (3), Autosomal dominant	Eya4 (MGI:1337104)
chr6	133502251	133889005	6q23.2	6q23.2	616058	TARID	TCF21 antisense RNA inducing promoter demethylation	TARID	100507308				
chr6	133889120	133895536	6q23-q24	6q23.2	603306	TCF21, POD1	Transcription factor-21 (epicardin; podocyte-expressed 1)	TCF21	6943	ENSG00000118526			Tcf21 (MGI:1202715)
chr6	133987580	134052650	6q23.2	6q23.2	610372	SLC2A12, GLUT12	Solute carrier family 2 (facilitated glucose transporter), member 12	SLC2A12	154091	ENSG00000146411			Slc2a12 (MGI:3052471)
chr6	134169245	134318111	6q23	6q23.2	602958	SGK1	Serum/glucocorticoid-regulated kinase 1	SGK1	6446	ENSG00000118515			Sgk1 (MGI:1340062)
chr6	134700000	138300000	6q23.3		614645	MPVQTL5	Mean platelet volume quantitative trait locus 5		100887752		associated with rs9399137	Mean platelet volume QTL5, 614645 (2)	
chr6	134917389	134950121	6q23.2	6q23.3	606467	ALDH8A1, ALDH12	Aldehyde dehydrogenase 8 family, member A1	ALDH8A1	64577	ENSG00000118514			Aldh8a1 (MGI:2653900)
chr6	134960377	135054897	6q24	6q23.3	612450	HBS1L, KIAA1038, ERFS	HBS1-like protein	HBS1L	10767	ENSG00000112339			Hbs1l (MGI:1891704)
chr6	135181314	135219172	6q22	6q23.3	189990	MYB	Avian myeloblastosis viral (v-myb) oncogene homolog	MYB	4602	ENSG00000118513		{T-cell acute lymphoblastic leukemia} (3)	Myb (MGI:97249)
chr6	135283971	135497770	6q23.3	6q23.3	608894	AHI1	Abelson helper integration site 1	AHI1	54806	ENSG00000135541		Joubert syndrome 3, 608629 (3), Autosomal recessive	Ahi1 (MGI:87971)
chr6	135851695	136195570	6q23.3	6q23.3	604645	PDE7B	Phosphodiesterase 7B, cAMP-specific, high-affinity	PDE7B	27115	ENSG00000171408			Pde7b (MGI:1352752)
chr6	136256862	136289850	6q22-q23	6q23.3	612588	BCLAF1, BTF, KIAA0164	BCL2-associated transcription factor 1	BCLAF1	9774	ENSG00000029363			Bclaf1 (MGI:1917580)
chr6	136342280	136550818	6q22-q25	6q23.3	604108	MAP7, EMAP115	Microtubule-associated protein-7	MAP7	9053	ENSG00000135525			Map7 (MGI:1328328)
chr6	136557045	136793097	6q22.33	6q23.3	602448	MAP3K5, MEKK5, MAPKKK5, ASK1	Mitogen-activated protein kinase kinase kinase 5	MAP3K5	4217	ENSG00000197442			Map3k5 (MGI:1346876)
chr6	136821682	136913933	6q23.3	6q23.3	601757	PEX7, RCDP1, PBD9B	Peroxisomal biogenesis factor-7	PEX7	5191	ENSG00000112357		Peroxisome biogenesis disorder 9B, 614879 (3); Rhizomelic chondrodysplasia punctata, type 1, 215100 (3), Autosomal recessive	Pex7 (MGI:1321392)
chr6	136922240	136925659	6q23.3	6q23.3	612519	SLC35D3	Solute carrier family 35, member D3	SLC35D3	340146	ENSG00000182747			Slc35d3 (MGI:1923407)
chr6	136999970	137045179	6q23	6q23.3	605620	IL20RA	Interleukin 20 receptor, alpha	IL20RA	53832	ENSG00000016402			Il20ra (MGI:3605069)
chr6	137143819	137173647	6q24.1-q24.2	6q23.3	606648	IL22BP, IL22RA2	Interleukin 22-binding protein	IL22RA2	116379	ENSG00000164485			Il22ra2 (MGI:2665114)
chr6	137197483	137220350	6q23.3	6q23.3	107470	IFNGR1, IMD27A, IMD27B	Immune interferon, receptor for	IFNGR1	3459	ENSG00000027697		{H. pylori infection, susceptibility to}, 600263 (3); {Hepatitis B virus infection, susceptibility to}, 610424 (3); Immunodeficiency 27A, mycobacteriosis, AR, 209950 (3), Autosomal recessive; Immunodeficiency 27B, mycobacteriosis, AD, 615978 (3), Autosomal dominant; {Tuberculosis infection, protection against}, 607948 (3); {Tuberculosis, susceptibility to}, 607948 (3)	Ifngr1 (MGI:107655)
chr6	137492198	137494393	6q23.3	6q23.3	609323	OLIG3, BHLHB7	Oligodendrocyte lineage transcription factor 3	OLIG3	167826	ENSG00000177468			Olig3 (MGI:2149955)
chr6	137866316	137883313	6q23	6q23.3	191163	TNFAIP3, A20, OTUD7C, AISBL	Tumor necrosis factor-alpha-induced protein 3	TNFAIP3	7128	ENSG00000118503		Autoinflammatory syndrome, familial, Behcet-like, 616744 (3), Autosomal dominant	Tnfaip3 (MGI:1196377)
chr6	138088504	138107522	6q23.3	6q23.3	609301	PERP	p53 effector related to PMP22	PERP	64065	ENSG00000112378			Perp (MGI:1929938)
chr6	138161689	138344662	6q23.3-q24.1	6q23.3-q24.1	617411	ARFGEF3, BIG3, KIAA1244	ADP-ribosylation factor guanine nucleotide exchange factor 3	ARFGEF3	57221	ENSG00000112379			Arfgef3 (MGI:106387)
chr6	138215985	138218489	6q23-q24	6q23.3	605669	PBOV1, UROC28, UC28	Prostate and breast cancer overexpressed 1	PBOV1	59351	ENSG00000254440			
chr6	138300000	160600000	6q24-q25		612863	DEL6q24q25, C6DELq25q25	Chromosome 6q24-q25 deletion syndrome					Chromosome 6q25-q25 deletion syndrome, 612863 (4)	
chr6	138300000	160600000	6q24-q25		606255	STQTL1	Stature quantitative trait locus 1				associated with rs4896582 and rs3748069	{Stature QTL 1}, 606255 (2)	
chr6	138403530	138413444	6q24	6q24.1	605825	C6orf34, SOUL	Soul, chicken, homolog of	HEBP2	23593	ENSG00000051620			Hebp2 (MGI:1860084)
chr6	138773516	138793318	6q24.1	6q24.1	615353	CCDC28A, C6orf80	Coiled-coil domain-containing 28A	CCDC28A	25901	ENSG00000024862			Ccdc28a (MGI:2443508)
chr6	138904014	138988260	6q23.1-q24.1	6q24.1	614825	REPS1, NBIA7	RALBP1-associated EPS domain-containing protein 1	REPS1	85021	ENSG00000135597	mutation identified in 1 NBIA7 family	?Neurodegeneration with brain iron accumulation 7, 617916 (3), Autosomal recessive	Reps1 (MGI:1196373)
chr6	139135111	139180808	6q24.1	6q24.1	607977	HECA, HDC	Headcase, Drosophila, homolog of	HECA	51696	ENSG00000112406			Heca (MGI:2685715)
chr6	139372254	139374649	6q23.3	6q24.1	602937	CITED2, MRG1, P35SRJ, VSD2, ASD8	CBP/p300-interacting transactivator, with glu/asp-rich C-terminal domain, 2	CITED2	10370	ENSG00000164442	?pseudogene on 1q22	Atrial septal defect 8, 614433 (3), Autosomal dominant; Ventricular septal defect 2, 614431 (3), Autosomal dominant	Cited2 (MGI:1306784)
chr6	142074483	142147204	6q21-qter	6q24.1	162341	NMBR	Neuromedin B receptor	NMBR	4829	ENSG00000135577			Nmbr (MGI:1100525)
chr6	142147161	142220947	6q24.1	6q24.1-q24.2	610902	C6orf55, SBP1, LIP5, VTA1, DRG1	SKD1-binding protein 1	VTA1	51534	ENSG00000009844			Vta1 (MGI:1913451)
chr6	142200000	155200000	6q24.2-q25.2		127500	DUH1, DUH	Dyschromatosis universalis hereditaria 1		387570		max lod at D6S1553	Dyschromatosis universalis hereditaria 1, 127500 (2), Autosomal dominant	
chr6	142301918	142446265	6q24.1	6q24.2	612243	ADGRG6, PR126, VIGR, LCCS9	Adhesion G protein-coupled receptor G6	ADGRG6	57211	ENSG00000112414		Lethal congenital contracture syndrome 9, 616503 (3), Autosomal recessive	Adgrg6 (MGI:1916151)
chr6	142751466	142945755	6q23-q24	6q24.2	143054	HIVEP2, MRD43	Human immunodeficiency virus type I enhancer-binding protein-2	HIVEP2	3097	ENSG00000010818		Mental retardation, autosomal dominant 43, 616977 (3), Autosomal dominant	Hivep2 (MGI:1338076)
chr6	143422831	143450749	6q24.2	6q24.2	615388	ADAT2, TAD2	Adenosine deaminase, tRNA-specific, 2	ADAT2	134637	ENSG00000189007			Adat2 (MGI:1914007)
chr6	143450780	143490615	6q24.2	6q24.2	603164	PEX3, PBD10A, PBD10B	Peroxisomal biogenesis factor-3	PEX3	8504	ENSG00000034693	mutation identified in 1 PBD10B patient	Peroxisome biogenesis disorder 10A (Zellweger), 614882 (3), Autosomal recessive; ?Peroxisome biogenesis disorder 10B, 617370 (3), Autosomal recessive	Pex3 (MGI:1929646)
chr6	143494811	143511882	6q24.2	6q24.2	136820	FUCA2	Fucosidase, alpha-L- 2, plasma	FUCA2	2519	ENSG00000001036	linked to PLG		Fuca2 (MGI:1914098)
chr6	143608179	143831184	6q24.2	6q24.2	608724	PHACTR2, KIAA0680	Phosphatase and actin regulator 2	PHACTR2	9749	ENSG00000112419			Phactr2 (MGI:2446138)
chr6	143940299	144064598	6q24	6q24.2	603044	PLAGL1, ZAC, LOT1	Pleomorphic adenoma gene-like 1 (ZAC tumor suppressor)	PLAGL1	5325	ENSG00000118495	relaxed imprinting in TNDM	{Diabetes mellitus, transient neonatal}, 601410 (1)	Plagl1 (MGI:1100874)
chr6	144004915	144008729	6q24	6q24.2	606546	HYMAI	Hydatidiform mole-associated and imprinted transcript	HYMAI	57061				
chr6	144094880	144095616	6q24.2	6q24.2	617847	SF3B5, SF3B10	Splicing factor 3B, subunit 5	SF3B5	83443	ENSG00000169976			Sf3b5 (MGI:1913375)
chr6	144140043	144191938	6q24	6q24.2	605014	STX11, FHL4, HPLH4, HLH4	Syntaxin-11	STX11	8676	ENSG00000135604		Hemophagocytic lymphohistiocytosis, familial, 4, 603552 (3), Autosomal recessive	Stx11 (MGI:1921982)
chr6	144284954	144853033	6q24	6q24.2	128240	UTRN, DMDL, DRP1	Utrophin (homologous to dystrophin)	UTRN	7402	ENSG00000152818	near dy in mouse		Utrn (MGI:104631)
chr6	145382539	145736020	6q24	6q24.3	607566	EPM2A, MELF, EPM2	Laforin	EPM2A	7957	ENSG00000112425		Epilepsy, progressive myoclonic 2A (Lafora), 254780 (3), Autosomal recessive	Epm2a (MGI:1341085)
chr6	145798134	145864408	6q24	6q24.3	609101	FBXO30, FBX30	F-box only protein 30	FBXO30	84085	ENSG00000118496			Fbxo30 (MGI:1919115)
chr6	146027633	146437597	6q24	6q24.3	604473	GRM1, MGLUR1, GRM1A, SCAR13, SCA44	Glutamate receptor, metabotropic, 1	GRM1	2911	ENSG00000152822		Spinocerebellar ataxia 44, 617691 (3), Autosomal dominant; Spinocerebellar ataxia, autosomal recessive 13, 614831 (3), Autosomal recessive	Grm1 (MGI:1351338)
chr6	146543691	146554955	6q24.3	6q24.3	612906	RAB32	Ras-associated protein RAB32	RAB32	10981	ENSG00000118508			Rab32 (MGI:1915094)
chr6	146598964	146815461	6q24.3	6q24.3	614630	ADGB	Androglobin	ADGB	79747	ENSG00000118492			Adgb (MGI:3605549)
chr6	147204183	147390475	6q24.3	6q24.3	604586	STXBP5	Syntaxin-binding protein 5 (tomosyn)	STXBP5	134957	ENSG00000164506			Stxbp5 (MGI:1926058)
chr6	148193439	148552049	6q24.3	6q24.3-q25.1	607955	SASH1, KIAA0790	Sterile alpha motifs- and SH3 domain-containing protein 1	SASH1	23328	ENSG00000111961			Sash1 (MGI:1917347)
chr6	148500000	160600000	6q25		612114	BMND11	Bone mineral density quantitative trait locus 11		100188884		associated with rs4870044, rs1038304, and rs1999805	[Bone mineral density QTL 11], 612114 (2)	
chr6	148500000	160600000	6q25		612521	IDDM21	Diabetes mellitus, insulin-dependent, 21				associated with rs1738074	{Diabetes mellitus, insulin-dependent, 21}, 612521 (2)	
chr6	148500000	170805979	6q25-q27		600883	IDDM8	Insulin-dependent diabetes mellitus-8	IDDM8	3407			{Diabetes mellitus, insulin-dependent, 8}, 600883 (2)	
chr6	148500000	164100000	6q25-q26		180020	RCD1	Retinal cone dystrophy-1	RCD1	5953			?Retinal cone dystrophy-1, 180020 (2), Autosomal dominant	
chr6	148745890	149076989	6q25.1	6q25.1	610752	UST	Uronyl 2-sulfotransferase	UST	10090	ENSG00000111962			Ust (MGI:2442406)
chr6	149217923	149411612	6q25	6q25.1	605101	TAB2, MAP3K7IP2, KIAA0733, CHTD2	Tak1 (MAP3K7) binding protein 2	TAB2	23118	ENSG00000055208		Congenital heart defects, nonsyndromic, 2, 614980 (3), Autosomal dominant	Tab2 (MGI:1915902)
chr6	149400358	149401045	6q25	6q25.1	608829	SUMO4, IDDM5	Small ubiquitin-like modifier 4	SUMO4	387082	ENSG00000177688		{Diabetes mellitus, insulin-dependent, 5}, 600320 (3)	
chr6	149447629	149485011	6q25.1	6q25.1	611106	ZC3H12D, p34, C6orf95	Zinc finger CCCH domain-containing protein 12D	ZC3H12D	340152	ENSG00000178199			Zc3h12d (MGI:3045313)
chr6	149504494	149546101	6q24-q25	6q25.1	607609	PPIL4	Peptidyl-prolyl isomerase-like 4	PPIL4	85313	ENSG00000131013			Ppil4 (MGI:1914668)
chr6	149594872	149649017	6q25.1	6q25.1	606696	KATNA1	Katanin, p60 subunit, A1	KATNA1	11104	ENSG00000186625			Katna1 (MGI:1344353)
chr6	149658152	149718255	6q25.1	6q25.1	603473	LATS1	Large tumor suppressor, Drosophila, homolog of, 1	LATS1	9113	ENSG00000131023			Lats1 (MGI:1333883)
chr6	149724314	149746571	6q24.3	6q25.1	608141	NUP43	Nucleoporin, 43kD	NUP43	348995	ENSG00000120253			Nup43 (MGI:1917162)
chr6	149749694	149811420	6q22.3-q24	6q25.1	176851	PCMT1	Protein-L-isoaspartate (D-aspartate) O-methyltransferase	PCMT1	5110	ENSG00000120265			
chr6	149941937	149949234	6q25	6q25.1	605698	ULBP2	UL16-binding protein 2	ULBP2	80328	ENSG00000131015			
chr6	149963973	149973714	6q25	6q25.1	605697	ULBP1	UL16-binding protein 1	ULBP1	80329	ENSG00000111981			Ulbp1 (MGI:1925027)
chr6	150018333	150025595	6q24.2-q25.3	6q25.1	611047	RAET1L	Retinoic acid early transcript 1L	RAET1L	154064	ENSG00000155918			
chr6	150061045	150069146	6q25	6q25.1	605699	ULBP3	UL16-binding protein 3	ULBP3	79465	ENSG00000131019			
chr6	150143051	150250391	6q24.3-q25.3	6q25.1	613242	PPP1R14C, KEPI	Protein phosphatase 1, regulatory subunit 14C	PPP1R14C	81706	ENSG00000198729			Ppp1r14c (MGI:1923392)
chr6	150368853	150404628	6q24-q25	6q25.1	612025	IYD, DEHAL1, TDH4	Iodotyrosine deiodinase	IYD	389434	ENSG00000009765		Thyroid dyshormonogenesis 4, 274800 (3), Autosomal recessive	Iyd (MGI:1917587)
chr6	150865678	151101886	6q25.2	6q25.1	611427	MTHFD1L, MTC1THFS	Methylenetetrahydrofolate dehydrogenase 1-like, NADP(+)-dependent	MTHFD1L	25902	ENSG00000120254			Mthfd1l (MGI:1924836)
chr6	151364114	151391704	6q25.1	6q25.1	616595	ZBTB2, ZNF437, KIAA1483	Zinc finger- and BTB domain-containing protein 2	ZBTB2	57621	ENSG00000181472			Zbtb2 (MGI:2685949)
chr6	151404547	151452180	6q25	6q25.1	614917	RMND1, COXPD11	Required for meiotic nuclear division 1, S. cerevisiae, homolog of	RMND1	55005	ENSG00000155906		Combined oxidative phosphorylation deficiency 11, 614922 (3), Autosomal recessive	Rmnd1 (MGI:1913334)
chr6	151452257	151470100	6q25.1	6q25.1	616332	ARMT1, C6orf211	Acidic residue methyltransferase 1	ARMT1	79624	ENSG00000146476			Armt1 (MGI:1920669)
chr6	151654147	152129603	6q25.1	6q25.1-q25.2	133430	ESR1, ESR, ESTRR	Estrogen receptor 1	ESR1	2099	ENSG00000091831		{Atherosclerosis, susceptibility to} (3); {Breast cancer}, 114480 (1), Autosomal dominant; Estrogen resistance, 615363 (3), Autosomal recessive; {HDL response to hormone replacement, augmented} (3); {Migraine, susceptibility to}, 157300 (3), Autosomal dominant; {Myocardial infarction, susceptibility to}, 608446 (3)	Esr1 (MGI:1352467)
chr6	152121683	152637398	6q25	6q25.2	608441	SYNE1, KIAA0796, KIAA1756, KIAA1262, SCAR8, EDMD4	Spectrin repeat-containing nuclear envelope protein 1 (nesprin 1)	SYNE1	23345	ENSG00000131018		Emery-Dreifuss muscular dystrophy 4, autosomal dominant, 612998 (3), Autosomal dominant; Spinocerebellar ataxia, autosomal recessive 8, 610743 (3), Autosomal recessive	Syne1 (MGI:1927152)
chr6	152697894	152747174	6q25	6q25.2	616805	MYCT1, MTLC	MYC target in myeloid cells 1	MYCT1	80177	ENSG00000120279			Myct1 (MGI:1915882)
chr6	152750796	152759764	6q26-q27	6q25.2	192320	VIP	Vasoactive intestinal peptide	VIP	7432	ENSG00000146469			Vip (MGI:98933)
chr6	152970518	152983618	6q25-q26	6q25.2	606013	FBXO5, FBX5, EMI1	F-box only protein 5	FBXO5	26271	ENSG00000112029			Fbxo5 (MGI:1914391)
chr6	154010495	154246866	6q24-q25	6q25.2	600018	OPRM1	Opioid receptor, mu-1	OPRM1	4988	ENSG00000112038			Oprm1 (MGI:97441)
chr6	154405146	154510658	6q25.2	6q25.2	617476	CNKSR3, CNK3	CNKSR family, member 3	CNKSR3	154043	ENSG00000153721			Cnksr3 (MGI:2674130)
chr6	154733377	154834243	6q25.2	6q25.2	616024	SCAF8, KIAA1116	SR-related C-terminal domain-associated factor 8	SCAF8	22828	ENSG00000213079			Scaf8 (MGI:1925212)
chr6	155090288	155257722	6q25.2-q25.3	6q25.2-q25.3	604709	TIAM2	T-cell lymphoma invasion and metastasis 2	TIAM2	26230	ENSG00000146426			Tiam2 (MGI:1344338)
chr6	155200000	160600000	6q25.3		612010	CELIAC12	Celiac disease, susceptibility to, 12		100188874		in LD block containing TAGAP	{Celiac disease, susceptibility to, 12}, 612010 (2)	
chr6	155229870	155314496	6q25	6q25.3	607033	TFB1M, CGI75	Transcription factor B1, mitochondrial	TFB1M	51106	ENSG00000029639			Tfb1m (MGI:2146851)
chr6	155395367	155455902	6q25.1	6q25.3	607105	NOX3	NADPH oxidase 3	NOX3	50508	ENSG00000074771			Nox3 (MGI:2681162)
chr6	156777846	157210778	6q25.1	6q25.3	614556	ARID1B, BAF250B, KIAA1235, MRD12, CSS1	AT-rich interaction domain-containing protein 1B	ARID1B	57492	ENSG00000049618		Coffin-Siris syndrome 1, 135900 (3), Autosomal dominant	Arid1b (MGI:1926129)
chr6	157716045	157945076	6q26.3	6q25.3	605952	SNX9, SH3PX1	Sorting nexin 9	SNX9	51429	ENSG00000130340			Snx9 (MGI:1913866)
chr6	157981855	158099175	6q25.3	6q25.3	609410	SYNJ2, KIAA0348	Synaptojanin 2	SYNJ2	8871	ENSG00000078269			Synj2 (MGI:1201671)
chr6	158109503	158168279	6q25.3	6q25.3	614725	SERAC1, MEGDEL	Serine active site-containing protein 1	SERAC1	84947	ENSG00000122335		3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome, 614739 (3), Autosomal recessive	Serac1 (MGI:2447813)
chr6	158168315	158199343	6q25.3	6q25.3	608780	GTF2H5, TTD3, TFB5, C6orf175, TTDA	General transcription factor IIH, polypeptide 5	GTF2H5	404672	ENSG00000272047		Trichothiodystrophy 3, photosensitive, 616395 (3)	Gtf2h5 (MGI:107227)
chr6	158536431	158635434	6q25.3	6q25.3	613209	TMEM181, GPR178, KIAA1423	Transmembrane protein 181	TMEM181	57583	ENSG00000146433			Tmem181a (MGI:1924356)
chr6	158636473	158644785	6q25.2-q25.3	6q25.3	601554	TCTEL1	T-complex-associated-testis-expressed 1-like 1	DYNLT1	6993	ENSG00000146425			Dynlt1c,Dynlt1b,Dynlt1a,Dynlt1f (MGI:3807476,MGI:3780996,MGI:98643,MGI:3807506)
chr6	158765740	158819423	6q25.3	6q25.3	123900	EZR, VIL2, CVL	Ezrin	EZR	7430	ENSG00000092820	coamplified with MYB		Ezr (MGI:98931)
chr6	158947011	159000425	6q25.3	6q25.3	615876	RSPH3, RSHL2, RSP3, CILD32	Radial spoke head 3, Chlamydomonas, homolog of	RSPH3	83861	ENSG00000130363		Ciliary dyskinesia, primary, 32, 616481 (3), Autosomal recessive	Rsph3a,Rsph3b (MGI:1914082,MGI:3630308)
chr6	159034467	159045151	6q25.3	6q25.3	609667	TAGAP	T-cell activation GTPase-activating protein	TAGAP	117289	ENSG00000164691			Tagap (MGI:3615484)
chr6	159169396	159272107	6q25	6q25.3	609991	FNDC1, AGS8, KIAA1866	Fibronectin type III domain-containing protein 1	FNDC1	84624	ENSG00000164694			
chr6	159679063	159762528	6q25.3	6q25.3	147460	SOD2, MNSOD, MVCD6	Superoxide dismutase-2, mitochondrial	SOD2	6648	ENSG00000112096		{Microvascular complications of diabetes 6}, 612634 (3)	Sod2 (MGI:98352)
chr6	159726695	159756318	6q25.3	6q25.3	605442	WTAP	Wilms tumor 1-associating protein	WTAP	9589	ENSG00000146457			Wtap (MGI:1926395)
chr6	159761956	159779111	6q25.3-q26	6q25.3	100678	ACAT2	Acetyl-Coenzyme A acetyltransferase 2 (acetoacetyl Coenzyme A thiolase)	ACAT2	39	ENSG00000120437	encoded on strand opposite TCP1	?ACAT2 deficiency, 614055 (1), Isolated cases	Acat3,Acat2 (MGI:109182,MGI:87871)
chr6	159778497	159789702	6q25.3-q26	6q25.3	186980	TCP1	T-complex locus TCP-1	TCP1	6950	ENSG00000120438	tightly linked to PLG; ~15cM proximal to TCP10; overlap with ACAT2		Tcp1 (MGI:98535)
chr6	159789811	159798428	6q25.3	6q25.3	611831	MRPL18	Mitochondrial ribosomal protein L18	MRPL18	29074	ENSG00000112110			Mrpl18 (MGI:1914931)
chr6	159906941	159908075	6q24-q27	6q25.3	165180	MAS1	Oncogene MAS1	MAS1	4142	ENSG00000130368			Mas1 (MGI:96918)
chr6	159969098	160111503	6q26	6q25.3	147280	IGF2R, MPRI	Insulin-like growth factor-2 receptor (mannose-6-phosphate receptor, cation-independent)	IGF2R	3482	ENSG00000197081	behaves as a tumor suppressor	Hepatocellular carcinoma, somatic, 114550 (3)	Igf2r (MGI:96435)
chr6	160003290	160007663	6q26	6q25.3	604893	AIRN, AIR	Antisense IGF2R RNA, noncoding	AIRN	100271873				
chr6	160121807	160160589	6q26	6q25.3	602607	SLC22A1, OCT1	Solute carrier family 22 (organic cation transporter), member 1	SLC22A1	6580	ENSG00000175003			Slc22a1 (MGI:108111)
chr6	160216761	160258930	6q26	6q25.3	602608	SLC22A2, OCT2	Solute carrier family 22 (organic cation transporter), member 2	SLC22A2	6582	ENSG00000112499			Slc22a2 (MGI:1335072)
chr6	160348372	160454981	6q27	6q25.3	604842	SLC22A3, EMT	Solute carrier family 22 (extraneuronal monoamine transporter), member 3	SLC22A3	6581	ENSG00000146477			Slc22a3 (MGI:1333817)
chr6	160466554	160511123	6q26-q27	6q25.3	611682	LPAL2, APOARGC	Lipoprotein(a)-like 2	LPAL2	80350				
chr6	160531482	160666374	6q27	6q25-q26	152200	LPA	Apolipoprotein Lp(a)	LPA	4018	ENSG00000198670	absent in mice	{Coronary artery disease, susceptibility to} (1); [LPA deficiency, congenital] (3)	
chr6	160600000	170805979	6q26-q27		608219	DFNB38	Deafness, autosomal recessive 38	DFNB38	337991			Deafness, autosomal recessive 38, 608219 (2), Autosomal recessive	
chr6	160600000	170805979	6q26-q27		614347	MRT28	Mental retardation, autosomal recessive 28	MRT28	100852396		between rs6935718 and rs3886091	Mental retardation, autosomal recessive 28, 614347 (2), Autosomal recessive	
chr6	160702192	160754053	6q26	6q26	173350	PLG	Plasminogen	PLG	5340	ENSG00000122194	20cM from TCP10A	Dysplasminogenemia, 217090 (3), Autosomal recessive; Plasminogen deficiency, type I, 217090 (3), Autosomal recessive	Plg (MGI:97620)
chr6	160991520	161117384	6q26	6q26	602425	MAP3K4, MEKK4, MTK1, MAPKKK4	Mitogen-activated protein kinase kinase kinase 4	MAP3K4	4216	ENSG00000085511			Map3k4 (MGI:1346875)
chr6	161129979	161274107	6q26	6q26	614795	AGPAT4	1-acylglycerol-3-phosphate O-acyltransferase 4	AGPAT4	56895	ENSG00000026652			Agpat4 (MGI:1915512)
chr6	161347416	162727801	6q25.2-q27	6q26	602544	PRKN, PARK2, PDJ, LPRS2	Parkin	PRKN	5071	ENSG00000185345	shares 5' regulatory region and both 3' UTRs with PACRG	Adenocarcinoma of lung, somatic, 211980 (3); Adenocarcinoma, ovarian, somatic, 167000 (3); {Leprosy, susceptibility to}, 607572 (3); Parkinson disease, juvenile, type 2, 600116 (3), Autosomal recessive	Park2 (MGI:1355296)
chr6	162726869	163315491	6q25-q27	6q26	608427	PACRG	Parkin coregulated gene	PACRG	135138	ENSG00000112530	shares 5' regulatory region and both 3' UTRs with PARK2		Pacrg (MGI:1916560)
chr6	163413064	163413949	6q26	6q26	615930	CAHM, LINC00468	Colorectal adenocarcinoma hypermethylated gene, noncoding	CAHM	100526820				
chr6	163414485	163578595	6q26	6q26	609590	QKI, QK1	Quaking, mouse, homolog of	QKI	9444	ENSG00000112531			Qk (MGI:97837)
chr6	164100000	170805979	6q27		215400	CHDM	Chordoma				associated with duplication of the T gene	{Chordoma, susceptibility to}, 215400 (4), Autosomal dominant	
chr6	164100000	170805979	6q27		616837	HPAT5	Human pluripotency-associated transcript 5, noncoding						
chr6	164100000	170805979	6q27		611382	KAZA3	Kala-azar, susceptibility to, 3		101241899			{Kala-azar, susceptibility to, 3}, 611382 (2)	
chr6	165327286	165988114	6q27	6q27	610652	PDE10A, IOLOD, ADSD2	Phosphodiesterase 10A	PDE10A	10846	ENSG00000112541		Dyskinesia, limb and orofacial, infantile-onset, 616921 (3), Autosomal recessive; Striatal degeneration, autosomal dominant, 616922 (3), Autosomal dominant	Pde10a (MGI:1345143)
chr6	166157643	166168668	6q27	6q27	601397	T, TFT, SAVA	Brachyury, mouse, homolog of	TBXT	6862	ENSG00000164458		{Neural tube defects, susceptibility to}, 182940 (3), Autosomal dominant; Sacral agenesis with vertebral anomalies, 615709 (3), Autosomal recessive	T (MGI:98472)
chr6	166364918	166383012	6q27	6q27	614738	BRP44L, MPC1, MPYCD	Brain protein 44-like	MPC1	51660	ENSG00000060762		Mitochondrial pyruvate carrier deficiency, 614741 (3), Autosomal recessive	Mpc1 (MGI:1915240)
chr6	166409363	166862550	6q27	6q27	601685	RPS6KA2, RSK3	Ribosomal protein S6 kinase, 90kD, 2	RPS6KA2	6196	ENSG00000071242			Rps6ka2 (MGI:1342290)
chr6	166929508	166956588	6q27	6q27	612944	RNASET2, RNASE6PL	Ribonuclease T2	RNASET2	8635	ENSG00000026297		Leukoencephalopathy, cystic, without megalencephaly, 612951 (3), Autosomal recessive	Rnaset2a,Rnaset2b (MGI:3702087,MGI:1915445)
chr6	166999316	167042417	6q27	6q27	605392	FGFR1OP, FOP	Fibroblast growth factor receptor-1 oncogene partner	FGFR1OP	11116	ENSG00000213066	fusion gene with ZNF198, CEP1, and FGFR1	Myeloproliferative disorder, 605392 (2)	Fgfr1op (MGI:1922546)
chr6	167111806	167139140	6q27	6q27	601835	CCR6, CMKBR6, CKRL3, GPR29, GPRCY4	Chemokine (C-C) receptor 6	CCR6	1235	ENSG00000112486			Ccr6 (MGI:1333797)
chr6	167156871	167157830	6q27	6q27	602043	GPR31	G protein-coupled receptor-31	GPR31	2853	ENSG00000120436			Gpr31b (MGI:1354372)
chr6	167269031	167316013	6q27	6q27	607995	UNC93A	UNC93, C. elegans, homolog of, A	UNC93A	54346	ENSG00000112494			Unc93a,Gm9992 (MGI:1933250,MGI:3712668)
chr6	167357355	167384545	6q27	6q27	187020	TCP10	T-complex 10 (a murine tcp homolog)	TCP10	6953	ENSG00000203690			
chr6	167826871	167972022	6q27	6q27	159559	AFDN, MLLT4, AF6	Afadin	AFDN	4301	ENSG00000130396			Afdn (MGI:1314653)
chr6	167999091	168045106	6q27	6q27	603815	KIF25, KNSL3	Kinesin family member 25	KIF25	3834	ENSG00000125337			
chr6	168292829	168319753	6q27	6q27	608966	DACT2, DPR2, DAPPER2	Dapper, antagonist of beta-catenin, 2	DACT2	168002	ENSG00000164488			Dact2 (MGI:1920347)
chr6	168441150	168667993	6q27	6q27	607223	SMOC2, SMAP2, DTDP1	Secreted modular calcium-binding protein 2	SMOC2	64094	ENSG00000112562		Dentin dysplasia, type I, with microdontia and misshapen teeth, 125400 (3), Autosomal recessive	Smoc2 (MGI:1929881)
chr6	169215779	169254113	6q27	6q27	188061	THBS2	Thrombospondin 2	THBS2	7058	ENSG00000186340		{Lumbar disc herniation, susceptibility to}, 603932 (3)	Thbs2 (MGI:98738)
chr6	169702111	169706357	6q27	6q27	616987	C6orf120	Chromosome 6 open reading frame 120	C6orf120	387263	ENSG00000185127			1600012H06Rik (MGI:1915162)
chr6	169703904	169724009	6q26	6q27	613069	PHF10, BAF45A	PHD finger protein 10	PHF10	55274	ENSG00000130024			Phf10 (MGI:1919307)
chr6	169725487	169751582	6q27	6q27	186977	TCTE3	T-complex-associated-testis-expressed-3	TCTE3	6991	ENSG00000184786			Gm3448,Gm3417,Tcte3 (MGI:3809205,MGI:98642,MGI:3781595)
chr6	169751621	169781583	6q27	6q27	615532	ERMARD, C6orf70, PVNH6	Endoplasmic reticulum membrane-associated RNA degradation protein	ERMARD	55780	ENSG00000130023		?Periventricular nodular heterotopia 6, 615544 (3), Autosomal dominant	Ermard (MGI:1917317)
chr6	170290702	170407747	6q26-q27	6q27	612266	FAM120B, PGCC1, CCPG, KIAA1838	Family with sequence similarity 120, member B	FAM120B	84498	ENSG00000112584			Fam120b (MGI:1914794)
chr6	170535115	170553328	6q27	6q27	602017	PSMB1	Proteasome subunit, beta type, 1	PSMB1	5689	ENSG00000008018	incorrectly assigned to 7p		Psmb1 (MGI:104884)
chr6	170554332	170572869	6q27	6q27	600075	TBP, SCA17, HDL4	TATA box binding protein	TBP	6908	ENSG00000112592		{Parkinson disease, susceptibility to}, 168600 (3), Isolated cases, Multifactorial; Spinocerebellar ataxia 17, 607136 (3), Autosomal dominant	Tbp (MGI:101838)
chr6	170575571	170584691	6q27	6q27	600866	PDCD2	Programmed cell death 2	PDCD2	5134	ENSG00000071994			Pdcd2 (MGI:104643)
chr6	0	170805979	Chr.6		109180	BEVI	Baboon M7 virus replication		628				
chr6	0	170805979	Chr.6		137010	FEA	F9 embryonic antigen		7959				
chr6	0	170805979	Chr.6		153435	LAKLG, LAKL	Lymphokine-activated killer cell ligand	LAKLG	3905				
chr6	0	170805979	Chr.6		158050	MRBC	Monkey RBC receptor		7960				
chr6	0	170805979	Chr.6		187330	TS546	Temperature sensitivity complementation, cell cycle specific, ts546 cells		7963				
chr7	0	43300000	7p22-p14		614021	CPVT3	Ventricular tachycardia, catecholaminergic polymorphic, 3				between D7S526 and D7S481	Ventricular tachycardia, catecholaminergic polymorphic, 3, 614021 (2), Autosomal recessive	
chr7	0	7200000	7p22		605626	ERVK-6	Endogenous retroviral group K, member 6	ERVK-6	64006				
chr7	0	7200000	7p22		605635	FHII	Hyperaldosteronism, familial, type II		79179			Hyperaldosteronism, familial, type II, 605635 (2)	
chr7	0	13700000	7p22.3-p21.3		614238	HYPT10	Hypotrichosis 10		100736251		between D7S1532 and D7S3047	Hypotrichosis 10, 614238 (2), Autosomal recessive	
chr7	192938	260773	7p22	7p22.3	611061	FAM20C, DMP4	Family with sequence similarity 20, member C	FAM20C	56975	ENSG00000177706		Raine syndrome, 259775 (3), Autosomal recessive	Fam20c (MGI:2136853)
chr7	497244	520667	7p22	7p22.3	173430	PDGFA	Platelet-derived growth factor, alpha polypeptide	PDGFA	5154	ENSG00000197461			Pdgfa (MGI:97527)
chr7	549184	727675	7pter-p22	7p22.3	176911	PRKAR1B	Protein kinase, cAMP-dependent, regulatory, type I, beta	PRKAR1B	5575	ENSG00000188191			Prkar1b (MGI:97759)
chr7	726691	786478	7p22.3	7p22.3	614864	DNAAF5, HEATR2, CILD18	Dynein axonemal assembly factor 5	DNAAF5	54919	ENSG00000164818		Ciliary dyskinesia, primary, 18, 614874 (3), Autosomal recessive	Dnaaf5 (MGI:3616079)
chr7	815556	874919	7p22.3	7p22.3	607723	UNC84A, KIAA0810, SUN1	UNC84, C. elegans, homolog of, A	SUN1	23353	ENSG00000164828			Sun1 (MGI:1924303)
chr7	876553	896433	7p22.3	7p22.3	612056	GET4, C7orf20, CEE	Golgi to ER traffic protein 4, S. cerevisiae, homolog of	GET4	51608	ENSG00000239857			Get4 (MGI:1914854)
chr7	897899	955406	7p22.3	7p22.3	608114	CENTA1	Centaurin, alpha-1	ADAP1	11033	ENSG00000105963			Adap1 (MGI:2442201)
chr7	964849	975598	7p22.3	7p22.3	610429	COX19	Cytochrome c oxidase assembly protein Cox19	COX19	90639	ENSG00000240230			Cox19 (MGI:1915283)
chr7	983154	989639	7p22.3	7p22.3	615967	CYP2W1	Cytochrome P450, family 2, subfamily W, polypeptide 1	CYP2W1	54905	ENSG00000073067			Cyp2w1 (MGI:3616076)
chr7	1022932	1023025	7p22.3	7p22.3	615977	MIR339	Micro RNA 339	MIR339	442907				
chr7	1086806	1093814	7p22	7p22.3	601805	GPER, CMKRL2, GPR30	G protein-coupled estrogen receptor 1	GPER1	2852	ENSG00000164850			Gper1 (MGI:1924104)
chr7	1148849	1160218	7p22.3	7p22.3	610699	ZFAND2A, AIRAP	Zinc finger AN1 domain-containing protein 2A	ZFAND2A	90637	ENSG00000178381			Zfand2a (MGI:2140729)
chr7	1470276	1504381	7p22.3	7p22.3	611345	INTS1, INT1, KIAA1440	Integrator complex subunit 1	INTS1	26173	ENSG00000164880			Ints1 (MGI:1915760)
chr7	1530731	1543042	7p22	7p22.3	600197	MAFK, NFE2U	V-maf avian musculoaponeurotic fibrosarcoma oncogene family, protein K (nuclear factor erythroid 2, ubiquitous subunit)	MAFK	7975	ENSG00000198517			Mafk (MGI:99951)
chr7	1567331	1570489	7p22.3	7p22.3	617528	PSMG3, PAC3	Proteasome assembly chaperone 3	PSMG3	84262	ENSG00000157778			Psmg3 (MGI:1913756)
chr7	1666074	1747953	7p22.3	7p22.3	614964	ELFN1, PPP1R28	Extracellular leucine-rich repeat and fibronectin type III domain-containing protein 1	ELFN1	392617	ENSG00000225968			Elfn1 (MGI:2442479)
chr7	1815791	2232970	7p22	7p22.3	602686	MAD1L1, TXBP181	Mitotic arrest-deficient 1, yeast, homolog-like 1	MAD1L1	8379	ENSG00000002822		Lymphoma, somatic (3); Prostate cancer, somatic, 176807 (3)	Mad1l1 (MGI:1341857)
chr7	2234290	2242197	7p22	7p22.3	606906	FTSJ2, FJH1	FTSJ, E. coli, homolog of, 2	MRM2	29960	ENSG00000122687			Mrm2 (MGI:1915267)
chr7	2242221	2251144	7p22	7p22.3	600312	NUDT1, MTH1	Nudix-type motif 1	NUDT1	4521	ENSG00000106268			Nudt1 (MGI:109280)
chr7	2251769	2354476	7p22.3	7p22.3	614905	SNX8	Sorting nexin 8	SNX8	29886	ENSG00000106266			Snx8 (MGI:2443816)
chr7	2354539	2380744	7p22.2	7p22.3	603917	EIF3B, EIF3S9, PRT1	Eukaryotic translation initiation factor 3, subunit B	EIF3B	8662	ENSG00000106263			Eif3b (MGI:106478)
chr7	2403488	2448483	7p22	7p22.3	610129	CHST12, C4ST2	Carbohydrate sulfotransferase 12	CHST12	55501	ENSG00000136213			Chst12 (MGI:1929064)
chr7	2512528	2529176	7p22	7p22.3	602576	LFNG, SCDO3	Lunatic fringe	LFNG	3955	ENSG00000106003	mutation identified in 1 SDO3 family	?Spondylocostal dysostosis 3, autosomal recessive, 609813 (3)	Lfng (MGI:1095413)
chr7	2537809	2555757	7p22.3	7p22.3	614506	BRAT1, BAAT1, C7orf27, RMFSL	BRCA1-associated ATM activator 1	BRAT1	221927	ENSG00000106009		Rigidity and multifocal seizure syndrome, lethal neonatal, 614498 (3), Autosomal recessive	Brat1 (MGI:1891679)
chr7	2558971	2614733	7p22.3	7p22.3	617631	IQCE, KIAA1023, PAPA7	IQ domain-containing protein E	IQCE	23288	ENSG00000106012	mutation identified in 1 PAPA7 family	?Polydactyly, postaxial, type A7, 617642 (3), Autosomal recessive	Iqce (MGI:1921489)
chr7	2679521	2765186	7p22.3	7p22.3	615168	AMZ1, KIAA1950	Archaelysin family metallopeptidase 1	AMZ1	155185	ENSG00000174945			Amz1 (MGI:2442258)
chr7	2728104	2870655	7p22.2	7p22.3-p22.2	604394	GNA12	Guanine nucleotide-binding protein, alpha-12	GNA12	2768	ENSG00000146535			Gna12 (MGI:95767)
chr7	2906074	3043944	7p22	7p22.2	607210	CARD11, CARMA1, BIMP3, PPBL, BENTA, IMD11A	Caspase recruitment domain-containing protein 11	CARD11	84433	ENSG00000198286		B-cell expansion with NFKB and T-cell anergy, 616452 (3), Autosomal dominant; Immunodeficiency 11A, 615206 (3), Autosomal recessive; Immunodeficiency 11B with atopic dermatitis, 617638 (3), Autosomal dominant	Card11 (MGI:1916978)
chr7	3301447	4268999	7p22.2	7p22.2	607216	SDK1	Sidekick, Drosophila, homolog of, 1	SDK1	221935	ENSG00000146555			Sdk1 (MGI:2444413)
chr7	4500000	7200000	7p22.1		185100	STBMS1	Strabismus, susceptibility to, 1		100188805		max lod at marker 1911/1912	{Strabismus, susceptibility to, 1}, 185100 (2)	
chr7	4642283	4771442	7p22.1	7p22.1	616302	FOXK1, MNF	Forkhead box K1	FOXK1	221937	ENSG00000164916			Foxk1 (MGI:1347488)
chr7	4775616	4794394	7p22.1	7p22.1	613653	AP5Z1, KIAA0415, SPG48	Adaptor-related protein complex 5, zeta-1 subunit	AP5Z1	9907	ENSG00000242802		Spastic paraplegia 48, autosomal recessive, 613647 (3), Autosomal recessive	Ap5z1 (MGI:1924908)
chr7	4799108	4883703	7p22.1	7p22.1	611491	RADIL, KIAA1849	RAP GTPase interactor	RADIL	55698	ENSG00000157927			Radil (MGI:2443088)
chr7	4857737	4861993	7p22.1	7p22.1	607436	PAPOLB, TPAP	Poly(A) polymerase, beta	PAPOLB	56903	ENSG00000218823			Papolb (MGI:1932115)
chr7	4892244	4959212	7p22.1	7p22.1	614581	MMD2, PAQR10	Monocyte-to-macrophage differentiation-associated protein 2	MMD2	221938	ENSG00000136297			Mmd2 (MGI:1922354)
chr7	5045820	5069487	7p22.1	7p22.1	608191	RBAK	RB-associated KRAB repressor	RBAK	57786	ENSG00000146587			Rbak (MGI:1927369)
chr7	5190203	5233854	7p22.2	7p22.1	609225	WIPI2	WD40 repeat protein interacting with phosphoinositides 2	WIPI2	26100	ENSG00000157954			Wipi2 (MGI:1923831)
chr7	5274310	5304072	7p22.1	7p22.1	609149	SLC29A4, PMAT, ENT4	Solute carrier family 29 (monoamine transporter), member 4	SLC29A4	222962	ENSG00000164638			Slc29a4 (MGI:2385330)
chr7	5454447	5513797	7p22.1	7p22.1	609084	FBXL18, FBL18	F-box and leucine-rich repeat protein 18	FBXL18	80028	ENSG00000155034			Fbxl18 (MGI:2444450)
chr7	5527145	5530708	7p22-p12	7p22.1	102630	ACTB, BRWS1	Actin, beta	ACTB	60	ENSG00000075624	~20 pseudogenes also; mutation identified in twin DJO patients	Baraitser-Winter syndrome 1, 243310 (3), Autosomal dominant; ?Dystonia, juvenile-onset, 607371 (3), Autosomal dominant	Actb (MGI:87904)
chr7	5592804	5606655	7p22	7p22.1	602689	FSCN1, SNL	Fascin homolog 1, actin-bundling protein (singed, Drosophila, homolog-like)	FSCN1	6624	ENSG00000075618			Fscn1 (MGI:1352745)
chr7	5620040	5781729	7p22	7p22.1	609948	RNF216, TRIAD3, ZIN, CAHH	RING finger protein 216	RNF216	54476	ENSG00000011275		Cerebellar ataxia and hypogonadotropic hypogonadism, 212840 (3), Autosomal recessive	Rnf216 (MGI:1344349)
chr7	5859788	5886362	7p13-p11	7p22.1	164795	OCM	Oncomodulin	OCM	654231	ENSG00000122543			Ocm (MGI:97401)
chr7	5970924	6009105	7p22	7p22.1	600259	PMS2, PMSL2, HNPCC4	Postmeiotic segregation increased, S. cerevisiae, 2, homolog of	PMS2	5395	ENSG00000122512		Colorectal cancer, hereditary nonpolyposis, type 4, 614337 (3); Mismatch repair cancer syndrome, 276300 (3), Autosomal recessive	Pms2 (MGI:104288)
chr7	6009250	6023833	7p22	7p22.1	600859	AIMP2, JTV1	Aminoacyl tRNA synthetase complex-interacting multifunctional protein 2	AIMP2	7965	ENSG00000106305			Aimp2 (MGI:2385237)
chr7	6022246	6059228	7p22.1	7p22.1	613635	EIF2AK1, HRI	Eukaryotic translation initiation factor 2-alpha kinase 1	EIF2AK1	27102	ENSG00000086232			Eif2ak1 (MGI:1353448)
chr7	6161778	6272610	7p22.1	7p22.1	605081	CYTH3, PSCD3, ARNO3, GRP1	Cytohesin 3	CYTH3	9265	ENSG00000008256			Cyth3 (MGI:1335107)
chr7	6329408	6348958	7p22.1	7p22.1	616628	FAM220A, SIPAR, ACPIN1, C7orf70	Family with sequence similarity 220, member A	FAM220A	84792	ENSG00000178397			Fam220a (MGI:1914488)
chr7	6374494	6403966	7p22.1	7p22.1	602048	RAC1, MRD48	Ras-related C3 botulinum toxin substrate 1	RAC1	5879	ENSG00000136238		Mental retardation, autosomal dominant 48, 617751 (3), Autosomal dominant	Rac1 (MGI:97845)
chr7	6409115	6448011	7p22.1	7p22.1	614016	DAGLB	Diacylglycerol lipase, beta	DAGLB	221955	ENSG00000164535			Daglb (MGI:2442032)
chr7	6688432	6706934	7p22-p21	7p22.1	194536	ZNF12	Zinc finger protein-12 (KOX3)	ZNF12	7559	ENSG00000164631			Zfp12 (MGI:99157)
chr7	7182546	7248650	7p14-p13	7p22.1-p21.3	610555	C1GALT1	Core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1	C1GALT1	56913	ENSG00000106392			C1galt1 (MGI:2151071)
chr7	7200000	16500000	7p21.3-p21.2		616986	LOC105375159	Long intergenic noncoding RNA AC011288.2						
chr7	7200000	28800000	7p21-p15		153880	MDDC	Macular dystrophy, dominant cystoid	CYMD	1541		?allelic to RP9	Macular dystrophy, dominant cystoid, 153880 (2), Autosomal dominant	
chr7	7338541	7542093	7p21.3	7p21.3	609996	COL28A1	Collagen, type XXVIII, alpha-1 polypeptide	COL28A1	340267	ENSG00000215018			Col28a1 (MGI:2685312)
chr7	7566874	7609143	7p21.3	7p21.3	615359	MIOS	Missing oocyte/meiosis regulator, Drosophila, homolog of	MIOS	54468	ENSG00000164654			Mios (MGI:2182066)
chr7	7636562	7718606	7p22	7p21.3	179837	RPA3	Replication protein A3, 14kD	RPA3	6119	ENSG00000106399			Rpa3 (MGI:1915490)
chr7	7968742	8089079	7p22	7p21.3	614283	GLCCI1, TSSN1, GCTR	Glucocorticoid-induced transcript 1	GLCCI1	113263	ENSG00000106415		{Glucocorticoid therapy, response to}, 614400 (3)	Glcci1 (MGI:2179717)
chr7	8113183	8262686	7p22	7p21.3	147625	ICA1	Islet cell autoantigen 1, 69kD	ICA1	3382	ENSG00000003147			Ica1 (MGI:96391)
chr7	8433954	8752962	7p21.3	7p21.3	604639	NXPH1, NPH1	Neurexophilin 1	NXPH1	30010	ENSG00000122584			Nxph1 (MGI:107492)
chr7	10931952	10940185	7p21.3	7p21.3	603833	NDUFA4	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 4	NDUFA4	4697	ENSG00000189043			Ndufa4 (MGI:107686)
chr7	11370434	11832197	7p21.3	7p21.3	612249	THSD7A, KIAA0960	Thrombospondin type-1 domain-containing protein 7A	THSD7A	221981	ENSG00000005108			Thsd7a (MGI:2685683)
chr7	12211221	12237263	7p21.3	7p21.3	613413	TMEM106B	Transmembrane protein 106B	TMEM106B	54664	ENSG00000106460			Tmem106b (MGI:1919150)
chr7	12570362	12653602	7p21.3	7p21.3	613416	SCIN, KIAA1905	Scinderin	SCIN	85477	ENSG00000006747			Scin (MGI:1306794)
chr7	12686826	12690933	7q	7p21.3	604786	ARL4	ADP-ribosylation factor-like 4	ARL4A	10124	ENSG00000122644			Arl4a (MGI:99437)
chr7	13700000	34900000	7p21.2-p14.3		613576	EDSS2	Ectodermal dysplasia-syndactyly syndrome 2		100505394		between D7S488 and D7S817	Ectodermal dysplasia-syndactyly syndrome 2, 613576 (2), Autosomal recessive	
chr7	13700000	16500000	7p21.2		613462	FGQTL4	Fasting plasma glucose level QTL 4		100499169		associated with rs2191349	[Fasting plasma glucose level QTL 4], 613462 (2)	
chr7	13891228	13991424	7p22	7p21.2	600541	ETV1	ETS variant gene-1	ETV1	2115	ENSG00000006468	fused with EWS in some Ewing sarcoma		Etv1 (MGI:99254)
chr7	14145048	14974776	7p21.2	7p21.2	604070	DGKB, DGK, KIAA0718	Diacylglycerol kinase, beta, 90kD	DGKB	1607	ENSG00000136267			Dgkb (MGI:2442474)
chr7	15117222	15562014	7p21.2	7p21.2	613738	AGMO, TMEM195	Alkylglycerol monooxygenase	AGMO	392636	ENSG00000187546			Agmo (MGI:2442495)
chr7	15611211	15686682	7p22.1-p21.3	7p21.2	600535	MEOX2	Mesenchyme homeo box 2	MEOX2	4223	ENSG00000106511			Meox2 (MGI:103219)
chr7	16087526	16502499	7p21.2	7p21.2-p21.1	614631	ISPD, MDDGA7, MDDGC7	Isoprenoid synthase domain-containing protein	ISPD	729920	ENSG00000214960		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 7, 614643 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 7, 616052 (3), Autosomal recessive	Ispd (MGI:1923097)
chr7	16461480	16465848	7p21.2	7p21.2	609675	SOSTDC1, ECTODIN, USAG1	Sclerostin domain-containing protein 1	SOSTDC1	25928	ENSG00000171243			Sostdc1 (MGI:1913292)
chr7	16753725	16784535	7p21.1	7p21.1	613139	TSPAN13, NET6	Tetraspanin 13	TSPAN13	27075	ENSG00000106537			Tspan13 (MGI:1913359)
chr7	16791810	16805113	7p21.3	7p21.1	606358	AGR2, AG2	Anterior gradient 2, Xenopus, homolog of	AGR2	10551	ENSG00000106541			Agr2 (MGI:1344405)
chr7	16854710	16881988	7p21.3	7p21.1	609482	AGR3, BCMP11	Anterior gradient 3, Xenopus, homolog of	AGR3	155465	ENSG00000173467			Agr3 (MGI:2685734)
chr7	17298651	17346150	7p15	7p21.1	600253	AHR	Aryl hydrocarbon receptor	AHR	196	ENSG00000106546			Ahr (MGI:105043)
chr7	17790760	17940507	7p21.1	7p21.1	606589	SNX13, KIAA0713	Sorting nexin 13	SNX13	23161	ENSG00000071189			Snx13 (MGI:2661416)
chr7	18026773	18027862	7p21.2	7p21.1	611566	PRPS1L1, PRPS3	Phosphoribosylpyrophosphate synthetase 1-like 1	PRPS1L1	221823	ENSG00000229937			Prps1l1 (MGI:1922706)
chr7	18086941	19002415	7p21-p15	7p21.1	606543	HDAC9, MITR, HDAC7B, KIAA0744	Histone deacetylase 9	HDAC9	9734	ENSG00000048052			Hdac9 (MGI:1931221)
chr7	19113046	19117671	7p21	7p21.1	601622	TWIST1, ACS3, SCS, CRS1, SWCOS	TWIST, Drosophila, homolog of, 1	TWIST1	7291	ENSG00000122691		Craniosynostosis 1, 123100 (3), Autosomal dominant; Robinow-Sorauf syndrome, 180750 (3), Autosomal dominant; Saethre-Chotzen syndrome with or without eyelid anomalies, 101400 (3), Autosomal dominant; Sweeney-Cox syndrome, 617746 (3), Autosomal dominant	Twist1 (MGI:98872)
chr7	19144781	19145420	7p21.1	7p21.1	617578	FERD3L, NTWIST, NATO3, PTFB	Fer3, Drosophila, homolog of	FERD3L	222894	ENSG00000146618			Ferd3l (MGI:2150010)
chr7	19695461	19709036	7p21	7p21.1	608312	TWISTNB	TWIST neighbor	TWISTNB	221830	ENSG00000105849	pseudogene on 6q14.3		Twistnb (MGI:106292)
chr7	20134654	20217389	7p21.1	7p21.1	612646	MACC1	Metastasis-associated gene in colon cancer 1	MACC1	346389	ENSG00000183742			Macc1 (MGI:2685113)
chr7	20615621	20757013	7p15.3	7p21.1	611785	ABCB5	ATP-binding cassette, subfamily B, member 5	ABCB5	340273	ENSG00000004846			Abcb5 (MGI:1924956)
chr7	20782273	20786888	7p21	7p21.1	608306	SP8, BTD	Transcription factor Sp8	SP8	221833	ENSG00000164651			Sp8 (MGI:2443471)
chr7	20900000	45400000	7p15-p13		613219	FGQTL2, BWQTL1	Fasting plasma glucose level QTL 2; Birth weight QTL 1		100379216		associated with rs4607517	[Birth weight QTL 1], 613219 (2); [Fasting plasma glucose level QTL 2], 613219 (2)	
chr7	20900000	28800000	7p15		164865	MYCLK1	Avian myelocytomatosis viral (v-myc) oncogene homolog like 1						
chr7	20900000	28800000	7p15		608367	MYP17, MYP4	Myopia 17	MYP17	100359401		previously assigned to 7q36 (MYP4)	Myopia 17, 608367 (2), Autosomal dominant	
chr7	20900000	28800000	7p15		612737	STQTL17	Stature quantitative trait locus 17		100301526		associated with rs1635852 and rs849140	{Stature QTL 17}, 612737 (2)	
chr7	21428033	21514821	7p15	7p15.3	600540	SP4	Sp4 transcription factor	SP4	6671	ENSG00000105866			Sp4 (MGI:107595)
chr7	21543214	21901567	7p21	7p15.3	603339	DNAH11, DNAHC11, CILD7, DNAHBL	Dynein, axonemal, heavy chain-11	DNAH11	8701	ENSG00000105877		Ciliary dyskinesia, primary, 7, with or without situs inversus, 611884 (3), Autosomal recessive	Dnah11 (MGI:1100864)
chr7	21900898	21945923	7p15	7p15.3	609685	CDCA7L, R1, JPO2	Cell division cycle-associated protein 7-like	CDCA7L	55536	ENSG00000164649			Cdca7l (MGI:2384982)
chr7	22725888	22732001	7p21	7p15.3	147620	IL6, IFNB2, BSF2, HSF, HGF	Interleukin-6 (interferon, beta-2)	IL6	3569	ENSG00000136244		{Crohn disease-associated growth failure}, 266600 (3), Multifactorial; {Diabetes, susceptibility to},, 222100 (3), Autosomal recessive; {Intracranial hemorrhage in brain cerebrovascular malformations, susceptibility to}, 108010 (3), Autosomal dominant; {Kaposi sarcoma, susceptibility to}, 148000 (3), Autosomal dominant; {Rheumatoid arthritis, systemic juvenile}, 604302 (3)	Il6 (MGI:96559)
chr7	22812631	22822851	7p15.3	7p15.3	607980	TOMM7	Translocase of outer mitochondrial membrane 7, yeast, homolog of	TOMM7	54543	ENSG00000196683			Tomm7 (MGI:1913419)
chr7	22895847	23014150	7p15.3	7p15.3	610531	FAM126A, DRCTNNB1A, HLD5	Hyccin	FAM126A	84668	ENSG00000122591		Leukodystrophy, hypomyelinating, 5, 610532 (3), Autosomal recessive	Fam126a (MGI:2149839)
chr7	23105733	23175420	7p15.3	7p15.3	611119	KLHL7, RP42, CISS3	Kelch-like 7	KLHL7	55975	ENSG00000122550		Cold-induced sweating syndrome 3, 617055 (3), Autosomal recessive; Retinitis pigmentosa 42, 612943 (3), Autosomal dominant	Klhl7 (MGI:1196453)
chr7	23246696	23275109	7p15.3	7p15.3	604368	GPNMB, PLCA3	Glycoprotein NMB	GPNMB	10457	ENSG00000136235		Amyloidosis, primary localized cutaneous, 3, 617920 (3), Autosomal recessive	Gpnmb (MGI:1934765)
chr7	23298743	23309572	7p15.3	7p15.3	614624	MALSU1, C7orf30	Mitochondrial assembly of ribosomal large subunit 1	MALSU1	115416	ENSG00000156928			Malsu1 (MGI:1922843)
chr7	23310208	23470673	7p15	7p15.3	608259	IGF2BP3, IMP3, KOC1, VICKZ3	Insulin-like growth factor 2 mRNA-binding protein 3	IGF2BP3	10643	ENSG00000136231			Igf2bp3 (MGI:1890359)
chr7	23504779	23532040	7p15.3	7p15.3	602718	TRA2A	Transformer 2, Drosophila, homolog of	TRA2A	29896	ENSG00000164548			Tra2a (MGI:1933972)
chr7	23710139	23832514	7p15.3	7p15.3	605790	STK31	Serine/threonine kinase 31	STK31	56164	ENSG00000196335			Stk31 (MGI:1924735)
chr7	24284187	24291864	7p15.1	7p15.3	162640	NPY	Neuropeptide Y	NPY	4852	ENSG00000122585			Npy (MGI:97374)
chr7	24573345	24694085	7p21-p15	7p15.3	606959	MPP6, VAM1, PALS2	Membrane protein, palmitoylated 6	MPP6	51678	ENSG00000105926			Mpp6 (MGI:1927340)
chr7	24698354	24762234	7p15	7p15.3	608798	GSDME, DFNA5	Gasdermin E	GSDME	1687	ENSG00000105928		Deafness, autosomal dominant 5, 600994 (3), Autosomal dominant	Gsdme (MGI:1889850)
chr7	24796536	24980217	7p15	7p15.3	606732	OSBPL3, ORP3, KIAA0704	Oxysterol-binding protein-like protein 3	OSBPL3	26031	ENSG00000070882			Osbpl3 (MGI:1918970)
chr7	25118650	25125360	7p15.2	7p15.3	123970	CYCS, CYC, THC4	Cytochrome C, somatic	CYCS	54205	ENSG00000172115		Thrombocytopenia 4, 612004 (3), Autosomal dominant	Cycs (MGI:88578)
chr7	25134696	25180741	7p15.3	7p15.3	616071	C7orf31	Chromosome 7 open reading frame 31	C7orf31	136895	ENSG00000153790			4921507P07Rik (MGI:1918071)
chr7	25224569	25228485	7p15.3	7p15.3	616984	NPVF, RFRP, C7orf9	Neuropeptide VF precursor	NPVF	64111	ENSG00000105954			Npvf (MGI:1926488)
chr7	25949918	25949985	7p15.2	7p15.2	613786	MIR148A, MIRN148A	Micro RNA 148A	MIR148A	406940				
chr7	26152226	26187136	7p15-p14	7p15.2	604135	NFE2L3, NRF3	Nuclear factor erythroid 2-like 3	NFE2L3	9603	ENSG00000050344			Nfe2l3 (MGI:1339958)
chr7	26189919	26200792	7p15	7p15.2	600124	HNRPA2B1, IBMPFD2	Heterogeneous nuclear ribonucleoprotein A2/B1	HNRNPA2B1	3181	ENSG00000122566	mutation identified in 1 family	?Inclusion body myopathy with early-onset Paget disease with or without frontotemporal dementia 2, 615422 (3)	Hnrnpa2b1 (MGI:104819)
chr7	26201210	26213606	7p15.2	7p15.2	604477	CBX3	Chromobox homolog 3	CBX3	11335	ENSG00000122565			Cbx3 (MGI:108515)
chr7	26291894	26374329	7p15.2	7p15.2	614780	SNX10, OPTB8	Sorting nexin 10	SNX10	29887	ENSG00000086300		Osteopetrosis, autosomal recessive 8, 615085 (3), Autosomal recessive	Snx10 (MGI:1919232)
chr7	26654771	26864742	7p15.2	7p15.2	605215	SKAP2, SCAP2, SKAP55R	src kinase associated phosphoprotein 2	SKAP2	8935	ENSG00000005020			Skap2 (MGI:1889206)
chr7	27092992	27096005	7p15.3	7p15.2	142955	HOXA1, HOX1F, BSAS	Homeo box-A1	HOXA1	3198	ENSG00000105991		Athabaskan brainstem dysgenesis syndrome, 601536 (3); Bosley-Salih-Alorainy syndrome, 601536 (3)	Hoxa1 (MGI:96170)
chr7	27100353	27102774	7p15-p14	7p15.2	604685	HOXA2, MCOHI	Homeobox A2	HOXA2	3199	ENSG00000105996		?Microtia with or without hearing impairment (AD), 612290 (3), Autosomal recessive, Autosomal dominant; ?Microtia, hearing impairment, and cleft palate (AR), 612290 (3), Autosomal recessive, Autosomal dominant	Hoxa2 (MGI:96174)
chr7	27106189	27153237	7p15-p14.2	7p15.2	142954	HOXA3, HOX1E	Homeo box-A3	HOXA3	3200	ENSG00000105997	homolog of Drosophila zen1, zen2		Hoxa3 (MGI:96175)
chr7	27121918	27128759	7p15.2	7p15.2	616068	HOXAAS2	HOXA cluster antisense RNA 2	HOXA-AS2	285943				
chr7	27128506	27130779	7p15-p14.2	7p15.2	142953	HOXA4, HOX1D	Homeo box-A4	HOXA4	3201	ENSG00000197576	homolog of Drosophila Dfd		Hoxa4 (MGI:96176)
chr7	27141051	27143667	7p15-p14.2	7p15.2	142952	HOXA5, HOX1C	Homeo box-A5	HOXA5	3202	ENSG00000106004			Hoxa5 (MGI:96177)
chr7	27145582	27147773	7p15-p14.2	7p15.2	142951	HOXA6, HOX1B	Homeo box-A6	HOXA6	3203	ENSG00000106006			Hoxa6 (MGI:96178)
chr7	27153715	27156676	7p15-p14.2	7p15.2	142950	HOXA7, HOX1A	Homeo box-A7	HOXA7	3204	ENSG00000122592	homolog of Drosophila Antp		Hoxa7 (MGI:96179)
chr7	27162437	27165529	7p15-p14.2	7p15.2	142956	HOXA9, HOX1G	Homeo box-A9	HOXA9	3205	ENSG00000078399	homolog of Drosophila Abd-B; fused to NUP98 in myeloid leukemia		Hoxa9 (MGI:96180)
chr7	27169479	27169562	7p15-p14.2	7p15.2	609688	MIR196B, MIRN196B	Micro RNA 196B	MIR196B	442920				
chr7	27170590	27180260	7p15-p14.2	7p15.2	142957	HOXA10, HOX1H	Homeo box-A10	HOXA10	3206	ENSG00000253293			Hoxa10 (MGI:96171)
chr7	27181156	27185215	7p15-p14.2	7p15.2	142958	HOXA11, HOX1I, RUSAT1	Homeo box-A11	HOXA11	3207	ENSG00000005073		Radioulnar synostosis with amegakaryocytic thrombocytopenia 1, 605432 (3), Autosomal dominant	Hoxa11 (MGI:96172)
chr7	27185407	27189292	7p15.2	7p15.2	607530	HOXA11AS	Homeo box A11, antisense	HOXA11-AS	221883				
chr7	27196879	27200105	7p15-p14.2	7p15.2	142959	HOXA13, HOX1J	Homeo box-A13	HOXA13	3209	ENSG00000106031		Guttmacher syndrome, 176305 (3), Autosomal dominant; Hand-foot-uterus syndrome, 140000 (3), Autosomal dominant	Hoxa13 (MGI:96173)
chr7	27200420	27207258	7p15.2	7p15.2	614060	HOTTIP, NCRNA00213	HOXA distal transcript antisense RNA	HOTTIP	100316868				
chr7	27242544	27247818	7p15-p14	7p15.2	142996	EVX1	Even-skipped homeo box-1 (homolog of Drosophila)	EVX1	2128	ENSG00000106038	at 5' end of HOX1 cluster		Evx1 (MGI:95461)
chr7	27525439	27663000	7p15.2	7p15.2	608475	HIBADH	3-hydroxyisobutyrate dehydrogenase	HIBADH	11112	ENSG00000106049			Hibadh (MGI:1889802)
chr7	27739372	27829766	7p15	7p15.2	605326	TAX1BP1, TXBP151	TAX1-binding protein 1	TAX1BP1	8887	ENSG00000106052			Tax1bp1 (MGI:1289308)
chr7	27830572	28180817	7p15	7p15.2-p15.1	606246	JAZF1, TIP27	JAZF1 gene	JAZF1	221895	ENSG00000153814	fused with JJAZ1		Jazf1 (MGI:2141450)
chr7	28800000	43300000	7p14		610655	HHT4	Telangiectasia, hereditary hemorrhagic, type 4		791087		between D7S2252 and D7S510	Telangiectasia, hereditary hemorrhagic, type 4, 610655 (2), Autosomal dominant	
chr7	28953357	28958412	7p14.3	7p14.3	613356	TRIL, KIAA0644	TLR4 interactor with leucine-rich repeats	TRIL	9865	ENSG00000255690			Tril (MGI:1914123)
chr7	28995230	29195450	7p15-p14	7p14.3	609780	CPVL, HVLP	Carboxypeptidase, vitellogenic-like	CPVL	54504	ENSG00000106066			Cpvl (MGI:1918537)
chr7	29146546	29514334	7p15.3	7p14.3	602857	CHN2, ARHGAP3, RHOGAP3	Chimerin 2 (GTPase-activating protein, rho, 3)	CHN2	1124	ENSG00000106069			Chn2 (MGI:1917243)
chr7	29806553	29917065	7p15.1	7p14.3	612432	WIPF3, CR16	WAS/WASL-interacting protein family, member 3	WIPF3	644150	ENSG00000122574			Wipf3 (MGI:3044681)
chr7	29920102	29990288	7p14.3-p14.1	7p14.3	614965	SCRN1, SES1, KIAA0193	Secernin 1	SCRN1	9805	ENSG00000136193			Scrn1 (MGI:1917188)
chr7	30010582	30026800	7p15.1	7p14.3	614505	FKBP14, EDSKSCL2	FK506-binding protein 14	FKBP14	55033	ENSG00000106080		Ehlers-Danlos syndrome, kyphoscoliotic type, 2, 614557 (3), Autosomal recessive	Fkbp14 (MGI:2387639)
chr7	30028360	30130482	7p21-p11.2	7p14.3	608639	FAPP2	Phosphatidylinositol 4-phosphate adaptor protein 2	PLEKHA8	84725	ENSG00000106086			Plekha8 (MGI:2681164)
chr7	30284306	30367691	7p15.1	7p14.3	612061	ZNRF2	Zinc finger and ring finger protein 2	ZNRF2	223082	ENSG00000180233			Znrf2 (MGI:1196246)
chr7	30424526	30478865	7p15-p14	7p14.3	605980	NOD1, CARD4	Nucleotide-binding oligomerization domain protein 1	NOD1	10392	ENSG00000106100			Nod1 (MGI:1341839)
chr7	30496620	30504840	7p15-p14	7p14.3	137170	GGCT, GCTG, C7orf24	Gamma-glutamylcyclotransferase	GGCT	79017	ENSG00000006625			Ggct (MGI:95700)
chr7	30594734	30634032	7p15	7p14.3	600287	GARS, SMAD1, CMT2D, HMN5	Glycyl-tRNA synthetase	GARS	2617	ENSG00000106105		Charcot-Marie-Tooth disease, type 2D, 601472 (3), Autosomal dominant; Neuropathy, distal hereditary motor, type VA, 600794 (3), Autosomal dominant	Gars (MGI:2449057)
chr7	30649405	30700102	7p21-p15	7p14.3	602034	CRHR2, CRFR2	Corticotropin releasing hormone receptor-2	CRHR2	1395	ENSG00000106113			Crhr2 (MGI:894312)
chr7	30752134	30757601	7p15.3-p15.2	7p14.3	604854	INMT	Indolethylamine N-methyltransferase	INMT	11185	ENSG00000241644			Inmt (MGI:102963)
chr7	30911693	30925516	7p14	7p14.3	107776	AQP1, CHIP28, CO	Aquaporin-1 (channel-forming integral protein, 28kD)	AQP1	358	ENSG00000240583		[Aquaporin-1 deficiency], 110450 (3); [Blood group, Colton], 110450 (3)	Aqp1 (MGI:103201)
chr7	30964020	30979530	7p15-p14	7p14.3	139191	GHRHR, GHRFR, IGHD1B	Growth hormone releasing hormone receptor	GHRHR	2692	ENSG00000106128		Growth hormone deficiency, isolated, type IB, 612781 (3)	Ghrhr (MGI:95710)
chr7	31052340	31111478	7p14	7p14.3	102981	ADCYAP1R1, PACAPR	Adenylate cyclase activating polypeptide-1 (pituitary) receptor type 1	ADCYAP1R1	117	ENSG00000078549			Adcyap1r1 (MGI:108449)
chr7	31337460	31340923	7p15-p14	7p14.3	611513	NEUROD6, ATOH2, MATH2	Neurogenic differentiation 6	NEUROD6	63974	ENSG00000164600			Neurod6 (MGI:106593)
chr7	31616776	32428223	7p14.3	7p14.3	602987	PDE1C, HCAM3	Phosphodiesterase 1C	PDE1C	5137	ENSG00000154678			Pde1c (MGI:108413)
chr7	31687016	31710157	7p15	7p14.3	604088	GSBS	G-substrate	PPP1R17	10842	ENSG00000106341		{Hypercholesterolemia, susceptibility to}, 143890 (3), Autosomal dominant	Ppp1r17 (MGI:1333876)
chr7	32485332	32495257	7p14.3	7p14.3	607285	LSM5	LSM5 protein	LSM5	23658	ENSG00000106355			Lsm5 (MGI:1913623)
chr7	32495425	32588740	7p14.3	7p14.3	612927	AVL9, KIAA0241	AVL9, S. cerevisiae, homolog of	AVL9	23080	ENSG00000105778			Avl9 (MGI:1926187)
chr7	32957403	33006930	7p12	7p14.3	616257	FKBP9, FKBP60, FKBP63	FK506-binding protein 9	FKBP9	11328	ENSG00000122642			Fkbp9 (MGI:1350921)
chr7	33014112	33062820	7p15-p14	7p14.3	606224	NT5C3A, NT5C3, UMPH1, PSN1	5' nucleotidase, cytosolic IIIA (uridine 5' monophosphate hydrolase 1)	NT5C3A	51251	ENSG00000122643	pseudogenes on chr.4 and chr.7	Anemia, hemolytic, due to UMPH1 deficiency, 266120 (3), Autosomal recessive	Nt5c3 (MGI:1927186)
chr7	33094796	33109389	7p14.2	7p14.3	607331	RP9, PAP1	RP9 gene (pim1-associated protein, mouse, homolog of)	RP9	6100	ENSG00000164610	mutation identified in 1 patient	?Retinitis pigmentosa 9, 180104 (3), Autosomal dominant	Rp9 (MGI:2157166)
chr7	33129243	33637237	7p14	7p14.3	607968	PTHB1, BBS9	Parathyroid hormone-responsive B1 gene	BBS9	27241	ENSG00000122507		Bardet-Biedl syndrome 9, 615986 (3), Autosomal recessive	Bbs9 (MGI:2442833)
chr7	33904910	34155871	7p14.3	7p14.3	608699	BMPER, CV2	BMP binding endothelial regulator	BMPER	168667	ENSG00000164619		Diaphanospondylodysostosis, 608022 (3), Autosomal recessive	Bmper (MGI:1920480)
chr7	34346511	34834330	7p15-p14	7p14.3	608596	AAA1	Asthma-associated alternatively spliced gene 1	NPSR1-AS1	404744				
chr7	34658238	34878331	7p15-p14	7p14.3	608595	NPSR1, GPR154, GPRA, VRR1, PGR14, ASRT2	Neuropeptide S receptor 1	NPSR1	387129	ENSG00000187258		{Asthma, susceptibility to, 2}, 608584 (3)	Npsr1 (MGI:2441738)
chr7	34928880	35038040	7p14.3	7p14.2	613892	DPY19L1, KIAA0877	DPY19-like 1	DPY19L1	23333	ENSG00000173852			Dpy19l1 (MGI:1915685)
chr7	35199935	35254099	7p15-p14	7p14.2	606061	TBX20, ASD4	T-box 20	TBX20	57057	ENSG00000164532		Atrial septal defect 4, 611363 (3)	Tbx20 (MGI:1888496)
chr7	35800985	35915762	7p14	7p14.2	603151	SEPT7, CDC10	Septin 7	SEPT7	989	ENSG00000122545			Sept7 (MGI:1335094)
chr7	36153226	36301542	7p14.2	7p14.2	617192	EEPD1, KIAA1706	Endonuclease/exonuclease/phosphatase family domain-containing protein 1	EEPD1	80820	ENSG00000122547			Eepd1 (MGI:1914734)
chr7	36389802	36453790	7p14.2	7p14.2	616027	ANLN, FSFS8	Actin-binding protein anillin	ANLN	54443	ENSG00000011426		Focal segmental glomerulosclerosis 8, 616032 (3), Autosomal dominant	Anln (MGI:1920174)
chr7	36509312	36724548	7p14-p12	7p14.2	102593	AOAH	Acyloxyacyl hydrolase (neutrophil)	AOAH	313	ENSG00000136250			Aoah (MGI:1350928)
chr7	36852905	37449325	7p14	7p14.2-p14.1	606420	ELMO1, CED12	Engulfment and cell motility gene 1	ELMO1	9844	ENSG00000155849			Elmo1 (MGI:2153044)
chr7	37100000	43300000	7p14.1		615455	TRGJ@	T-cell receptor gamma chain joining gene cluster						
chr7	37100000	43300000	7p14.1		615454	TRGV@	T-cell receptor gamma chain variable gene cluster						
chr7	37683559	37743834	7p14.1	7p14.1	609045	GPR141, PGR13	G protein -coupled receptor 141	GPR141	353345	ENSG00000187037			Gpr141 (MGI:2672983)
chr7	37848596	37900400	7p14.1	7p14.1	607421	NME8, TXNDC3, SPTRX2, CILD6	NME/NM23 family member 8	NME8	51314	ENSG00000086288		Ciliary dyskinesia, primary, 6, 610852 (3), Autosomal recessive	Nme8 (MGI:1920662)
chr7	37905931	37916922	7p14.1	7p14.1	606570	SFRP4, FRPHE, PYL	Secreted frizzled-related protein 4	SFRP4	6424	ENSG00000106483		Pyle disease, 265900 (3), Autosomal recessive	Sfrp4 (MGI:892010)
chr7	38178205	38230670	7p14-p13	7p14.1	611759	STARD3NL, MENTHO	STARD3 N-terminal like	STARD3NL	83930	ENSG00000010270			Stard3nl (MGI:1923455)
chr7	38239576	38276740	7p15-p14	7p14.1	609642	TARP	T-cell antigen receptor, gamma subunit, alternate reading frame protein		445347	ENSG00000211689			
chr7	38240023	38249571	7p14.1	7p14.1	615450	TRGC2	T-cell receptor gamma chain constant region 2	TRGC2	6967				
chr7	38260087	38265677	7p14.1	7p14.1	186970	TRGC1	T-cell receptor gamma chain constant region 1	TRGC1	6966				
chr7	38383693	38631566	7p14-p13	7p14.1	600418	AMPH	Amphiphysin	AMPH	273	ENSG00000078053			Amph (MGI:103574)
chr7	38722974	38909199	7p14.1	7p14.1	605485	VPS41	Vacuolar protein sorting 41, Yeast, homolog of	VPS41	27072	ENSG00000006715			Vps41 (MGI:1929215)
chr7	38977877	39468600	7p14-p13	7p14.1	609062	POU6F2, WTSL, WT5	POU domain, class 6, transcription factor 2	POU6F2	11281	ENSG00000106536		{Wilms tumor susceptibility-5}, 601583 (3), Autosomal dominant, Somatic mutation	
chr7	39622954	39708123	7p22-p15	7p14.1	179550	RALA	RAS-like protein A (Simian leukemia viral (v-ral) oncogene homolog A, ras-related)	RALA	5898	ENSG00000006451			Rala (MGI:1927243)
chr7	39949663	40097133	7p14.1	7p14.1	603309	CDK13, CDC2L5, CHED, CHDFIDD	Cyclin-dependent kinase 13	CDK13	8621	ENSG00000065883		Congenital heart defects, dysmorphic facial features, and intellectual developmental disorder, 617360 (3), Autosomal dominant	Cdk13 (MGI:1916812)
chr7	40132742	40134651	7p14	7p14.1	609188	MPLKIP, C7orf11, ABHS, TTDN1, TTD4	M-phase specific PLK1 interacting protein	MPLKIP	136647	ENSG00000168303		Trichothiodystrophy 4, nonphotosensitive, 234050 (3), Autosomal recessive	Mplkip (MGI:1913558)
chr7	40134886	40860766	7p14	7p14.1	609187	C7orf10, GA3	Chromosome 7 open reading frame 10	SUGCT	79783	ENSG00000175600		Glutaric aciduria III, 231690 (3), Autosomal recessive	Sugct (MGI:1923221)
chr7	41685100	41710531	7p15-p13	7p14.1	147290	INHBA	Inhibin, beta-1	INHBA	3624	ENSG00000122641			Inhba (MGI:96570)
chr7	41960948	42237018	7p13	7p14.1	165240	GLI3, PAPA, PAPB	GLI-Kruppel family member GLI3 (oncogene GLI3)	GLI3	2737	ENSG00000106571	amplified in glioblastoma	Greig cephalopolysyndactyly syndrome, 175700 (3), Autosomal dominant; {Hypothalamic hamartomas, somatic}, 241800 (3); Pallister-Hall syndrome, 146510 (3), Autosomal dominant; Polydactyly, postaxial, types A1 and B, 174200 (3), Autosomal dominant; Polydactyly, preaxial, type IV, 174700 (3), Autosomal dominant	Gli3 (MGI:95729)
chr7	42916860	42932205	7p13	7p14.1	176842	PSMA2, PSC2, HC3	Proteasome (prosome, macropain) subunit, alpha type, 2	PSMA2	5683	ENSG00000106588	incorrectly assigned to 6q		Psma2 (MGI:104885)
chr7	42932339	42937856	7p14	7p14.1	611839	MRPL32	Mitochondrial ribosomal protein L32	MRPL32	64983	ENSG00000106591			Mrpl32 (MGI:2137226)
chr7	43112579	43566000	7p13	7p14-p13	610384	HECW1, NEDL1, KIAA0322	HECT, C2, and WW domains-containing E3 ubiquitin-protein ligase 1	HECW1	23072	ENSG00000002746			Hecw1 (MGI:2444115)
chr7	43583092	43627378	7p13	7p13	604726	STK17A, DRAK1	Serine/threonine protein kinase 17A	STK17A	9263	ENSG00000164543			
chr7	43608451	43729540	7p13	7p13	614769	COA1, C7orf44	Cytochrome c oxidase assembly factor 1, S. cerevisiae, homolog of	COA1	55744	ENSG00000106603			
chr7	43758121	43807341	7p13	7p13	109750	BLVRA	Biliverdin reductase A	BLVRA	644	ENSG00000106605		Hyperbiliverdinemia, 614156 (3), Autosomal recessive, Autosomal dominant	Blvra (MGI:88170)
chr7	43866557	43869545	7p14	7p13	611986	MRPS24	Mitochondrial ribosomal protein S24	MRPS24	64951	ENSG00000062582			Mrps24 (MGI:1928142)
chr7	43875893	43926410	7p13	7p13	610337	URGCP, URG4	Upregulator of cell proliferation	URGCP	55665	ENSG00000106608			Urgcp (MGI:1919296)
chr7	43997854	44011039	7p13	7p13	617623	SPDYE1, SPDYB2L2, RINGO1	SPEEDY/RINGO cell cycle regulator family, member E1	SPDYE1	285955	ENSG00000136206			
chr7	44044639	44061912	7p13	7p13	610106	DBNL, HIP55	Drebrin-like	DBNL	28988	ENSG00000136279			Dbnl (MGI:700006)
chr7	44062726	44065586	7p13-p12.3	7p13	612931	PGAM2, PGAMM, GSD10	Phosphoglycerate mutase, muscle form	PGAM2	5224	ENSG00000164708		Glycogen storage disease X, 261670 (3), Autosomal recessive	Pgam2 (MGI:1933118)
chr7	44072061	44082539	7p13	7p13	606344	POLM	Polymerase, DNA, mu	POLM	27434	ENSG00000122678			Polm (MGI:1860191)
chr7	44114679	44123667	7p13	7p13	600815	POLD2	Polymerase (DNA directed), delta 2, regulatory subunit, 50kD	POLD2	5425	ENSG00000106628			Pold2 (MGI:1097163)
chr7	44138863	44141391	7p13	7p13	613993	MYL7, MYL2A, MLC2A, MYLC2A	Myosin, light chain 7, regulatory	MYL7	58498	ENSG00000106631			Myl7 (MGI:107495)
chr7	44143212	44189438	7p15-p13	7p13	138079	GCK, HHF3	Glucokinase (hexokinase-4)	GCK	2645	ENSG00000106633	proximal to TCRB	Diabetes mellitus, noninsulin-dependent, late onset, 125853 (3), Autosomal dominant; Diabetes mellitus, permanent neonatal, 606176 (3), Autosomal recessive, Autosomal dominant; Hyperinsulinemic hypoglycemia, familial, 3, 602485 (3), Autosomal dominant; MODY, type II, 125851 (3), Autosomal dominant	Gck (MGI:1270854)
chr7	44217149	44326166	7p14	7p13	607707	CAMK2B, MRD54	Calcium/calmodulin-dependent protein kinase II-beta	CAMK2B	816	ENSG00000058404		Mental retardation, autosomal dominant 54, 617799 (3), Autosomal dominant	Camk2b (MGI:88257)
chr7	44382365	44490874	7p13	7p13	610296	NUDCD3, KIAA1068, NUDCL	NUDC domain-containing protein 3	NUDCD3	23386	ENSG00000015676			Nudcd3 (MGI:2144158)
chr7	44512439	44541650	7p13	7p13	608010	NPC1L1	NPC1-like 1	NPC1L1	29881	ENSG00000015520		[Ezetimibe, nonresponse to] (3)	Npc1l1 (MGI:2685089)
chr7	44565416	44574537	7p13	7p13	608023	DDX56, NOH61	DEAD/H box 56	DDX56	54606	ENSG00000136271			Ddx56 (MGI:1277172)
chr7	44577893	44582294	7p22.2	7p13	612038	TMED4	Transmembrane p24 trafficking protein 4	TMED4	222068	ENSG00000158604			Tmed4 (MGI:1915070)
chr7	44606521	44709069	7p14-p13	7p13	613022	OGDH	Oxoglutarate dehydrogenase, lipoamide (alpha-ketoglutarate dehydrogenase)	OGDH	4967	ENSG00000105953		Alpha-ketoglutarate dehydrogenase deficiency, 203740 (1), Autosomal recessive	Ogdh (MGI:1098267)
chr7	44748546	44769880	7p13	7p13	611196	ZMIZ2, KIAA1886, ZIMP7	Zinc finger MIZ-domain containing 2	ZMIZ2	83637	ENSG00000122515			Zmiz2 (MGI:106374)
chr7	44795959	44803122	7p13	7p13	123840	PPIA	Peptidylprolyl isomerase A (cyclophilin A)	PPIA	5478	ENSG00000196262			Ppia (MGI:97749)
chr7	44876292	44885384	7p13	7p13	608887	PURB	Purine-rich element-binding protein B	PURB	5814	ENSG00000146676			Purb (MGI:1338779)
chr7	44962660	44979104	7p13	7p13	600642	MYO1G, HA2, HLA-HA2	Myosin IG	MYO1G	64005	ENSG00000136286			Myo1g (MGI:1927091)
chr7	44999745	45076469	7p13	7p13	607929	C7orf22, CCM2, MGC4067	Malcavernin	CCM2	83605	ENSG00000136280		Cerebral cavernous malformations-2, 603284 (3), Autosomal dominant	Ccm2 (MGI:2384924)
chr7	45100099	45111746	7p13	7p13	611325	TBRG4, KIAA0948, CPR2	Transforming growth factor-beta regulator 4	TBRG4	9238	ENSG00000136270			Tbrg4 (MGI:1100868)
chr7	45104905	45105041	7p13	7p13	611335	SNORA5C	Small nucleolar RNA, H/ACA box, 5C	SNORA5C	677796		in intron 3 of TBRG4		
chr7	45157767	45184249	7p13-p12	7p13	605155	RAMP3	Receptor activity-modifying protein 3	RAMP3	10268	ENSG00000122679			Ramp3 (MGI:1860292)
chr7	45400000	60100000	7p12-cen		147830	TTIM1	T-cell tumor invasion and metastasis-1 (invasion-metastasis of neoplasms, chromosome 7 determined)						
chr7	45574139	45723115	7p13-p12	7p12.3	103072	ADCY1, DFNB44	Adenylate cyclase-1, brain	ADCY1	107	ENSG00000164742	mutation identified in 1 DFNB44 family	?Deafness, autosomal recessive 44, 610154 (3), Autosomal recessive	Adcy1 (MGI:99677)
chr7	45723786	45769017	7p13	7p12.3	611563	SEPT13	Septin 13	SEPT7P2	641977				
chr7	45888418	45893667	7p14-p12	7p12.3	146730	IGFBP1	Insulin-like growth factor-binding protein-1	IGFBP1	3484	ENSG00000146678			Igfbp1 (MGI:96436)
chr7	45912244	45921271	7p14-p12	7p12.3	146732	IGFBP3	Insulin-like growth factor-binding protein-3	IGFBP3	3486	ENSG00000146674	tail-to-tail 20kb from IGFBP1		Igfbp3 (MGI:96438)
chr7	47275153	47582552	7p12.3	7p12.3	606825	TNS3, TEM6	Tensin 3	TNS3	64759	ENSG00000136205			Tns3 (MGI:2443012)
chr7	47774602	47958912	7p13-p12	7p12.3	609721	PKD1L1, HTX8	Polycystin 1L1	PKD1L1	168507	ENSG00000158683		Heterotaxy, visceral, 8, autosomal, 617205 (3), Autosomal recessive	Pkd1l1 (MGI:2156538)
chr7	47962979	47979624	7p13-p12	7p12.3	603760	HUS1	Hydroxyurea-sensitive 1, S. pombe, homolog of	HUS1	3364	ENSG00000136273			Hus1 (MGI:1277962)
chr7	48088307	48108745	7p12.3	7p12.3	191730	UPP1, UP	Uridine phosphorylase 1	UPP1	7378	ENSG00000183696			Upp1 (MGI:1097668)
chr7	48171423	48647496	7p12.3	7p12.3	607807	ABCA13	ATP-binding cassette, subfamily A, member 13	ABCA13	154664	ENSG00000179869			Abca13 (MGI:2388707)
chr7	49000000	50500000	7p12.2		613067	ALL2	Leukemia, acute lymphoblastic, susceptibility to, 2		100310786		associated with rs11978267	{Leukemia, acute lymphoblastic, susceptibility to, 2}, 613067 (2)	
chr7	49773660	49923776	7p12.2	7p12.2	611108	VWC2, BRORIN	von Willebrand factor C domain-containing protein 2	VWC2	375567	ENSG00000188730			Vwc2 (MGI:2442987)
chr7	49846354	50093263	7p12.2	7p12.2	608498	ZPBP, SP38	Zona pellucida-binding protein	ZPBP	11055	ENSG00000042813			Zpbp (MGI:1855701)
chr7	50303452	50405100	7p12	7p12.2	603023	IKZF1, ZNFN1A1, IK1, LYF1, CVID13	Ikaros family zinc finger 1	IKZF1	10320	ENSG00000185811	fused with BCL6 in DLBL	Immunodeficiency, common variable, 13, 616873 (3), Autosomal dominant	Ikzf1 (MGI:1342540)
chr7	50437319	50450405	7p12.1	7p12.2	615383	FIGNL1	Fidgetin-like protein 1	FIGNL1	63979	ENSG00000132436			Fignl1 (MGI:1890648)
chr7	50458435	50565459	7p11	7p12.2-p12.1	107930	DDC	DOPA decarboxylase (aromatic L-amino acid decarboxylase)	DDC	1644	ENSG00000132437		Aromatic L-amino acid decarboxylase deficiency, 608643 (3), Autosomal recessive	Ddc (MGI:94876)
chr7	50500000	98400000	7p12.1-q21		614676	CMH21	Cardiomyopathy, familial hypertrophic, 21		100909387		max lod at D7S669	Cardiomyopathy, hypertrophic, 21, 614676 (2), Autosomal dominant	
chr7	50590062	50793461	7p12-p11.2	7p12.1	601523	GRB10, RSS	Growth factor receptor-bound protein-10	GRB10	2887	ENSG00000106070			Grb10 (MGI:103232)
chr7	51016211	51316860	7p12	7p12.1	610317	COBL, KIAA0633	Cordon-bleu, mouse, homolog of	COBL	23242	ENSG00000106078			Cobl (MGI:105056)
chr7	53900000	98400000	7p11-q21		608658	HPC4	Prostate cancer, hereditary, 4		408260			{Prostate cancer, susceptibility to, 4}, 176807 (2), Autosomal dominant	
chr7	53900000	58100000	7p11.2		608345	NYS3	Nystagmus 3, congenital, autosomal dominant	NYS3	4934		translocation t(7;15)(p11.2;q11.2)	Nystagmus 3, congenital, autosomal dominant, 608345 (2), Autosomal dominant	
chr7	53900000	58100000	7p11.2		180860	SRS, RSS	Silver-Russell syndrome				maternal uniparental disomy of chromosome 7	Silver-Russell syndrome, 180860 (4), Isolated cases	
chr7	54201223	54202420	7p14-p13	7p11.2	600762	HPVC1, PE5L	Human papillomavirus E5 central sequence-like 1	HPVC1	3262				
chr7	54752246	54759245	7p11.2	7p11.2	609215	SEC61G	Sec61 complex, gamma subunit	SEC61G	23480	ENSG00000132432			Gm16261,Sec61g,Gm11575,Gm12881,Gm4184 (MGI:3782360,MGI:3649592,MGI:3651892,MGI:3826544,MGI:1202066)
chr7	55019020	55208079	7p12.3-p12.1	7p11.2	131550	EGFR, NISBD2	Epidermal growth factor receptor	EGFR	1956	ENSG00000146648	same as oncogene ERBB; mutation identified in 1 NISBD2 family	Adenocarcinoma of lung, response to tyrosine kinase inhibitor in, 211980 (3), Autosomal recessive; ?Inflammatory skin and bowel disease, neonatal, 2, 616069 (3), Autosomal recessive; Nonsmall cell lung cancer, response to tyrosine kinase inhibitor in, 211980 (3), Autosomal recessive; {Nonsmall cell lung cancer, susceptibility to}, 211980 (3), Autosomal recessive	Egfr (MGI:95294)
chr7	55365447	55433741	7p11.2	7p11.2	612919	LANCL2, TASP	LanC-like 2	LANCL2	55915	ENSG00000132434			Lancl2 (MGI:1919085)
chr7	55434405	55572519	7p11.2	7p11.2	611915	VOPP1, ECOP, GASP	Vesicular, overexpressed in cancer, prosurvival protein 1	VOPP1	81552	ENSG00000154978			Vopp1 (MGI:2141658)
chr7	55764796	55773695	7q11.2	7p11.2	604239	PSPHP1, PSPHL, CO9	Phosphoserine phosphatase-like (pseudogene)	PSPHP1	8781				
chr7	55793543	55862788	7p11.2	7p11.2	612140	SEPT14	Septin 14	SEPT14	346288	ENSG00000154997			Sept14 (MGI:1921472)
chr7	55887276	55942224	7p11.2	7p11.2	616181	ZNF713	Zinc finger protein 713	ZNF713	349075	ENSG00000178665			
chr7	55951917	55955340	7p11-q11.21	7p11.2	611980	MRPS17	Mitochondrial ribosomal protein S17	MRPS17	51373	ENSG00000239789	9 pseudogenes		Mrps17 (MGI:1913508)
chr7	55964576	56000181	7p12	7p11.2	603004	GBAS, NIPSNAP2	Glioblastoma amplified sequence	NIPSNAP2	2631	ENSG00000146729			Nipsnap2 (MGI:1278343)
chr7	56010486	56051603	7p11.2	7p11.2	172480	PSPH, PSP, PSPHD	Phosphoserine phosphatase	PSPH	5723	ENSG00000146733		Phosphoserine phosphatase deficiency, 614023 (3), Autosomal recessive	Psph (MGI:97788)
chr7	56051684	56063988	7p11.2	7p11.2	104613	CCT6A, CCT6, HTR3, TCP20	Chaperonin containing T-complex polypeptide 1, subunit 6A	CCT6A	908	ENSG00000146731			Cct6a (MGI:107943)
chr7	56064006	56080671	7p11.2	7p11.2	607940	SUMF2	Sulfatase-modifying factor 2	SUMF2	25870	ENSG00000129103			Sumf2 (MGI:1915152)
chr7	56079926	56093449	7p12-q21	7p11.2	172470	PHKG1	Phosphorylase kinase, gamma 1, muscle	PHKG1	5260	ENSG00000164776	presumed pseudogene on 11		Phkg1 (MGI:97579)
chr7	56101561	56106629	7p11.2	7p11.2	616244	CHCHD2, PARK22	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2	CHCHD2	51142	ENSG00000106153		Parkinson disease 22, autosomal dominant, 616710 (3), Autosomal dominant	Chchd2,Chchd2-ps (MGI:1261428,MGI:3649942)
chr7	57119573	57139898	7p11.2	7p11.2	617444	ZNF479, KR19	Zinc finger protein 479	ZNF479	90827	ENSG00000185177			
chr7	60100000	159345973	7q		145290	HRX	Hyperreflexia		7974		linked to KEL		
chr7	60100000	159345973	7q		252270	MLSM7, DEL7q, C7DELq	Monosomy 7 of bone marrow					Myelodysplasia and leukemia syndrome with monosomy 7, 252270 (4), Autosomal recessive	
chr7	62100000	77900000	7q11.2		105800	ANIB1	Aneurysm, intracranial berry, 1	ANIB1	116833		in or near ELN	Aneurysm, intracranial berry, 1, 105800 (2), Autosomal dominant	
chr7	62100000	98400000	7q11.2-q21.3		129900	EEC1	Ectrodactyly, ectodermal dysplasia, cleft lip/palate, 1	EEC1	1913			?EEC syndrome-1, 129900 (2), Autosomal dominant	
chr7	62100000	77900000	7q11.2		610247	EOE1, EE	Esophagitis, eosinophilic, 1		100302511		associated with rs2302009	{Esophagitis, eosinophilic, 1}, 610247 (2), Multifactorial	
chr7	64665009	64711581	7q11.2	7q11.21	603989	ZNF107	Zinc finger protein-107	ZNF107	51427	ENSG00000196247			
chr7	64794387	64853799	7q11.21-q11.23	7q11.21	604080	ZNF138	Zinc finger protein-138	ZNF138	7697	ENSG00000197008			
chr7	64882492	64932238	7q11.21	7q11.21	604756	ZNF273, HZF9	Zinc finger protein 273	ZNF273	10793	ENSG00000198039			
chr7	64974451	64991035	7q11.2	7q11.21	194624	ZNF117	Zinc finger protein-117	ZNF117	51351	ENSG00000152926			
chr7	64990354	65006745	7q11.2	7q11.21	131170	ERV3	Endogenous retroviral sequence-3 (includes zinc finger protein H-plk)	ERV3-1	2086	ENSG00000213462			
chr7	65373798	65401134	7q11.21	7q11.21	603974	ZNF92	Zinc finger protein-92	ZNF92	168374	ENSG00000146757	sequence aligns with sequence on 19p13.1-p12		
chr7	65865771	65959562	7q11.21	7q11.21	608838	VKORC1L1	Vitamin K epoxide reductase complex, subunit 1-like 1	VKORC1L1	154807	ENSG00000196715			Vkorc1l1 (MGI:1916818)
chr7	65960683	65982313	7q21.11	7q11.21	611499	GUSB, MPS7	Glucuronidase, beta-	GUSB	2990	ENSG00000169919		Mucopolysaccharidosis VII, 253220 (3), Autosomal recessive	Gusb (MGI:95872)
chr7	66075788	66093342	7cen-q11.2	7q11.21	608310	ASL	Argininosuccinate lyase	ASL	435	ENSG00000126522		Argininosuccinic aciduria, 207900 (3), Autosomal recessive	Asl (MGI:88084)
chr7	66114817	66154567	7q21.3-q22	7q11.21	606121	RCP	Calcitonin gene-related peptide receptor component protein	CRCP	27297	ENSG00000241258			Crcp (MGI:1100818)
chr7	66205271	66360450	7q11.21	7q11.21	603125	TPST1	Tyrosylprotein sulfotransferase 1	TPST1	8460	ENSG00000169902			Tpst1 (MGI:1298231)
chr7	66628880	66643228	7q11.21	7q11.21	611725	KCTD7, EPM3, CLN14	Potassium channel tetramerization domain containing 7	KCTD7	154881	ENSG00000243335		Epilepsy, progressive myoclonic 3, with or without intracellular inclusions, 611726 (3), Autosomal recessive	Kctd7 (MGI:2442265)
chr7	66682090	66811463	7q11.21	7q11.21	609700	RABGEF1, RABEX5	RAB guanine nucleotide exchange factor 1	RABGEF1	27342	ENSG00000154710			Rabgef1 (MGI:1929459)
chr7	66987676	66995695	7q11	7q11.21	607444	SBDS, SDS	SBDS gene	SBDS	51119	ENSG00000126524		{Aplastic anemia, susceptibility to}, 609135 (3); Shwachman-Diamond syndrome, 260400 (3), Autosomal recessive	Sbds (MGI:1913961)
chr7	66996804	67239519	7q11.21	7q11.21	611243	TYW1	tRNA-wybutosine-synthesizing protein 1, S. cerevisiae, homolog of	TYW1	55253	ENSG00000198874			Tyw1 (MGI:2141161)
chr7	69598474	70793067	7q11.2	7q11.22	607270	KIAA0442, MRD26	KIAA0442 gene	AUTS2	26053	ENSG00000158321	translocation break at 7q11.2	Mental retardation, autosomal dominant 26, 615834 (3), Autosomal dominant	Auts2 (MGI:1919847)
chr7	71132404	71713600	7q11.22	7q11.22	615137	WBSCR17, GALNTL3, GALNACT17	Williams-Beuren syndrome chromosome region 17	GALNT17	64409	ENSG00000185274			Galnt17 (MGI:2137594)
chr7	72700000	77900000	7q11.23		613729	DEL7q11.23, C7DELq11.23	Chromosome 7q11.23 deletion syndrome, distal, 1.2Mb				contiguous gene deletion syndrome	Chromosome 7q11.23 deletion syndrome, distal, 1.2Mb, 613729 (4)	
chr7	72700000	77900000	7q11.23		609757	DUP7q11.23, C7DUPq11.23	Chromosome 7q11.23 duplication syndrome					Chromosome 7q11.23 duplication syndrome, 609757 (4), Autosomal dominant	
chr7	72700000	77900000	7q11.23		194050	WBS, WMS, WS, DEL7q11, C7DELq11	Williams-Beuren syndrome (chromosome 7q11.23 deletion syndrome)				contiguous gene syndrome	Williams-Beuren syndrome, 194050 (4), Autosomal dominant	
chr7	72879334	72951439	7q11.23	7q11.23	615753	POM121, POM121A, KIAA0618	POM121 transmembrane nucleoporin	POM121	9883	ENSG00000196313			Pom121 (MGI:2137624)
chr7	72954844	73005931	7q11.23	7q11.23	612550	TRIM74, TRIM50C	Tripartite motif-containing protein 74	TRIM74	378108	ENSG00000155428			
chr7	73302515	73308866	7q11.23	7q11.23	615732	NSUN5, WBSCR20, WBSCR20A	NOP2/SUN RNA methyltransferase family, member 5	NSUN5	55695	ENSG00000130305			Nsun5 (MGI:2140844)
chr7	73312535	73328081	7q11.23	7q11.23	612548	TRIM50, TRIM50A	Tripartite motif-containing protein 50	TRIM50	135892	ENSG00000146755			Trim50 (MGI:2664992)
chr7	73328151	73358636	7q11.23	7q11.23	604839	FKBP6	FK506-binding protein 6	FKBP6	8468	ENSG00000077800			Fkbp6 (MGI:2137612)
chr7	73433778	73436119	7q11.23	7q11.23	601766	FZD9, FZD3	Frizzled, Drosophila, homolog of, 9	FZD9	8326	ENSG00000188763			Fzd9 (MGI:1313278)
chr7	73440397	73522284	7q11-q21	7q11.23	605681	BAZ1B, WSTF, WBSCR9	Bromodomain adjacent to zinc finger domain, 1B	BAZ1B	9031	ENSG00000009954			Baz1b (MGI:1353499)
chr7	73536352	73557734	7q11.23	7q11.23	605846	BCL7B	B-cell CLL/lymphoma 7B	BCL7B	9275	ENSG00000106635			Bcl7b (MGI:1332238)
chr7	73568943	73578682	7q11.23	7q11.23	605842	TBL2	Transducin-beta-like 2	TBL2	26608	ENSG00000106638			Tbl2 (MGI:1351652)
chr7	73593193	73624542	7q11.23	7q11.23	605678	MLXIPL, WBSCR14, MONDOB, CHREBP	MLX interacting protein-like	MLXIPL	51085	ENSG00000009950			Mlxipl (MGI:1927999)
chr7	73665345	73672109	7q11.23	7q11.23	610039	VPS37D, WBSCR24	Vacuolar protein sorting 37, yeast, homolog of, D	VPS37D	155382	ENSG00000176428			Vps37d (MGI:2159402)
chr7	73683567	73698220	7q11.23	7q11.23	615733	BUD23, WBSCR22, MERM1	rRNA methyltransferase and ribosome maturation factor Bud23	BUD23	114049	ENSG00000071462			Bud23 (MGI:1913388)
chr7	73699204	73719686	7q11.2	7q11.23	186590	STX1A, STX1	Syntaxin 1A, brain	STX1A	6804	ENSG00000106089			Stx1a (MGI:109355)
chr7	73735068	73735999	7q11.23	7q11.23	612545	WBSCR26	Williams-Beuren syndrome chromosome region 26	ABHD11-AS1	171022				
chr7	73768996	73770269	7q11	7q11.23	602910	CLDN3, CPETR2	Claudin-3 (Clostridium perfringens enterotoxin receptor 2)	CLDN3	1365	ENSG00000165215			Cldn3 (MGI:1329044)
chr7	73830862	73832692	7q11.23	7q11.23	602909	CLDN4, CPETR1, CPER	Claudin 4	CLDN4	1364	ENSG00000189143			Cldn4 (MGI:1313314)
chr7	73834589	73842526	7q11.23	7q11.23	612546	WBSCR27	Williams-Beuren syndrome chromosome region 27	METTL27	155368	ENSG00000165171			Mettl27 (MGI:1933146)
chr7	73860847	73865892	7q11.23	7q11.23	612547	WBSCR28	Williams-Beuren syndrome chromosome region 28	TMEM270	135886	ENSG00000175877			Tmem270 (MGI:1923879)
chr7	74027771	74069906	7q11.2	7q11.23	130160	ELN, SVAS, ADCL1	Elastin	ELN	2006	ENSG00000049540		Cutis laxa, autosomal dominant, 123700 (3), Autosomal dominant; Supravalvar aortic stenosis, 185500 (3), Autosomal dominant	
chr7	74083776	74122524	7q11.23	7q11.23	601329	LIMK1	LIM domain kinase 1	LIMK1	3984	ENSG00000106683			Limk1 (MGI:104572)
chr7	74174375	74197100	7q11.23	7q11.23	603431	EIF4H, WBSCR1, WSCR1	Eukaryotic translation initiation factor 4H	EIF4H	7458	ENSG00000106682			Eif4h (MGI:1341822)
chr7	74191197	74191293	7q11.23	7q11.23	615070	MIR590	Micro RNA 590	MIR590	693175				
chr7	74209756	74229833	7q11.23	7q11.23	605719	LAT2, WBSCR5, LAB, NTAL	Linker for activation of T cells family, member 2	LAT2	7462	ENSG00000086730			Lat2 (MGI:1926479)
chr7	74231501	74254457	7q11.23	7q11.23	600404	RFC2	Replication factor C2, 40kD (activator 1, 40kD)	RFC2	5982	ENSG00000049541			Rfc2 (MGI:1341868)
chr7	74289436	74405942	7q11.23	7q11.23	603432	CLIP2, CYLN2, WBSCR4, WSCR4	CAP-GLY domain-containing linker protein 2	CLIP2	7461	ENSG00000106665	?neurodevelopmental defect of Williams syndrome		Clip2 (MGI:1313136)
chr7	74453789	74603069	7q11.23	7q11.23	604318	GTF2IRD1, GTF3, MUSTRD1, WBS	GTF21 repeat domain-containing protein 1	GTF2IRD1	9569	ENSG00000006704			Gtf2ird1 (MGI:1861942)
chr7	74657664	74760691	7q11.23	7q11.23	601679	GTF2I, BAP135, WBS	General transcription factor II-I (BTK-associated protein, 135kD)	GTF2I	2969	ENSG00000263001			Gtf2i (MGI:1202722)
chr7	74773961	74789375	7q11.23	7q11.23	608512	NCF1	Neutrophil cytosolic factor-1, 47kD	NCF1	653361	ENSG00000158517		Chronic granulomatous disease due to deficiency of NCF-1, 233700 (3), Autosomal recessive	Ncf1 (MGI:97283)
chr7	74964692	75031531	7q11.23	7q11.23	617033	GATSL2, CASTOR2	GATS protein-like 2	CASTOR2	729438	ENSG00000274070			Gatsl2 (MGI:1933384)
chr7	75395628	75405612	7q11.23	7q11.23	612549	TRIM73, TRIM50B	Tripartite motif-containing protein 73	TRIM73	375593	ENSG00000178809			
chr7	75416780	75486287	7q11.23	7q11.23	615754	POM121C, POM121-2	POM121 Transmembrane nucleoporin C	POM121C	100101267	ENSG00000272391			Pom121 (MGI:2137624)
chr7	75533297	75738975	7q11.23	7q11.23	601767	HIP1	Huntingtin interacting protein-1	HIP1	3092	ENSG00000127946		{Prostate cancer, progression of}, 176807 (1), Autosomal dominant	Hip1 (MGI:1099804)
chr7	75769523	75791582	7q11.2	7q11.23	604697	CCL26, SCYA26	Chemokine, C-C motif, ligand 26	CCL26	10344	ENSG00000006606			
chr7	75810824	75823355	7q11.23	7q11.23	602495	CCL24, SCYA24, MPIF2	Chemokine, C-C motif, ligand 24	CCL24	6369	ENSG00000106178			Ccl24 (MGI:1928953)
chr7	75878991	75888925	7q11.23	7q11.23	615203	RHBDD2	Rhomboid domain-containing protein 2	RHBDD2	57414	ENSG00000005486			Rhbdd2 (MGI:1915612)
chr7	75915101	75986854	7q11.2	7q11.23	124015	POR	Cytochrome P450 oxidoreductase	POR	5447	ENSG00000127948		Antley-Bixler syndrome with genital anomalies and disordered steroidogenesis, 201750 (3), Autosomal recessive; Disordered steroidogenesis due to cytochrome P450 oxidoreductase, 613571 (3)	Por (MGI:97744)
chr7	75986836	75994673	7q11.23	7q11.23	616550	TMEM120A, TMPIT, NET29	Transmembrane protein 120A	TMEM120A	83862	ENSG00000189077			Tmem120a (MGI:2686991)
chr7	75995819	76049343	7q11.23	7q11.23	616695	STYXL1, MKSTYX, DUSP24	Serine/threonine/tyrosine-interacting protein-like 1	STYXL1	51657	ENSG00000127952			Styxl1 (MGI:1923821)
chr7	76048018	76067507	7q11.23	7q11.23	154100	MDH2, EIEE51	Malate dehydrogenase, mitochondrial	MDH2	4191	ENSG00000146701		Epileptic encephalopathy, early infantile, 51, 617339 (3), Autosomal recessive	Mdh2 (MGI:97050)
chr7	76302557	76304300	7q11.23	7q11.23	602195	HSPB1, HSP27, CMT2F, HMN2B	Heat-shock 27kD protein-1	HSPB1	3315	ENSG00000106211		Charcot-Marie-Tooth disease, axonal, type 2F, 606595 (3), Autosomal dominant; Neuropathy, distal hereditary motor, type IIB, 608634 (3), Autosomal dominant	Hspb1 (MGI:96240)
chr7	76326790	76359024	7q11.23	7q11.23	605356	YWHAG, EIEE56	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma isoform	YWHAG	7532	ENSG00000170027		Epileptic encephalopathy, early infantile, 56, 617665 (3), Autosomal dominant	Ywhag (MGI:108109)
chr7	76389328	76410024	7q11.23	7q11.23	607639	SRCRB4D	Protein with 4 group B scavenger receptor cysteine-rich domains	SSC4D	136853	ENSG00000146700			Ssc4d (MGI:1924709)
chr7	76397523	76442070	7q11.23	7q11.23	182889	ZP3, ZP3A, ZP3B, OOMD3	Zona pellucida glycoprotein-3 (sperm receptor)	ZP3	7784	ENSG00000188372		Oocyte maturation defect 3, 617712 (3), Autosomal dominant	Zp3 (MGI:99215)
chr7	76461654	76505994	7q11.23	7q11.23	613141	DTX2, KIAA1528	Deltex, Drosophila, homolog of, 2	DTX2	113878	ENSG00000091073			Dtx2 (MGI:1921448)
chr7	76510341	76516520	7q11.23	7q11.23	611887	UPK3B, UPIIIB, P35	Uroplakin 3B	UPK3B	105375355	ENSG00000243566			
chr7	76609985	76627302	7q11.2	7q11.23	600587	POMZP3	POM121/ZP3 fusion protein	POMZP3	22932	ENSG00000146707			
chr7	77193370	77199832	7q11.2	7q11.23	605351	FGL2	Fibrinogen-like 2	FGL2	10875	ENSG00000127951			Fgl2 (MGI:103266)
chr7	77310750	77416418	7q11.23	7q11.23	613552	GSAP, PION	Gamma-secretase-activating protein	GSAP	54103	ENSG00000186088			Gsap (MGI:2442259)
chr7	77537189	77640070	7q11.23	7q11.23	600079	PTPN12, PTPG1	Protein tyrosine phosphatase, nonreceptor-type, 12	PTPN12	5782	ENSG00000127947		Colon cancer, somatic, 114500 (3)	Ptpn12 (MGI:104673)
chr7	77657659	77697344	7q21	7q11.23	616048	APTR	Alu-mediated CDKN1A/p21 transcriptional regulator, noncoding	APTR	100505854				
chr7	77798791	77957503	7q11.23-q21	7q11.23-q21.11	616785	PHTF2	Putative homeodomain transcription factor 2	PHTF2	57157	ENSG00000006576			Phtf2 (MGI:1916020)
chr7	77900000	98400000	7q21		608950	MAGI2IT, PR47	MAGI2 intronic transcript						
chr7	77900000	107800000	7q21-q22		154276	MHS3	Malignant hyperthermia susceptibility 3		7977		?mutation in CACNA2	{Malignant hyperthermia susceptibility 3}, 154276 (2), Autosomal dominant	
chr7	77900000	98400000	7q21		612223	STQTL11	Stature quantitative trait locus 11		100270795		associated with rs2282978	{Stature QTL 11}, 612223 (2)	
chr7	78017054	79453573	7q21	7q21.11	606382	MAGI2, AIP1, KIAA0705	Membrane-associated guanylate kinase, WW and PDZ domains-containing, 2	MAGI2	9863	ENSG00000187391		Nephrotic syndrome 15, 617609 (3), Autosomal recessive	Magi2 (MGI:1354953)
chr7	80134823	80219408	7q21	7q21.11	139310	GNAI1	Guanine nucleotide-binding protein (G protein), alpha-inhibiting activity polypeptide-1	GNAI1	2770	ENSG00000127955			Gnai1 (MGI:95771)
chr7	80457290	80512502	7q21.11	7q21.11	139395	GNAT3, GDCA	Guanine nucleotide-binding protein, alpha-transducing activity polypeptide 3	GNAT3	346562	ENSG00000214415			Gnat3 (MGI:3588268)
chr7	80602187	80679276	7q21.11	7q21.11	173510	CD36, CHDS7, BDPLT10	CD36 antigen (collagen type I)	CD36	948	ENSG00000135218		{Coronary heart disease, susceptibility to, 7}, 610938 (3); [Macrothrombocytopenia] (1); {Malaria, cerebral, reduced risk of}, 611162 (3); {Malaria, cerebral, susceptibility to}, 611162 (3); Platelet glycoprotein IV deficiency, 608404 (3), Autosomal recessive	Cd36 (MGI:107899)
chr7	80742535	80922378	7q21.11	7q21.11	602645	SEMA3C	Semaphorin 3C	SEMA3C	10512	ENSG00000075223			Sema3c (MGI:107557)
chr7	81699005	81770437	7q21.1	7q21.11	142409	HGF, DFNB39	Hepatic growth factor	HGF	3082	ENSG00000019991		Deafness, autosomal recessive 39, 608265 (3), Autosomal recessive	Hgf (MGI:96079)
chr7	81946443	82443805	7q21-q22	7q21.11	114204	CACNA2, CACNL2A	Calcium channel, voltage-dependent, L type, alpha 2/delta subunit	CACNA2D1	781	ENSG00000153956			Cacna2d1 (MGI:88295)
chr7	82754004	83164160	7q11.23-q21.1	7q21.11	604918	PCLO, PCH3	Piccolo, mouse, homolog of	PCLO	27445	ENSG00000186472	mutation identified in 1 PCHD3 family	?Pontocerebellar hypoplasia, type 3, 608027 (3), Autosomal recessive	Pclo (MGI:1349390)
chr7	83363905	83649162	7q21.11	7q21.11	608166	SEMA3E, SEMAH, KIAA0331	Semaphorin 3E	SEMA3E	9723	ENSG00000170381	mutation identified in 1 CHARGE patient	?CHARGE syndrome, 214800 (3), Autosomal dominant	Sema3e (MGI:1340034)
chr7	83956845	84515188	7q21.11	7q21.11	603961	SEMA3A, SEMAD, COLL1, HH16	Semaphorin 3A	SEMA3A	10371	ENSG00000075213		{Hypogonadotropic hypogonadism 16 with or without anosmia}, 614897 (3), Autosomal dominant	Sema3a (MGI:107558)
chr7	84995191	85187175	7q21.11	7q21.11	609907	SEMA3D	Semaphorin 3D	SEMA3D	223117	ENSG00000153993			Sema3d (MGI:1860118)
chr7	86643913	86864878	7q21.1-q21.2	7q21.11-q21.12	601115	GRM3	Glutamate receptor, metabotropic-3	GRM3	2913	ENSG00000198822			Grm3 (MGI:1351340)
chr7	86876905	87059713	7q21.12	7q21.12	614048	KIAA1324L, EIG121L	KIAA1324-like gene	KIAA1324L	222223	ENSG00000164659			9330182L06Rik (MGI:2443264)
chr7	87152360	87196331	7q21.12	7q21.12	608491	DMTF1, DMP1	Cyclin D-binding MYB-like transcription factor 1	DMTF1	9988	ENSG00000135164			Dmtf1 (MGI:1344415)
chr7	87196161	87220586	7q21.12	7q21.12	616993	TMEM243, C7orf23, MMTRAG	Transmembrane protein 243	TMEM243	79161	ENSG00000135185			Tmem243 (MGI:3606159)
chr7	87325346	87345491	7q21.12	7q21.12	616403	TP53TG1	TP53 target gene 1	TP53TG1	11257				
chr7	87345634	87399795	7q21.1	7q21.12	606090	CROT, COT	Carnitine octanoyltransferase	CROT	54677	ENSG00000005469			Crot (MGI:1921364)
chr7	87398987	87476721	7q21.1	7q21.12	171060	ABCB4, PGY3, MDR3, ICP3	ATP-binding cassette, subfamily B, member 4 (P-glycoprotein-3/multiple drug resistance-3)	ABCB4	5244	ENSG00000005471	within 500kb of MDR1	Cholestasis, intrahepatic, of pregnancy, 3, 614972 (3), Autosomal recessive, Autosomal dominant; Cholestasis, progressive familial intrahepatic 3, 602347 (3), Autosomal recessive; Gallbladder disease 1, 600803 (3), Autosomal recessive, Autosomal dominant	Abcb4 (MGI:97569)
chr7	87503862	87713322	7q21.1	7q21.12	171050	ABCB1, PGY1, MDR1, IBD13, CLCs	ATP-binding cassette, subfamily B, member 1 (P-glycoprotein-1/multiple drug resistance-1)	ABCB1	5243	ENSG00000085563		{Colchicine resistance}, 120080 (3); {Inflammatory bowel disease 13}, 612244 (3)	Abcb1a (MGI:97570)
chr7	87627655	87832297	7q21.12	7q21.12	617295	RUNDC3B, RPIP9	RUN domain-containing protein 3B	RUNDC3B	154661	ENSG00000105784			Rundc3b (MGI:2685286)
chr7	87834498	87876376	7q21.12	7q21.12	610821	SLC25A40	Solute carrier family 25, member 40	SLC25A40	55972	ENSG00000075303			Slc25a40 (MGI:2442486)
chr7	87876228	87909540	7q21.3	7q21.12	604281	ASK, DBF4	Activator of S-phase kinase	DBF4	10926	ENSG00000006634			Dbf4 (MGI:1351328)
chr7	87934142	88202888	7q21	7q21.12	603709	ADAM22, EIEE61	A disintegrin and metalloproteinase domain 22	ADAM22	53616	ENSG00000008277	mutation identified in 1 EIEE61 patient	?Epileptic encephalopathy, early infantile, 61, 617933 (3), Autosomal recessive	Adam22 (MGI:1340046)
chr7	88205114	88226992	7q21.1	7q21.12	182520	SRI, SCN	Sorcin (class 4 gene)	SRI	6717	ENSG00000075142			Sri (MGI:98419)
chr7	88276428	88306912	7q21	7q21.12	611098	STEAP4, STAMP2, TIARP	Six-transmembrane epithelial antigen of prostate 4	STEAP4	79689	ENSG00000127954			Steap4 (MGI:1923560)
chr7	90154374	90164826	7q21	7q21.13	604415	STEAP	Six-transmembrane epithelial antigen of the prostate	STEAP1	26872	ENSG00000164647			Steap1 (MGI:1917608)
chr7	90211685	90243407	7q21	7q21.13	605094	STEAP2, STAMP1, IPCA1, PCANAP1	Six-transmembrane epithelial antigen of prostate 2	STEAP2	261729	ENSG00000157214			Steap2 (MGI:1921301)
chr7	90346664	90391454	7q21.13	7q21.13	610920	GTPBP10, OBGH2	GTP-binding protein 10	GTPBP10	85865	ENSG00000105793			Gtpbp10 (MGI:2385599)
chr7	90403333	90415953	7q21	7q21.13	611232	CLKDN12	Claudin 12	CLDN12	9069	ENSG00000157224			Cldn12 (MGI:1929288)
chr7	90595731	91210589	7q21.13	7q21.13	610679	CDK14, PFTK1, PFTAIRE1, KIAA0834	Cyclin-dependent kinase 14	CDK14	5218	ENSG00000058091			Cdk14 (MGI:894318)
chr7	91264467	91268816	7q21	7q21.13	603408	FZD1	Frizzled, Drosophila, homolog of, 1	FZD1	8321	ENSG00000157240			Fzd1 (MGI:1196625)
chr7	91500000	98400000	7q21.2-q21.3		183600	SHFM1, SHFD1, SHSF1	Split hand/foot malformation (ectrodactyly) type 1				contiguous gene deletion syndrome	Split hand/foot malformation 1, 183600 (4), Autosomal dominant	
chr7	91872875	91880732	7q21.2	7q21.2	602318	MTERF	Transcription termination factor, mitochondrial	MTERF1	7978	ENSG00000127989			Mterf1a,Mterf1b (MGI:1918240,MGI:3704243)
chr7	91940866	92112907	7q21-q22	7q21.2	604001	AKAP9, YOTIAO, AKAP450	A-kinase anchor protein 9	AKAP9	10142	ENSG00000127914	mutation identified in 1 LQT11 family	?Long QT syndrome-11, 611820 (3), Autosomal dominant	
chr7	92112148	92134744	7q21.2-q21.3	7q21.2	601637	CYP51A1, CYP51	Cytochrome P450, family 51, subfamily A, polypeptide 1 (lanosterol 14-alpha-demethylase)	CYP51A1	1595	ENSG00000001630			Cyp51 (MGI:106040)
chr7	92198968	92246099	7q11.2-q21	7q21.2	604214	CCM1, CAM, KRIT1	KREV interaction trapped 1	KRIT1	889	ENSG00000001631		Cavernous malformations of CNS and retina, 116860 (3), Autosomal dominant; Cerebral cavernous malformations-1, 116860 (3), Autosomal dominant; Hyperkeratotic cutaneous capillary-venous malformations associated with cerebral capillary malformations, 116860 (3), Autosomal dominant	Krit1 (MGI:1930618)
chr7	92447447	92494630	7q21.2	7q21.2	614518	GATAD1, ODAG, CMD2B	GATA zinc finger domain-containing protein 1	GATAD1	57798	ENSG00000157259	mutation identified in 1 GATAD1 family	?Cardiomyopathy, dilated, 2B, 614672 (3), Autosomal recessive	Gatad1 (MGI:1914460)
chr7	92468379	92477914	7q21-q22	7q21.2	604659	ERVW1, ERVWE1, HERVW	Endogenous retroviral family W, member 1 (syncytin)	ERVW-1	30816	ENSG00000242950			
chr7	92487022	92528530	7q21-q22	7q21.2	602136	PEX1, ZWS1, PBD1A, PBD1B, HMLR1	Peroxisome biogenesis factor-1	PEX1	5189	ENSG00000127980		Heimler syndrome 1, 234580 (3), Autosomal recessive; Peroxisome biogenesis disorder 1A (Zellweger), 214100 (3), Autosomal recessive; Peroxisome biogenesis disorder 1B (NALD/IRD), 601539 (3), Autosomal recessive	Pex1 (MGI:1918632)
chr7	92604920	92836626	7q21-q22	7q21.2	603368	CDK6, PLSTIRE, MCPH12	Cyclin-dependent kinase 6	CDK6	1021	ENSG00000105810	mutation identified in 1 MCPH12 family	?Microcephaly 12, primary, autosomal recessive, 616080 (3), Autosomal recessive	Cdk6 (MGI:1277162)
chr7	93099512	93118022	7q21	7q21.2	610456	SAMD9, NFTC, MIRAGE	Sterile alpha motif domain-containing protein 9	SAMD9	54809	ENSG00000205413		MIRAGE syndrome, 617053 (3), Autosomal dominant; Tumoral calcinosis, familial, normophosphatemic, 610455 (3), Autosomal recessive	
chr7	93130053	93148398	7q21.2	7q21.2	611170	SAMD9L, ATXPC	Sterile alpha motif domain-containing 9-like	SAMD9L	219285	ENSG00000177409		Ataxia-pancytopenia syndrome, 159550 (3), Autosomal dominant	Samd9l (MGI:1343184)
chr7	93188538	93232292	7q21.2-q21.3	7q21.2	614133	HEPACAM2, MIKI	Hepacam family member 2	HEPACAM2	253012	ENSG00000188175			Hepacam2 (MGI:2141520)
chr7	93232339	93361122	7q21.2-q21.3	7q21.2-q21.3	616465	VPS50, CCDC132, KIAA1861	VPS50, EARP/GARPII complex subunit	VPS50	55610	ENSG00000004766			Vps50 (MGI:1920538)
chr7	93424486	93574729	7q21.3	7q21.3	114131	CALCR, CRT	Calcitonin receptor	CALCR	799	ENSG00000004948	not deleted in Williams syndrome	{Osteoporosis, postmenopausal, susceptibility}, 166710 (3), Autosomal dominant	Calcr (MGI:101950)
chr7	93483935	93484018	7q21.3	7q21.3	614523	MIR489	Micro RNA 489	MIR489	574442		in intron 4 of CALCR		
chr7	93885396	93890990	7q22	7q21.3	600033	TFPI2	Tissue factor pathway inhibitor-2	TFPI2	7980	ENSG00000105825			Tfpi2 (MGI:108543)
chr7	93906507	93911264	7q21.3	7q21.3	189970	GNGT1	Guanine nucleotide-binding protein, gamma-transducing activity polypeptide 1	GNGT1	2792	ENSG00000127928			Gngt1 (MGI:109165)
chr7	93921703	93926513	7q21.3	7q21.3	604390	GNG11	Guanine nucleotide-binding protein, gamma 11	GNG11	2791	ENSG00000127920			Gng11 (MGI:1913316)
chr7	93962769	94004381	7q21.3	7q21.3	605456	BET1	Bet1 golgi vesicular membrane-trafficking protein	BET1	10282	ENSG00000105829			Bet1 (MGI:1343104)
chr7	94394560	94431231	7q22.1	7q21.3	120160	COL1A2, EDSCV, EDSARTH2	Collagen I, alpha-2 polypeptide	COL1A2	1278	ENSG00000164692	~17cM from CF	Ehlers-Danlos syndrome, arthrochalasia type, 2, 617821 (3), Autosomal dominant; Ehlers-Danlos syndrome, cardiac valvular type, 225320 (3), Autosomal recessive; imperfecta, type III, 259420 (3), Autosomal dominant; Osteogenesis imperfecta, type II, 166210 (3), Autosomal dominant; Osteogenesis imperfecta, type IV, 166220 (3), Autosomal dominant; {Osteoporosis, postmenopausal}, 166710 (3), Autosomal dominant	Col1a2 (MGI:88468)
chr7	94509857	94633464	7q21	7q21.3	611686	CASD1, C7orf12	CAS1 domain-containing protein 1	CASD1	64921	ENSG00000127995			Casd1 (MGI:2384865)
chr7	94585223	94656208	7q21	7q21.3	604149	SGCE, DYT11	Sarcoglycan, epsilon	SGCE	8910	ENSG00000127990	pseudogene on 2q21; maternally imprinted	Dystonia-11, myoclonic, 159900 (3), Autosomal dominant	Sgce (MGI:1329042)
chr7	94656324	94669694	7q21	7q21.3	609810	PEG10, KIAA1051	Paternally expressed gene 10	PEG10	23089	ENSG00000242265			Peg10 (MGI:2157785)
chr7	94907201	95296414	7q21.3	7q21.3	602468	PPP1R9A, NRBI, NRB1, KIAA1222	Protein phosphatase 1, regulatory subunit 9A (neurabin I)	PPP1R9A	55607	ENSG00000158528			Ppp1r9a (MGI:2442401)
chr7	95297675	95324705	7q21.3	7q21.3	168820	PON1, PON, ESA, MVCD5	Paraoxonase-1	PON1	5444	ENSG00000005421		{Coronary artery disease, susceptibility to} (3); {Coronary artery spasm 2, susceptibility to (3); {Microvascular complications of diabetes 5}, 612633 (3); {Organophosphate poisoning, sensitivity to} (3)	Pon1 (MGI:103295)
chr7	95359871	95396374	7q21.3	7q21.3	602720	PON3	Paraoxonase-3	PON3	5446	ENSG00000105852			Pon3 (MGI:106686)
chr7	95404861	95435071	7q21.3	7q21.3	602447	PON2	Paraoxonase-2	PON2	5445	ENSG00000105854		{Coronary artery disease, susceptibility to} (3)	Pon2 (MGI:106687)
chr7	95485438	95544737	7q21-q22	7q21.3	605761	ASB4	Ankyrin repeat-containing SOCS box protein 4	ASB4	51666	ENSG00000005981			Asb4 (MGI:1929751)
chr7	95583496	95596612	7q21.3-q22.1	7q21.3	602527	PDK4	Pyruvate dehydrogenase kinase, isoenzyme 4	PDK4	5166	ENSG00000004799			Pdk4 (MGI:1351481)
chr7	95772505	96110321	7q21.3-q22.1	7q21.3	603772	DNCI1	Dynein, cytoplasmic, intermediate chain 1	DYNC1I1	1780	ENSG00000158560			Dync1i1 (MGI:107743)
chr7	96120219	96322146	7q21.3	7q21.3	603859	SLC25A13, CTLN2	Solute carrier family 25 (mitochondrial carrier, citrin), member 13	SLC25A13	10165	ENSG00000004864		Citrullinemia, adult-onset type II, 603471 (3), Autosomal recessive; Citrullinemia, type II, neonatal-onset, 605814 (3), Autosomal recessive	Slc25a13 (MGI:1354721)
chr7	96481625	96709890	7q21.3-q22.1	7q21.3	601285	SEM!, DSS1	Proteasome 26S subunit SEM1	SEM1	7979	ENSG00000127922	?gene mutant in SHFM1		Sem1 (MGI:109238)
chr7	97005977	97011039	7q22	7q21.3	600030	DLX6	Distal-less homeo box-6	DLX6	1750	ENSG00000006377			Dlx6 (MGI:101927)
chr7	97020389	97024830	7q22	7q21.3	600028	DLX5, SHFM1D	Distal-less homeo box-5	DLX5	1749	ENSG00000105880	mutation identified in 1 family	?Split-hand/foot malformation 1 with sensorineural hearing loss, 220600 (3), Autosomal recessive	Dlx5 (MGI:101926)
chr7	97116592	97181762	7q21.3	7q21.3	615773	ACN9	Acn9, S. cerevisiae, homolog of	SDHAF3	57001	ENSG00000196636			Sdhaf3 (MGI:1913288)
chr7	97731958	97740471	7q21-q22	7q21.3	162320	TAC1, TAC2, NKNA	Tachykinin 1 (substance K; neurokinin A; neurokinin 2; neuromedin L; neuropeptide gamma; tachykinin 2)	TAC1	6863	ENSG00000006128			Tac1 (MGI:98474)
chr7	97852116	97928561	7q21-q31	7q21.3	108370	ASNS, ASNSD	Asparagine synthetase	ASNS	440	ENSG00000070669	temperature sensitive G1 mutant	Asparagine synthetase deficiency, 615574 (3), Autosomal recessive	Asns (MGI:1350929)
chr7	98106867	98209635	7q21.3-q22.1	7q21.3	610989	LMTK2, KPI2, BREK, KIAA1079	Lemur tyrosine kinase 2	LMTK2	22853	ENSG00000164715			Lmtk2 (MGI:3036247)
chr7	98212253	98212958	7q21	7q21.3	608606	BHLHA15, MIST1	Basic helix-loop-helix family, member A15	BHLHA15	168620	ENSG00000180535			Bhlha15 (MGI:891976)
chr7	98215442	98252250	7q21.3	7q21.3	614781	TECPR1, KIAA1358	Tectonin beta-propeller repeat-containing 1	TECPR1	25851	ENSG00000205356			Tecpr1 (MGI:1917631)
chr7	98281666	98322397	7q21.3	7q21.3	615628	BRI3	Brain protein I3	BRI3	25798	ENSG00000164713			Bri3 (MGI:1933174)
chr7	98291649	98401114	7q21.3-q22.1	7q21.3-q22.1	611877	BAIAP2L1, IRTKS	BAI1-associated protein 2-like 1	BAIAP2L1	55971	ENSG00000006453			Baiap2l1 (MGI:1914148)
chr7	98400000	107800000	7q22		209850	AUTS1	Autism, susceptibility to, 1		100188832			{Autism susceptibility 1}, 209850 (2), Isolated cases, Multifactorial	
chr7	98400000	132900000	7q22-q32		148750	G7P1	Kinase-like protein						
chr7	98400000	104200000	7q22.1		612130	GAEC1	Gene amplified in esophageal cancer 1		100126794				
chr7	98400000	107800000	7q22		191390	IBD11	Inflammatory bowel disease 11		100529151		associated with MUC3A	{Inflammatory bowel disease 11}, 191390 (2), Multifactorial	
chr7	98400000	107800000	7q22		605633	MUC3B	Mucin 3B, intestinal	MUC3B	57876				
chr7	98400000	107800000	7q22		608580	MYH16	Myosin, heavy chain 16, skeletal muscle	MYH16	84176		inactivated in humans; expressed in masticatory muscles in nonhuman primates		
chr7	98400000	159345973	7q22-qter		162820	NM, NCR	Neutrophil migration, abnormal	NM	4827			?Neutrophil chemotactic response, abnormal, 162820 (2), Autosomal dominant	
chr7	98400000	107800000	7q22		608562	PAPA4	Polydactyly, postaxial, type A4		450096		highest lod with D7S1799	Polydactyly, postaxial, type A4, 608562 (2)	
chr7	98400000	132900000	7q22-q32		607458	SCA18, SMNA	Spinal cerebellar ataxia 18	SCA18	94008		between D7S2418 and D7S1804	Spinocerebellar ataxia 18, 607458 (2), Autosomal dominant	
chr7	98617284	98629868	7q21.3-q22.1	7q22.1	600750	NPTX2	Pentraxin II	NPTX2	4885	ENSG00000106236			Nptx2 (MGI:1858209)
chr7	98878489	99013242	7q21.2-q22.1	7q22.1	603015	TRRAP	Transformation/transcription domain-associated protein	TRRAP	8295	ENSG00000196367			Trrap (MGI:2153272)
chr7	99027434	99144119	7q21.1-q31.1	7q22.1	605568	SMURF1	SMAD ubiquitination regulatory factor 1	SMURF1	57154	ENSG00000198742			Smurf1 (MGI:1923038)
chr7	99145466	99219416	7q22.1	7q22.1	614107	KPNA7	Karyopherin alpha 7	KPNA7	402569	ENSG00000185467			Kpna7 (MGI:2141165)
chr7	99325872	99366261	7q21-q22	7q22.1	604220	ARPC1A, SOP2L	Actin-related protein 2/3 complex, subunit 1A	ARPC1A	10552	ENSG00000241685			Arpc1a (MGI:1928896)
chr7	99374253	99394804	7q21-q22	7q22.1	604223	ARPC1B, ARC41, PLTEID	Actin-related protein 2/3 complex, subunit 1B	ARPC1B	10095	ENSG00000130429		Platelet abnormalities with eosinophilia and immune-mediated inflammatory disease, 617718 (3), Autosomal recessive	Arpc1b (MGI:1343142)
chr7	99394672	99408681	7q22.1	7q22.1	607075	PDAP1, PAP1, PAP	PDGFA-associated protein 1	PDAP1	11333	ENSG00000106244			Pdap1 (MGI:2448536)
chr7	99408619	99419615	7q22.1	7q22.1	603477	BUD31, G10	Bud31, S. cerevisiae, homolog of	BUD31	8896	ENSG00000106245			
chr7	99416738	99438838	7q22.1	7q22.1	614774	PTCD1, KIAA0632	Pentatricopeptide repeat domain 1	PTCD1	26024	ENSG00000106246			
chr7	99438911	99457376	7q21-q22	7q22.1	603052	CPSF4, CPSF30, NEB1	Cleavage-polyadenylation specificity factor 4, 30kD	CPSF4	10898	ENSG00000160917			Cpsf4 (MGI:1861602)
chr7	99504643	99534105	7q22.1	7q22.1	611272	ZKSCAN5, ZFP95, KIAA1015	Zinc finger protein with KRAB and SCAN domains 5	ZKSCAN5	23660	ENSG00000196652			Zkscan5 (MGI:107533)
chr7	99558421	99576452	7q22.1	7q22.1	617891	ZNF655, VIK	Zinc finger protein 655	ZNF655	79027	ENSG00000197343			Zfp655 (MGI:1919861)
chr7	99648188	99680025	7q22.1	7q22.1	605325	CYP3A5, P450PCN3	Cytochrome P450, subfamily IIIA, polypeptide 5	CYP3A5	1577	ENSG00000106258		{Hypertension, salt-sensitive essential, susceptibility to}, 145500 (3), Multifactorial	Cyp3a16,Cyp3a11,Cyp3a41b,Cyp3a44,Cyp3a41a (MGI:2449818,MGI:106099,MGI:3714859,MGI:88609,MGI:1858451)
chr7	99705036	99735199	7q22.1	7q22.1	605340	CYP3A7	Cytochrome P450, subfamily IIIA, polypeptide 7	CYP3A7	1551	ENSG00000160870			Cyp3a13 (MGI:88610)
chr7	99756959	99784187	7q22.1	7q22.1	124010	CYP3A4	Cytochrome P450, subfamily IIIA (nifedipine oxidase) polypeptide 4	CYP3A4	1576	ENSG00000160868			
chr7	99827625	99867137	7q22.1	7q22.1	606534	CYP3A43	Cytochrome P450, subfamily IIIa, polypeptide 43	CYP3A43	64816	ENSG00000021461			
chr7	99923268	99929619	7q22.1	7q22.1	611925	GJC3, CX30.2, CX31.3	Gap junction protein, gamma-3	GJC3	349149	ENSG00000176402			Gjc3 (MGI:2153041)
chr7	99966726	99976111	7q22.1	7q22.1	194460	AZGP1, ZAG	Alpha-2-glycoprotein, zinc	AZGP1	563	ENSG00000160862			Azgp1 (MGI:103163)
chr7	100015551	100045373	7q21-q22	7q22.1	601260	ZNF36, KOX18	Zinc finger protein-36 (KOX 18)	ZKSCAN1	7586	ENSG00000106261			Zkscan1 (MGI:1921820)
chr7	100049773	100065040	7q21-q22	7q22.1	601261	ZNF38, KOX25	Zinc finger protein-38 (KOX 25)	ZSCAN21	7589	ENSG00000166529			Zscan21 (MGI:99182)
chr7	100063846	100082547	7q22.1	7q22.1	194510	ZNF3	Zinc finger protein-3	ZNF3	7551	ENSG00000166526	?relation to ZNF4, ZNF5; previous assignment to Chr.5		Zfp113 (MGI:1929116)
chr7	100088959	100092199	7q22.1	7q22.1	614729	COPS6, CSN6	COP9 signalosome, subunit 6	COPS6	10980	ENSG00000168090			Cops6 (MGI:1349439)
chr7	100092727	100101939	7q21.3-q22.1	7q22.1	600592	MCM7, MCM2	Minichromosome maintenance deficient, S. cerevisiae, homolog of, 7	MCM7	4176	ENSG00000166508			Mcm7 (MGI:1298398)
chr7	100093559	100093642	7q22.1	7q22.1	612150	MIR25, MIRN25	Micro RNA 25	MIR25	407014				
chr7	100093767	100093846	7q22	7q22.1	612984	MIR93, MIRN9	Micro RNA 93	MIR93	407050				
chr7	100093992	100094073	7q22	7q22.1	612983	MIR106B, MIRN106B	Micro RNA 106B	MIR106B	406900				
chr7	100101412	100107179	7q22.1	7q22.1	602296	AP4M1, SPG50, CPSQ3	Adaptor-related protein complex 4, mu-1 subunit	AP4M1	9179	ENSG00000221838		Spastic paraplegia 50, autosomal recessive, 612936 (3), Autosomal recessive	Ap4m1 (MGI:1337063)
chr7	100107069	100127207	7q22.1	7q22.1	602955	TAF6, TAF2E, TAFII80, ALYUS	TAF6 RNA polymerase II, TATA box-binding protein-associated factor, 80kD	TAF6	6878	ENSG00000106290		Alazami-Yuan syndrome, 617126 (3), Autosomal recessive	Taf6 (MGI:109129)
chr7	100119641	100125507	7q22.1	7q22.1	610047	CNPY4, PRAT4B, MGC40499	Canopy 4, zebrafish, homolog of	CNPY4	245812	ENSG00000166997			Cnpy4 (MGI:1913705)
chr7	100159241	100168749	7q22	7q22.1	608235	GAL3ST4	Galactose-3-O-sulfotransferase 4	GAL3ST4	79690	ENSG00000197093			Gal3st4 (MGI:1916254)
chr7	100177562	100219333	7q22	7q22.1	608489	STAG3, POF8	Stromalin 3	STAG3	10734	ENSG00000066923		Premature ovarian failure 8, 615723 (3), Autosomal recessive	Stag3 (MGI:1355311)
chr7	100218624	100221488	7q22.1	7q22.1	617012	PVRIG, CD112R, C7orf15	Poliovirus receptor-related immunoglobulin domain-containing protein	PVRIG	79037	ENSG00000213413			Pvrig (MGI:5596028)
chr7	100306797	100322195	7q22.1	7q22.1	617625	SPDYE3, SPDYB2	SPEEDY/RINGO cell cycle regulator family, member E3	SPDYE3	441272	ENSG00000214300			
chr7	100320639	100336306	7q22.1	7q22.1	605038	PMS2P1, PMS2L1, PMS3	Postmeiotic segregation increased 2 pseudogene 1	PMS2P1	5379				
chr7	100358002	100367830	7q22	7q22.1	605342	PILRB	Paired immunoglobulin-like receptor, beta	PILRB	29990	ENSG00000121716			Pilrb1,Pilrb2 (MGI:2450532,MGI:2450535)
chr7	100372658	100400098	7q22	7q22.1	605341	PILRA	Paired immunoglobulin-like receptor, alpha	PILRA	29992	ENSG00000085514			Pilra (MGI:2450529)
chr7	100428789	100434125	7q22	7q22.1	611478	MEPCE, BCDIN3	Methylphosphate capping enzyme	MEPCE	56257	ENSG00000146834			Mepce (MGI:106477)
chr7	100466518	100479278	7p21-p15	7q22.1	611914	TSC22D4, THG1	TSC22 domain family, member 4	TSC22D4	81628	ENSG00000166925			Tsc22d4 (MGI:1926079)
chr7	100483926	100494801	7q22.1	7q22.1	615477	NYPA1	Neuronal tyrosine-phosphorylated phosphoinositide 3-kinase adaptor 1	NYAP1	222950	ENSG00000166924			Nyap1 (MGI:2443880)
chr7	100539210	100568219	7q22.1	7q22.1	604019	AGFG2, HRBL, RABR	ADP-ribosylation factor GTPase-activating protein with FG repeats 2	AGFG2	3268	ENSG00000106351			Agfg2 (MGI:2443267)
chr7	100574034	100574732	7q22	7q22.1	617677	ZASP	ZO2-associated speckle protein		101927655				
chr7	100582489	100601116	7q22	7q22.1	609097	FBXO24, FBX24	F-box only protein 24	FBXO24	26261	ENSG00000106336			Fbxo24 (MGI:1918426)
chr7	100602258	100608174	7q21.3-q22	7q22.1	600270	PCOLCE	Procollagen C-endopeptidase enhancer	PCOLCE	5118	ENSG00000106333			Pcolce (MGI:105099)
chr7	100620415	100642779	7q22	7q22.1	604720	TFR2, HFE3	Transferrin receptor 2	TFR2	7036	ENSG00000106327		Hemochromatosis, type 3, 604250 (3), Autosomal recessive	Tfr2 (MGI:1354956)
chr7	100643096	100656460	7q22	7q22.1	612458	ACTL6B, BAF53B	Actin-like 6B	ACTL6B	51412	ENSG00000077080			Actl6b (MGI:1933548)
chr7	100673739	100679168	7q21	7q22.1	139390	GNB2	Guanine nucleotide-binding protein, beta polypeptide-2	GNB2	2783	ENSG00000172354	30-70kb from EPO		Gnb2 (MGI:95784)
chr7	100679505	100694279	7q22.1	7q22.1	612064	GIGYF1	GRB10-interacting GYF protein 1	GIGYF1	64599	ENSG00000146830			Gigyf1 (MGI:1888677)
chr7	100706052	100707499	7q22	7q22.1	606113	POP7, RPP20	Processing of precursor 7, S. cerevisiae, homolog of	POP7	10248	ENSG00000172336			Pop7 (MGI:1921347)
chr7	100720799	100723699	7q21	7q22.1	133170	EPO, MVCD2, ECYT5, DBAL	Erythropoietin	EPO	2056	ENSG00000130427	mutation identified in 1 DBAL family	?Diamond-Blackfan anemia-like, 617911 (3), Autosomal recessive; Erythrocytosis, familial, 5, 617907 (3), Autosomal dominant; {Microvascular complications of diabetes 2}, 612623 (3)	Epo (MGI:95407)
chr7	100733598	100797796	7q22	7q22.1	602372	ZAN	Zonadhesin	ZAN	7455	ENSG00000146839			Zan (MGI:106656)
chr7	100802564	100827520	7q22	7q22.1	600011	EPHB4, HTK, MYK1, HFASD	Ephrin receptor EphB4 (hepatoma transmembrane kinase)	EPHB4	2050	ENSG00000196411		{Hydrops fetalis, nonimmune, and/or atrial septal defect}, 617300 (3), Autosomal dominant	Ephb4 (MGI:104757)
chr7	100826873	100867011	7q22	7q22.1	616861	SLC12A9, CIP1, CCC6	Solute carrier family 12 (potassium/chloride transporter), member 9	SLC12A9	56996	ENSG00000146828			Slc12a9 (MGI:1933532)
chr7	100867327	100873453	7q22	7q22.1	602933	TRIP6, OIP1	Thyroid hormone receptor interactor-6	TRIP6	7205	ENSG00000087077			Trip6 (MGI:1343458)
chr7	100874970	100888663	7q22	7q22.1	614469	SRRT, ARS2	Serrate RNA effector molecule, arabidopsis, homolog of	SRRT	51593	ENSG00000087087			Srrt (MGI:1933527)
chr7	100888722	100889717	7q22.1	7q22.1	611481	UFSP1	UFM1-specific protease 1	UFSP1	402682	ENSG00000176125			Ufsp1 (MGI:1917490)
chr7	100889993	100896132	7q22	7q22.1	100740	ACHE, YT	Acetylcholinesterase (YT blood group)	ACHE	43	ENSG00000087085	blood group YT (112100) = epitope of ACHE	[Blood group, Yt system], 112100 (3)	Ache (MGI:87876)
chr7	100949053	100968346	7q22	7q22.1	158371	MUC3A	Mucin 3A, intestinal	MUC3A	4584	ENSG00000169894			Muc3a (MGI:3588263)
chr7	100969622	101018948	7q22	7q22.1	604609	MUC12, MUC11	Mucin 12	MUC12	10071	ENSG00000205277			
chr7	101020082	101058858	7q22	7q22.1	608424	MUC17	Mucin 17	MUC17	140453	ENSG00000169876			
chr7	101085423	101091741	7q22.1	7q22.1	616996	TRIM56	Tripartite motif-containing protein 56	TRIM56	81844	ENSG00000169871			Trim56 (MGI:2685298)
chr7	101127088	101139265	7q21.3-q22	7q22.1	173360	PAI1, PLANH1, SERPINE1	Plasminogen activator inhibitor, type I	SERPINE1	5054	ENSG00000106366		Plasminogen activator inhibitor-1 deficiency, 613329 (3), Autosomal recessive, Autosomal dominant; {Transcription of plasminogen activator inhibitor, modulator of} (3)	Serpine1 (MGI:97608)
chr7	101154397	101161276	7q22.1	7q22.1	603531	AP1S1, CLAPS1, AP19, MEDNIK	Adaptor-related protein complex 1, sigma 1 subunit	AP1S1	1174	ENSG00000106367		MEDNIK syndrome, 609313 (3), Autosomal recessive	Ap1s1 (MGI:1098244)
chr7	101162508	101169955	7q22	7q22.1	602186	VGF	VGF nerve growth factor inducible	VGF	7425	ENSG00000128564			Vgf (MGI:1343180)
chr7	101170492	101180275	7q22.1	7q22.1	615783	NAT16	N-acetyltransferase 16	NAT16	375607	ENSG00000167011			
chr7	101192885	101201130	7q22.1	7q22.1	610184	MOGAT3, MGAT3	Monoacylglycerol O-acyltransferase 3	MOGAT3	346606	ENSG00000106384			
chr7	101205976	101217729	7q22	7q22.1	603066	PLOD3, LH3	Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 (lysyl hydroxylase 3)	PLOD3	8985	ENSG00000106397	previously assigned to 7q36	Lysyl hydroxylase 3 deficiency, 612394 (3), Autosomal recessive	Plod3 (MGI:1347008)
chr7	101232091	101238819	7q22.1	7q22.1	615778	CLDN15	Claudin 15	CLDN15	24146	ENSG00000106404			Cldn15 (MGI:1913103)
chr7	101239611	101245089	7q22.1	7q22.1	609003	TTC11, FIS1	Tetratricopeptide repeat domain 11	FIS1	51024	ENSG00000214253			Fis1 (MGI:1913687)
chr7	101613324	101629295	7q22.1	7q22.1	617177	MYL10, PLRLC	Myosin light chain 10	MYL10	93408	ENSG00000106436			Myl10 (MGI:1891705)
chr7	101815903	102283957	7q22	7q22.1	116896	CUTL1, CDP	Cut, Drosophila, homolog of (CCAAT displacement protein)	CUX1	1523	ENSG00000257923			
chr7	102284524	102321710	7q22	7q22.1	605300	APS	Adaptor protein containing PH and SH2 domains	SH2B2	10603	ENSG00000160999			Sh2b2 (MGI:1345171)
chr7	102396356	102426681	7q22.1	7q22.1	617458	PRKRIP1, C114	PRKR-interacting protein 1, IL11-inducible	PRKRIP1	79706	ENSG00000128563			Prkrip1 (MGI:1914051)
chr7	102433529	102456820	7q22.1	7q22.1	610929	ORAI2, MEM142B, C7orf19	ORAI calcium release-activated calcium modulator 2	ORAI2	80228	ENSG00000160991			Orai2 (MGI:2443195)
chr7	102456219	102464873	7q22.1	7q22.1	613302	ALKBH4, ABH4	AlkB, E. coli, homolog of, 4	ALKBH4	54784	ENSG00000160993			Alkbh4 (MGI:1919291)
chr7	102464882	102473167	7q22.1	7q22.1	615167	LRWD1, ORCA	Leucine-rich repeats- and WD repeat domain-containing protein 1	LRWD1	222229	ENSG00000161036			Lrwd1 (MGI:1918985)
chr7	102473099	102478933	7q22-q31.1	7q22.1	604150	POLR2J	Polymerase II, RNA, subunit J	POLR2J	5439	ENSG00000005075			Polr2j (MGI:109582)
chr7	102579645	102616757	7q22	7q22.1	607943	RASA4, CAPRI, GAPL, KIAA0538	Ras p21 protein activator 4	RASA4	10156	ENSG00000105808			Rasa4 (MGI:1858600)
chr7	102636747	102671728	7q11.2	7q22.1	609881	POLR2J2, RPB11	RNA polymerase II polypeptide J-related gene	POLR2J2	246721	ENSG00000228049			
chr7	102810965	103075215	7q22.1	7q22.1	609080	EBXL13, FBL13	F-box and leucine-rich repeat protein 13	FBXL13	222235	ENSG00000161040			Fbxl13 (MGI:2443416)
chr7	102973436	102978666	7q22.1	7q22.1	612133	NFE4	Transcription factor NFE4	NFE4	58160	ENSG00000230257			
chr7	103074880	103099772	7q11.2	7q22.1	611864	ARMC10, SVH	Armadillo repeat-containing 10	ARMC10	83787	ENSG00000170632			Armc10 (MGI:1914461)
chr7	103099575	103149559	7q22.1	7q22.1	612334	NAPEPLD	N-acyl phosphatidylethanolamine-hydrolyzing phospholipase D	NAPEPLD	222236	ENSG00000161048			Napepld (MGI:2140885)
chr7	103297425	103329901	7q22-q31.1	7q22.1	603131	MPPB	Mitochondrial processing peptidase-beta	PMPCB	9512	ENSG00000105819			Pmpcb (MGI:1920328)
chr7	103312473	103344872	7q22	7q22.1	605502	DNAJC2, ZRF1, MPP11	DnaJ (Hsp40) homolog, subfamily C, member 2	DNAJC2	27000	ENSG00000105821			Dnajc2 (MGI:99470)
chr7	103344404	103369394	7q22.1-q22.3	7q22.1	154365	PSMC2, MSS1, S7	Proteasome 26S subunit, ATPase, 2	PSMC2	5701	ENSG00000161057			Psmc2 (MGI:109555)
chr7	103352597	103446176	7q22.1	7q22.1	604943	SLC26A5, PRES, DFNB61	Solute carrier family 26, member 5	SLC26A5	375611	ENSG00000170615	mutation identified in 1 DFNB61 family	?Deafness, autosomal recessive 61, 613865 (3), Autosomal recessive	Slc26a5 (MGI:1933154)
chr7	103471783	103989515	7q22	7q22.1	600514	RELN, RL, LIS2, ETL7	Reelin	RELN	5649	ENSG00000189056		{Epilepsy, familial temporal lobe, 7}, 616436 (3), Autosomal dominant; Lissencephaly 2 (Norman-Roberts type), 257320 (3), Autosomal recessive	Reln (MGI:103022)
chr7	104126340	104208046	7q22.1	7q22.1-q22.2	602331	ORC5, ORC5L	Origin recognition complex, subunit 5, S. cerevisiae, homolog of	ORC5	5001	ENSG00000164815			Orc5 (MGI:1347044)
chr7	104328655	104908557	7q22.1	7q22.2-q22.3	609719	LHFPL3	LHFP-like protein 3	LHFPL3	375612				Lhfpl3 (MGI:1925076)
chr7	104900000	115000000	7q22.3-q31.1		609915	CMD1Q	Cardiomyopathy, dilated, 1Q	CMD1Q	664728		between D7S2545 and D7S2554	Cardiomyopathy, dilated, 1Q, 609915 (2)	
chr7	104900000	107800000	7q22.3		614646	MPVQTL6	Mean platelet volume quantitative trait locus 6		100887751		associated with rs342293	Mean platelet volume QTL6, 614646 (2)	
chr7	104940948	105114084	7q22	7q22.3	608444	KMT2E, MLL5	Lysine (K)-specific methyltransferase 2E	KMT2E	55904	ENSG00000005483			Kmt2e (MGI:1924825)
chr7	105456500	105522257	7q22.3	7q22.3	616261	PUS7, KIAA1897	Pseudouridylate synthase 7, putative	PUS7	54517	ENSG00000091127			Pus7 (MGI:1925947)
chr7	105532080	105567683	7q22.3	7q22.3	610089	RINT1	RAD50-interacting protein 1	RINT1	60561	ENSG00000135249			Rint1 (MGI:1916233)
chr7	105876749	106036430	7q22.3	7q22.3	615610	CDHR3	Cadherin-related family, member 3	CDHR3	222256	ENSG00000128536			Cdhr3 (MGI:1916014)
chr7	106090367	106112646	7q22.3	7q22.3	616665	SYPL1, SYPL	Synaptophysin-like 1	SYPL1	6856	ENSG00000008282			Sypl (MGI:108081)
chr7	106248284	106285191	7q22.2	7q22.3	608764	NAMPT, PBEF1, VF, PBEF	Nicotinamide phosphoribosyltransferase	NAMPT	10135	ENSG00000105835			Nampt (MGI:1929865)
chr7	106865277	106908977	7q22	7q22.3	601232	PIK3CG	Phosphatidylinositol 3-kinase, catalytic, gamma	PIK3CG	5294	ENSG00000105851			Pik3cg (MGI:1353576)
chr7	107044727	107161810	7q22	7q22.3	176912	PRKAR2B	Protein kinase, cAMP-dependent, regulatory, type II, beta	PRKAR2B	5577	ENSG00000005249			Prkar2b (MGI:97760)
chr7	107168960	107202528	7q22.3	7q22.3	616714	HBP1	HMG-box transcription factor 1	HBP1	26959	ENSG00000105856			Hbp1 (MGI:894659)
chr7	107201743	107564513	7q31	7q22.3	606821	COG5, GOLTC1, GTC90, CDG2I	Component of oligomeric golgi complex 5	COG5	10466	ENSG00000164597		Congenital disorder of glycosylation, type IIi, 613612 (3)	Cog5 (MGI:2145130)
chr7	107470056	107476206	7q22-q31.1	7q22.3	601910	GPR22	G protein-coupled receptor-22	GPR22	2845	ENSG00000172209			Gpr22 (MGI:1920260)
chr7	107660634	107717808	7q31	7q22.3	605646	SLC26A4, PDS, DFNB4, EVA, TDH2B	Solute carrier family 26 (sulfate transporter), member 4	SLC26A4	5172	ENSG00000091137	some patients have digenic mutations with FOXI1	Deafness, autosomal recessive 4, with enlarged vestibular aqueduct, 600791 (3), Autosomal recessive; Pendred syndrome, 274600 (3), Autosomal recessive	Slc26a4 (MGI:1346029)
chr7	107743696	107764996	7q22.3	7q22.3	606872	CBLL1, HAKAI, RNF188	Cas-Br-M murine ectopic retroviral transforming sequence like-1	CBLL1	79872	ENSG00000105879			Cbll1 (MGI:2144842)
chr7	107765466	107803232	7q22-q31.1	7q22.3-q31.1	126650	SLC26A3, DRA, CLD	Solute carrier family 26 (sulfate transporter), member 3	SLC26A3	1811	ENSG00000091138	5' and close to PDS	Diarrhea 1, secretory chloride, congenital, 214700 (3), Autosomal recessive	Slc26a3 (MGI:107181)
chr7	107800000	127500000	7q31		611015	AUTS9	Autism, susceptibility to, 9				max lod near D7S530	{Autism, susceptibility to, 9}, 611015 (2)	
chr7	107800000	127500000	7q31		603678	DFNB14	Deafness, autosomal recessive 14	DFNB14	1706		?same as DFNB17	Deafness, autosomal recessive 14, 603678 (2), Autosomal recessive	
chr7	107800000	127500000	7q31		603010	DFNB17	Deafness, autosomal recessive 17	DFNB17	1709			Deafness, autosomal recessive 17, 603010 (2), Autosomal recessive	
chr7	107891106	107921197	7q31-q32	7q31.1	238331	DLD, LAD, PHE3, DLDD	Dihydrolipoamide dehydrogenase (E3 component of pyruvate dehydrogenase complex, 2-oxo-glutarate complex)	DLD	1738	ENSG00000091140		Dihydrolipoamide dehydrogenase deficiency, 246900 (3), Autosomal recessive	Dld (MGI:107450)
chr7	107923798	108003358	7q31.1-q31.3	7q31.1	150240	LAMB1, LIS5	Laminin, beta-1	LAMB1	3912	ENSG00000091136		Lissencephaly 5, 615191 (3), Autosomal recessive	Lamb1 (MGI:96743)
chr7	108011661	108130355	7q31.1	7q31.1	616380	LAMB4	Laminin, beta-4	LAMB4	22798	ENSG00000091128			
chr7	108147625	108456441	7q31.1-q31.2	7q31.1	601581	NRCAM	Neuronal cell adhesion molecule	NRCAM	4897	ENSG00000091129			Nrcam (MGI:104750)
chr7	108470421	108528160	7q31	7q31.1	612123	PNPLA8, MMLA	Patatin-like phospholipase domain-containing protein 8	PNPLA8	50640	ENSG00000135241	mutation identified in 1 MMLA family	?Mitochondrial myopathy with lactic acidosis, 251950 (3), Autosomal recessive	Pnpla8 (MGI:1914702)
chr7	108562143	108569767	7q31.1	7q31.1	612534	THAP5	THAP domain-containing protein 5	THAP5	168451	ENSG00000177683			
chr7	108569744	108574849	7q31.1	7q31.1	602634	DNAJB9, MDG1	DnaJ, E. coli, homolog of, subfamily B, member 9 (microvascular endothelial differentiation gene-1)	DNAJB9	4189	ENSG00000128590	previously assigned to chr.14 by FISH		Dnajb9 (MGI:1351618)
chr7	110662644	111562530	7q31	7q31.1	605977	IMMP2L, IMP2	Inner mitochondrial membrane peptidase, subunit 2, S. cerevisiae, homolog of	IMMP2L	83943	ENSG00000184903			Immp2l (MGI:2135611)
chr7	111726107	112206406	7q31	7q31.1	607679	DOCK4, KIAA0716	Dedicator of cytokinesis 4	DOCK4	9732	ENSG00000128512			Dock4 (MGI:1918006)
chr7	112206587	112343933	7q31.1	7q31.1	605465	ZNF277	Zinc finger protein-277	ZNF277	11179	ENSG00000198839			Zfp277 (MGI:1890393)
chr7	112423143	112477939	7q22-q31	7q31.1	603502	IFRD1	Interferon-related developmental regulator 1	IFRD1	3475	ENSG00000006652			Ifrd1 (MGI:1316717)
chr7	112819146	112939876	7q31.1	7q31.1	617855	BMT2, SAMTOR, C7orf60	Base methyltransferase of 25S rRNA 2, S. cerevisiae, homolog of	BMT2	154743	ENSG00000164603			Bmt2 (MGI:2141466)
chr7	113080412	113087777	7q31	7q31.1	605188	GPR85, SREB2	G protein-coupled receptor-85	GPR85	54329	ENSG00000164604			Gpr85 (MGI:1927851)
chr7	113876826	113919093	7q11.23-q21.11	7q31.1	600917	PPP1R3A, PPP1R3	Protein phosphatase 1, regulatory subunit 3A	PPP1R3A	5506	ENSG00000154415		Insulin resistance, severe, digenic, 125853 (3), Autosomal dominant	Ppp1r3a (MGI:2153588)
chr7	114086309	114693771	7q31	7q31.1	605317	FOXP2, SPCH1, TNRC10, CAGH44	Forkhead box P2	FOXP2	93986	ENSG00000128573		Speech-language disorder-1, 602081 (3), Autosomal dominant	
chr7	114922153	115019915	7q31.1	7q31.1-q31.2	614511	MDFIC, HIC	MYOD family inhibitor domain-containing protein	MDFIC	29969	ENSG00000135272			Mdfic (MGI:104611)
chr7	115935147	116159890	7q31.2	7q31.2	604732	TFEC, TFECL	Transcription factor EC	TFEC	22797	ENSG00000105967			Tfec (MGI:1333760)
chr7	116210492	116258785	7q31.2	7q31.2	606085	TES	Testin	TES	26136	ENSG00000135269			Tes (MGI:105081)
chr7	116499600	116508540	7q31.1	7q31.2	601048	CAV2	Caveolin-2	CAV2	858	ENSG00000105971			Cav2 (MGI:107571)
chr7	116524784	116561184	7q31.1	7q31.2	601047	CAV1, BSCL3, CGL3, PPH3, LCCNS	Caveolin-1	CAV1	857	ENSG00000105974	mutation identified in 1 CGL3 family; mutation identified in 1 LCCNS family	?Lipodystrophy, congenital generalized, type 3, 612526 (3); ?Partial lipodystrophy, congenital cataracts, and neurodegeneration syndrome, 606721 (3), Autosomal dominant; Pulmonary hypertension, primary, 3, 615343 (3), Autosomal dominant	Cav1 (MGI:102709)
chr7	116672358	116798385	7q31	7q31.2	164860	MET, DFNB97, OSFD	Oncogene MET	MET	4233	ENSG00000105976	mutation identified in 1 DFNB97 family	?Deafness, autosomal recessive 97, 616705 (3), Autosomal recessive; Hepatocellular carcinoma, childhood type, somatic, 114550 (3); {Osteofibrous dysplasia, susceptibility to}, 607278 (3), Autosomal dominant; Renal cell carcinoma, papillary, 1, familial and somatic, 605074 (3)	Met (MGI:96969)
chr7	116862508	116919260	7q31.2-q31.3	7q31.2	601571	CAPZA2, CAPPA2	Capping protein (actin filament) muscle Z-line, alpha 2	CAPZA2	830	ENSG00000198898			Capza2 (MGI:106222)
chr7	116953326	117230022	7q31.1	7q31.2	600833	ST7, TSG7, RAY1, FAM4A1	Suppressor of tumorigenicity 7 (breast)	ST7	7982	ENSG00000004866			St7 (MGI:1927450)
chr7	117276630	117323288	7q31	7q31.2	147870	WNT2, INT1L1	Wingless-type MMTV integration site family, member 2	WNT2	7472	ENSG00000105989	isolated by CMGT with MET		Wnt2 (MGI:98954)
chr7	117363221	117427522	7q31.3	7q31.2	605797	ASZ1, ALP1, ANKL1, GASZ	Ankyrin repeat, SAM, and basic leucine zipper domain-containing 1	ASZ1	136991	ENSG00000154438			Asz1 (MGI:1921318)
chr7	117479962	117668664	7q31.2	7q31.2	602421	CFTR, ABCC7, CF, MRP7	Cystic fibrosis transmembrane conductance regulator (ATP-binding cassette, subfamily C, member 7)	CFTR	1080	ENSG00000001626	distal and 5' to MET	{Bronchiectasis with or without elevated sweat chloride 1, modifier of}, 211400 (3), Autosomal dominant; Congenital bilateral absence of vas deferens, 277180 (3), Autosomal recessive; Cystic fibrosis, 219700 (3), Autosomal recessive; {Hypertrypsinemia, neonatal} (3); {Pancreatitis, hereditary}, 167800 (3), Autosomal dominant; Sweat chloride elevation without CF (3)	Cftr (MGI:88388)
chr7	117700000	127500000	7q31.3		606256	STQTL2	Stature quantitative trait locus 2		192143		max lod at D7S195	{Stature QTL 2}, 606256 (2)	
chr7	117710647	117873817	7q31	7q31.31	609772	CTTNBP2, CORTBP2, KIAA1758	Cortactin-binding protein 2	CTTNBP2	83992	ENSG00000077063			Cttnbp2 (MGI:1353467)
chr7	118184031	118204038	7q31.31	7q31.31	607288	LSM8	LSM8, S. cerevisiae, homolog of, U6 small nuclear RNA associated	LSM8	51691	ENSG00000128534			Lsm8 (MGI:1923772)
chr7	118224657	118242730	7q31.3	7q31.31	610731	ANKRD7	Ankyrin repeat domain-containing protein 7	ANKRD7	56311	ENSG00000106013			Ankrd7 (MGI:1922446)
chr7	120273637	120750332	7q31	7q31.31	605410	KCND2, KIAA1044	Potassium voltage-gated channel, Shal-related subfamily, member 2	KCND2	3751	ENSG00000184408			Kcnd2 (MGI:102663)
chr7	120787319	120858336	7q31	7q31.31	613138	TSPAN12, NET2, EVR5	Tetraspanin 12	TSPAN12	23554	ENSG00000106025		Exudative vitreoretinopathy 5, 613310 (3), Autosomal dominant	Tspan12 (MGI:1889818)
chr7	120950748	120975656	7q31	7q31.31	607493	ING3, P47ING3	Inhibitor of growth family, member 3	ING3	54556	ENSG00000071243			Ing3 (MGI:1919027)
chr7	121325366	121341103	7q31.3	7q31.31	606267	WNT16	Wingless-type MMTV integration site family, member 16	WNT16	51384	ENSG00000002745			Wnt16 (MGI:2136018)
chr7	121348850	121396368	7q31.3	7q31.31	608618	FAM3C	Family with sequence similarity 3, member C	FAM3C	10447	ENSG00000196937			Fam3c (MGI:107892)
chr7	121873104	122062035	7q31.3	7q31.32	176891	PTPRZ1, PTP18	Protein-tyrosine phosphatase, receptor-type, zeta-1, polypeptide	PTPRZ1	5803	ENSG00000106278		{H. pylori infection, susceptibility to}, 600263 (1)	Ptprz1 (MGI:97816)
chr7	122073543	122144289	7q31.3	7q31.32	605113	AASS	Alpha-aminoadipic semialdehyde synthase	AASS	10157	ENSG00000008311		Hyperlysinemia, 238700 (3), Autosomal recessive; Saccharopinuria, 268700 (1), Autosomal recessive	Aass (MGI:1353573)
chr7	122300938	122311854	7q31.32	7q31.32	613301	FEZF1, FEZ, ZNF312B, HH22	FEZ family zinc finger protein 1	FEZF1	389549	ENSG00000128610		Hypogonadotropic hypogonadism 22, with or without anosmia, 616030 (3), Autosomal recessive	Fezf1 (MGI:1920441)
chr7	122318423	122886758	7q31.3	7q31.32	609978	CADPS2, KIAA1591	Calcium-dependent activator protein for secretion 2	CADPS2	93664	ENSG00000081803			Cadps2 (MGI:2443963)
chr7	122994704	122995699	7q31	7q31.32	604867	TAS2R16, T2R16	Taste receptor type 2, member 16	TAS2R16	50833	ENSG00000128519		{Alcohol dependence, susceptibility to}, 103780 (3), Multifactorial; [Beta-glycopyranoside tasting] (3)	Tas2r118 (MGI:2681247)
chr7	123113489	123201835	7q31-q32	7q31.32	606193	SLC13A1, NAS1	Solute carrier family 13 (sodium/sulfate symporters), member 1	SLC13A1	6561	ENSG00000081800			Slc13a1 (MGI:1859937)
chr7	123536996	123601650	7q32	7q31.32	601677	NDUFA5, UQOR13	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 5 (13kD, B13)	NDUFA5	4698	ENSG00000128609			Ndufa5 (MGI:1915452)
chr7	123655806	123664289	7q31.32	7q31.32	608006	LMOD2, CLMOD	Leiomodin 2	LMOD2	442721	ENSG00000170807			Lmod2 (MGI:2135672)
chr7	123681926	123749070	7q31.3	7q31.32	605056	WASL, NWASP	Wiskott-Aldrich syndrome gene-like	WASL	8976	ENSG00000106299			
chr7	123763707	123877480	7q31	7q31.32	604510	HYAL4	Hyaluronoglucosaminidase 4	HYAL4	23553	ENSG00000106302			Hyal4 (MGI:1924292)
chr7	123925231	123971409	7q31	7q31.32	600930	SPAM1	Sperm adhesion molecule 1 (PH-20 hyaluronidase, zona pellucida binding)	SPAM1	6677	ENSG00000106304			Hyal5 (MGI:1921718)
chr7	124743884	124766107	7q31	7q31.33	602583	GPR37	G protein-coupled receptor-37	GPR37	2861	ENSG00000170775			Gpr37 (MGI:1313297)
chr7	124822385	124929982	7q31.33	7q31.33	606478	POT1, CMM10, GLM9	Protection of telomeres 1	POT1	25913	ENSG00000128513		{Glioma susceptibility 9}, 616568 (3), Autosomal dominant; {Melanoma, cutaneous malignant, susceptibility to, 10}, 615848 (3), Autosomal dominant	Pot1a (MGI:2141503)
chr7	126438597	127253292	7q31.3-q32.1	7q31.33	601116	GRM8	Glutamate receptor, metabotropic-8	GRM8	2918	ENSG00000179603			Grm8 (MGI:1351345)
chr7	127500000	132900000	7q32		613063	BCC6	Basal cell carcinoma, susceptibility to, 6		100307123		associated with rs157935	{Basal cell carcinoma, susceptibility to, 6}, 613063 (2)	
chr7	127500000	132900000	7q32		600676	CATR1	CATR tumorigenic conversion 1	CATR1	856				
chr7	127500000	132900000	7q32		614220	PBC4	Biliary cirrhosis, primary, 4		100689215		associated with rs10488631	Biliary cirrhosis, primary, 4, 614220 (2)	
chr7	127500000	132900000	7q32		609573	PPR3	Photoparoxysmal response 3		619471		max lod at D7S1804	Photoparoxysmal response 3, 609573 (2)	
chr7	127500000	138500000	7q32-q33		613909	SCA32	Spinocerebellar ataxia 32	SCA32	100653368		between rs3847110 and rs2241728	Spinocerebellar ataxia 32, 613909 (2), Autosomal dominant	
chr7	127580627	127585599	7q32.1	7q32.1	607418	GCC1, GCC88	GRIP and coiled-coil domains-containing protein 1	GCC1	79571	ENSG00000179562			Gcc1 (MGI:1921625)
chr7	127588351	127591704	7q31.3	7q32.1	103188	ARF5	ADP-ribosylation factor 5	ARF5	381	ENSG00000004059			Arf5 (MGI:99434)
chr7	127593634	127601796	7q31.3	7q32.1	615800	FSCN3	Fascin actin-bundling protein 3, testicular	FSCN3	29999	ENSG00000106328			Fscn3 (MGI:1890386)
chr7	127610291	127618191	7q32	7q32.1	167413	PAX4, MODY9, KPD	Paired box homeotic gene-4	PAX4	5078	ENSG00000106331		{Diabetes mellitus, ketosis-prone, susceptibility to}, 612227 (3), Autosomal recessive, Autosomal dominant; Diabetes mellitus, type 2, 125853 (3), Autosomal dominant; Maturity-onset diabetes of the young, type IX, 612225 (3)	Pax4 (MGI:97488)
chr7	127651988	128092608	7q31.3	7q32.1	602181	P100, SND1	EBNA-2 coactivator p100	SND1	27044	ENSG00000197157			Snd1 (MGI:1929266)
chr7	128027070	128032106	7q32.1	7q32.1	610486	LRRC4	Leucine-rich repeat-containing protein 4	LRRC4	64101	ENSG00000128594			Lrrc4 (MGI:2182081)
chr7	128241200	128257628	7q31.3	7q32.1	164160	LEP, OB, LEPD	Leptin (murine obesity homolog)	LEP	3952	ENSG00000174697	in mouse cen-Cola-2-Met-ob-Cpa-Tcrb-tel	Obesity, morbid, due to leptin deficiency, 614962 (3), Autosomal recessive	Lep (MGI:104663)
chr7	128304172	128343914	7q32.1	7q32.1	612074	RBM28, ANES	RNA-binding motif protein 28	RBM28	55131	ENSG00000106344	mutation identified in 1 ANES family	?Alopecia, neurologic defects, and endocrinopathy syndrome, 612079 (3), Autosomal recessive	Rbm28 (MGI:2655711)
chr7	128392276	128409988	7q31.3-q32	7q32.1	146690	IMPDH1, RP10, LCA11	Inosine-5'-monophosphate dehydrogenase, type I	IMPDH1	3614	ENSG00000106348	pseudogene on 16p13.13	Leber congenital amaurosis 11, 613837 (3); Retinitis pigmentosa 10, 180105 (3), Autosomal dominant	Impdh1 (MGI:96567)
chr7	128455829	128458417	7q32.1	7q32.1	617905	HILPDA, HIG2	Hypoxia-inducible lipid droplet-associated protein	HILPDA	29923	ENSG00000135245			Hilpda (MGI:1916823)
chr7	128739291	128773422	7q32	7q32.1	603420	CALU	Calumenin	CALU	813	ENSG00000128595			Calu (MGI:1097158)
chr7	128772488	128775789	7q31.3-q32	7q32.1	613522	OPN1SW, BCP, CBT	Blue cone pigment (opsin 1, short-wave-sensitive)	OPN1SW	611	ENSG00000128617		Colorblindness, tritan, 190900 (3), Autosomal dominant	Opn1sw (MGI:99438)
chr7	128790761	128822132	7q31-q32	7q32.1	611902	CCDC136, NAG6, KIAA1793	Coiled-coil domain-containing protein 136	CCDC136	64753	ENSG00000128596			Ccdc136 (MGI:1918128)
chr7	128830428	128859273	7q32	7q32.1	102565	FLNC, FLN2, ABPA, ABPL, MFM5, MPD4, CMH26, RCM5	Filamin C (actin-binding protein-280)	FLNC	2318	ENSG00000128591		Cardiomyopathy, familial hypertrophic, 26 (3); Cardiomyopathy, familial restrictive 5, 617047 (3), Autosomal dominant; Myopathy, distal, 4, 614065 (3), Autosomal dominant; Myopathy, myofibrillar, 5, 609524 (3), Autosomal dominant	Flnc (MGI:95557)
chr7	128870644	128910718	7q32.3	7q32.1	609344	KCP	Kielin/chordin-like protein	KCP	375616	ENSG00000135253			Kcp (MGI:2141640)
chr7	128937031	128950041	7q32	7q32.1	607218	IRF5, IBD14, SLEB10	Interferon regulatory factor 5	IRF5	3663	ENSG00000128604		{Inflammatory bowel disease 14}, 612245 (3); {Systemic lupus erythematosus, susceptibility to, 10}, 612251 (3)	Irf5 (MGI:1350924)
chr7	128954179	129055172	7q32.1	7q32.1	610032	TNPO3, TRNSR, LGMD1F	Transportin 3	TNPO3	23534	ENSG00000064419		Muscular dystrophy, limb-girdle, type 1F, 608423 (3), Autosomal dominant	Tnpo3 (MGI:1196412)
chr7	129144715	129169693	7q32.1	7q32.1	610120	TSPAN33, PEN	Tetraspanin 33	TSPAN33	340348	ENSG00000158457			Tspan33 (MGI:1919012)
chr7	129188871	129213547	7q31-q32	7q32.1	601500	SMOH, SMO, CRJS	Smoothened, Drosophila, homolog of	SMO	6608	ENSG00000128602		Basal cell carcinoma, somatic, 605462 (3); Curry-Jones syndrome, somatic mosaic, 601707 (3)	Smo (MGI:108075)
chr7	129225013	129430210	7q32.1	7q32.1	616520	AHCYL2	Adenosylhomocysteinase-like 2	AHCYL2	23382	ENSG00000158467			Ahcyl2 (MGI:1921590)
chr7	129434432	129488398	7q32.1	7q32.1	617919	STRIP2, FAR11B, FAM40B	Striatin-interacting protein 2	STRIP2	57464	ENSG00000128578			Strip2 (MGI:2444363)
chr7	129600000	152800000	7q32.2-q36.1		146450	HYSP3	Hypospadias 3, autosomal		100689211		between D7S2519 and D7S2442.	Hypospadias 3, autosomal, 146450 (2), Autosomal dominant, Multifactorial	
chr7	129611701	129757081	7q32	7q32.2	600879	NRF1	Nuclear respiratory factor 1	NRF1	4899	ENSG00000106459	earlier location = 7q31		Nrf1 (MGI:1332235)
chr7	129770382	129770491	7q32.2	7q32.2	611607	MIR182, MIRN182	Micro RNA 182	MIR182	406958				
chr7	129774691	129774768	7q32.2	7q32.2	611606	MIR96, MIRN96, DFNA50	Micro RNA 96	MIR96	407053			Deafness, autosomal dominant 50, 613074 (3), Autosomal dominant	
chr7	129774904	129775013	7q32.2	7q32.2	611608	MIR183, MIRN183	Micro RNA 183	MIR183	406959				
chr7	129830731	129952959	7q32	7q32.2	601082	UBE2H, UBCH2, UBC8	Ubiquitin-conjugating enzyme E2H (homologous to yeast UBC8)	UBE2H	7328	ENSG00000186591			Ube2h (MGI:104632)
chr7	130070508	130135719	7q32.2	7q32.2	615152	KLHDC10, SLIM	KELCH domain-containing protein 10	KLHDC10	23008	ENSG00000128607			Klhdc10 (MGI:1924038)
chr7	130266862	130289797	7q32	7q32.2	600688	CPA2	Carboxypeptidase A2, pancreatic	CPA2	1358	ENSG00000158516			Cpa2 (MGI:3617840)
chr7	130293133	130324179	7q32	7q32.2	607635	CPA4, CPA3	Carboxypeptidase A4	CPA4	51200	ENSG00000128510			Cpa4 (MGI:1919041)
chr7	130380370	130388107	7q32-qter	7q32.2	114850	CPA1	Carboxypeptidase A	CPA1	1357	ENSG00000091704	both CPA and TRY1 = serine proteases		Cpa1 (MGI:88478)
chr7	130393770	130441209	7q32	7q32.2	610523	CEP41, TSGA14, JBTS15	Centrosomal protein, 41kD	CEP41	95681	ENSG00000106477		Joubert syndrome 15, 614464 (3), Autosomal recessive	Cep41 (MGI:1891414)
chr7	130486174	130506296	7q32	7q32.2	601029	MEST, PEG1	Mesoderm specific transcript, mouse, homolog of	MEST	4232	ENSG00000106484	imprinted maternally		Mest (MGI:96968)
chr7	130506237	130668757	7q32	7q32.2	604355	COPG2	Coatomer protein complex, subunit gamma-2	COPG2	26958	ENSG00000158623			Copg2 (MGI:1858683)
chr7	130543452	130546899	7q32	7q32.2	610581	COPG2IT1, CIT1	Coatomer protein complex, subunit gamma-2, intronic transcript 1	COPG2IT1	53844				
chr7	130732553	130734032	7q32.2	7q32.2	609393	LKF14, BTEB5	Kruppel-like factor 14	KLF14	136259	ENSG00000266265			Klf14 (MGI:3577024)
chr7	130800000	132900000	7q32.3		606641	BMIQ1	Body mass index quantitative trait locus 1	BMIQ1	170815		max lod at D7S1804	[Body mass index QTL1], 606641 (2)	
chr7	130876746	130876809	7q32.3	7q32.3	610782	MIR29A, MIRN29A	Micro RNA 29A	MIR29A	407021				
chr7	130877458	130877538	7q32.3	7q32.3	610783	MIR29B1, MIRN29B1	Micro RNA 29B1	MIR29B1	407024				
chr7	131110095	131496638	7q32	7q32.3	605623	MKLN1	Muskelin 1	MKLN1	4289	ENSG00000128585			Mkln1 (MGI:1351638)
chr7	131500261	131556616	7q32-q33	7q32.3	602632	PODXL, PCLP	Podocalyxin-like	PODXL	5420	ENSG00000128567			
chr7	132123331	132648687	7q32.3	7q32.3	604280	PLXNA4	Plexin A4	PLXNA4	91584	ENSG00000221866			Plxna4 (MGI:2179061)
chr7	132784861	133082157	7q32.3-q33	7q32-q33	613748	CHCHD3	Coiled-coil-helix-coiled-coil-helix domain-containing protein 3	CHCHD3	54927	ENSG00000106554			Chchd3 (MGI:1913325)
chr7	133253066	134067136	7q31	7q33	608185	EXOC4, SEC8, KIAA1699	Exocyst complex component 4	EXOC4	60412	ENSG00000131558			Exoc4 (MGI:1096376)
chr7	134127351	134282474	7q33	7q33	616478	LRGUK	Leucine-rich repeats- and guanylate kinase domain-containing protein	LRGUK	136332	ENSG00000155530			Lrguk (MGI:1921604)
chr7	134289336	134320306	7q33	7q33	610923	SLC35B4	Solute carrier family 35 (UDP-xylose/UDP-N-acetylglucosamine transporter), member B4	SLC35B4	84912	ENSG00000205060			Slc35b4 (MGI:1931249)
chr7	134442349	134459238	7q35	7q33	103880	AKR1B1, ALDR1	Aldo-keto reductase family 1, member B1	AKR1B1	231	ENSG00000085662			Akr1b3 (MGI:1353494)
chr7	134527591	134541413	7q33	7q33	604707	AKR1B10, ARL1	Aldo-keto reductase family 1, member B10	AKR1B10	57016	ENSG00000198074			Akr1b8 (MGI:107673)
chr7	134549096	134579842	7q33	7q33	616336	AKR1B15, AKR1B10L, AKR1R1B7	Aldo-keto reductase family 1, member B15	AKR1B15	441282	ENSG00000227471			
chr7	134646778	134679815	7q31-q34	7q33	613896	BPGM	2,3-bisphosphoglycerate mutase	BPGM	669	ENSG00000172331		Erythrocytosis due to bisphosphoglycerate mutase deficiency, 222800 (3), Autosomal recessive	Bpgm (MGI:1098242)
chr7	134779412	134970728	7q33	7q33	114213	CALD1, CDM	Caldesmon-1	CALD1	800	ENSG00000122786			
chr7	134986138	135135781	7q33	7q33	617346	AGBL3, CCP3	ATP/GTP-binding protein-like 3	AGBL3	340351	ENSG00000146856			Agbl3 (MGI:1923473)
chr7	135092302	135170825	7q33	7q33	616980	C7orf49, MRI	Chromosome 7 open reading frame 49	CYREN	78996	ENSG00000122783			3110062M04Rik (MGI:1925662)
chr7	135183837	135211563	7q33	7q33	616303	WDR91, SORF1	WD repeat-containing protein 91	WDR91	29062	ENSG00000105875			Wdr91 (MGI:2141558)
chr7	135231978	135258660	7q31	7q33	609987	STRA8	Stimulated by retinoic acid 8, mouse, homolog of	STRA8	346673	ENSG00000146857			Stra8 (MGI:107917)
chr7	135361794	135510126	7q22-qter	7q33	604911	CNOT4, NOT4	CCR4-NOT transcription complex, subunit 4	CNOT4	4850	ENSG00000080802			Cnot4 (MGI:1859026)
chr7	135557913	135648752	7q33	7q33	614352	NUP205, C7orf14, KIAA0225, NPHS13	Nucleoporin, 205kD	NUP205	23165	ENSG00000155561	mutation identified in 1 NPHS13 family	?Nephrotic syndrome, type 13, 616893 (3)	Nup205 (MGI:2141625)
chr7	135681236	135728203	7q33	7q33	604309	SLC13A4, SUT1	Solute carrier family 13 (sodium/sulfate symporters), member 4 (sulfate transporter 1)	SLC13A4	26266	ENSG00000164707			Slc13a4 (MGI:2442367)
chr7	135926754	135977455	7q33	7q33	611050	LUZP6, MPD6	Leucine zipper protein 6	LUZP6	767558	ENSG00000267697			
chr7	135926754	135977455	7q33-q35	7q33	606484	MTPN	Myotrophin	MTPN	136319	ENSG00000105887			Mtpn (MGI:99445)
chr7	136868636	137020254	7q35-q36	7q33	118493	CHRM2	Cholinergic receptor, muscarinic, 2	CHRM2	1129	ENSG00000181072			Chrm2 (MGI:88397)
chr7	136903166	136903293	7q33	7q33	616972	MIR490	Micro RNA 490	MIR490	574443				
chr7	137227340	137343989	7q33	7q33	162095	PTN, NEGF1	Pleiotrophin (heparin binding growth factor 8, neurite growth-promoting factor 1)	PTN	5764	ENSG00000105894			Ptn (MGI:97804)
chr7	137384400	137846863	7q32.3-q33	7q33	604072	DGKI	Diacylglycerol kinase, iota, 130-kD	DGKI	9162	ENSG00000157680			Dgki (MGI:2443430)
chr7	137874978	138002100	7q33	7q33	608834	CREB3L2, BBF2H7	cAMP response element-binding protein 3-like 2	CREB3L2	64764	ENSG00000182158			Creb3l2 (MGI:2442695)
chr7	138076431	138118303	7q32-q33	7q33	604741	AKR1D1, SRD5B1, CBAS2	Bile acid synthesis defect, congenital, 2	AKR1D1	6718	ENSG00000122787		Bile acid synthesis defect, congenital, 2, 235555 (3), Autosomal recessive	Akr1d1 (MGI:2384785)
chr7	138460333	138585587	7q32-q34	7q33-q34	603406	TRIM24, TIF1, TIF1A, PTC6	Tripartite motif-containing protein 24 (Transcriptional intermediary factor 1)	TRIM24	8805	ENSG00000122779	fused with RET to form PTC6		Trim24 (MGI:109275)
chr7	138500000	159345973	7q34-q36		603098	DFNB13	Deafness, autosomal recessive 13	DFNB13	1705			Deafness, autosomal recessive 13, 603098 (2), Autosomal recessive	
chr7	138500000	159345973	7q34-q36		182960	DHMN1	Neuronopathy, distal hereditary motor, type I				between D7S2513 and D7S637	Neuronopathy, distal hereditary motor, type I, 182960 (2), Autosomal dominant	
chr7	138500000	159345973	7q34-q36		605727	OTSC2	Otosclerosis 2	OTSC2	93999			Otosclerosis 2, 605727 (2)	
chr7	138500000	143400000	7q34		615449	TRBJ@	T-cell receptor beta chain joining gene cluster						
chr7	138500000	143400000	7q34		615446	TRBV@	T-cell receptor beta chain variable gene cluster						
chr7	138591688	138701546	7q34	7q34	611700	SVOPL	SV2-related protein-like	SVOPL	136306	ENSG00000157703			Svopl (MGI:2444335)
chr7	138706293	138799838	7q33-q34	7q34	605239	ATP6V0A4, ATP6N1B, VPP2, RTA1C, RTADR	ATPase, H+ transporting, lysosomal V0 subunit a isoform 4	ATP6V0A4	50617	ENSG00000105929		Renal tubular acidosis, distal, autosomal recessive, 602722 (3)	Atp6v0a4 (MGI:2153480)
chr7	138831376	138981625	7q34	7q34	613344	KIAA1549	KIAA1549 gene	KIAA1549	57670	ENSG00000122778			D630045J12Rik (MGI:2669829)
chr7	139043518	139109718	7q34	7q34	607312	ZC3HAV1, ZAP, FLJ13288, FLB6421	Zinc finger CCCH domain-containing antiviral protein 1	ZC3HAV1	56829	ENSG00000105939			Zc3hav1 (MGI:1926031)
chr7	139133743	139191985	7q34	7q34	617453	TTC26, IFT56	Tetratricopeptide repeat domain-containing protein 26	TTC26	79989	ENSG00000105948			Ttc26 (MGI:2444853)
chr7	139228407	139329420	7q34	7q34	613841	UBN2	Ubinuclein 2	UBN2	254048	ENSG00000157741			Ubn2 (MGI:2444236)
chr7	139340358	139423456	7q34	7q34	613056	LUC7L2	Luc7, S. cerevisiae, homolog of, 2	LUC7L2	51631	ENSG00000146963			Luc7l2 (MGI:2183260)
chr7	139561569	139777893	7q33-q34	7q34	606868	HIPK2	Homeodomain-interacting protein kinase 2	HIPK2	28996	ENSG00000064393			Hipk2 (MGI:1314872)
chr7	139778247	140020324	7q34	7q34	274180	TBXAS1, GHOSAL, CYP5, BDPLT14	Thromboxane A synthase 1, platelet	TBXAS1	6916	ENSG00000059377		Ghosal hematodiaphyseal syndrome, 231095 (3), Autosomal recessive; ?Thromboxane synthase deficiency, 614158 (1), Autosomal dominant	Tbxas1 (MGI:98497)
chr7	140023743	140063720	7q34	7q34	612481	PARP12, ZC3HDC1, FLJ22693	Poly(ADP-ribose) polymerase family, member 12	PARP12	64761	ENSG00000059378			Parp12 (MGI:2143990)
chr7	140719326	140924927	7q34	7q34	164757	BRAF, NS7	Murine sarcoma viral (v-raf) oncogene homolog B1	BRAF	673	ENSG00000157764	pseudogene BRAF2 on Xq13 or 7q	Adenocarcinoma of lung, somatic, 211980 (3); Cardiofaciocutaneous syndrome, 115150 (3), Autosomal dominant; Colorectal cancer, somatic (3); LEOPARD syndrome 3, 613707 (3), Autosomal dominant; Melanoma, malignant, somatic (3); Nonsmall cell lung cancer, somatic (3); Noonan syndrome 7, 613706 (3), Autosomal dominant	Braf (MGI:88190)
chr7	141006160	141014980	7q32-q34	7q34	611993	MRPS33	Mitochondrial ribosomal protein S33	MRPS33	51650	ENSG00000090263	4 pseudogenes		Mrps33 (MGI:1338046)
chr7	141551277	141662152	7q34	7q34	610345	AGK, MULK, MTDPS10, CATC5, CTRCT38	Acylglycerol kinase	AGK	55750	ENSG00000006530		Cataract 38, autosomal recessive, 614691 (3), Autosomal recessive; Sengers syndrome, 212350 (3), Autosomal recessive	Agk (MGI:1917173)
chr7	141708352	141731270	7q34	7q34	614084	WEE2, WEE1B	Wee1, S. pombe, homolog of, 2	WEE2	494551	ENSG00000214102			Wee2 (MGI:3027899)
chr7	141738320	141750487	7q34	7q34	600439	SSBP1, SSBP	Single-stranded DNA-binding protein 1	SSBP1	6742	ENSG00000106028			Ssbp1 (MGI:1920040)
chr7	141764096	141765196	7q31.3-q32	7q34	604868	TAS2R3, T2R3	Taste receptor type 2, member 3	TAS2R3	50831	ENSG00000127362			Tas2r137 (MGI:3606604)
chr7	141778488	141779387	7q31.3-q32	7q34	604869	TAS2R4, T2R4	Taste receptor type 2, member 4	TAS2R4	50832	ENSG00000127364			Tas2r108 (MGI:2681210)
chr7	141790216	141791365	7q31.3-q32	7q34	605062	TAS2R5, T2R5	Taste receptor type 2, member 5	TAS2R5	54429	ENSG00000127366			
chr7	141927355	141947008	7q33	7q34	604987	CLEC5A, CLECSF5, MDL1	C-type lectin domain family 5, member A	CLEC5A	23601	ENSG00000258227			Clec5a (MGI:1345151)
chr7	141972630	141973772	7q34	7q34	607751	TAS2R38, T2R61, PTC	Taste receptor, type 2, member 38	TAS2R38	5726	ENSG00000257138		[Phenylthiocarbamide tasting], 171200 (3), Autosomal dominant	Tas2r138 (MGI:2681306)
chr7	141986516	142106746	7q34	7q34	154360	MGAM, MGA	Maltase-glucoamylase	MGAM	8972	ENSG00000257335	similar to EST GS1365		Mgam (MGI:1203495)
chr7	142740234	142753075	7q35	7q34	276000	PRSS1, TRY1	Protease, serine, 1 (trypsin 1)	PRSS1	5644	ENSG00000204983	8 trypsinogen genes embedded in TCRB locus	Pancreatitis, hereditary, 167800 (3), Autosomal dominant; Trypsinogen deficiency, 614044 (1), Autosomal recessive	Try10 (MGI:3687012)
chr7	142770942	142774563	7q35	7q34	601564	PRSS2, TRY2	Protease, serine, 2 (trypsin 2)	PRSS2	5645	ENSG00000275896		{Pancreatitis, chronic, protection against}, 167800 (3), Autosomal dominant	Prss2 (MGI:102759)
chr7	142786212	142786223	7q34	7q34	615447	TRBD1	T-cell receptor beta chain diversity gene 1	TRBD1	28637				
chr7	142791693	142793140	7q34	7q34	186930	TRBC1	T-cell receptor beta chain constant region 1	TRBC1	28639				
chr7	142795704	142795719	7q34	7q34	615448	TRBD2	T-cell receptor beta chain diversity gene 2	TRBD2	28636				
chr7	142801040	142802528	7q34	7q34	615445	TRBC2	T-cell receptor beta chain constant region 2	TRBC2	28638				
chr7	142854638	142871092	7q33-q35	7q34	602757	EPHB6, HEP	Ephrin receptor EPHB6	EPHB6	2051	ENSG00000106123			Ephb6 (MGI:1096338)
chr7	142871202	142885744	7q33-q34	7q34	606680	TRPV6, ECAC2, CAT1, CATL	Transient receptor potential cation channel, subfamily V, member 6	TRPV6	55503	ENSG00000165125			Trpv6 (MGI:1927259)
chr7	142908100	142933722	7q35	7q34	606679	TRPV5, ECAC1, CAT2	Transient receptor potential cation channel, subfamily V, member 5	TRPV5	56302	ENSG00000127412			Trpv5 (MGI:2429764)
chr7	142941113	142962415	7q33	7q34	613883	KEL	Kell blood group	KEL	3792	ENSG00000197993		[Blood group, Kell], 110900 (3)	Kel (MGI:1346053)
chr7	143132080	143139740	7q32-q36	7q34	176720	PIP	Prolactin-inducible protein	PIP	5304	ENSG00000159763			Pip (MGI:102696)
chr7	143222036	143223078	7q34	7q34	613964	TAS2R40, T2R40	Taste receptor, type 2, member 40	TAS2R40	259286	ENSG00000221937			Tas2r144 (MGI:2681312)
chr7	143263428	143269128	7q34	7q34	602321	GSTK1	Glutathione S-transferase, kappa-1	GSTK1	373156	ENSG00000197448			Gstk1 (MGI:1923513)
chr7	143284898	143288048	7q34	7q34	616524	TMEM139	Transmembrane protein 139	TMEM139	135932	ENSG00000178826			Tmem139 (MGI:1924444)
chr7	143288214	143307695	7q35	7q34	600639	CASP2, NEDD2, ICH1	Caspase 2, apoptosis-related cysteine protease (neural precursor cell expressed, developmentally down-regulated 2)	CASP2	835	ENSG00000106144			Casp2 (MGI:97295)
chr7	143316125	143352007	7q35	7q34	118425	CLCN1	Chloride channel-1, skeletal muscle	CLCN1	1180	ENSG00000188037		Myotonia congenita, dominant, 160800 (3), Autosomal dominant; Myotonia congenita, recessive, 255700 (3), Autosomal recessive; Myotonia levior, recessive (3)	Clcn1 (MGI:88417)
chr7	143381226	143391110	7q34-q35	7q34	602002	ZYX	Zyxin	ZYX	7791	ENSG00000159840			Zyx (MGI:103072)
chr7	143390812	143408891	7q32-q36	7q34-q35	179610	EPHA1, EPHT1	eph tyrosine kinase 1 (erythropoietin-producing hepatoma amplified sequence; oncogene EPH; ephrin receptor EphA1)	EPHA1	2041	ENSG00000146904			Epha1 (MGI:107381)
chr7	143400000	159345973	7q35-q36		157570	D7S437, MS3315	Minisatellite 33.15						
chr7	143400000	159345973	7q35-q36		600510	GPDS1, PDS1	Glaucoma-related pigment dispersion syndrome-1	GPDS1	7986			Pigment dispersion syndrome, 600510 (2), Autosomal dominant	
chr7	143400000	159345973	7q35-q36		612514	SLI4	Specific language impairment 4		100233227		associated with rs1723629	{Specific language impairment 4}, 612514 (2)	
chr7	143443452	143444408	7q35	7q35	613968	TAS2R60, T2R60	Taste receptor, type 2, member 60	TAS2R60	338398	ENSG00000185899			Tas2r135 (MGI:2681302)
chr7	143477872	143478795	7q35	7q35	613965	TAS2R41, T2R59	Taste receptor, type 2, member 41	TAS2R41	259287	ENSG00000221855			Tas2r126 (MGI:2681273)
chr7	143620951	143730085	7q35	7q35	616252	TCAF2, FAM115C, FAM139A	TRPM8 channel-associated factor 2	TCAF2	285966	ENSG00000170379			Tcaf2 (MGI:2385258)
chr7	143851367	143902197	7q35	7q35	616251	TCAF1, FAM115A, KIAA0738	TRPM8 channel-associated factor 1	TCAF1	9747	ENSG00000198420			Tcaf1 (MGI:1914665)
chr7	143907151	143988539	7q35	7q35	608497	OR2F1, OLF3	Olfactory receptor, family 2, subfamily F, member 1	OR2F1	26211	ENSG00000213215			Olfr453 (MGI:3030287)
chr7	144355395	144380631	7q33-q35	7q35	600888	ARHGEF5, TIM	Rho guanine nucleotide exchange factor-5 (oncogene TIM)	ARHGEF5	7984	ENSG00000050327			Arhgef5 (MGI:1858952)
chr7	144396804	144410421	7q35	7q35	610934	NOBOX, POF5	Newborn ovary homeobox, mouse, homolog of	NOBOX	135935	ENSG00000106410		Premature ovarian failure 5, 611548 (3), Autosomal dominant	Nobox (MGI:108011)
chr7	144451940	144836423	7q34	7q35	606370	TPK1, THMD5	Thiamine pyrophosphokinase	TPK1	27010	ENSG00000196511		Thiamine metabolism dysfunction syndrome 5 (episodic encephalopathy type), 614458 (3), Autosomal recessive	Tpk1 (MGI:1352500)
chr7	146116206	148420997	7q35-q36	7q35-q36	604569	CNTNAP2, CASPR2, NRXN4, CDFE, AUTS15, PTHSL1	Contactin-associated protein-like 2	CNTNAP2	26047	ENSG00000174469		{Autism susceptibility 15}, 612100 (3); Cortical dysplasia-focal epilepsy syndrome, 610042 (3), Autosomal recessive; Pitt-Hopkins like syndrome 1, 610042 (3), Autosomal recessive	Cntnap2 (MGI:1914047)
chr7	148200000	159345973	7q36		605967	ACRPS	Acropectoral syndrome		85505			Acropectoral syndrome, 605967 (2), Autosomal dominant	
chr7	148200000	159345973	7q36		609636	AD10	Alzheimer disease-10		780912		max lod with D7S798	Alzheimer disease-10, 609636 (2), Autosomal dominant	
chr7	148200000	159345973	7q36		611016	AUTS10	Autism, susceptibility to, 10				max lod at D7S483	{Autism, susceptibility to, 10}, 611016 (2)	
chr7	148698156	148801109	7q36.1	7q36.1	603134	CUL1	Cullin 1	CUL1	8454	ENSG00000055130			Cul1 (MGI:1349658)
chr7	148807371	148884348	7q35	7q36.1	601573	EZH2, EZH1, WVS	Enhancer of zeste, Drosophila, homolog of, 2	EZH2	2146	ENSG00000106462	pseudogene on 21q22	Weaver syndrome, 277590 (3), Autosomal dominant	Ezh2 (MGI:107940)
chr7	148941487	148941570	7q36	7q36.1	601824	RNY5, Y5	RNA, Y5 small cytoplasmic	RNY5	6090				
chr7	148963314	148963409	7q36	7q36.1	601823	RNY4, Y4	RNA, Y4 small cytoplasmic	RNY4	6086				
chr7	148983754	148983855	7q36	7q36.1	601822	RNY3, Y3	RNA, Y3 small cytoplasmic	RNY3	6085				
chr7	148987135	148987247	7q36	7q36.1	601821	RNY1, Y1	RNA, Y1 small cytoplasmic	RNY1	6084				
chr7	149195461	149226247	7q36.1	7q36.1	603397	ZNF282, HUB1	Zinc finger protein 282	ZNF282	8427	ENSG00000170265			Zfp282 (MGI:2141413)
chr7	149239650	149255608	7q36.1	7q36.1	602386	ZNF212, ZNFC150, ZNF182	Zinc finger protein 212	ZNF212	7988	ENSG00000170260			Zfp212 (MGI:2682609)
chr7	149472792	149497831	7q36.1	7q36.1	613914	ZNF746, PARIS	Zinc finger protein 746	ZNF746	155061	ENSG00000181220			Zfp746 (MGI:1916478)
chr7	149764181	149776322	7q36.1	7q36.1	614040	ZNF467, EZI, ZFP467	Zinc finger protein 467	ZNF467	168544	ENSG00000181444			Zfp467 (MGI:1916160)
chr7	149776041	149833964	7q36.1	7q36.1	617356	SSPO	Subcommissural organ spondin	SSPO	23145	ENSG00000197558			Sspo (MGI:2674311)
chr7	149872967	149880712	7q36	7q36.1	611019	ATP6V0E2	ATPase, H+ transporting, lysosomal, 9kD, V- subunit E2	ATP6V0E2	155066	ENSG00000171130			Atp6v0e2 (MGI:1923502)
chr7	150041354	150045371	7q36.1	7q36.1	615171	LOC100134040	LOC100134040 gene		100134040				
chr7	150329848	150332720	7q36.1	7q36.1	615252	ZBED6CL, C7orf29	ZBED6 C terminus-like protein	ZBED6CL	113763	ENSG00000188707			
chr7	150338317	150341684	7q36.1	7q36.1	601973	RARRES2, TIG2	Retinoic acid receptor responder 2	RARRES2	5919	ENSG00000106538			Rarres2 (MGI:1918910)
chr7	150450629	150479394	7q36.1	7q36.1	616962	GIMAP8	GTPase, IMAP family, member 8	GIMAP8	155038	ENSG00000171115			Gimap8 (MGI:2685303)
chr7	150514856	150521072	7q36.1	7q36.1	616961	GIMAP7	GTPase IMAP family, member 7	GIMAP7	168537	ENSG00000179144			Gimap7 (MGI:1349657)
chr7	150567369	150573954	7q36.1	7q36.1	608087	GIMAP4, IMAP4, IAN1	GTPase, IMAP family, member 4	GIMAP4	55303	ENSG00000133574			Gimap4 (MGI:1349656)
chr7	150625374	150632647	7q36.1	7q36.1	616960	GIMAP6	GTPase, IMAP family, member 6	GIMAP6	474344	ENSG00000133561			Gimap6 (MGI:1918876)
chr7	150685705	150693640	7q36.1	7q36.1	608085	GIMAP2, IMAP2	GTPase, IMAP family, member 2	GIMAP2	26157	ENSG00000106560			
chr7	150716556	150724279	7q36.1	7q36.1	608084	GIMAP1, IMAP1	GTPase, IMAP family, member 1	GIMAP1	170575	ENSG00000213203			Gimap1 (MGI:109368)
chr7	150737347	150743648	7q36.1	7q36.1	608086	GIMAP5, IAN4L1, IMAP3	GTPase, IMAP family, member 5	GIMAP5	55340	ENSG00000196329			
chr7	150791286	150801359	7q36.1	7q36.1	610385	LR8	LR8 protein	TMEM176B	28959	ENSG00000106565			Tmem176b (MGI:1916348)
chr7	150800542	150805119	7q36.1	7q36.1	610334	TEM176A, HCA112, GS188	Transmembrane protein 176A	TMEM176A	55365	ENSG00000002933			Tmem176a (MGI:1913308)
chr7	150824874	150861290	7q31-q32	7q36.1	104610	ABP1	Amiloride-binding protein-1	AOC1	26	ENSG00000002726			Aoc1 (MGI:1923757)
chr7	150944955	150978313	7q35-q36	7q36.1	152427	KCNH2, LQT2, HERG, SQT1	Potassium voltage-gated channel, subfamily H, member 2 (human ether-a-go-go-related gene)	KCNH2	3757	ENSG00000055118		Long QT syndrome 2, 613688 (3), Autosomal dominant; {Long QT syndrome 2, acquired, susceptibility to}, 613688 (3), Autosomal dominant; Short QT syndrome 1, 609620 (3)	Kcnh2 (MGI:1341722)
chr7	150991055	151014598	7q36	7q36.1	163729	NOS3	Nitric oxide synthase 3, endothelial cell	NOS3	4846	ENSG00000164867		{Alzheimer disease, late-onset, susceptibility to}, 104300 (3), Autosomal dominant; {Coronary artery spasm 1, susceptibility to} (3); {Hypertension, pregnancy-induced}, 189800 (3), Autosomal dominant; {Hypertension, susceptibility to}, 145500 (3), Multifactorial; {Ischemic stroke, susceptibility to}, 601367 (3), Multifactorial; {Placental abruption} (3)	Nos3 (MGI:97362)
chr7	151012208	151028266	7q36.1	7q36.1	612205	ATG9B, NOS3AS, APG9L2, SONE	Autophagy 9, S. cerevisiae, homolog of, B	ATG9B	285973	ENSG00000181652			Atg9b (MGI:2685420)
chr7	151028421	151047781	7q35-q36	7q36.1	605464	ABCB8, MABC1	ATP-binding cassette, subfamily B, member 8	ABCB8	11194	ENSG00000197150			Abcb8 (MGI:1351667)
chr7	151048291	151052755	7q35	7q36.1	611741	ACCN3, ASIC3, TNAC1, DRASIC	Cation channel, amiloride-sensitive, neuronal 3	ASIC3	9311	ENSG00000213199			Asic3 (MGI:2159339)
chr7	151053811	151057964	7q36	7q36.1	123831	CDK5, LIS7	Cyclin-dependent kinase 5	CDK5	1020	ENSG00000164885	mutation identified in 1 LIS7 family	?Lissencephaly 7 with cerebellar hypoplasia, 616342 (3), Autosomal recessive	Cdk5 (MGI:101765)
chr7	151058199	151076526	7q35-q36	7q36.1	109280	SLC4A2, AE2, EPB3L1	Solute carrier family 4, anion exchanger, member 2 (erythrocyte membrane protein band 3-like 1)	SLC4A2	6522	ENSG00000164889			Slc4a2 (MGI:109351)
chr7	151076620	151080882	7q35	7q36.1	606965	FASTK, FAST	Fas-activated serine/threonine kinase	FASTK	10922	ENSG00000164896			Fastk (MGI:1913837)
chr7	151081084	151083532	7q36.1	7q36.1	614792	TMUB1, DULP, SB144, C7orf21	Transmembrane and ubiquitin-like domain-containing protein 1	TMUB1	83590	ENSG00000164897			Tmub1 (MGI:1923764)
chr7	151085830	151144435	7q36.1	7q36.1	616813	AGAP3, CENTG3, CRAG	ARF GTPase-activating protein with GTPase domain, ankyrin repeat, and pleckstrin homology domain 3	AGAP3	116988	ENSG00000133612			Agap3 (MGI:2183446)
chr7	151148008	151167547	7q36	7q36.1	603354	GBX1	Gastrulation brain homeobox 1	GBX1	2636	ENSG00000164900			Gbx1 (MGI:95667)
chr7	151175697	151187831	7q36.1	7q36.1	615054	ASB10, GLC1F	Ankyrin repeat- and SOCS box-containing protein 10	ASB10	136371	ENSG00000146926		Glaucoma 1, open angle, F, 603383 (3)	Asb10 (MGI:2152836)
chr7	151207836	151227373	7q36	7q36.1	612510	ABCF2, HUSSY18	ATP-binding cassette, subfamily F, member 2	ABCF2	10061	ENSG00000033050			Abcf2 (MGI:1351657)
chr7	151232488	151238826	7q36.1	7q36.1	608037	CHPF2, KIAA1402, CSGlcAT	Chondroitin polymerizing factor 2	CHPF2	54480	ENSG00000033100			Chpf2 (MGI:1917522)
chr7	151238420	151238537	7q36.1	7q36.1	615245	MIR671	Micro RNA 671	MIR671	768213				
chr7	151238972	151277451	7q35-q36	7q36.1	601737	SMARCD3, BAF60C	SWI/SNF related, matrix-associated, actin-dependent regulator of chromatin, subfamily D, member 3	SMARCD3	6604	ENSG00000082014			Smarcd3 (MGI:1914243)
chr7	151341698	151378460	7q36.1	7q36.1	607981	NUB1	Negative regulator of ubiquitin-like proteins 1	NUB1	51667	ENSG00000013374			Nub1 (MGI:1889001)
chr7	151466011	151519923	7q36	7q36.1	601293	RHEB, RHEB2	Ras homolog enriched in brain	RHEB	6009	ENSG00000106615			Rheb (MGI:97912)
chr7	151556113	151877230	7q36	7q36.1	602743	PRKAG2, WPWS, CMH6	Protein kinase, AMP-activated, noncatalytic, gamma-2	PRKAG2	51422	ENSG00000106617		Cardiomyopathy, hypertrophic 6, 600858 (3), Autosomal dominant; Glycogen storage disease of heart, lethal congenital, 261740 (3), Autosomal dominant; Wolff-Parkinson-White syndrome, 194200 (3), ?Autosomal dominant	Prkag2 (MGI:1336153)
chr7	151956378	152019933	7q36.1	7q36.1	615133	GALNTL5, GALNACT19	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 5	GALNTL5	168391	ENSG00000106648			Galntl5 (MGI:1915159)
chr7	152025654	152122346	7q36.1	7q36.1	615130	GALNT11, GALNACT11	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 11	GALNT11	63917	ENSG00000178234			Galnt11 (MGI:2444392)
chr7	152134924	152436641	7q36	7q36.1	606833	KMT2C, MLL3, KIAA1506, KLEFS2	Lysine (K)-specific methyltransferase 2C	KMT2C	58508	ENSG00000055609		Kleefstra syndrome 2, 617768 (3), Autosomal dominant	Kmt2c (MGI:2444959)
chr7	152646497	152676164	7q36.1	7q36.1	600375	XRCC2, FANCU	X-ray repair, complementing defective, repair in Chinese hamster cells-2	XRCC2	7516	ENSG00000196584	mutation identified in 1 FANCU patient	?Fanconi anemia, complementation group U, 617247 (3), Autosomal recessive	Xrcc2 (MGI:1927345)
chr7	153747985	154894289	7q36.2	7q36.2	126141	DPP6, VF2, MRD33	Dipeptidylpeptidase VI	DPP6	1804	ENSG00000130226		Mental retardation, autosomal dominant 33, 616311 (3); {Ventricular fibrillation, paroxysmal familial, 2}, 612956 (3), Autosomal dominant	Dpp6 (MGI:94921)
chr7	154943689	155003418	7q36	7q36.2	608254	PAXIP1, PAXIP1L, PTIP	PAX transcription activation domain-interacting protein 1	PAXIP1	22976	ENSG00000157212			
chr7	155070323	155087391	7q36.1	7q36.2	601305	HTR5A	5-hydroxytryptamine (serotonin) receptor-5A	HTR5A	3361	ENSG00000157219			Htr5a (MGI:96283)
chr7	155200000	159345973	7q36.3		613959	SCZD16, C16DUPq36.3, DUP7q36.3	Chromosome 7q36.3 duplication syndrome, 362kb				362kb duplication that includes VIPR2	Schizophrenia 16, 613959 (4)	
chr7	155297771	155310234	7q36	7q36.3	602055	INSIG1	Insulin-induced gene 1	INSIG1	3638	ENSG00000186480			Insig1 (MGI:1916289)
chr7	155356987	155367932	7q36	7q36.3	608450	BLACE	B-cell acute lymphoblastic leukemia-expressed gene	BLACE	338436				
chr7	155458128	155464830	7q36	7q36.3	131310	EN2	Engrailed-2	EN2	2020	ENSG00000164778			En2 (MGI:95390)
chr7	155501257	155533843	7q36.3	7q36.3	612493	CNPY1	Canopy 1, zebrafish, homolog of	CNPY1	285888	ENSG00000146910			Cnpy1 (MGI:2442451)
chr7	155799983	155812272	7q36	7q36.3	600725	SHH, HPE3, HLP3, SMMCI, MCOPCB5	Sonic hedgehog	SHH	6469	ENSG00000164690	separate from TPT1	Holoprosencephaly 3, 142945 (3), Autosomal dominant; Microphthalmia with coloboma 5, 611638 (3), Autosomal dominant; Schizencephaly, 269160 (3); Single median maxillary central incisor, 147250 (3), Autosomal dominant	Shh (MGI:98297)
chr7	156472098	156640653	7q36	7q36.3	610242	C7orf13	Chromosome 7 open reading frame 13	LINC01006	100506380		overlaps RNF32 on the opposite strand		
chr7	156640201	156678332	7q36	7q36.3	610241	RNF32	RING finger protein 32	RNF32	140545	ENSG00000105982			Rnf32 (MGI:1861747)
chr7	156669011	156893207	7q36	7q36.3	605522	LMBR1, ACHP, C7orf2, PPD2, THYP, LSS	Limb region 1, mouse, homolog of	LMBR1	64327	ENSG00000105983		Acheiropody, 200500 (3), Autosomal recessive; Hypoplastic or aplastic tibia with polydactyly, 188740 (3), Autosomal dominant; Laurin-Sandrow syndrome, 135750 (3), Autosomal dominant; Polydactyly, preaxial type II, 174500 (3), Autosomal dominant; Syndactyly, type IV, 186200 (3), Autosomal dominant; Triphalangeal thumb, type I, 174500 (3), Autosomal dominant; Triphalangeal thumb-polysyndactyly syndrome, 174500 (3), Autosomal dominant	Lmbr1 (MGI:1861746)
chr7	156949721	156973181	7q36	7q36.3	611269	NOM1, C7orf3	Nucleolar protein with MIF4G domain 1	NOM1	64434	ENSG00000146909			Nom1 (MGI:1861749)
chr7	157004852	157010652	7q36	7q36.3	142994	MNX1, HLXB9, HOXHB9, SCRA1	Motor neuron and pancreas homeobox 1	MNX1	3110	ENSG00000130675		Currarino syndrome, 176450 (3), Autosomal dominant	Mnx1 (MGI:109160)
chr7	157138951	157269371	7q36.3	7q36.3	614454	UBE3C, HECTH2, KIAA0010, KIAA10	Ubiquitin protein ligase E3C	UBE3C	9690	ENSG00000009335			Ube3c (MGI:2140998)
chr7	157337003	157417438	7q36.3	7q36.3	611332	DNAJB6, MRJ, DJ4, LGMD1E	DNAJ/HSP40 homolog, subfamily B, member 6	DNAJB6	10049	ENSG00000105993	previously assigned to 11q25	Muscular dystrophy, limb-girdle, type 1E, 603511 (3), Autosomal dominant	Dnajb6 (MGI:1344381)
chr7	157539051	158587801	7q36	7q36.3	601698	PTPRN2, IAR, ICAAR	Protein-tyrosine phosphatase, receptor-type, N, polypeptide 2	PTPRN2	5799	ENSG00000155093			Ptprn2 (MGI:107418)
chr7	158631168	158704830	7q36.3	7q36.3	608532	NCAPG2, CAPG2, MTB	Non-SMC condensin II complex subunit G2	NCAPG2	54892	ENSG00000146918			Ncapg2 (MGI:1923294)
chr7	158730996	158829627	7q36.3	7q36.3	616691	ESYT2, FAM62B	Extended synaptotagmin-like protein 2	ESYT2	57488	ENSG00000117868			Esyt2 (MGI:1261845)
chr7	158839244	158958694	7q36.3	7q36.3	615462	WDR60, SRTD8, SRPS6	WD repeat containing protein 60	WDR60	55112	ENSG00000126870		Short-rib thoracic dysplasia 8 with or without polydactyly, 615503 (3), Autosomal recessive	Wdr60 (MGI:2445085)
chr7	159028174	159144956	7q36.3	7q36.3	601970	VIPR2	Vasoactive intestinal peptide receptor 2	VIPR2	7434	ENSG00000106018			Vipr2 (MGI:107166)
chr7	0	159345973	Chr.7		608391	AIS2, VAMAS3	Autoimmune disease, susceptibility to, 2	AIS2	378426			{Autoimmune disease, susceptibility to, 2}, 608391 (2)	
chr7	0	159345973	Chr.7		118880	NHCP2	Nonhistone chromosomal protein-2						
chr8	0	19200000	8p23.3-p22		606129	DBA2	Diamond-Blackfan anemia 2		114086			Diamond-Blackfan anemia 2, 606129 (2)	
chr8	0	29000000	8p23-p21		612279	GEFSP6	Generalized epilepsy with febrile seizures plus, type 6		100190787		between D8S1706 and D8S549	Epilepsy, generalized, with febrile seizures plus, type 6, 612279 (2)	
chr8	0	19200000	8p23-p22		148370	KWE	Keratolytic winter erythema	KWE	3896			Keratolytic winter erythema, 148370 (2), Autosomal dominant	
chr8	0	12800000	8p23		609259	MYP10	Myopia 10	MYP10	553195			Myopia 10, 609259 (2), Multifactorial	
chr8	0	19200000	8p23-p22		615174	TDH	L-threonine dehydrogenase, pseudogene	TDH	157739				
chr8	0	12800000	8p23		606662	WS2C	Waardenburg syndrome, type 2C		170594			Waardenburg syndrome, type 2C, 606662 (2)	
chr8	406807	469875	8p23.3	8p23.3	609098	FBXO25, FBX25	F-box only protein 25	FBXO25	26260	ENSG00000147364			Fbxo25 (MGI:1914072)
chr8	737604	1708475	8p	8p23.3	605438	DLGAP2, DAP2	Discs large associated protein 2	DLGAP2	9228	ENSG00000198010			Dlgap2 (MGI:2443181)
chr8	1755777	1786569	8p23	8p23.3	607837	CLN8, EPMR	CLN8 gene	CLN8	2055	ENSG00000182372		Ceroid lipofuscinosis, neuronal, 8, 600143 (3), Autosomal recessive; Ceroid lipofuscinosis, neuronal, 8, Northern epilepsy variant, 610003 (3), Autosomal recessive	Cln8 (MGI:1349447)
chr8	1823975	1958640	8p23	8p23.3	608136	ARHGEF10, KIAA0294, SNCV	Rho guanine nucleotide exchange factor 10	ARHGEF10	9639	ENSG00000104728	mutation identified in 1 SNCV family	?Slowed nerve conduction velocity, AD, 608236 (3), Autosomal dominant	Arhgef10 (MGI:2444453)
chr8	2045042	2145455	8p23.3	8p23.3	603509	MYOM2	Myomesin 2	MYOM2	9172	ENSG00000036448			Myom2 (MGI:1328358)
chr8	2935352	4995034	8p23	8p23.2	608397	CSMD1, KIAA1890	Cub and Sushi multiple domains 1	CSMD1	64478	ENSG00000183117			Csmd1 (MGI:2137383)
chr8	6300000	12800000	8p23.1		222400	DIH2	Hernia, congenital diaphragmatic 2		780899			Hernia, congenital diaphragmatic 2, 222400 (2), Autosomal recessive	
chr8	6300000	12800000	8p23.1		612254	SLEB12	Systemic lupus erythematosus, susceptibility to, 12		100190928		associated with rs13277113	{Systemic lupus erythematosus, susceptibility to, 12}, 612254 (2)	
chr8	6406591	6648504	8p23	8p23.1	607117	MCPH1	Microcephalin	MCPH1	79648	ENSG00000147316	genetic heterogeneity	Microcephaly 1, primary, autosomal recessive, 251200 (3), Autosomal recessive	Mcph1 (MGI:2443308)
chr8	6499650	6563419	8p23	8p23.1	601922	ANGPT2, ANG2	Angiopoietin 2	ANGPT2	285	ENSG00000091879	close to MCPH1		Angpt2 (MGI:1202890)
chr8	6708356	6761502	8p23.1	8p23.1	614796	AGPAT5	1-acylglycerol-3-phosphate O-acyltransferase 5	AGPAT5	55326	ENSG00000155189			Agpat5 (MGI:1196345)
chr8	6870574	6878006	8p23.1	8p23.1	602056	DEFB1	Defensin, beta-1	DEFB1	1672	ENSG00000164825			
chr8	6924693	6926075	8p23.1	8p23.1	600471	DEFA6, DEF6	Defensin, alpha-6, Paneth cell-specific	DEFA6	1671	ENSG00000164822			
chr8	6935819	6938337	8p23	8p23.1	601157	DEFA4, DEF4, HP4	Defensin, alpha-4, corticostatin	DEFA4	1669	ENSG00000164821			
chr8	6977648	6980119	8p23.1	8p23.1	125220	DEFA1, DEF1, MRS	Defensin, alpha-1, myeloid-related sequence	DEFA1	1667	ENSG00000206047			
chr8	7055299	7056738	8p23.1	8p23.1	600472	DEFA5, DEF5	Defensin, alpha-5, Paneth cell-specific	DEFA5	1670	ENSG00000164816			
chr8	7255242	7260475	8p23.1	8p23.1	613051	FAM90A15	Family with sequence similarity 90, member A15	FAM90A15P	389630		copy 1		
chr8	7262865	7268097	8p23.1	8p23.1	613042	FAM90A3	Family with sequence similarity 90, member A3	FAM90A3P	389611		copy 2		
chr8	7278109	7283341	8p23.1	8p23.1	613049	FAM90A13	Family with sequence similarity 90, member A13	FAM90A13P	441314		copy 4		
chr8	7285731	7290963	8p23.1	8p23.1	613043	FAM90A5	Family with sequence similarity 90, member A5	FAM90A5P	441315		copy 5		
chr8	7293353	7298583	8p23.1	8p23.1	613054	FAM90A20	Family with sequence similarity 90, member A20	FAM90A20P	728430		copy 6		
chr8	7428887	7430347	8p23.1	8p23.1	606611	DEFB103A, DEFB3, HBD3, HBP3	Defensin, beta 103A	DEFB103B	55894	ENSG00000177243			
chr8	7447753	7463669	8p23-p22	8p23.1	606560	SPAG11, HE2, EP2	Sperm-associated antigen 11	SPAG11B	10407	ENSG00000164871			Spag11b (MGI:3647173)
chr8	7556137	7559103	8p23.1	8p23.1	613044	FAM90A7	Family with sequence similarity 90, member A7	FAM90A7P	441317		copy 8		
chr8	7713782	7719014	8p23.1	8p23.1	613050	FAM90A14	Family with sequence similarity 90, member A14	FAM90A14P	645651		copy 12		
chr8	7721428	7726662	8p23.1	8p23.1	613052	FAM90A18	Family with sequence similarity 90, member A18	FAM90A18P	441326		copy 13		
chr8	7736724	7741957	8p23.1	8p23.1	613045	FAM90A8	Family with sequence similarity 90, member A8	FAM90A8P	441324		copy 15		
chr8	7752019	7757253	8p23.1	8p23.1	613053	FAM90A19	Family with sequence similarity 90, member A19	FAM90A19P	728753		copy 17		
chr8	7759667	7764901	8p23.1	8p23.1	613046	FAM90A9	Family with sequence similarity 90, member A9	FAM90A9P	441327		copy 18		
chr8	7769583	7771312	8p23.1	8p23.1	613047	FAM90A10	Family with sequence similarity 90, member A10	FAM90A10P	441328		copy 19		
chr8	7894564	7896715	8p23.1	8p23.1	602215	DEFB4A, DEFB4, DEFB2	Defensin, beta-4a (formerly defensin, beta-2)	DEFB4A	1673	ENSG00000171711			
chr8	8027073	8032304	8p23.1	8p23.1	613048	FAM90A12	Family with sequence similarity 90, member A12	FAM90A12P	645879		copy 22		
chr8	8317730	8386440	8p23.1	8p23.1	617344	PRAG1, PRAGMIN, NACK	PEAK1-related kinase-activating pseudokinase 1	PRAG1	157285	ENSG00000275342			Prag1 (MGI:1196223)
chr8	8702155	8704106	8p23.1	8p23.1	609203	CLDN23	Claudin 23	CLDN23	137075	ENSG00000253958			Cldn23 (MGI:1919158)
chr8	8783353	8893620	8p23.1	8p23.1	605352	MFHAS1, MASL1	Malignant fibrous histiocytoma-amplified sequences with leucine-rich tandem repeats-1	MFHAS1	9258	ENSG00000147324		Malignant fibrous histiocytoma, 605352 (2)	Mfhas1 (MGI:1098644)
chr8	9136253	9151641	8p23	8p23.1	610541	PPP1R3B, GL	Protein phosphatase 1, regulatory subunit 3B	PPP1R3B	79660	ENSG00000173281			Ppp1r3b (MGI:2177268)
chr8	9555229	9782345	Chr.8	8p23.1	603303	TNKS	TRF1-interacting, ankyrin-related ADP-ribose polymerase (tankyrase)	TNKS	8658	ENSG00000173273			Tnks (MGI:1341087)
chr8	9903387	9903471	8p23.1	8p23.1	609327	MIR124-1, MIR124A	Micro RNA 124-1	MIR124-1	406907				
chr8	10054223	10428890	8p23.1	8p23.1	601250	MSRA	Peptide methionine sulfoxide reductase	MSRA	4482	ENSG00000175806			Msra (MGI:106916)
chr8	10525483	10554165	8p23.1	8p23.1	615144	PRSS55, TSP1	Protease, serine, 55	PRSS55	203074	ENSG00000184647			Prss55 (MGI:1918287)
chr8	10606348	10655106	8p23	8p23.1	608581	RP1L1	RP1-like protein 1	RP1L1	94137	ENSG00000183638		Occult macular dystrophy, 613587 (3), Autosomal dominant	Rp1l1 (MGI:2384303)
chr8	10723767	10730573	8p22	8p23.1	612202	SOX7	SRY-box 7	SOX7	83595	ENSG00000171056			Sox7 (MGI:98369)
chr8	10764960	10839898	8p23	8p23.1	606505	PINX1	PIN2-interacting protein 1	PINX1	54984	ENSG00000254093			Pinx1 (MGI:1919650)
chr8	11284415	11328145	8p23-p22	8p23.1	606260	MTMR9, MTMR8	Myotubularin-related protein 9	MTMR9	66036	ENSG00000104643			Mtmr9 (MGI:2442842)
chr8	11330985	11332185	8p21.3	8p23.1	615199	SLC35G5, AMAC, AMAC1L2	Solute carrier family 35, member G5	SLC35G5	83650	ENSG00000177710			
chr8	11421463	11475908	8p23-p22	8p23.1	610085	FAM167A, C8orf13	Family with sequence similarity 167, member A	FAM167A	83648	ENSG00000154319			Fam167a (MGI:3606565)
chr8	11493990	11564603	8p23-p22	8p23.1	191305	BLK, MODY11	BLK nonreceptor tyrosine kinase	BLK	640	ENSG00000136573		Maturity-onset diabetes of the young, type 11, 613375 (3), Autosomal dominant	Blk (MGI:88169)
chr8	11676918	11760001	8p23.1-p22	8p23.1	600576	GATA4, ASD2, VSD1, TACHD, TOF	GATA-binding protein-4	GATA4	2626	ENSG00000136574	mutations identified in 1 TACHD family	Atrial septal defect 2, 607941 (3), Autosomal dominant; Atrioventricular septal defect 4, 614430 (3), Autosomal dominant; ?Testicular anomalies with or without congenital heart disease, 615542 (3), Autosomal dominant; Tetralogy of Fallot, 187500 (3), Autosomal dominant; Ventricular septal defect 1, 614429 (3), Autosomal dominant	Gata4 (MGI:95664)
chr8	11769624	11787354	8p23.1	8p23.1	608933	NEIL2, NEI2	Endonuclease VIII-like 2	NEIL2	252969	ENSG00000154328			Neil2 (MGI:2686058)
chr8	11795572	11839308	8p23.1-p22	8p23.1	184420	FDFT1, DGPT	Farnesyl-diphosphate farnesyltransferase 1 (squalene synthase)	FDFT1	2222	ENSG00000079459			Fdft1 (MGI:102706)
chr8	11842523	11868149	8p22	8p23.1	116810	CTSB, CPSB	Cathepsin B	CTSB	1508	ENSG00000164733	13q14 by rat probe		Ctsb (MGI:88561)
chr8	12137167	12138759	8p23.1	8p23.1	610186	USP17L2, DUB3	Ubiquitin specific peptidase 17-like family member 2	USP17L2	377630	ENSG00000223443			
chr8	12182103	12195435	8p23.1	8p23.1	616122	FAM86B1	Family with sequence similarity 86, member B1	FAM86B1	85002	ENSG00000186523			
chr8	12425400	12436405	8p23.1	8p23.1	616123	FAM86B2	Family with sequence similarity 86, member B2	FAM86B2	653333	ENSG00000145002			
chr8	12800000	19200000	8p22		614252	ANIB11	Aneurysm, intracranial berry, 11		100750328		max lod at D8S552	Aneurysm, intracranial berry, 11, 614252 (2)	
chr8	12800000	19200000	8p22		612030	CHDS9	Coronary heart disease, susceptibility to, 9		100188877		max lod at D8S1106	{Coronary heart disease, susceptibility to, 9}, 612030 (2)	
chr8	12800000	23500000	8p22-p21.3		612789	DFNB71	Deafness, autosomal recessive 71	DFNB71	100302513		max lod at D8S261	Deafness, autosomal recessive 71, 612789 (2), Autosomal recessive	
chr8	12800000	54600000	8p22-q11		610099	MPD3	Myopathy, distal 3		780920		possible locus on 12q13-q22	Myopathy, distal 3, 610099 (2), Autosomal dominant	
chr8	12945673	13029776	8p22	8p22	615666	KIAA1456, TRM9L	KIAA1456 gene	TRMT9B	57604	ENSG00000250305			6430573F11Rik (MGI:2442328)
chr8	13083360	13604615	8p22-p21.3	8p22	604258	DLC1	Deleted in liver cancer 1	DLC1	10395	ENSG00000164741		Colorectal cancer, somatic, 114500 (3)	Dlc1 (MGI:1354949)
chr8	14084834	15238282	8p22	8p22	608113	SGCZ, ZSG1	Sarcoglycan, zeta	SGCZ	137868	ENSG00000185053			Sgcz (MGI:2388820)
chr8	15540086	15766648	8p22	8p22	601385	TUSC3, M33, D8S1992, MRT7, MRT22	Tumor suppressor candidate 3	TUSC3	7991	ENSG00000104723		Mental retardation, autosomal recessive 7, 611093 (3), Autosomal recessive	Tusc3 (MGI:1933134)
chr8	16107877	16192790	8p22	8p22	153622	MSR1, SCARA1, SRA	Macrophage scavenger receptor	MSR1	4481	ENSG00000038945	~11cM distal to LPL	Barrett esophagus/esophageal adenocarcinoma, 614266 (3)	Msr1 (MGI:98257)
chr8	16992824	17002164	8p22-p21.3	8p22	605558	FGF20, RHDA2	Fibroblast growth factor-20	FGF20	26281	ENSG00000078579	mutation identified in 1 RHDA2 family	?Renal hypodysplasia/aplasia 2, 615721 (3), Autosomal recessive	Fgf20 (MGI:1891346)
chr8	17027237	17133068	8p22	8p22	610633	MICU3, EFHA2	Mitochondrial calcium uptake protein 3	MICU3	286097	ENSG00000155970			Micu3 (MGI:1925756)
chr8	17221980	17246908	8p22-p21.3	8p22	604913	CNOT7, CAF1	CCR4-NOT transcription complex, subunit 7	CNOT7	29883	ENSG00000198791			Cnot7 (MGI:1298230)
chr8	17246891	17333531	8p23-p21	8p22	609927	VPS37A, HCRP1, SPG53	Vacuolar protein sorting 37A	VPS37A	137492	ENSG00000155975		Spastic paraplegia 53, autosomal recessive, 614898 (3), Autosomal recessive	Vps37a (MGI:1261835)
chr8	17296127	17413530	8p22	8p22	603562	MTMR7	Myotubularin-related protein 7	MTMR7	9108	ENSG00000003987			Mtmr7 (MGI:1891693)
chr8	17494348	17570567	8p22	8p22	601872	SLC7A2, ATRC2, HCAT2	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 2	SLC7A2	6542	ENSG00000003989			Slc7a2 (MGI:99828)
chr8	17576432	17643132	8p22-p21.3	8p22	604584	PDGFRL, PDGRL, PRLTS	Platelet-derived growth factor receptor-like	PDGFRL	5157	ENSG00000104213		Colorectal cancer, somatic, 114500 (3); Hepatocellular cancer, somatic, 114550 (3)	Pdgfrl (MGI:1916047)
chr8	17864379	17909982	8p22	8p22	605776	FGL1, HFREP1	Fibrinogen-like 1	FGL1	2267	ENSG00000104760			Fgl1 (MGI:102795)
chr8	17922783	18029947	8p22-p21.3	8p22	600299	PCM1, PTC4	Pericentriolar material 1	PCM1	5108	ENSG00000078674	fused with RET to form PTC4		Pcm1 (MGI:1277958)
chr8	18056298	18084997	8p22-p21.3	8p22	613468	ASAH1, AC, SMAPME	N-acylsphingosine amidohydrolase (acid ceramidase) 1	ASAH1	427	ENSG00000104763		Farber lipogranulomatosis, 228000 (3), Autosomal recessive; Spinal muscular atrophy with progressive myoclonic epilepsy, 159950 (3), Autosomal recessive	Asah1 (MGI:1277124)
chr8	18170418	18223688	8p23.1-p21.3	8p22	108345	NAT1, AAC1	Arylamine N-acetyltransferase-1	NAT1	9	ENSG00000171428			Nat2 (MGI:109201)
chr8	18386584	18401218	8p23.1-p21.3	8p22	612182	NAT2, AAC2	Arylamine N-acetyltransferase-2	NAT2	10	ENSG00000156006	acetylation polymorphism	[Acetylation, slow], 243400 (3), Autosomal recessive	Nat1 (MGI:97279)
chr8	18527302	19086908	8p22	8p22	614440	PSD3, HCA67, EFA6R	Pleckstrin and Sec7 domains-containing protein 3	PSD3	23362	ENSG00000156011			Psd3 (MGI:1918215)
chr8	19200000	29000000	8p21		603013	SCZD6	Schizophrenia susceptibility locus, chromosome 8p-related	SCZD6	8400		?neuregulin 1	{Schizophrenia}, 181500 (2), Autosomal dominant	
chr8	19313442	19396217	8p22	8p21.3	614968	SH2D4A, SH2A, PPP1R38	SH2 domain-containing protein 4A	SH2D4A	63898	ENSG00000104611			Sh2d4a (MGI:1919531)
chr8	19404160	19758028	8p21.3	8p21.3	616615	CSGALNACT1	Chondroitin sulfate N-acetylgalactosaminyltransferase 1	CSGALNACT1	55790	ENSG00000147408			Csgalnact1 (MGI:2442354)
chr8	19817148	19852082	8p21.3	8p21.3	611353	INTS10, INT10	Integrator complex subunit 10	INTS10	55174	ENSG00000104613			Ints10 (MGI:1918135)
chr8	19939070	19967258	8p22	8p21.3	609708	LPL, LIPD, HDLCQ11	Lipoprotein lipase	LPL	4023	ENSG00000175445		Combined hyperlipidemia, familial, 144250 (3), Autosomal dominant; [High density lipoprotein cholesterol level QTL 11] (3); Lipoprotein lipase deficiency, 238600 (3), Autosomal recessive	Lpl (MGI:96820)
chr8	20144854	20183205	8p21.3	8p21.3	193002	SLC18A1, VMAT1, VAT1, CGAT	Solute carrier family 18 (vesicular monoamine), member 1	SLC18A1	6570	ENSG00000036565			Slc18a1 (MGI:106684)
chr8	20197192	20226851	8p21.3	8p21.3	606939	ATP6V1B2, ATP6B2, VPP3, DOOD, ZLS2	ATPase, H+ transporting, lysosomal, V1 subunit B, isoform 2	ATP6V1B2	526	ENSG00000147416		Deafness, congenital, with onychodystrophy, autosomal dominant, 124480 (3), Autosomal dominant; Zimmermann-Laband syndrome 2, 616455 (3), Autosomal dominant	Atp6v1b2 (MGI:109618)
chr8	20246164	20303980	8p22	8p21.3	606551	LZTS1, F37, FEZ1	Leucine zipper, putative tumor suppressor 1	LZTS1	11178	ENSG00000061337		Esophageal squamous cell carcinoma, 133239 (3), Autosomal dominant	Lzts1 (MGI:2684762)
chr8	21690402	21789295	8p21	8p21.3	601956	GFRA2, GDNFRB	GDNF family receptor alpha-2	GFRA2	2675	ENSG00000168546			Gfra2 (MGI:1195462)
chr8	21908872	21913716	8p21.3	8p21.3	604997	DOK2, P56DOK	Docking protein 2	DOK2	9046	ENSG00000147443			Dok2 (MGI:1332623)
chr8	21919668	22006584	8p21.3	8p21.3	606140	XPO7, RANBP16, KIAA0745	Exportin 7	XPO7	23039	ENSG00000130227			Xpo7 (MGI:1929705)
chr8	22023307	22036907	8p21.3	8p21.3	608073	NPM2	Nucleophosmin/nucleoplasmin family, member 2	NPM2	10361	ENSG00000158806			Npm2 (MGI:1890811)
chr8	22039707	22048808	8p21.3	8p21.3	603725	FGF17, HH20	Fibroblast growth factor 17	FGF17	8822	ENSG00000158815		Hypogonadotropic hypogonadism 20 with or without anosmia, 615270 (3), Autosomal dominant	Fgf17 (MGI:1202401)
chr8	22048954	22082526	8p21.1	8p21.3	125305	EPB49, DMT	Erythrocyte membrane protein band 49 (dematin)	DMTN	2039	ENSG00000158856			Dmtn (MGI:99670)
chr8	22106871	22110354	8p21.3	8p21.3	615791	NUDT18, MTH3	Nucleoside diphosphate-linked moiety X motif 18	NUDT18	79873	ENSG00000275074			Nudt18 (MGI:2385853)
chr8	22114418	22133383	8p21.2	8p21.3	602302	HR, AU, MUHH1, HYPT4	Hairless, mouse, homolog of	HR	55806	ENSG00000168453		Alopecia universalis, 203655 (3), Autosomal recessive; Atrichia with papular lesions, 209500 (3), Autosomal recessive; Hypotrichosis 4, 146550 (3), Autosomal dominant	Hr (MGI:96223)
chr8	22138013	22141950	8p21.3	8p21.3	609349	REEP4, C8orf20	Receptor expression-enhancing protein 4	REEP4	80346	ENSG00000168476			Reep4 (MGI:1919799)
chr8	22146829	22156830	8p21.3	8p21.3	608302	LGI3	Leucine-rich gene, glioma-inactivated, 3	LGI3	203190	ENSG00000168481			Lgi3 (MGI:2182619)
chr8	22161670	22164478	8p21	8p21.3	178620	SFTPC, SFTP2, SMDP2	Surfactant, pulmonary-associated protein C (pulmonary surfactant apoprotein-2, SP-C)	SFTPC	6440	ENSG00000168484		Surfactant metabolism dysfunction, pulmonary, 2, 610913 (3), Autosomal dominant	Sftpc (MGI:109517)
chr8	22165139	22212325	8p21	8p21.3	112264	BMP1, OI13	Bone morphogenetic protein-1	BMP1	649	ENSG00000168487	1kb 3' to SFTP2	Osteogenesis imperfecta, type XIII, 614856 (3), Autosomal recessive	Bmp1 (MGI:88176)
chr8	22244961	22245042	8p21.3	8p21.3	614112	MIR320A, MIRN320A	Micro RNA 320A	MIR320A	407037				
chr8	22245103	22251166	8q21	8p21.3	187280	POLR3D, BN51T, TSBN51	Polymerase III, RNA, subunit D	POLR3D	661	ENSG00000168495			Polr3d (MGI:1914315)
chr8	22275279	22356865	8p21.3	8p21.3	610312	PIWIL2, MILI	PIWI-like 2	PIWIL2	55124	ENSG00000197181			Piwil2 (MGI:1930036)
chr8	22367229	22434128	8p21.3	8p21.3	608736	SLC39A14, ZIP14, KIAA0062, HMNDYT2	Solute carrier family 39 (zinc transporter), member 14	SLC39A14	23516	ENSG00000104635		Hypermanganesemia with dystonia 2, 617013 (3), Autosomal recessive	Slc39a14 (MGI:2384851)
chr8	22440969	22541465	Chr.8	8p21.3	114107	PPP3CC, CALNA3	Protein phosphatase-3 (formerly 2B), catalytic subunit, gamma isoform (calcineurin A gamma)	PPP3CC	5533	ENSG00000120910			Ppp3cc (MGI:107162)
chr8	22544989	22575494	8p21.3	8p21.3	610795	SORBS3, SCAM1, SH3D4	Sorbin and SH3 domains-containing 3	SORBS3	10174	ENSG00000120896			Sorbs3 (MGI:700013)
chr8	22578740	22598024	8p21.2	8p21.3	609722	PDLIM2, MYSTIQUE	PDZ and LIM domain protein 2	PDLIM2	64236	ENSG00000120913			Pdlim2 (MGI:2384850)
chr8	22604631	22620470	8p21	8p21.3	607359	CCAR2, DBC1, KIAA1967	Cell division cycle and apoptosis regulator 2	CCAR2	57805	ENSG00000158941			Ccar2 (MGI:2444228)
chr8	22620417	22669147	8p21.3	8p21.3	606396	BIN3	Bridging integrator 3	BIN3	55909	ENSG00000147439			Bin3 (MGI:1929883)
chr8	22687660	22693301	8p23-p21	8p21.3	602419	EGR3	Early growth response 3	EGR3	1960	ENSG00000179388			Egr3 (MGI:1306780)
chr8	22713250	22941094	8p21.2	8p21.3	612473	PEPB4, CORK1	Phosphatidylethanolamine-binding protein 4	PEBP4	157310	ENSG00000134020			Pebp4 (MGI:1920773)
chr8	22987405	23020196	8p21.2	8p21.3	607352	RHOBTB2, DBC2, KIAA0717	Rho-related BTB domain-containing protein 2	RHOBTB2	23221	ENSG00000008853			Rhobtb2 (MGI:2180557)
chr8	23020132	23069186	8p22-p21	8p21.3	603612	TNFRSF10B, DR5, TRAILR2	Tumor necrosis factor receptor superfamily, member 10B	TNFRSF10B	8795	ENSG00000120889		Squamous cell carcinoma, head and neck, 275355 (3), Autosomal recessive	
chr8	23102813	23117436	8p22-p21	8p21.3	603613	TNFRSF10C, DCR1, TRAILR3, TRID	Tumor necrosis factor receptor superfamily, member 10C	TNFRSF10C	8794				
chr8	23135587	23164029	8p21	8p21.3	603614	TNFRSF10D, DCR2, TRAILR4	Tumor necrosis factor receptor superfamily, member 10D	TNFRSF10D	8793	ENSG00000173530			
chr8	23191456	23225166	8p21	8p21.3	603611	TNFRSF10A, DR4, TRAILR1, APO2	Tumor necrosis factor receptor superfamily, member 10A	TNFRSF10A	8797	ENSG00000104689			Tnfrsf10b (MGI:1341090)
chr8	23243636	23261999	8p21.3	8p21.3	611130	CHMP7	CHMP family, member 7	CHMP7	91782	ENSG00000147457			Chmp7 (MGI:1913922)
chr8	23296896	23404208	8p21.3-p21.2	8p21.3	606663	LOXL2	Lysyl oxidase-like 2	LOXL2	4017	ENSG00000134013			Loxl2 (MGI:2137913)
chr8	23429151	23457730	8p21.3	8p21.3	607577	ENTPD4, LYSAL1, LAP70, KIAA0392	Ectonucleoside triphosphate diphosphohydrolase 4	ENTPD4	9583	ENSG00000197217			Entpd4,Entpd4b (MGI:1914714,MGI:5435040)
chr8	23528794	23575462	8p21	8p21.2	610387	SLC25A37, MFRN, MFRN1	Solute carrier family 25 (mitochondrial iron carrier), member 37	SLC25A37	51312	ENSG00000147454			Slc25a37 (MGI:1914962)
chr8	23678692	23682936	8p21	8p21.2	602041	NKX3-1, NKX3A, BAPX2	NK3 homeo box 1	NKX3-1	4824	ENSG00000167034			Nkx3-1 (MGI:97352)
chr8	23702450	23706597	8p21	8p21.2	611770	NKX2-6, CSX2, CTHM	NK2, Drosophila, homolog of, 6	NKX2-6	137814	ENSG00000180053		Conotruncal heart malformations, 217095 (3); Persistent truncus arteriosus, 217095 (3)	Nkx2-6 (MGI:97351)
chr8	23841920	23854806	8p21-p11.2	8p21.2	601185	STC1, STC	Stanniocalcin 1	STC1	6781	ENSG00000159167			Stc1 (MGI:109131)
chr8	24294039	24359017	8p12	8p21.2	606188	ADAM28, MDCL	A disintegrin and metalloproteinase domain 28	ADAM28	10863	ENSG00000042980			Adam28 (MGI:105988)
chr8	24384284	24406012	8p12	8p21.2	606393	ADAMDEC1, DECYSIN	A disintegrin and metalloproteinase domain-like protein decysin 1	ADAMDEC1	27299	ENSG00000134028			Adamdec1 (MGI:1917650)
chr8	24440995	24509564	8p12	8p21.2	607310	ADAM7	A disintegrin and metalloproteinase domain 7	ADAM7	8756	ENSG00000069206			Adam7 (MGI:107247)
chr8	24913760	24919092	8p21	8p21.2	162250	NEFM, NEF3, NFM	Neurofilament protein, medium polypeptide	NEFM	4741	ENSG00000104722			
chr8	24950954	24956868	8p21	8p21.2	162280	NEFL, CMT2E, CMT1F, CMTDIG	Neurofilament, light polypeptide	NEFL	4747	ENSG00000277586		Charcot-Marie-Tooth disease, dominant intermediate G, 617882 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 1F, 607734 (3), Autosomal recessive, Autosomal dominant; Charcot-Marie-Tooth disease, type 2E, 607684 (3), Autosomal dominant	Nefl (MGI:97313)
chr8	25184722	25415715	8p21.2	8p21.2	616904	DOCK5	Dedicator of cytokinesis 5	DOCK5	80005	ENSG00000147459			Dock5 (MGI:2652871)
chr8	25419257	25425039	8p21-p11.2	8p21.2	152760	GNRH1, LNRH, HH12	Gonadotropin-releasing hormone-1 (luteinizing-releasing hormone)	GNRH1	2796	ENSG00000147437	mutation identified in 1 HH12 family	?Hypogonadotropic hypogonadism 12 with or without anosmia, 614841 (3), Autosomal recessive	Gnrh1 (MGI:95789)
chr8	25424356	25458467	8p21.2	8p21.2	617265	KCTD9, BTBD27	Potassium channel tetramerization domain-containing protein 9	KCTD9	54793	ENSG00000104756			Kctd9 (MGI:2145579)
chr8	25841729	26045123	8p21.2	8p21.2	609934	EBF2	Early B-cell factor 2	EBF2	64641	ENSG00000221818			Ebf2 (MGI:894332)
chr8	26383006	26413128	8p21	8p21.2	605368	BNIP3L, NIX	BCL2/adenovirus E1B 19-kD protein-interacting protein 3-like	BNIP3L	665	ENSG00000104765			Bnip3l,Bnip3l-ps (MGI:1332659,MGI:3642435)
chr8	26504679	26513966	8p21.2	8p21.2	603970	PNMA2, MA2, MM2	Paraneoplastic MA antigen 2	PNMA2	10687	ENSG00000240694			Pnma2 (MGI:2444129)
chr8	26514192	26658176	8p21	8p21.2	602463	DPYSL2, DRP2, CRMP2	Dihydropyrimidinase-like 2	DPYSL2	1808	ENSG00000092964			Dpysl2 (MGI:1349763)
chr8	26738112	26870993	8p21	8p21.2	104221	ADRA1C	Adrenergic, alpha-1C-, receptor	ADRA1A	148	ENSG00000120907	.03cM from NEFL		Adra1a (MGI:104773)
chr8	27284885	27311318	8p21.1	8p21.2	617007	TRIM35, MAIR, HLS5, KIAA1098	Tripartite motif-containing protein 35	TRIM35	23087	ENSG00000104228			Trim35 (MGI:1914104)
chr8	27311481	27459390	8p22-p11.2	8p21.2	601212	PTK2B, FAK2, PYK2	Protein tyrosine kinase-2, beta (focal adhesion kinase 2)	PTK2B	2185	ENSG00000120899			Ptk2b (MGI:104908)
chr8	27459760	27479295	8p21	8p21.2	118502	CHRNA2	Cholinergic receptor, nicotinic, alpha polypeptide-2	CHRNA2	1135	ENSG00000120903		Epilepsy, nocturnal frontal lobe, type 4, 610353 (3), Autosomal dominant	Chrna2 (MGI:87886)
chr8	27491001	27597558	8p21-p12	8p21.2-p21.1	132811	EPHX2	Epoxide hydrolase 2, cytoplasmic	EPHX2	2053	ENSG00000120915		{Hypercholesterolemia, familial, due to LDLR defect, modifier of}, 143890 (3), Autosomal dominant	Ephx2 (MGI:99500)
chr8	27500000	29000000	8p21.1		240400	GULOP, GULO	Gulonolactone (L-) oxidase pseudogene	GULOP	2989			Scurvy (3)	
chr8	27500000	72000000	8p21.1-q13.3		611945	SPG37	Spastic paraplegia 37	SPG37	100049159		max lod at D8S601	Spastic paraplegia 37, autosomal dominant, 611945 (2), Autosomal dominant	
chr8	27596916	27615030	8p21-p12	8p21.1	185430	CLU, CLI, SGP2, TRPM2	Clusterin (complement lysis inhibitor, SP-40,40; sulfated glycoprotein 2; testosterone-repressed prostate message-2; apolipoprotein J)	CLU	1191	ENSG00000120885			Clu (MGI:88423)
chr8	27633664	27736593	8p21	8p21.1	602728	SCARA3, MSLR1, CSR	Scavenger receptor class A, member 3	SCARA3	51435	ENSG00000168077			Scara3 (MGI:2444418)
chr8	27771948	27812429	8p21.1	8p21.1	609353	ESCO2	Establishment of cohesion 1, S. cerevisiae, homolog of, 2	ESCO2	157570	ENSG00000171320		Roberts syndrome, 268300 (3), Autosomal recessive; SC phocomelia syndrome, 269000 (3), Autosomal recessive	Esco2 (MGI:1919238)
chr8	27809620	27838094	8p21.1	8p21.1	611210	PBK, TOPK	PDZ-binding kinase	PBK	55872	ENSG00000168078			Pbk (MGI:1289156)
chr8	27869881	27992851	8p21.1	8p21.1	611306	SCARA5	Scavenger receptor class A, member 5	SCARA5	286133	ENSG00000168079			Scara5 (MGI:1918395)
chr8	28090230	28191152	8p21.1	8p21.1	612722	ELP3, KAT9	Elongation protein 3, S. cerevisiae, homolog of	ELP3	55140	ENSG00000134014			Elp3 (MGI:1921445)
chr8	28316978	28343354	8p21	8p21.1	601459	PNOC, PPNOC	Prepronociceptin	PNOC	5368	ENSG00000168081			Pnoc (MGI:105308)
chr8	28345584	28386459	8p21.1	8p21.1	609494	ZNF395, PBF, HDBP2	Zinc finger protein 395	ZNF395	55893	ENSG00000186918			Zfp395 (MGI:2682318)
chr8	28428407	28490317	8p21.1	8p21.1	608519	FBXO16, FBX16	F-box only protein 16	FBXO16	157574	ENSG00000214050	?8p12		Fbxo16 (MGI:1354706)
chr8	28494204	28574267	8p21	8p21.1	606143	FZD3	Frizzled, Drosophila, homolog of, 3	FZD3	7976	ENSG00000104290			Fzd3 (MGI:108476)
chr8	28607735	28753689	8p21	8p21.1	605744	EXTL3, EXTR1, ISDNA	Exostosin-like 3	EXTL3	2137	ENSG00000012232		Immunoskeletal dysplasia with neurodevelopmental abnormalities, 617425 (3), Autosomal recessive	Extl3 (MGI:1860765)
chr8	28767657	28890225	8p21.1	8p21.1	611352	INTS9, INT9, RC74	Integrator complex subunit 9	INTS9	55756	ENSG00000104299			Ints9 (MGI:1098533)
chr8	29000000	105100000	8p12-q22		611073	AD12	Alzheimer disease 12		100188830		max lod at D8S1119	{Alzheimer disease 12}, 611073 (2)	
chr8	29000000	36700000	8p12		612348	THPH9	Thrombophilia due to decreased release of tissue plasminogen activator					?Thrombophilia due to decreased release of tissue plasminogen (1)	
chr8	29067277	29263384	8p12	8p12	607350	KIF13B, GAKIN, KIAA0639	Kinesin family member 13B	KIF13B	23303	ENSG00000197892			Kif13b (MGI:1098265)
chr8	29333061	29350749	8p12-p11	8p12	602747	DUSP4, MKP2, HVH2	Dual-specificity phosphatase-4 (MAP kinase phosphatase-2)	DUSP4	1846	ENSG00000120875			Dusp4 (MGI:2442191)
chr8	30063011	30083207	8p12	8p12	614768	TMEM66, SARAF	Transmembrane protein 66	SARAF	51669	ENSG00000133872			Saraf (MGI:1915137)
chr8	30095405	30137705	8p21.2-p21.1	8p12	607338	LEPROTL1	Leptin receptor overlapping transcript-like 1	LEPROTL1	23484	ENSG00000104660			Leprotl1 (MGI:1915442)
chr8	30131453	30148767	8p12	8p12	611940	MBOAT4, GOAT	Membrane-bound O-acetyltransferase domain-containing 4	MBOAT4	619373	ENSG00000177669			Mboat4 (MGI:2685017)
chr8	30156296	30183638	8p12-p11	8p12	612963	DCTN6, WS3, P27	Dynactin 6	DCTN6	10671	ENSG00000104671			Dctn6 (MGI:1343154)
chr8	30384500	30572260	8p12-p11	8p12	601558	RBPMS	RNA-binding protein gene with multiple splicing	RBPMS	11030	ENSG00000157110			Rbpms (MGI:1334446)
chr8	30578317	30658240	8p21-p12	8p12	189964	GTF2E2, TTD6	General transcription factor IIE, polypeptide 2, beta subunit, 34kD	GTF2E2	2961	ENSG00000197265		Trichothiodystrophy 6, nonphotosensitive, 616943 (3), Autosomal recessive	Gtf2e2 (MGI:1915403)
chr8	30678060	30727998	8p21.1	8p12	138300	GSR	Glutathione reductase	GSR	2936	ENSG00000104687		Hemolytic anemia due to glutathione reductase deficiency (1)	Gsr (MGI:95804)
chr8	30729130	30767005	8p12-p11.2	8p12	602155	UBXN8, D8S2298E, REP8	UBX domain protein 8	UBXN8	7993	ENSG00000104691			Ubxn8 (MGI:1337129)
chr8	30785609	30812835	8p12-p11.2	8p12	176916	PPP2CB	Protein phosphatase-2 (formerly 2A), catalytic subunit, beta isoform	PPP2CB	5516	ENSG00000104695	pseudogene on 16		Ppp2cb (MGI:1321161)
chr8	30831543	30913011	Chr.8	8p12	605795	TEX15	Testis-expressed gene 15	TEX15	56154	ENSG00000133863			Tex15 (MGI:1934816)
chr8	31033261	31175870	8p12-p11.2	8p12	604611	RECQL2, RECQ3, WRN	DNA helicase, RecQ-like 2	WRN	7486	ENSG00000165392		Werner syndrome, 277700 (3), Autosomal recessive	Wrn (MGI:109635)
chr8	31639221	32771715	8p22-p11	8p12	142445	NRG1, HGL, HRGA, ARIA	Neuregulin 1 (heregulin, alpha, 45kD; ERBB2 p185-activator)	NRG1	3084	ENSG00000157168		{?Schizophrenia, susceptibility to}, 603013 (1)	
chr8	33308101	33473145	8p12	8p12	616931	FUT10, FUCTX	Fucosyltransferase 10	FUT10	84750	ENSG00000172728			Fut10 (MGI:2384748)
chr8	33498464	33513191	8p12	8p12	614426	TTI2, C8orf41, MRT39	TELO2-interacting protein 2	TTI2	80185	ENSG00000129696		Mental retardation, autosomal recessive 39, 615541 (3), Autosomal recessive	Tti2 (MGI:2384576)
chr8	33513474	33513577	8p12	8p12	616664	SNORD13	Small nucleolar RNA, C/D box, 13	SNORD13	692084				
chr8	35235456	35796549	8p12	8p12	616466	UNC5D, UNC5H4	Unc5. C. elegans, homolog of, D	UNC5D	137970	ENSG00000156687			Unc5d (MGI:2389364)
chr8	36700000	45200000	8p11		613523	SCLL	Chromosome 8p11 myeloproliferative syndrome (stem cell leukemia/lymphoma)				translocation of FGFR1 (8p11) and various partners	Chromosome 8p11 myeloproliferative syndrome, 613523 (4)	
chr8	36784323	36936124	8p11.23	8p11.23	615215	KCNU1, SLO3	Potassium channel, subfamily U, member 1	KCNU1	157855	ENSG00000215262			Kcnu1 (MGI:1202300)
chr8	37695750	37700020	8p11.23	8p11.23	617045	ZNF703, ZEPPO1, NLZ1	Zinc finger protein 703	ZNF703	80139	ENSG00000183779			Zfp703 (MGI:2662729)
chr8	37736578	37757800	8p11.2	8p11.23	611605	ERLIN2, SPFH2, C8orf2, SPG18	Endoplasmic reticulum lipid raft-associated protein 2	ERLIN2	11160	ENSG00000147475		Spastic paraplegia 18, autosomal recessive, 611225 (3), Autosomal recessive	Erlin2 (MGI:2387215)
chr8	37762545	37779767	8p11.2	8p11.23	604436	PROSC, EPVB6D	Proline synthetase cotranscribed, bacteria, homolog of	PLPBP	11212	ENSG00000147471		Epilepsy, early-onset, vitamin B6-dependent, 617290 (3), Autosomal recessive	Plpbp (MGI:1891207)
chr8	37796882	37843985	8p12	8p11.23	606823	ADGRA2, GPR124, TEM5, KIAA1531	Adhesion G protein-coupled receptor A2	ADGRA2	25960	ENSG00000020181			Adgra2 (MGI:1925810)
chr8	37843879	37849912	8p11.23	8p11.23	607013	BRF2, BRFU, TFIIIB50	BRF2 subunit of RNA polymerase III transcription initiation factor	BRF2	55290	ENSG00000104221			Brf2 (MGI:1913903)
chr8	37858946	37899496	8p11.22	8p11.23	608737	RAB11FIP1, RCP	RAB11 family-interacting protein 1	RAB11FIP1	80223	ENSG00000156675			Rab11fip1 (MGI:1923017)
chr8	37962994	37966665	8p12-p11.2	8p11.23	109691	ADRB3	Adrenergic, beta-3-, receptor	ADRB3	155	ENSG00000188778		{Obesity, susceptibility to}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Adrb3 (MGI:87939)
chr8	38030501	38060364	8p12	8p11.23	602223	EIF4EBP1, 4EBP1	Eukaryotic translation initiation factor-4E binding protein-1	EIF4EBP1	1978	ENSG00000187840			Eif4ebp1 (MGI:103267)
chr8	38104964	38140079	8p11.2	8p11.23	604782	ASH2L, ASH2L2, ASH2L1	ASH2, Drosophila, homolog of	ASH2L	9070	ENSG00000129691			Ash2l (MGI:1344416)
chr8	38142699	38151081	8p11.2	8p11.23	600617	STAR	Steroidogenic acute regulatory protein	STAR	6770	ENSG00000147465		Lipoid adrenal hyperplasia, 201710 (3), Autosomal recessive	Star (MGI:102760)
chr8	38163320	38176729	8p11.23	8p11.23	607281	LSM1	LSM1 protein	LSM1	27257	ENSG00000175324			Lsm1 (MGI:1914457)
chr8	38176587	38213300	8p11.23	8p11.23	603884	BAG4, SODD	Bcl2-associated athanogene 4	BAG4	9530	ENSG00000156735			Bag4 (MGI:1914634)
chr8	38231490	38273921	8p11.23	8p11.23	615003	DDHD2, KIAA0725, SPG54	DDHD domain-containing protein 2	DDHD2	23259	ENSG00000085788		Spastic paraplegia 54, autosomal recessive, 615033 (3), Autosomal recessive	Ddhd2 (MGI:1919358)
chr8	38261789	38269434	8p11.23	8p11.23	610626	PLPP5, PPAPDC1B, HTPAP	Phospholipid phosphatase 5	PLPP5	84513	ENSG00000147535			Plpp5 (MGI:1919160)
chr8	38275041	38382271	8p12	8p11.23	607083	NSD3, WHSC1L1	Nuclear receptor-binding SET domain protein 3	NSD3	54904	ENSG00000147548	pseudogene on 17q21; fusion partner with NUP98 in AML	Leukemia, acute myeloid, 601626 (3), Autosomal dominant	Nsd3 (MGI:2142581)
chr8	38411137	38468833	8p11.2-p11.1	8p11.23	136350	FGFR1, FLT2, OGD, KAL2, HH2, HRTFDS, ECCL	Fibroblast growth factor receptor-1 (fms-related tyrosine kinase-2)	FGFR1	2260	ENSG00000077782	fused with BCR, CEP1, FOP, FIM in hematologic malignancies	Encephalocraniocutaneous lipomatosis, 613001 (3), Somatic mosaicism; Hartsfield syndrome, 615465 (3), Autosomal dominant; Hypogonadotropic hypogonadism 2 with or without anosmia, 147950 (3), Autosomal dominant; Jackson-Weiss syndrome, 123150 (3), Autosomal dominant; Osteoglophonic dysplasia, 166250 (3), Autosomal dominant; Pfeiffer syndrome, 101600 (3), Autosomal dominant; Trigonocephaly 1, 190440 (3), Autosomal dominant	Fgfr1 (MGI:95522)
chr8	38728185	38853029	8p11	8p11.22	605301	TACC1	Transforming, acidic, coiled-coil-containing protein-1	TACC1	6867	ENSG00000147526			Tacc1 (MGI:2443510)
chr8	38901234	38973911	Chr.8	8p11.22	607773	PLEKHA2, TAPP2	Pleckstrin homology domain-containing protein, family A, member 2	PLEKHA2	59339	ENSG00000169499			Plekha2 (MGI:1928144)
chr8	38974148	38988661	8p11.23	8p11.22	610700	HTRA4	HTRA serine peptidase 4	HTRA4	203100	ENSG00000169495			Htra4 (MGI:3036260)
chr8	38988807	38997138	8p11.22	8p11.22	610081	TM2D2, BLP1	TM2 domain-containing protein 2	TM2D2	83877	ENSG00000169490			Tm2d2 (MGI:1916992)
chr8	38996766	39105260	8p11.23	8p11.22	602713	ADAM9, MDC9, MCMP, CORD9	A disintegrin and metalloproteinase domain 9	ADAM9	8754	ENSG00000168615		Cone-rod dystrophy 9, 612775 (3)	Adam9 (MGI:105376)
chr8	39743734	39838288	8p11.2	8p11.22	601533	ADAM2, FTNB, PH30, CRYN1, CRYN2	A disintegrin and metalloproteinase domain 2 (fertilin, beta)	ADAM2	2515	ENSG00000104755			Adam2 (MGI:1340894)
chr8	39913808	39928789	8p12-p11	8p11.21	147435	IDO1, INDO, IDO	Indoleamine 2,3-dioxygenase	IDO1	3620	ENSG00000131203			Ido1 (MGI:96416)
chr8	39934954	40016390	8p12	8p11.21	612129	IDO2, INDOL1	Indoleamine 2,3-dioxygenase 2	IDO2	169355	ENSG00000188676			Ido2 (MGI:2142489)
chr8	40153467	40155307	8p11.2	8p11.21	607702	TCIM, C8orf4	Transcriptional and immune response regulator	TCIM	56892	ENSG00000176907			Tcim (MGI:1916318)
chr8	41261956	41309470	8p12-p11.1	8p11.21	604156	SFRP1, FRP, SARP2	Secreted frizzled-related protein 1	SFRP1	6422	ENSG00000104332			Sfrp1 (MGI:892014)
chr8	41529204	41545045	8p11.21	8p11.21	610611	GINS4, SLD5	GINS complex subunit 4	GINS4	84296	ENSG00000147536			Gins4 (MGI:1923847)
chr8	41578187	41625000	8p11.21	8p11.21	608143	AGPAT6, LPAATZ	1-acylglycerol-3-phosphate O-acyltransferase 6	GPAT4	137964	ENSG00000158669			Gpat4 (MGI:2142716)
chr8	41645176	41650817	8p11.2	8p11.21	610772	NKX6-3, NKX6.3	NK6, Drosophila, homolog of	NKX6-3	157848	ENSG00000165066			
chr8	41653224	41896761	8p11.2	8p11.21	612641	ANK1, SPH1	Ankyrin-1, erythrocytic	ANK1	286	ENSG00000029534		Spherocytosis, type 1, 182900 (3), Autosomal dominant	Ank1 (MGI:88024)
chr8	41929478	42052025	8p11	8p11.21	601408	KAT6A, MYST3, MOZ, ZNF220, MRD32	K(lysine) acetyltransferase 6A	KAT6A	7994	ENSG00000083168		Mental retardation, autosomal dominant 32, 616268 (3), Autosomal dominant	Kat6a (MGI:2442415)
chr8	42152945	42171182	8p11.2	8p11.21	610469	AP3M2, CLA20	Adaptor-related protein complex 3, mu-2 subunit	AP3M2	10947	ENSG00000070718			Ap3m2 (MGI:1929214)
chr8	42174717	42207723	8p12	8p11.21	173370	PLAT, TPA	Plasminogen activator, tissue type	PLAT	5327	ENSG00000104368		Hyperfibrinolysis, familial, due to increased release of PLAT, 612348 (1); Thrombophilia, familial, due to decreased release of PLAT, 612348 (1)	Plat (MGI:97610)
chr8	42270726	42332652	8p11.2	8p11.21	603258	IKBKB, NFKBIKB, IMD15	Inhibitor of kappa light polypeptide gene enhancer in B cells, kinase of, beta	IKBKB	3551	ENSG00000104365		Immunodeficiency 15, 615592 (3), Autosomal recessive	Ikbkb (MGI:1338071)
chr8	42338451	42371812	8p11.2	8p11.21	174760	POLB	Polymerase (DNA directed), beta	POLB	5423	ENSG00000070501			Polb (MGI:97740)
chr8	42373193	42391321	8p11.2-p11.1	8p11.21	605417	DKK4	Dickkopf, Xenopus, homolog of, 4	DKK4	27121	ENSG00000104371			Dkk4 (MGI:2385299)
chr8	42391623	42405936	8p11.2	8p11.21	610029	VDAC3	Voltage-dependent anion channel 3	VDAC3	7419	ENSG00000078668			Vdac3 (MGI:106922)
chr8	42416461	42542212	8p11.21	8p11.21	158378	SLC20A2, MLVAR, GLVR2, IBGC1	Solute carrier family 20, phosphate transporter, member 2 (murine leukemia virus, amphotropic, receptor for)	SLC20A2	6575	ENSG00000168575		Basal ganglia calcification, idiopathic, 1, 213600 (3), Autosomal dominant	Slc20a2 (MGI:97851)
chr8	42697375	42737406	8p11.2	8p11.21	118508	CHRNB3	Cholinergic receptor, nicotinic, beta polypeptide-3	CHRNB3	1142	ENSG00000147432			Chrnb3 (MGI:106212)
chr8	42752619	42768785	8p11.21	8p11.21	606888	CHRNA6	Cholinergic receptor, neuronal nicotinic, alpha polypeptide 6	CHRNA6	8973	ENSG00000147434			Chrna6 (MGI:106213)
chr8	42836673	42843330	8p11.21	8p11.21	609520	THAP1, DYT6	THAP domain-containing protein 1	THAP1	55145	ENSG00000131931		Dystonia 6, torsion, 602629 (3), Autosomal dominant	Thap1 (MGI:1921004)
chr8	42849636	42897293	8p11.2	8p11.21	614649	RNF170, SNAX1	RING finger protein 170	RNF170	81790	ENSG00000120925		Ataxia, sensory, 1, autosomal dominant, 608984 (3), Autosomal dominant	Rnf170 (MGI:1924983)
chr8	42896889	43030538	8p11.21	8p11.21	607825	HOOK3, HK3	Hook, Drosophila, homolog of, 3	HOOK3	84376	ENSG00000168172			Hook3 (MGI:2443554)
chr8	43056298	43085787	8p22-q11	8p11.21	134635	FNTA	Farnesyltransferase, CAAX box, alpha	FNTA	2339	ENSG00000168522	related FNTAL1 on 11, FNTAL2 on 13		Fnta (MGI:104683)
chr8	43093505	43123179	8p11	8p11.21	615247	POMK, SGK196, MDDGA12, MDDGC12	Protein-O-mannose kinase	POMK	84197	ENSG00000185900	mutation in 1 MDDGC12 family has been reported	Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 12, 615249 (3), Autosomal recessive; ?Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 12, 616094 (3), Autosomal recessive	Pomk (MGI:1921903)
chr8	43140448	43202826	8p11.1	8p11.2-p11.1	610453	HGSNAT, TMEM76, MPS3C, RP73	Heparan-alpha-glucosaminide N-acetyltransferase	HGSNAT	138050	ENSG00000165102		Mucopolysaccharidosis type IIIC (Sanfilippo C), 252930 (3), Autosomal recessive; Retinitis pigmentosa 73, 616544 (3), Autosomal recessive	Hgsnat (MGI:1196297)
chr8	45200000	145138636	8q		600668	CCAL1	Chondrocalcinosis 1	CCAL1	882			Chondrocalcinosis with early-onset osteoarthritis, 600668 (2), Autosomal dominant	
chr8	45200000	145138636	8q		109640	GPB	Glycerol phosphatase, beta-						
chr8	45200000	145138636	8q		606789	HBFQTL4	Fetal hemoglobin quantitative trait locus 4		171515			Fetal hemoglobin quantitative trait locus 4, 606789 (2)	
chr8	45200000	72000000	8q11.1-q13.3		128700	PAFC	Preauricular fistulae, congenital		404715		between D8S532 and D8S279	?Preauricular fistulae, congenital, 128700 (2), Autosomal dominant	
chr8	46840885	46855784	8q11.2	8q11.1	609543	BEYLA	BEYLA gene	LINC00293	497634				
chr8	47200000	69600000	8q11.2-q13.2		609197	GCCD3, FGD3, GCCD2	Glucocorticoid deficiency 3		619477		between D8S285 and D8S1718	Glucocorticoid deficiency 3, 609197 (2), Autosomal recessive	
chr8	47260877	47736000	8q11.21	8q11.21	615384	SPIDR, KIAA0146	Scaffolding protein involved in DNA repair	SPIDR	23514	ENSG00000164808			Spidr (MGI:1924834)
chr8	47736913	47738163	8p11.2-p11.1	8q11.21	116898	CEBPD	CCAAT/enhancer-binding protein (C/EBP), delta	CEBPD	1052	ENSG00000221869	earlier mapped to 8q11		Cebpd (MGI:103573)
chr8	47773107	47960182	8q11	8q11.21	600899	PRKDC, HYRC1, DNPK1, IMD26	Protein kinase, DNA-activated, catalytic polypeptide (hyperradiosensitivity of murine SCID mutation, complementing-1)	PRKDC	5591	ENSG00000253729		Immunodeficiency 26, with or without neurologic abnormalities, 615966 (3), Autosomal recessive	Prkdc (MGI:104779)
chr8	47960202	47978159	8q11.2	8q11.21	602638	MCM4, NKGCD, NKCD, IMD54	Minichromosome maintenance deficient, S. cerevisiae, homolog of, 4	MCM4	4173	ENSG00000104738		Immunodeficiency 54, 609981 (3), Autosomal recessive	Mcm4 (MGI:103199)
chr8	47997526	48063541	8q11.21	8q11.21	603001	UBE2V2, UEV2, DDVIT1, EDPF1, MMS2	Ubiquitin-conjugating enzyme E2 variant 2	UBE2V2	7336	ENSG00000169139			Ube2v2 (MGI:1917870)
chr8	48917676	48921439	8q11	8q11.21	602150	SNAI2, SLUG, WS2D	snail, Drosophila, homolog of, 2 (Neural crest transcription factor SLUG)	SNAI2	6591	ENSG00000019549		Piebaldism, 172800 (3), Autosomal dominant; Waardenburg syndrome, type 2D, 608890 (3), Autosomal recessive	Snai2 (MGI:1096393)
chr8	49909725	50796655	8q11	8q11.21	608714	SNTG1, SYN4	Syntrophin, gamma-1	SNTG1	54212	ENSG00000147481	implicated in idiopathic scoliosis		Sntg1 (MGI:1918346)
chr8	51319574	51809444	8q11	8q11.22-q11.23	615904	PXDNL, PMR1, VPO2	Peroxidasin, Drosophila, homolog-like	PXDNL	137902	ENSG00000147485			
chr8	52110831	52409878	8q11.2	8q11.23	617155	ST18, ZNF387, KIAA0535	Suppression of tumorigenicity 18	ST18	9705	ENSG00000147488			St18 (MGI:2446700)
chr8	52622457	52714465	8q11	8q11.23	606837	RB1CC1, CC1, KIAA0203	RB1-inducible coiled-coil 1	RB1CC1	9821	ENSG00000023287		Breast cancer, somatic, 114480 (3)	Rb1cc1 (MGI:1341850)
chr8	52939907	52940893	8q11.23	8q11.23	600730	NPBWR1, GPR7	Neuropeptides B and W receptor 1	NPBWR1	2831	ENSG00000183729	previously assigned to 10q11.2-q21.1 by FISH		Npbwr1 (MGI:891989)
chr8	53225715	53251696	8q11.2	8q11.23	165196	OPRK1	Opiate receptor, kappa-1	OPRK1	4986	ENSG00000082556			Oprk1 (MGI:97439)
chr8	53966553	54022455	8q11.23	8q11.23	601425	TCEA1, TF2S, GTF2S	Transcription elongation factor A, SII, 1	TCEA1	6917	ENSG00000187735	previously mapped to 3p22-p21.3		Tcea1 (MGI:1196624)
chr8	54046366	54102016	Chr.8	8q11.23	605599	LYPLA1	Lysophospholipase I	LYPLA1	10434	ENSG00000120992			Lypla1 (MGI:1344588)
chr8	54135220	54148513	8q11.2-q13	8q11.23	611828	MRPL15	Mitochondrial ribosomal protein L15	MRPL15	29088	ENSG00000137547			Mrpl15 (MGI:1351639)
chr8	54457934	54460895	8q12-q13	8q11.23	610928	SOX17, VUR3	SRY-box 17	SOX17	64321	ENSG00000164736		Vesicoureteral reflux 3, 613674 (3), Autosomal dominant	Sox17 (MGI:107543)
chr8	54509447	54630833	8q11-q13	8q11.2-q12.1	603937	RP1, ORP1	Oxygen-regulated photoreceptor protein-1 (retinitis pigmentosa-1)	RP1	6101	ENSG00000104237		Retinitis pigmentosa 1, 180100 (3), Autosomal recessive, Autosomal dominant	Rp1 (MGI:1341105)
chr8	54600000	60600000	8q12.1		612587	ANIB10	Aneurysm, intracranial berry, 10		100271689		associated with rs10958409	{Aneurysm, intracranial berry, 10}, 612587 (2)	
chr8	54600000	65100000	8q12		608765	IS3	Scoliosis, isolated, susceptibility to, 3					{Scoliosis, isolated, susceptibility to, 3}, 608765 (2)	
chr8	54600000	72000000	8q12-q13		611046	MTBS2	Mycobacterium tuberculosis, susceptibility to, 2		100188829		max lod at D8S1723	{Mycobacterium tuberculosis, susceptibility to, 2}, 611046 (2)	
chr8	55773231	55826444	8q11	8q12.1	606461	TGS1, NCOA6IP, PIMT	Trimethylguanosine synthase, S. cerevisiae, homolog of	TGS1	96764	ENSG00000137574			Tgs1 (MGI:2151797)
chr8	55876040	56012446	8q13-qter	8q12.1	165120	LYN	Yamaguchi sarcoma viral (v-yes-1) related oncogene homolog	LYN	4067	ENSG00000254087			Lyn (MGI:96892)
chr8	56068179	56074580	8q12.1	8q12.1	603682	RPS20	Ribosomal protein S20	RPS20	6224	ENSG00000008988			Rps20 (MGI:1914677)
chr8	56112941	56113981	8q11	8q12.1	190060	MOS	Oncogene MOS, Moloney murine sarcoma virus	MOS	4342	ENSG00000172680			Mos (MGI:97052)
chr8	56160908	56211326	8q12	8q12.1	603026	PLAG1, SGPA, PSA	Pleomorphic adenoma gene 1	PLAG1	5324	ENSG00000181690	fused with CTNNB1 in SGPA	Adenomas, salivary gland pleomorphic, somatic, 181030 (3)	Plag1 (MGI:1891916)
chr8	56211637	56218797	8q12	8q12.1	611238	CHCHD7	Coiled-coil-helix-coiled-coil-helix domain-containing protein 7	CHCHD7	79145	ENSG00000170791			Chchd7 (MGI:1913683)
chr8	56299647	56320775	8q12.1	8q12.1	608989	RDHE2	Retinal dehydrogenase, epidermal, 2	SDR16C5	195814	ENSG00000170786			Sdr16c5 (MGI:2668443)
chr8	56440953	56446733	8q23-q24	8q12.1	131330	PENK	Proenkephalin	PENK	5179	ENSG00000181195			Penk (MGI:104629)
chr8	56957928	56993873	8q12.1	8q12.1	614010	IMPAD1, GPAPP, IMPA3	Inositol monophosphatase domain-containing protein 1	IMPAD1	54928	ENSG00000104331		Chondrodysplasia with joint dislocations, GPAPP type, 614078 (3), Autosomal recessive	Impad1 (MGI:1915720)
chr8	57994508	58149717	8q12.1	8q12.1	611394	FAM110B, C8orf72	Family with sequence similarity 110, member B	FAM110B	90362	ENSG00000169122			Fam110b (MGI:1916593)
chr8	58411263	58451507	8q12.1	8q12.1	610686	UBXN2B, LOC137886, p37	UBX domain protein 2B	UBXN2B	137886	ENSG00000215114			Ubxn2b (MGI:1915303)
chr8	58490177	58500160	8q11-q12	8q12.1	118455	CYP7A1, CYP7	Cytochrome P450, subfamily VII (cholesterol 7-alpha-monooxygenase), polypeptide 1	CYP7A1	1581	ENSG00000167910			Cyp7a1 (MGI:106091)
chr8	58552923	58582859	8q12.1	8q12.1	602217	SDCBP, TACIP18, MDA9	Syndecan-binding protein	SDCBP	6386	ENSG00000137575			Sdcbp (MGI:1337026)
chr8	58583503	58659844	8q12-q13	8q12.1	603043	NSMAF, FAN	Neutral sphingomyelinase activation-associated factor	NSMAF	8439	ENSG00000035681			Nsmaf (MGI:1341864)
chr8	58805417	59119292	8q12.1	8q12.1	606863	TOX, KIAA0808	Thymus high mobility group box protein, mouse, homolog of	TOX	9760	ENSG00000198846			Tox (MGI:2181659)
chr8	60185419	60281422	8q11-q12	8q12.1	114815	CA8, CALS, CARP, CAMRQ3	Carbonic anhydrase VIII	CA8	767	ENSG00000178538		Cerebellar ataxia and mental retardation with or without quadrupedal locomotion 3, 613227 (3), Autosomal recessive	Car8 (MGI:88253)
chr8	60516909	60623643	8q12.1	8q12.1-q12.2	179509	RAB2, RAB2A	Ras-associated protein RAB2	RAB2A	5862	ENSG00000104388			Rab2a (MGI:1928750)
chr8	60600000	85900000	8q12.2-q21.2		600257	DEL8q12q21, C8DELq12q21	Bor-Duane hydrocephalus contiguous gene syndrome (chromosome 8q12.1-q21.2 deletion syndrome)					Bor-Duane hydrocephalus contiguous gene syndrome, 600257 (4), Autosomal dominant	
chr8	60600000	85900000	8q12.2-q21.2		123155	HDCPH1	Hydrocephalus, autosomal dominant					?Hydrocephalus, autosomal dominant, 123155 (2), Autosomal dominant	
chr8	60678743	60868027	8q12.1	8q12.2	608892	CHD7, HH5	Chromodomain helicase DNA binding protein 7	CHD7	55636	ENSG00000171316		CHARGE syndrome, 214800 (3), Autosomal dominant; Hypogonadotropic hypogonadism 5 with or without anosmia, 612370 (3), Autosomal dominant	Chd7 (MGI:2444748)
chr8	60964832	61501644	8q12.2	8q12.2-q12.3	611292	CLVS1, RLBP1L1, CRALBPL	Clavesin 1	CLVS1	157807	ENSG00000177182			Clvs1 (MGI:1921688)
chr8	61500555	61714639	8q12.1	8q12.3	600582	ASPH, HAAH, FDLAB	Aspartate beta-hydroxylase (junctin; junctate)	ASPH	444	ENSG00000198363		Traboulsi syndrome, 601552 (3), Autosomal recessive	Asph (MGI:1914186)
chr8	62248941	62999651	8q12.13	8q12.3	612872	NKAIN3	Na+/K+ transporting ATPase-interacting 3	NKAIN3	286183				Nkain3 (MGI:2444830)
chr8	63015078	63039050	8q12.3	8q12.3	601509	GGH	Gamma-glutamyl hydrolase	GGH	8836	ENSG00000137563			Ggh (MGI:1329035)
chr8	63059487	63086522	8q13.1-q13.3	8q12.3	600415	TTPA, TTP1, AVED	Tocopherol, alpha, transfer protein	TTPA	7274	ENSG00000137561		Ataxia with isolated vitamin E deficiency, 277460 (3), Autosomal recessive	Ttpa (MGI:1354168)
chr8	64580237	64583633	8q13	8q12.3	613483	BHLHE22, BHLHB5, BETA3	Basic helix-loop-helix family, member E22	BHLHE22	27319	ENSG00000180828			Bhlhe22 (MGI:1930001)
chr8	64586592	64798790	8q21.3	8q12.3	603711	CYP7B1, CBAS3, SPG5A	Cytochrome P450, subfamily VIIB (oxysterol 7-alpha-hydroxylase), polypeptide 1	CYP7B1	9420	ENSG00000172817		Bile acid synthesis defect, congenital, 3, 613812 (3), Autosomal recessive; Spastic paraplegia 5A, autosomal recessive, 270800 (3), Autosomal recessive	Cyp7b1 (MGI:104978)
chr8	65100000	116700000	8q13-q23		607731	CMT2H	Charcot-Marie-Tooth disease, axonal, type 2H		619496		between D8S1807 and D8S548	Charcot-Marie-Tooth disease, axonal, type 2H, 607731 (2), Autosomal recessive	
chr8	65100000	72000000	8q13		600383	DEL8q13, C8DELq13	Mesomelia-synostoses syndrome (Chromosome 8q13 deletion syndrome)				contiguous gene deletion of SULF1 and SLCO5A1	Mesomelia-synostoses syndrome, 600383 (4), Autosomal dominant	
chr8	65100000	72000000	8q13		126800	DURS1, DUS	Duane retraction syndrome 1	DURS1	10674			Duane retraction syndrome 1, 126800 (2), Autosomal dominant	
chr8	65100000	92300000	8q13-q21		121210	FEB1	Febrile seizures, familial, 1	FEB1	2233			Febrile seizures, familial, 1, 121210 (2), Autosomal dominant	
chr8	65714333	65841733	8q13-q22	8q13.1	171885	PDE7A, HCP1	Phosphodiesterase-7A	PDE7A	5150	ENSG00000205268			Pde7a (MGI:1202402)
chr8	66014977	66101242	8q13.1	8q13.1	613945	DNAJC5B	DNAJ/HSP40 homolog, subfamily C, member 5, beta	DNAJC5B	85479	ENSG00000147570			Dnajc5b (MGI:1913576)
chr8	66112666	66175484	8q13.1	8q13.1	606469	TRIM55, RNF29, MURF2	Tripartite motif containing 55	TRIM55	84675	ENSG00000147573			Trim55 (MGI:3036269)
chr8	66176376	66178644	8q13	8q13.1	122560	CRH	Corticotropin releasing hormone	CRH	1392	ENSG00000147571			Crh (MGI:88496)
chr8	66432482	66468808	8q13.1	8q13.1	611083	ADHFE1, HOT, ADH8	Alcohol dehydrogenase, iron-containing, 1	ADHFE1	137872	ENSG00000147576			Adhfe1 (MGI:1923437)
chr8	66562174	66613248	8q22	8q13.1	159405	MYBL1	Avian myeloblastosis viral (v-myb) oncogene homolog like-1	MYBL1	4603	ENSG00000185697			Mybl1 (MGI:99925)
chr8	66630252	66667216	8q13	8q13.1	611745	VCPIP1 VCIP135, KIAA1850	VCP/p47 complex-interacting protein 1	VCPIP1	80124	ENSG00000175073			Vcpip1 (MGI:1917925)
chr8	66712417	66862021	8q12.3-q13.1	8q13.1	607591	SGK3, SGKL, CISK	Serum/glucocorticoid-regulated kinase 3	SGK3	23678	ENSG00000104205			Sgk3 (MGI:2182368)
chr8	66870748	66926435	8q13.1	8q13.1	617545	MCMDC2, C8orf45	Minichromosome maintenance domain-containing protein 2	MCMDC2	157777	ENSG00000178460			Mcmdc2 (MGI:3045334)
chr8	66921689	66925540	8q13	8q13.1	612215	SNHG6, U87HG	Small nucleolar RNA host gene 6	SNHG6	641638				
chr8	66922473	66922548	8q13	8q13.1	612216	SNORD87, U87	Small nucleolar RNA, C/D box, 87	SNORD87	641648		within intron 2 of SNHG6		
chr8	66987675	67028550	8q13.1	8q13.1	617720	PPP1R42, TLRR, LRRC67	Protein phosphatase 1, rebulatory subunit 42	PPP1R42	286187	ENSG00000178125			Ppp1r42 (MGI:1921138)
chr8	67043078	67062326	8q13.2	8q13.1	604850	COPS5, JAB1, SGN5	COP9, subunit 5	COPS5	10987	ENSG00000121022			Cops5 (MGI:1349415)
chr8	67062416	67198002	8q13.2	8q13.1-q13.2	611654	CSPP1, CSPP, JBTS21	Centrosome spindle pole-associated protein 1	CSPP1	79848	ENSG00000104218		Joubert syndrome 21, 615636 (3), Autosomal recessive	Cspp1 (MGI:2681832)
chr8	67174297	67343823	8q13	8q13.2	604141	ARFGEF1, ARFGEP1, BIG1, P200	ADP-ribosylation factor guanine nucleotide exchange factor 1	ARFGEF1	10565	ENSG00000066777			Arfgef1 (MGI:2442988)
chr8	67422169	67747113	8q13	8q13.2	609562	CPA6, CPAH, ETL5, FEB11	Carboxypeptidase A6	CPA6	57094	ENSG00000165078		Epilepsy, familial temporal lobe, 5, 614417 (3), Autosomal recessive, Autosomal dominant; Febrile seizures, familial, 11, 614418 (3), Autosomal recessive	Cpa6 (MGI:3045348)
chr8	67951917	68237032	8q13.1-q13.2	8q13.2	612139	PREX2, DEPDC2	Phosphatidylinositol 3,4,5-trisphosphate-dependent RAC exchanger 2	PREX2	80243	ENSG00000046889			Prex2 (MGI:1923385)
chr8	69466623	69660911	8q13.3	8q13.2-q13.3	610012	SULF1, KIAA1077	Sulfatase 1	SULF1	23213	ENSG00000137573			Sulf1 (MGI:2138563)
chr8	69667045	69835063	8q13.3	8q13.3	613543	SLCO5A1, OATPRP4, SLC21A15, OATPJ, OATP5A1	Solute carrier organic anion transporter family, member 5A1	SLCO5A1	81796	ENSG00000137571			Slco5a1 (MGI:2443431)
chr8	70051612	70071326	8q13.3	8q13.3	611781	PRDM14, PFM11	PR domain-containing protein 14	PRDM14	63978	ENSG00000147596			Prdm14 (MGI:3588194)
chr8	70109761	70405389	8q13.2-q13.3	8q13.3	601993	NCOA2, GRIP1, TIF2, SRC2	Nuclear receptor coactivator 2	NCOA2	10499	ENSG00000140396			Ncoa2 (MGI:1276533)
chr8	70573217	70608458	Chr.8	8q13.3	605190	TRAM	Translocating chain-associating membrane protein	TRAM1	23471	ENSG00000067167			Tram1 (MGI:1919515)
chr8	71197432	71548129	8q13.3	8q13.3	601653	EYA1, BOR, BOS1, OFC1	Eyes absent, Drosophila, homolog of, 1	EYA1	2138	ENSG00000104313	mutation identified in 1 OFC1 family	Anterior segment anomalies with or without cataract, 602588 (3), Autosomal dominant; Branchiootic syndrome 1, 602588 (3), Autosomal dominant; Branchiootorenal syndrome 1, with or without cataracts, 113650 (3), Autosomal dominant; ?Otofaciocervical syndrome, 166780 (3), Autosomal dominant	Eya1 (MGI:109344)
chr8	71841541	71844495	8q13.3	8q13.3	603628	MSC, ABF1, MYOR	Musculin	MSC	9242	ENSG00000178860			Msc (MGI:1333884)
chr8	72000000	74600000	8q21.11		614230	DEL8q21.11, C8DELq21.11	Chromosome 8q21.11 deletion syndrome				contiguous gene deletion; minimal region (GRCh37, 8:77226464-77766239	Chromosome 8q21.11 deletion syndrome, 614230 (4), Autosomal dominant, Isolated cases	
chr8	72000000	145138636	8q21.1-qter		138480	GLYB	Glycine auxotroph B, complementation of hamster	GLYB	2757		gly(-)B		
chr8	72000000	105100000	8q21-q22		258500	OPA6	Optic atrophy 6	OPA6	777778		between D8S1702 and D8S1794	Optic atrophy 6, 258500 (2), Autosomal recessive	
chr8	72021250	72094884	8q13	8q21.11	604775	TRPA1, ANKTM1, FEPS1	Transient receptor potential cation channel, subfamily A, member 1 (ankyrin-like protein with transmembrane domains 1)	TRPA1	8989	ENSG00000104321	mutation identified in 1 FEPS1 family	?Episodic pain syndrome, familial, 1, 615040 (3), Autosomal dominant	Trpa1 (MGI:3522699)
chr8	72537390	72945889	Chr.8	8q21.11	607738	KCNB2, KV2.2	Potassium channel, voltage-gated, shab-related subfamily, member 2	KCNB2	9312	ENSG00000182674			Kcnb2 (MGI:99632)
chr8	73008855	73047751	8q13	8q21.11	600951	TERF1, TRF1	Telomeric repeat binding factor 1	TERF1	7013	ENSG00000147601			Terf1 (MGI:109634)
chr8	73290638	73294425	8q	8q21.11	604166	RPL7	Ribosomal protein L7	RPL7	6129	ENSG00000147604	pseudogene on chr.5		Rpl7 (MGI:98073)
chr8	73294601	73325284	Chr.8	8q21.11	607599	RDH10	Retinol dehydrogenase 10	RDH10	157506	ENSG00000121039			Rdh10 (MGI:1924238)
chr8	73420368	73747707	8q13-q21.1	8q21.11	605920	STAU2	Staufen, Drosophila, homolog of, 2	STAU2	27067	ENSG00000040341			Stau2 (MGI:1352508)
chr8	73780096	73878909	8q13-q21.1	8q21.11	614277	UBE2W, UBC16	Ubiquitin-conjugating enzyme 2W	UBE2W	55284	ENSG00000104343			Ube2w (MGI:1914049)
chr8	73945137	73972286	Chr.8	8q21.11	600788	TCEB1	Transcription elongation factor B, polypeptide 1, 15kD (elongin C)	ELOC	6921	ENSG00000154582			Eloc (MGI:1915173)
chr8	73976141	73982782	8q21.11	8q21.11	612418	TMEM70, MC5DN2	Transmembrane protein 70	TMEM70	54968	ENSG00000175606		Mitochondrial complex V (ATP synthase) deficiency, nuclear type 2, 614052 (3), Autosomal recessive	Tmem70 (MGI:1915068)
chr8	73991274	74099806	8q21.11	8q21.11	605243	LY96, MD2	Lymphocyte antigen 96	LY96	23643	ENSG00000154589			Ly96 (MGI:1341909)
chr8	74234699	74321544	8q21	8q21.11	605266	JPH1, JP1, CMT2K	Junctophilin 1	JPH1	56704	ENSG00000104369	mutation identified in 1 CMT2K family	?Charcot-Marie-Tooth disease, axonal, autosomal dominant, type 2K, 607831 (3), Autosomal recessive, Autosomal dominant	Jph1 (MGI:1891495)
chr8	74350382	74488866	8q21.11	8q21.11	606598	GDAP1, CMT4A, CMT2K, CMTRIA	Ganglioside-induced differentiation-associated protein 1	GDAP1	54332	ENSG00000104381		Charcot-Marie-Tooth disease, axonal, type 2K, 607831 (3), Autosomal recessive, Autosomal dominant; Charcot-Marie-Tooth disease, axonal, with vocal cord paresis, 607706 (3), Autosomal recessive; Charcot-Marie-Tooth disease, recessive intermediate, A, 608340 (3), Autosomal recessive; Charcot-Marie-Tooth disease, type 4A, 214400 (3), Autosomal recessive	Gdap1 (MGI:1338002)
chr8	74700000	83500000	8q21.13		612578	STQTL15	Stature quantitative trait locus 15		100270801		associated with rs2220456	{Stature QTL 15}, 612578 (2)	
chr8	74824536	74855043	8q21.13	8q21.13	607076	PI15, P25TI	Protease inhibitor 15	PI15	51050	ENSG00000137558			Pi15 (MGI:1934659)
chr8	75407566	75566842	8q21	8q21.13	605966	HNF4G	Hepatocyte nuclear factor 4-gamma	HNF4G	3174	ENSG00000164749			Hnf4g (MGI:1353604)
chr8	76681218	76867284	8q21.12	8q21.13	606940	ZFHX4, ZFH4	Zinc finger homeobox 4	ZFHX4	79776	ENSG00000091656		?Ptosis, congenital, 178300 (2), Autosomal dominant	Zfhx4 (MGI:2137668)
chr8	76980257	77001043	8q21.1	8q21.13	170993	PEX2, PAF1, PMP35, PBD5A, PBD5B, PXMP3	Peroxisome biogenesis factor 2	PEX2	5828	ENSG00000164751		Peroxisome biogenesis disorder 5A (Zellweger), 614866 (3), Autosomal recessive; Peroxisome biogenesis disorder 5B, 614867 (3), Autosomal recessive	Pex2 (MGI:107486)
chr8	78516100	78605266	Chr.8	8q21.13	606059	PKIA	Protein kinase, cAMP-dependent catalytic, inhibitor alpha	PKIA	5569	ENSG00000171033			Pkia (MGI:104747)
chr8	78675869	78806829	8q12-q13	8q21.13	146660	IL7	Interleukin-7	IL7	3574	ENSG00000104432			Il7 (MGI:96561)
chr8	79610813	79666174	8q21.13	8q21.13	600621	STMN2, SCGN10, SCG10	Stathmin-like 2	STMN2	11075	ENSG00000104435			Stmn2 (MGI:98241)
chr8	79918859	80030270	8q21.1-q21.3	8q21.13	611990	MRPS28, MRPS35	Mitochondrial ribosomal protein S28	MRPS28	28957	ENSG00000147586			Mrps28 (MGI:1913480)
chr8	80034867	80171658	8q21	8q21.13	604068	TPD52, D52	Tumor protein D52	TPD52	7163	ENSG00000076554			Tpd52 (MGI:107749)
chr8	80967809	81112067	Chr.8	8q21.13	605767	PAG	Phosphoprotein associated with glycosphingolipid-enriched microdomains	PAG1	55824	ENSG00000076641			Pag1 (MGI:2443160)
chr8	81280482	81284776	8q21.13	8q21.13	605168	FABP5, PAFABP, EFABP	Fatty acid-binding protein 5	FABP5	2171	ENSG00000164687			Fabp5 (MGI:101790)
chr8	81440325	81447522	8q21.3-q22.1	8q21.13	170715	PMP2	Peripheral myelin protein-2	PMP2	5375	ENSG00000147588	not involved in CMT4A		Pmp2 (MGI:102667)
chr8	81478496	81483237	8q21	8q21.13	600434	FABP4	Fatty acid-binding protein-4, adipocyte	FABP4	2167	ENSG00000170323			Fabp4 (MGI:88038)
chr8	81656915	81686353	8q21.13-q21.3	8q21.13	602064	IMPA1, MRT59	Inositol(myo)-1(or 4)-monophosphatase-1	IMPA1	3612	ENSG00000133731		Mental retardation, autosomal recessive 59, 617323 (3), Autosomal recessive	Impa1 (MGI:1933158)
chr8	81732452	81759514	8q21.12	8q21.13	610899	CHMP4C, SNF7-3	CHMP family, member 4C	CHMP4C	92421	ENSG00000164695			Chmp4c (MGI:1913621)
chr8	81799582	81842325	8q21.13	8q21.13	614903	SNX16	Sorting nexin 16	SNX16	64089	ENSG00000104497			Snx16 (MGI:1921968)
chr8	84182764	84921843	8q21.2	8q21.2	614648	RALYL	RALY-like protein	RALYL	138046	ENSG00000184672			Ralyl (MGI:1924147)
chr8	85107087	85146079	8q21.2	8q21.2	617791	LRRCC1, CLERK, KIAA1764	Leucine-rich repeat- and coiled-coil domain-containing centrosomal protein 1	LRRCC1	85444	ENSG00000133739			Lrrcc1 (MGI:1918960)
chr8	85177383	85214517	8q21.2	8q21.2	600967	E2F5	E2F transcription factor 5	E2F5	1875	ENSG00000133740			E2f5 (MGI:105091)
chr8	85328228	85378153	8q22	8q21.2	114800	CA1	Carbonic anhydrase I	CA1	759	ENSG00000133742			Car1 (MGI:88268)
chr8	85438826	85449039	8q22	8q21.2	114750	CA3	Carbonic anhydrase III	CA3	761	ENSG00000164879			Car3 (MGI:88270)
chr8	85463901	85481491	8q22	8q21.2	611492	CA2	Carbonic anhydrase II	CA2	760	ENSG00000104267	CA1, CA2 linked in monkey and mouse	Osteopetrosis, autosomal recessive 3, with renal tubular acidosis, 259730 (3), Autosomal recessive	Car2 (MGI:88269)
chr8	86213908	86230374	8q21.3	8q21.3	617256	SLC7A13, AGT1, XAT2	Solute carrier family 7, member 13	SLC7A13	157724	ENSG00000164893			Slc7a13 (MGI:1921337)
chr8	86342659	86468353	8q21	8q21.3	602307	WWP1, TIUL1	WW domain-containing protein 1	WWP1	11059	ENSG00000123124			Wwp1 (MGI:1861728)
chr8	86467054	86514347	8q21.3	8q21.3	611871	FAM82B, RMD1	Family with sequence similarity 82, member B	RMDN1	51115	ENSG00000176623			Rmdn1 (MGI:1913552)
chr8	86514421	86561497	8q21.3	8q21.3	604207	CPNE3, CPN3	Copine III	CPNE3	8895	ENSG00000085719			Cpne3 (MGI:1917818)
chr8	86573607	86743674	8q21-q22	8q21.3	605080	CNGB3, ACHM3, ACHM1	Cyclic nucleotide-gated channel, beta-3	CNGB3	54714	ENSG00000170289		Achromatopsia 3, 262300 (3), Autosomal recessive; Macular degeneration, juvenile, 248200 (3), Autosomal recessive	Cngb3 (MGI:1353562)
chr8	88032008	88327487	8q21	8q21.3	602262	MMP16	Matrix metalloproteinase 16 (membrane-inserted)	MMP16	4325	ENSG00000156103			Mmp16 (MGI:1276107)
chr8	89757746	89791063	8q21.3	8q21.3	603455	RIPK2, CARDIAK, RIP2, RICK	Receptor-interacting serine/threonine kinase 2	RIPK2	8767	ENSG00000104312			Ripk2 (MGI:1891456)
chr8	89901867	89935613	8q21.3	8q21.3	604598	OSGIN2, C8orf1	Oxidative stress-induced growth inhibitor family member 2	OSGIN2	734	ENSG00000164823			Osgin2 (MGI:2384798)
chr8	89933335	89984723	8q21	8q21.3	602667	NBN, NBS1	Nibrin	NBN	4683	ENSG00000104320		Aplastic anemia, 609135 (3); Leukemia, acute lymphoblastic, 613065 (3); Nijmegen breakage syndrome, 251260 (3), Autosomal recessive	Nbn (MGI:1351625)
chr8	90001351	90053632	8q21.3	8q21.3	222745	DECR1	2,4-dienoyl CoA reductase	DECR1	1666	ENSG00000104325			Decr1 (MGI:1914710)
chr8	90058607	90082880	8q21.3-q22.1	8q21.3	114050	CALB1	Calbindin 1, 28kD	CALB1	793	ENSG00000104327			Calb1 (MGI:88248)
chr8	90994270	91040974	8q21.2	8q21.3	609864	TMEM55A	Transmembrane protein 55A	PIP4P2	55529	ENSG00000155099			Tmem55a (MGI:1919769)
chr8	91070195	91087094	8q21.3	8q21.3	612021	OTUD6B, DUBA5, IDDFSDA	OTU domain-containing protein 6B	OTUD6B	51633	ENSG00000155100		Intellectual developmental disorder with dysmorphic facies, seizures, and distal limb anomalies, 617452 (3), Autosomal recessive	Otud6b (MGI:1919451)
chr8	91954966	92103450	8q22	8q21.3	133435	RUNX1T1, CBFA2T1, AML1T1, ETO	unt-related transcription factor 1, translocated to, 1, cyclin D-related	RUNX1T1	862	ENSG00000079102	fused with AML1 in t(8;21)		Runx1t1 (MGI:104793)
chr8	92300000	97900000	8q22.1		151200	DUP8q22.1, C8DUPq22.1	Chromosome 8q22.1 duplication syndrome (Leri pleonosteosis)				duplication of 0.9-1.2 Mb on 8q22.1	Leri pleonosteosis chromosome duplication syndrome, 151200 (4), Autosomal dominant	
chr8	92300000	105100000	8q22		145701	HTC1	Hypertrichosis universalis congenita, Ambras type	HTC1	3341			?Hypertrichosis universalis congenita, Ambras type, 145701 (2), Autosomal dominant	
chr8	92300000	97900000	8q22.1		608156	NMLFS, DEL8q22.1, C8DELq22.1	Nablus mask-like facial syndrome (chromosome 8q22.1 deletion syndrome)					Nablus mask-like facial syndrome, 608156 (4), Autosomal dominant, Isolated cases	
chr8	93700251	93732369	8q22.1	8q22.1	617273	FAM92A, FAM92A1	Family with sequence similarity 92, member A	FAM92A	137392	ENSG00000188343			Fam92a (MGI:1915349)
chr8	93754843	93832652	8q21.13-q22.1	8q22.1	609884	TMEM67, MKS3, JBTS6, NPHP11	Transmembrane protein 67 (meckelin)	TMEM67	91147	ENSG00000164953		{Bardet-Biedl syndrome 14, modifier of}, 615991 (3), Autosomal recessive; COACH syndrome, 216360 (3), Autosomal recessive; Joubert syndrome 6, 610688 (3), Autosomal recessive; Meckel syndrome 3, 607361 (3), Autosomal recessive; Nephronophthisis 11, 613550 (3), Autosomal recessive	Tmem67 (MGI:1923928)
chr8	93916854	93926067	8q22.1	8q22.1	605993	PDP1, PPM2C, PDPC	Pyruvate dehydrogenase phosphatase catalytic subunit 1	PDP1	54704	ENSG00000164951		Pyruvate dehydrogenase phosphatase deficiency, 608782 (3), Autosomal recessive	Pdp1 (MGI:2685870)
chr8	94127161	94217302	8q22.1	8q22.1	603017	CDH17, CDH16, HPT1	Cadherin-17, liver-intestine	CDH17	1015	ENSG00000079112			Cdh17 (MGI:1095414)
chr8	94249248	94262344	8q13-q21	8q22.1	600164	GEM	GTP-binding protein overexpressed in skeletal muscle	GEM	2669	ENSG00000164949			Gem (MGI:99844)
chr8	94371959	94475114	8q21.3-q22	8q22.1	604289	RAD54B	RAD54, S. cerevisiae, homolog of, B	RAD54B	25788	ENSG00000265817		Colon cancer, somatic, 114500 (3); Lymphoma, non-Hodgkin, somatic, 605027 (3)	Rad54b (MGI:3605986)
chr8	94427711	94436951	8q22.1	8q22.1	616306	FSBP	Fibrinogen silencer-binding protein	FSBP	100861412	ENSG00000265817			Fsbp (MGI:5301008)
chr8	94487776	94553517	8q22.1	8q22.1	616447	KIAA1429	KIAA1429 gene	VIRMA	25962	ENSG00000164944			Virma (MGI:1913435)
chr8	94640998	94707465	8q22.1	8q22.1	612959	ESRP1, RMB35A	Epithelial splicing regulatory protein 1	ESRP1	54845	ENSG00000104413			Esrp1 (MGI:1917326)
chr8	94719707	94793847	8q22.1	8q22.1	613895	DPY19L4	DPY19-like 4	DPY19L4	286148	ENSG00000156162			Dpy19l4 (MGI:2685869)
chr8	94823289	94894663	8q22.1	8q22.1	611351	INTS8, INT8	Integrator complex subunit 8	INTS8	55656	ENSG00000164941			Ints8 (MGI:1919906)
chr8	94880223	94896670	8q22.1	8q22.1	603775	CCNE2	Cyclin E2	CCNE2	9134	ENSG00000175305			Ccne2 (MGI:1329034)
chr8	94895767	95118495	8q22.1	8q22.1	612392	NDUFAF6, C8orf38	NADH dehydrogenase (ubiquinone) complex I, assembly factor 6	NDUFAF6	137682	ENSG00000156170		Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Ndufaf6 (MGI:1924197)
chr8	94925971	94949386	8q22	8q22.1	606185	TP53DINP1, P53DINP1	Tumor protein p53 inducible nuclear protein 1	TP53INP1	94241	ENSG00000164938			Trp53inp1 (MGI:1926609)
chr8	95133720	95156684	8q22.1	8q22.1	615208	PLEKHF2, EAPF, PHAFIN2	Pleckstrin homology domain-containing protein, family F, member 2	PLEKHF2	79666	ENSG00000175895			Plekhf2 (MGI:1919051)
chr8	95244912	95270603	8q22.1	8q22.1	614477	C8orf37, CORD16, RP64, BBS21	Chromosome 8 open reading frame 37	C8orf37	157657	ENSG00000156172		Bardet-Biedl syndrome 21, 617406 (3), Autosomal recessive; Cone-rod dystrophy 16, 614500 (3), Autosomal recessive; Retinitis pigmentosa 64, 614500 (3), Autosomal recessive	2610301B20Rik (MGI:1914407)
chr8	96142332	96160791	8q22.1	8q22.1	601147	GDF6, MCOP4, KFS1, MCOPCB6, LCA17, SYNS4	Growth/differentiation factor 6	GDF6	392255	ENSG00000156466		Klippel-Feil syndrome 1, autosomal dominant, 118100 (3), Autosomal dominant; Leber congenital amaurosis 17, 615360 (3), Autosomal recessive; Microphthalmia with coloboma 6, digenic, 613703 (3), Autosomal dominant; Microphthalmia, isolated 4, 613094 (3); Multiple synostoses syndrome 4, 617898 (3), Autosomal dominant	Gdf6 (MGI:95689)
chr8	96226675	96235633	8q22	8q22.1	191330	UQCRB, UQBP, QPC, MC3DN3	Ubiquinol-cytochrome c reductase binding protein	UQCRB	7381	ENSG00000156467		Mitochondrial complex III deficiency, nuclear type 3, 615158 (3), Autosomal recessive	Uqcrb (MGI:1914780)
chr8	96239397	96261612	8q22.1	8q22.1	616930	MTERF3, MTERFD1	Transcription termination factor 3, mitochondrial	MTERF3	51001	ENSG00000156469			Mterf3 (MGI:1913660)
chr8	96261885	96334551	8q22	8q22.1	612792	PTDSS1, PSS1, KIAA0024, LMHD	Phosphatidylserine synthase 1	PTDSS1	9791	ENSG00000156471		Lenz-Majewski hyperostotic dwarfism, 151050 (3), Autosomal dominant	Ptdss1 (MGI:1276575)
chr8	96493600	96611808	8q22-q24	8q22.1	142460	SDC2, HSPG1	Syndecan 2 (heparan sulfate proteoglycan 1, cell surface-associated; fibroglycan)	SDC2	6383	ENSG00000169439			Sdc2 (MGI:1349165)
chr8	97273485	97277947	8q22	8q22.1	614721	TSPYL5, KIAA1750	TSPY-like 5	TSPYL5	85453	ENSG00000180543			Tspyl5 (MGI:2442458)
chr8	97643971	97730259	8q22-q23	8q22.1	610323	MTDH, AEG1, LYRIC	Metadherin	MTDH	92140	ENSG00000147649			Mtdh (MGI:1914404)
chr8	97775580	97852601	8q22.1	8q22.1	613296	LAPTM4B	Lysosome-associated protein, transmembrane 4, beta	LAPTM4B	55353	ENSG00000104341	pseudogenes on 1q, 3q,3p, 4q, and 7q33-q35		Laptm4b (MGI:1890494)
chr8	97869020	98036719	8q22	8q22.1-q22.2	602108	MATN2	Matrilin 2	MATN2	4147	ENSG00000132561			Matn2 (MGI:109613)
chr8	98041709	98045589	Chr.8	8q22.2	180467	RPL30	Ribosomal protein L30	RPL30	6156	ENSG00000156482			Rpl30 (MGI:98037)
chr8	98102338	98117189	8q22	8q22.2	602487	HRSP12, PSP, UK114	Heat-responsive protein 12	RIDA	10247	ENSG00000132541			Rida (MGI:1095401)
chr8	98117292	98159840	8q22	8q22.2	602486	POP1, ANXD2	Processing of precursor 1, S. cerevisiae, homolog of	POP1	10940	ENSG00000104356		Anauxetic dysplasia 2, 617396 (3), Autosomal recessive	Pop1 (MGI:1914974)
chr8	98427021	98430796	8q22	8q22.2	602906	KCNS2	Potassium voltage-gated channel, delayed-rectifier, subfamily S, member-2	KCNS2	3788	ENSG00000156486			Kcns2 (MGI:1197011)
chr8	98433047	98944328	8q22.2	8q22.2	605030	STK3, MST2, KRS1	Serine/threonine protein kinase 3	STK3	6788	ENSG00000104375			Stk3 (MGI:1928487)
chr8	98944402	98952103	8q23	8q22.2	611297	OSR2	Odd-skipped-related 2	OSR2	116039	ENSG00000164920			Osr2 (MGI:1930813)
chr8	99013084	99877585	8q22-q23	8q22.2	607817	VPS13B, KIAA0532, COH1	Vacuolar protein sorting 13, yeast, homolog of, B	VPS13B	157680	ENSG00000132549		Cohen syndrome, 216550 (3), Autosomal recessive	Vps13b (MGI:1916380)
chr8	99877994	99894013	8q22-q23	8q22.2	124090	COX6C	Cytochrome c oxidase, subunit VIc	COX6C	1345	ENSG00000164919	pseudogene on 16p12		Gm6265 (MGI:3649160)
chr8	99960935	100106945	8q22.2	8q22.2	615650	RGS22	Regulator of G protein signaling 22	RGS22	26166	ENSG00000132554			Rgs22 (MGI:3613651)
chr8	100133359	100150568	8q22.3	8q22.2	609110	FBXO43, EMI2, ERP1, FBX43	F-box only protein 43	FBXO43	286151	ENSG00000156509			Fbxo43 (MGI:1926053)
chr8	100150610	100154001	8p22	8q22.2	606033	POLR2K, RPB12	Polymerase II, RNA, subunit K	POLR2K	5440	ENSG00000147669			Polr2k (MGI:102725)
chr8	100157868	100241903	8q22	8q22.2	603395	SPAG1, CILD28	Sperm-associated antigen-1	SPAG1	6674	ENSG00000104450		Ciliary dyskinesia, primary, 28, 615505 (3), Autosomal recessive	Spag1 (MGI:1349387)
chr8	100500000	105100000	8q22.3		149000	KTWS, KTS	Klippel-Trenaunay-Weber syndrome		791122		translocation with 14q13	Klippel-Trenaunay-Weber syndrome, 149000 (2), Isolated cases	
chr8	100500000	105100000	8q22.3		613318	MMD2	Miyoshi muscular dystrophy 2		100505381		max lod at D10S2325	Miyoshi muscular dystrophy 2, 613318 (2)	
chr8	100702915	100722086	8q22	8q22.3	604679	PABPC1, PAB1, PABP1, PABP	Polyadenylate-binding protein, cytoplasmic, 1	PABPC1	26986	ENSG00000070756			Pabpc1 (MGI:1349722)
chr8	100918575	100954067	8q22.3	8q22.3	601288	YWHAZ	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide	YWHAZ	7534	ENSG00000164924	pseudogene on 2p25		Ywhaz (MGI:109484)
chr8	101492438	101678103	8q22	8q22.3	608576	GRHL2, TFCP2L3, DFNA28, ECTDS	Grainyhead-like 2	GRHL2	79977	ENSG00000083307		Deafness, autosomal dominant 28, 608641 (3), Autosomal dominant; Ectodermal dysplasia/short stature syndrome, 616029 (3), Autosomal recessive	Grhl2 (MGI:2182543)
chr8	101686541	102125080	8q22.2	8q22.3	606722	NCALD	Neurocalcin, delta	NCALD	83988	ENSG00000104490			Ncald (MGI:1196326)
chr8	102204500	102239117	8q23.1	8q22.3	604712	RRM2B, P53R2, PEOA5, MTDPS8A, MTDPS8B	Ribonucleotide reductase M2 B, TP53 inducible	RRM2B	50484	ENSG00000048392		Mitochondrial DNA depletion syndrome 8A (encephalomyopathic type with renal tubulopathy), 612075 (3), Autosomal recessive; Mitochondrial DNA depletion syndrome 8B (MNGIE type), 612075 (3), Autosomal recessive; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 5, 613077 (3), Autosomal dominant	Rrm2b (MGI:2155865)
chr8	102252272	102412688	8q22.3	8q22.3	608413	UBR5, EDD1, HYD, KIAA0896	Ubiquitin protein ligase E3 component n-recognin 5	UBR5	51366	ENSG00000104517			Ubr5 (MGI:1918040)
chr8	102551619	102561016	8q22	8q22.3	182878	ODF1	Outer dense fiber of sperm tails 1	ODF1	4956	ENSG00000155087			Odf1 (MGI:97424)
chr8	102648776	102655901	8q22.2	8q22.3	601878	KLF10, TIEG	Kruppel-like factor 10	KLF10	7071	ENSG00000155090			Klf10 (MGI:1101353)
chr8	102826301	102864199	8q22.3	8q22.3	607909	AZIN1, OAZIN	Antizyme inhibitor 1	AZIN1	51582	ENSG00000155096			Azin1 (MGI:1859169)
chr8	103021019	103073056	8q22.3	8q22.3	603097	ATP6V1C1, ATP6C, ATP6D	ATPase, H+ transporting, lysosomal, 42-kD, V1 subunit C, isoform 1	ATP6V1C1	528	ENSG00000155097			Atp6v1c1 (MGI:1913585)
chr8	103140692	103230304	8q22.3	8q22.3	606602	BAALC	Brain and acute leukemia gene, cytoplasmic	BAALC	79870	ENSG00000164929			Baalc (MGI:1928704)
chr8	103298432	103332865	8q22.3-q23.1	8q22.3	603409	FZD6, NDNC10	Frizzled, Drosophila, homolog of, 6	FZD6	8323	ENSG00000164930		Nail disorder, nonsyndromic congenital, 10, (claw-shaped nails), 614157 (3), Autosomal recessive	Fzd6 (MGI:108474)
chr8	103371514	103383004	8q22.3	8q22.3	610635	CTHRC1	Collagen triple-helix repeat-containing protein 1	CTHRC1	115908	ENSG00000164932		Barrett esophagus/esophageal adenocarcinoma, 614266 (3)	Cthrc1 (MGI:1915838)
chr8	103398637	103415334	8q21.2	8q22.3	610815	SLC25A32, MFT, RREI	Solute carrier family 25 (mitochondrial carrier, folate), member 32	SLC25A32	81034	ENSG00000164933	mutation identified in 1 RREI patient	?Exercise intolerance, riboflavin-responsive, 616839 (3), Autosomal recessive	Slc25a32 (MGI:1917156)
chr8	103414713	103443452	8q22.3	8q22.3	616196	DCAF13, WDSOF1	DDB1- and CUL4-associated factor 13	DCAF13	25879	ENSG00000164934			Dcaf13 (MGI:2684929)
chr8	103499933	104254429	8q23	8q22.3	606630	RIMS2, KIAA0751, RIM2, OBOE	Regulating synaptic membrane exocytosis-2	RIMS2	9699	ENSG00000176406			Rims2 (MGI:2152972)
chr8	104339086	104356873	8q22	8q22.3	605933	TM7SF4, DCSTAMP, FIND	Transmembrane 7 superfamily, member 4	DCSTAMP	81501	ENSG00000164935			Dcstamp (MGI:1923016)
chr8	104379423	104467073	8q22	8q22.3	613326	DPYS, DHP	Dihydropyrimidinase	DPYS	1807	ENSG00000147647		Dihydropyrimidinuria, 222748 (3), Autosomal recessive	Dpys (MGI:1928679)
chr8	105100000	116700000	8q23		612231	CRCS6	Colorectal cancer, susceptibility to, 6		100187710		associated with rs16892766	{Colorectal cancer, susceptibility to, 6}, 612231 (2)	
chr8	105100000	116700000	8q23		602429	GLC1D	Glaucoma 1, open angle, D	GLC1D	2724			Glaucoma 1D, primary open angle, 602429 (2)	
chr8	105100000	116700000	8q23		607053	HDLCQ2	High density lipoprotein cholesterol level QTL 2		353127			[High density lipoprotein cholesterol level QTL 2], 607053 (2)	
chr8	105100000	145138636	8q23-q24		140300	HT	Hashimoto thyroiditis		140805		?chr.12	Hashimoto thyroiditis, 140300 (2), Autosomal dominant	
chr8	105100000	116700000	8q23		612729	LBMQTL1	Lean body mass quantitative trait locus 1		100294719		associated with rs16892496 and rs7832552	[Lean body mass QTL 1], 612729 (2)	
chr8	105100000	145138636	8q23-q24		611376	MGS	Mungan syndrome		100126595		between D8S1830 and D8S1799	Mungan syndrome, 611376 (2), Autosomal recessive	
chr8	105100000	116700000	8q23		608796	MYMY3	Moyamoya disease 3	MYMY3	493818		max lod at D8S546	Moyamoya disease 3, 608796 (2)	
chr8	105318858	105804538	8q23	8q23.1	603693	ZFPM2, FOG2, DIH3, SRXY9	Zinc finger protein, multitype 2 (friend of GATA2)	ZFPM2	23414	ENSG00000169946		Diaphragmatic hernia 3, 610187 (3); Tetralogy of Fallot, 187500 (3), Autosomal dominant; 46XY sex reversal 9, 616067 (3), Autosomal dominant	Zfpm2 (MGI:1334444)
chr8	106270177	106752693	8q23	8q23.1	605609	OXR1	Oxidation resistance 1	OXR1	55074	ENSG00000164830	?pseudogene on chr.15		Oxr1 (MGI:2179326)
chr8	106759482	106809072	8q23	8q23.1	609747	ABRA, STARS	Actin-binding RHO-activating protein	ABRA	137735	ENSG00000174429			Abra (MGI:2444891)
chr8	107249481	107498054	8q22	8q23.1	601667	ANGPT1, ANG1	Angiopoietin-1	ANGPT1	284	ENSG00000154188			Angpt1 (MGI:108448)
chr8	107899315	108083684	8q23.1	8q23.1	610575	RSPO2, CRISTIN2	R-spondin family, member 2	RSPO2	340419	ENSG00000147655			Rspo2 (MGI:1922667)
chr8	108201742	108248733	8q22-q23	8q23.1	602210	EIF3E, EIF3S6, INT6	Eukaryotic translation initiation factor 3, subunit E (oncogene INT6)	EIF3E	3646	ENSG00000104408			Eif3e (MGI:99257)
chr8	108443582	108489187	8q23.1	8q23.1	607722	EMC2, KIAA0103	ER membrane protein complex subunit 2	EMC2	9694	ENSG00000104412			Emc2 (MGI:1913986)
chr8	108606849	108787614	8q23.2	8q23.1	613935	TMEM74	Transmembrane protein 74	TMEM74	157753	ENSG00000164841			Tmem74 (MGI:2443417)
chr8	109085744	109119784	8q23	8q23.1	188545	TRHR	Thyrotropin-releasing hormone receptor	TRHR	7201	ENSG00000174417		Thyrotropin-releasing hormone resistance, generalized (3)	Trhr (MGI:98824)
chr8	109240918	109334120	8q23	8q23.1	606109	CML66	Immunogenic tumor antigen CML66	NUDCD1	84955	ENSG00000120526			Nudcd1 (MGI:1914679)
chr8	109362476	109537213	8q23	8q23.1-q23.2	607843	PKHD1L1	PKHD1-like 1	PKHD1L1	93035	ENSG00000205038			Pkhd1l1 (MGI:2183153)
chr8	109539699	109565995	8q23	8q23.2	605772	EBAG9, RCAS1, EB9	Estrogen receptor-binding site-associated antigen 9	EBAG9	9166	ENSG00000147654			Ebag9 (MGI:1859920)
chr8	109573977	109691790	8q23	8q23.2	611568	GOLSYN, SYBU, KIAA1472	Golgi-localized syntaphilin-related protein	SYBU	55638	ENSG00000147642			Sybu (MGI:2442392)
chr8	109963644	109975846	8q22.3-q24.1	8q23.2	608164	KCNV1, KV8.1	Potassium channel, voltage-gated, subfamily V, member 1	KCNV1	27012	ENSG00000164794			Kcnv1 (MGI:1914748)
chr8	112222927	113437498	8q23.3	8q23.3	608399	CSMD3, KIAA1894	Cub and Sushi multiple domains 3	CSMD3	114788	ENSG00000164796			Csmd3 (MGI:2386403)
chr8	115408495	115669636	8q24.12	8q23.3	604386	TRPS1	Zinc finger transcription factor TRPS1	TRPS1	7227	ENSG00000104447		Trichorhinophalangeal syndrome, type I, 190350 (3), Autosomal dominant; Trichorhinophalangeal syndrome, type III, 190351 (3), Autosomal dominant	Trps1 (MGI:1927616)
chr8	116644815	116755822	8q24.11	8q23.3-q24.1	603912	EIF3H, EIF3S3	Eukaryotic translation initiation factor 3, subunit H	EIF3H	8667	ENSG00000147677			Eif3h (MGI:1915385)
chr8	116700000	145138636	8q24		612113	BMND10	Bone mineral density quantitative trait locus 10		100188883		associated with rs6469804 and rs6993813	[Bone mineral density QTL 10], 612113 (2)	
chr8	116700000	145138636	8q24		610649	BSZQTL3	Bone size quantitative trait locus 3		100188815			[Bone size quantitative trait locus 3], 610649 (2)	
chr8	116700000	145138636	8q24		611469	CRCS2	Colorectal cancer, susceptibility to, 2		100188841		associated with rs7014346	{Colorectal cancer, susceptibility to, 2}, 611469 (2)	
chr8	116700000	145138636	8q24		600131	ECA1	Epilepsy, childhood absence, 1	ECA1	50966			Epilepsy, childhood absence, 1, 600131 (2), Autosomal dominant	
chr8	116700000	145138636	8q24		600669	EIG1	Epilepsy, idiopathic generalized, susceptibility to 1	EGI	1957		?same as EBN2	{Epilepsy, idiopathic generalized, susceptibility to, 1}, 600669 (2), Autosomal dominant	
chr8	116700000	145138636	8q24		601068	FAME1, BAFME1, MEBA	Epilepsy, myoclonic, adult familial, 1	FCMTE1	50968			Epilepsy, myoclonic, familial adult, 1, 601068 (2), Autosomal dominant	
chr8	116700000	145138636	8q24		611100	HPC10	Prostate cancer, hereditary, 10		100188834		strongest assoc. with rs1447295	{Prostate cancer, hereditary, 10}, 611100 (2)	
chr8	116700000	145138636	8q24		167959	HPV18I1	Human papillomavirus type 18 integration site-1	HPV18I1	3260				
chr8	116700000	126300000	8q24.1		275220	THM	Tibial hemimelia		117193			?Tibial hemimelia, 275220 (2), Autosomal recessive	
chr8	116700000	126300000	8q24.11-q24.13		150230	TRPS2, LGCR, LGS	Trichorhinophalangeal syndrome, type II (Langer-Giedion syndrome)				contiguous gene syndrome involving TRPS1 and EXT1	Trichorhinophalangeal syndrome, type II, 150230 (4), Autosomal dominant	
chr8	116845933	116874865	8q24	8q24.11	606462	RAD21, SCC1, NXP1, KIAA0078, CDLS4	Rad21, S. pombe, homolog of	RAD21	5885	ENSG00000164754		Cornelia de Lange syndrome 4, 614701 (3), Autosomal dominant	Rad21 (MGI:108016)
chr8	116950272	117176713	8q24.11	8q24.11	611145	SLC30A8, ZNT8	Solute carrier family 30 (zinc transporter), member 8	SLC30A8	169026	ENSG00000164756		{Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3), Autosomal dominant	Slc30a8 (MGI:2442682)
chr8	117520712	117540261	8q24.11	8q24.11	610237	MED30, TRAP25, THRAP6	Mediator complex subunit 30	MED30	90390	ENSG00000164758			Med30 (MGI:1917040)
chr8	117799362	118111818	8q24.11-q24.13	8q24.11	608177	EXT1	Exostosin 1	EXT1	2131	ENSG00000182197	distal to TRPS1	Chondrosarcoma, 215300 (3), Autosomal recessive; Exostoses, multiple, type 1, 133700 (3), Autosomal dominant	Ext1 (MGI:894663)
chr8	118923556	118952143	8q24	8q24.12	602643	TNFRSF11B, OPG, OCIF, PDB5	Tumor necrosis factor receptor superfamily, member 11B (osteoprotegerin)	TNFRSF11B	4982	ENSG00000164761		Paget disease of bone 5, juvenile-onset, 239000 (3), Autosomal recessive	Tnfrsf11b (MGI:109587)
chr8	118952166	119108454	8q23-q24.1	8q24.12	607620	COLEC10, CLL1, 3MC3	Collectin 10	COLEC10	10584	ENSG00000184374		3MC syndrome 3, 248340 (3), Autosomal recessive	Colec10 (MGI:3606482)
chr8	119416311	119424437	8q24.1	8q24.12	164958	NOV	Nephroblastoma overexpressed gene	NOV	4856	ENSG00000136999	proximal to MYC		Nov (MGI:109185)
chr8	119557076	119673575	8q24.1	8q24.12	601060	ENPP2, PDNP2	Ectonucleotide pyrophosphatase/phosphodiesterase 2	ENPP2	5168	ENSG00000136960			Enpp2 (MGI:1321390)
chr8	119730772	119832857	8q24.12	8q24.12	604912	TAF2, TAF2B, TAFII150, CIF150, MRT40	TAF2 RAN polymerase II, TATA box-binding protein-associated factor, 150kD	TAF2	6873	ENSG00000064313		Mental retardation, autosomal recessive 40, 615599 (3), Autosomal recessive	Taf2 (MGI:2443028)
chr8	119833940	119855929	8q24.12	8q24.12	613203	DSCC1, DCC1	Defective in sister chromatid cohesion 1, S. cerevisiae, homolog of	DSCC1	79075	ENSG00000136982			Dscc1 (MGI:1919357)
chr8	119873654	120056201	8q24.12	8q24.12	612974	DEPDC6, DEPTOR	DEP domain-containing protein 6	DEPTOR	64798	ENSG00000155792			Deptor (MGI:2146322)
chr8	120124466	120373574	8q23	8q24.12	120324	COL14A1, UND	Collagen, type XIV, alpha-1 (undulin)	COL14A1	7373	ENSG00000187955			Col14a1 (MGI:1341272)
chr8	120395843	120445406	8q24.12	8q24.12	610200	MRPL13, RPML13, L13A	Mitochondrial ribosomal protein L13	MRPL13	28998	ENSG00000172172			Mrpl13 (MGI:2137218)
chr8	120445397	120523634	8q24.1-q24.3	8q24.12	605927	MTBP	Mouse double minute 2 homolog, binding protein of	MTBP	27085	ENSG00000172167			Mtbp (MGI:2146005)
chr8	120535744	120812068	8q23-q24	8q24.12	600026	SNT2B1, A1B, SNTB1	Syntrophin, beta 1 (dystrophin-associated protein A1, 59kD, basic basic component 1)	SNTB1	6641	ENSG00000172164			Sntb1 (MGI:101781)
chr8	121500000	135400000	8q24.13-q24.22		612448	ARHI1	Age-related hearing impairment 1		100233147		between rs3765212 and rs4601326	{Age-related hearing impairment 1}, 612448 (2)	
chr8	121500000	130400000	8q24.13-q24.21		614936	PPKP1B	Keratoderma, palmoplantar, punctate type IB		101154752		between D8S1804 and D8S1720	Keratoderma, palmoplantar, punctate type IB, 614936 (2), Autosomal dominant	
chr8	121613030	121641389	8q24.12	8q24.13	601636	HAS2	Hyaluronan synthase-2	HAS2	3037	ENSG00000170961			Has2 (MGI:107821)
chr8	121639345	121645324	8q24.13	8q24.13	614353	HAS2AS1, HASNT	HAS2 antisense RNA 1	HAS2-AS1	594842				
chr8	123013163	123042422	8q24.13	8q24.13	608813	DERL1, DER1	DER1-like domain family, member 1	DERL1	79139	ENSG00000136986			Derl1 (MGI:1915069)
chr8	123248449	123275540	8q	8q24.13	604764	ZHX1	Zinc finger and homeodomain protein 1	ZHX1	11244	ENSG00000165156			Zhx1 (MGI:109271)
chr8	123319849	123396464	8q24.13	8q24.13	611941	ATAD2, ANCCA	ATPase family, AAA domain-containing, member 2	ATAD2	29028	ENSG00000156802			Atad2 (MGI:1917722)
chr8	123497886	123541252	8q24.13	8q24.13	606604	FBXO32, MAFBX, FLJ32424, ATROGIN1	F-box only protein 32	FBXO32	114907	ENSG00000156804			Fbxo32 (MGI:1914981)
chr8	123680793	123737425	8q24.1-q24.2	8q24.13	602573	ANX13, ISA	Annexin XIII	ANXA13	312	ENSG00000104537			Anxa13 (MGI:1917037)
chr8	124306188	124372698	8q24.13	8q24.13	616609	TMEM65	Transmembrane protein 65	TMEM65	157378	ENSG00000164983			Tmem65 (MGI:1922118)
chr8	124450806	124453025	8q24.13	8q24.13	611244	TRMT12, TRM12	tRNA methyltransferase 12, S. cerevisiae, homolog of	TRMT12	55039	ENSG00000183665			Trmt12 (MGI:1915510)
chr8	124474766	124488617	8q24.1	8q24.13	603046	RNF139, TRC8, RCA1	RING finger protein 139	RNF139	11236	ENSG00000170881		Renal cell carcinoma, 144700 (3)	Rnf139 (MGI:1923091)
chr8	124539101	124549985	8q13.3	8q24.13	601445	NDUFB9, UQOR22	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 9 (22kD, B22)	NDUFB9	4715	ENSG00000147684	mutation identified in 1 family	?Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufb9 (MGI:1913468)
chr8	124550769	124728506	8q24.1	8q24.13	608486	MTSS1, MIM, KIAA0429	Metastasis suppressor 1	MTSS1	9788	ENSG00000170873			Mtss1 (MGI:2384818)
chr8	124998477	125022282	8q24.1	8q24.13	602019	SQLE	Squalene epoxidase	SQLE	6713	ENSG00000104549			Sqle (MGI:109296)
chr8	125024259	125091818	8q24.13	8q24.13	610657	WSHC5, KIAA0196, SPG8, RTSC1	WASH complex, subunit 5	WASHC5	9897	ENSG00000164961		Ritscher-Schinzel syndrome 1, 220210 (3), Autosomal recessive; Spastic paraplegia 8, autosomal dominant, 603563 (3), Autosomal dominant	Washc5 (MGI:2146110)
chr8	125091778	125367124	8q24.13	8q24.13	617246	NSMCE2, NSE2, MMS21	Non-SMC element 2, S. cerevisiae, homolog of	NSMCE2	286053	ENSG00000156831		Seckel syndrome 10, 617253 (3), Autosomal recessive	Nsmce2 (MGI:1915751)
chr8	125430289	125438404	8q24.13	8q24.13	609461	TRIB1, TRB1, SKIP1, C8FW	Tribbles, Drosophila, homolog of, 1	TRIB1	10221	ENSG00000173334			Trib1 (MGI:2443397)
chr8	126300000	130400000	8q24.21		613032	GLM7	Glioma susceptibility 7		101409265		associated with rs55705857	{Glioma susceptibility 7}, 613032 (2)	
chr8	126552437	126558497	8q24.21	8q24.21	609483	FAM84B, BCMP101	Family with sequence similarity 84, member B	FAM84B	157638	ENSG00000168672			Fam84b (MGI:3026924)
chr8	127013153	127021013	8q24	8q24.21	616043	PCAT1	Prostate cancer-associated transcript 1, noncoding	PCAT1	100750225				
chr8	127072693	127082220	8q24.21	8q24.21	617678	PCAT2, PCA2, CARLO4	Prostate cancer-associated transcript 2, noncoding	PCAT2	103164619				
chr8	127079873	127092594	8q24	8q24.21	615452	PRNCR1, PCAT8	Prostate cancer-associated noncoding RNA 1	PRNCR1	101867536				
chr8	127187784	127197626	8q24.21	8q24.21	617703	CASC19, LINC01245, CARLO6	Cancer susceptibility candidate 19, noncoding	CASC19	103021165				
chr8	127207381	127219267	8q24.21	8q24.21	617705	CCAT1, CARLO5	Colon cancer-associated transcript 1, noncoding	CCAT1	100507056				
chr8	127244636	127392630	8q24.21	8q24.21	617702	CASC21, LINC01244, CARLO2	Cancer susceptibility candidate 21, noncoding	CASC21	103021164				
chr8	127289675	127482138	8q24.21	8q24.21	617701	CASC8, LINC00860, CARLO1	Cancer susceptibility candidate 8, noncoding	CASC8	727677				
chr8	127415611	127417209	8q24.21	8q24.21	615739	POU5F1B, POU5F1P1, OCT4PG1	POU domain, class 5, transcription factor 1B	POU5F1B	5462	ENSG00000212993			
chr8	127700607	127733966	8q24.21	8q24.21	617704	CASC11, LINC00990, CARLO7	Cancer susceptibility candidate 11, noncoding	CASC11	100270680				
chr8	127735433	127742950	8q24.12-q24.13	8q24.21	190080	MYC	Avian myelocytomatosis viral (v-myc) oncogene homolog	MYC	4609	ENSG00000136997	cen-5'-3'-ter	Burkitt lymphoma, 113970 (3), Isolated cases	Myc (MGI:97250)
chr8	127794532	128101252	8q24	8q24.21	165140	PVT1	Oncogene PVT-1 (MYC activator)	PVT1	5820				
chr8	129351693	129680238	8q24.21	8q24.21	613040	CCD26, RAM	Coiled-coil domain-containing protein 26	CCDC26	137196				
chr8	129705902	129786887	8q24.1-q24.2	8q24.21	608384	GSDMC, MLZE	Gasdermin C	GSDMC	56169	ENSG00000147697			Gsdmc,Gsdmc4,Gsdmc3,Gsdmc2 (MGI:1933176,MGI:3580656,MGI:1921798,MGI:2146102)
chr8	130052103	130443847	8q24.1-q24.2	8q24.21-q24.22	605953	ASAP1, DDEF1	Arf GTPase-activating protein with SH3 domain, ankyrin repeat, and PH domain 1	ASAP1	50807	ENSG00000153317			Asap1 (MGI:1342335)
chr8	130780299	131041603	8q24.2	8q24.22	103070	ADCY8, ADCY3	Adenylyl cyclase-8, brain	ADCY8	114	ENSG00000155897			Adcy8 (MGI:1341110)
chr8	131904087	132013641	8q24.2	8q24.22	611798	EFR3A, KIAA0143	EFR3, S. cerevisiae, homolog of, A	EFR3A	23167	ENSG00000132294			Efr3a (MGI:1923990)
chr8	132024219	132059379	8q24	8q24.22	601658	OC90, PLA2L	Otoconin 90 (phospholipase A2-like)	OC90	729330	ENSG00000253117	PLA2L = fusion between HHLA1 and OC90		Oc90 (MGI:1313269)
chr8	132061485	132105264	8q24	8q24.22	604109	HHLA1	Human endogenous retrovirus-H long terminal repeat-associating 1	HHLA1	10086	ENSG00000132297			Hhla1 (MGI:3615329)
chr8	132120857	132480756	8q24	8q24.22	602232	KCNQ3, EBN2, BFNC2	Potassium voltage-gated channel, KQT-like subfamily, member 3	KCNQ3	3786	ENSG00000184156		Seizures, benign neonatal, 2, 121201 (3), Autosomal dominant	Kcnq3 (MGI:1336181)
chr8	132570418	132685038	8q24.22	8q24.22	614930	LRRC6, LRTP, CILD19	Leucine-rich repeat-containing protein 6	LRRC6	23639	ENSG00000129295		Ciliary dyskinesia, primary, 19, 614935 (3), Autosomal recessive	Lrrc6 (MGI:1859553)
chr8	132866942	133134901	8q24.2-q24.3	8q24.22	188450	TG, AITD3, TDH3	Thyroglobulin	TG	7038	ENSG00000042832	distal to MYC	{Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3); Thyroid dyshormonogenesis 3, 274700 (3), Autosomal recessive	Tg (MGI:98733)
chr8	133036727	133103065	8q24.2-q24.3	8q24.22	601099	SLA	Src-like-adaptor	SLA	6503	ENSG00000155926	in intron of TG		Sla (MGI:104295)
chr8	133054958	133057766	8q24	8q24.22	617440	PTCSC1, NCRNA00197	Papillary thyroid carcinoma susceptibility candidate 1 gene	PTCSC1	100302522				
chr8	133190906	133231689	8q24.1-q24.3	8q24.22	603398	WISP1	Wnt-1 inducible signaling pathway protein 1	WISP1	8840	ENSG00000104415			Wisp1 (MGI:1197008)
chr8	133237170	133297586	8q24.3	8q24.22	605262	NDRG1, HMSNL, CMT4D	N-myc downstream-regulated gene 1	NDRG1	10397	ENSG00000104419		Charcot-Marie-Tooth disease, type 4D, 601455 (3), Autosomal recessive	Ndrg1 (MGI:1341799)
chr8	134477787	134713048	8q23-q24	8q24.22	610931	ZFAT1, ZNF406, AITD3	Zinc finger gene in autoimmune thyroid disease 1	ZFAT	57623	ENSG00000066827		{Autoimmune thyroid disease, susceptibility to, 3}, 608175 (3)	Zfat (MGI:2681865)
chr8	135457460	135656515	8q24.2	8q24.23	610421	KHDRBS3, TSTAR, SALP, SLM2, ETOILE	KH domain-containing, RNA-binding, signal transduction-associated protein 3	KHDRBS3	10656	ENSG00000131773			Khdrbs3 (MGI:1313312)
chr8	138588234	138914086	8q24.2	8q24.2-q24.3	610026	COL22A1	Collagen, type XXII, alpha-1 polypeptide	COL22A1	169044	ENSG00000169436			Col22a1 (MGI:1916950)
chr8	138900000	145138636	8q24.3		616992	C8orf17, MOST1	Chromosome 8 open reading frame 17	C8orf17	100507249				
chr8	138900000	145138636	8q24.3		612858	OFC12	Orofacial cleft 12		100302515		associated with rs987525	Orofacial cleft 12, 612858 (2)	
chr8	139600837	139703134	8q24.1-q24.3	8q24.3	605874	KCNK9, TASK3	Potassium channel, subfamily K, member 9	KCNK9	51305	ENSG00000169427		Birk-Barel mental retardation dysmorphism syndrome, 612292 (3)	Kcnk9 (MGI:3521816)
chr8	139727724	140458578	8q24.3	8q24.3	611966	TRAPPC9, NIBP, KIAA1882, MRT13	Trafficking protein particle complex 9	TRAPPC9	83696	ENSG00000167632		Mental retardation, autosomal recessive 13, 613192 (3), Autosomal recessive	Trappc9 (MGI:1923760)
chr8	140511297	140517152	8q11-q12	8q24.3	607268	CHARC1, CHARC15, YCL1	Chromatin accessibility complex, subunit 1	CHRAC1	54108	ENSG00000104472			Chrac1 (MGI:2135796)
chr8	140520150	140642405	8q24	8q24.3	606229	AGO2, EIF2C2	Argonaute 2, RISC catalytic component	AGO2	27161	ENSG00000123908			Ago2 (MGI:2446632)
chr8	140658381	141002078	8q24-qter	8q24.3	600758	PTK2, FADK	PTK2 protein tyrosine kinase	PTK2	5747	ENSG00000169398			Ptk2 (MGI:95481)
chr8	141128561	141195803	8q24.3	8q24.3	617503	DENND3, KIAA0870	DENN domain-containing protein 3	DENND3	22898	ENSG00000105339			Dennd3 (MGI:2146009)
chr8	141356484	141367264	8q24.2-q24.3	8q24.3	601908	GPR20	G protein-coupled receptor-20	GPR20	2843	ENSG00000204882			Gpr20 (MGI:2441803)
chr8	141391994	141432453	8q24.3	8q24.3	606449	PTP4A3, PRL3	Protein-tyrosine phosphatase, type 4A, 3	PTP4A3	11156	ENSG00000184489			Ptp4a3 (MGI:1277098)
chr8	142449702	142545008	8q24	8q24.3	602682	ADGRB1, BAI1, GDAIF	Adhesion G protein-coupled receptor B1	ADGRB1	575	ENSG00000181790			Adgrb1 (MGI:1933736)
chr8	142611043	142614471	8q24	8q24.3	612461	ARC, KIAA0278	Activity-regulated cytoskeleton-associated protein	ARC	23237	ENSG00000198576			Arc (MGI:88067)
chr8	142651500	142669993	8q24	8q24.3	603210	JRK, JH8	Jerky, mouse, homolog of	JRK	8629	ENSG00000234616			Jrk (MGI:106214)
chr8	142670307	142682726	8q24.2	8q24.3	602470	PSCA	Prostate stem cell antigen	PSCA	8000	ENSG00000167653			Psca (MGI:1919623)
chr8	142700080	142704169	8q24.3	8q24.3	615093	LY6K	Lymphocyte antigen 6 complex, locus K	LY6K	54742	ENSG00000160886			
chr8	142740943	142742410	8qter	8q24.3	606119	SLURP1, MDM	Secreted LY6/uPAR-related protein 1	SLURP1	57152	ENSG00000126233		Meleda disease, 248300 (3), Autosomal recessive	Slurp1 (MGI:1930923)
chr8	142771196	142777847	Chr.8	8q24.3	606110	LYNX1	Lynx1, mouse, homolog of	LYNX1	66004	ENSG00000180155			Lynx1 (MGI:1345180)
chr8	142784881	142786591	8q24-qter	8q24.3	606204	LY6D, E48	Lymphocyte antigen 6 complex, locus D	LY6D	8581	ENSG00000167656	?pseudogene ono 15q22		Ly6d (MGI:96881)
chr8	142834800	142846845	8q24.3	8q24.3	602370	GML	Glycosylphosphatidylinositol-anchored molecule-like protein	GML	2765	ENSG00000104499			Gml,Gml2 (MGI:1341831,MGI:3644767)
chr8	142872356	142879819	8q21	8q24.3	610613	CYP11B1, P450C11, FHI	Cytochrome P450, subfamily XIB, polypeptide 1 (11-beta-hydroxylase; corticosteroid methyl-oxidase II (CMO II))	CYP11B1	1584	ENSG00000160882	chimeric CYP11B1/CYP11B2 gene = anti-Lepore-like	Adrenal hyperplasia, congenital, due to 11-beta-hydroxylase deficiency, 202010 (3), Autosomal recessive; Aldosteronism, glucocorticoid-remediable, 103900 (3), Autosomal dominant	Cyp11b2 (MGI:88584)
chr8	142910558	142917842	8q21	8q24.3	124080	CYP11B2	Cytochrome P450, subfamily XIB, polypeptide 2	CYP11B2	1585	ENSG00000179142		Aldosterone to renin ratio raised (3); Hypoaldosteronism, congenital, due to CMO I deficiency, 203400 (3), Autosomal recessive; Hypoaldosteronism, congenital, due to CMO II deficiency, 610600 (3), Autosomal recessive; {Low renin hypertension, susceptibility to} (3)	Cyp11b1 (MGI:88583)
chr8	143018484	143022409	8q24.3	8q24.3	601384	LY6E, RIGE, SCA2	Lymphocyte antigen 6 complex, locus E (retinoic acid induced gene E)	LY6E	4061	ENSG00000160932			Ly6e (MGI:106651)
chr8	143157913	143160635	8q24.3	8q24.3	603625	LY6H	Lymphocyte antigen 6 complex, locus H	LY6H	4062	ENSG00000176956			Ly6h (MGI:1346030)
chr8	143213192	143217169	8q24.3	8q24.3	612757	GPIHBP1, HYPL1D	Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1	GPIHBP1	338328	ENSG00000277494		Hyperlipoproteinemia, type 1D, 615947 (3), Autosomal recessive	
chr8	143267436	143276930	8q24.3	8q24.3	165280	GLI4, HKR4	GLI-Kruppel family member GLI4 (oncogene HKR4)	GLI4	2738	ENSG00000250571			
chr8	143309323	143359976	8q24.3	8q24.3	606387	TOP1MT	Topoisomerase I, mitochondrial	TOP1MT	116447	ENSG00000184428			Top1mt (MGI:1920210)
chr8	143368826	143384219	8q24.3	8q24.3	601031	RHPN1, ODF5	Rhophilin 1	RHPN1	114822	ENSG00000158106			Rhpn1 (MGI:1098783)
chr8	143428059	143430431	8q24	8q24.3	610303	MAFA, RIPE3B1, INSDM	v-MAF avian musculoaponeurotic fibrosarcoma oncogene homolog A	MAFA	389692	ENSG00000182759		Insulinomatosis and diabetes mellitus, 147630 (3), Autosomal dominant	Mafa (MGI:2673307)
chr8	143553386	143563061	8q24.3	8q24.3	617042	GSDMD, GSDMDC1, DFNA5L	Gasdermin D	GSDMD	79792	ENSG00000104518			Gsdmd (MGI:1916396)
chr8	143574584	143578350	8q24.3	8q24.3	611552	NAPRT1	Nicotinate phosphoribosyltransferase domain-containing 1	NAPRT	93100	ENSG00000147813			Naprt (MGI:2442664)
chr8	143579721	143597674	8q24.3	8q24.3	130592	EEF1D, EF1D	Eukaryotic translation elongation factor 1, delta	EEF1D	1936	ENSG00000104529			Eef1d (MGI:1913906)
chr8	143603223	143609613	8q24.3	8q24.3	616408	PYCRL, PYCR3	Pyrroline-5-carboxylate reductase-like	PYCR3	65263	ENSG00000104524			Pycrl (MGI:1913444)
chr8	143612617	143618042	8q24.3	8q24.3	137020	TSTA3	Tissue-specific transplantation antigen-3	TSTA3	7264	ENSG00000104522			Tsta3 (MGI:98857)
chr8	143723932	143741625	8q24.3	8q24.3	611927	FAM83H, AI3A	Family with sequence similarity 83, member H	FAM83H	286077	ENSG00000180921		Amelogenesis imperfecta, type IIIA, 130900 (3), Autosomal dominant	Fam83h (MGI:2145900)
chr8	143790919	143815378	8q24.3	8q24.3	607733	SCRIB, SCRB1, KIAA0147	Scribble, Drosophila, homolog of	SCRIB	23513	ENSG00000180900			Scrib (MGI:2145950)
chr8	143816343	143830040	8q24.3	8q24.3	604819	PUF60, FIR, SIAHBP1, VRJS	Poly-U-binding splicing factor, 60kD	PUF60	22827	ENSG00000179950		Verheij syndrome, 615583 (3), Autosomal dominant	Puf60 (MGI:1915209)
chr8	143829775	143840973	8q24.3	8q24.3	615563	NRBP2	Nuclear receptor-binding protein 2	NRBP2	340371	ENSG00000185189			
chr8	143857318	143879042	8q24.3	8q24.3	607553	EPPK1	Epiplakin 1	EPPK1	83481	ENSG00000261150			Eppk1 (MGI:2386306)
chr8	143915146	143976799	8q24	8q24.3	601282	PLEC1, PLEC, PLTN, EBS1, LGMD2Q, EBSOG, EBSPA, EBSMD, EBSND	Plectin 1	PLEC	5339	ENSG00000178209	mutation identified in 1 EBSND family	Epidermolysis bullosa simplex with muscular dystrophy, 226670 (3), Autosomal recessive; ?Epidermolysis bullosa simplex with nail dystrophy, 616487 (3), Autosomal recessive; Epidermolysis bullosa simplex with pyloric atresia, 612138 (3), Autosomal recessive; Epidermolysis bullosa simplex, Ogna type, 131950 (3), Autosomal dominant; Muscular dystrophy, limb-girdle, type 2Q, 613723 (3), Autosomal recessive	Plec (MGI:1277961)
chr8	143945190	143945278	8q24.3	8q24.3	613716	MIR661, MIRN661	Micro RNA 661	MIR661	724031				
chr8	143990057	143993414	8q24.3	8q24.3	138251	GRINA, NMDARA1	Glutamate receptor, ionotropic, N-methyl	GRINA	2907	ENSG00000178719			Grina (MGI:1913418)
chr8	144010991	144047113	8q24	8q24.3	610874	SPATC1	Spermatogenesis- and centriole-associated 1 (speriolin)	SPATC1	375686	ENSG00000186583			Spatc1 (MGI:1921531)
chr8	144051265	144064025	8q24.3	8q24.3	614243	OPLAH, OPLAHD	5-oxoprolinase (ATP-hydrolyzing)	OPLAH	26873	ENSG00000178814		5-oxoprolinase deficiency, 260005 (3), Autosomal recessive, Autosomal dominant	Oplah (MGI:1922725)
chr8	144064060	144080647	8q24.3	8q24.3	606491	EXOSC4, RRP41	Exosome component 4	EXOSC4	54512	ENSG00000178896			Exosc4 (MGI:1923576)
chr8	144082620	144086215	8q24	8q24.3	603048	GPAA1, GAA1, GPIBD15	Glycophosphatidylinositol anchor attachment protein 1	GPAA1	8733	ENSG00000197858		Glycosylphosphatidylinositol biosynthesis defect 15, 617810 (3)	Gpaa1 (MGI:1202392)
chr8	144095034	144097526	8q24.3	8q24.3	123980	CYC1, MC3DN6	Cytochrome c1	CYC1	1537	ENSG00000179091		Mitochondrial complex III deficiency, nuclear type 6, 615453 (3), Autosomal recessive	Cyc1 (MGI:1913695)
chr8	144098632	144104247	8q24.3	8q24.3	611885	SHARPIN, SIPL1	SHANK-associated RH domain interactor	SHARPIN	81858	ENSG00000179526			Sharpin (MGI:1913331)
chr8	144104401	144107611	8q24.3	8q24.3	610210	MAF1	Maf1, S. cerevisiae, homolog of	MAF1	84232	ENSG00000179632			Maf1 (MGI:1916127)
chr8	144262045	144291437	8q24	8q24.3	610596	BOP1, KIAA0124	Block of proliferation 1	BOP1	23246	ENSG00000261236			Bop1 (MGI:1334460)
chr8	144265059	144268482	8q24.3	8q24.3	609067	SCXA, SCX	Scleraxis, mouse, homolog of, A	SCX	642658	ENSG00000260428			Scx (MGI:102934)
chr8	144291568	144314725	8q24.3	8q24.3	140580	HSF1	Heat-shock transcription factor 1	HSF1	3297	ENSG00000185122			Hsf1 (MGI:96238)
chr8	144314582	144326918	8q24.3	8q24.3	604900	DGAT1, ARGP1, DIAR7	Diacylglycerol O-acyltransferase 1	DGAT1	8694	ENSG00000185000	mutation identified in 1 DIAR7 family	?Diarrhea 7, 615863 (3), Autosomal recessive	Dgat1 (MGI:1333825)
chr8	144330564	144336280	Chr.8	8q24.3	605858	SCRT1	Scratch, mouse, homolog of	SCRT1	83482	ENSG00000261678			Scrt1 (MGI:2176606)
chr8	144355427	144358522	8q24.3	8q24.3	609076	FBXL6, FBL6, FBL6A	F-box and leucine-rich repeat protein 6	FBXL6	26233	ENSG00000182325			Fbxl6 (MGI:1354705)
chr8	144358546	144361285	8q24.3	8q24.3	607882	SLC52A2, GPR172A, GPCR41, PAR1, FLJ11856, BVVLS2	Solute carrier family 52, riboflavin transporter, member 2	SLC52A2	79581	ENSG00000185803		Brown-Vialetto-Van Laere syndrome 2, 614707 (3), Autosomal recessive	Slc52a2 (MGI:1289288)
chr8	144412413	144417145	8q24.3	8q24.3	607059	SLC39A4, ZIP4	Solute carrier family 36 (zinc transporter), member 4	SLC39A4	55630	ENSG00000147804		Acrodermatitis enteropathica, 201100 (3), Autosomal recessive	Slc39a4 (MGI:1919277)
chr8	144423600	144428562	8q24.3	8q24.3	611952	VPS28	Vacuolar protein sorting 28, yeast, homolog of	VPS28	51160	ENSG00000160948			Vps28 (MGI:1914164)
chr8	144428779	144444487	8q24.3	8q24.3	604546	NFKBIL2, IKBR	Nuclear factor of kappa light chain gene enhancer in B cells inhibitor-like 2	TONSL	4796	ENSG00000160949			Tonsl (MGI:1919999)
chr8	144449581	144465647	8q24.3	8q24.3	616635	CYHR1, KIAA0496	Cysteine- and histidine-rich protein 1	CYHR1	50626	ENSG00000187954			Cyhr1 (MGI:1859320)
chr8	144466245	144474115	8q24.3	8q24.3	615216	KIFC2	Kinesin family member C2	KIFC2	90990	ENSG00000167702			Kifc2 (MGI:109187)
chr8	144473731	144476334	8q24.3	8q24.3	603621	FAST1	Forkhead activin signal transducer 1, Xenopus, homolog of	FOXH1	8928	ENSG00000160973			Foxh1 (MGI:1347465)
chr8	144502216	144507173	8q24.3	8q24.3	138200	GPT, GPT1, AAT1	Glutamic-pyruvate transaminase (alanine aminotransferase)	GPT	2875	ENSG00000167701			Gpt (MGI:95802)
chr8	144511283	144517827	8q24.3	8q24.3	603780	RECQL4, RTS, RECQ4	DNA helicase, RecQ-like 4	RECQL4	9401	ENSG00000160957		Baller-Gerold syndrome, 218600 (3), Autosomal recessive; RAPADILINO syndrome, 266280 (3), Autosomal recessive; Rothmund-Thomson syndrome, 268400 (3), Autosomal recessive	Recql4 (MGI:1931028)
chr8	144529178	144700519	8q24.3	8q24.3	615880	ARHGAP39, VILSE, KIAA1688	RHO GTPase-activating protein 39	ARHGAP39	80728	ENSG00000147799			Arhgap39 (MGI:107858)
chr8	144772223	144787370	8q24.12-q24.13	8q24.3	194526	ZNF34, KOX32	Zinc finger protein-34 (KOX32)	ZNF34	80778	ENSG00000196378			
chr8	144789764	144792445	8q	8q24.3	604177	RPL8	Ribosomal protein L8	RPL8	6132	ENSG00000161016			Rpl8 (MGI:1350927)
chr8	144827508	144848069	8q24	8q24.3	194531	ZNF7, KOX4	Zinc finger protein-7 (KOX4)	ZNF7	7553	ENSG00000147789			Zfp7 (MGI:99208)
chr8	144837977	144853577	8q24.3	8q24.3	608216	COMMD5, HCARG	COMM domain-containing protein 5	COMMD5	28991	ENSG00000170619			Commd5 (MGI:1913648)
chr8	144930357	144950887	8q24	8q24.3	601262	ZNF16, KOX9	Zinc finger protein-16 (KOX 9)	ZNF16	7564	ENSG00000170631			
chr8	0	145138636	Chr.8		608392	AIS3, VAMAS4	Autoimmune disease, susceptibility to, 3	AIS3	378427			{Autoimmune disease, susceptibility to, 3}, 608392 (2)	
chr8	0	145138636	Chr.8		147860	IFNB3	Interferon, beta-3, fibroblast				previously assigned to 2p23-qter		
chr8	0	145138636	Chr.8		194490	ZNF1	Zinc finger protein-1						
chr9	0	43000000	9p		158170	DEL9p, C9DELp	Chromosome 9p deletion syndrome					Chromosome 9p deletion syndrome, 158170 (4), Autosomal dominant	
chr9	0	2200000	9p24.3		154230	DEL9p24.3, C9DELp24.3, SRXY4	Chromosome 9p24.3 deletion syndrome					46XY sex reversal 4, 154230 (4)	
chr9	0	43000000	9p		606613	HDLCQ1	High density lipoprotein cholesterol level QTL 1	HDLCQ1	192144			[High density lipoprotein cholesterol level QTL 1], 606613 (2)	
chr9	0	9000000	9p24		614113	MRD2	Mental retardation, autosomal dominant 2				2 patients reported with genomic deletion or rearrangement including disruption of DOCK8	Mental retardation, autosomal dominant 2, 614113 (4), Autosomal dominant	
chr9	0	19900000	9p24-p22		610438	RLS3	Restless legs syndrome, susceptibility to, 3		100188812		associated with rs4626664 and rs1975197	{Restless legs syndrome 3}, 610438 (2)	
chr9	14474	30486	9p24.3	9p24.3	613632	WASHC1, WASH1	WASH complex, subunit 1	WASHC1	100287171	ENSG00000181404	pseudogenes on 1p, 15q, 16p, Xq/Yq		Washc1 (MGI:1916017)
chr9	116230	118416	9q21.11	9p24.3	601092	FOXD4, FKHL9	Forkhead box D4	FOXD4	2298	ENSG00000170122			Foxd4 (MGI:1347467)
chr9	121037	179082	9p24.3	9p24.3	611078	CBWD1	Cobalamin synthetase W domain-containing protein 1	CBWD1	55871	ENSG00000172785			Cbwd1 (MGI:2385089)
chr9	211295	465259	9p24	9p24.3	611432	DOCK8	Dedicator of cytokinesis 8	DOCK8	81704	ENSG00000107099		Hyper-IgE recurrent infection syndrome, autosomal recessive, 243700 (3), Autosomal recessive	Dock8 (MGI:1921396)
chr9	470290	746105	9p24.3	9p24.3	607704	KANK1, KANK, ANKRD15, KIAA0172, CPSQ2	KN motif- and ankyrin repeat domain-containing protein 1	KANK1	23189	ENSG00000107104		Cerebral palsy, spastic quadriplegic, 2, 612900 (3)	Kank1 (MGI:2147707)
chr9	841646	969089	9p24.3	9p24.3	602424	DMRT1, DMT1	Double sex and mab-3-related transcription factor-1	DMRT1	1761	ENSG00000137090			Dmrt1 (MGI:1354733)
chr9	976967	991731	9p24.3	9p24.3	614754	DMRT3, DMRTA3	Doublesex-and mab3-related transcription factor 3	DMRT3	58524	ENSG00000064218			Dmrt3 (MGI:2449470)
chr9	1003236	1057553	9p24.3	9p24.3	604935	DMRT2	Double sex and mab-3-related transcription factor-2	DMRT2	10655	ENSG00000173253			Dmrt2 (MGI:1330307)
chr9	2015218	2193623	9p24-p23	9p24.3	600014	SMARCA2, SNF2L2, NCBRS	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	SMARCA2	6595	ENSG00000080503		Nicolaides-Baraitser syndrome, 601358 (3), Autosomal dominant	Smarca2 (MGI:99603)
chr9	2621773	2656102	9p24	9p24.2	192977	VLDLR, CAMRQ1	Very low density lipoprotein receptor	VLDLR	7436	ENSG00000147852		Cerebellar hypoplasia and mental retardation with or without quadrupedal locomotion 1, 224050 (3), Autosomal recessive	Vldlr (MGI:98935)
chr9	2717525	2730036	9p24.2	9p24.2	607604	KCNV2, KV11.1, RCD3B	Potassium channel, voltage-gated, subfamily V, member 2	KCNV2	169522	ENSG00000168263		Retinal cone dystrophy 3B, 610356 (3), Autosomal recessive	Kcnv2 (MGI:2670981)
chr9	2804151	2844129	9p24.2	9p24.2	609960	KIAA0020, HLA-HA8	Minor histocompatibility antigen HA-8	PUM3	9933	ENSG00000080608			Pum3 (MGI:106253)
chr9	3218296	3526528	9p24.2	9p24.2	601337	RFX3	Regulatory factor X, 3	RFX3	5991	ENSG00000080298			Rfx3 (MGI:106582)
chr9	3824126	4310693	9p24.3-p23	9p24.2	610192	GLIS3, ZNF515, NDH	GLIS family zinc finger protein 3	GLIS3	169792	ENSG00000107249		Diabetes mellitus, neonatal, with congenital hypothyroidism, 610199 (3), Autosomal recessive	Glis3 (MGI:2444289)
chr9	4490426	4587468	9p24	9p24.2	133550	SLC1A1, EAAC1, SCZD18, DCBXA	Solute carrier family 1, member 1 (high-affinity glutamate transporter; excitatory amino acid carrier 1)	SLC1A1	6505	ENSG00000106688	mutation identified in 1 SCZD18 family	Dicarboxylic aminoaciduria, 222730 (3), Autosomal recessive; {?Schizophrenia susceptibility 18}, 615232 (3)	Slc1a1 (MGI:105083)
chr9	4600000	19900000	9p24.1-p22.1		613271	FECD7, FCD4	Corneal dystrophy, Fuchs endothelial, 7		100380875		max lod at D9S256	Corneal dystrophy, Fuchs endothelial, 7, 613271 (2)	
chr9	4662293	4665273	9p24.1	9p24.1	611666	PLPP6, PPAPDC2	PPAP2 domain-containing protein 2	PLPP6	403313	ENSG00000205808		Phospholipid phosphatase 6, 611666 (3)	Plpp6 (MGI:1921661)
chr9	4679552	4708398	9p24.1	9p24.1	610346	CDC37L1, HARC, FLJ20639	CDC37-like 1	CDC37L1	55664	ENSG00000106993			Cdc37l1 (MGI:1914322)
chr9	4709555	4742042	9p24.1	9p24.1	609290	AK3, AK3L1	Adenylate kinase 3	AK3	50808	ENSG00000147853			Ak3 (MGI:1860835)
chr9	4792833	4861076	9p24.1	9p24.1	611405	RCL1, RPCL1, RNAC	RNA terminal phosphate cyclase-like 1	RCL1	10171	ENSG00000120158			Rcl1 (MGI:1913275)
chr9	4850296	4850374	9p24.1	9p24.1	612512	MIR101-2, MIRN101-2	Micro RNA 101-2	MIR101-2	406894		another locus, MIRN101-1, on 1p31		
chr9	4985085	5128182	9p24	9p24.1	147796	JAK2, THCYT3	Janus kinase 2 (a protein-tyrosine kinase)	JAK2	3717	ENSG00000096968		{Budd-Chiari syndrome, somatic}, 600880 (3); Erythrocytosis, somatic, 133100 (3); Leukemia, acute myeloid, somatic, 601626 (3); Myelofibrosis, somatic, 254450 (3); Polycythemia vera, somatic, 263300 (3); Thrombocythemia 3, 614521 (3), Autosomal dominant, Somatic mutation	Jak2 (MGI:96629)
chr9	4992408	5185706	9p24	9p24.1	606414	INSL6	Insulin-like 6	INSL6	11172	ENSG00000120210			Insl6 (MGI:1351595)
chr9	5231418	5233966	9p24	9p24.1	600910	INSL4	Insulin-like 4, placenta	INSL4	3641	ENSG00000120211			
chr9	5299863	5340914	9pter-q12	9p24.1	179730	RLN1	Relaxin, H1	RLN1	6013	ENSG00000107018			Rln1 (MGI:97931)
chr9	5299863	5339437	9pter-q12	9p24.1	179740	RLN2	Relaxin, H2	RLN2	6019	ENSG00000107014			
chr9	5450502	5470566	9p24	9p24.1	605402	CD274, PDCD1LG1, B7H1	CD274 molecule	CD274	29126	ENSG00000120217			Cd274 (MGI:1926446)
chr9	5510437	5571281	9p24.2	9p24.1	605723	PDCD1L2, PDL2	Programmed cell death 1 ligand 2	PDCD1LG2	80380	ENSG00000197646			Pdcd1lg2 (MGI:1930125)
chr9	5629029	5778632	9p24.1	9p24.1	610354	CIP150, KIAA1432	Connexin 43-interacting protein, 150kD	RIC1	57589	ENSG00000107036			Ric1 (MGI:1924893)
chr9	5764060	5867090	9p24	9p24.1	611156	ERMP1, KIAA1815, FXNA	Endoplasmic reticulum metallopeptidase 1	ERMP1	79956	ENSG00000099219			Ermp1 (MGI:106250)
chr9	5890908	5909821	9p24.1	9p24.1	605513	MLANA, MART1	Melan A	MLANA	2315	ENSG00000120215			Mlana (MGI:108454)
chr9	6214590	6257982	9p24.1	9p24.1	608678	IL33, C9orf26, NFEHEV	Interleukin 33	IL33	90865	ENSG00000137033			Il33 (MGI:1924375)
chr9	6328348	6331899	9p24.1	9p24.1	617567	TPD52L3	Tumor protein D52-like 3	TPD52L3	89882	ENSG00000170777			Trpd52l3 (MGI:1913995)
chr9	6413147	6507055	9p24.1-p23	9p24.1	615211	UHRF2, NIRF	Ubiquitin-like protein containing PDH and RING finger domains 2, E3 ubiquitin protein ligase	UHRF2	115426	ENSG00000147854			Uhrf2 (MGI:1923718)
chr9	6532463	6645691	9p22	9p24.1	238300	GLDC, HYGN1, GCSP, GCE, NKH	Glycine dehydrogenase (decarboxylating; glycine decarboxylase, glycine cleavage system protein P)	GLDC	2731	ENSG00000178445		Glycine encephalopathy, 605899 (3), Autosomal recessive	Gldc (MGI:1341155)
chr9	6720862	7175647	9p24.1	9p24.1	605469	KDM4C, JMJD2C, GASC1, KIAA0780	Lysine-specific demethylase 4C	KDM4C	23081	ENSG00000107077			Kdm4c (MGI:1924054)
chr9	7796489	7799805	9p24.1	9p24.1	617261	TMEM261, DMAC1, C9orf123	Transmembrane protein 261	DMAC1	90871	ENSG00000137038			Dmac1 (MGI:1914178)
chr9	8314245	10612840	9p24.3-p23	9p24-p23	601598	PTPRD, PTPD, HPTP	Protein tyrosine phosphatase, receptor type, delta polypeptide	PTPRD	5789	ENSG00000153707			
chr9	9000000	28000000	9p23-p21.2		613685	DFNB83	Deafness, autosomal recessive 83	DFNB83	100359400		between rs4742645 and rs1471364	Deafness, autosomal recessive 83, 613685 (2), Autosomal recessive	
chr9	9000000	43000000	9p23-p11		601992	FRDA2	Friedreich ataxia 2	FRDA2	2420			Friedreich ataxia 2, 601992 (2), Autosomal recessive	
chr9	9000000	36300000	9p23-p13.3		614208	MRT16	Mental retardation, autosomal recessive 16		100689014		between rs10738277 and rs12376565	Mental retardation, autosomal recessive 16, 614208 (2), Autosomal recessive	
chr9	12693374	12710265	9p23	9p23	115501	TYRP1, CAS2, GP75, SHEP11	Tyrosinase-related protein 1	TYRP1	7306	ENSG00000107165		Albinism, oculocutaneous, type III, 203290 (3), Autosomal recessive; [Skin/hair/eye pigmentation, variation in, 11 (Melanesian blond hair)], 612271 (3)	Tyrp1 (MGI:98881)
chr9	12774993	12823059	9p23	9p23	616130	LURAP1L, LRAP35B	Leucine-rich adaptor protein 1-like	LURAP1L	286343	ENSG00000153714			Lurap1l (MGI:106510)
chr9	13105295	13279712	9p24-p22	9p23	603785	MPDZ, MUPP1, HYC2	Multiple PDZ domain protein	MPDZ	8777	ENSG00000107186		Hydrocephalus, nonsyndromic, autosomal recessive 2, 615219 (3), Autosomal recessive	Mpdz (MGI:1343489)
chr9	14081842	14398982	9p24.1	9p23-p22	600728	NFIB	Nuclear factor I/B	NFIB	4781	ENSG00000147862			Nfib (MGI:103188)
chr9	14200000	33200000	9p22-p21		608652	DFNA47, DFNB83	Deafness, autosomal dominant 47	DFNA47	246289		between D9S268 and D9S942; possibly allelic to DFNB83	Deafness, autosomal dominant 47, 608652 (2), Autosomal dominant	
chr9	14200000	33200000	9p22-p21		247640	LALL	Lymphomatous acute lymphoblastic leukemia		8009			Leukemia, acute lymphoblastic, 247640 (2), Autosomal recessive	
chr9	14588796	14693545	9p22.3	9p22.3	614605	ZDHHC21, DHHC21	Zinc finger DHHC domain-containing protein 21	ZDHHC21	340481	ENSG00000175893			Zdhhc21 (MGI:1915518)
chr9	14715081	14724307	9p22	9p22.3	603777	CER1	Cerebrus 1, Xenopus, homolog of	CER1	9350	ENSG00000147869			Cer1 (MGI:1201414)
chr9	14734665	14911652	9p22.3	9p22.3	608944	FREM1, C9orf154, BNAR, MOTA, TRIGNO2	FRAS1-related extracellular matrix protein 1	FREM1	158326	ENSG00000164946		Bifid nose with or without anorectal and renal anomalies, 608980 (3); Manitoba oculotrichoanal syndrome, 248450 (3), Autosomal recessive; Trigonocephaly 2, 614485 (3), Autosomal dominant	Frem1 (MGI:2670972)
chr9	15167203	15307359	9p22.3	9p22.3	613574	TTC39B	Tetratricopeptide repeat domain 39B	TTC39B	158219	ENSG00000155158			Ttc39b (MGI:1917113)
chr9	15422783	15466750	9p22.3	9p22.3	602348	SNAPC3, SNAP50	Small nuclear RNA-activating protein complex, polypeptide 3	SNAPC3	6619	ENSG00000164975			Snapc3 (MGI:1916338)
chr9	15464065	15511018	9p22.2	9p22.3	603620	PSIP1, LEDGF	PC4- and SFRS1-interacting protein 1	PSIP1	11168	ENSG00000164985			Psip1 (MGI:2142116)
chr9	16409502	16870787	9p22.1	9p22.3-p22.2	608669	BNC2	Basonuclin 2	BNC2	54796	ENSG00000173068			Bnc2 (MGI:2443805)
chr9	17134990	17510019	9p22.2	9p22.2	611870	CNTLN, C9orf101, C9orf39	Centlein	CNTLN	54875	ENSG00000044459			Cntln (MGI:2443104)
chr9	17578953	17797128	9p22	9p22.2	604465	SH3GL2, SH3P4	SH3 domain, GRB2-like, 2	SH3GL2	6456	ENSG00000107295			Sh3gl2 (MGI:700009)
chr9	17906514	18910949	9p22.1-p21.2	9p22.2-p22.1	609198	ADAMTSL1	ADAMTS-like protein 1	ADAMTSL1	92949	ENSG00000178031			Adamtsl1 (MGI:1924989)
chr9	18500000	19900000	9p22.1		609790	AD11	Alzheimer disease 11		100188795		between D9S157 and D9S259	Alzheimer disease-11, 609790 (2)	
chr9	18927659	19049505	9p22.1	9p22.1	616292	SAXO1, FAM154A	Stabilizer of axonemal microtubules 1	SAXO1	158297	ENSG00000155875			Saxo1 (MGI:1923061)
chr9	19049373	19051024	9p22.1	9p22.1	612194	RRAGA, RAGA, FIP1	Ras-related GTP-binding protein A	RRAGA	10670	ENSG00000155876			Rraga (MGI:1915691)
chr9	19053136	19102941	9p22.1	9p22.1	613433	HAUS6, DGT6, FAM29A	HAUS, augmin-like complex, subunit 6	HAUS6	54801	ENSG00000147874			Haus6 (MGI:1923389)
chr9	19063655	19063785	9p22.1	9p22.1	615646	SCARNA8	Small Cajal body-specific RNA 8	SCARNA8	677776				
chr9	19108390	19127605	9p22.1	9p22.1	103195	PLIN2	Perilipin 2	PLIN2	123	ENSG00000147872			Plin2 (MGI:87920)
chr9	19376255	19380236	9p21	9p22.1	180460	RPS6	Ribosomal protein S6	RPS6	6194	ENSG00000137154			Rps6 (MGI:98159)
chr9	19408926	19455172	9p22.1	9p22.1	613492	ACER2	Alkaline ceramidase 2	ACER2	340485	ENSG00000177076			Acer2 (MGI:1920932)
chr9	19507451	20307887	9p22	9p22.1-p21.3	609838	SLC24A2, NCKX2	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	SLC24A2	25769	ENSG00000155886			Slc24a2 (MGI:1923626)
chr9	19900000	33200000	9p21		611891	AAA3	Aneurysm, familial abdominal 3		100188857		associated with rs10757278	{Aneurysm, familial abdominal 3}, 611891 (2)	
chr9	19900000	33200000	9p21		611892	ANIB6	Aneurysm, intracranial berry, 6		100188858		associated with rs10757278	{Aneurysm, intracranial berry, 6}, 611892 (2)	
chr9	19900000	33200000	9p21		613062	BCC5	Basal cell carcinoma, susceptibility to, 5		100307122		associated with rs2151280	{Basal cell carcinoma, susceptibility to, 5}, 613062 (2)	
chr9	19900000	33200000	9p21		611139	CHDS8	Coronary heart disease, susceptibility to, 8		100188836		strongest linkage with dbSNP rs1333049	{Coronary heart disease, susceptibility to, 8}, 611139 (2)	
chr9	19900000	25600000	9p21.3		613030	GLM5	Glioma susceptibility 5		100415894		associated with rs4977756	{Glioma susceptibility 5}, 613030 (2)	
chr9	19900000	33200000	9p21		612099	MFT2, TEM	Trichoepithelioma, multiple familial, 2		100188881		max lod at D9S171	Trichoepithelioma, multiple familial, 2, 612099 (2)	
chr9	20341664	20622542	9p22	9p21.3	159558	MLLT3, AF9	Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 3	MLLT3	4300	ENSG00000171843	fuses with ALL1		Mllt3 (MGI:1917372)
chr9	20658308	20995954	9p21.3	9p21.3	614606	FOCAD, KIAA1797	Focadhesin	FOCAD	54914	ENSG00000188352			Focad (MGI:2676921)
chr9	21003620	21031711	9p21.3	9p21.3	615941	PTPLAD2, HACD4	Protein tyrosine phosphatase-like A domain-containing protein 2	HACD4	401494	ENSG00000188921			Hacd4 (MGI:1914025)
chr9	21077104	21077962	9p21	9p21.3	147640	IFNB1	Interferon, beta-1, fibroblast	IFNB1	3456	ENSG00000171855	distal to IFL; ?9p23-p22; IFF duplicate in some		Ifnb1 (MGI:107657)
chr9	21140631	21141900	9p21	9p21.3	147553	IFNW1	Interferon, omega-1	IFNW1	3467	ENSG00000177047	pseudogene IFNWP2; interspersed with IFNA		
chr9	21165636	21166659	9p22	9p21.3	147584	IFNA21	Interferon, alpha-21	IFNA21	3452	ENSG00000137080			
chr9	21186617	21187598	9p22	9p21.3	147564	IFNA4	Interferon, alpha-4	IFNA4	3441	ENSG00000236637			Ifnab,Ifna13,Ifna14,Ifna5,Ifna11,Ifna6,Ifna12,Ifna7,Ifna1,Ifna15,Ifna2,Ifna16,Ifna9 (MGI:107659,MGI:3649418,MGI:107666,MGI:107668,MGI:107661,MGI:107662,MGI:2676324,MGI:107663,MGI:3641425,MGI:109210,MGI:1097683,MGI:3649260,MGI:2667155)
chr9	21201468	21202204	9p22	9p21.3	147567	IFNA7	Interferon, alpha-7	IFNA7	3444	ENSG00000214042			
chr9	21206180	21207142	9p22	9p21.3	147577	IFNA10	Interferon, alpha-10	IFNA10	3446	ENSG00000186803			
chr9	21216372	21217310	9p22	9p21.3	147580	IFNA16	Interferon, alpha-16	IFNA16	3449	ENSG00000147885			
chr9	21227242	21228221	9p22	9p21.3	147583	IFNA17	Interferon, alpha-17	IFNA17	3451	ENSG00000234829			
chr9	21239201	21239978	9p22	9p21.3	147579	IFNA14	Interferon, alpha-14	IFNA14	3448	ENSG00000228083			
chr9	21304613	21305312	9p22	9p21.3	147565	IFNA5	Interferon, alpha-5	IFNA5	3442	ENSG00000147873			
chr9	21329670	21335431	9p21.3	9p21.3	611201	KLHL9, KIAA1354	Kelch-like 9	KLHL9	55958	ENSG00000198642			Klhl9 (MGI:2180122)
chr9	21350317	21350886	9p22	9p21.3	147566	IFNA6	Interferon, alpha-6	IFNA6	3443	ENSG00000120235			
chr9	21367371	21368075	9p22	9p21.3	147578	IFNA13	Interferon, alpha-13	IFNA13	3447	ENSG00000233816			
chr9	21384254	21385396	9p22	9p21.3	147562	IFNA2	Interferon, alpha-2	IFNA2	3440	ENSG00000188379			
chr9	21409146	21410184	9p22	9p21.3	147568	IFNA8	Interferon, alpha-8	IFNA8	3445	ENSG00000120242			
chr9	21440453	21441315	9p22	9p21.3	147660	IFNA1, IFNA@	Interferon, alpha-1	IFNA1	3439	ENSG00000197919	very close to IFF by Fd, LD; 15-30 genes	Interferon, alpha, deficiency (1)	
chr9	21454267	21559797	9p21.3	9p21.3	616356	MIR31HG, LOC554202	Micro RNA 31 host gene, noncoding	MIR31HG	554202				
chr9	21480838	21482312	9p21	9p21.3	615223	IFNE, INFE1, IFNT1	Interferon, epsilon	IFNE	338376	ENSG00000184995			Ifne (MGI:2667156)
chr9	21512114	21512184	9p21.3	9p21.3	612155	MIR31, MIRN31	Micro RNA 31	MIR31	407035				
chr9	21802635	21865970	9p21	9p21.3	156540	MTAP, DMSMFH	Methylthioadenosine phosphorylase	MTAP	4507	ENSG00000099810		Diaphyseal medullary stenosis with malignant fibrous histiocytoma, 112250 (3), Autosomal dominant	Mtap (MGI:1914152)
chr9	21967751	21995042	9p21	9p21.3	600160	CDKN2A, MTS1, P16, MLM, CMM2	Cyclin-dependent kinase inhibitor 2A (p16, inhibits CDK4)	CDKN2A	1029	ENSG00000147889		Melanoma and neural system tumor syndrome, 155755 (3), Autosomal dominant; {Melanoma, cutaneous malignant, 2}, 155601 (3), Autosomal dominant; Orolaryngeal cancer, multiple (3); Pancreatic cancer/melanoma syndrome, 606719 (3), Autosomal dominant	Cdkn2a (MGI:104738)
chr9	21994790	22121096	9p21	9p21.3	613149	CDKN2BAS, ANRIL	CDKN2B antisense RNA	CDKN2B-AS1	100048912				
chr9	22002902	22009312	9p21	9p21.3	600431	CDKN2B, MTS2, P15, INK4B	Cyclin-dependent kinase inhibitor 2B (p15, inhibits CDK4)	CDKN2B	1030	ENSG00000147883	tandem with MTS1		Cdkn2b (MGI:104737)
chr9	22446840	22452472	9p21.3	9p21.3	614803	DMRTA1, DMRT4	Doublesex- and MAB3-related transcription factor A1	DMRTA1	63951	ENSG00000176399			Dmrta1 (MGI:2653627)
chr9	23690098	23850707	9p21	9p21.3	601673	ELAVL2, HELN1, HUB	Embryonic lethal, abnormal vision, Drosophila, homolog of, like-2 (Hu antigen B)	ELAVL2	1993	ENSG00000107105			Elavl2 (MGI:1100887)
chr9	25600000	28000000	9p21.2		617651	EMICER1	EQTN, MOB3B, IFNK, and C9orf72 enhancer RNA I, noncoding						
chr9	25676388	25678857	9p21	9p21.2	610529	TUSC1, TSG9	Tumor suppressor candidate 1	TUSC1	286319	ENSG00000198680			Tusc1 (MGI:2684283)
chr9	26903369	26947472	9p21.2	9p21.2	603873	PLAA, PLAP, NDMSBA	Phospholipase A2-activating protein	PLAA	9373	ENSG00000137055		Neurodevelopmental disorder with progressive microcephaly, spasticity, and brain anomalies, 617527 (3), Autosomal recessive	Plaa (MGI:104810)
chr9	26946989	27066133	9p21.2	9p21.2	608040	IFT74, CCDC2, CMG1, BBS20	Intraflagellar transport 74, Chlamydomonas, homolog of	IFT74	80173	ENSG00000096872	mutation identified in 1 BBS20 patient	?Bardet-Biedl syndrome 20, 617119 (3), Autosomal recessive	Ift74 (MGI:1914944)
chr9	27109140	27230177	9p21	9p21.2	600221	TEK, TIE2, VMCM, GLC3E	TEK tyrosine kinase, endothelial	TEK	7010	ENSG00000120156		Glaucoma 3, primary congenital, E, 617272 (3), Autosomal dominant; Venous malformations, multiple cutaneous and mucosal, 600195 (3), Autosomal dominant	Tek (MGI:98664)
chr9	27284653	27297138	9p21.2	9p21.2	617653	EQTN, AFAF, SPACA8, C9orf11	Equatorin	EQTN	54586	ENSG00000120160			Eqtn (MGI:1915003)
chr9	27325208	27529851	9p21.2	9p21.2	617652	MOB3B, MOB1D, MOBKL2B, C9orf35	MOB kinase activator 3B	MOB3B	79817	ENSG00000120162			Mob3b (MGI:2664539)
chr9	27524313	27526497	9p21.2	9p21.2	615326	IFNK	Interferon, kappa	IFNK	56832	ENSG00000147896			Ifnk (MGI:2683287)
chr9	27546545	27573865	9p21	9p21.2	614260	C9orf72, FTDALS1, FTDALS, ALSFTD	Chromosome 9 open reading frame 72	C9orf72	203228	ENSG00000147894		Frontotemporal dementia and/or amyotrophic lateral sclerosis 1, 105550 (3), Autosomal dominant	3110043O21Rik (MGI:1920455)
chr9	27937616	29215242	9p21.2-p21.1	9p21.2-p21.1	609793	LRRN6C, LINGO2, LERN3	Leucine-rich repeat protein, neuronal, 6C	LINGO2	158038	ENSG00000174482			Lingo2 (MGI:2442298)
chr9	28888878	28888954	9p21.1	9p21.1	616137	MIR873	Micro RNA 873	MIR873	100126316				
chr9	32384602	32450835	9p21.2	9p21.1	100880	ACO1, IREB1	Aconitase, soluble (iron-responsive element-binding protein-1)	ACO1	48	ENSG00000122729			Aco1 (MGI:87879)
chr9	32455301	32526323	9p21.1	9p21.1	609631	DDX58, RIGI, SGMRT2	DEAD box polypeptide 58	DDX58	23586	ENSG00000107201		Singleton-Merten syndrome 2, 616298 (3), Autosomal dominant	Ddx58 (MGI:2442858)
chr9	32540543	32552627	9p21	9p21.1	609507	TOPORS, P53BP3, LUN, RP31	Topoisomerase I-binding arginine/serine-rich protein	TOPORS	10210	ENSG00000197579		Retinitis pigmentosa 31, 609923 (3)	Topors (MGI:2146189)
chr9	32883871	33025130	9p13.3	9p21.1	606350	APTX, AOA, AOA1	Aprataxin	APTX	54840	ENSG00000137074		Ataxia, early-onset, with oculomotor apraxia and hypoalbuminemia, 208920 (3), Autosomal recessive	Aptx (MGI:1913658)
chr9	33041851	33076715	9p21.1	9p21.1	617811	SMU1	DNA replication regulator and spliceosomal factor SMU1	SMU1	55234	ENSG00000122692			Smu1 (MGI:1915546)
chr9	33110640	33167357	9p13	9p21.1	137060	B4GALT1, GGTB2, GT1, GTB, CDG2D	Glycoprotein-4-beta-galactosyltransferase-2 (EC 2.4.1.22)	B4GALT1	2683	ENSG00000086062		Congenital disorder of glycosylation, type IId, 607091 (3), Autosomal recessive	B4galt1 (MGI:95705)
chr9	33200000	39000000	9p13		609403	PEE3	Preeclampsia/eclampsia 3		780909			Preeclampsia/eclampsia 3, 609403 (2)	
chr9	33240163	33248566	9p13.3	9p13.3	613929	SPINK4, PEC60	Serine protease inhibitor, Kazal-type, 4	SPINK4	27290	ENSG00000122711			Spink4 (MGI:1341848)
chr9	33252470	33264760	9p12	9p13.3	601497	BAG1	BCL2-associated athanogene	BAG1	573	ENSG00000107262			Bag1 (MGI:108047)
chr9	33264878	33282068	9p13.3	9p13.3	610900	CHMP5	CHMP family, member 5	CHMP5	51510	ENSG00000086065			Chmp5 (MGI:1924209)
chr9	33290416	33371162	9p13.3	9p13.3	603255	NFX1	Nuclear transcription factor, X box-binding, protein 1	NFX1	4799	ENSG00000086102			Nfx1 (MGI:1921414)
chr9	33383134	33402681	9p13	9p13.3	602974	AQP7, GLYCQTL	Aquaporin-7	AQP7	364	ENSG00000165269		[Glycerol quantitative trait locus], 614411 (3), Autosomal recessive	Aqp7 (MGI:1314647)
chr9	33441153	33447632	9p13	9p13.3	600170	AQP3	Aquaporin-3	AQP3	360	ENSG00000165272	incorrectly mapped to chr.7	[Blood group GIL], 607457 (3)	Aqp3 (MGI:1333777)
chr9	33460810	33473942	9p13	9p13.3	611532	NOL6, NRAP	Nucleolar protein 6	NOL6	65083	ENSG00000165271			Nol6 (MGI:2140151)
chr9	33673503	33677419	9p13.3	9p13.3	613531	PTENP1	Phosphatase and tensin homolog pseudogene 1 (functional)	PTENP1	11191				
chr9	33750465	33799230	9p13	9p13.3	613578	PRSS3, TRY3, T9	Protease, serine, 3	PRSS3	5646	ENSG00000010438			Try5,Try4 (MGI:102756,MGI:102757)
chr9	33817163	33920402	9p22.1	9p13.3	612506	UBE2R2, UBC3B	Ubiquitin-conjugating enzyme E2R 2	UBE2R2	54926	ENSG00000107341			Ube2r2 (MGI:1914865)
chr9	34179004	34252522	9p22-p21	9p13.3	609787	UBAP1, UBAP	Ubiquitin-associated protein 1	UBAP1	51271	ENSG00000165006			Ubap1 (MGI:2149543)
chr9	34252032	34333519	9p13.3	9p13.3	613747	KIF24	Kinesin family member 24	KIF24	347240	ENSG00000186638			Kif24 (MGI:1918345)
chr9	34329505	34343712	9p13	9p13.3	602852	NUDT2, APAH1	Nudix-type motif 1 (AP4A hydrolase-1)	NUDT2	318	ENSG00000164978			Nudt2 (MGI:1913651)
chr9	34458751	34520988	9p13.3	9p13.3	604366	DNAI1, CILD1, ICS, PCD	Dynein, axonemal, intermediate chain 1	DNAI1	27019	ENSG00000122735		Ciliary dyskinesia, primary, 1, with or without situs inversus, 244400 (3), Autosomal recessive	Dnaic1 (MGI:1916172)
chr9	34551431	34590385	9p13	9p13.3	118946	CNTFR	Ciliary neurotrophic factor receptor	CNTFR	1271	ENSG00000122756			Cntfr (MGI:99605)
chr9	34613544	34620522	9p13	9p13.3	607387	DCTN3, DCTN22	Dynactin 3	DCTN3	11258	ENSG00000137100			Dctn3 (MGI:1859251)
chr9	34634721	34637825	9p13	9p13.3	601978	SIGMAR1, SRBP, ALS16, DSMA2	Sigma nonopioid intracellular receptor 1	SIGMAR1	10280	ENSG00000147955	mutation identified in 1 ALS16 family and 1 DSMA2 family	?Amyotrophic lateral sclerosis 16, juvenile, 614373 (3), Autosomal recessive; ?Spinal muscular atrophy, distal, autosomal recessive, 2, 605726 (3), Autosomal recessive	Sigmar1 (MGI:1195268)
chr9	34646588	34650597	9p13	9p13.3	606999	GALT	Galactose-1-phosphate uridyltransferase	GALT	2592	ENSG00000213930		Galactosemia, 230400 (3), Autosomal recessive	Galt (MGI:95638)
chr9	34652184	34661901	9p13	9p13.3	600939	IL11RA, CRSDA	Interleukin-11 receptor, alpha	IL11RA	3590	ENSG00000137070		Craniosynostosis and dental anomalies, 614188 (3), Autosomal recessive	Il11ra1,Gm13305,Gm2002,Il11ra2 (MGI:3780172,MGI:107426,MGI:3801997,MGI:109123)
chr9	34661882	34662691	9p13	9p13.3	604833	CCL27, SCYA27, ILC, CTACK	Chemokine, C-C motif, ligand 27	CCL27	10850	ENSG00000213927			Gm2506,Gm13306,Ccl27b (MGI:1891389,MGI:3713752,MGI:3780673)
chr9	34689569	34691276	9p13	9p13.3	602227	CCL19, SCYA19, ELC, MIP3B	Chemokine, C-C motif, ligand 19	CCL19	6363	ENSG00000172724			Ccl19-ps1,Gm12407,Gm13309,Gm21104,Gm2457,Gm2564,Ccl19,Gm2023 (MGI:5434459,MGI:3708691,MGI:1891387,MGI:3780624,MGI:1346316,MGI:3780192,MGI:3693096,MGI:3702000)
chr9	34709004	34710166	9p13	9p13.3	602737	CCL21, SCYA21, SLC	Chemokine, C-C motif, ligand 21	CCL21	6366	ENSG00000137077			Ccl21c,Gm1987,Gm13304,Gm10591,Ccl21b,Ccl21a,Gm21541 (MGI:1349183,MGI:3711256,MGI:1349182,MGI:5434896,MGI:3710514,MGI:1891386,MGI:3780156)
chr9	34989640	34998432	9p13.3	9p13.3	611328	DNAJB5, KIAA1045, HSC40	DNAJ/HSP40 homolog, subfamily B, member 5	DNAJB5	25822	ENSG00000137094			Dnajb5 (MGI:1930018)
chr9	35056063	35072741	9p13-p12	9p13.3	601023	VCP, IBMPFD1, ALS14, CMT2Y	Valosin-containing protein	VCP	7415	ENSG00000165280		Amyotrophic lateral sclerosis 14, with or without frontotemporal dementia, 613954 (3); Charcot-Marie-Tooth disease, type 2Y, 616687 (3), Autosomal dominant; Inclusion body myopathy with early-onset Paget disease and frontotemporal dementia 1, 167320 (3), Autosomal dominant	Vcp (MGI:99919)
chr9	35073837	35080015	9p13	9p13.3	602956	XRCC9, FANCG	X-ray repair, complementing defective, in Chinese hamster, 9	FANCG	2189	ENSG00000221829		Fanconi anemia, complementation group G, 614082 (3)	Fancg (MGI:1926471)
chr9	35085495	35096600	9p13	9p13.3	614730	PIGO, HPMRS2	Phosphatidylinositol glycan, class O	PIGO	84720	ENSG00000165282		Hyperphosphatasia with mental retardation syndrome 2, 614749 (3), Autosomal recessive	Pigo (MGI:1861452)
chr9	35099775	35103194	9p13.1	9p13.3	608292	STOML2	Stomatin-like protein 2	STOML2	30968	ENSG00000165283			Stoml2 (MGI:1913842)
chr9	35161968	35405337	Chr.9	9p13.3	605836	UNC13, MUNC13	UNC13, C. elegans, homolog of	UNC13B	10497	ENSG00000198722			Unc13b (MGI:1342278)
chr9	35489832	35561897	9p13.1	9p13.3	611053	RUSC2, KIAA0375, IPORIN, MRT61	RUN and SH3 domain-containing 2	RUSC2	9853	ENSG00000198853		Mental retardation, autosomal recessive 61, 617773 (3), Autosomal recessive	Rusc2 (MGI:2140371)
chr9	35605283	35610040	9p13	9p13.3	601782	TESK1	Testis-specific protein kinase-1	TESK1	7016	ENSG00000107140			Tesk1 (MGI:1201675)
chr9	35609978	35618426	9p	9p13.3	107272	CD72, LYB2	CD72 antigen	CD72	971	ENSG00000137101			Cd72 (MGI:88345)
chr9	35649297	35650949	9p13-p12	9p13.3	604964	SIT	SHP2-interacting transmembrane adaptor protein	SIT1	27240	ENSG00000137078			Sit1 (MGI:1889342)
chr9	35657750	35658017	9p21-p12	9p13.3	157660	RMRP, RMRPR, CHH	Mitochondrial RNA-processing endoribonuclease	RMRP	6023			Anauxetic dysplasia 1, 607095 (3), Autosomal recessive; Cartilage-hair hypoplasia, 250250 (3), Autosomal recessive; Metaphyseal dysplasia without hypotrichosis, 250460 (3), Autosomal recessive	
chr9	35673808	35681158	9p13.3	9p13.3	603179	CA9, MN	Carbonic anhydrase IX	CA9	768	ENSG00000107159	previously assigned to 17q21.2		Car9 (MGI:2447188)
chr9	35681992	35690055	9p13.2-p13.1	9p13.3	190990	TPM2, TMSB, AMCD1, DA1, DA2B, NEM4	Tropomyosin-2, beta	TPM2	7169	ENSG00000198467		Arthrogryposis multiplex congenita, distal, type 1, 108120 (3), Autosomal dominant; Arthrogryposis, distal, type 2B, 601680 (3), Autosomal dominant; CAP myopathy 2, 609285 (3), Autosomal dominant; Nemaline myopathy 4, autosomal dominant, 609285 (3), Autosomal dominant	
chr9	35697336	35732394	9p	9p13.3	186745	TLN1	Talin 1	TLN1	7094	ENSG00000137076			Tln1 (MGI:1099832)
chr9	35732319	35737007	9p13.3	9p13.3	606443	CREB3, LZIP	cAMP response element-binding protein 3	CREB3	10488	ENSG00000107175			Creb3 (MGI:99946)
chr9	35736861	35749235	9p13.3	9p13.3	609471	GBA2, KIAA1605, SPG46	Glucosidase, beta, acid 2	GBA2	57704	ENSG00000070610		Spastic paraplegia 46, autosomal recessive, 614409 (3), Autosomal recessive	Gba2 (MGI:2654325)
chr9	35749279	35753266	9p13.3	9p13.3	615742	RGP1, KIAA0258	RGP1 retrograde golgi transport, S. cerevisiae, homolog of	RGP1	9827	ENSG00000107185			Rgp1 (MGI:1915956)
chr9	35752989	35754276	9p13.3	9p13.3	612191	MSMP, PSMP	Microseminoprotein, prostate-associated	MSMP	692094	ENSG00000215183			Msmp (MGI:3652339)
chr9	35782085	35809730	9p21-p12	9p13.3	108961	NPR2, ANPRB, AMDM, ECDM, SNSK	Natiuretic peptide receptor 2	NPR2	4882	ENSG00000159899		Acromesomelic dysplasia, Maroteaux type, 602875 (3), Autosomal recessive; Epiphyseal chondrodysplasia, Miura type, 615923 (3), Autosomal dominant; Short stature with nonspecific skeletal abnormalities, 616255 (3), Autosomal dominant	Npr2 (MGI:97372)
chr9	35807784	35812271	9p13-p12	9p13.3	605731	SPAG8, SMP1	Sperm-associated antigen 8	SPAG8	26206	ENSG00000137098			Spag8 (MGI:3056295)
chr9	35812959	35815478	9p11.2	9p13.3	609997	HINT2	Histidine triad nucleotide-binding protein 2	HINT2	84681	ENSG00000137133			Hint2 (MGI:1916167)
chr9	35825816	35865514	9p13.3	9p13.3	616888	TMEM8B, NGX6, NAG5	Transmembrane protein 8B	TMEM8B	51754	ENSG00000137103			Tmem8b (MGI:2441680)
chr9	35909482	35911619	9p13.3	9p13.3	617627	SPAAR, LINC00961	Small regulatory polypeptide of amino acid response	SPAAR	158376	ENSG00000235387			
chr9	36036904	36124454	9p13-p12	9p13.3	605227	RECK, ST15	Reversion-inducing cysteine-rich protein with kazal motifs (suppressor of tumorigenicity 15)	RECK	8434	ENSG00000122707			Reck (MGI:1855698)
chr9	36136535	36163912	9p13.3	9p13.3	607141	GLIPR2, GAPR1, C9orf19	GLI pathogenesis-related 2	GLIPR2	152007	ENSG00000122694			Glipr2 (MGI:1917770)
chr9	36169391	36171333	9p13.3	9p13.3	603960	CCIN	Calicin	CCIN	881	ENSG00000185972			Ccin (MGI:3045316)
chr9	36190854	36212061	9p13.3	9p13.3	118960	CLTA	Clathrin, light polypeptide (Lca)	CLTA	1211	ENSG00000122705	previously mapped to 12q23-q24		Clta (MGI:894297)
chr9	36214440	36277055	9p13.3	9p13.3	603824	GNE, GLCNE, IBM2, DMRV, NM	UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase	GNE	10020	ENSG00000159921		Nonaka myopathy, 605820 (3), Autosomal recessive; Sialuria, 269921 (3), Autosomal dominant	Gne (MGI:1354951)
chr9	36336397	36487383	9p13	9p13.2	612488	RNF38	Ring finger protein 38	RNF38	152006	ENSG00000137075			Rnf38 (MGI:1920719)
chr9	36572861	36677682	Chr.9	9p13.2	607025	MELK, KIAA0175	Maternal embryonic leucine zipper kinase	MELK	9833	ENSG00000165304			Melk (MGI:106924)
chr9	36833274	37034478	9p13	9p13.2	167414	PAX5, BSAP, ALL3	Paired box homeotic gene-5 (B-cell lineage specific activator protein)	PAX5	5079	ENSG00000196092		{Leukemia, acute lymphoblastic, susceptibility to, 3}, 615545 (3)	Pax5 (MGI:97489)
chr9	37422434	37438951	9cen	9p13.2	604296	GRHPR, GLXR	Glyoxylate reductase/hydroxypyruvate reductase	GRHPR	9380	ENSG00000137106		Hyperoxaluria, primary, type II, 260000 (3), Autosomal recessive	Grhpr (MGI:1923488)
chr9	37438101	37465409	9p13.2	9p13.2	616590	ZBTB5, KIAA0354	Zinc finger- and BTB domain-containing protein 5	ZBTB5	9925	ENSG00000168795			Zbtb5 (MGI:1924601)
chr9	37510891	37576458	9p13.1	9p13.2	609092	FBXO10, FBX10	F-box only protein 10	FBXO10	26267	ENSG00000147912			Fbxo10 (MGI:2686937)
chr9	37588412	37592638	9p13.2	9p13.2	616169	TOMM5, TOM5	Translocase of outer mitochondrial membrane 5, yeast, homolog of	TOMM5	401505	ENSG00000175768			
chr9	37602976	37746903	9p13.2	9p13.2	616919	FRMPD1, FRMD2, KIAA0967	FERM and PDZ domains-containing protein 1	FRMPD1	22844	ENSG00000070601			Frmpd1 (MGI:2446274)
chr9	37779713	37785091	9p13.2	9p13.2	606489	EXOSC3, RRP40, PCH1B	Exosome component 3	EXOSC3	51010	ENSG00000107371		Pontocerebellar hypoplasia, type 1B, 614678 (3), Autosomal recessive	Exosc3 (MGI:1913612)
chr9	37900000	69300000	9p13.1-q21.11		612096	OTSC8	Otosclerosis 8	OTSC8	100151644		between D9S970 and D9S1799	Otosclerosis 8, 612096 (2), Autosomal dominant	
chr9	37915897	38069212	9p12-p11	9p13.1	600314	SHB	SHB adaptor protein (a Src homology 2 protein)	SHB	6461	ENSG00000107338			Shb (MGI:98294)
chr9	38392663	38398664	9p13	9p13.1	100670	ALDH1B1, ALDH5	Aldehyde dehydrogenase 1 family, member B1	ALDH1B1	219	ENSG00000137124			Aldh1b1 (MGI:1919785)
chr9	38406527	38424446	9p13.1	9p13.1	610413	IGFBPL1, IGFBPRP4	Insulin-like growth factor binding protein-like 1	IGFBPL1	347252	ENSG00000137142			Igfbpl1 (MGI:1933198)
chr9	39000000	61500000	9p12-q12		605388	ACP	Cerebral palsy, ataxic, autosomal recessive	CPAT1	60502			Cerebral palsy, ataxic, autosomal recessive, 605388 (2), Autosomal recessive	
chr9	39072766	39288302	9p13.1	9p12	610517	CNTNAP3, KIAA1714	Contactin-associated protein-like 3	CNTNAP3	79937	ENSG00000106714			Cntnap3 (MGI:3588199)
chr9	40000000	43000000	9p11		155900	MROS	Melkersson-Rosenthal syndrome	MROS	8011			?Melkersson-Rosenthal syndrome, 155900 (2), Autosomal dominant	
chr9	43000000	138394717	9q		609320	HCHGQ2	Hematocrit/hemoglobin quantitative trait locus 2		100381205			[Hematocrit/hemoglobin quantitative trait locus 2], 609320 (2)	
chr9	43000000	138394717	9q		607152	SPG19	Spastic paraplegia-19	SPG19	140907			Spastic paraplegia 19, autosomal dominant, 607152 (2), Autosomal dominant	
chr9	45500000	61500000	9q12		126330	DNCM	Cytoplasmic membrane DNA		1784		in 9qh		
chr9	61190035	61196279	9q12	9q12	616584	SPATA31A7, AEP1, FAM75A7, C9orf36	Spermatogenesis-associated protein 31, subfamily A, member 7	SPATA31A7	26165	ENSG00000276040			Spata31 (MGI:1925374)
chr9	61500000	65000000	9q13		600884	CMD1B, CMPD1, FDC	Cardiomyopathy, dilated-1B, autosomal dominant	CMD1B	1218			Cardiomyopathy, dilated 1B, 600884 (2), Autosomal dominant	
chr9	61500000	99800000	9q13-q22		605749	CTRCT26, CAAR	Cataract 26, multiple types	CTPL1	81863			Cataract 26, multiple types, 605749 (2)	
chr9	61500000	87800000	9q13-q21		190100	GSM1, GSP	Geniospasm 1	GSM1	2933			Geniospasm, 190100 (2), Autosomal dominant	
chr9	65000000	69300000	9q21.11		613558	DFNA51, C9DUPq21.11, DUP9q21.11	Deafness, autosomal dominant 51 (chromosome 9q21.11 duplication syndrome)				259kb duplication involving TJP2 and FAM189A2	Deafness, autosomal dominant 51, 613558 (4), Autosomal dominant	
chr9	65000000	99800000	9q21-q22		611631	ETL4, ETOLM	Epilepsy, familial temporal lobe, 4		100144434		between GATA152H04 and D9S253	Epilepsy, familial temporal lobe, 4, 611631 (2), Autosomal dominant	
chr9	65000000	87800000	9q21		613088	PVOP2	Pelvic organ prolapse, susceptibility to, 2		100312955		between rs4077632 and rs10868525	{Pelvic organ prolapse, susceptibility to, 2}, 613088 (2)	
chr9	65737145	65738395	9p11.2	9q21.11	611085	FOXD4L4, FOXD4L2	Forkhead box D4-like 4	FOXD4L4	349334	ENSG00000184659			
chr9	66900724	66932140	9q21.11	9q21.11	616290	ZNF658	Zinc finger protein 658	ZNF658	26149	ENSG00000274349			Gm7145,Zfp735,Zfp616 (MGI:3648947,MGI:1923640,MGI:3650906)
chr9	68241865	68300034	9q13	9q21.11	611080	CBWD3	Cobalamin synthetase W domain-containing protein 3	CBWD3	445571	ENSG00000196873			
chr9	68302866	68305083	9q13	9q21.11	611086	FOXD4L3	Forkhead box D4-like 3	FOXD4L3	286380	ENSG00000187559			
chr9	68356583	68531060	9p12-q12	9q21.11	600981	PGM5	Phosphoglucomutase-5	PGM5	5239	ENSG00000154330			Pgm5 (MGI:1925668)
chr9	68705216	69009175	9q13	9q21.11	602745	PIP5K1B, STM7, MSS4	Phosphatidylinositol-4-phosphate 5-kinase, type I, beta	PIP5K1B	8395	ENSG00000107242			Pip5k1b (MGI:107930)
chr9	68780005	68783878	9q21.1	9q21.11	617249	FAM122A, C9orf42	Family with sequence similarity 122, member A	FAM122A	116224	ENSG00000187866			Fam122a (MGI:1915284)
chr9	69012528	69014122	9q21.11	9q21.11	176893	PRKACG, BDPLT19	Protein kinase, cAMP-dependent, catalytic, gamma	PRKACG	5568	ENSG00000165059	mutation identified in 1 BDPLT19 family	?Bleeding disorder, platelet-type, 19, 616176 (3), Autosomal recessive	
chr9	69035562	69079076	9q13	9q21.11	606829	FXN, FRDA, FARR, X25	Frataxin	FXN	2395	ENSG00000165060		Friedreich ataxia, 229300 (3), Autosomal recessive; Friedreich ataxia with retained reflexes, 229300 (3), Autosomal recessive	Fxn (MGI:1096879)
chr9	69121005	69255207	9q12-q13	9q21.11	607709	TJP2, ZO2, PFIC4	Tight junction protein 2	TJP2	9414	ENSG00000119139		Cholestasis, progressive familial intrahepatic 4, 615878 (3), Autosomal recessive; Hypercholanemia, familial, 607748 (3)	Tjp2 (MGI:1341872)
chr9	69324571	69392472	9q13-q21	9q21.12	607710	X123	X123 gene	FAM189A2	9413	ENSG00000135063			Fam189a2 (MGI:2685813)
chr9	69427531	69673011	9q21.11-q21.12	9q21.12	602414	APBA1, X11, D9S411E, MINT1, LIN10	Amyloid beta A4 precursor protein-binding, family A, member 1	APBA1	320	ENSG00000107282			Apba1 (MGI:1860297)
chr9	70043580	70226971	9q21.11	9q21.12	612879	MAMDC2	MAM domain-containing 2	MAMDC2	256691	ENSG00000165072			Mamdc2 (MGI:1918988)
chr9	70258961	70354872	9q21.11	9q21.12	609386	SMC5L1, SMC5, KIAA0594	Structural maintenance of chromosomes 5-like 1	SMC5	23137	ENSG00000198887			Smc5 (MGI:2385088)
chr9	70384596	70414656	9q13	9q21.12	602902	BTEB1, BTEB	Basic transcription element-binding protein 1	KLF9	687	ENSG00000119138			Klf9 (MGI:1333856)
chr9	70529062	71446949	9q21.12	9q21.12-q21.13	608961	TRPM3, MLSN2, LTRPC3, KIAA1616	Transient receptor potential cation channel, subfamily M, member 3	TRPM3	80036	ENSG00000083067			Trpm3 (MGI:2443101)
chr9	70809974	70810083	9q21.11	9q21.12	610942	MIR204, MIRN204, RDICC	Micro RNA 204	MIR204	406987		mutation identified in 1 RDICC family	?Retinal dystrophy and iris coloboma with or without cataract, 616722 (3), Autosomal dominant	
chr9	71683365	71769531	9q13-q21	9q21.13	605835	TMEM2	Transmembrane protein 2	CEMIP2	23670	ENSG00000135048			Tmem2 (MGI:1890373)
chr9	72114594	72256044	9q21.13	9q21.13	139260	GDA, CYPIN	Guanine deaminase	GDA	9615	ENSG00000119125			Gda (MGI:95678)
chr9	72351424	72365246	9q13-q21	9q21.13	604761	ZFAND5, ZNF216	Zinc finger AN1 domain-containing protein 5	ZFAND5	7763	ENSG00000107372			Zfand5 (MGI:1278334)
chr9	72521800	72836350	9q13-q21	9q21.13	606706	TMC1, DFNB7, DFNB11, DFNA36	Transmembrane channel-like protein 1	TMC1	117531	ENSG00000165091		Deafness, autosomal dominant 36, 606705 (3), Autosomal dominant; Deafness, autosomal recessive 7, 600974 (3), Autosomal recessive	Tmc1 (MGI:2151016)
chr9	72900661	72953316	9q21	9q21.13	100640	ALDH1A1	Aldehyde dehydrogenase-1 family, member A1, soluble	ALDH1A1	216	ENSG00000165092			Aldh1a1 (MGI:1353450)
chr9	73151730	73170392	9q11-q22	9q21.13	151690	ANXA1, LPC1	Annexin A1 (lipocortin I)	ANXA1	301	ENSG00000135046			Anxa1 (MGI:96819)
chr9	74497335	74687200	9q22	9q21.13	601972	RORB, RZRB	RAR-related orphan receptor B	RORB	6096	ENSG00000198963			Rorb (MGI:1343464)
chr9	74722494	74888093	9q22	9q21.13	607009	TRPM6, CHAK2, HOMG1	Transient receptor potential cation channel, subfamily M, member 6	TRPM6	140803	ENSG00000119121		Hypomagnesemia 1, intestinal, 602014 (3), Autosomal recessive	Trpm6 (MGI:2675603)
chr9	74980793	75028455	9q21.13	9q21.13	616552	CARNMT1, C9orf41, UPF0586	Carnosine N-methyltransferase 1	CARNMT1	138199	ENSG00000156017			Carnmt1 (MGI:1914633)
chr9	75088479	75147197	9q21.13	9q21.13	610180	OSTF1, OSF, SH3P2	Osteoclast-stimulating factor 1	OSTF1	26578	ENSG00000134996			Ostf1 (MGI:700012)
chr9	75890643	76362338	9q21.3	9q21.13	600488	PCSK5	Proprotein convertase subtilisin/kexin type 5	PCSK5	5125	ENSG00000099139	?close to LPC1 on 9q		Pcsk5 (MGI:97515)
chr9	76385516	76394527	9q21.1	9q21.13	613010	RFK	Riboflavin kinase	RFK	55312	ENSG00000135002			Rfk (MGI:1914688)
chr9	76441665	76507415	9q13	9q21.13	600391	GCNT1	Glucosaminyl (N-acetyl) transferase 1, core 2 (beta-1,6-N-acetylglucosaminyltransferase)	GCNT1	2650	ENSG00000187210			Gcnt1 (MGI:95676)
chr9	76611375	76906219	9p13	9q21.2	610691	PRUNE2, BMCC1, KIAA0367	PRUNE, Drosophila, homolog of, 2	PRUNE2	158471	ENSG00000106772			Prune2 (MGI:1925004)
chr9	76764435	76787568	9q21-q22	9q21.2	604845	PCA3, DD3	Prostate cancer antigen 3	PCA3	50652				
chr9	77177352	77421536	9q21	9q21.2	605978	VPS13A, CHAC	Vacuolar protein sorting 13A (chorein)	VPS13A	23230	ENSG00000197969		Choreoacanthocytosis, 200150 (3), Autosomal recessive	Vps13a (MGI:2444304)
chr9	77423078	77648315	9q21	9q21.2	604397	GNA14	Guanine nucleotide-binding protein, alpha-14	GNA14	9630	ENSG00000156049			Gna14 (MGI:95769)
chr9	77716273	78031448	9q21	9q21.2	600998	GNAQ, SWS, CMC1	Guanine nucleotide-binding protein (G protein), q	GNAQ	2776	ENSG00000156052	pseudogene on 2q	Capillary malformations, congenital, 1, somatic, mosaic, 163000 (3); Sturge-Weber syndrome, somatic, mosaic, 185300 (3)	Gnaq (MGI:95776)
chr9	78236061	78278436	9q21.2	9q21.2	617110	CEP78, CRDHL	Centrosomal protein, 78kD	CEP78	84131	ENSG00000148019		Cone-rod dystrophy and hearing loss, 617236 (3), Autosomal recessive	Cep78 (MGI:1924386)
chr9	78297074	78330092	9q21.31	9q21.2	610936	PSAT1, PSAT, EPIP, PSATD, NLS2	Phosphoserine aminotransferase 1	PSAT1	29968	ENSG00000135069	mutation identified in 1 PSATD family	Neu-Laxova syndrome 2, 616038 (3), Autosomal recessive; ?Phosphoserine aminotransferase deficiency, 610992 (3), Autosomal recessive	Psat1 (MGI:2183441)
chr9	78500000	99800000	9q21.3-q22		267700	FHL1, HPLH1, HLH1	Hemophagocytic lymphohistiocytosis, familial, 1	HPLH1	27259			Hemophagocytic lymphohistiocytosis, familial, 1, 267700 (2), Autosomal recessive	
chr9	81583682	81689534	9q21.3	9q21.32	600189	TLE1, ESG1	Transducin-like enhancer of split 1 (homolog of Drosophila E(spl))	TLE1	7088	ENSG00000196781	conflicting assignment to chr.19		Tle1 (MGI:104636)
chr9	82979584	83063171	9q21.32	9q21.32	611344	RASEF	RAS and EF-hand domains-containing protein	RASEF	158158	ENSG00000165105			Rasef (MGI:2448565)
chr9	83242989	83585796	9q21-q22	9q21.32	607619	FRMD3, EPB41LO	FERM domain-containing 3	FRMD3	257019	ENSG00000172159			Frmd3 (MGI:2442466)
chr9	83622323	83644129	9q21.32	9q21.32	611343	C9orf103	Chromosome 9 open reading frame 103	IDNK	414328	ENSG00000148057			Idnk (MGI:1922981)
chr9	83659962	83708252	9q21.2-q21.3	9q21.32	605046	UBQLN1, DA41	Ubiquilin 1 (Da41, rat, homolog of)	UBQLN1	29979	ENSG00000135018			Ubqln1 (MGI:1860276)
chr9	83739420	83817836	9q21.32	9q21.32	611356	GKAP1, GKAP42	G kinase-anchoring protein 1	GKAP1	80318	ENSG00000165113			Gkap1 (MGI:1891694)
chr9	83832794	83921543	9q21.32	9q21.32	611253	KIF27	Kinesin family member 27	KIF27	55582	ENSG00000165115			Kif27 (MGI:1922300)
chr9	83938310	83956985	9q21.32	9q21.32	611342	C9orf64	Chromosome 9 open reading frame 64	C9orf64	84267	ENSG00000165118			2210016F16Rik (MGI:1917403)
chr9	83968082	83980781	9q21.32-q21.33	9q21.32	600712	HNRNPK, HNRPK, AUKS	Heterogeneous nuclear ribonucleoprotein K	HNRNPK	3190	ENSG00000165119		Au-Kline syndrome, 616580 (3), Autosomal dominant	Hnrnpk (MGI:99894)
chr9	83969747	83969856	9q21.32	9q21.32	615239	MIR7-1	Micro RNA 7-1	MIR7-1	407043				
chr9	83980358	84004073	9q21.32	9q21.32	610404	RMI2, BLAP75, C9orf76	RecQ-mediated genome instability 1, S. cerevisiae, homolog of	RMI1	80010	ENSG00000178966			Rmi1 (MGI:1921636)
chr9	84273122	84368633	9q22.2	9q21.32-q21.33	608269	SLC28A3, CNT3	Solute carrier family (sodium-coupled nucleoside transporter), member 3	SLC28A3	64078	ENSG00000197506			Slc28a3 (MGI:2137361)
chr9	84668457	85027069	9q21.33	9q21.33	600456	NTRK2, TRKB, OBHD, EIEE58	Neurotrophic tyrosine kinase, receptor, type 2	NTRK2	4915	ENSG00000148053		Epileptic encephalopathy, early infantile, 58, 617830 (3), Autosomal dominant; Obesity, hyperphagia, and developmental delay, 613886 (3), Autosomal dominant	Ntrk2 (MGI:97384)
chr9	85546538	85742028	9q21.33	9q21.33	606830	AGTPBP1, NNA1, KIAA1035, CCP1	ATP/GTP-binding protein 1	AGTPBP1	23287	ENSG00000135049			Agtpbp1 (MGI:2159437)
chr9	86026140	86100200	9q21.33	9q21.33	606804	GOLM1, GOLPH2, GP73, C9orf155	Golgi membrane protein 1	GOLM1	51280	ENSG00000135052			Golm1 (MGI:1917329)
chr9	86264545	86282574	9q21.2-q22.1	9q21.33	611006	ISCA1, HBLD2, HISCA, MMDS5	Iron-sulfur cluster assembly 1, S. cerevisiae, homolog of	ISCA1	81689	ENSG00000135070		Multiple mitochondrial dysfunctions syndrome 5, 617613 (3), Autosomal recessive	Isca1 (MGI:1916296)
chr9	86287732	86354496	9q21.33	9q21.33	613467	ZCCHC6, TUT7, KIAA1711	Zinc finger CCHC domain-containing protein 6	ZCCHC6	79670	ENSG00000083223			Zcchc6 (MGI:2387179)
chr9	86944361	86947188	9q21.3-q22.1	9q21.33	139185	GAS1	Growth arrest-specific gene-1	GAS1	2619	ENSG00000180447			Gas1 (MGI:95655)
chr9	87497227	87708633	9q34.1	9q21.33	600831	DAPK1	Death-associated protein kinase-1	DAPK1	1612	ENSG00000196730			Dapk1 (MGI:1916885)
chr9	87725436	87731468	9q21-q22	9q21.33	116880	CTSL	Cathepsin L	CTSL	1514	ENSG00000135047	\'like\' sequence on 10q23-q24		
chr9	87800000	99800000	9q22		608695	JOAG2	Glaucoma, primary open angle, juvenile-onset, 2	GLC1J	574078		between D9S1803 and D9S196	Glaucoma, primary open angle, juvenile-onset, 2, 608695 (2)	
chr9	87800000	99800000	9q22		610114	STQTL8	Stature quantitative trait locus 8		100037266		between GATA81C04M and ATA18A07M	{Stature QTL 8}, 610114 (2)	
chr9	87966440	87974779	9q22.1	9q22.1	610076	CDK20, CCRK, CDCH, P42	Cyclin-dependent kinase 20	CDK20	23552	ENSG00000156345			Cdk20 (MGI:2145349)
chr9	88388381	88478707	9q22.1-q22.3	9q22.1	609936	SPIN, SPIN1	Spindlin	SPIN1	10927	ENSG00000106723			Spin1 (MGI:109242)
chr9	88535087	88584509	9q22.1	9q22.1	615299	NXNL2, RDCVF2	Nucleoredoxin-like protein 2	NXNL2	158046	ENSG00000130045			Nxnl2 (MGI:1922374)
chr9	88991408	89005154	9q22.1-q22.2	9q22.1	601965	S1PR3, EDG3	Sphingosine-1-phosphate receptor 3	S1PR3	1903	ENSG00000213694			S1pr3 (MGI:1339365)
chr9	89005770	89182401	9q22.1	9q22.1	605263	SHC3, NSHC, RAI, SHCC	SHC transforming protein 3	SHC3	53358	ENSG00000148082			Shc3 (MGI:106179)
chr9	89311194	89316702	9q22.2	9q22.2	116901	CKS2	CDC2-associated protein CKS2	CKS2	1164	ENSG00000123975			Cks2 (MGI:1913447)
chr9	89318472	89367116	9q22.2	9q22.2	607693	SECISBP2, SBP2	Selenocysteine insertion sequence-binding protein 2	SECISBP2	79048	ENSG00000187742		Thyroid hormone metabolism, abnormal, 609698 (3)	Secisbp2 (MGI:1922670)
chr9	89360790	89498064	9q22.2	9q22.2	601866	SEMA4D, SEMAJ, CD100, COLL4	Semaphorin 4D	SEMA4D	10507	ENSG00000187764			Sema4d (MGI:109244)
chr9	89605008	89606554	9q22.1-q22.2	9q22.2	604949	GADD45G, GRP17	Growth arrest- and DNA damage-inducible gene 45, gamma	GADD45G	10912	ENSG00000130222			Gadd45g (MGI:1346325)
chr9	90609831	90643104	9q22.2	9q22.2	607863	DIRAS2	DIRAS family, GTP-binding Ras-like protein 2	DIRAS2	54769	ENSG00000165023			Diras2 (MGI:1915453)
chr9	90801679	90898559	9q22	9q22.2	600085	SYK	Spleen tyrosine kinase	SYK	6850	ENSG00000165025			Syk (MGI:99515)
chr9	91213814	91361968	9q22.31	9q22.31	600529	AUH	AU-specific RNA-binding protein (3-methylglutaconyl-CoA hydratase)	AUH	549	ENSG00000148090		3-methylglutaconic aciduria, type I, 250950 (3), Autosomal recessive	Auh (MGI:1338011)
chr9	91409044	91425062	9q22.1-q22.3	9q22.31	605327	NFIL3, NFIL3A, E4BP4	Nuclear factor, interleukin 3-regulated	NFIL3	4783	ENSG00000165030			Nfil3 (MGI:109495)
chr9	91722595	91950205	9q22	9q22.31	602337	ROR2, BDB1, BDB, NTRKR2	Receptor tyrosine kinase-like orphan receptor 2	ROR2	4920	ENSG00000169071		Brachydactyly, type B1, 113000 (3), Autosomal dominant; Robinow syndrome, autosomal recessive, 268310 (3), Autosomal recessive	Ror2 (MGI:1347521)
chr9	92031133	92115473	9q22.1-q22.3	9q22.31	605712	SPTLC1, LBC1, SPT1, HSN1, HSAN	Serine palmitoyltransferase, long-chain base subunit 1	SPTLC1	10558	ENSG00000090054		Neuropathy, hereditary sensory and autonomic, type IA, 162400 (3), Autosomal dominant	Sptlc1 (MGI:1099431)
chr9	92210206	92293755	9q21	9q22.31	600709	IARS, GRIDHH	Isoleucine-tRNA synthetase	IARS	3376	ENSG00000196305		Growth retardation, intellectual developmental disorder, hypotonia, and hepatopathy, 617093 (3), Autosomal recessive	Iars (MGI:2145219)
chr9	92297357	92325993	9q22.32	9q22.31	611534	NOL8, NOP132	Nucleolar protein 8	NOL8	55035	ENSG00000198000			Nol8 (MGI:1918180)
chr9	92325456	92615163	9q22.31	9q22.31	611505	CENPP	Centromeric protein P	CENPP	401541	ENSG00000188312			Cenpp (MGI:1913586)
chr9	92383270	92404698	9q22.3	9q22.31	602383	OGN, OIF	Osteoglycin	OGN	4969	ENSG00000106809			Ogn (MGI:109278)
chr9	92456204	92482561	9q21.3-q22	9q22.31	608135	ASPN, PLAP1, OS3	Asporin	ASPN	54829	ENSG00000106819		{Lumbar disc degeneration}, 603932 (3); {Osteoarthritis susceptibility 3}, 607850 (3), Autosomal dominant	Aspn (MGI:1913945)
chr9	92493546	92536840	9q22.3	9q22.31	603479	ECM2	Extracellular matrix protein-2	ECM2	1842	ENSG00000106823			Ecm2 (MGI:3039578)
chr9	92711362	92764840	9q22.3	9q22.31	609797	BICD2, KIAA0699, SMALED2	Bicaudal D, Drosophila, homolog of, 2	BICD2	23299	ENSG00000185963		Spinal muscular atrophy, lower extremity-predominant, 2, AD, 615290 (3), Autosomal dominant	Bicd2 (MGI:1924145)
chr9	92947318	93036235	9q22.31	9q22.31	617554	FGD3, ZFYVE5	FYVE, RhoGEF, and Ph domain-containing protein 3	FGD3	89846	ENSG00000127084			Fgd3 (MGI:1353657)
chr9	93058687	93085137	9q22.31	9q22.31	616429	SUSD3	SUSHI domain-containing protein 3	SUSD3	203328	ENSG00000157303			Susd3 (MGI:1913579)
chr9	93096122	93113294	9q22.32	9q22.31	617726	CARD19, BINCARD, C9orf89	Caspase recruitment domain-containing protein 19	CARD19	84270	ENSG00000165233			Card19 (MGI:1915730)
chr9	93121488	93134303	9q22	9q22.31	602062	NINJ1	Ninjurin	NINJ1	4814	ENSG00000131669			Ninj1 (MGI:1196617)
chr9	93184155	93327580	9q22.3	9q22.31	606249	WNK2, PRKWNK2	WNK lysine deficient protein kinase 2	WNK2	65268	ENSG00000165238			Wnk2 (MGI:1922857)
chr9	93451695	93566114	9q22.31	9q22.31	612265	FAM120A, C9orf10, KIAA0183	Family with sequence similarity 120, member A	FAM120A	23196	ENSG00000048828			Fam120a (MGI:2446163)
chr9	93576626	93679586	9q22	9q22.31	604351	PHF2	PHD finger protein-2	PHF2	5253	ENSG00000197724			Phf2 (MGI:1338034)
chr9	93951626	93955325	9q12	9q22.32	603260	BARX1	BarH-like homeo box gene 1	BARX1	56033	ENSG00000131668			Barx1 (MGI:103124)
chr9	94175956	94176035	9q22.32	9q22.32	605386	MIRLET7A1, LET7A1, MIRNLET7A1	Micro RNA Let7a1	MIRLET7A1	406881				
chr9	94176346	94176432	9q22.32	9q22.32	612146	MIRLET7F1, LET7F1, MIRNLET7F1	Micro RNA Let7f1	MIRLET7F1	406888				
chr9	94178833	94178919	9q22.32	9q22.32	612145	MIRLET7D, LET7D, MIRNLET7D	Micro RNA Let7d	MIRLET7D	406886				
chr9	94259265	94303966	9q22.3	9q22.32	603404	ZNF169	Zinc finger protein-169	ZNF169	169841	ENSG00000175787			Zfp169 (MGI:1915161)
chr9	94558713	94593831	Chr.9	9q22.32	603027	FBP2	Fructose-1,6-bisphosphatase 2	FBP2	8789	ENSG00000130957			Fbp2 (MGI:95491)
chr9	94603132	94640257	9q22.2-q22.3	9q22.32	611570	FBP1	Fructose-bisphosphatase 1	FBP1	2203	ENSG00000165140		Fructose-1,6-bisphosphatase deficiency, 229700 (3), Autosomal recessive	Fbp1 (MGI:95492)
chr9	95085207	95085303	9q22.32	9q22.32	610723	MIR23B, MIRN23B	Micro RNA 23B	MIR23B	407011				
chr9	95085444	95085540	9q22.32	9q22.32	610636	MIR27B, MIRN27B	Micro RNA 27B	MIR27B	407019				
chr9	95086020	95086087	9q22.32	9q22.32	609705	MIR189, MIRN24-1	Micro RNA 24-1	MIR24-1	407012				
chr9	95099053	95317729	9q22.3	9q22.32	613899	FANCC, FACC	Fanconi anemia, complementation group C	FANCC	2176	ENSG00000158169		Fanconi anemia, complementation group C, 227645 (3), Autosomal recessive	Fancc (MGI:95480)
chr9	95442979	95517056	9q22.3	9q22.32	601309	PTCH1, NBCCS, BCNS, HPE7	Patched, Drosophila, homolog of	PTCH1	5727	ENSG00000185920		Basal cell carcinoma, somatic, 605462 (3); Basal cell nevus syndrome, 109400 (3), Autosomal dominant; Holoprosencephaly 7, 610828 (3), Autosomal dominant	Ptch1 (MGI:105373)
chr9	95875617	96041091	9q22.32	9q22.32	615667	ERCC6L2, RAD26L, BMFS2	ERCC6-like 2	ERCC6L2	375748	ENSG00000182150		Bone marrow failure syndrome 2, 615715 (3), Autosomal recessive	Ercc6l2 (MGI:1923501)
chr9	96235305	96313986	9q22	9q22.32	605573	HSD17B3, EDH17B3	Hydroxysteroid (17-beta) dehydrogenase 3	HSD17B3	3293	ENSG00000130948		Pseudohermaphroditism, male, with gynecomastia, 264300 (3), Autosomal recessive	Hsd17b3 (MGI:107177)
chr9	96313436	96383709	9q22.3	9q22.32	609182	SLC35D2, HFRC1, SQV7L	Solute carrier family 35, member D2	SLC35D2	11046	ENSG00000130958			Slc35d2 (MGI:1917734)
chr9	96385940	96418638	9q22.32	9q22.32	610160	ZNF367, AFF29	Zinc finger protein 367	ZNF367	195828	ENSG00000165244			Zfp367 (MGI:2442266)
chr9	96492742	96619829	9q22.32-q22.33	9q22.32-q22.33	603505	CDC14B	Cell division cycle 14, S. cerevisiae, homolog B	CDC14B	8555	ENSG00000081377			Cdc14b (MGI:2441808)
chr9	97029676	97039642	9q22.2	9q22.33	603308	CTSL2, CTSV	Cathepsin L2	CTSV	1515	ENSG00000136943			Ctsl (MGI:88564)
chr9	97412019	97496124	9q22.33	9q22.33	611258	TDRD7, KIAA1529, TRAP, CATC4, CTRCT36	Tudor domain-containing protein 7	TDRD7	23424	ENSG00000196116		Cataract 36, 613887 (3), Autosomal recessive	Tdrd7 (MGI:2140279)
chr9	97501179	97601742	9q22.3	9q22.33	190930	TMOD	Tropomodulin	TMOD1	7111	ENSG00000136842			Tmod1 (MGI:98775)
chr9	97633422	97673747	9q22.3-q31	9q22.33	600469	NCBP1	Nuclear cap binding protein 1, 80kD	NCBP1	4686	ENSG00000136937	in 500kb of XPA		Ncbp1 (MGI:1891840)
chr9	97654397	97697408	9q22.3	9q22.33	611153	XPA, XPAC	XPA complementing gene	XPA	7507	ENSG00000136936		Xeroderma pigmentosum, group A, 278700 (3), Autosomal recessive	Xpa (MGI:99135)
chr9	97853254	97856714	9q22	9q22.33	602617	FOXE1, FKHL15, TITF2, TTF2, NMTC4	Forkhead box E1 (thyroid transcription factor-2)	FOXE1	2304	ENSG00000178919		Bamforth-Lazarus syndrome, 241850 (3), Autosomal recessive; {Thyroid cancer, nonmedullary, 4}, 616534 (3), Autosomal dominant	Foxe1 (MGI:1353500)
chr9	97926790	97944914	9q22	9q22.33	610715	HEMGN, EDAG	Hemogen	HEMGN	55363	ENSG00000136929			Hemgn (MGI:2136910)
chr9	98056676	98083082	9q22.33	9q22.33	605202	NANS, SAS, SEMDCG	N-acetylneuraminic acid synthase (sialic acid synthase)	NANS	54187	ENSG00000095380		Spondyloepimetaphyseal dysplasia, Camera-Genevieve type, 610442 (3), Autosomal recessive	Nans (MGI:2149820)
chr9	98072013	98119419	9q22-q31	9q22.33	606556	TRIM14, KIAA0129	Tripartite motif-containing protein 14	TRIM14	9830	ENSG00000106785			Trim14 (MGI:1921985)
chr9	98120974	98192673	9q22.3	9q22.33	602159	CORO2A, WDR2, IR10	Coronin 2A	CORO2A	7464	ENSG00000106789			Coro2a (MGI:1345966)
chr9	98198997	98255720	9q22.3	9q22.33	609871	TBC1D2, PARIS1	TBC1 domain family, member 2	TBC1D2	55357	ENSG00000095383			Tbc1d2 (MGI:2652885)
chr9	98288081	98709196	9q22.1	9q22.33	607340	GABBR2, GPR51, EIEE59, NDPLHS	Gamma-aminobutyric acid B receptor 2	GABBR2	9568	ENSG00000136928		Epileptic encephalopathy, early infantile, 59, 617904 (3), Autosomal dominant; Neurodevelopmental disorder with poor language and loss of hand skills, 617903 (3), Autosomal dominant; {Nicotine dependence, protection against}, 188890 (3); {Nicotine dependence, susceptibility to}, 188890 (3)	Gabbr2 (MGI:2386030)
chr9	98732008	98796541	9q22.33	9q22.33	615370	ANKS6, PKDR1, NPHP16	Ankyrin repeat and sterile alpha motif domains-containing protein 6	ANKS6	203286	ENSG00000165138		Nephronophthisis 16, 615382 (3), Autosomal recessive	Anks6 (MGI:1922941)
chr9	98807698	98850080	9q22	9q22.33	610290	GALNT12, CRCS1	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12	GALNT12	79695	ENSG00000119514		{Colorectal cancer, susceptibility to, 1}, 608812 (3)	Galnt12 (MGI:2444664)
chr9	98943391	99070791	9q21-q22	9q22.33	120325	COL15A1	Collagen XV, alpha-1 polypeptide	COL15A1	1306	ENSG00000204291			Col15a1 (MGI:88449)
chr9	99104037	99154191	9q22	9q22.33	190181	TGFBR1, ALK5, AAT5, LDS1, MSSE	Transforming growth factor, beta receptor I (activin A receptor type II-like kinase, 53kD)	TGFBR1	7046	ENSG00000106799		Loeys-Dietz syndrome 1, 609192 (3), Autosomal dominant; {Multiple self-healing squamous epithelioma, susceptibility to}, 132800 (3), Autosomal dominant	Tgfbr1 (MGI:98728)
chr9	99216424	99221963	9q22	9q22.33	607905	ALG2, CDGII, CMSTA3, CMS14	Alg2, S. cerevisiae, homolog of	ALG2	85365	ENSG00000119523	mutation identified in 1 CDGII patient	?Congenital disorder of glycosylation, type Ii, 607906 (3), Autosomal recessive; Myasthenic syndrome, congenital, 14, with tubular aggregates, 616228 (3), Autosomal recessive	Alg2 (MGI:1914731)
chr9	99222287	99230618	9q22.33	9q22.33	609214	SEC61B	Sec61 complex, beta subunit	SEC61B	10952	ENSG00000106803			Sec61b (MGI:1913462)
chr9	99800000	105400000	9q31.1		614954	CHDT3	Congenital heart defects, multiple types, 3		101154642		max lod at D9S1690	Congenital heart defects, multiple types, 3, 614954 (2), Autosomal dominant	
chr9	99800000	114900000	9q31-q32		608026	HNP1	Hypertensive nephropathy		574045			Hypertensive nephropathy, 608026 (2)	
chr9	99800000	112100000	9q31		600156	HSCR5	Hirschsprung disease, susceptibility to, 5		404720			{Hirschsprung disease, susceptibility to, 5}, 600156 (2), Autosomal dominant	
chr9	99800000	112100000	9q31		607853	PAND2	Panic disorder 2		619493		max lod at D9S271	Panic disorder 2, 607853 (2)	
chr9	99800000	138394717	9q31-q34		183840	SPDA2	Spondyloarthropathy, susceptibility to, 2		791255		max lod at D9S1776	{Spondyloarthropathy, susceptibility to, 2}, 183840 (2), Autosomal dominant	
chr9	99821854	99866892	9q22	9q31.1	600542	CSMF	Chondrosarcoma, extraskeletal myxoid, fused to EWS in	NR4A3	8013	ENSG00000119508	t(9;17)(q22;q11); t(9;22)(q22;q11-q12)	Chondrosarcoma, extraskeletal myxoid, 612237 (3)	Nr4a3 (MGI:1352457)
chr9	99906632	99974540	9q31	9q31.1	604204	STX17	Syntaxin 17	STX17	55014	ENSG00000136874			Stx17 (MGI:1914977)
chr9	99979178	100099051	9q31.1	9q31.1	609170	TXNDC4, KIAA0573	Thioredoxin domain-containing protein 4	ERP44	23071	ENSG00000023318			Erp44 (MGI:1923549)
chr9	100099184	100302174	9q31	9q31.1	243305	INVS, INV, NPHP2, NPH2	Inversin	INVS	27130	ENSG00000119509		Nephronophthisis 2, infantile, 602088 (3), Autosomal recessive	Invs (MGI:1335082)
chr9	100302074	100352976	9q31.1	9q31.1	616717	TEX10	Testis-expressed gene 10	TEX10	54881	ENSG00000136891			Tex10 (MGI:1344413)
chr9	100473237	100577635	9q31	9q31.1	603421	TMEFF1, C9orf2	Transmembrane protein with EGF-like and 2 follistatin-like domains 1	TMEFF1	8577	ENSG00000241697			Tmeff1 (MGI:1926810)
chr9	100578078	100588388	9q31	9q31.1	617714	CAVIN4, MURC	Caveolae-associated protein 4	CAVIN4	347273	ENSG00000170681			Cavin4 (MGI:1915266)
chr9	101360416	101385004	9q22.3	9q31.1	602938	BAAT	Bile acid coenzyme A:amino acid N-acyltransferase (glycine N-choloyltransferase)	BAAT	570	ENSG00000136881		Hypercholanemia, familial, 607748 (3)	Baat (MGI:106642)
chr9	101389966	101398636	9q31.1	9q31.1	611854	MRPL50	Mitochondrial ribosomal protein L50	MRPL50	54534	ENSG00000136897	pseudogenes on 2, 5, and 10		Mrpl50 (MGI:107329)
chr9	101398829	101410659	9q22-q31	9q31.1	603132	ZNF189	Zinc finger protein-189	ZNF189	7743	ENSG00000136870			Zfp189 (MGI:2444707)
chr9	101420559	101435779	9q22.3	9q31.1	612724	ALDOB	Aldolase B, fructose-bisphosphatase	ALDOB	229	ENSG00000136872		Fructose intolerance, hereditary, 229600 (3), Autosomal recessive	Aldob (MGI:87995)
chr9	101533848	101563343	9q31.1	9q31.1	607699	RNF20, BRE1A	Ring finger protein 20	RNF20	56254	ENSG00000155827			Rnf20 (MGI:1925927)
chr9	101569351	101738579	9q31.1	9q31.1	606650	GRIN3A, NR3A	Glutamate receptor, ionotropic, N-methyl-D-aspartate 3A	GRIN3A	116443	ENSG00000198785			Grin3a (MGI:1933206)
chr9	101591614	101595000	9q31.1	9q31.1	613821	PPP3R2, PPP3RL, CBLP	Protein phosphatase 3, regulatory subunit B, beta	PPP3R2	5535	ENSG00000188386			Ppp3r2 (MGI:107171)
chr9	102995310	103018487	9q31.1	9q31.1	604035	CYLC2	Cylicin 2	CYLC2	1539	ENSG00000155833			
chr9	104093759	104141418	Chr.9	9q31.1	605576	CAPE	Chromosome-associated protein E	SMC2	10592	ENSG00000136824			Smc2 (MGI:106067)
chr9	104747567	104760123	9q31.1	9q31.1	608871	NIPSNAP3A, TASSC	NIPSNAP, C. elegans, homolog of, 3A	NIPSNAP3A	25934	ENSG00000136783			Nipsnap3b (MGI:1913786)
chr9	104781001	104928245	9q22-q31	9q31.1	600046	ABCA1, ABC1, HDLDT1, TGD	ATP-binding cassette 1	ABCA1	19	ENSG00000165029		{Coronary artery disease in familial hypercholesterolemia, protection against}, 143890 (3), Autosomal dominant; HDL deficiency, type 2, 604091 (3); Tangier disease, 205400 (3), Autosomal recessive	Abca1 (MGI:99607)
chr9	105244604	105439774	9q31.2	9q31.1-q31.2	606105	SLC44A1, CTL1, CDW92	Solute carrier family 44, member 1	SLC44A1	23446	ENSG00000070214			Slc44a1 (MGI:2140592)
chr9	105400000	134500000	9q31.2-q34.2		612238	IS4	Scoliosis, idiopathic, susceptibility to, 4		100190785		max lod at D9S2157	{Scoliosis, idiopathic, susceptibility to, 4}, 612238 (2)	
chr9	105400000	108500000	9q31.2		612883	MENAQ3	Menarche, age at, QTL3		100302563		associated with rs2090409	{Menarche, age at, QTL3}, 612883 (2)	
chr9	105442182	105552432	9q31	9q31.2	609829	FSD1NL, FSD1L, MIR1, CCDC10	FSD1 N-terminus-like protein	FSD1L	83856	ENSG00000106701			Fsd1l (MGI:2442443)
chr9	105558116	105655949	9q31	9q31.2	607440	FKTN, FCMD, CMD1X, LGMD2M, MDDGA4, MDDGB4, MDDGC4	Fukutin	FKTN	2218	ENSG00000106692		Cardiomyopathy, dilated, 1X, 611615 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 4, 253800 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital without mental retardation), type B, 4, 613152 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 4, 611588 (3), Autosomal recessive	Fktn (MGI:2179507)
chr9	105662456	105663111	9q31	9q31.2	186855	TAL2	T-cell acute lymphocytic leukemia-2	TAL2	6887	ENSG00000186051	33kb from breakpoint in t(7;9)	Leukemia, T-cell acute lymphocytic, somatic, 613065 (3)	Tal2 (MGI:99540)
chr9	105694524	105776610	9q31.2	9q31.2	611236	TMEM38B, TRICB, OI14	Transmembrane protein 38B	TMEM38B	55151	ENSG00000095209		Osteogenesis imperfecta, type XIV, 615066 (3)	Tmem38b (MGI:1098718)
chr9	106860153	107013633	9q31.2	9q31.2	617371	ZNF462, KIAA1803	Zinc finger protein 462	ZNF462	58499	ENSG00000148143			Zfp462 (MGI:107690)
chr9	107283235	107332193	9q31.2	9q31.2	600062	RAD23B	RAD23 (Saccharomyces cerevisiae) homolog of, B	RAD23B	5887	ENSG00000119318	previously 3p25.1		Rad23b (MGI:105128)
chr9	107484851	107489719	9q31	9q31.2	602253	KLF4, EZF, GKLF	Kruppel-like factor 4	KLF4	9314	ENSG00000136826			Klf4 (MGI:1342287)
chr9	108854587	108855994	9q31	9q31.3	604304	ACTL7B	Actin-like 7B	ACTL7B	10880	ENSG00000148156			Actl7b (MGI:1343053)
chr9	108862227	108863754	9q31	9q31.3	604303	ACTL7A	Actin-like 7A	ACTL7A	10881	ENSG00000187003			Actl7a (MGI:1343051)
chr9	108867516	108934331	9q31	9q31.3	603722	IKBKAP, IKAP	Inhibitor of kappa light polypeptide gene enhancer in B cells, kinase complex-associated protein	ELP1	8518	ENSG00000070061		Dysautonomia, familial, 223900 (3), Autosomal recessive	Ikbkap (MGI:1914544)
chr9	108942568	109013593	9q31.2	9q31.3	604785	CTNNAL1	Catenin, alpha-like, 1	CTNNAL1	8727	ENSG00000119326			Ctnnal1 (MGI:1859649)
chr9	109046228	109046297	9q31.3	9q31.3	609355	MIR32, MIRN32	Micro RNA 32	MIR32	407036				
chr9	109130292	109167290	9q31.3	9q31.3	604574	FRRS1L, C9orf4, CG6, EIEE37	Ferric-chelate reductase 1-like	FRRS1L	23732	ENSG00000260230		Epileptic encephalopathy, early infantile, 37, 616981 (3), Autosomal recessive	Frrs1l (MGI:2442704)
chr9	109171973	109320963	9q31-q32	9q31.3	610340	EPB41L4B, EHM2	Erythrocyte membrane protein band 4.1-like 4B	EPB41L4B	54566	ENSG00000095203			Epb41l4b (MGI:1859149)
chr9	109375693	109538394	9q31.3	9q31.3	176877	PTPN3, PTPH1	Protein-tyrosine phosphatase, nonreceptor-type, 3	PTPN3	5774	ENSG00000070159			Ptpn3 (MGI:105307)
chr9	110048597	110172511	9q31-q33	9q31.3	604582	AKAP2, AKAPKL, KIAA0920, PALM2	A-kinase anchor protein 2	AKAP2	11217	ENSG00000241978	multiple splice variants		Akap2 (MGI:1306795)
chr9	110243811	110256639	9q31	9q31.3	187700	TXN	Thioredoxin	TXN	7295	ENSG00000136810	incorrectly assigned to 3		Txn1 (MGI:98874)
chr9	110300899	110337886	9q32	9q31.3	617789	TXNDC8, SPTRX3	Thioredoxin domain-containing protein 8	TXNDC8	255220	ENSG00000204193			Txndc8 (MGI:1914652)
chr9	110365247	110579879	9q32	9q31.3	611691	SVEP1, POLYDOM, SELOB	Sushi, von willebrand factor type A, EGF, and pentraxin domain-containing 1	SVEP1	79987	ENSG00000165124			Svep1 (MGI:1928849)
chr9	110668188	110806632	9q31.3-q32	9q31.3	601296	MUSK, CMS9, FADS	Receptor tyrosine kinase MuSK	MUSK	4593	ENSG00000030304		Fetal akinesia deformation sequence, 208150 (3), Autosomal recessive; Myasthenic syndrome, congenital, 9, associated with acetylcholine receptor deficiency, 616325 (3), Autosomal recessive	Musk (MGI:103581)
chr9	110873251	111039258	9q31.3	9q31.3	602282	LPAR1, EDG2, LPA1, VZG1	Lysophosphatidic acid receptor 1	LPAR1	1902	ENSG00000198121			Lpar1 (MGI:108429)
chr9	111360692	111484744	9q31.3	9q31.3	616694	KIAA0368, ECM29	KIAA0368 gene	ECPAS	23392	ENSG00000136813			AI314180 (MGI:2140220)
chr9	111549721	111599854	9q31.3	9q31.3	601274	PTGR1, LTB4DH	Prostaglandin reductase 1	PTGR1	22949	ENSG00000106853			Ptgr1 (MGI:1914353)
chr9	111661570	111670245	9q31.3	9q31.3	604389	GNG10	Guanine nucleotide-binding protein, gamma 10	GNG10	2790	ENSG00000242616			Gng10 (MGI:1336169)
chr9	111896765	111935373	9q31	9q31.3	602874	UGCG, GCS	UDP-glucose ceramide glucosyltransferase	UGCG	7357	ENSG00000148154			Ugcg (MGI:1332243)
chr9	112100000	127500000	9q32-q33		611488	ARMD10	Macular degeneration, age-related, 10		107880065			Macular degeneration, age-related, 10, 611488 (2)	
chr9	112100000	127500000	9q32-q33		608762	EIG3	Epilepsy, idiopathic generalized, susceptibility to 3		432400			{Epilepsy, idiopathic generalized, susceptibility to, 3}, 608762 (2), Autosomal recessive	
chr9	112100000	114900000	9q32		612259	IBD16	Inflammatory bowel disease 16, susceptibility to		100190930			{Inflammatory bowel disease 16}, 612259 (2)	
chr9	112217714	112333668	Chr.9	9q32	607527	ROD1	Regulator of differentiation 1	PTBP3	9991	ENSG00000119314			Ptbp3 (MGI:1923334)
chr9	112486967	112665310	3q32	9q32	617390	KIAA1958	KIAA1958 gene	KIAA1958	158405	ENSG00000165185			
chr9	112683947	112718148	9q32	9q32	613273	INIP, C9orf80, SOSSC	INST3- and NABP-interacting protein	INIP	58493	ENSG00000148153			Inip (MGI:1913459)
chr9	112878919	112895537	9q31-q34	9q32	608956	SLC46A2, TSCOT	Solute carrier family 46, member 2	SLC46A2	57864	ENSG00000119457			Slc46a2 (MGI:1353616)
chr9	113041814	113056790	9q32	9q32	602951	ZFP37	Zinc finger protein-37, mouse, homolog of	ZFP37	7539	ENSG00000136866	?candidate for Nager syndrome		Zfp37 (MGI:99181)
chr9	113150957	113164141	9q31-q32	9q32	603088	SLC13A2, COPT2, CTR2	Solute carrier family 31 (copper transporter), member 2	SLC31A2	1318	ENSG00000136867			Slc31a2 (MGI:1333844)
chr9	113165035	113221360	9q32	9q32	617398	FKBP15, FKBP133, KIAA0674, WAFL	FK506-binding protein 15	FKBP15	23307	ENSG00000119321			Fkbp15 (MGI:2444782)
chr9	113221527	113264491	9q31-q32	9q32	603085	SLC31A1, COPT1, CTR1	Solute carrier family 31 (copper transporter), member 1	SLC31A1	1317	ENSG00000136868			Slc31a1 (MGI:1333843)
chr9	113267007	113275588	9q32	9q32	614533	CDC26, APC12	Cell division cycle 26, S. cerevisiae, homolog of	CDC26	246184	ENSG00000176386	pseudogene on 7q32.1		Cdc26 (MGI:1913690)
chr9	113275633	113292904	9q31-q33	9q32	607795	PRPF4, PRP4, HPRP4, RP70	Precursor mRNA-processing factor 4, S. cerevisiae, homolog of	PRPF4	9128	ENSG00000136875		Retinitis pigmentosa 70, 615922 (3), Autosomal dominant	Prpf4 (MGI:1917302)
chr9	113386311	113401337	9q34	9q32	125270	ALAD, ALADH, PBGS	Aminolevulinate, delta-, dehydratase	ALAD	210	ENSG00000148218	linked to ABO; ORM-ALAD-AK-ABO	{Lead poisoning, susceptibility to}, 612740 (3), Autosomal recessive; Porphyria, acute hepatic, 612740 (3), Autosomal recessive	Alad (MGI:96853)
chr9	113407234	113410748	9q33	9q32	607267	POLE3, CHARAC17, YBL1	Polymerase, DNA, epsilon-3	POLE3	54107	ENSG00000148229			Pole3 (MGI:1933378)
chr9	113444031	113597742	9q31-q33	9q32	602189	RGS3	Regulator of G-protein signaling-3	RGS3	5998	ENSG00000138835			Rgs3 (MGI:1354734)
chr9	113876281	114056594	9q32	9q32	617077	ZNF618, NEDD10, KIAA1952	Zinc finger protein 618	ZNF618	114991	ENSG00000157657			Zfp618 (MGI:1919950)
chr9	114060126	114078471	9q32-q33	9q32	176870	AMBP, ITIL, ITI, HCP	Alpha-1-microglobulin/bikunin precursor (inter-alpha-trypsin inhibitor, light chain; protein HC)	AMBP	259	ENSG00000106927			Ambp (MGI:88002)
chr9	114091622	114100089	9q32	9q32	611278	KIF12	Kinesin family member 12	KIF12	113220	ENSG00000136883			Kif12 (MGI:1098232)
chr9	114154270	114312515	9q32	9q32	608461	COL27A1, KIAA1870, STLS	Collagen, type XXVII, alpha-1	COL27A1	85301	ENSG00000196739	mutation identified in 1 STLS family	?Steel syndrome, 615155 (3), Autosomal recessive	Col27a1 (MGI:2672118)
chr9	114323022	114326478	9q34.1-q34.3	9q32	138600	ORM1, AGP1	Orosomucoid-1 (alpha-1-acid glycoprotein-1)	ORM1	5004	ENSG00000229314	linked to ABO, AK1, ALAD		
chr9	114329788	114333255	9q34.1-q34.3	9q32	138610	ORM2	Orosomucoid-2	ORM2	5005	ENSG00000228278			
chr9	114402077	114505499	9q32-q34	9q32	607928	WHRN, CIP98, KIAA1526, DFNB31, USH2D	Whirlin	WHRN	25861	ENSG00000095397		Deafness, autosomal recessive 31, 607084 (3), Autosomal recessive; Usher syndrome, type 2D, 611383 (3), Autosomal recessive	Whrn (MGI:2682003)
chr9	114587713	114598871	Chr.9	9q32	607296	ATP6V1G1, ATP6G1	ATPase, H+ transporting, lysosomal, 13kD, V1 subunit G, isoform 1	ATP6V1G1	9550	ENSG00000136888			Atp6v1g1 (MGI:1913540)
chr9	114784634	114806127	9q32	9q32	604052	TNFSF15, TL1, VEGI	Tumor necrosis factor ligand superfamily, member 15 (vascular endothelial growth inhibitor)	TNFSF15	9966	ENSG00000181634			Tnfsf15 (MGI:2180140)
chr9	114893342	114930673	9q33	9q32-q33	603875	TNFSF8, CD30L, CD30LG	Tumor necrosis factor ligand superfamily, member 8 (CD30 ligand)	TNFSF8	944	ENSG00000106952			Tnfsf8 (MGI:88328)
chr9	114900000	127500000	9q33		613207	ASRT8	Asthma-related traits, susceptibility to, 8		100415896		associated with rs3789873	{Asthma-related traits, susceptibility to, 8}, 613207 (2)	
chr9	115019574	115118256	9q33	9q33.1	187380	TNC, HXB, DFNA56	Tenascin C (hexabrachion)	TNC	3371	ENSG00000041982	proximal to ABL	Deafness, autosomal dominant 56, 615629 (3), Autosomal dominant	Tnc (MGI:101922)
chr9	115141817	115402643	9q32	9q33.1	604767	DEC1	Deleted in esophageal cancer 1	DEC1	50514	ENSG00000173077		Esophageal squamous cell carcinoma, 133239 (1), Autosomal dominant	
chr9	116153751	116402320	9q33.1	9q33.1	176385	PAPPA	Pregnancy-associated plasma protein A	PAPPA	5069	ENSG00000182752			Pappa (MGI:97479)
chr9	116398156	116400605	9q33.1	9q33.1	610689	DIPAS	DIPLA1, antisense	PAPPA-AS1	493913				
chr9	116425224	117415038	9q33.1	9q33.1	612856	ASTN2, KIAA0634	Astrotactin 2	ASTN2	23245	ENSG00000148219			Astn2 (MGI:1889277)
chr9	116687301	116701299	9q31-q34.1	9q33.1	602290	TRIM32, HT2A, LGMD2H, BBS11	Tripartite-motif-containing protein 32	TRIM32	22954	ENSG00000119401	mutation identified in 1 BBS11 family	?Bardet-Biedl syndrome 11, 615988 (3), Autosomal recessive; Muscular dystrophy, limb-girdle, type 2H, 254110 (3), Autosomal recessive	Trim32 (MGI:1917057)
chr9	117704174	117717490	9q32-q33	9q33.1	603030	TLR4	Toll-like receptor-4	TLR4	7099	ENSG00000136869			Tlr4 (MGI:96824)
chr9	119166629	119369460	9q33.1	9q33.1	602865	BRINP1, DBC1, DBCCR1	Bone morphogenetic protein/retinoic acid-inducible neural-specific protein 1	BRINP1	1620	ENSG00000078725			Brinp1 (MGI:1928478)
chr9	120388868	120580169	9q33.3	9q33.2	608201	CDK5RAP2, KIAA1633, MCPH3	CDK5 regulatory subunit-associated protein 2	CDK5RAP2	55755	ENSG00000136861		Microcephaly 3, primary, autosomal recessive, 604804 (3), Autosomal recessive	Cdk5rap2 (MGI:2384875)
chr9	120600917	120714486	9q32-q33.3	9q33.2	604268	MEGF9, EGFL5	Multiple epidermal growth factor-like domains 9	MEGF9	1955	ENSG00000106780			Megf9 (MGI:1918264)
chr9	120756975	120793461	9q34	9q33.2	609071	FBXW2, FBW2, FWD2	F-box and WD40 domain protein 2	FBXW2	26190	ENSG00000119402			Fbxw2 (MGI:1353435)
chr9	120816052	120843020	9q33.2	9q33.2	604452	PSMD5, S5B	Proteasome 26S subunit, non-ATPase, 5	PSMD5	5711	ENSG00000095261			Psmd5 (MGI:1914248)
chr9	120855650	120902159	9q33.3	9q33.2	609740	PHF19	PHD finger protein 19	PHF19	26147	ENSG00000119403			Phf19 (MGI:1921266)
chr9	120902392	120929172	9q33-q34	9q33.2	601711	TRAF1	TNF receptor-associated factor 2	TRAF1	7185	ENSG00000056558			Traf1 (MGI:101836)
chr9	120952334	121075173	9q34.1	9q33.2	120900	C5, C5D, ECLZB	Complement component-5	C5	727	ENSG00000106804		C5 deficiency, 609536 (3); [Eculizumab, poor response to], 615749 (3), Autosomal dominant	Hc (MGI:96031)
chr9	121074772	121177609	9q33	9q33.2	605496	CEP1, CEP110, FAN	Centrosomal protein 1	CNTRL	11064	ENSG00000119397			Cntrl (MGI:1889576)
chr9	121178136	121202086	9q33.2	9q33.2	612673	RAB14	Ras-associated protein	RAB14	51552	ENSG00000119396			Rab14 (MGI:1915615)
chr9	121201482	121332843	9q34	9q33.2	137350	GSN	Gelsolin	GSN	2934	ENSG00000148180	40kb proximal to ABL	Amyloidosis, Finnish type, 105120 (3), Autosomal dominant	Gsn (MGI:95851)
chr9	121338987	121370303	9q34.1	9q33.2	133090	STOM, EPB72, BND7	Stomatin (erythrocyte membrane protein band 7.2)	STOM	2040	ENSG00000148175	proximal to ABL		Stom (MGI:95403)
chr9	121455040	121500026	9q33-q34	9q33.2	104175	GGTA1P, GGTA1	Glycoprotein, alpha-galactosyltransferase-1 pseudogene	GGTA1P	2681		processed pseudogene GGTA1P on 12q14-q15		
chr9	121566882	121785529	9q33	9q33.2	609205	DAB2IP, AIP1, KIAA1743	DAB2-interacting protein	DAB2IP	153090	ENSG00000136848			Dab2ip (MGI:1916851)
chr9	122132465	122159818	9q33.2-q34.11	9q33.2	603359	NDUFA8	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 8	NDUFA8	4702	ENSG00000119421			Ndufa8 (MGI:1915625)
chr9	122185625	122228892	9q33.2	9q33.2	608215	LHX6	LIM homeobox gene 6	LHX6	26468	ENSG00000106852			Lhx6 (MGI:1306803)
chr9	122264602	122325314	9q32-q34.1	9q33.2	604602	MRFF, RRF	Ribosome-recycling factor, mitochondrial	MRRF	92399	ENSG00000148187			Mrrf (MGI:1915121)
chr9	122369905	122395702	9q32-q33.3	9q33.2	176805	PTGS1, COX1, PGHS1, COX3, PCOX1	Prostaglandin-endoperoxide synthase 1 (prostaglandin G/H synthase and cyclooxygenase)	PTGS1	5742	ENSG00000095303			Ptgs1 (MGI:97797)
chr9	122816057	122828655	Chr.9	9q33.2	604421	PDCL	Phosducin-like	PDCL	5082	ENSG00000136940			Pdcl (MGI:1914716)
chr9	122844564	122905350	9q34	9q33.2	615231	RC3H2, MNAB	RING finger and CCCH-type zinc finger domains-containing protein 2	RC3H2	54542	ENSG00000056586			Rc3h2 (MGI:2442789)
chr9	122931639	123104868	9q33.2-q33.3	9q33.2-q33.3	615882	RABGAP1, GAPCENA, TBC1D11	RAB GTPase-activating protein 1	RABGAP1	23637	ENSG00000011454			Rabgap1 (MGI:2385139)
chr9	123033634	123042750	9q33	9q33.2	601909	GPR21	G protein-coupled receptor-21	GPR21	2844	ENSG00000011454			Gpr21 (MGI:2441890)
chr9	123109493	123268575	9q34	9q33.3	611138	STRBP, SPNR, p74	Spermatid perinuclear RNA-binding protein	STRBP	55342	ENSG00000165209			Strbp (MGI:104626)
chr9	123354064	123380334	9q33.3	9q33.3	609720	CRB2, FSGS9, VMCKD	Crumbs, Drosophila, homolog of	CRB2	286204	ENSG00000148204		Focal segmental glomerulosclerosis 9, 616220 (3), Autosomal recessive; Ventriculomegaly with cystic kidney disease, 219730 (3), Autosomal recessive	Crb2 (MGI:2679260)
chr9	123379653	123930157	9q33.2	9q33.3	613633	DENND1A, KIAA1608	DENN/MADD domain-containing protein 1A	DENND1A	57706	ENSG00000119522			Dennd1a (MGI:2442794)
chr9	124011609	124033162	9q33-q34.1	9q33.3	603759	LHX2, LH2	LIM/homeodomain protein LHX2	LHX2	9355	ENSG00000106689			Lhx2 (MGI:96785)
chr9	124257605	124352441	9q33.3-q34.11	9q33.3	604884	NEK6	Never-in-mitosis gene A-related kinase 6	NEK6	10783	ENSG00000119408			Nek6 (MGI:1891638)
chr9	124353464	124415472	9q34.11-q34.12	9q33.3	604030	PSMB7	Proteasome subunit, beta-type, 7	PSMB7	5695	ENSG00000136930			Psmb7 (MGI:107637)
chr9	124481235	124507419	9q33	9q33.3	184757	NR5A1, FTZF1, FTZ1, SF1, AD4BP, POF7, SRXY3, SPGF8, SRXX4	Nuclear receptor subfamily 5, group A, member 1	NR5A1	2516	ENSG00000136931		Adrenocortical insufficiency, 612964 (3), Autosomal dominant; Premature ovarian failure 7, 612964 (3), Autosomal dominant; Spermatogenic failure 8, 613957 (3), Autosomal dominant; 46, XX sex reversal 4, 617480 (3), Autosomal dominant; 46XY sex reversal 3, 612965 (3), Autosomal dominant	Nr5a1 (MGI:1346833)
chr9	124517274	124771309	9q33-q34.1	9q33.3	602778	GCNF	Germ cell nuclear factor	NR6A1	2649	ENSG00000148200			Nr6a1 (MGI:1352459)
chr9	124692441	124692550	9q33.3	9q33.3	612743	MIR181A2, MIRN181A2	Micro RNA 181A2	MIR181A2	406954				
chr9	124693709	124693797	9q33.3	9q33.3	612745	MIR181B2, MIRN181B2	Micro RNA 181B2	MIR181B2	406956				
chr9	124777157	124814890	9q33.3	9q33.3	615899	OLFML2A	Olfactomedin-like 2A	OLFML2A	169611	ENSG00000185585			Olfml2a (MGI:2444741)
chr9	124878293	124941406	9q33.3	9q33.3	602502	GOLGA1	Golgi autoantigen, golgin subfamily A, 1	GOLGA1	2800	ENSG00000136935			Golga1 (MGI:1924149)
chr9	125146572	125189938	9q33.3	9q33.3	612725	PPP6C	Protein phosphatase 6, catalytic subunit	PPP6C	5537	ENSG00000119414	highly related sequence on Xq22.3		Ppp6c (MGI:1915107)
chr9	125234847	125241386	9q34	9q33.3	138120	HSPA5, GRP78	Heat-shock 70kD protein-5 (glucose-regulated protein, 78kD)	HSPA5	3309	ENSG00000044574			Hspa5 (MGI:95835)
chr9	125261793	125367206	9q33.3	9q33.3	611714	GAPVD1, RAP6, GAPEX5, KIAA1521	GTPase-activating protein and VPS9 domains 1	GAPVD1	26130	ENSG00000165219			Gapvd1 (MGI:1913941)
chr9	125437393	125707233	9q33.3	9q33.3	610558	MAPKAP1, SIN1, MIP1, JC310	Mitogen-activated protein kinase-associated protein 1	MAPKAP1	79109	ENSG00000119487			Mapkap1 (MGI:2444554)
chr9	125747337	125967376	9q33-q34	9q33.3	176312	PBX3	Pre-B-cell leukemia transcription factor-3	PBX3	5090	ENSG00000167081			Pbx3 (MGI:97496)
chr9	126614442	126701031	9q34.1	9q33.3	602575	LMX1B, NPS1	LIM homeo box transcription factor 1, beta	LMX1B	4010	ENSG00000136944		Nail-patella syndrome, 161200 (3), Autosomal dominant	Lmx1b (MGI:1100513)
chr9	126860664	126885877	9q33.3	9q33.3	611692	ZBTB34, KIAA1993	Zinc finger- and BTB domain-containing protein 34	ZBTB34	403341	ENSG00000177125			Zbtb34 (MGI:2685195)
chr9	126914773	127223165	9q33.3	9q33.3	614444	RALGPS1, RALGEF2, KIAA0351	Ral guanine nucleotide exchange factor with PH domain and SH3 domain-binding motif 1	RALGPS1	9649	ENSG00000136828			Ralgps1 (MGI:1922008)
chr9	127087348	127122764	9q33.3	9q33.3	605001	ANGPTL2, ARP2	Angiopoietin-like 2	ANGPTL2	23452	ENSG00000136859			Angptl2 (MGI:1347002)
chr9	127397137	127407897	Chr.9	9q33.3	605245	SLC2A8, GLUT8	Solute carrier family 2, (facilitated glucose transporter) member 8	SLC2A8	29988	ENSG00000136856			Slc2a8 (MGI:1860103)
chr9	127424373	127446288	9q34	9q33.3	194552	ZNF79	Zinc finger protein-79 (pT7)	ZNF79	7633	ENSG00000196152			
chr9	127447673	127451431	9q33.3	9q33.3	180475	RPL12	Ribosomal protein L12	RPL12	6136	ENSG00000197958			Rpl12 (MGI:98002)
chr9	127451485	127503500	9q33.3-q34.11	9q33.3-q34.1	610933	LRSAM1, TAL, RIFLE, CMT2P	Leucine-rich repeat- and sterile alpha motif-containing 1	LRSAM1	90678	ENSG00000148356		Charcot-Marie-Tooth disease, axonal, type 2P, 614436 (3), Autosomal recessive, Autosomal dominant	Lrsam1 (MGI:2684789)
chr9	127500000	133100000	9q34.1		612557	CLLS3	Leukemia, chronic lymphocytic, susceptibility to, 3		100270642		associated with SNP -6531 upstream of DAPK1 promoter	{Leukemia, chronic lymphocytic, susceptibility to, 3}, 612557 (2)	
chr9	127500000	138394717	9q34		614623	KTCN6	Keratoconus 6		100885802		max lod at 159cM	Keratoconus 6, 614623 (2), Autosomal dominant	
chr9	127505337	127579006	9q34.13	9q34.11	614045	FAM129B, MINERVA	Family with sequence similarity 129, member B	FAM129B	64855	ENSG00000136830			Fam129b (MGI:2442910)
chr9	127612206	127692715	9q34.1	9q34.11	602926	STXBP1, UNC18, EIEE4	Syntaxin-binding protein 1	STXBP1	6812	ENSG00000136854		Epileptic encephalopathy, early infantile, 4, 612164 (3), Autosomal dominant	Stxbp1 (MGI:107363)
chr9	127731523	127735348	9q34.11	9q34.11	608052	TOR2A, TORP1	Torsin 2A	TOR2A	27433	ENSG00000160404			Tor2a (MGI:1353596)
chr9	127738316	127778768	9q34.11	9q34.11	604722	SH2D3C, NSP3	SH2 domain-containing protein 3C	SH2D3C	10044	ENSG00000095370			Sh2d3c (MGI:1351631)
chr9	127785537	127790781	9q34.1	9q34.11	603251	CDK9, CDC2L4	Cyclin-dependent kinase-9	CDK9	1025	ENSG00000136807			Cdk9 (MGI:1328368)
chr9	127785917	127786006	9q34.11	9q34.11	613405	MIR2861, MIRN2861, BMND15	Micro RNA 2861	MIR2861	100422910			[Bone mineral density QTL 15], 613418 (3), Autosomal recessive, Autosomal dominant	
chr9	127802857	127814519	9cen-q34	9q34.11	136510	FPGS	Folylpolyglutamate synthetase	FPGS	2356	ENSG00000136877			Fpgs (MGI:95576)
chr9	127815011	127854772	9q34.1	9q34.11	131195	ENG, END, HHT1, ORW	Endoglin	ENG	2022	ENSG00000106991		Telangiectasia, hereditary hemorrhagic, type 1, 187300 (3), Autosomal dominant	Eng (MGI:95392)
chr9	127866479	127885541	9q34.1	9q34.11	103000	AK1	Adenylate kinase-1	AK1	203	ENSG00000106992	proximal to Ph1 break, 9q34.1; AK1 to ORM = 17cM	Hemolytic anemia due to adenylate kinase deficiency, 612631 (3), Autosomal recessive	Ak1 (MGI:87977)
chr9	127885320	127906763	9q34.11	9q34.11	610135	ST6GALNAC6, SIAT7F	ST6 alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6	ST6GALNAC6	30815	ENSG00000160408			St6galnac6 (MGI:1355316)
chr9	127907885	127917051	9q31	9q34.11	606378	SIAT7D, SIAT3C	Sialyltransferase 7D	ST6GALNAC4	27090	ENSG00000136840			St6galnac4 (MGI:1341894)
chr9	127920885	127931957	9q34.11	9q34.11	612865	PIP5KL1, PIPKH	Phosphatidylinositol-4-phosphate-5-kinase-like 1	PIP5KL1	138429	ENSG00000167103			Pip5kl1 (MGI:2448520)
chr9	127935094	127938483	9q34.11	9q34.11	603564	DPM2, CDG1U	Dolichyl-phosphate mannosyltransferase 2, regulatory subunit	DPM2	8818	ENSG00000136908		Congenital disorder of glycosylation, type Iu, 615042 (3), Autosomal recessive	Dpm2 (MGI:1330238)
chr9	127940581	127980532	9q34.13	9q34.11	610891	FAM102A, EEIG1	Family with sequence similarity 102, member A	FAM102A	399665	ENSG00000167106			Fam102a (MGI:2138935)
chr9	128061232	128067866	9q34.11	9q34.11	610673	C9orf90, NAIF1	Nuclear apoptosis-inducing factor 1	NAIF1	203245	ENSG00000171169			Naif1 (MGI:1918504)
chr9	128120692	128128461	9q34.13	9q34.11	608152	PTGES2, PGES2, GBF1	Prostaglandin E synthase 2	PTGES2	80142	ENSG00000148334			Ptges2 (MGI:1917592)
chr9	128149429	128153454	9q34	9q34.11	600181	LCN2, NGAL	Lipocalin 2 (oncogene 24p3)	LCN2	3934	ENSG00000148346			Lcn2 (MGI:96757)
chr9	128166064	128204382	9q34	9q34.11	611420	CIZ1, ZNF356, LSFR1, NP94	CDKN1A-interacting zinc finger protein 1	CIZ1	25792	ENSG00000148337			Ciz1 (MGI:1920234)
chr9	128203354	128255247	9q34	9q34.11	602377	DNM1, EIEE31	Dynamin-1	DNM1	1759	ENSG00000106976		Epileptic encephalopathy, early infantile, 31, 616346 (3), Autosomal dominant	Dnm1 (MGI:107384)
chr9	128244720	128244829	9q34.11	9q34.11	614791	MIR199B	Micro RNA 199B	MIR199B	406978				
chr9	128255828	128276006	9q34.11	9q34.11	602580	GOLGA2, GM130	Golgi autoantigen, golgin subfamily A, 2	GOLGA2	2801	ENSG00000167110			Golga2 (MGI:2139395)
chr9	128275363	128288989	9q34.11	9q34.11	616528	SWI5, SAE3, C9orf119	SWi5 homologous recombination repair protein	SWI5	375757	ENSG00000175854			Swi5 (MGI:1920181)
chr9	128309099	128322779	9q34.11	9q34.11	610727	TRUB2	TRUB pseudouridine synthase, E. coli, homolog of, 2	TRUB2	26995	ENSG00000167112			Trub2 (MGI:2442186)
chr9	128322485	128334071	9q34.13	9q34.11	612898	COQ4, COQ10D7	Coenzyme Q4, S. cerevisiae, homolog of	COQ4	51117	ENSG00000167113		Coenzyme Q10 deficiency, primary, 7, 616276 (3), Autosomal recessive	Coq4 (MGI:1098826)
chr9	128340515	128361469	9q34	9q34.11	604194	SLC27A4, FATP4, IPS	Solute carrier family 27 (fatty acid transporter), member 4	SLC27A4	10999	ENSG00000167114		Ichthyosis prematurity syndrome, 608649 (3)	Slc27a4 (MGI:1347347)
chr9	128371318	128392015	9q34.11	9q34.11	612693	URM1	Ubiquitin-related modifier 1, S. cerevisiae, homolog of	URM1	81605	ENSG00000167118			Urm1 (MGI:1915455)
chr9	128405993	128437350	9q34.11	9q34.11	616626	CERCAM	Cerebral endothelial cell adhesion molecule	CERCAM	51148	ENSG00000167123			Cercam (MGI:2139134)
chr9	128455154	128501291	9q34	9q34.11	602015	ODF2, ODF84	Outer dense fiber of sperm tails 2	ODF2	4957	ENSG00000136811			Odf2 (MGI:1098824)
chr9	128504691	128542300	9q34	9q34.11	603371	GLE1, GLE1L, LCCS, LCCS1	Gle1, RNA export mediator, S. cerevisiae, homolog of	GLE1	2733	ENSG00000119392		Arthrogryposis, lethal, with anterior horn cell disease, 611890 (3); Lethal congenital contracture syndrome 1, 253310 (3), Autosomal recessive	Gle1 (MGI:1921662)
chr9	128552557	128633664	9q33-q34	9q34.11	182810	SPTAN1, NEAS, EIEE5	Spectrin, alpha, nonerythrocytic-1 (alpha-fodrin)	SPTAN1	6709	ENSG00000197694		Epileptic encephalopathy, early infantile, 5, 613477 (3), Autosomal dominant	Sptan1 (MGI:98386)
chr9	128633652	128656849	9q34.11	9q34.11	613363	WDR34, SRTD11	WD repeat-containing protein 34	WDR34	89891	ENSG00000119333		Short-rib thoracic dysplasia 11 with or without polydactyly, 615633 (3), Autosomal recessive	Wdr34 (MGI:1919070)
chr9	128683431	128696395	9q34	9q34.11	600960	SET	SET gene	SET	6418	ENSG00000119335	fused with CAIN in acute undifferentiated leukemia		Set (MGI:1860267)
chr9	128702496	128720919	9q34.11	9q34.11	610714	PKN3	Protein kinase N3	PKN3	29941	ENSG00000160447			Pkn3 (MGI:2388285)
chr9	128729785	128772506	9q34.11	9q34.11	617764	ZER1, ZYG11BL, C9orf60	Zyg11-related cell cycle regulator	ZER1	10444	ENSG00000160445			Zer1 (MGI:2442511)
chr9	128787206	128810431	9q34.11	9q34.11	616218	TBC1D13	TBC1 domain family, member 13	TBC1D13	54662	ENSG00000107021			Tbc1d13 (MGI:2385326)
chr9	128818401	128822675	9q34.1	9q34.11	600440	ENDOG	Endonuclease G	ENDOG	2021	ENSG00000167136			Endog (MGI:1261433)
chr9	128819650	128833308	9q34.11	9q34.11	617614	SPOUT1, CENP32, C9orf114	SPOUT domain-containing methyltransferase 1	SPOUT1	51490	ENSG00000198917			Spout1 (MGI:106544)
chr9	128833112	128882557	9q34.11	9q34.11	600547	CCBL1	Cysteine conjugate beta-lyase 1	KYAT1	883	ENSG00000171097			Kyat1 (MGI:1917516)
chr9	128882111	128918041	9q34.13	9q34.11	608360	LRRC8A, KIAA1437, AGM5	Leucine-rich repeat-containing 8A	LRRC8A	56262	ENSG00000136802	mutation identified in 1 AGM5 patient	?Agammaglobulinemia 5, 613506 (3), Autosomal dominant	Lrrc8a (MGI:2652847)
chr9	128945529	128947732	9q34.11	9q34.11	610746	DOLK, TMEM15, DK1, SEC59, KIAA1094, CDG1M	Dolichol kinase	DOLK	22845	ENSG00000175283		Congenital disorder of glycosylation, type Im, 610768 (3), Autosomal recessive	Dolk (MGI:2677836)
chr9	128947692	129007095	9q34.11	9q34.11	615587	NUP188, KIAA1069	Nucleoporin, 188kD	NUP188	23511	ENSG00000095319			Nup188 (MGI:2446190)
chr9	129080987	129090437	9q34.1	9q34.11	614516	DOLPP1, LSFR2	Dolichyl pyrophosphate phosphatase 1	DOLPP1	57171	ENSG00000167130			Dolpp1 (MGI:1914093)
chr9	129094793	129110797	9q34.1	9q34.11	600184	CRAT, CAT1, NBIA8	Carnitine acetyltransferase	CRAT	1384	ENSG00000095321	mutation identified in 1 NBIA8 patient	?Neurodegeneration with brain iron accumulation 8, 617917 (3), Autosomal recessive	Crat (MGI:109501)
chr9	129110948	129148945	9q34	9q34.11	600756	PPP2R4, PTPA	Protein phosphatase-2A, regulatory subunit B' (PR 53)	PTPA	5524	ENSG00000119383	proximal to ABL		Ptpa (MGI:1346006)
chr9	129608883	129636741	9q34.11	9q34.11	613560	NTMT1, METTL11A, NRMT, C9orf32	N-terminal X-Pro-Lys N-methyltransferase 1	NTMT1	28989	ENSG00000148335			Ntmt1 (MGI:1913867)
chr9	129634603	129642168	9q34.11	9q34.11	615051	ASB6	Ankyrin repeat- and SOCS box-containing protein 6	ASB6	140459	ENSG00000148331			Asb6 (MGI:1919573)
chr9	129665640	129722673	9q34.1	9q34.11	604675	PRRX2, PRX2	Paired-related homeo box gene 2	PRRX2	51450	ENSG00000167157			Prrx2 (MGI:98218)
chr9	129738335	129777578	9q34.3	9q34.11	605172	PTGES, PGES, PIG12, MGST1L1	Prostaglandin E synthase	PTGES	9536	ENSG00000148344			Ptges (MGI:1927593)
chr9	129803142	129811423	9q34	9q34.11	608050	TOR1B, DQ1	Torsin 1B	TOR1B	27348	ENSG00000136816	centromeric to TOR1A; pseudogene on chr.2		Tor1b (MGI:1353605)
chr9	129812941	129824161	9q34	9q34.11	605204	DYT1, TOR1A	Torsin A	TOR1A	1861	ENSG00000136827		{Dystonia-1, modifier of} (3); Dystonia-1, torsion, 128100 (3), Autosomal dominant	Tor1a (MGI:1353568)
chr9	129835416	129881837	9q34.11	9q34.11	615143	USP20, VDU2	Ubiquitin-specific protease 20	USP20	10868	ENSG00000136878			Usp20 (MGI:1921520)
chr9	129887186	130053845	9q34	9q34.11	606191	FNBP1, FBP17	Formin-binding protein 17	FNBP1	23048	ENSG00000187239	fused with MLL in chronic myeloid leukemia		Fnbp1 (MGI:109606)
chr9	130172577	130237303	9q34	9q34.11	603315	FREQ, NCS1	Frequenin, Drosophila, homolog of	NCS1	23413	ENSG00000107130			Ncs1 (MGI:109166)
chr9	130444706	130501273	9q34.1	9q34.11	603470	ASS1, ASS	Argininosuccinate synthetase 1	ASS1	445	ENSG00000130707	14 pseudogenes on 11 chromosomes, including X and Y and ASSP2 on 6p23-q12	Citrullinemia, 215700 (3), Autosomal recessive	Ass1 (MGI:88090)
chr9	130579572	130638351	9q34.11-q34.12	9q34.11-q34.12	603536	FUBP3, FBP3	FAR upstream element-binding protein 3	FUBP3	8939	ENSG00000107164			Fubp3 (MGI:2443699)
chr9	130664593	130682996	9q34.1	9q34.12	616458	PRDM12, HSAN8	PR domain-containing protein 12	PRDM12	59335	ENSG00000130711		Neuropathy, hereditary sensory and autonomic, type VIII, 616488 (3), Autosomal recessive	Prdm12 (MGI:2685844)
chr9	130693759	130704893	9q34.12	9q34.12	602238	EXOSC2, RRP4, SHRF	Exosome component 2	EXOSC2	23404	ENSG00000130713		Short stature, hearing loss, retinitis pigmentosa, and distinctive facies, 617763 (3), Autosomal recessive	Exosc2 (MGI:2385133)
chr9	130713880	130887674	9q34.1	9q34.12	189980	ABL1, CHDSKM	Abelson murine leukemia viral (v-abl) oncogene homolog 1	ABL1	25	ENSG00000097007	fusion hybrid gene with BCR1 in CML	Congenital heart defects and skeletal malformations syndrome, 617602 (3), Autosomal dominant; Leukemia, Philadelphia chromosome-positive, resistant to imatinib (3)	Abl1 (MGI:87859)
chr9	130893427	130896811	9q34.12	9q34.12	609795	QRFP, P518, 26RFA	Pyroglutamylated FR-amide peptide precursor protein	QRFP	347148	ENSG00000188710			Qrfp (MGI:3630329)
chr9	130902437	130939067	9q34.1	9q34.12	613357	FIBCD1	Fibrinogene C domain-containing protein 1	FIBCD1	84929	ENSG00000130720			Fibcd1 (MGI:2138953)
chr9	131009116	131093058	9q33-q34	9q34.12	604349	LAMC3, OCCM	Laminin, gamma-3	LAMC3	10319	ENSG00000050555		Cortical malformations, occipital, 614115 (3), Autosomal recessive	Lamc3 (MGI:1344394)
chr9	131100000	133100000	9q34.13		171720	ALPQTL1	Alkaline phosphatase, plasma level of, QTL 1		100196909		linkage with rs657152	{Alkaline phosphatase, plasma level of, QTL1}, 171720 (2), ?Autosomal dominant	
chr9	131125560	131234669	9q34.1	9q34.13	114350	NUP214, D9S46E, CAN, CAIN	Nucleoporin, 214kD	NUP214	8021	ENSG00000126883	fused with DEK in AML; fused with ABL1 in T-ALL	Leukemia, T-cell acute lymphoblastic, somatic, 613065 (3); Leukemia, acute myeloid, somatic, 601626 (3)	Nup214 (MGI:1095411)
chr9	131502901	131523805	9q34.1	9q34.13	607423	POMT1, MDDGA1, MDDGB1, MDDGC1	Protein O-mannosyltransferase 1	POMT1	10585	ENSG00000130714		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 1, 236670 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 1, 613155 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 1, 609308 (3), Autosomal recessive	Pomt1 (MGI:2138994)
chr9	131523795	131531274	9q34.2	9q34.13	609328	UCK1	Uridine/cytidine kinase 1	UCK1	83549	ENSG00000130717			Uck1 (MGI:98904)
chr9	131576769	131740067	9q34.3	9q34.13	600303	RAPGEF1, GRF2, C3G	RAP guanine nucleotide exchange factor 1	RAPGEF1	2889	ENSG00000107263			Rapgef1 (MGI:104580)
chr9	131860109	132079886	9q34	9q34.13	605044	MED27, CRSP8, CRAP34	Mediator complex subunit 27	MED27	9442	ENSG00000160563			Med27 (MGI:1916225)
chr9	132261355	132356725	9q34	9q34.13	608465	SETX, SCAR1, AOA2, ALS4	Senataxin	SETX	23064	ENSG00000107290		Amyotrophic lateral sclerosis 4, juvenile, 602433 (3), Autosomal dominant; Spinocerebellar ataxia, autosomal recessive 1, 606002 (3), Autosomal recessive	Setx (MGI:2443480)
chr9	132375547	132406850	9q34.13	9q34.13	600777	TTF1	Transcription termination factor, RNA polymerase I	TTF1	7270	ENSG00000125482			
chr9	132582605	132590252	9q34	9q34.13	605211	BARHL1	BARH-like 1	BARHL1	56751	ENSG00000125492			Barhl1 (MGI:1859288)
chr9	132592996	132670400	9q34.13	9q34.13	616533	DDX31, PPP1R25	DEAD box polypeptide 31	DDX31	64794	ENSG00000125485			Ddx31 (MGI:2682639)
chr9	132725573	132878810	9q34.13	9q34.13	615365	AK8	Adenylate kinase 8	AK8	158067	ENSG00000165695			Ak8 (MGI:1916120)
chr9	132891347	132945268	9q34	9q34.13	605284	TSC1, LAM	Hamartin (tuberous sclerosis 1 gene)	TSC1	7248	ENSG00000165699	linked to ABO, ABL	Focal cortical dysplasia, type II, somatic, 607341 (3); Lymphangioleiomyomatosis, 606690 (3); Tuberous sclerosis-1, 191100 (3), Autosomal dominant	Tsc1 (MGI:1929183)
chr9	132945544	132991696	9q34.13	9q34.13	604383	GFI1B, BDPLT17	Growth factor-independent 1B	GFI1B	8328	ENSG00000165702		Bleeding disorder, platelet-type, 17, 187900 (3), Autosomal recessive, Autosomal dominant	Gfi1b (MGI:1276578)
chr9	133030674	133058502	9q34.2	9q34.13	604890	GTF3C5, TFIIIC63	General transcription factor 3C, polypeptide 5	GTF3C5	9328	ENSG00000148308			Gtf3c5 (MGI:1917489)
chr9	133061977	133071862	9q34.3	9q34.13	114840	CEL, BSSL, CELL, MODY8	Carboxyl-ester lipase (bile-salt stimulated lipase)	CEL	1056	ENSG00000170835		Maturity-onset diabetes of the young, type VIII, 609812 (3), Autosomal dominant	Cel (MGI:88374)
chr9	133097719	133149219	9q34	9q34.1-q34.2	601619	RALGDS	ral guanine nucleotide dissociation stimulator	RALGDS	5900	ENSG00000160271			Ralgds (MGI:107485)
chr9	133152947	133163944	9q34	9q34.2	606074	GBGT1, FS	Globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 (Forssman synthetase)	GBGT1	26301	ENSG00000148288			Gbgt1 (MGI:2449143)
chr9	133205278	133223254	9q34	9q34.2	604606	OBP2B	Odorant-binding protein 2B	OBP2B	29989	ENSG00000171102			Obp2a (MGI:2387617)
chr9	133255175	133275213	9q34	9q34.2	110300	ABO	ABO glycosyltransferase	ABO	28	ENSG00000175164	linked to AK1	[Blood group, ABO system], 616093 (3)	Abo (MGI:2135738)
chr9	133330706	133336209	9q34	9q34.2	185642	SURF6	Surfeit-6	SURF6	6838	ENSG00000148296			Surf6 (MGI:98447)
chr9	133340900	133348155	9q34	9q34.2	185641	SURF5	Surfeit-5	MED22	6837	ENSG00000148297			Med22 (MGI:98446)
chr9	133348213	133351424	9q34	9q34.2	185640	RPL7A, SURF3	Ribosomal protein L7a (surfeit-3)	RPL7A	6130	ENSG00000148303	in cluster with SURF1		Rpl7a (MGI:1353472)
chr9	133351804	133356484	9q34	9q34.2	185620	SURF1, CMT4K	Surfeit-1	SURF1	6834	ENSG00000148290	distal to ABL, CAN	Charcot-Marie-Tooth disease, type 4K, 616684 (3), Autosomal recessive; Leigh syndrome, due to COX IV deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Surf1 (MGI:98443)
chr9	133356544	133361164	9q34	9q34.2	185630	SURF2	Surfeit-2	SURF2	6835	ENSG00000148291			Surf2 (MGI:98444)
chr9	133361448	133377948	9q34	9q34.2	185660	SURF4	Surfeit-4	SURF4	6836	ENSG00000148248			Surf4 (MGI:98445)
chr9	133406057	133418171	9q34	9q34.2	602930	REXO4, XPMC2H	RNA exonuclease 4, S. cerevisiae, homolog of	REXO4	57109	ENSG00000148300			Rexo4 (MGI:2684957)
chr9	133414338	133459402	9q34	9q34.2	604134	ADAMTS13, VWFCP, TTP	A disintegrin-like and metalloprotease with thrombospondin type 1 motif, 13	ADAMTS13	11093	ENSG00000160323		Thrombotic thrombocytopenic purpura, familial, 274150 (3), Autosomal recessive	Adamts13 (MGI:2685556)
chr9	133459964	133470786	9q34.2	9q34.2	613104	C9orf7, FLOWER	Flower, Drosophila, homolog of	CACFD1	11094	ENSG00000160325			Cacfd1 (MGI:1924317)
chr9	133471093	133479153	9q34	9q34.2	606813	SLC2A6	Solute carrier family 2, member 6	SLC2A6	11182	ENSG00000160326			Slc2a6 (MGI:2443286)
chr9	133514585	133524945	9q34.2	9q34.2	615345	MYMK, TMEM8C	Myomaker	MYMK	389827	ENSG00000187616		Carey-Fineman-Ziter syndrome, 254940 (3), Autosomal recessive	Mymk (MGI:1913389)
chr9	133532163	133575518	9q34.2	9q34.2	612277	ADAMTSL2, KIAA0605, GPHYSD1	ADAMTS-like protein 2	ADAMTSL2	9719	ENSG00000197859		Geleophysic dysplasia 1, 231050 (3), Autosomal recessive	Adamtsl2 (MGI:1925044)
chr9	133636362	133659343	9q34	9q34.2	609312	DBH	Dopamine-beta-hydroxylase	DBH	1621	ENSG00000123454	tightly linked to ABO	Dopamine beta-hydroxylase deficiency, 223360 (3), Autosomal recessive; [Dopamine-beta-hydroxylase activity levels, plasma] (3)	Dbh (MGI:94864)
chr9	133663073	133739957	9q34.2	9q34.2	604455	SARDH, SARD, SAR	Sarcosine dehydrogenase	SARDH	1757	ENSG00000123453		[Sarcosinemia], 268900 (3), Autosomal recessive	Sardh (MGI:2183102)
chr9	133761893	133992373	9q34	9q34.2	600428	VAV2	Oncogene VAV2	VAV2	7410	ENSG00000160293			Vav2 (MGI:102718)
chr9	134030304	134068532	9q34	9q34.2	601541	RING3L, ORFX	RING3-like gene (open reading frame X)	BRD3	8019	ENSG00000169925			Brd3 (MGI:1914632)
chr9	134164439	134164563	9q34.2	9q34.2	601429	RNU6ATAC, U6ATAC	RNA, U6ATAC small nuclear	RNU6ATAC	100151684				
chr9	134326462	134440585	9q34.3	9q34.2	180245	RXRA	Retinoid X receptor, alpha	RXRA	6256	ENSG00000186350	distal to DBH		Rxra (MGI:98214)
chr9	134641788	134844842	9q34.2-q34.3	9q34.3	120215	COL5A1, EDSCL1	Collagen V, alpha-1 polypeptide	COL5A1	1289	ENSG00000130635		Ehlers-Danlos syndrome, classic type, 1, 130000 (3), Autosomal dominant	Col5a1 (MGI:88457)
chr9	134864061	134890505	9q34	9q34.3	601624	FCN2	Ficolin (collagen/fibrinogen domain-containing lectin) 2	FCN2	2220	ENSG00000160339			
chr9	134903235	134918002	9q34	9q34.3	601252	FCN1	Ficolin (collagen/fibrinogen domain-containing) 1	FCN1	2219	ENSG00000085265			Fcnb (MGI:1341158)
chr9	135075242	135121183	Chr.9	9q34.3	605366	OLFM1, AMY	Olfactomedin 1	OLFM1	10439	ENSG00000130558			Olfm1 (MGI:1860437)
chr9	135477649	135488893	9q34.3	9q34.3	614056	PPP1R26, KIAA0649	Protein phosphatase 1, regulatory subunit 26	PPP1R26	9858	ENSG00000196422			Ppp1r26 (MGI:2685193)
chr9	135495179	135499914	9q34.3	9q34.3	614502	C9orf116, PIERCE1	p53-induced expression in RB-null cells 1	C9orf116	138162	ENSG00000160345			1700007K13Rik (MGI:1916577)
chr9	135499988	135504672	9q34	9q34.3	611971	MRPS2	Mitochondrial ribosomal protein S2	MRPS2	51116	ENSG00000122140			Mrps2 (MGI:2153089)
chr9	135521295	135526539	9q34	9q34.3	151675	LCN1	Lipocalin 1 (protein migrating faster than albumin, tear prealbumin)	LCN1	3933	ENSG00000160349			
chr9	135544811	135549968	9q34	9q34.3	164320	OBP2A	Odorant-binding protein 2A	OBP2A	29991	ENSG00000122136			Obp2b (MGI:3651927)
chr9	135561626	135566775	9q34	9q34.3	173310	PAEP, PP14	Progestagen-associated endometrial protein (placental protein 14)	PAEP	5047	ENSG00000122133			
chr9	135623655	135641223	9q34.3	9q34.3	613699	GLT6D1, GT6M7, GLTDC1	Glycosyltransferase 6 domain-containing 1	GLT6D1	360203	ENSG00000204007			Glt6d1 (MGI:1918353)
chr9	135663321	135670730	9q34	9q34.3	612903	LCN9	Lipocalin 9	LCN9	392399	ENSG00000148386			Lcn9 (MGI:1924954)
chr9	135691861	135702111	9q34.3	9q34.3	610224	SOHLH1, NOHLH, TEB2, ODG5	Spermatogenesis- and oogenesis-specific basic helix-look-helix protein 1	SOHLH1	402381	ENSG00000165643		Ovarian dysgenesis 5, 617690 (3), Autosomal recessive	Sohlh1 (MGI:2684956)
chr9	135702184	135793146	9q34.3	9q34.3	608167	KCNT1, KIAA1422, EIEE14, ENFL5	Potassium channel, subfamily T, member 1	KCNT1	57582	ENSG00000107147		Epilepsy, nocturnal frontal lobe, 5, 615005 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 14, 614959 (3), Autosomal dominant	Kcnt1 (MGI:1924627)
chr9	135808486	135907550	9q34.3	9q34.3	613774	CAMSAP1	Calmodulin-regulated spectrin-associated protein 1	CAMSAP1	157922	ENSG00000130559			Camsap1 (MGI:3036242)
chr9	135932968	135961379	9q34.3	9q34.3	608129	UBAC1, GBDR1	Ubiquitin-associated domain-containing protein 1	UBAC1	10422	ENSG00000130560			Ubac1 (MGI:1920995)
chr9	136006536	136095284	9q34.3	9q34.3	615786	NACC2, RBB	NACC family, member 2, BEN and BTB/POZ domains-containing	NACC2	138151	ENSG00000148411			Nacc2 (MGI:1915241)
chr9	136196249	136205128	9q34.3	9q34.3	600577	LHX3, CPHD3	LIM/homeodomain protein LHX3	LHX3	8022	ENSG00000107187	in mouse, close to Notch1; centromeric to ABL	Pituitary hormone deficiency, combined, 3, 221750 (3), Autosomal recessive	Lhx3 (MGI:102673)
chr9	136206332	136245840	9q34.3	9q34.3	612860	QSOX2, SOXN	Quiescin Q6 sulfhydryl oxidase 2	QSOX2	169714	ENSG00000165661			Qsox2 (MGI:2387194)
chr9	136363955	136373680	9q34.3	9q34.3	607212	CARD9, CANDF2	Caspase recruitment domain-containing protein 9	CARD9	64170	ENSG00000187796		Candidiasis, familial, 2, autosomal recessive, 212050 (3), Autosomal recessive	Card9 (MGI:2685628)
chr9	136375568	136400219	9q34.3	9q34.3	602777	SNAPC4, SNAP190	Small nuclear RNA-activating protein complex, polypeptide 4	SNAPC4	6621	ENSG00000165684			Snapc4 (MGI:2443935)
chr9	136410572	136423760	9q34.3	9q34.3	613036	PMPCA, KIAA0123, SCAR2	Peptidase, mitochondrial processing, alpha	PMPCA	23203	ENSG00000165688		Spinocerebellar ataxia, autosomal recessive 2, 213200 (3), Autosomal recessive	Pmpca (MGI:1918568)
chr9	136428614	136439860	9q34.3	9q34.3	613037	INPP5E, MORMS, JBTS1, CORS1	Inositol polyphosphate-5-phosphatase, 72kD	INPP5E	56623	ENSG00000148384		Joubert syndrome 1, 213300 (3), Autosomal recessive; Mental retardation, truncal obesity, retinal dystrophy, and micropenis, 610156 (3), Autosomal recessive	Inpp5e (MGI:1927753)
chr9	136440095	136484551	9q34.3	9q34.3	612854	SEC16A, SEC16L, KIAA0310, p250	Sec16, S. Cerevisiae, homolog of, A	SEC16A	9919	ENSG00000148396			Sec16a (MGI:2139207)
chr9	136494432	136545785	9q34.3	9q34.3	190198	NOTCH1, TAN1, AOS5, AOVD1	Notch, Drosophila, homolog of, 1, translocation-associated	NOTCH1	4851	ENSG00000148400		Adams-Oliver syndrome 5, 616028 (3), Autosomal dominant; Aortic valve disease 1, 109730 (3), Autosomal dominant	Notch1 (MGI:97363)
chr9	136654752	136672677	9q34.3	9q34.3	608582	EGFL7	Epidermal growth factor-like 7	EGFL7	51162	ENSG00000172889			Egfl7 (MGI:2449923)
chr9	136670601	136670685	9q34.3	9q34.3	611767	MIR126, MIRN126	Micro RNA 126	MIR126	406913				
chr9	136673142	136687458	9q34.3	9q34.3	603100	AGPAT2, LPAAB, BSCL, BSCL1	1-acylglycerol-3-phosphate O-acyltransferase 2 (lysophosphatidic acid acyltransferase-beta)	AGPAT2	10555	ENSG00000169692		Lipodystrophy, congenital generalized, type 1, 608594 (3), Autosomal recessive	Agpat2 (MGI:1914762)
chr9	136712571	136724717	9q34.3	9q34.3	614543	FAM69B	Family with sequence similarity 69, member B	FAM69B	138311	ENSG00000165716			Fam69b (MGI:1927576)
chr9	136738166	136742958	9q34	9q34.3	612904	LCN10	Lipocalin 10	LCN10	414332	ENSG00000187922			Lcn10 (MGI:1925000)
chr9	136744016	136748527	9q34	9q34.3	609379	LCN6	Lipocalin 6	LCN6	158062	ENSG00000267206			Lcn6 (MGI:3045364)
chr9	136754387	136758550	9q34	9q34.3	612902	LCN8	Lipocalin 8	LCN8	138307	ENSG00000204001			Lcn8 (MGI:2135945)
chr9	136796337	136807740	9q34.3	9q34.3	615955	CCDC183, KIAA1984	Coiled-coil domain-containing protein 183	CCDC183	84960	ENSG00000213213			Ccdc183 (MGI:1924308)
chr9	136807921	136841186	9q34.3	9q34.3	610615	RABL6, PARF, C9orf86	RAB-like protein 6	RABL6	55684	ENSG00000196642			Rabl6 (MGI:2442633)
chr9	136848815	136851042	9q34.3	9q34.3	610167	PHPT1	Phosphohistidine phosphatase 1	PHPT1	29085	ENSG00000054148			Phpt1 (MGI:1922704)
chr9	136852366	136860798	9q34.3	9q34.3	617208	MAMDC4	MAM domain-containing protein 4	MAMDC4	158056	ENSG00000177943			Mamdc4 (MGI:2685841)
chr9	136881932	136926614	9q34.3	9q34.3	601895	TRAF2, TRAP	TNF receptor-associated factor 2	TRAF2	7186	ENSG00000127191			Traf2 (MGI:101835)
chr9	136940432	136944773	9q34.3	9q34.3	609072	FBXW5, FBW5	F-box and WD40 domain protein 5	FBXW5	54461	ENSG00000159069			Fbxw5 (MGI:1354731)
chr9	136944869	136946980	9q34.3	9q34.3	120930	C8G	Complement component-8, gamma polypeptide	C8G	733	ENSG00000176919			C8g (MGI:88237)
chr9	136949179	136955504	9q34	9q34.3	612905	LCN12	Lipocalin 12	LCN12	286256	ENSG00000184925			Lcn12 (MGI:1924951)
chr9	136977503	136981741	9q34.2-q34.3	9q34.3	176803	PTGDS	Prostaglandin D2 synthase (21kD, brain)	PTGDS	5730	ENSG00000107317	distal to ABL		Ptgds (MGI:99261)
chr9	136992417	136993987	9q34.3	9q34.3	616315	PAXX, C9orf142	Paralog of XRCC4 and XLF	PAXX	286257	ENSG00000148362			Paxx (MGI:2442831)
chr9	136994607	136997928	Chr.9	9q34.3	606533	CLIC3	Chloride intracellular channel 3	CLIC3	9022	ENSG00000169583			Clic3 (MGI:1916704)
chr9	137007233	137028921	9q34	9q34.3	600047	ABCA2, ABC2	ATP-binding cassette 2	ABCA2	20	ENSG00000107331			Abca2 (MGI:99606)
chr9	137030173	137032839	Chr.9	9q34.3	602030	FUT7	Fucosyltransferase 7 (alpha (1,3) fucosyltransferase)	FUT7	2529	ENSG00000180549			Fut7 (MGI:107692)
chr9	137039456	137046223	Chr.9	9q34.3	605798	NPDC1, CAB1	Neural proliferation, differentiation, and control protein 1	NPDC1	56654	ENSG00000107281			Npdc1 (MGI:1099802)
chr9	137048097	137054050	9q34	9q34.3	602012	ENTPD2, CD39L1	Ectonucleoside triphosphate diphosphohydrolase 2	ENTPD2	954	ENSG00000054179	same cosmid as ABC2		Entpd2 (MGI:1096863)
chr9	137062126	137070575	9q34.3	9q34.3	612057	C9orf140, P42.3	Chromosome 9 open reading frame 140	SAPCD2	89958	ENSG00000186193			Sapcd2 (MGI:1919330)
chr9	137086926	137109186	9q34.3	9q34.3	604346	MAN1B1, MRT15	Mannosidase, alpha, class 1B member 1	MAN1B1	11253	ENSG00000177239		Mental retardation, autosomal recessive 15, 614202 (3), Autosomal recessive	Man1b1 (MGI:2684954)
chr9	137110539	137117979	9q34.3	9q34.3	610537	DPP7, QPP	Dipeptidyl peptidase VII	DPP7	29952	ENSG00000176978			Dpp7 (MGI:1933213)
chr9	137139091	137168761	9q34.3	9q34.3	138249	GRIN1, NMDAR1, NDHMSR, NDHMSD	Glutamate receptor, ionotropic, N-methyl D-aspartate 1	GRIN1	2902	ENSG00000176884		Neurodevelopmental disorder with or without hyperkinetic movements and seizures, autosomal dominant, 614254 (3), Autosomal dominant; Neurodevelopmental disorder with or without hyperkinetic movements and seizures, autosomal recessive, 617820 (3), Autosomal recessive	Grin1 (MGI:95819)
chr9	137168757	137170038	9q34.3	9q34.3	613505	LRRC26, CAPC	Leucine-rich repeat-containing protein 26	LRRC26	389816	ENSG00000184709			Lrrc26 (MGI:2385129)
chr9	137188601	137190369	9q34.3	9q34.3	610882	SSNA1, NA14	Sjogren syndrome nuclear autoantigen 1	SSNA1	8636	ENSG00000176101			Ssna1 (MGI:1915725)
chr9	137174783	137188604	Chr.9	9q34.3	606946	ANAPC2, APC2, KIAA1406	Anaphase-promoting complex, subunit 2	ANAPC2	29882	ENSG00000176248			Anapc2 (MGI:2139135)
chr9	137191616	137200710	9q34.3	9q34.3	613354	TPRN, C9orf75, DFNB79	Taperin	TPRN	286262	ENSG00000176058		Deafness, autosomal recessive 79, 613307 (3), Autosomal recessive	Tprn (MGI:2139535)
chr9	137204081	137205637	9q34.3	9q34.3	616499	TMEM203	Transmembrane protein 203	TMEM203	94107	ENSG00000187713			Tmem203 (MGI:2443597)
chr9	137205666	137219360	9q34.3	9q34.3	606073	NR1	NADPH-dependent FMN- and FAD-containing oxidoreductase	NDOR1	27158	ENSG00000188566			Ndor1 (MGI:1926047)
chr9	137230756	137236553	9q34	9q34.3	609826	SLC34A3, NPTIIC, HHRH	Solute carrier family 34 (sodium/phosphate cotransporter), member 3	SLC34A3	142680	ENSG00000198569		Hypophosphatemic rickets with hypercalciuria, 241530 (3), Autosomal recessive	Slc34a3 (MGI:2159410)
chr9	137241258	137243706	9q34.3	9q34.3	602660	TUBB4B, TUBB2C, LCAEOD	Tubulin, beta-4B	TUBB4B	10383	ENSG00000188229		Leber congenital amaurosis with early-onset deafness, 617879 (3), Autosomal dominant	Tubb4b (MGI:1915472)
chr9	137255299	137273547	9q34	9q34.3	611180	COBRA1, NELFB, KIAA1182	Cofactor of BRCA1	NELFB	25920	ENSG00000188986			Nelfb (MGI:1931035)
chr9	137423371	137434405	9q34.3	9q34.3	611255	NOXA1	NADPH oxidase activator 1	NOXA1	10811	ENSG00000188747			Noxa1 (MGI:2449980)
chr9	137434363	137441709	9q34	9q34.3	616748	ENTPD8	Ectonucleoside triphosphate diphosphohydrolase 8	ENTPD8	377841	ENSG00000188833			Entpd8 (MGI:1919340)
chr9	137447569	137459333	9q34.3	9q34.3	608137	NSMF, NELF, HH9	NMDA receptor synaptonuclear signaling and neuronal migration factor	NSMF	26012	ENSG00000165802		Hypogonadotropic hypogonadism 9 with or without anosmia, 614838 (3), Autosomal dominant	Nsmf (MGI:1861755)
chr9	137459398	137550665	9q34.3	9q34.3	612122	PNPLA7	Patatin-like phospholipase domain containing 7	PNPLA7	375775	ENSG00000130653			Pnpla7 (MGI:2385325)
chr9	137551856	137552554	9q34.3	9q34.3	611846	MRPL41, MRPL27	Mitochondrial ribosomal protein L41	MRPL41	64975	ENSG00000182154			Mrpl41 (MGI:1333816)
chr9	137554443	137578934	9q34.3	9q34.3	613210	WDR85	WD repeat-containing protein 85	DPH7	92715	ENSG00000148399			Dph7 (MGI:1914478)
chr9	137582078	137590484	9q34.3	9q34.3	611424	ZMYND19, MIZIP	Zinc finger MYND domain-containing protein 19	ZMYND19	116225	ENSG00000165724			Zmynd19 (MGI:1914437)
chr9	137618991	137836126	9q34.3	9q34.3	607001	EHMT1, EUHMTASE1, DEL9q34, KLEFS1	Euchromatic histone methyltransferase 1	EHMT1	79813	ENSG00000181090		Kleefstra syndrome 1, 610253 (3), Autosomal dominant	Ehmt1 (MGI:1924933)
chr9	137877788	138124623	9q34	9q34.3	601012	CACNA1B, CACNL1A5, DYT23	Calcium channel, voltage-dependent, L type, alpha 1B subunit	CACNA1B	774	ENSG00000148408	mutation identified in 1 DYT23 family	?Dystonia 23, 614860 (3), Autosomal dominant	Cacna1b (MGI:88296)
chr9	0	138394717	Chr.9		187290	H142T	Temperature sensitivity complementation, H142		8023				
chr10	0	39800000	10p		603188	BMIQ8	Body mass index quantitative trait locus 8		56694			{Obesity, susceptibility to, BMIQ8}, 603188 (2)	
chr10	0	39800000	10p		607499	BULN	Bulimia nervosa, susceptibility to		337893		between D10S1430 and D10S1423	{Bulimia nervosa, susceptibility to}, 607499 (2), Multifactorial	
chr10	0	6600000	10p15		611384	PFFE1	Plasmodium falciparum fever episodes QTL1		101910199			{Plasmodium falciparum fever episodes QTL1}, 611384 (2)	
chr10	0	51100000	10pter-q11		601188	ST12, PAC1	Suppression of tumorigenicity 12, prostate					Prostate adenocarcinoma, 601188 (2)	
chr10	46436	49503	10p15.3	10p15.3	616768	TUBB8, OOMD2	Tubulin, beta 8	TUBB8	347688	ENSG00000261456		Oocyte maturation defect 2, 616780 (3), Autosomal recessive, Autosomal dominant	
chr10	134339	254636	10p14	10p15.3	608668	ZMYND11, BS69, BRAM1, MRD30	Zinc finger MYND domain-containing protein 11	ZMYND11	10771	ENSG00000015171		Mental retardation, autosomal dominant 30, 616083 (3), Autosomal dominant	Zmynd11 (MGI:1913755)
chr10	274189	689709	10p15.3	10p15.3	611380	DIP2C, KIAA0934	Disco-interacting protein 2, Drosophila, homolog of, C	DIP2C	22982	ENSG00000151240			Dip2c (MGI:1920179)
chr10	806913	931899	10p15.3	10p15.3	616513	LARP4B, LARP5, KIAA0217	La ribonucleoprotein domain family, member 4B	LARP4B	23185	ENSG00000107929			Larp4b (MGI:106330)
chr10	1018906	1025858	10p15	10p15.3	615389	IDI2, IPPI2	Isopentenyl-diphosphate delta isomerase 2	IDI2	91734	ENSG00000148377			
chr10	1022636	1044200	10p15	10p15.3	615391	IDI2AS1	IDI2 antisense RNA 1, noncoding	IDI2-AS1	55853				
chr10	1039418	1056715	10p15	10p15.3	604055	IDI1	Isopentenyl-diphosphate delta isomerase 1	IDI1	3422	ENSG00000067064			Idi1 (MGI:2442264)
chr10	1177312	1737475	10p15	10p15.3	602065	ADARB2, RED2	Adenosine deaminase, RNA-specific, B2 (homolog of rat BLUE)	ADARB2	105	ENSG00000185736			Adarb2 (MGI:2151118)
chr10	3067474	3136804	10p15.3-p15.2	10p15.2	171840	PFKP	Phosphofructokinase, platelet type	PFKP	5214	ENSG00000067057			Pfkp (MGI:1891833)
chr10	3775995	3785280	10p15	10p15.2	602053	KLF6, COPEB, BCD1, ZF9	Kruppel-like factor-6	KLF6	1316	ENSG00000067082		Gastric cancer, somatic, 613659 (3); Prostate cancer, somatic, 176807 (3)	Klf6 (MGI:1346318)
chr10	3800000	6600000	10p15.1		612594	MS2	Multiple sclerosis, susceptibility to, 2		100271694		associated with rs12722489 and rs2104286	{Multiple sclerosis, susceptibility to, 2}, 612594 (2)	
chr10	4824553	4908420	10p15.1	10p15.1	617451	AKR1E2, HTSP, TAKR	Aldo-keto reductase family 1, member E2	AKR1E2	83592	ENSG00000165568			Akr1e1 (MGI:1914758)
chr10	4963261	4979966	10p15-p14	10p15.1	600449	AKR1C1, DDH1, DD1, HAKRC	Aldo-keto reductase family 1, member 1 (dihydrodiol dehydrogenase, type 1)	AKR1C1	1645	ENSG00000187134			Akr1c21 (MGI:1924587)
chr10	4987774	5018032	10p15-p14	10p15.1	600450	AKR1C2, DDH2, DD2, HAKRD, SRXY8	Aldo-keto reductase family 1, member C2 (dihydrodiol dehydrogenase, type II)	AKR1C2	1646	ENSG00000151632		Obesity, hyperphagia, and developmental delay (3); 46XY sex reversal 8, 614279 (3), Autosomal recessive	Akr1c21 (MGI:1924587)
chr10	5048765	5107685	10p15-p14	10p15.1	603966	AKR1C3, HAKRB, DD3	Aldo-keto reductase family 1, member C3	AKR1C3	8644	ENSG00000196139			Akr1c18 (MGI:2145420)
chr10	5196834	5218946	10p15-p14	10p15.1	600451	AKR1C4, CHDR, CDR, HAKRA, DD4	Aldo-keto reductase family 1, member C4 (chlordecone reductase)	AKR1C4	1109	ENSG00000198610		{46XY sex reversal 8, modifier of}, 614279 (3), Autosomal recessive	Akr1c6 (MGI:1933427)
chr10	5524888	5526267	10pter-p13	10p15.1	114184	CALML3	Calmodulin-like 3	CALML3	810	ENSG00000178363			Calml3 (MGI:1917655)
chr10	5638856	5666594	10p15.1	10p15.1	615055	ASB13	Ankyrin repeat- and SOCS box-containing protein 13	ASB13	79754	ENSG00000196372			Asb13 (MGI:2145525)
chr10	5765221	5813548	10p15	10p15.1	600767	GDI2, RABGDIB	GDP dissociation inhibitor 2	GDI2	2665	ENSG00000057608	pseudogene on chr.7		Gdi2 (MGI:99845)
chr10	5889571	5937594	10p15.1	10p15.1	607222	FBXO18, FBH1, FBX18	F-box only protein 18	FBH1	84893	ENSG00000134452			Fbxo18 (MGI:1354699)
chr10	5948896	5978740	10p15-p14	10p15.1	601070	IL15RA	Interleukin-15 receptor, alpha	IL15RA	3601	ENSG00000134470			Il15ra (MGI:104644)
chr10	6010693	6062369	10p15.1	10p15.1	147730	IL2RA, CD25, IL2R, IDDM10, IMD41	Interleukin-2 receptor, alpha	IL2RA	3559	ENSG00000134460		{Diabetes, mellitus, insulin-dependent, susceptibility to, 10}, 601942 (3); Immunodeficiency 41 with lymphoproliferation and autoimmunity, 606367 (3), Autosomal recessive	Il2ra (MGI:96549)
chr10	6088985	6117458	10p15.1	10p15.1	606935	RBM17, SPF45	RNA binding motif protein 17	RBM17	84991	ENSG00000134453			Rbm17 (MGI:1924188)
chr10	6144877	6254647	10p15-p14	10p15.1	605319	PFKFB3, IPFK2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3	PFKFB3	5209	ENSG00000170525			Pfkfb3 (MGI:2181202)
chr10	6393037	6580645	10p15	10p15.1	600448	PRKCQ	Protein kinase C, theta	PRKCQ	5588	ENSG00000065675			Prkcq (MGI:97601)
chr10	6600000	29300000	10p14-p12		604401	ARVD6	Arrhythmogenic right ventricular dysplasia 6		27038			Arrhythmogenic right ventricular dysplasia 6, 604401 (2)	
chr10	6600000	12200000	10p14		612230	CRCS5	Colorectal cancer, susceptibility to, 5		100188887		associated with rs10795668	{Colorectal cancer, susceptibility to, 5}, 612230 (2)	
chr10	6600000	17300000	10p14-p13		601362	DGCR2, DGS2	DiGeorge syndrome chromosome region-2		8026			DiGeorge syndrome/velocardiofacial syndrome complex-2, 601362 (2)	
chr10	7158623	7411485	10p14	10p14	615392	SFMBT2, KIAA1617	SCM-like protein with 4 MBT domains 2	SFMBT2	57713	ENSG00000198879			Sfmbt2 (MGI:2447794)
chr10	7559269	7666997	10p15	10p14	609783	ITIH5	Inter-alpha-trypsin inhibitor, heavy chain 5	ITIH5	80760	ENSG00000123243			Itih5 (MGI:1925751)
chr10	7703272	7749519	10p15	10p14	146640	ITIH2	Inter-alpha (globulin) inhibitor, H2 polypeptide	ITIH2	3698	ENSG00000151655			Itih2 (MGI:96619)
chr10	7750961	7788026	10p15-p14	10p14	601720	KIN, KIN17, BTCD	Antigenic determinant of recombination protein A, mouse, homolog of	KIN	22944	ENSG00000151657			Kin (MGI:96676)
chr10	7788103	7807800	10p15.1	10p14	108729	ATP5C1, ATP5CL1, ATP5C	ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide-1	ATP5F1C	509	ENSG00000165629			Atp5c1 (MGI:1261437)
chr10	7818503	8016630	10p14	10p14	606576	TAF3, TAFII140	TAF3 RNA polymerase II, TATA box-binding protein-associated factor, 140kD	TAF3	83860	ENSG00000165632			Taf3 (MGI:2388097)
chr10	8045419	8075200	10p15	10p14	131320	GATA3, HDR, HDRS	GATA-binding protein-3	GATA3	2625	ENSG00000107485		Hypoparathyroidism, sensorineural deafness, and renal dysplasia, 146255 (3), Autosomal dominant	Gata3 (MGI:95663)
chr10	10462514	11336674	10p13	10p14	602538	CELF2, CUGBP2, ETR3, BRUNOL3	CUGbp- and ELAV-like family, member 2	CELF2	10659	ENSG00000048740			Celf2 (MGI:1338822)
chr10	11460509	11611788	10p13	10p14	605405	USP6NL, RNTRE	USP6 N-terminal-like	USP6NL	9712	ENSG00000148429			Usp6nl (MGI:2138893)
chr10	11920021	12043169	10p15-p13	10p14	605529	UPF2, RENT2	UPF2 regulator of nonsense transcripts, yeast, homolog of	UPF2	26019	ENSG00000151461			Upf2 (MGI:2449307)
chr10	12068916	12123227	10p14	10p14	614984	DHTKD1, KIAA1630, AMOXAD, CMT2Q	Dehydrogenase E1 and transketolase domains-containing protein 1	DHTKD1	55526	ENSG00000181192	mutation identified in 1 CMT2Q family	2-aminoadipic 2-oxoadipic aciduria, 204750 (3), Autosomal recessive; ?Charcot-Marie-Tooth disease, axonal, type 2Q, 615025 (3), Autosomal dominant	Dhtkd1 (MGI:2445096)
chr10	12195961	12250589	10p14-p13	10p14-p13	617708	CDC123	Cell division cycle 123	CDC123	8872	ENSG00000151465			Cdc123 (MGI:2138811)
chr10	12200000	17300000	10p13		606187	AD7	Alzheimer disease 7		114475		max LOD at D10S1423	Alzheimer disease-7, 606187 (2)	
chr10	12200000	17300000	10p13		609888	LPRS	Leprosy, paucibacillary type, susceptibility to		81861			{Leprosy, paucibacillary type, susceptibility to}, 609888 (2)	
chr10	12349513	12835544	10p13	10p13	607957	CAMK1D, CKLIK	Calcium/calmodulin-dependent protein kinase I-delta	CAMK1D	57118	ENSG00000183049			Camk1d (MGI:2442190)
chr10	13100081	13138275	10p15-p14	10p13	602432	OPTN, GLC1E, FIP2, HYPL, NRP, ALS12	Optineurin	OPTN	10133	ENSG00000123240		Amyotrophic lateral sclerosis 12, 613435 (3); Glaucoma 1, open angle, E, 137760 (3), Autosomal dominant; {Glaucoma, normal tension, susceptibility to}, 606657 (3)	Optn (MGI:1918898)
chr10	13161553	13211109	10p13	10p13	609357	MCM10, CNA43	Minichromosome maintenance 10, S. cerevisiae, homolog of	MCM10	55388	ENSG00000065328			Mcm10 (MGI:1917274)
chr10	13277795	13300129	10pter-p11.2	10p13	602026	PHYH, PAHX	Phytanoyl-CoA hydroxylase	PHYH	5264	ENSG00000107537		Refsum disease, 266500 (3), Autosomal recessive	Phyh (MGI:891978)
chr10	13317427	13348297	10p13	10p13	600902	SEPHS1, SPS1	Selenophosphate synthetase 1	SEPHS1	22929	ENSG00000086475			Sephs1 (MGI:1923580)
chr10	13586810	13645343	10p13	10p13	604993	PRPF18, PRP18	Prp18, S. cerevisiae, homolog of	PRPF18	8559	ENSG00000165630			Prpf18 (MGI:1914479)
chr10	13638299	14330883	10p13	10p13	616305	FRMD4A, KIAA1294, CCAFCA	FERM domain-containing protein 4A	FRMD4A	55691	ENSG00000151474	mutation identified in 1 CCAFCA family	?Corpus callosum, agenesis of, with facial anomalies and cerebellar ataxia, 616819 (3), Autosomal recessive	Frmd4a (MGI:1919850)
chr10	14819244	14838072	10p13	10p13	611233	ARMETL1, CDNF	Arginine-rich protein mutated in early stage tumors-like 1	CDNF	441549	ENSG00000185267			Cdnf (MGI:3606576)
chr10	14838159	14871740	10p12.3	10p13	610369	HSPA14, HSP70L1	Heat-shock 70kD protein 14	HSPA14	51182	ENSG00000187522			Hspa14 (MGI:1354164)
chr10	14878782	14904314	10p13	10p13	606503	SUV39H2, FLJ23414	Suppressor of variegation 3-9, Drosophila, homolog of, 2	SUV39H2	79723	ENSG00000152455			Suv39h2 (MGI:1890396)
chr10	14897563	14954431	10p	10p13	605988	DCLRE1C, ARTEMIS, SCIDA	DNA cross-link repair protein 1C	DCLRE1C	64421	ENSG00000152457		Omenn syndrome, 603554 (3), Autosomal recessive; Severe combined immunodeficiency, Athabascan type, 602450 (3), Autosomal recessive	Dclre1c (MGI:2441769)
chr10	14954227	14988049	10p13	10p13	614174	MEIG1	Meiosis-expressed gene 1, mouse, homolog of	MEIG1	644890	ENSG00000197889			Meig1 (MGI:1202878)
chr10	15097179	15104256	10p13	10p13	606116	RPP38	Ribonuclease P, 38-kD subunit	RPP38	10557	ENSG00000152464			Rpp38 (MGI:2443607)
chr10	15104587	15168709	10p13	10p13	603801	NMT2	N-myristoyltransferase 2	NMT2	9397	ENSG00000152465			Nmt2 (MGI:1202298)
chr10	15513948	15720334	10p13	10p13	604063	ITGA8, RHDA1	Integrin, alpha-8	ITGA8	8516	ENSG00000077943		Renal hypodysplasia/aplasia 1, 191830 (3), Autosomal recessive	Itga8 (MGI:109442)
chr10	15778168	15860532	10p13	10p13	611649	MINDY3, C10orf97, CARP	MINDY lysine-48 deubiquitinase 3	MINDY3	80013	ENSG00000148481			Mindy3 (MGI:1914210)
chr10	16436942	16517961	10p12	10p13	604446	PTER	Phosphotriesterase-related protein	PTER	9317	ENSG00000165983			Pter (MGI:107372)
chr10	16513742	16522004	10p13	10p13	615227	C1QL3, CTRP13, K100	Complement component 1, q subcomponent-like 3	C1QL3	389941	ENSG00000165985			C1ql3 (MGI:2387350)
chr10	16590615	16817453	10p13	10p13	179555	RSU1	Ras suppressor protein 1	RSU1	6251	ENSG00000148484			Rsu1 (MGI:103040)
chr10	16823965	17130491	10p12.1	10p13	602997	CUBN, IFCR, MGA1	Cubilin (intrinsic factor-cobalamin receptor)	CUBN	8029	ENSG00000107611		Megaloblastic anemia-1, Finnish type, 261100 (3), Autosomal recessive	Cubn (MGI:1931256)
chr10	17137335	17202070	10p15.1	10p13	602478	TRDMT1, DMNT2	tRNA aspartic acid methyltransferase 1 (DNA methyltransferase 2)	TRDMT1	1787	ENSG00000107614			Trdmt1 (MGI:1274787)
chr10	17228209	17237596	10p13	10p13	193060	VIM, CTRCT30	Vimentin	VIM	7431	ENSG00000026025		Cataract 30, pulverulent, 116300 (3), Autosomal dominant	Vim (MGI:98932)
chr10	17315413	17455965	10p12.31	10p12.33	610139	ST8SIA6, SIAT8F	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 6	ST8SIA6	338596	ENSG00000148488			St8sia6 (MGI:2386797)
chr10	17589958	17617373	10p12.33	10p12.33	610467	HACD1, PTPLA	3-hydroxyacyl-CoA dehydratase 1	HACD1	9200	ENSG00000165996			Hacd1 (MGI:1353592)
chr10	17644124	17716823	10p14-p13	10p12.33	601899	STAM	Signal transducing adaptor molecule	STAM	8027	ENSG00000136738			Stam (MGI:1329014)
chr10	17809342	17911161	10p13	10p12.33	153618	MRC1, MMR	Mannose receptor, C type 1	MRC1	4360	ENSG00000260314			Mrc1 (MGI:97142)
chr10	18140559	18545880	10p12	10p12.33-p12.31	600003	CACNB2	Calcium channel, voltage-dependent, beta 2 subunit	CACNB2	783	ENSG00000165995		Brugada syndrome 4, 611876 (3)	Cacnb2 (MGI:894644)
chr10	18512581	18659263	10p12.31	10p12.31	617199	NSUN6	NOP2/SUN RNA methyltransferase family, member 6	NSUN6	221078	ENSG00000241058			Nsun6 (MGI:1921705)
chr10	18659334	18681638	10p12.31	10p12.31	608909	ARL5B, ARL8	ADP-ribosylation factor-like 5B	ARL5B	221079	ENSG00000165997			Arl5b (MGI:1923119)
chr10	19046930	19734477	10p12.31	10p12.31	617715	MALRD1, C10orf112, DIET1	MAM and LDL receptor class A domain-containing protein 1	MALRD1	340895	ENSG00000204740			Malrd1 (MGI:1928271)
chr10	19816214	20289855	10p12.3	10p12.31	606827	PLXDC2, TEM7R	Plexin domain containing 2	PLXDC2	84898	ENSG00000120594			Plxdc2 (MGI:1914698)
chr10	20779972	21174186	10p13-p12	10p12.31	605491	NEBL	Nebulette	NEBL	10529	ENSG00000078114			
chr10	21496561	21496640	10p12.31	10p12.31	615202	MIR1915	Micro RNA 1915	MIR1915	100302129				
chr10	21524615	21743629	10p12	10p12.31	602409	AF10	ALL1 fused gene from chromosome 10	MLLT10	8028	ENSG00000078403	fuses with MLL and HEAB	Leukemia, acute myeloid, 601626 (3), Autosomal dominant	Mllt10 (MGI:1329038)
chr10	21756547	22003762	10p12.31	10p12.31	611207	DNAJC1, HTJ1	DNAJ/HSP40 homolog, subfamily C, member 1	DNAJC1	64215	ENSG00000136770			Dnajc1 (MGI:103268)
chr10	22208813	22209982	10p12.3	10p12.31	613249	EBLN1	Endogenous Borna-like N element-containing protein 1	EBLN1	340900	ENSG00000223601			
chr10	22316382	22320316	10p12.2	10p12.2	616700	COMMD3	COMM domain-containing protein 3	COMMD3	23412	ENSG00000148444			Commd3 (MGI:88218)
chr10	22321209	22331484	10p13	10p12.2	164831	BMI1	Oncogene BMI-1	BMI1	648	ENSG00000168283			
chr10	22345444	22417609	10p12-p11.2	10p12.2	605730	SPAG6	Sperm-associated antigen 6	SPAG6	9576	ENSG00000077327			Spag6l (MGI:1354388)
chr10	22534836	22714573	10p12.2	10p12.2	603140	PIP4K2A, PI5P4KA, PIP5K2A	Phosphatidylinositol 5-phosphate 4-kinase, type II, alpha	PIP4K2A	5305	ENSG00000150867			Pip4k2a (MGI:1298206)
chr10	22928023	23038526	10p12.23	10p12.2	611226	ARMC3	Armadillo repeat-containing protein 3	ARMC3	219681	ENSG00000165309			Armc3 (MGI:1918132)
chr10	23095497	23122012	10p12	10p12.2	613782	MSRB2, CBS1	Methionine sulfoxide reductase B2	MSRB2	22921	ENSG00000148450			Msrb2 (MGI:1923717)
chr10	23192530	23194251	10p12.3	10p12.2	607194	PTF1A, PACA, PAGEN2	Pancreas transcription factor 1, alpha subunit	PTF1A	256297	ENSG00000168267		Pancreatic agenesis 2, 615935 (3), Autosomal recessive; Pancreatic and cerebellar agenesis, 609069 (3), Autosomal recessive	Ptf1a (MGI:1328312)
chr10	23439268	23442380	10p12.2	10p12.2	612022	OTUD1, DUBA7	OTU domain-containing protein 1	OTUD1	220213	ENSG00000165312			Otud1 (MGI:1918448)
chr10	23694726	24547847	10p12.2	10p12.2-p12.1	617367	KIAA1217, SKT	KIAA1217 gene	KIAA1217	56243	ENSG00000120549			Etl4 (MGI:95454)
chr10	24583608	24725420	10p12.3	10p12.1	609870	ARHGAP21, KIAA1424	GTPase-activating protein, Rho, 21	ARHGAP21	57584	ENSG00000107863	pseudogene on chr.6		Arhgap21 (MGI:1918685)
chr10	24848606	24952643	10p12.1	10p12.1	610751	PRTFDC1	Phosphoribosyl transferase domain-containing protein 1	PRTFDC1	56952	ENSG00000099256			
chr10	24952318	25026663	10p12.1	10p12.1	611260	THNSL1, TSH1	Threonine synthase-like 1	THNSL1	79896	ENSG00000185875			Thnsl1 (MGI:2139347)
chr10	24981978	25062278	10p12.1	10p12.1	611025	ENKUR, C10orf63	Enkurin, TRPC channel-interacting protein	ENKUR	219670	ENSG00000151023			Enkur (MGI:1918483)
chr10	25174736	25602228	10p12.1	10p12.1	614573	GPR158, KIAA1136	G protein-coupled receptor 158	GPR158	57512	ENSG00000151025			Gpr158 (MGI:2441697)
chr10	25934072	26212535	10p11.1	10p12.1	606808	MYO3A, DFNB30	Myosin IIIA	MYO3A	53904	ENSG00000095777		Deafness, autosomal recessive 30, 607101 (3), Autosomal recessive	Myo3a (MGI:2183924)
chr10	26216306	26304561	10p11.23	10p12.1	138275	GAD2	Glutamate decarboxylase-2, pancreas	GAD2	2572	ENSG00000136750			Gad2 (MGI:95634)
chr10	26697423	26747245	10p12.1	10p12.1	607429	PDSS1, TPT, COQ1, COQ10D2	Prenyl diphosphate synthase, subunit 1	PDSS1	23590	ENSG00000148459		Coenzyme Q10 deficiency, primary, 2, 614651 (3), Autosomal recessive	Pdss1 (MGI:1889278)
chr10	26746595	26861086	10p11.2	10p12.1	603050	ABI1	ABL-interactor 1	ABI1	10006	ENSG00000136754			Abi1 (MGI:104913)
chr10	26938194	27100497	10p12.1	10p12.1	610855	ANKRD26, KIAA1074, THC2	Ankyrin repeat domain-containing protein 26	ANKRD26	22852	ENSG00000107890		Thrombocytopenia 2, 188000 (3), Autosomal dominant	Ankrd26 (MGI:1917887)
chr10	27110110	27155050	10p14	10p12.1	607472	YME1L1, YME1L, PAMP, OPA11	Mitochondrial escape 1-like 1	YME1L1	10730	ENSG00000136758	mutation identified in1 OPA11 family	?Optic atrophy 11, 617302 (3), Autosomal recessive	Yme1l1 (MGI:1351651)
chr10	27154478	27187952	10p12.1	10p12.1	608221	MASTL, FLJ14813, GWL	Microtubule-associated serine/threonine kinase-like	MASTL	84930	ENSG00000120539			Mastl (MGI:1914371)
chr10	27182837	27243541	10p12.1	10p12.1	616618	ACBD5, KIAA1996	Acyl-CoA-binding domain-containing protein 5	ACBD5	91452	ENSG00000107897			Acbd5 (MGI:1921409)
chr10	27398187	27414367	10p12.1	10p12.1	611791	PTCHD3	Patched domain-containing protein 3	PTCHD3	374308	ENSG00000182077			Ptchd3 (MGI:1921925)
chr10	27504173	27542236	10p12.1	10p12.1	602207	RAB18, WARBM3	Ras-associated protein RAB18	RAB18	22931	ENSG00000099246		Warburg micro syndrome 3, 614222 (3), Autosomal recessive	Rab18 (MGI:102790)
chr10	27672873	27745848	10p12.1	10p12.1	601332	MKX, IFRX, IRXL1	Mohawk homeobox	MKX	283078	ENSG00000150051			Mkx (MGI:2687286)
chr10	27812163	27999499	10p12.1	10p12.1	615408	ARMC4, CILD23	Armadillo repeat-containing protein 4	ARMC4	55130	ENSG00000169126		Ciliary dyskinesia, primary, 23, 615451 (3), Autosomal recessive	Armc4 (MGI:1922184)
chr10	28050992	28303065	10p12.1	10p12.1	610973	MPP7	Membrane protein, palmitoylated 7	MPP7	143098	ENSG00000150054			Mpp7 (MGI:1922989)
chr10	28532587	28623111	10p12.1-p11.2	10p12.1	615049	WAC, KIAA1844, DESSH	WW domain-containing adaptor with coiled-coil region	WAC	51322	ENSG00000095787		Desanto-Shinawi syndrome, 616708 (3), Autosomal dominant	Wac (MGI:2387357)
chr10	28677494	28682938	10p12.3-p11.2	10p12.1	604444	BAMBI, NMA	BMP and activin membrane-bound inhibitor, xenopus, homolog of	BAMBI	25805	ENSG00000095739			Bambi (MGI:1915260)
chr10	29300000	59400000	10p11.23-q21.1		607239	DFNB33	Deafness, autosomal recessive 33	DFNB33	170508		prev. assignment to chr. 9 an error	Deafness, autosomal recessive 33, 607239 (2), Autosomal recessive	
chr10	29457337	29737000	10p11.2	10p11.23	604126	SVIL	Supervillin	SVIL	6840	ENSG00000197321			Svil (MGI:2147319)
chr10	30012799	30115493	10p11	10p11.23	614398	KIAA1462, JCAD	KIAA1462 gene	JCAD	57608	ENSG00000165757			Jcad (MGI:2685174)
chr10	30309800	30349337	10p11.23	10p11.23	613669	MTPAP, PAPD1, SPAX4	Mitochondrial poly(A) polymerase	MTPAP	55149	ENSG00000107951	mutation identified in 1 SPAX4 family	?Spastic ataxia 4, autosomal recessive, 613672 (3), Autosomal recessive	Mtpap (MGI:1914690)
chr10	30434020	30461832	10p11.2	10p11.23	191195	MAP3K8, COT, EST, TPL2	Mitogen-activated protein kinase kinase kinase 8 (cancer Osaka thyroid oncogene)	MAP3K8	1326	ENSG00000107968		Lung cancer, somatic, 211980 (3)	Map3k8 (MGI:1346878)
chr10	30606221	30629760	10p11.23	10p11.23	612748	LYZL2	Lysozyme-like 2	LYZL2	119180	ENSG00000151033			
chr10	31100000	34200000	10p11.22		611934	EIG5	Epilepsy, idiopathic generalized, susceptibility to, 5		100188861		max lod at D10S1426	{Epilepsy, idiopathic generalized, susceptibility to, 5}, 611934 (2)	
chr10	31307716	31320446	10p11.22	10p11.22	616915	ZEB1AS1	ZEB1 antisense RNA 1, noncoding	ZEB1-AS1	220930				
chr10	31318494	31529813	10p11.2	10p11.22	189909	ZEB1, TCF8, NIL2A, PPCD3, FECD6	Zinc finger E box-binding homeobox 1	ZEB1	6935	ENSG00000148516		Corneal dystrophy, Fuchs endothelial, 6, 613270 (3); Corneal dystrophy, posterior polymorphous, 3, 609141 (3)	Zeb1 (MGI:1344313)
chr10	31805397	31928875	10p12	10p11.22	610577	ARHGAP12	Rho GTPase-activating protein 12	ARHGAP12	94134	ENSG00000165322			Arhgap12 (MGI:1922665)
chr10	32009009	32056442	10p11.22	10p11.22	602809	KIF5B, KNS1, UKHC	Kinesin 1	KIF5B	3799	ENSG00000170759			Kif5b (MGI:1098268)
chr10	32267715	32378797	10p11	10p11.22	610999	EPC1	Enhancer of polycomb, Drosophila, homolog of, 1	EPC1	80314	ENSG00000120616			Epc1 (MGI:1278322)
chr10	32900317	32958364	10p11.2	10p11.22	135630	ITGB1, FNRB	Integrin, beta-1 (fibronectin receptor, beta polypeptide; antigen CD29 includes MDF2, MSK12)	ITGB1	3688	ENSG00000150093	pseudogene FNRBL on 19p		Itgb1 (MGI:96610)
chr10	33177490	33334904	10p12	10p11.22	602069	NRP1, NRP, VEGF165R	Neuropilin 1	NRP1	8829	ENSG00000099250			Nrp1 (MGI:106206)
chr10	34109559	34815324	10p11.21	10p11.22-p11.21	606745	PARD3, PAR3	Partitioning-defective protein 3, C. elegans, homolog of	PARD3	56288	ENSG00000148498			Pard3 (MGI:2135608)
chr10	34200000	59400000	10p11.21-q21.1		614990	USH1K	Usher syndrome, type IK	USH1K	101180907		max lod at D10S539	Usher syndrome, type IK, 614990 (2), Autosomal recessive	
chr10	35008550	35126898	10p11.2-p11.1	10p11.21	603135	CUL2	Cullin 2	CUL2	8453	ENSG00000108094			Cul2 (MGI:1918995)
chr10	35126829	35212957	10p12.1-p11.2	10p11.21	123812	CREM	cAMP-responsive element modulator	CREM	1390	ENSG00000095794			Crem (MGI:88495)
chr10	35246980	35572669	10p11.2	10p11.21	612786	CCNY, CFP1, CCNX, C10orf9	Cyclin Y	CCNY	219771	ENSG00000108100			Ccny (MGI:1915224)
chr10	35605409	35608934	10p11.21	10p11.21	611922	GJD4, CX40.1	Gap junction protein, delta-4	GJD4	219770	ENSG00000177291			Gjd4 (MGI:2444990)
chr10	35638248	35641433	10p11.2	10p11.21	606146	FZD8	Frizzled, Drosophila, homolog of, 8	FZD8	8325	ENSG00000177283			Fzd8 (MGI:108460)
chr10	37125753	37309297	10p11.21	10p11.21	610856	ANKRD30A	Ankyrin repeat domain-containing protein 30A	ANKRD30A	91074	ENSG00000148513			
chr10	37949571	37976654	10p11.2-q11.2	10p11.21	194528	ZNF25, KOX19	Zinc finger protein-25 (KOX 19)	ZNF25	219749	ENSG00000175395			Zfp9 (MGI:99210)
chr10	38010482	38067833	10q11.2	10p11.1	194521	ZNF33A, NF11A, KOX2	Zinc finger protein-33a	ZNF33A	7581	ENSG00000189180			
chr10	38094326	38150292	10p11.1	10p11.1	616085	ZNF37A, KOX21, ZNF37	Zinc finger protein 37A	ZNF37A	7587	ENSG00000075407			
chr10	39800000	133797422	10q		608176	AITD4	Autoimmune thyroid disease, susceptibility to, 4		387581			{Autoimmune thyroid disease, susceptibility to, 4}, 608176 (2)	
chr10	41600000	68800000	10q11.2-q21		610926	STHAG5	Tooth agenesis, selective, 5		100188748		D10S604 and D10S568	Tooth agenesis, selective, 5, 610926 (2)	
chr10	42574168	42638836	10q11.2	10q11.21	194522	ZNF33B, ZNF11B, KOX2	Zinc finger protein-33b	ZNF33B	7582	ENSG00000196693			
chr10	42782505	42834936	10q11.21	10q11.21	611448	BMS1, BMS1L, KIAA0187, ACC	Bms1, ribosome assembly protein, S. cerevisiae, homolog of	BMS1	9790	ENSG00000165733	mutation identified in one ACC family	?Aplasia cutis congenita, nonsyndromic, 107600 (3), Autosomal dominant	Bms1 (MGI:2446132)
chr10	43077026	43130350	10q11.2	10q11.21	164761	RET, MEN2A, HSCR1	RET transforming sequence; oncogene RET	RET	5979	ENSG00000165731		Central hypoventilation syndrome, congenital, 209880 (3), Autosomal dominant; {Hirschsprung disease, susceptibility to, 1}, 142623 (3), Autosomal dominant; Medullary thyroid carcinoma, 155240 (3), Autosomal dominant; Multiple endocrine neoplasia IIA, 171400 (3), Autosomal dominant; Multiple endocrine neoplasia IIB, 162300 (3), Autosomal dominant; Pheochromocytoma, 171300 (3), Autosomal dominant	Ret (MGI:97902)
chr10	43138444	43185307	10q11.22	10q11.21	616616	CSGALNACT2	Chondroitin sulfate N-acetylgalactosaminyltransferase 2	CSGALNACT2	55454	ENSG00000169826			Csgalnact2 (MGI:1926002)
chr10	43194532	43266918	10q11.21	10q11.21	614531	RASFEF1A	RASGEF domain family, member 1A	RASGEF1A	221002	ENSG00000198915			Rasgef1a (MGI:1917977)
chr10	43371643	43376334	10q11.21	10q11.21	616926	FXYD4, CHIF	FXYD domain-containing ion transport regulator 4	FXYD4	53828	ENSG00000150201			Fxyd4 (MGI:1889005)
chr10	43385616	43409247	10q11.21-q11.22	10q11.21	601037	HNRPF	Heterogeneous nuclear ribonucleoprotein F	HNRNPF	3185	ENSG00000169813			Hnrnpf (MGI:2138741)
chr10	43554515	43574618	10q11.2	10q11.21	601069	ZNF239, MOK2	Zinc finger protein-239	ZNF239	8187	ENSG00000196793	previously 19q13.2-q13.3		Zfp239 (MGI:1306812)
chr10	43643858	43648877	10q23-q24	10q11.21	194539	ZNF32, KOX30	Zinc finger protein-32 (KOX30)	ZNF32	7580	ENSG00000169740			Zfp637 (MGI:2448537)
chr10	44292087	44385096	10q11.1	10q11.21	600835	CXCL12, SDF1	Chemokine, C-X-C motif, ligand 12 (stromal cell-derived factor 1)	CXCL12	6387	ENSG00000107562		{AIDS, resistance to}, 609423 (3)	Cxcl12 (MGI:103556)
chr10	44959752	44994723	10q11.21	10q11.21	610559	RASSF4, AD037	Ras association domain family, member 4	RASSF4	83937	ENSG00000107551			Rassf4 (MGI:2386853)
chr10	44976260	44978881	10q11.21	10q11.21	611309	C10orf10, DEPP, FIG	Chromosome 10 open reading frame 10	DEPP1	11067	ENSG00000165507			8430408G22Rik (MGI:1918730)
chr10	45000824	45005328	10q11.2	10q11.21	194529	ZNF22, KOX15	Zinc finger protein-22 (KOX15)	ZNF22	7570	ENSG00000165512			Zfp422 (MGI:1914505)
chr10	45374165	45446120	10q11.2	10q11.21	152390	ALOX5	Arachidonate 5-lipoxygenase	ALOX5	240	ENSG00000012779		{Asthma, diminished response to antileukotriene treatment in}, 600807 (3), Autosomal dominant; {Atherosclerosis, susceptibility to} (3)	Alox5 (MGI:87999)
chr10	45454584	45594905	10q11.21	10q11.21-q11.22	613335	MARCH8	Membrane-associated RING-CH finger protein 8	MARCH8	220972	ENSG00000165406			March8 (MGI:1919029)
chr10	45727199	45792963	10q11.22	10q11.22	613631	WASHC2C, FAM21C, VPEF, KIAA0592	WASH complex, subunit 2C	WASHC2C	253725	ENSG00000172661			Washc2 (MGI:106463)
chr10	45972452	46003741	10q11.21-q11.23	10q11.22	605034	TIMM23	Translocase of inner mitochondrial membrane 23, Yeast, homolog of	TIMM23	100287932	ENSG00000265354			Timm23 (MGI:1858317)
chr10	46005087	46030713	10q11.2	10q11.22	601984	NCOA4, ELE1, PTC3	Nuclear receptor coactivator 4	NCOA4	8031	ENSG00000266412	fused with RET to form PTC3		Ncoa4 (MGI:1350932)
chr10	46033304	46046268	10q11.2	10q11.22	157145	MSMB, HPC13	Microseminoprotein, beta	MSMB	4477	ENSG00000263639		{Prostate cancer, hereditary, 13}, 611928 (3)	Msmb (MGI:97166)
chr10	46458547	46470693	10q11.2-q21.2	10q11.22	601790	PPYR1, NPY4R, PP1	Pancreatic polypeptide receptor-1	NPY4R	5540	ENSG00000204174			
chr10	46543973	46557417	10q11.22	10q11.22	611240	GPRIN2, GRIN2	G protein-regulated inducer of neurite outgrowth 2	GPRIN2	9721	ENSG00000204175			Gprin2 (MGI:2444560)
chr10	46578017	46595169	10q11.1	10q11.22	608081	SYT15	Synaptotagmin 15	SYT15	83849	ENSG00000204176			Syt15 (MGI:2442166)
chr10	46911371	47003828	10q11.2	10q11.22	610630	PTPN20A	Protein tyrosine phosphatase, nonreceptor-type, 20A	PTPN20	26095	ENSG00000204179			Ptpn20 (MGI:1196295)
chr10	46911371	47003828	10q11.2	10q11.22	610631	PTPN20B	Protein tyrosine phosphatase, nonreceptor-type, 20B	PTPN20	26095	ENSG00000204179			
chr10	47300223	47313582	10q11.22	10q11.22	601361	GDF10, BMP3B	Growth/differentiation factor 10	GDF10	2662	ENSG00000266524			Gdf10 (MGI:95684)
chr10	47322489	47327587	10q11.22	10q11.22	605120	GDF2, BMP9, HHT5	Growth differentiation factor 2 (bone morphogenetic protein 9)	GDF2	2658	ENSG00000263761		Telangiectasia, hereditary hemorrhagic, type 5, 615506 (3), Autosomal dominant	Gdf2 (MGI:1321394)
chr10	47348370	47357874	10q11.2	10q11.22	180290	RBP3, RP66	Retinol-binding protein-3, interstitial	RBP3	5949	ENSG00000265203	1 family identified with mutation	?Retinitis pigmentosa 66, 615233 (3), Autosomal recessive	Rbp3 (MGI:97878)
chr10	47467992	47991878	10q11.2	10q11.22	602396	ANXA8	Annexin A8	ANXA8	653145	ENSG00000265190			Anxa8 (MGI:1201374)
chr10	48156558	48274897	10q11.22	10q11.22	613323	FRMPD2	FERM and PDZ domains-containing protein 2	FRMPD2	143162	ENSG00000170324			Frmpd2 (MGI:2685472)
chr10	48306638	48439359	10q11.2	10q11.22	601158	MAPK8, PRKM8, JNK1, SAPK1	Mitogen-activated protein kinase 8	MAPK8	5599	ENSG00000107643			Mapk8 (MGI:1346861)
chr10	48429830	48656264	10q11	10q11.22-q11.23	610585	ARHGAP22	Rho GTPase-activating protein 22	ARHGAP22	58504	ENSG00000128805			Arhgap22 (MGI:2443418)
chr10	48600000	51100000	10q11.23		610987	ASAH2C, ASAH2L	N-acylsphingosine amidohydrolase 2C						
chr10	48600000	80300000	10q11.23-q22.3		614237	HYPT9	Hypotrichosis 9		100736250		between D10S538 and D10S2327	Hypotrichosis 9, 614237 (2), Autosomal recessive	
chr10	48684815	48982955	10q11.22-q11.23	10q11.23	613316	WDFY4, KIAA1607	WD repeat- and FYVE domain-containing protein 4	WDFY4	57705	ENSG00000128815			Wdfy4 (MGI:3584510)
chr10	49364069	49396015	10q11.23	10q11.23	606701	DRGX, DRG11	Dorsal root ganglia homeobox	DRGX	644168	ENSG00000165606			
chr10	49454479	49539537	10q11	10q11.23	609413	ERCC6, CKN2, COFS1, CSB, ARMD5, UVSS1, POF11	Excision repair cross complementing rodent repair deficiency, complementation group 6	ERCC6	2074	ENSG00000225830		Cerebrooculofacioskeletal syndrome 1, 214150 (3), Autosomal recessive; Cockayne syndrome, type B, 133540 (3), Autosomal recessive; De Sanctis-Cacchione syndrome, 278800 (3), Autosomal recessive; {Lung cancer, susceptibility to}, 211980 (3), Autosomal recessive; {Macular degeneration, age-related, susceptibility to, 5}, 613761 (3); Premature ovarian failure 11, 616946 (3), Autosomal dominant; UV-sensitive syndrome 1, 600630 (3), Autosomal recessive	Ercc6 (MGI:1100494)
chr10	49609094	49665103	10q11.2	10q11.23	118490	CHAT, CMS6	Choline acetyltransferase	CHAT	1103	ENSG00000070748		Myasthenic syndrome, congenital, 6, presynaptic, 254210 (3), Autosomal recessive	Chat (MGI:88392)
chr10	49610300	49612719	10q11.2	10q11.23	600336	SLC18A3, VACHT, CMS21	Solute carrier family 18 (vesicular acetylcholine), member 3	SLC18A3	6572	ENSG00000187714		Myasthenic syndrome, congenital, 21, presynaptic, 617239 (3), Autosomal recessive	Slc18a3 (MGI:1101061)
chr10	49734640	49762378	10q11.23	10q11.23	617513	OGDHL, KIAA1290	Oxoglutarate dehydrogenase-like protein	OGDHL	55753	ENSG00000197444			Ogdhl (MGI:3616088)
chr10	49818273	49942026	10q11.23	10q11.23	603501	PARG	Poly(ADP-ribose) glycohydrolase	PARG	8505	ENSG00000227345			Parg (MGI:1347094)
chr10	50184860	50251563	10q11.23	10q11.23	611202	ASAH2	N-acylsphingosine amidohydrolase 2	ASAH2	56624	ENSG00000188611			Asah2 (MGI:1859310)
chr10	50305584	50623976	10q11.2	10q11.23	611573	SGMS1, SMS1, TMEM23, MOB	Sphingomyelin synthase 1	SGMS1	259230	ENSG00000198964			Sgms1 (MGI:2444110)
chr10	50991150	52298349	10q11.2	10q11.2-q21.1	176894	PRKG1, PRKG1B, PRKGR1B, AAT8	Protein kinase, cGMP-dependent, regulatory, type I	PRKG1	5592	ENSG00000185532		Aortic aneurysm, familial thoracic 8, 615436 (3), Autosomal dominant	Prkg1 (MGI:108174)
chr10	51100000	68800000	10q21		613065	ALL1	Leukemia, acute lymphocytic, susceptibility to, 1		100310785		associated with rs10821936	{Leukemia, acute lymphocytic, susceptibility to, 1}, 613065 (2)	
chr10	51100000	68800000	10q21		612369	ALPQTL4	Alkaline phosphatase, plasma level of, QTL 4		100196916		linkage with rs12355784	{Alkaline phosphatase, plasma level of, QTL4}, 612369 (2)	
chr10	51100000	68800000	10q21		612255	IBD15	Inflammatory bowel disease 15		100190929		association with rs10761659	{Inflammatory bowel disease 15}, 612255 (2)	
chr10	51100000	68800000	10q21		612357	MAFD8	Major affective disorder 8		100196912		associated with rs20994336	{Major affective disorder-8, susceptibility to}, 612357 (2)	
chr10	51100000	59400000	10q21.1		612717	MYP15	Myopia 15	MYP15	100294716		max lod at D10S1643	Myopia 15, 612717 (2), Autosomal dominant	
chr10	51695485	51699594	10q22-q23	10q21.1	611968	CSTF2T, KIAA0689	Cleavage stimulation factor, 3-prime pre-RNA, subunit 2, 64kD, tau variant	CSTF2T	23283	ENSG00000177613			Cstf2t (MGI:1932622)
chr10	52314182	52317656	10q11.2	10q21.1	605189	DKK1	Dickkopf, Xenopus, homolog of, 1	DKK1	22943	ENSG00000107984			Dkk1 (MGI:1329040)
chr10	52764976	52772846	10q11.2-q21	10q21.1	154545	MBL2, MBL, MBP1, MBL2D, MBPD	Mannose-binding lectin 2, soluble (opsonic defect)	MBL2	4153	ENSG00000165471	near MEN2A	{Chronic infections, due to MBL deficiency}, 614372 (3), Autosomal dominant	Mbl2 (MGI:96924)
chr10	53802770	55629181	10q21-q22	10q21.1	605514	PCDH15, DFNB23, USH1F	Protocadherin 15	PCDH15	65217	ENSG00000150275		Deafness, autosomal recessive 23, 609533 (3), Autosomal recessive; Usher syndrome, type 1D/F digenic, 601067 (3), Autosomal recessive, Digenic recessive; Usher syndrome, type 1F, 602083 (3), Autosomal recessive	Pcdh15 (MGI:1891428)
chr10	56357437	56361272	10q21-q22	10q21.1	609177	ZWINT, SIP30	ZW10 interacting kinetochore protein	ZWINT	11130	ENSG00000122952			Zwint (MGI:1289227)
chr10	58191516	58269960	10q21	10q21.1	609851	IPMK	Inositol polyphosphate multikinase	IPMK	253430	ENSG00000151151			Ipmk (MGI:1916968)
chr10	58269101	58289258	10q21.1	10q21.1	611932	CISD1, MITONEET	CDGSH iron sulfur domain protein 1	CISD1	55847	ENSG00000122873			Cisd1 (MGI:1261855)
chr10	58334978	58370752	10q11.2-q21	10q21.1	602961	UBE2D1, UBCH5A, UBCH5	Ubiquitin-conjugating enzyme E2D 1	UBE2D1	7321	ENSG00000072401			Ube2d1 (MGI:2384911)
chr10	58385142	58399229	10q21	10q21.1	600438	TFAM, TCF6L2, TCF6L1, TCF6L3, MTTF1, TCF6, MTDPS15	Transcription factor A, mitochondrial	TFAM	7019	ENSG00000108064	mutation identified in 1 MTDPS15 family	?Mitochondrial DNA depletion syndrome 15 (hepatocerebral type), 617156 (3), Autosomal recessive	Tfam (MGI:107810)
chr10	58512902	58831436	10q21.2	10q21.1	614295	BICC1, BICC, CYSRD	Bicaudal C, Drosophila, homolog of, 1	BICC1	80114	ENSG00000122870		{Renal dysplasia, cystic, susceptibility to}, 601331 (3), Autosomal dominant	Bicc1 (MGI:1933388)
chr10	59650763	59710078	10q21.2	10q21.2	614242	SLC16A9, MCT9	Solute carrier family 16 (monocarboxylic acid transporter), member 9	SLC16A9	220963	ENSG00000165449			Slc16a9 (MGI:1914109)
chr10	59736989	59753444	10q21.2	10q21.2	616246	MRLN, LINC00948	Myoregulin	MRLN	100507027	ENSG00000227877			
chr10	59788746	59906655	10q21	10q21.2	601985	CCDC6, D10S170, H4, TST1	Coiled-coil domain-containing 6	CCDC6	8030	ENSG00000108091	fused with RET to form PTC1		Ccdc6 (MGI:1923801)
chr10	60026297	60733525	10q21	10q21.2	600465	ANK3, MRT37	Ankyrin-3, node of Ranvier	ANK3	288	ENSG00000151150	mutation identified in 1 family	?Mental retardation, autosomal recessive, 37, 615493 (3), Autosomal recessive	Ank3 (MGI:88026)
chr10	60778330	60794851	10q21.1	10q21.2	116940	CDK1, CDC2	Cyclin-dependent kinase 1	CDK1	983	ENSG00000170312			Cdk1 (MGI:88351)
chr10	60869437	61001485	10q21.1	10q21.2	607351	RHOBTB1, KIAA0740	Rho-related BTB domain-containing protein 1	RHOBTB1	9886	ENSG00000072422			Rhobtb1 (MGI:1916538)
chr10	61406641	61453449	10q21.2	10q21.2	617803	TMEM26	Transmembrane protein 26	TMEM26	219623	ENSG00000196932			Tmem26 (MGI:2143537)
chr10	61901253	62096947	10q21.2	10q21.2	608538	ARID5B, MRF2, DESRT	AT-rich interaction domain-containing protein 5B	ARID5B	84159	ENSG00000150347			Arid5b (MGI:2175912)
chr10	62374156	62672010	10q21.2	10q21.2	607818	ZNF365, UAN	Zinc finger protein 365	ZNF365	22891	ENSG00000138311		{Nephrolithiasis, uric acid, susceptibility to}, 605990 (3)	Zfp365 (MGI:2143676)
chr10	62800000	73100000	10q21.3-q22.1		604185	HCFP2	Facial paresis, hereditary congenital, 2	MBS3	22811			Facial paresis, hereditary congenital, 2, 604185 (2), Autosomal dominant	
chr10	62800000	80300000	10q21.3-q22.3		613339	HWE1	Epilepsy, hot water, 1		100415903		max lod at D10S412	Epilepsy, hot water, 1, 613339 (2), Autosomal dominant	
chr10	62800000	68800000	10q21.3		614996	MSE	Myelinating Schwann cell element		101180900				
chr10	62804755	62808478	10q21.3	10q21.3	611392	ADO, C10orf22	2-aminoethanethiol dioxygenase	ADO	84890	ENSG00000181915			Ado (MGI:2685083)
chr10	62811995	62819166	10q21.1-q22.1	10q21.3	129010	EGR2, KROX20	KROX-20, Drosophila, homolog of (early growth response-2)	EGR2	1959	ENSG00000122877		Charcot-Marie-Tooth disease, type 1D, 607678 (3), Autosomal dominant; Dejerine-Sottas disease, 145900 (3), Autosomal recessive, Autosomal dominant; Neuropathy, congenital hypomyelinating, 1, 605253 (3), Autosomal recessive, Autosomal dominant	Egr2 (MGI:95296)
chr10	63133246	63155030	10q21.3	10q21.3	616477	NRBF2, COPR	Nuclear receptor-binding factor 2	NRBF2	29982	ENSG00000148572			Nrbf2 (MGI:1354950)
chr10	63167220	63522074	10q21.3	10q21.3	604503	JMJD1C, TRIP8, KIAA1380	Jumonji domain-containing protein 1C	JMJD1C	221037	ENSG00000171988			Jmjd1c (MGI:1918614)
chr10	63521352	63625122	10q21.3	10q21.3	609348	REEP3, C10orf74	Receptor expression-enhancing protein 3	REEP3	221035	ENSG00000165476			Reep3 (MGI:88930)
chr10	65912517	67696216	10q21	10q21.3	607667	CTNNA3, ARVD13	Catenin, alpha-3	CTNNA3	29119	ENSG00000183230		Arrhythmogenic right ventricular dysplasia, familial, 13, 615616 (3), Autosomal dominant	Ctnna3 (MGI:2661445)
chr10	66926033	67101550	10q21.3	10q21.3	610869	LRRTM3	Leucine-rich repeat transmembrane protein 3	LRRTM3	347731	ENSG00000198739			Lrrtm3 (MGI:2389177)
chr10	67796664	67838186	10q21.1	10q21.3	606060	DNAJC12, JDP1, HPANBH4	DNAJ/HSP40 homolog, subfamily C, member 12	DNAJC12	56521	ENSG00000108176		Hyperphenylalaninemia, mild, non-BH4-deficient, 617384 (3), Autosomal recessive	Dnajc12 (MGI:1353428)
chr10	67884668	67918389	10q21.3	10q21.3	604479	SIRT1, SIR2L1	Sirtuin, S. cerevisiae, homolog 1	SIRT1	23411	ENSG00000096717			Sirt1 (MGI:2135607)
chr10	68087906	68212016	10q21.1	10q21.3	608517	MYPN, CMD1DD, CMH22, RCM4, NEM11	Myopalladin	MYPN	84665	ENSG00000138347		Cardiomyopathy, dilated, 1KK, 615248 (3), Autosomal dominant; Cardiomyopathy, familial restrictive, 4, 615248 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 22, 615248 (3), Autosomal dominant; Nemaline myopathy 11, autosomal recessive, 617336 (3), Autosomal recessive	Mypn (MGI:1916052)
chr10	68230594	68232112	10q21.3-q22.1	10q21.3	609875	ATOH7, PHPVAR, NCRNA	Atonal, Drosophila, homolog of, 7	ATOH7	220202	ENSG00000179774		Persistent hyperplastic primary vitreous, autosomal recessive, 221900 (3), Autosomal recessive	Atoh7 (MGI:1355553)
chr10	68282659	68332957	10q21.1	10q21.3	612189	PBLD, MAWBP, MAWDBP	Phenazine biosynthesis-like protein domain-containing protein	PBLD	64081	ENSG00000108187			Pbld1 (MGI:1915621)
chr10	68331692	68343195	10q22	10q21.3	602324	HNRPH3, 2H9	Heterogeneous nuclear ribonucleoprotein H3	HNRNPH3	3189	ENSG00000096746			Hnrnph3 (MGI:1926462)
chr10	68341106	68407301	10q21.1	10q21.3	610328	RUFY2, KIAA1537	RUN and FYVE domains-containing protein 2	RUFY2	55680	ENSG00000204130			Rufy2 (MGI:1917682)
chr10	68414063	68472520	10q21.3-q22.1	10q21.3	601810	DNA2, DNA2L, KIAA0083, PEOA6, SCKL8	DNA replication helicase 2, yeast, homolog of	DNA2	1763	ENSG00000138346	mutation identified in 1 SCKL8 family	Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 6, 615156 (3), Autosomal dominant; ?Seckel syndrome 8, 615807 (3), Autosomal recessive	Dna2 (MGI:2443732)
chr10	68482332	68527522	10q21.3-q22.1	10q21.3	139080	SLC25A16, D10S105E, GDA	Solute carrier family 25 (mitochondrial carrier), member 16 (Graves disease autoantigen)	SLC25A16	8034	ENSG00000122912			Slc25a16 (MGI:1920382)
chr10	68560359	68700793	10q22	10q21.3	607790	TET1, CXXC6, LCX, KIAA1676	tet oncogene 1	TET1	80312	ENSG00000138336			Tet1 (MGI:1098693)
chr10	68721143	68792376	10q21.3	10q21.3	612569	CCAR1, CARP1	Cell division cycle and apoptosis regulator 1	CCAR1	55749	ENSG00000060339			Ccar1 (MGI:1914750)
chr10	68800000	104000000	10q22-q24		608583	ATFB1	Atrial fibrillation, familial, 1		406216			Atrial fibrillation, familial, 1, 608583 (2), Autosomal dominant	
chr10	68800000	95300000	10q22-q23		611706	MGR12	Migraine, with or without aura, susceptibility to, 12		100188851		max lod at 100cM	{Migraine, with or without aura, susceptibility to, 12}, 611706 (2), Autosomal dominant	
chr10	68800000	97500000	10q22.1-q24.1		609041	SPG27	Spastic paraplegia-27, autosomal recessive	SPG27	414886		between  D10S606 and D10S1758	Spastic paraplegia 27, autosomal recessive, 609041 (2), Autosomal recessive	
chr10	68800000	80300000	10q22		611003	SQTL1	Smoking as a quantitative trait locus 1		100188827		near D10S1432	{Smoking as a quantitative trait locus 1}, 611003 (2)	
chr10	68827536	68895941	10q22.1	10q22.1	609397	STOX1, PEE4	Storkhead box 1	STOX1	219736	ENSG00000165730		Preeclampsia/eclampsia 4, 609404 (3)	Stox1 (MGI:2684909)
chr10	68898816	68956311	10q22.1	10q22.1	610373	DDX50, GUB	DEAD/H box 50	DDX50	79009	ENSG00000107625			Ddx50 (MGI:2182303)
chr10	68956122	68985068	10q21	10q22.1	606357	DDX21	DEAD/H box 21	DDX21	9188	ENSG00000165732			Ddx21 (MGI:1860494)
chr10	68988720	69016982	10q22.1	10q22.1	609367	KIAA1279	KIAA1279 gene	KIF1BP	26128	ENSG00000198954		Goldberg-Shprintzen megacolon syndrome, 609460 (3), Autosomal recessive	Kif1bp (MGI:1919570)
chr10	69057532	69104810	10q22.1	10q22.1	177040	SRGN, PRG1, PRG	Serglycin	SRGN	5552	ENSG00000122862			
chr10	69124152	69174415	10q21.1	10q22.1	605506	VPS26A, VPS26, HB58	Vacuolar protein sorting 26, yeast, homolog of, A	VPS26A	9559	ENSG00000122958			Vps26a (MGI:1353654)
chr10	69180203	69209097	10q22.1	10q22.1	605122	SUPV3L1	Suv3-like 1	SUPV3L1	6832	ENSG00000156502			Supv3l1 (MGI:2441711)
chr10	69220302	69267558	10q22.1	10q22.1	617221	HKDC1	Hexokinase domain-containing protein 1	HKDC1	80201	ENSG00000156510			Hkdc1 (MGI:2384910)
chr10	69269990	69401881	10q22	10q22.1	142600	HK1, HKD, HMSNR, RP79	Hexokinase-1	HK1	3098	ENSG00000156515	10p11.2 conflicting assignment; ?2 loci on chr.10	Hemolytic anemia due to hexokinase deficiency, 235700 (3), Autosomal recessive; Neuropathy, hereditary motor and sensory, Russe type, 605285 (3), Autosomal recessive; Retinitis pigmentosa 79, 617460 (3), Autosomal dominant	Hk1 (MGI:96103)
chr10	69404201	69416917	10q11-q21	10q22.1	162321	TACR2, TAC2R, NKNAR	Tachykinin receptor 2 (substance K receptor; neurokinin 2 receptor)	TACR2	6865	ENSG00000075073			Tacr2 (MGI:98477)
chr10	69451463	69549507	10q22.1	10q22.1	613140	TSPAN15, NET7	Tetraspanin 15	TSPAN15	23555	ENSG00000099282			Tspan15 (MGI:1917673)
chr10	69571439	69573453	10q21.3	10q22.1	604882	NEUROG3, NGN3, ATOH5	Neurogenin 3	NEUROG3	50674	ENSG00000122859		Diarrhea 4, malabsorptive, congenital, 610370 (3), Autosomal recessive	Neurog3 (MGI:893591)
chr10	69801834	69959147	10q22	10q22.1	120350	COL13A1, CMS19	Collagen XIII, alpha-1 polypeptide	COL13A1	1305	ENSG00000197467	~550kb proximal to P4HA	Myasthenic syndrome, congenital, 19, 616720 (3), Autosomal recessive	Col13a1 (MGI:1277201)
chr10	70052600	70112283	10q22.3	10q22.1	616141	H2AFY2	H2A histone family, member Y2	H2AFY2	55506	ENSG00000099284			H2afy2 (MGI:3037658)
chr10	70137980	70146739	10q22.1	10q22.1	611017	TYSND1	Trypsin domain-containing protein 1	TYSND1	219743	ENSG00000156521			Tysnd1 (MGI:1919017)
chr10	70150203	70170528	10q22.1	10q22.1	607691	SARA1, SAR1A	Sar1a, S. cerevisiae, homolog 1	SAR1A	56681	ENSG00000079332			Sar1a (MGI:98230)
chr10	70202829	70233433	10q21.3	10q22.1	179030	PP	Inorganic pyrophosphatase	PPA1	5464	ENSG00000180817			Ppa1 (MGI:97831)
chr10	70254956	70283693	10q21	10q22.1	607448	NPFF1	Neuropeptide FF1	NPFFR1	64106	ENSG00000148734			Npffr1 (MGI:2685082)
chr10	70404104	70428617	10q21-q22	10q22.1	602224	EIF4EBP2, 4EBP2	Eukaryotic translation initiation factor-4E binding protein-1	EIF4EBP2	1979	ENSG00000148730			Eif4ebp2 (MGI:109198)
chr10	70431935	70447947	10q22.1	10q22.1	601265	NODAL, HTX5	Nodal, mouse, homolog of	NODAL	4838	ENSG00000156574		Heterotaxy, visceral, 5, 270100 (3), Autosomal dominant	Nodal (MGI:97359)
chr10	70458541	70568449	10q22.1	10q22.1	614656	KIAA1274, PALD	Paladin, mouse, homolog of	PALD1	27143	ENSG00000107719			Pald1 (MGI:1351623)
chr10	70597347	70602787	10q22	10q22.1	170280	PRF1, HPLH2, FLH2	Perforin	PRF1	5551	ENSG00000180644	mistakenly assigned to chr.17	Aplastic anemia, 609135 (3); Hemophagocytic lymphohistiocytosis, familial, 2, 603553 (3), Autosomal recessive; Lymphoma, non-Hodgkin, 605027 (3)	Prf1 (MGI:97551)
chr10	70672505	70762440	10q22.1	10q22.1	607506	ADAMTS14	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 14	ADAMTS14	140766	ENSG00000138316			Adamts14 (MGI:2179942)
chr10	70771236	70785418	10q22.1	10q22.1	612640	C10orf27	chromosome 10 open reading frame 27	TBATA	219793	ENSG00000166220			Tbata (MGI:1923820)
chr10	70815919	70881188	10q22.1	10q22.1	603729	SGPL1, SPL, NPHS14	Sphingosine-1-phosphate lyase 1	SGPL1	8879	ENSG00000166224		Nephrotic syndrome 14, 617575 (3), Autosomal recessive	Sgpl1 (MGI:1261415)
chr10	70882279	70888785	10q22	10q22.1	126090	PCBD1, DCOH	Pterin-4a-carbinolamine dehydratase 1	PCBD1	5092	ENSG00000166228		Hyperphenylalaninemia, BH4-deficient, D, 264070 (3), Autosomal recessive	Pcbd1 (MGI:94873)
chr10	71212534	71302878	10q21-q22	10q22.1	607870	UNC5B, UNC5H2	Unc5, C. elegans, homolog of, B	UNC5B	219699	ENSG00000107731			Unc5b (MGI:894703)
chr10	71319252	71363389	10q22.1	10q22.1	612373	SLC29A3, ENT3, PHID, HCLAP	Solute carrier family 29 (nucleoside transporter), member 3	SLC29A3	55315	ENSG00000198246		Histiocytosis-lymphadenopathy plus syndrome, 602782 (3), Autosomal recessive	Slc29a3 (MGI:1918529)
chr10	71396933	71815946	10q21-q22	10q22.1	605516	CDH23, USH1D, DFNB12, PITA5	Cadherin-23 (otocadherin)	CDH23	64072	ENSG00000107736	between D10S529 and D10S573	Deafness, autosomal recessive 12, 601386 (3), Autosomal recessive; {Pituitary adenoma 5, multiple types}, 617540 (3), Autosomal dominant; Usher syndrome, type 1D, 601067 (3), Autosomal recessive, Digenic recessive; Usher syndrome, type 1D/F digenic, 601067 (3), Autosomal recessive, Digenic recessive	Cdh23 (MGI:1890219)
chr10	71747555	71773579	10q22.1	10q22.1	615608	C10orf54, B7H5	Chromosome 10 open reading frame 54	VSIR	64115	ENSG00000107738			Vsir (MGI:1921298)
chr10	71816282	71851374	10q22.1	10q22.1	176801	PSAP, SAP1	Prosaposin (sphingolipid activator protein-1)	PSAP	5660	ENSG00000197746		Combined SAP deficiency, 611721 (3), Autosomal recessive; Gaucher disease, atypical, 610539 (3); Krabbe disease, atypical, 611722 (3), Autosomal recessive; Metachromatic leukodystrophy due to SAP-b deficiency, 249900 (3), Autosomal recessive	Psap (MGI:97783)
chr10	71964361	72013563	10q22.1	10q22.1	603799	CHST3, C6ST, C6ST1, HSD	Carbohydrate sulfotransferase 3	CHST3	9469	ENSG00000122863		Spondyloepiphyseal dysplasia with congenital joint dislocations, 143095 (3), Autosomal recessive	Chst3 (MGI:1858224)
chr10	72059033	72095312	10q21-q23	10q22.1	607988	SPOCK2, KIAA0275	SPARC/osteonectin, CWCV, and KAZAL-like domains proteoglycan 2	SPOCK2	9806	ENSG00000107742			Spock2 (MGI:1891351)
chr10	72096031	72218776	10q22.1	10q22.1	614215	ASCC1, p50, SMABF2	Activating signal cointegrator 1 complex, subunit 1	ASCC1	51008	ENSG00000138303	mutation identified in 1 SMABF2 family	Barrett esophagus/esophageal adenocarcinoma, 614266 (3); ?Spinal muscular atrophy with congenital bone fractures 2, 616867 (3), Autosomal recessive	Ascc1 (MGI:1916340)
chr10	72215999	72235859	10q22.1	10q22.1	613427	ANAPC16, MSAG, C10orf104	Anaphase-promoting complex, subunit 16	ANAPC16	119504	ENSG00000166295			Anapc16 (MGI:1289325)
chr10	72273918	72276035	10q24.33	10q22.1	607729	DDIT4, REDD1, RTP801	DNA damage-inducible transcript 4	DDIT4	54541	ENSG00000168209			Ddit4 (MGI:1921997)
chr10	72332829	72355148	10q22.2	10q22.1	608376	DNAJB12, DJ10, FLJ0027	DNAJ, E. coli, homolog of, subfamily B, member 12	DNAJB12	54788	ENSG00000148719			Dnajb12 (MGI:1931881)
chr10	72367325	72626190	10q22.1	10q22.1	605084	MICU1, CBARA1, MPXPS	Mitochondrial calcium uptake protein 1	MICU1	10367	ENSG00000107745		Myopathy with extrapyramidal signs, 615673 (3), Autosomal recessive	Micu1 (MGI:2384909)
chr10	72692130	72887693	10q22.1	10q22.1	614197	MCU, CCDC109A	Mitochondrial calcium uniporter	MCU	90550	ENSG00000156026			Mcu (MGI:3026965)
chr10	72893555	72933035	10q21.3	10q22.1	609330	OIT3, LZP	Oncoprotein-induced transcript 3, mouse, homolog of	OIT3	170392	ENSG00000138315			Oit3 (MGI:1201782)
chr10	72934761	72955043	10q22.1	10q22.1	611653	PLA2G12B, GXIIB	Phospholipase A2, group XIIB	PLA2G12B	84647	ENSG00000138308			Pla2g12b (MGI:1917086)
chr10	73007216	73096973	10q21.3-q23.1	10q22.1	176710	P4HA1, P4HA	Procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide 1	P4HA1	5033	ENSG00000122884			P4ha1 (MGI:97463)
chr10	73134523	73168094	10q22.2	10q22.2	616464	ECD, SGT1	Ecdysoneless, Drosophila, homolog of	ECD	11319	ENSG00000122882			Ecd (MGI:1917851)
chr10	73241953	73247330	10q22.2	10q22.2	611206	DNAJC9, JDD1, KIAA0974	DNAJ/HSP40 homolog, subfamily C, member 9	DNAJC9	23234	ENSG00000213551			Dnajc9 (MGI:1915326)
chr10	73248842	73252692	10q22.1	10q22.2	609204	MRPS16, COXPD2	Mitochondrial ribosomal protein S16	MRPS16	51021	ENSG00000182180		Combined oxidative phosphorylation deficiency 2, 610498 (3), Autosomal recessive	Mrps16 (MGI:1913492)
chr10	73375100	73414084	10q21.1-q21.2	10q22.2	186360	ANXA7, SNX	Annexin A7 (synexin)	ANXA7	310	ENSG00000138279			Anxa7 (MGI:88031)
chr10	73423578	73433560	10q22.2	10q22.2	614773	MSS51, ZMYND17	MSS51 mitochondrial translational activator, S. cerevisiae, homolog of	MSS51	118490	ENSG00000166343			Mss51 (MGI:1922093)
chr10	73436427	73496023	10q21-q22	10q22.2	114106	PPP3CB, CALNB	Protein phosphatase-3 (formerly 2B), catalytic subunit, beta isoform (calcineurin A beta)	PPP3CB	5532	ENSG00000107758			Ppp3cb (MGI:107163)
chr10	73631611	73641756	10q22.1	10q22.2	605603	MYOZ1	Myozenin 1 (calsarcin 2)	MYOZ1	58529	ENSG00000177791			Myoz1 (MGI:1929471)
chr10	73744163	73772174	10q22.2	10q22.2	607185	SEC24C, KIAA0079	Sec24-related gene family, member C	SEC24C	9632	ENSG00000176986			Sec24c (MGI:1919746)
chr10	73801910	73811848	10q22	10q22.2	603268	NDST2	N-deacetylase/N-sulfotransferase 2	NDST2	8509	ENSG00000166507	in intron of PCDH15		Ndst2 (MGI:97040)
chr10	73812500	73874590	10q22	10q22.2	602123	CAMK2G, CAMKG	Calcium/calmodulin-dependent protein kinase (CaM kinase) II gamma	CAMK2G	818	ENSG00000148660	in intron of PCDH15		Camk2g (MGI:88259)
chr10	73909181	73917500	10q24	10q22.2	191840	PLAU, URK, QPD, BDPLT5	Plasminogen activator, urokinase	PLAU	5328	ENSG00000122861	proximal to HOX11	{Alzheimer disease, late-onset, susceptibility to}, 104300 (3), Autosomal dominant; Quebec platelet disorder, 601709 (3), Autosomal dominant	Plau (MGI:97611)
chr10	73998113	74120159	10q22.1-q23	10q22.2	193065	VCL, CMD1W, CMH15	Vinculin	VCL	7414	ENSG00000035403		Cardiomyopathy, dilated, 1W, 611407 (3); Cardiomyopathy, hypertrophic, 15, 613255 (3), Autosomal dominant	Vcl (MGI:98927)
chr10	74120011	74151084	10q22.2	10q22.2	610366	AP3M1	Adaptor-related protein complex 3, mu-1 subunit	AP3M1	26985	ENSG00000185009			Ap3m1 (MGI:1929212)
chr10	74151184	74709302	10q11-q24	10q22.2	102750	ADK	Adenosine kinase	ADK	132	ENSG00000156110		Hypermethioninemia due to adenosine kinase deficiency, 614300 (3), Autosomal recessive	Adk (MGI:87930)
chr10	74824926	75032622	10q22	10q22.2	605880	KAT6B, MYST4, MORF, GTPTS	Lysine acetyltransferase 6B	KAT6B	23522	ENSG00000156650		Genitopatellar syndrome, 606170 (3), Autosomal dominant; SBBYSS syndrome, 603736 (3), Autosomal dominant	
chr10	75094431	75109220	10q22.2	10q22.2	613191	DUSP13, TMDP, MDSP	Dual-specificity phosphatase 13	DUSP13	51207	ENSG00000079393			Dusp13 (MGI:1351599)
chr10	75099574	75182122	10q22.2	10q22.2	611575	SAMD8, SMSR	Sterile alpha motif domain-containing 8	SAMD8	142891	ENSG00000156671			Samd8 (MGI:1914880)
chr10	75210153	75231447	10q22	10q22.2	193245	VDAC2	Voltage-dependent anion channel 2	VDAC2	7417	ENSG00000165637			Vdac2 (MGI:106915)
chr10	75279725	75401893	10q22.2	10q22.2	613902	ZNF503, NOLZ1	Zinc finger protein 503	ZNF503	84858	ENSG00000165655			Zfp503 (MGI:1353644)
chr10	75431645	76557374	10q22.3	10q22.2-q22.3	614537	C10orf11, OCA7	Chromosome 10 open reading frame 11	LRMDA	83938	ENSG00000148655		Albinism, oculocutaneous, type VII, 615179 (3), Autosomal recessive	Lrmda (MGI:1923883)
chr10	75900000	80300000	10q22.3		608078	SCZD11	Schizophrenia susceptibility locus, chromosome 10q-related		404686		between D10S1677 and D10S1753	{Schizophrenia}, 181500 (2), Autosomal dominant	
chr10	75900000	80300000	10q22.3		607965	SLEN1	Systemic lupus erythematosus with nephritis, susceptibility to, 1	SLEN1	192677			{Systemic lupus erythematosus with nephritis, susceptibility to, 1}, 607965 (2)	
chr10	75900000	80300000	10q22.3		612388	SS3	Sarcoidosis, susceptibility to, 3		100196919		associated with rs2789679 and rs1049550	{Sarcoidosis, susceptibility to, 3}, 612388 (2)	
chr10	76869600	77637968	10q22.3	10q22.3	600150	KCNMA1, SLO, PNKD3, CADEDS	Potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (slowpoke, Drosophila, homolog of)	KCNMA1	3778	ENSG00000156113	mutation identified in 1 CADEDS family	?Cerebellar atrophy, developmental delay, and seizures, 617643 (3), Autosomal recessive; Paroxysmal nonkinesigenic dyskinesia, 3, with or without generalized epilepsy, 609446 (3), Autosomal dominant	Kcnma1 (MGI:99923)
chr10	77790786	77926589	10q23	10q22.3	604090	DLG5, PDLG, KIAA0583	Discs large, Drosophila, homolog of, 5	DLG5	9231	ENSG00000151208			Dlg5 (MGI:1918478)
chr10	77975148	78029539	10q22.3	10q22.3	614258	POLR3A, RPC1, RPC155, ADDH, HLD7	Polymerase III, RNA, subunit A	POLR3A	11128	ENSG00000148606		Leukodystrophy, hypomyelinating, 7, with or without oligodontia and/or hypogonadotropic hypogonadism, 607694 (3), Autosomal recessive	Polr3a (MGI:2681836)
chr10	78033759	78056812	10q22-q23	10q22.3	602412	RPS24, DBA3	Ribosomal protein S24	RPS24	6229	ENSG00000138326		Diamond-blackfan anemia 3, 610629 (3), Autosomal dominant	Rps24 (MGI:98147)
chr10	79068993	79316527	10q22.1-q22.3	10q22.3	607159	RAI17, KIAA1224, ZIMP10	Retinoic acid-induced gene 17	ZMIZ1	57178	ENSG00000108175			Zmiz1 (MGI:3040693)
chr10	79347463	79355333	10q22-q23	10q22.3	604486	PPIF, CYP3	Peptidylprolyl-cis-trans-isomerase, mitochondrial	PPIF	10105	ENSG00000108179			Ppif (MGI:2145814)
chr10	79555851	79560460	10q22-q23	10q22.3	178642	SFTPA2, SPA2, COLEC5	Surfactant, pulmonary-associated protein A2	SFTPA2	729238	ENSG00000185303	contiguous with SFTPA1	Pulmonary fibrosis, idiopathic, 178500 (3), Autosomal dominant	
chr10	79610938	79615442	10q22.2-q23.1	10q22.3	178630	SFTPA1, SFTP1	Surfactant, pulmonary-associated protein A1	SFTPA1	653509	ENSG00000122852	contiguous with SFTPA2		Sftpa1 (MGI:109518)
chr10	79937739	79982235	10q23.3	10q22.3	178635	SFTPD, SFTP4	Surfactant, pulmonary-associated protein D	SFTPD	6441	ENSG00000133661			Sftpd (MGI:109515)
chr10	80131682	80145063	10q22.3	10q22.3	612857	PLAC9	Placenta-specific gene 9	PLAC9	219348	ENSG00000189129			
chr10	80153952	80205676	10q22.3-q23.1	10q22.3	602572	ANXA11, ANX11, ALS23	Annexin A11 (annexin XI)	ANXA11	311	ENSG00000122359		Amytrophic lateral sclerosis 23, 617839 (3), Autosomal dominant	Anxa11 (MGI:108481)
chr10	80271819	80289677	10q22	10q22.3	610550	MAT1A, MATA1, SAMS1	Methionine adenosyltransferase I, alpha	MAT1A	4143	ENSG00000151224		Hypermethioninemia, persistent, autosomal dominant, due to methionine adenosyltransferase I/III deficiency, 250850 (3), Autosomal recessive, Autosomal dominant; Methionine adenosyltransferase deficiency, autosomal recessive, 250850 (3), Autosomal recessive, Autosomal dominant	Mat1a (MGI:88017)
chr10	80300000	104000000	10q23-q24		611920	CPROTQ	C-reactive protein QTL		100188860		max lod at D10S1239	[C-reactive protein QTL], 611920 (2)	
chr10	80300000	95300000	10q23		612242	DEL10q23, C10DELq23	Chromosome 10q22.3-q23.2 deletion syndrome					Chromosome 10q22.3-q23.2 deletion syndrome, 612242 (4)	
chr10	80300000	104000000	10q23-q24		612288	IBD20	Inflammatory bowel disease 20		100190788		associated with rs11190140	{Inflammatory bowel disease 20}, 612288 (2)	
chr10	80336012	80356786	10q23.1	10q23.1	615154	DYDC1	DPY30 domain-containing protein 1	DYDC1	143241	ENSG00000170788			Dydc1 (MGI:1916746)
chr10	80407828	80437114	10q23.1	10q23.1	617165	FAM213A, PAMM	Family with sequence similarity 213, member A	FAM213A	84293	ENSG00000122378			Fam213a (MGI:1917814)
chr10	81875189	82989978	10q22	10q23.1	605533	NRG3	Neuregulin 3	NRG3	10718	ENSG00000185737			Nrg3 (MGI:1097165)
chr10	84167227	84172075	10q23.1	10q23.1	617434	HOST2	Long noncoding RNA HOST2	CERNA2	642934				
chr10	84173763	84185293	10q23.1	10q23.1	617775	C10orf99, CSBF, AP57	Chromosome 10 open reading frame 99	C10orf99	387695	ENSG00000188373			
chr10	84194634	84219620	10q23.1	10q23.1	609502	CDHR1, PCDH21, PRCAD, CORD15, RP65	Cadherin-related family, member 1	CDHR1	92211	ENSG00000148600		Cone-rod dystrophy 15, 613660 (3), Autosomal recessive; Retinitis pigmentosa 65, 613660 (3), Autosomal recessive	Cdhr1 (MGI:2157782)
chr10	84231519	84241460	10q23.1	10q23.1	616103	LRIT1, PAL	Leucine-rich repeat, immunoglobulin-like, and transmembrane domains-containing protein 1	LRIT1	26103	ENSG00000148602	REc, A		Lrit1 (MGI:2385320)
chr10	84243740	84259187	10q23	10q23.1	600342	RGR, RP44	Retinal G protein coupled receptor	RGR	5995	ENSG00000148604		Retinitis pigmentosa 44, 613769 (3)	Rgr (MGI:1929473)
chr10	85599554	86366492	10q22	10q23.1-q23.2	610659	GRID1, KIAA1220	Glutamate receptor, inotropic, delta 1	GRID1	2894	ENSG00000182771			Grid1 (MGI:95812)
chr10	86264693	86264787	10q23.2	10q23.2	611190	MIR346	Micro RNA 346	MIR346	442911				
chr10	86435255	86521815	10q23.2	10q23.2	610754	WAPAL, KIAA0261, FOE, WAPL	Wings apart-like protein, Drosophila, homolog of	WAPL	23063	ENSG00000062650			Wapl (MGI:2675859)
chr10	86653494	86666459	10q23.2	10q23.2	606665	OPN4	Opsin 4	OPN4	94233	ENSG00000122375			Opn4 (MGI:1353425)
chr10	86664784	86736071	10q22.2-q23.3	10q23.2	605906	LDB3, ZASP, CYPHER, KIAA01613, MFM4, CMD1C, CMH24, LVNC3	LIM domain binding 3	LDB3	11155	ENSG00000122367		Cardiomyopathy, dilated, 1C, with or without LVNC, 601493 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 24, 601493 (3), Autosomal dominant; Left ventricular noncompaction 3, 601493 (3), Autosomal dominant; Myopathy, myofibrillar, 4, 609452 (3), Autosomal dominant	Ldb3 (MGI:1344412)
chr10	86755785	86927968	10q22.3	10q23.2	601299	BMPR1A, ACVRLK3, ALK3	Bone morphogenetic protein receptor, type IA	BMPR1A	657	ENSG00000107779		Juvenile polyposis syndrome, infantile form, 174900 (3), Autosomal dominant; Polyposis syndrome, hereditary mixed, 2, 610069 (3); Polyposis, juvenile intestinal, 174900 (3), Autosomal dominant	Bmpr1a (MGI:1338938)
chr10	86955800	86963259	10q23.2-q23.3	10q23.2	602998	SNCG, BCSG1	Synuclein, gamma (breast cancer-specific gene 1)	SNCG	6623	ENSG00000173267			Sncg (MGI:1298397)
chr10	87050201	87095046	10q23.3	10q23.2	138130	GLUD1	Glutamate dehydrogenase-1	GLUD1	2746	ENSG00000148672	pseudogene on Xq26-q28	Hyperinsulinism-hyperammonemia syndrome, 606762 (3), Autosomal dominant	Glud1 (MGI:95753)
chr10	87504465	87553460	10q23	10q23.2	605391	MINPP1, HIPER1	Multiple inositol polyphosphate phosphatase 1	MINPP1	9562	ENSG00000107789		Thyroid carcinoma, follicular, 188470 (3), Autosomal dominant	Minpp1 (MGI:1336159)
chr10	87659718	87747704	10q22-q24	10q23.2-q23.3	603005	PAPSS2, ATPSK2, BCYM4	3'-phosphoadenosine 5'-phosphosulfate synthase 2	PAPSS2	9060	ENSG00000198682		Brachyolmia 4 with mild epiphyseal and metaphyseal changes, 612847 (3), Autosomal recessive	Papss2 (MGI:1330223)
chr10	87700000	91100000	10q23.31		613006	IDDM24	Diabetes mellitus, insulin-dependent, 24		100303715		associated with rs10509540	{Diabetes mellitus, insulin-dependent, 24}, 613006 (2)	
chr10	87700000	95300000	10q23.3		609578	RCM2	Cardiomyopathy, familial restrictive, 2		619468		max lod at D10S1242	Cardiomyopathy, familial restrictive, 2, 609578 (2)	
chr10	87751511	87841358	10q23.31	10q23.31	614452	ATAD1, THORASE	ATPase family, AAA domain-containing, member 1	ATAD1	84896	ENSG00000138138			Atad1 (MGI:1915229)
chr10	87859160	87863436	10q23	10q23.31	612105	KLLN, CWS4	Killin	KLLN	100144748	ENSG00000227268		Cowden syndrome 4, 615107 (3)	
chr10	87863437	87971929	10q23.31	10q23.31	601728	PTEN, MMAC1, GLM2, CWS1	Phosphatase and tensin homolog (mutated in multiple advanced cancers 1)	PTEN	5728	ENSG00000171862		Bannayan-Riley-Ruvalcaba syndrome, 153480 (3), Autosomal dominant; Cowden syndrome 1, 158350 (3), Autosomal dominant; Endometrial carcinoma, somatic, 608089 (3); {Glioma susceptibility 2}, 613028 (3); Lhermitte-Duclos syndrome, 158350 (3), Autosomal dominant; Macrocephaly/autism syndrome, 605309 (3), Autosomal dominant; Malignant melanoma, somatic, 155600 (3); {Meningioma}, 607174 (3), Autosomal dominant; PTEN hamartoma tumor syndrome (3); {Prostate cancer, somatic}, 176807 (3); Squamous cell carcinoma, head and neck, somatic, 275355 (3); VATER association with macrocephaly and ventriculomegaly, 276950 (3), Autosomal recessive	Pten (MGI:109583)
chr10	88176051	88584479	10q23.33	10q23.31	609360	RNLS, C10orf59	Renalase	RNLS	55328	ENSG00000184719			Rnls (MGI:1915045)
chr10	88583276	88623160	10q23.31	10q23.31	613921	LIPJ, LIPL1	Lipase J	LIPJ	142910	ENSG00000204022			
chr10	88664388	88678814	10q23.31	10q23.31	601980	LIPF	Lipase F, gastric type	LIPF	8513	ENSG00000182333			Lipf (MGI:1914967)
chr10	88706224	88753091	10q23.31	10q23.31	613922	LIPK, LIPL2	Lipase family, member K	LIPK	643414	ENSG00000204021			Lipk (MGI:2679259)
chr10	88757225	88783661	10q23.31	10q23.31	613924	LIPN, LIPL4, ARCI8, LI4	Lipase family, member N	LIPN	643418	ENSG00000204020		Ichthyosis, congenital, autosomal recessive 8, 613943 (3), Autosomal recessive	Lipn (MGI:1917416)
chr10	88802729	88822021	10q23.31	10q23.31	613923	LIPM, LIPL3	Lipase family, member M	LIPM	340654	ENSG00000173239			Lipm (MGI:1926003)
chr10	88879367	88923501	10q23	10q23.31	612352	STAMBPL1, KIAA1373	STAM-binding protein-like 1	STAMBPL1	57559	ENSG00000138134			Stambpl1 (MGI:1923880)
chr10	88935073	88991396	10q22-q24	10q23.31	102620	ACTA2, ACTSA, AAT6, MYMY5	Actin, alpha-2, smooth muscle, aorta	ACTA2	59	ENSG00000107796		Aortic aneurysm, familial thoracic 6, 611788 (3), Autosomal dominant; Moyamoya disease 5, 614042 (3); Multisystemic smooth muscle dysfunction syndrome, 613834 (3), Autosomal dominant	Acta2 (MGI:87909)
chr10	88968428	89017060	10q24.1	10q23.31	134637	FAS, TNFRSF6, APT1, CD95, ALPS1A	Fas cell surface death receptor	FAS	355	ENSG00000026103		Autoimmune lymphoproliferative syndrome, type IA, 601859 (3), Autosomal dominant; {Autoimmune lymphoproliferative syndrome}, 601859 (3), Autosomal dominant; Squamous cell carcinoma, burn scar-related, somatic (3)	Fas (MGI:95484)
chr10	89205936	89207313	10q23	10q23.31	604551	CH25H	Cholesterol 25-hydroxylase	CH25H	9023	ENSG00000138135			Ch25h (MGI:1333869)
chr10	89213568	89252038	10q23.31	10q23.31	613497	LIPA, CESD	Lipase A, lysosomal acid, cholesterol esterase	LIPA	3988	ENSG00000107798	?close to GOT	Cholesteryl ester storage disease, 278000 (3), Autosomal recessive; Wolman disease, 278000 (3), Autosomal recessive	Lipa (MGI:96789)
chr10	89301948	89309275	10q23.3	10q23.31	147040	IFIT2, IFI54, G10P2	Interferon-induced protein with tetratricopeptide repeats 2	IFIT2	3433	ENSG00000119922			Ifit2 (MGI:99449)
chr10	89327818	89340967	10q23.3	10q23.31	604650	IFIT4	Interferon-induced protein with tetratricopeptide repeats 4	IFIT3	3437	ENSG00000119917			Ifit3b,Ifit3 (MGI:1101055,MGI:3698419)
chr10	89392545	89406486	10q23.3	10q23.31	147690	IFIT1, IFI56, G10P1, IFNAI1	Interferon-induced protein with tetratricopeptide repeats 1	IFIT1	3434	ENSG00000185745	10q25-q26 = conflicting site		Ifit1bl1,Ifit1bl2 (MGI:2148249,MGI:3650685)
chr10	89414567	89421001	10q23.31	10q23.31	616135	IFIT5, RI58, ISG58	Interferon-induced protein with tetratricopeptide repeats 5	IFIT5	24138	ENSG00000152778			
chr10	89430293	89536028	10q23.3	10q23.31	611910	SLC16A12, MCT12, CTRCT47	Solute carrier family 16 (monocarboxylic acid transporter), member 12	SLC16A12	387700	ENSG00000152779	mutation identified in 1 CTRCT47 family	Cataract 47, juvenile, with microcornea, 612018 (3), Autosomal dominant	Slc16a12 (MGI:2147716)
chr10	89579496	89645571	10q23	10q23.31	606160	PANK1	Pantothenate kinase 1	PANK1	53354	ENSG00000152782			Pank1 (MGI:1922985)
chr10	89592746	89592826	10q23.31	10q23.31	613189	MIR107, MIRN107	Micro RNA 107	MIR107	406901				
chr10	89701589	89774942	10q22-q24	10q23.31	605498	MPHOSPH1, MPP1	M-phase phosphoprotein 1	KIF20B	9585	ENSG00000138182			Kif20b (MGI:2444576)
chr10	90738692	90857913	10q21-q24	10q23.31	182137	HTR7	5-hydroxytryptamine (serotonin) receptor-7, adenylate cyclase-coupled	HTR7	3363	ENSG00000148680			Htr7 (MGI:99841)
chr10	90871951	90908554	10q23.31	10q23.31	606115	RPP30	Ribonuclease P, 30kD subunit	RPP30	10556	ENSG00000148688			Rpp30 (MGI:1859683)
chr10	90912099	90921274	10q23.31	10q23.31	609599	ANKRD1, CARP	Ankyrin repeat domain-containing protein 1	ANKRD1	27063	ENSG00000148677			Ankrd1 (MGI:1097717)
chr10	91162401	91284330	10q23.32	10q23.32	617407	PCGF5	Polycomb group ring finger protein 5	PCGF5	84333	ENSG00000180628			Pcgf5 (MGI:1923505)
chr10	91628440	91633100	10q23-q24	10q23.32	602999	PPP1R3C, PPP1R5	Phosphatase 1, regulatory subunit 3C	PPP1R3C	5507	ENSG00000119938			Ppp1r3c (MGI:1858229)
chr10	91923769	92030997	10q22-q23	10q23.32	605191	BTAF1, TAFII170, TAF172, MOT1	BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kD (Mot1, S. cerevisiae, homolog of)	BTAF1	9044	ENSG00000095564			Btaf1 (MGI:2147538)
chr10	92046691	92291498	10q23.3	10q23.32	610606	CPEB3, KIAA0940	Cytoplasmic polyadenylation element-binding protein 3	CPEB3	22849	ENSG00000107864			Cpeb3 (MGI:2443075)
chr10	92291162	92353963	10q23.3	10q23.32-q23.33	610637	MARCH5	Membrane-associated RING-CH finger protein 5	MARCH5	54708	ENSG00000198060			March5 (MGI:1915207)
chr10	92451683	92574094	10q23-q25	10q23.33	146680	IDE	Insulin-degrading enzyme	IDE	3416	ENSG00000119912			Ide (MGI:96412)
chr10	92593067	92655394	10q23.33	10q23.33	148760	KIF11, KNSL1, MCLMR	Kinesin family member 11	KIF11	3832	ENSG00000138160		Microcephaly with or without chorioretinopathy, lymphedema, or mental retardation, 152950 (3), Autosomal dominant	Kif11 (MGI:1098231)
chr10	92689923	92695650	10q24	10q23.33	604420	HHEX, PRHX, PRH	Hematopoietically expressed homeo box	HHEX	3087	ENSG00000152804			Hhex (MGI:96086)
chr10	92826830	93059493	10q23.33	10q23.33	609672	EXOC6, SEC15L1, SEC15L, SEC15	Exocyst complex component 6	EXOC6	54536	ENSG00000138190			Exoc6 (MGI:1351611)
chr10	93061263	93068696	10q23.3	10q23.33	608428	CYP26C1, FFDD4	Cytochrome P450, subfamily XXVIC, polypeptide 1	CYP26C1	340665	ENSG00000187553		Focal facial dermal dysplasia 4, 614974 (3), Autosomal recessive	Cyp26c1 (MGI:2679699)
chr10	93073474	93077883	10q23-q24	10q23.33	602239	CYP26A1	Cytochrome p450, subfamily XXVIA, polypeptide 1	CYP26A1	1592	ENSG00000095596			Cyp26a1 (MGI:1096359)
chr10	93306428	93482504	10q24	10q23.33	604603	MYOF, FER1L3	Myoferlin	MYOF	26509	ENSG00000138119			Myof (MGI:1919192)
chr10	93496611	93529093	10q23.33	10q23.33	610000	CEP55, MARCH	Centrosomal protein, 55kD	CEP55	55165	ENSG00000138180		Multinucleated neurons, anhydramnios, renal dysplasia, cerebellar hypoplasia, and hydranencephaly, 236500 (3), Autosomal recessive	Cep55 (MGI:1921357)
chr10	93566177	93590071	10q23.33	10q23.33	609044	FFAR4, O3FAR1, GPR120, PGR4, BMIQ10	Free fatty acid receptor 4	FFAR4	338557	ENSG00000186188		{Obesity, susceptibility to}, 607514 (3)	Ffar4 (MGI:2147577)
chr10	93591835	93601743	10q24	10q23.33	180250	RBP4, RDCCAS, MCOPCB10	Retinol-binding protein-4, interstitial	RBP4	5950	ENSG00000138207	just centromeric of CYP2C cluster	Microphthalmia, isolated, with coloboma 10, 616428 (3), Autosomal dominant; Retinal dystrophy, iris coloboma, and comedogenic acne syndrome, 615147 (3), Autosomal recessive	Rbp4 (MGI:97879)
chr10	93612587	93665672	10q24	10q23.33	600827	PDE6C, PDEA2, COD4	Phosphodiesterase-6C, cGMP-specific, cone, alpha prime	PDE6C	5146	ENSG00000095464		Cone dystrophy 4, 613093 (3), Autosomal recessive	Pde6c (MGI:105956)
chr10	93667882	93702958	10q23.33	10q23.33	608866	C10orf4, FRA10AC1, FRA10A	Chromosome 10 open reading frame 4	FRA10AC1	118924	ENSG00000148690			Fra10ac1 (MGI:1917817)
chr10	93757808	93798173	10q24	10q23.33	604619	LGI1, EPT, ETL1, ADLTE, ADPEAF	Leucine-rich gene, glioma-inactivated, 1	LGI1	9211	ENSG00000108231		Epilepsy, familial temporal lobe, 1, 600512 (3), Autosomal dominant	Lgi1 (MGI:1861691)
chr10	93893950	93914270	10q23.33	10q23.33	617167	SLC35G1, POST, TMEM20, C10orf60	Solute carrier family 35, member G1	SLC35G1	159371	ENSG00000176273			Slc35g1 (MGI:2444789)
chr10	93993988	94328391	10q23	10q23.33	608414	PLCE1, KIAA1516, NPHS3	Phospholipase C, epsilon-1	PLCE1	51196	ENSG00000138193		Nephrotic syndrome, type 3, 610725 (3), Autosomal recessive	Plce1 (MGI:1921305)
chr10	94314906	94362975	10q24	10q23.33	610769	NOC3L, FAD24	Nucleolar complex-associated 3, S. cerevisiae, homolog of	NOC3L	64318	ENSG00000173145			Noc3l (MGI:1932610)
chr10	94545766	94613904	10q23.3-q24.2	10q23.33	603946	HELLS, LSH, ICF4	Helicase, lymphoid-specific	HELLS	3070	ENSG00000119969		Immunodeficiency-centromeric instability-facial anomalies syndrome 4, 616911 (3), Autosomal recessive	Hells (MGI:106209)
chr10	94683493	94736189	10q23.33	10q23.33	601131	CYP2C18	Cytochrome P450, subfamily IIC, polypeptide 18	CYP2C18	1562	ENSG00000108242			Cyp2c55 (MGI:1919332)
chr10	94762680	94855550	10q24.1-q24.3	10q23.33	124020	CYP2C, CYP2C19	Cytochrome P450, subfamily IIC (mephenytoin 4'-hydroxylase)	CYP2C19	1557	ENSG00000165841	4 genes in order: cen-C18-C19-C9-C8-tel	Clopidogrel, impaired responsiveness to, 609535 (3), Autosomal recessive; Mephenytoin poor metabolizer, 609535 (3), Autosomal recessive; Omeprazole poor metabolizer, 609535 (3), Autosomal recessive; Proguanil poor metabolizer, 609535 (3), Autosomal recessive	
chr10	94938657	94989390	10q24	10q23.33	601130	CYP2C9	Cytochrome P450, subfamily IIC (mephenytoin 4-hydroxylase), polypeptide 9	CYP2C9	1559	ENSG00000138109		Tolbutamide poor metabolizer (3); Warfarin sensitivity, 122700 (3), Autosomal dominant	Cyp2c65,Cyp2c66 (MGI:1919553,MGI:1917138)
chr10	95036771	95069496	10q23.3	10q23.33	601129	CYP2C8	Cytochrome P450, subfamily IIc, polypeptide 8	CYP2C8	1558	ENSG00000138115		Rhabdomyolysis, cerivastatin-induced (3)	Cyp2c29,Cyp2c38,Cyp2c39 (MGI:103238,MGI:1306818,MGI:1306819)
chr10	95237567	95291147	10q26	10q23.33	605900	PDLIM1, CLP36, CLIM1	PDZ and LIM domain protein 1	PDLIM1	9124	ENSG00000107438			Pdlim1 (MGI:1860611)
chr10	95300000	104000000	10q24		605526	AD6	Alzheimer disease 6		64851			Alzheimer disease 6, 605526 (2)	
chr10	95300000	110100000	10q24.1-q25.1		606483	CMTDIA	Charcot-Marie-Tooth disease, dominant intermediate A		387574			Charcot-Marie-Tooth disease, dominant intermediate A, 606483 (2), Autosomal dominant	
chr10	95300000	104000000	10q24		246560	SHFM3, SHSF3, DUP10q24, C10DUPq24	Split-hand/foot malformation 3 (Chromosome 10q24 duplication syndrome)				contiguous gene duplication syndrome	Split-hand/foot malformation 3, gene duplication syndrome, 246560 (4), Autosomal dominant	
chr10	95311772	95561438	10q23.3-q24.1	10q24.1	605264	SORBS1, SH3D5, SH3P12, KIAA1296	Sorbin and SH3 domain containing 1	SORBS1	10580	ENSG00000095637			Sorbs1 (MGI:700014)
chr10	95605928	95656900	10q24.3	10q24.1	138250	ALDH18A1, PYCS, GSAS, ARCL3A, SPG9A, SPG9B, ADCL3	Aldehyde dehydrogenase 18 family, member A1 (1-pyrroline-5-carboxylate synthetase)	ALDH18A1	5832	ENSG00000059573	GOT1 and GSAS in same pathway	Cutis laxa, autosomal dominant 3, 616603 (3), Autosomal dominant; Cutis laxa, autosomal recessive, type IIIA, 219150 (3), Autosomal recessive, Isolated cases; Spastic paraplegia 9A, autosomal dominant, 601162 (3), Autosomal dominant; Spastic paraplegia 9B, autosomal recessive, 616586 (3), Autosomal recessive	Aldh18a1 (MGI:1888908)
chr10	95663395	95694142	10q24.1	10q24.1	613847	TCTN3, TECT3, C10orf61, OFD4, JBTS18	Tectonic family, member 3	TCTN3	26123	ENSG00000119977		Joubert syndrome 18, 614815 (3), Autosomal recessive; Orofaciodigital syndrome IV, 258860 (3), Autosomal recessive	Tctn3 (MGI:1914840)
chr10	95710900	95877265	10q24	10q24.1	601752	ENTPD1, CD39, SPG64	Ectonucleoside triphosphate diphosphohydrolase 1 (CD39 antigen)	ENTPD1	953	ENSG00000138185		Spastic paraplegia 64, autosomal recessive, 615683 (3), Autosomal recessive	Entpd1 (MGI:102805)
chr10	96128905	96205290	10q24.1	10q24.1	617733	ZNF518A, KIAA0335	Zinc finger protein 518A	ZNF518A	9849	ENSG00000177853			Zfp518a (MGI:1919922)
chr10	96189170	96271575	10q23.2	10q24.1	604515	BLNK, SLP65, AGM4	B-cell linker protein (SH2 domain-containing leukocyte protein, 65kD)	BLNK	29760	ENSG00000095585	mutation identified in 1 AGM4 family	?Agammaglobulinemia 4, 613502 (3), Autosomal recessive	Blnk (MGI:96878)
chr10	96304327	96338563	10q23-q24	10q24.1	187410	DNTT, TDT	Terminal deoxynucleotidyltransferase	DNTT	1791	ENSG00000107447			Dntt (MGI:98659)
chr10	96343215	96359364	10q24	10q24.1	617200	OPALIN, TMEM10, TMP10	Oligodendrocytic myelin paranodal and inner loop protein	OPALIN	93377	ENSG00000197430			Opalin (MGI:2657025)
chr10	96364605	96513925	10q23-q24	10q24.1	606743	TLL2, KIAA0932	Tolloid-like 2	TLL2	7093	ENSG00000095587			Tll2 (MGI:1346044)
chr10	96518109	96587051	10q24.1	10q24.1	616872	TM9SF3, SMBP	Transmembrane 9 superfamily, member 3	TM9SF3	56889	ENSG00000077147			Tm9sf3 (MGI:1914262)
chr10	96593311	96720521	10q24.1	10q24.1	607942	PIK3AP1, BCAP, FLJ35564	Phosphoinositide 3-kinase adaptor protein 1	PIK3AP1	118788	ENSG00000155629			Pik3ap1 (MGI:1933177)
chr10	96832259	96986211	10q24.1	10q24.1	607698	LCOR, MLR2, KIAA1795	Ligand-dependent nuclear receptor corepressor	LCOR	84458	ENSG00000196233			Lcor (MGI:2443930)
chr10	96998037	97185925	10q24.1	10q24.1	603742	SLIT1, SLIL1, MEGF4	Slit, Drosophila, homolog of, 1	SLIT1	6585	ENSG00000187122			Slit1 (MGI:1315203)
chr10	97222172	97292672	10q24.1	10q24.1	611587	ARHGAP19	RHO GTPase-activating protein 19	ARHGAP19	84986	ENSG00000213390			Arhgap19 (MGI:1918335)
chr10	97332496	97334700	10q24.1	10q24.1	605006	FRAT2	Frequently rearranged in advanced T-cell lymphomas 2	FRAT2	23401	ENSG00000181274			Frat2 (MGI:2673967)
chr10	97356700	97401369	10q24.1	10q24.1	617723	RRP12, KIAA0690	Ribosomal RNA-processing protein 12, S. cerevisiae, homolog of	RRP12	23223	ENSG00000052749			Rrp12 (MGI:2147437)
chr10	97426124	97433443	10q25.3	10q24.1	172250	PGAM1	Phosphoglycerate mutase A, nonmuscle form	PGAM1	5223	ENSG00000171314			Pgam1 (MGI:97552)
chr10	97435908	97446016	10q24.1	10q24.1	606493	EXOSC1, CSL4	Exosome component 1	EXOSC1	51013	ENSG00000171311			Exosc1 (MGI:1913833)
chr10	97446130	97457369	10q24	10q24.1	616750	ZDHHC16, APH2	Zinc finger DHHC domain-containing protein 16	ZDHHC16	84287	ENSG00000171307			Zdhhc16 (MGI:1921418)
chr10	97458323	97498793	10q24.1	10q24.1	614777	MMS19, MMS19L	MMS19 nucleotide excision repair, S. Cerevisiae, homolog of	MMS19	64210	ENSG00000155229			Mms19 (MGI:1919449)
chr10	97498881	97571209	10q24.1-q24.2	10q24.1-q24.2	616388	UBTD1	Ubiquitin domain-containing protein 1	UBTD1	80019	ENSG00000165886			Ubtd1 (MGI:2385092)
chr10	97572440	97583895	10q23.31-q23.32	10q24.2	610734	ANKRD2, ARPP	Ankyrin repeat domain-containing protein 2	ANKRD2	26287	ENSG00000165887			Ankrd2 (MGI:1861447)
chr10	97584344	97612801	10q24.2	10q24.2	613597	HOGA1, DHDPSL, HP3	4-hydroxy-2-oxoglutarate aldolase 1	HOGA1	112817	ENSG00000241935		Hyperoxaluria, primary, type III, 613616 (3)	Hoga1 (MGI:1914682)
chr10	97614552	97634155	10q24.2	10q24.2	617736	MORN4, RTP, UTA	MORN repeat-containing protein 4	MORN4	118812	ENSG00000171160			Morn4 (MGI:2449568)
chr10	97640685	97676433	10q24	10q24.2	609763	PI4K2A	Phosphatidylinositol 4-kinase type 2 alpha	PI4K2A	55361	ENSG00000155252			Pi4k2a (MGI:1934031)
chr10	97713707	97718151	10q24.2	10q24.2	616970	MARVELD1, MARVD1	Marvel domain-containing protein 1	MARVELD1	83742	ENSG00000155254			Marveld1 (MGI:2147570)
chr10	97737120	97760906	10q24.2	10q24.2	610243	ZFYVE27, SPG33	Zinc finger FYVE domain-containing protein 27	ZFYVE27	118813	ENSG00000155256		Spastic paraplegia 33, autosomal dominant, 610244 (3), Autosomal dominant	Zfyve27 (MGI:1919602)
chr10	97766750	97771998	10q24.1	10q24.2	604158	SFRP5, SARP3	Secreted frizzled-related protein 5	SFRP5	6425	ENSG00000120057			Sfrp5 (MGI:1860298)
chr10	97850237	97871577	10q22	10q24.2	614189	GOLGA7B, C10orf132	Golgin A7 family, member B	GOLGA7B	401647	ENSG00000155265			Golga7b (MGI:1918396)
chr10	98247685	98268249	10q24	10q24.2	607318	LOXL4	Lysyl oxidate-like 4	LOXL4	84171	ENSG00000138131			Loxl4 (MGI:1914823)
chr10	98383564	98415220	10q24.2	10q24.2	617889	PYROXD2, C10orf33, YUEF	Pyridine nucleotide-disulphide oxidoreductase domain-containing protein 2	PYROXD2	84795	ENSG00000119943			Pyroxd2 (MGI:1921830)
chr10	98416192	98446962	10q23.1	10q24.2	604982	HPS1	HPS gene 1	HPS1	3257	ENSG00000107521		Hermansky-Pudlak syndrome 1, 203300 (3), Autosomal recessive	Hps1 (MGI:2177763)
chr10	98457076	99235874	10q23-q24	10q24.2	613469	HPSE2, HPA2, UFS1	Heparanase 2	HPSE2	60495	ENSG00000172987		Urofacial syndrome 1, 236730 (3), Autosomal recessive	Hpse2 (MGI:2685814)
chr10	99329098	99394329	10q23-q24	10q24.2	607802	CNNM1, ACDP1	Cyclin M1 (ancient conserved domain protein 1)	CNNM1	26507	ENSG00000119946			Cnnm1 (MGI:1891366)
chr10	99396869	99430772	10q24.1-q25.1	10q24.2	138180	GOT1, ASTQTL1	Glutamic-oxaloacetic transaminase-1, soluble (EC 2.6.1.1)	GOT1	2805	ENSG00000120053	10q26.1 = conflicting localization	Aspartate aminotransferase, serum level of, QTL1, 614419 (3)	Got1 (MGI:95791)
chr10	99532932	99536523	10q24.2	10q24.2	606727	NKX2C, NK2.3, CSX3	NK2, Drosophila, homolog of, C	NKX2-3	159296	ENSG00000119919			Nkx2-3 (MGI:97348)
chr10	99610517	99659506	10q24	10q24.2	609767	SLC25A28, MRS4L, NPD016	Solute carrier family 25 (mitochondrial carrier), member 28	SLC25A28	81894	ENSG00000155287			Slc25a28 (MGI:2180509)
chr10	99659376	99711244	10q23-q24	10q24.2	616753	ENTPD7, LALP1	Ectonucleoside triphosphate diphosphohydrolase 7	ENTPD7	57089	ENSG00000198018			Entpd7 (MGI:2135885)
chr10	99694792	99732665	10q24	10q24.2	603646	COX15, CEMCOX2	Cytochrome c oxidase, subunit 15	COX15	1355	ENSG00000014919		Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 2, 615119 (3), Autosomal recessive; Leigh syndrome due to cytochrome c oxidase deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Cox15 (MGI:1920112)
chr10	99732200	99756136	10q24	10q24.2	610101	CUTC	CutC copper transporter, E. coli, homolog of	CUTC	51076	ENSG00000119929			Cutc (MGI:1913638)
chr10	99782597	99853740	10q24	10q24.2	601107	ABCC2, CMOAT	ATP-binding cassette, subfamily C, member 2 (canalicular multispecific organic anion transporter)	ABCC2	1244	ENSG00000023839		Dubin-Johnson syndrome, 237500 (3), Autosomal recessive	Abcc2 (MGI:1352447)
chr10	99875570	100009952	10q24.2	10q24.2	611282	DNMBP, TUBA, KIAA1010	Dynamin-binding protein	DNMBP	23268	ENSG00000107554			Dnmbp (MGI:1917352)
chr10	100042307	100081884	10q24.2	10q24.2	603103	CPN1, SCPN, CPN	Carboxypeptidase N, polypeptide 1, 50-kD	CPN1	1369	ENSG00000120054		Carboxypeptidase N deficiency, 212070 (3), Autosomal recessive	Cpn1 (MGI:2135874)
chr10	100150089	100186056	10q24.31	10q24.31	611604	ERLIN1, SPG62	Endoplasmic reticulum lipid raft-associated protein 1	ERLIN1	10613	ENSG00000107566		Spastic paraplegia 62, 615681 (3), Autosomal recessive	Erlin1 (MGI:2387613)
chr10	100188297	100229609	10q24	10q24.31	600664	CHUK, IKBKA, NFKBIKA, IKKA, IKK1	Conserved helix-loop-helix ubiquitous kinase	CHUK	1147	ENSG00000213341		Cocoon syndrome, 613630 (3)	Chuk (MGI:99484)
chr10	100232295	100267680	10q24.31	10q24.31	616120	CWF19L1, C19L1, SCAR17	CWF19-like protein 1	CWF19L1	55280	ENSG00000095485		Spinocerebellar ataxia, autosomal recessive 17, 616127 (3), Autosomal recessive	Cwf19l1 (MGI:1919752)
chr10	100237155	100237301	10q24.31	10q24.31	611330	SNORA12	Small nucleolar RNA, H/ACA box, 12	SNORA12	677800		in intron 11 of CWF19L1		
chr10	100273277	100286711	10q24.31	10q24.31	609768	BLOC1S2, BLOS2	Biogenesis of lysosome-related organelles complex 1, subunit 2	BLOC1S2	282991	ENSG00000196072			Bloc1s2 (MGI:1920939)
chr10	100288144	100347029	10q24-q25	10q24.31	604532	PKD2L1, PKDL, PKD2L	Polycystin L	PKD2L1	9033	ENSG00000107593			Pkd2l1 (MGI:1352448)
chr10	100347014	100364830	10q24.31	10q24.31	604031	SCD	Stearoyl-CoA desaturase	SCD	6319	ENSG00000099194	pseudogene on chr.17		Scd1 (MGI:98239)
chr10	100373575	100388353	10q24.31	10q24.31	616240	OLMALINC, LINC00263, OLMALINCAS	Oligodendrocyte maturation-associated long intergenic noncoding RNA	OLMALINC	90271		OLMALINCAS is on opposite strand overlapping exon 1 of OLMALINC		
chr10	100463054	100483641	10q24	10q24.31	601396	WNT8B	Wingless-type MMTV integration site family, member 8B	WNT8B	7479	ENSG00000075290			Wnt8b (MGI:109485)
chr10	100486645	100519837	10q24.3	10q24.31	610258	SEC31B, SEC31L2	Sec31, yeast, homolog of, B	SEC31B	25956	ENSG00000075826			Sec31b (MGI:2685187)
chr10	100523728	100529922	10q23.2-q23.33	10q24.31	602140	NDUFB8	NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 2 (8kD, AGGG)	NDUFB8	4714	ENSG00000166136	previously assigned to 12q21		Ndufb8 (MGI:1914514)
chr10	100535883	100553923	10q24	10q24.31	606615	HIF1AN, FIH1	Hypoxia-inducible factor 1-alpha inhibitor	HIF1AN	55662	ENSG00000166135			Hif1an (MGI:2442345)
chr10	100735708	100829940	10q24.3-q25.1	10q24.31	167409	PAX2, PAPRS, FSGS7	Paired box homeotic gene-2	PAX2	5076	ENSG00000075891		Glomerulosclerosis, focal segmental, 7, 616002 (3), Autosomal dominant; Papillorenal syndrome, 120330 (3), Autosomal dominant	Pax2 (MGI:97486)
chr10	100909415	100965133	10q24	10q24.31	610348	FAM178A, C10orf6	Family with sequence similarity 178, member A	SLF2	55719	ENSG00000119906			Slf2 (MGI:1924968)
chr10	100977819	100987518	10q24	10q24.31	611848	MRPL43	Mitochondrial ribosomal protein L43	MRPL43	84545	ENSG00000055950			Mrpl43 (MGI:2137229)
chr10	100987526	100994402	10q24	10q24.31	606075	TWNK, C10orf2, TWINKLE, PEOA3, IOSCA, MTDPS7, PRLTS5	Twinkle mtDNA helicase	TWNK	56652	ENSG00000107815	PEO digenic with POLG	Mitochondrial DNA depletion syndrome 7 (hepatocerebral type), 271245 (3), Autosomal recessive; Perrault syndrome 5, 616138 (3), Autosomal recessive; Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 3, 609286 (3), Autosomal dominant	Twnk (MGI:2137410)
chr10	100997064	101007835	10q24.3	10q24.31	610454	LZTS2, KIAA1813, LAPSER1	Leucine zipper, putative tumor suppressor 2	LZTS2	84445	ENSG00000107816			Lzts2 (MGI:2385095)
chr10	101007682	101031156	10q24.3	10q24.31	612971	PDZD7	PDZ domain-containing 7	PDZD7	79955	ENSG00000186862		{Retinal disease in Usher syndrome type IIA, modifier of}, 276901 (3), Autosomal recessive; Usher syndrome, type IIC, GPR98/PDZD7 digenic, 605472 (3), Autosomal recessive	Pdzd7 (MGI:3608325)
chr10	101031238	101041242	10q24.31	10q24.31	615571	SFXN3	Sideroflexin 3	SFXN3	81855	ENSG00000107819			Sfxn3 (MGI:2137679)
chr10	101089320	101141265	10q24	10q24.31	612734	TD1	TLX1 divergent gene	TLX1NB	100038246				
chr10	101130772	101137788	10q24	10q24.31	186770	TLX1, HOX11, TCL3	T-cell leukemia, homeobox 1	TLX1	3195	ENSG00000107807	t(7;10) or t(10;4) in T-ALL		Tlx1 (MGI:98769)
chr10	101200000	110100000	10q24.32-q25.1		614927	ECTD5	Ectodermal dysplasia 5, hair/nail type		101101769		between D10S1239 and D10S1264	Ectodermal dysplasia 5, hair/nail type, 614927 (2), Autosomal recessive	
chr10	101226975	101228959	10q24	10q24.32	604255	LBX1, LBX1H	Lady bird late, Drosophila, homolog of, 1	LBX1	10660	ENSG00000138136			Lbx1 (MGI:104867)
chr10	101353807	101557320	10q24-q25	10q24.32	603482	BTRC, BTRCP	Beta-transducin repeat-containing protein	BTRC	8945	ENSG00000166167			Btrc (MGI:1338871)
chr10	101578881	101588318	10q23	10q24.32	606343	POLL	Polymerase, DNA, lambda	POLL	27343	ENSG00000166169			Poll (MGI:1889000)
chr10	101588287	101609663	10q24.32	10q24.32	616467	DPCD	Deleted in primary ciliary dyskinesia, mouse, homolog of	DPCD	25911	ENSG00000166171			Dpcd (MGI:1924407)
chr10	101610663	101695294	10q24	10q24.32	608071	FBXW4, DAC, FBW4, FBWD4	F-box and WD repeat domain containing 4	FBXW4	6468	ENSG00000107829			Fbxw4 (MGI:1354698)
chr10	101770129	101780368	10q24	10q24.32	600483	FGF8, HH6	Fibroblast growth factor-8	FGF8	2253	ENSG00000107831		Hypogonadotropic hypogonadism 6 with or without anosmia, 612702 (3), Autosomal dominant	Fgf8 (MGI:99604)
chr10	101781324	101783412	10q24-q26	10q24.32	606456	NPM3	Nucleophosmin/nucleoplasmin family, member 3	NPM3	10360	ENSG00000107833			Npm3 (MGI:894653)
chr10	101784442	101818708	10q24.1-q24.3	10q24.32	604039	MGEA5	Meningioma-expressed antigen 5	OGA	10724	ENSG00000198408			Mgea5 (MGI:1932139)
chr10	102065366	102068037	10q24.32	10q24.32	607522	HPS6, RU	HPS gene 6	HPS6	79803	ENSG00000166189		Hermansky-Pudlak syndrome 6, 614075 (3), Autosomal recessive	Hps6 (MGI:2181763)
chr10	102102099	102120472	10q24-q25	10q24.32	603451	LDB1, CLIM2, NLI	LIM domain-binding factor-1	LDB1	8861	ENSG00000198728			Ldb1 (MGI:894762)
chr10	102120633	102150332	10q24.2-q24.3	10q24.32	617462	PPRC1, PRC, KIAA0595	Peroxisome proliferator-activated receptor-gamma, coactivator-related protein 1	PPRC1	23082	ENSG00000148840			Pprc1 (MGI:2385096)
chr10	102152175	102163870	10q24.32	10q24.32	602394	NOLC1, p130, NOPP140	Nucleolar and coiled-body phosphoprotein 1	NOLC1	9221	ENSG00000166197			
chr10	102224766	102229588	10q24.32	10q24.32	611815	ELOVL3, CIG30	Elongation of very long chain fatty acids-like 3	ELOVL3	83401	ENSG00000119915			Elovl3 (MGI:1195976)
chr10	102230188	102241473	10q25	10q24.32	602669	PITX3, CTPP4, CTRCT11, ASGD1	Paired-like homeodomain transcription factor-3	PITX3	5309	ENSG00000107859		Anterior segment dysgenesis 1, multiple subtypes, 107250 (3), Autosomal dominant; Cataract 11, multiple types, 610623 (3), Autosomal dominant; Cataract 11, syndromic, 610623 (3), Autosomal dominant	Pitx3 (MGI:1100498)
chr10	102245497	102382898	10q24	10q24.32	603698	GBF1	Golgi-specific brefeldin-A resistance factor 1	GBF1	8729	ENSG00000107862			Gbf1 (MGI:1861607)
chr10	102394109	102402528	10q24	10q24.32	164012	NFKB2, LYT10, CVID10	Nuclear factor of kappa light chain gene enhancer in B-cells 2 (p49/p100); oncogene Lyt-10	NFKB2	4791	ENSG00000077150		Immunodeficiency, common variable, 10, 615577 (3), Autosomal dominant	Nfkb2 (MGI:1099800)
chr10	102402616	102420163	10q24	10q24.32	602327	PSD	Pleckstrin and Sec7 domain protein	PSD	5662	ENSG00000059915			Psd (MGI:1920978)
chr10	102419221	102423137	10q24.32	10q24.32	610287	FBXL15, JET	F-box and leucine-rich repeat protein 15	FBXL15	79176	ENSG00000107872			Fbxl15 (MGI:1915681)
chr10	102423244	102432665	10q24.32	10q24.32	614142	CUEDC2	Cue domain-containing protein 2	CUEDC2	79004	ENSG00000107874			Cuedc2 (MGI:1914366)
chr10	102436511	102436583	10q24.32	10q24.32	610567	MIR146B	Micro RNA 146B	MIR146B	574447				
chr10	102479228	102502754	10q24.32	10q24.32	605143	ACTR1A, ARP1	Actin-related protein 1A	ACTR1A	10121	ENSG00000138107			Actr1a (MGI:1858964)
chr10	102502800	102633457	10q24-q25	10q24.32	607035	SUFU, SUFUXL, SUFUH, JBTS32	Suppressor of fused	SUFU	51684	ENSG00000107882		Basal cell nevus syndrome, 109400 (3), Autosomal dominant; Joubert syndrome 32, 617757 (3), Autosomal recessive; Medulloblastoma, desmoplastic, 155255 (3), Autosomal recessive, Autosomal dominant; {Meningioma, familial, susceptibility to}, 607174 (3), Autosomal dominant	Sufu (MGI:1345643)
chr10	102644494	102658318	10q24.3	10q24.32	606125	TRIM8, RNF27, GERP	Tripartite motif-containing 8	TRIM8	81603	ENSG00000171206			Trim8 (MGI:1933302)
chr10	102673726	102714432	10q23.3	10q24.32	604695	ARL3, ARFL3	ADP-ribosylation factor-like 3	ARL3	403	ENSG00000138175			Arl3 (MGI:1929699)
chr10	102714517	102739189	10q24.32	10q24.32	615570	SFXN2	Sideroflexin 2	SFXN2	118980	ENSG00000156398			Sfxn2 (MGI:2137678)
chr10	102742707	102816266	10q24.32	10q24.32	611129	C10orf26, OPAL1	Chromosome 10 open reading frame 26	WBP1L	54838	ENSG00000166272			Wbp1l (MGI:107577)
chr10	102830530	102837532	10q24.3	10q24.32	609300	CYP17A1, CYP17, P450C17	Cytochrome P450, family 17, subfamily A, polypeptide 1 (steroid 17-alpha-hydroxylase)	CYP17A1	1586	ENSG00000148795	at least 2 genes; distal to GOT1	17-alpha-hydroxylase/17,20-lyase deficiency, 202110 (3), Autosomal recessive; 17,20-lyase deficiency, isolated, 202110 (3), Autosomal recessive	Cyp17a1 (MGI:88586)
chr10	102854209	102864960	10q24.32	10q24.32	616600	BORCS7, C10orf32	BLOC1-related complex, subunit 7	BORCS7	119032	ENSG00000166275			Borcs7 (MGI:1913689)
chr10	102869452	102901898	10q24	10q24.32	611806	AS3MT, CYT19	Arsenic (+3 oxidation state) methyltransferase	AS3MT	57412	ENSG00000214435			As3mt (MGI:1929882)
chr10	102918292	103087168	10q24.33	10q24.32	607803	CNNM2, ACDP2, HOMG6, HOMGSMR	Cyclin M2	CNNM2	54805	ENSG00000148842		Hypomagnesemia 6, renal, 613882 (3), Autosomal dominant; Hypomagnesemia, seizures, and mental retardation, 616418 (3), Autosomal recessive, Autosomal dominant	Cnnm2 (MGI:2151054)
chr10	103088016	103193305	10q24.3	10q24.32-q24.33	600417	NT5C2, NT5B, PNT5, SPG45	5' nucleotidase, cytosolic II	NT5C2	22978	ENSG00000076685		Spastic paraplegia 45, autosomal recessive, 613162 (3), Autosomal recessive	Nt5c2 (MGI:2178563)
chr10	103302795	103351133	10q24.33	10q24.33	607816	PCGF6, RNF134, MBLR	Polycomb group ring finger 6	PCGF6	84108	ENSG00000156374			Pcgf6 (MGI:1918291)
chr10	103367952	103389064	10q24-q25.2	10q24.33	601787	TAF5, TAF2D, TAFII100	TAF5 RNA polymerase II, TATA box binding protein-associated factor, 100kD	TAF5	6877	ENSG00000148835			Taf5 (MGI:2442144)
chr10	103389049	103396512	10q24	10q24.33	615204	USMG5, DAPIT	Upregulated during skeletal muscle growth 5, mouse, homolog of	ATP5MD	84833	ENSG00000173915			Usmg5 (MGI:1891435)
chr10	103396614	103446294	10q24.2-q25.1	10q24.33	612333	PDCD11, ALG4, NFBP, KIAA0185	Programmed cell death 11	PDCD11	22984	ENSG00000148843			Pdcd11 (MGI:1341788)
chr10	103446782	103452404	10q24.33	10q24.33	612235	CALHM2, FAM26B	Calcium homeostasis modulator 2	CALHM2	51063	ENSG00000138172			Calhm2 (MGI:1919941)
chr10	103453386	103458890	10q24.33	10q24.33	612234	CALHM1, FAM26C	Calcium homeostasis modulator 1	CALHM1	255022	ENSG00000185933	?Alzheimer disease, 605526		Calhm1 (MGI:3643383)
chr10	103493787	103592551	10q25.1	10q24.33	603804	NEURL1, NEURL, NEUR1	Neuralized E3 ubiquitin protein ligase 1	NEURL1	9148	ENSG00000107954			Neurl1a (MGI:1334263)
chr10	103877557	103918286	10q24.33	10q24.33	613128	STN1, OBFC1, AAF44	STN1, CST complex subunit	STN1	79991	ENSG00000107960		Cerebroretinal microangiopathy with calcifications and cysts 2, 617341 (3), Autosomal recessive	Stn1 (MGI:1915581)
chr10	103967099	104029232	10q24.33-q25.1	10q24.3-q25.1	616563	SLK, LOSK, KIAA0204	STE20-like protein kinase	SLK	9748	ENSG00000065613			Slk (MGI:103241)
chr10	104000000	133797422	10q25-q26		609750	EIG4	Epilepsy, idiopathic generalized, susceptibility to 4		780913		between D16S397 and D16S3095	{Epilepsy, idiopathic generalized, susceptibility to 4}, 609750 (2)	
chr10	104000000	117300000	10q25		603266	IDDM17	Insulin-dependent diabetes mellitus-17	IDDM17	8691			{Diabetes mellitus, insulin-dependent, 17}, 603266 (2)	
chr10	104031287	104085879	10q24.3	10q25.1	113811	COL17A1, BPAG2, ERED	Collagen XVII, alpha-1 polypeptide	COL17A1	1308	ENSG00000065618		Epidermolysis bullosa, junctional, localisata variant, 226650 (3), Autosomal recessive; Epidermolysis bullosa, junctional, non-Herlitz type, 226650 (3), Autosomal recessive; Epithelial recurrent erosion dystrophy, 122400 (3), Autosomal dominant	
chr10	104122057	104126384	10q25.1	10q25.1	616527	SFR1, MEI5, C10orf78	SWI5-dependent homologous recombination repair protein 1	SFR1	119392	ENSG00000156384			Sfr1 (MGI:1915038)
chr10	104129887	104232382	10q25.1	10q25.1	617558	CFAP43, WDR96, C10orf79, SPGF19	Cilia- and flagella-associated protein 43	CFAP43	80217	ENSG00000197748		Spermatogenic failure 19, 617592 (3), Autosomal recessive	Cfap43 (MGI:1289258)
chr10	104254193	104267463	10q24-q25	10q25.1	605482	GSTO1	Glutathione S-transferase, omega-1	GSTO1	9446	ENSG00000148834			Gsto1 (MGI:1342273)
chr10	104267625	104304947	10q24-q25	10q25.1	612314	GSTO2	Glutathione S-transferase, omega-2	GSTO2	119391	ENSG00000065621			Gsto2 (MGI:1915464)
chr10	104641100	105265241	10q23.3	10q25.1	606285	SORCS3, KIAA1059	SORCS receptor 3	SORCS3	22986	ENSG00000156395			Sorcs3 (MGI:1913923)
chr10	106573662	107181137	10q23.3	10q25.1	606283	SORCS1	SORCS receptor 1	SORCS1	114815	ENSG00000108018			Sorcs1 (MGI:1929666)
chr10	109864765	109923552	10q25.3	10q25.1	602443	XPNPEP1, SAMP, XPNPEPL	X-prolyl aminopeptidase P1	XPNPEP1	7511	ENSG00000108039			Xpnpep1 (MGI:2180003)
chr10	109996349	110135564	10q24.2-q24.3	10q25.1-q25.2	601568	ADD3, ADDL, CPSQ3	Adducin-3, gamma	ADD3	120	ENSG00000148700	fusion with NUP98 in T-ALL	Cerebral palsy, spastic quadriplegic, 3, 617008 (3), Autosomal recessive	Add3 (MGI:1351615)
chr10	110207604	110287364	10q25	10q25.2	600020	MXI1	MAX-interacting protein 1	MXI1	4601	ENSG00000119950		Neurofibrosarcoma (3); {Prostate cancer, susceptibility to}, 176807 (3), Autosomal dominant	Mxi1 (MGI:97245)
chr10	110293039	110304968	10q23	10q25.2	603519	SMNR, SPF30	Survival motor neuron-related protein	SMNDC1	10285	ENSG00000119953			Smndc1 (MGI:1923729)
chr10	110497866	110511543	10q25	10q25.2	603069	DUSP5, HVH3	Dual-specificity phosphatase-5	DUSP5	1847	ENSG00000138166			Dusp5 (MGI:2685183)
chr10	110567690	110604633	10q25	10q25.2	606062	SMC3, CSPG6, HCAP, BAM, CDLS3	Structural maintenance of chromosomes 3	SMC3	9126	ENSG00000108055		Cornelia de Lange syndrome 3, 610759 (3), Autosomal dominant	Smc3 (MGI:1339795)
chr10	110641932	110839470	10q25.2	10q25.2	613171	RBM20	RNA-binding motif protein 20	RBM20	282996	ENSG00000203867		Cardiomyopathy, dilated, 1DD, 613172 (3), Autosomal dominant	Rbm20 (MGI:1920963)
chr10	110871794	110900005	10q24	10q25.2	608610	PDCD4	Programmed cell death 4	PDCD4	27250	ENSG00000150593			Pdcd4 (MGI:107490)
chr10	110898729	110919365	10q25.2	10q25.2	613605	BBIP1, NCRNA00081, BBIP10, BBS18	BBSome interacting protein 1	BBIP1	92482	ENSG00000214413	mutation identified in 1 BBS18 family	?Bardet-Biedl syndrome 18, 615995 (3), Autosomal recessive	Bbip1 (MGI:1913610)
chr10	110919369	111013666	10q25	10q25.2	602775	SHOC2, SIAA0862, SOC2, SUR8	Suppressor of clear, C. elegans, homolog of	SHOC2	8036	ENSG00000108061		Noonan-like syndrome with loose anagen hair, 607721 (3), Autosomal dominant	Shoc2 (MGI:1927197)
chr10	111077031	111080906	10q24-q26	10q25.2	104210	ADRA2A, ADRA2R	Adrenergic, alpha-2A-, receptor	ADRA2A	150	ENSG00000150594			Adra2a (MGI:87934)
chr10	112149863	112216305	10q24-q26	10q25.2	602395	GPAM	Glycerol-3-phosphate acyltransferase	GPAM	57678	ENSG00000119927			Gpam (MGI:109162)
chr10	112283655	112305034	10q25.2	10q25.2	602653	TECTB	Tectorin, beta	TECTB	6975	ENSG00000119913			Tectb (MGI:109574)
chr10	112374157	112428379	10q25.1-q25.2	10q25.2	605677	ACSL5, FACL5, ACS5	Acyl-CoA synthetase long-chain family member 5	ACSL5	51703	ENSG00000197142			Acsl5 (MGI:1919129)
chr10	112446987	112949402	10q25.2	10q25.2	614316	VTI1A, VTI1RP2, MMDS3	VTI1, S. cerevisiae, homolog of, A	VTI1A	143187	ENSG00000151532			Vti1a (MGI:1855699)
chr10	112950219	113167677	10q25.3	10q25.2-q25.3	602228	TCF7L2, TCF4	Transcription factor 7-like 2	TCF7L2	6934	ENSG00000148737		{Diabetes mellitus, type 2, susceptibility to}, 125853 (3), Autosomal dominant	Tcf7l2 (MGI:1202879)
chr10	113100000	133797422	10q25.3-q26.3		102777	ADORA2L1, ADORA2L	Adenosine A2 receptor-like 1						
chr10	113550830	113589601	10q25-q26	10q25.3	603924	HABP2, PHBP, HGFAL, FSAP, NMTC5	Hyaluronan-binding protein 2	HABP2	3026	ENSG00000148702	mutation identified in 1 NMTC5 family	{?Thyroid cancer, nonmedullary, 5}, 616535 (3), Autosomal dominant; {Venous thromboembolism, susceptibility to}, 188050 (3), Autosomal dominant	Habp2 (MGI:1196378)
chr10	113588823	113664069	10q24-q26	10q25.3	602873	NRAP	Nebulin-related anchoring protein	NRAP	4892	ENSG00000197893			Nrap (MGI:1098765)
chr10	113679161	113730908	10q25.1-q25.2	10q25.3	601761	CASP7, MCH3	Caspase 7, apoptosis-related cysteine protease	CASP7	840	ENSG00000165806			Casp7 (MGI:109383)
chr10	113834723	113854403	10q25.1	10q25.3	609682	DCLRE1A, SNM1, SNM1A, KIAA0086	DNA cross-link repair protein 1A	DCLRE1A	9937	ENSG00000198924			Dclre1a (MGI:1930042)
chr10	114044046	114046907	10q24-q26	10q25.3	109630	ADRB1, ADRB1R, RHR	Adrenergic, beta-1-, receptor	ADRB1	153	ENSG00000043591	close linkage to ADRA2R	{Congestive heart failure and beta-blocker response, modifier of} (3); [Resting heart rate], 607276 (3)	Adrb1 (MGI:87937)
chr10	114174441	114232668	10q25.3	10q25.3	605796	TDRD1	Tudor domain protein 1	TDRD1	56165	ENSG00000095627			Tdrd1 (MGI:1933218)
chr10	114280759	114404777	10q25.3	10q25.3	612420	AFAP1L2, XB130, KIAA1914	Actin filament-associated protein 1-like protein 2	AFAP1L2	84632	ENSG00000169129			Afap1l2 (MGI:2147658)
chr10	114431109	114821642	10q25	10q25.3	602330	LIMAB1	LIM actin-binding protein-1	ABLIM1	3983	ENSG00000099204			Ablim1 (MGI:1194500)
chr10	114821743	114899826	10q25.3	10q25.3	617312	FAM160B1, KIAA1600	Family with sequence similarity 160, member B1	FAM160B1	57700	ENSG00000151553			Fam160b1 (MGI:2147545)
chr10	114938192	114977679	10q25.3	10q25.3	610726	TRUB1, PUS4	TRUB pseudouridine synthase, E. coli, homolog of, 1	TRUB1	142940	ENSG00000165832			Trub1 (MGI:1919383)
chr10	115093364	115948998	10q26	10q25.3	612869	ATRNL1, KIAA0534, ALP	Attractin-like 1	ATRNL1	26033	ENSG00000107518			Atrnl1 (MGI:2147749)
chr10	116056924	116273644	10q26	10q25.3	601496	GFRA1, GDNFRA, GDNFR	GDNF family receptor, alpha-1	GFRA1	2674	ENSG00000151892			Gfra1 (MGI:1100842)
chr10	116545923	116567857	10q26.1	10q25.3	246600	PNLIP, PNLIPD	Pancreatic lipase	PNLIP	5406	ENSG00000175535	mutation identified in 1 family	?Pancreatic lipase deficiency, 614338 (3), Autosomal recessive	Pnlip (MGI:97722)
chr10	116590958	116609174	10q25.3	10q25.3	604422	PNLIPRP1, PLRP1	Pancreatic lipase-related protein 1	PNLIPRP1	5407	ENSG00000187021			Pnliprp1 (MGI:97723)
chr10	116620952	116645142	10q25.3	10q25.3	604423	PNLIPRP2, PLRP2	Pancreatic lipase-related protein 2	PNLIPRP2	5408	ENSG00000266200			Pnliprp2 (MGI:1336202)
chr10	116671191	116853271	10q26.12	10q25.3	610701	HSPA12A, KIAA0417	Heat-shock 70kD protein 12A	HSPA12A	259217	ENSG00000165868			Hspa12a (MGI:1920692)
chr10	116883376	117126585	10q25.3	10q25.3	611171	KIAA1598, SHOOTIN1	Kiaa1598 gene	SHTN1	57698	ENSG00000187164			Shtn1 (MGI:1918903)
chr10	117128520	117138300	10q26.1	10q25.3	604294	VAX1, MCOPS11	Ventral anterior homeo box 1	VAX1	11023	ENSG00000148704	mutation identified in one MCOPS11 family	?Microphthalmia, syndromic 11, 614402 (3), Autosomal recessive	Vax1 (MGI:1277163)
chr10	117197488	117210298	10q25.3	10q25.3	613655	KCNK18, TRESK, TRIK, MGR13	Potassium channel, subfamily K, member 18	KCNK18	338567	ENSG00000186795		{Migraine, with or without aura, susceptibility to, 13}, 613656 (3)	Kcnk18 (MGI:2685627)
chr10	117241072	117279429	10q25	10q25.3	193001	SLC18A2, VAT2, SVMT	Solute carrier family 18 (vesicular monoamine), member 2	SLC18A2	6571	ENSG00000165646			Slc18a2 (MGI:106677)
chr10	117280488	117375491	10q25.3-q26.11	10q25.3-q26.1	614235	PDZD8	PDZ domain-containing protein 8	PDZD8	118987	ENSG00000165650			Pdzd8 (MGI:2677270)
chr10	117300000	133797422	10q26		615163	CORD17	Cone-rod dystrophy 17	CORD17	101409267		between D10S1757 and D10S1782	Cone-rod dystrophy 17, 615163 (2), Autosomal dominant	
chr10	117300000	133797422	10q26		609625	DEL10q26, C10q26DEL	Chromosome 10q26 deletion syndrome					Chromosome 10q26 deletion syndrome, 609625 (4), Autosomal dominant	
chr10	117300000	133797422	10q26		131200	ENDO1	Endometriosis, susceptibility to, 1		100188863		max lod at D10S587	{Endometriosis, susceptibility to, 1}, 131200 (2), Autosomal recessive, Multifactorial	
chr10	117300000	133797422	10q26		609116	RRIS	Respiratory rhythmicity in sleep		497662			[Respiratory rhythmicity in sleep], 609116 (2)	
chr10	117484292	117545067	10q26	10q26.11	607637	EMX2OS	EMX2 opposite strand	EMX2OS	196047		non-coding RNA		
chr10	117542444	117549545	10q26.1	10q26.11	600035	EMX2	Empty spiracles, Drosophila, homolog of, 2	EMX2	2018	ENSG00000170370	close to VAX1	Schizencephaly, 269160 (3)	Emx2 (MGI:95388)
chr10	118004915	118046920	10q26	10q26.11	608599	RAB11FIP2, KIAA0941	RAB11 family-interacting protein 2	RAB11FIP2	22841	ENSG00000107560			Rab11fip2 (MGI:1922248)
chr10	118046820	118210152	10q26	10q26.11	608598	CASC2	Cancer susceptibility candidate 2	CASC2	255082		head-to-head orientation with RAB11FIP2		
chr10	118593403	118595647	10q25.3-q26	10q26.11	600895	GPR10	G protein-coupled receptor-10	PRLHR	2834	ENSG00000119973			Prlhr (MGI:2135956)
chr10	119029715	119033731	10q26.11	10q26.11	608226	NANOS1, NOS1, SPGF12	NANOS, Drosophila, homolog of, 1	NANOS1	340719	ENSG00000188613		Spermatogenic failure 12, 615413 (3), Autosomal dominant	Nanos1 (MGI:2669254)
chr10	119033669	119080883	10q26	10q26.11	602039	EIF3A, EIF3S10, P167	Eukaryotic translation initiation factor 3, subunit A	EIF3A	8661	ENSG00000107581			Eif3a (MGI:95301)
chr10	119140912	119165727	10q26.11	10q26.11	615564	SFXN4, COXPD18	Sideroflexin 4	SFXN4	119559	ENSG00000183605		Combined oxidative phosphorylation deficiency 18, 615578 (3), Autosomal recessive	Sfxn4 (MGI:2137680)
chr10	119167698	119178864	10q25-q26	10q26.11	604769	PRDX3, AOP1	Peroxiredoxin 3 (antioxidant protein 1)	PRDX3	10935	ENSG00000165672			Prdx3 (MGI:88034)
chr10	119207684	119455618	10q24-qter	10q26.11	600870	GRK5, GPRK5	G protein-coupled receptor kinase 5	GRK5	2869	ENSG00000198873			Grk5 (MGI:109161)
chr10	119573464	119598840	10q	10q26.11	603413	TIAL1, TIAR, TCBP	Tia1 cytotoxic granule-associated RNA-binding protein-like 1	TIAL1	7073	ENSG00000151923			Tial1 (MGI:107913)
chr10	119651369	119677818	10q25.2-q26.2	10q26.11	603883	BAG3, MFM6	BCL2-associated athanogene 3	BAG3	9531	ENSG00000151929		Cardiomyopathy, dilated, 1HH, 613881 (3), Autosomal dominant; Myopathy, myofibrillar, 6, 612954 (3), Autosomal dominant	Bag3 (MGI:1352493)
chr10	119704394	119830481	10q26.11	10q26.11	609389	INPP5F, SAC2, KIAA0966	Inositol polyphosphate 5-phosphatase F	INPP5F	22876	ENSG00000198825			Inpp5f (MGI:2141867)
chr10	119829403	119873627	10q26.11	10q26.11	610909	MCMBP, C10orf119	Minichromosome maintenance complex-binding protein	MCMBP	79892	ENSG00000197771			Mcmbp (MGI:1920977)
chr10	119892572	119944657	10q26.11-q26.12	10q26.11-q26.12	617852	SEC23IP	Sec23-interacting protein	SEC23IP	11196	ENSG00000107651			Sec23ip (MGI:2450915)
chr10	120851174	120909525	10q26	10q26.12	606417	WDR11, DR11, KIAA1351, BRWD2, HH14	WD repeat-containing protein 11	WDR11	55717	ENSG00000120008		Hypogonadotropic hypogonadism 14 with or without anosmia, 614858 (3), Autosomal dominant	Wdr11 (MGI:1920230)
chr10	121478329	121598457	10q26	10q26.13	176943	FGFR2, BEK, CFD1, JWS, TK14, BBDS	Fibroblast growth factor receptor-2 (bacteria-expressed kinase)	FGFR2	2263	ENSG00000066468		Antley-Bixler syndrome without genital anomalies or disordered steroidogenesis, 207410 (3), Autosomal dominant; Apert syndrome, 101200 (3), Autosomal dominant; Beare-Stevenson cutis gyrata syndrome, 123790 (3), Autosomal dominant; Bent bone dysplasia syndrome, 614592 (3), Autosomal dominant; Craniofacial-skeletal-dermatologic dysplasia, 101600 (3), Autosomal dominant; Craniosynostosis, nonspecific (3); Crouzon syndrome, 123500 (3), Autosomal dominant; Gastric cancer, somatic, 613659 (3); Jackson-Weiss syndrome, 123150 (3), Autosomal dominant; LADD syndrome, 149730 (3), Autosomal dominant; Pfeiffer syndrome, 101600 (3), Autosomal dominant; Saethre-Chotzen syndrome, 101400 (3), Autosomal dominant; Scaphocephaly and Axenfeld-Rieger anomaly (3); Scaphocephaly, maxillary retrusion, and mental retardation, 609579 (3)	Fgfr2 (MGI:95523)
chr10	121957087	121975227	10q26.13	10q26.13	612987	NSMCE4A, NSE4A	Non-SMC element 4, S. cerevisiae, homolog of, A	NSMCE4A	54780	ENSG00000107672			Nsmce4a (MGI:1915122)
chr10	121989173	122254544	10q26	10q26.13	605302	TACC2	Transforming, acidic, coiled-coil-containing protein 2	TACC2	10579	ENSG00000138162			Tacc2 (MGI:1928899)
chr10	122374577	122432354	10q25.3-q26.2	10q26.13	607772	PLEKHA1, TAPP1	Pleckstrin homology domain-containing protein, family A, member 1	PLEKHA1	59338	ENSG00000107679			Plekha1 (MGI:2442213)
chr10	122454652	122457351	10q26.13	10q26.13	611313	LOC387715, ARMD8	LOC387715 gene	ARMS2	387715	ENSG00000254636		{Macular degeneration, age-related, 8}, 613778 (3)	
chr10	122461524	122514907	10q25.3-q26.2	10q26.13	602194	HTRA1, PRSS11, ARMD7, CARASIL, CADASIL2	HTRA serine peptidase 1	HTRA1	5654	ENSG00000166033		CARASIL syndrome, 600142 (3), Autosomal recessive; Cerebral arteriopathy, autosomal dominant, with subcortical infarcts and leukoencephalopathy, type 2, 616779 (3), Autosomal dominant; {Macular degeneration, age-related, 7}, 610149 (3); {Macular degeneration, age-related, neovascular type}, 610149 (3)	Htra1 (MGI:1929076)
chr10	122560664	122643735	10q25.3-q26.1	10q26.13	601969	DMBT1	Deleted in malignant brain tumors 1	DMBT1	1755	ENSG00000187908			Dmbt1 (MGI:106210)
chr10	122832154	122846174	10q26.13	10q26.13	616644	CUZD1, ERG1, ITMAP1	Cub and zona pellucida-like domains 1	CUZD1	50624	ENSG00000138161			Cuzd1 (MGI:1202881)
chr10	122980039	122990406	10q26.13	10q26.13	611310	PSTK, C10orf89	Phosphoseryl-tRNA kinase	PSTK	118672	ENSG00000179988			Pstk (MGI:2685945)
chr10	122990805	123008849	10q26.13	10q26.13	606238	IFZF5, ZNFN1A5, PEGASUS	Ikaros family zinc finger 5	IKZF5	64376	ENSG00000095574			Ikzf5 (MGI:1914393)
chr10	123008912	123058289	10q25-q26	10q26.13	600301	ACADSB, SBCAD	Acyl-Coenzyme A dehydrogenase, short/branched chain	ACADSB	36	ENSG00000196177		2-methylbutyrylglycinuria, 610006 (3), Autosomal recessive	Acadsb (MGI:1914135)
chr10	123136050	123137730	10q26.13	10q26.13	613380	HMX3, NKX5.1	H6 family homeobox 3	HMX3	340784	ENSG00000188620			Hmx3 (MGI:107160)
chr10	123142420	123150672	10q25.2-q26.3	10q26.13	600647	HMX2	Homeo box (H6 family) 2	HMX2	3167	ENSG00000188816			Hmx2 (MGI:107159)
chr10	123154243	123165369	10q24-q26	10q26.13	603719	BUB3	Budding uninhibited by benzimidazoles 3, S. cerevisiae, homolog of	BUB3	9184	ENSG00000154473			Bub3 (MGI:1343463)
chr10	123666354	123697398	10q26.2-q26.3	10q26.13	604847	GPR26	G protein-coupled receptor 26	GPR26	2849	ENSG00000154478			Gpr26 (MGI:2441758)
chr10	123745635	123944093	10q26.13	10q26.13	617348	CPXM2, CPX2	Carboxypeptidase X, M14 family, member 2	CPXM2	119587	ENSG00000121898			Cpxm2 (MGI:1926006)
chr10	124006058	124093683	10q26	10q26.13	608277	CHST15, BRAG, KIAA0598	Carbohydrate sulfotransferase 15	CHST15	51363	ENSG00000182022			Chst15 (MGI:1924840)
chr10	124397302	124418975	10q26	10q26.13	613349	OAT, GACR	Ornithine aminotransferase	OAT	4942	ENSG00000065154	pseudogene at Xp11.2	Gyrate atrophy of choroid and retina with or without ornithinemia, 258870 (3), Autosomal recessive	Oat (MGI:97394)
chr10	124461771	124614140	10q26.13	10q26.13	617231	LHPP	Phospholysine phosphohistidine inorganic pyrophosphate phosphatase	LHPP	64077	ENSG00000107902			Lhpp (MGI:1923679)
chr10	124619293	124744360	10q26.13	10q26.13	617289	FAM53B, KIAA0140	Family with sequence similarity 53, member B	FAM53B	9679	ENSG00000189319			Fam53b (MGI:1925188)
chr10	124757830	124791940	10q26.13	10q26.13	617794	EEF1AKMT2, METTL10	EEF1A lysine methyltransferase 2	EEF1AKMT2	399818	ENSG00000203791			Eef1akmt2 (MGI:1919346)
chr10	124801784	124836669	10q26.13	10q26.13	611144	FAM175B, ABRO1, KIAA0157	Family with sequence similarity 175, member B	ABRAXAS2	23172	ENSG00000165660			Abraxas2 (MGI:1926116)
chr10	124939488	124987435	10q26.13	10q26.13	611749	ZRANB1, TRABID	Zinc finger- and RAN-binding domain-containing protein 1	ZRANB1	54764	ENSG00000019995			Zranb1 (MGI:106441)
chr10	124987848	125161060	10q26.13	10q26.13	602619	CTBP2	C-terminal-binding protein 2	CTBP2	1488	ENSG00000175029			Ctbp2 (MGI:1201686)
chr10	125766452	125775820	10q26.13	10q26.2	608416	MMP21, HTX7	Matrix metalloproteinase 21	MMP21	118856	ENSG00000154485		Heterotaxy, visceral, 7, autosomal, 616749 (3), Autosomal recessive	Mmp21 (MGI:2664387)
chr10	125784979	125823279	10q25.2-q26.3	10q26.2	606938	UROS	Uroporphyrinogen III synthase	UROS	7390	ENSG00000188690		Porphyria, congenital erythropoietic, 263700 (3), Autosomal recessive	Uros (MGI:98917)
chr10	125823534	125853694	10q25.3-q26.2	10q26.2	611883	BCCIP, TOK1	BRCA2- and CDKN1A-interacting protein	BCCIP	56647	ENSG00000107949			Bccip (MGI:1913415)
chr10	125836339	125881314	10q26	10q26.2	607960	DHX32, DDX32	DEAH (Asp-Glu-Ala-His) box polypeptide 32	DHX32	55760	ENSG00000089876			Dhx32 (MGI:2141813)
chr10	125896222	126009598	10q26.2	10q26.2	611640	FANK1	Fibronectin type III and ankyrin repeat domains 1	FANK1	92565	ENSG00000203780			Fank1 (MGI:1914180)
chr10	126012384	126388557	10q26.3	10q26.2	602714	ADAM12, MLTN	A disintegrin and metalloproteinase domain 12 (Meltrin-alpha, mouse, homolog of)	ADAM12	8038	ENSG00000148848			Adam12 (MGI:105378)
chr10	126424996	126670509	10q26.2	10q26.2	617735	C10orf90, FATS	Chromosome 10 open reading frame 90	C10orf90	118611	ENSG00000154493			D7Ertd443e (MGI:1196431)
chr10	126905408	127452516	10q26.13-q26.3	10q26.2	601403	DOCK1, DOCK180	Dedicator of cytokinesis-1	DOCK1	1793	ENSG00000150760			Dock1 (MGI:2429765)
chr10	127135425	127196572	10q26.2	10q26.2	617129	FAM196A, C10orf141, INSYN2	Family with sequence similarity 196, member A	FAM196A	642938	ENSG00000188916			Fam196a (MGI:3605068)
chr10	127549348	127552670	10q26.2	10q26.2	609513	NPS	Neuropeptide S	NPS	594857	ENSG00000214285			Nps (MGI:3642232)
chr10	127737273	127741185	10q26.2	10q26.2	617202	FOXI2	Forkhead box I2	FOXI2	399823	ENSG00000186766			Foxi2 (MGI:3028075)
chr10	127907052	128085854	10q26	10q26.2	600926	PTPRE	Protein tyrosine phosphatase, receptor type, epsilon	PTPRE	5791	ENSG00000132334			Ptpre (MGI:97813)
chr10	128096658	128126404	10q25-qter	10q26.2	176741	MKI67	Proliferation-related Ki-67 antigen	MKI67	4288	ENSG00000148773			Mki67 (MGI:106035)
chr10	128800000	133797422	10q26.3		166760	OMS	Otitis media susceptibility to		619538		also 19q, 3p	{Otitis media, susceptibility to}, 166760 (2)	
chr10	129467183	129770982	10q26	10q26.3	156569	MGMT	Methylguanine-DNA methyltransferase	MGMT	4255	ENSG00000170430			Mgmt (MGI:96977)
chr10	129835231	129964273	10q26.3	10q26.3	607407	EBF3, COE3, HADDS	Early B-cell factor 3	EBF3	253738	ENSG00000108001		Hypotonia, ataxia, and delayed development syndrome, 617330 (3), Autosomal dominant	Ebf3 (MGI:894289)
chr10	130136374	130182876	10q26.3	10q26.3	612754	GLRX3, PICOT	Glutaredoxin 3	GLRX3	10539	ENSG00000108010			Glrx3 (MGI:1353653)
chr10	131900643	131971534	10q26.3	10q26.3	613992	PPP2R2D	Protein phosphatase 2, regulatory subunit B, delta	PPP2R2D	55844	ENSG00000175470			Ppp2r2d (MGI:1289252)
chr10	131967682	131982012	10q26.3	10q26.3	603293	BNIP3, NIP3	BCL2/adenovirus E1B 19-kD protein-interacting protein 3	BNIP3	664	ENSG00000176171			Bnip3 (MGI:109326)
chr10	132036067	132184851	10q26.1	10q26.3	611198	JAKMIP3, C10orf39, NECC2, JAMIP3	Janus kinase and microtubule interacting protein 3	JAKMIP3	282973	ENSG00000188385			Jakmip3 (MGI:1921254)
chr10	132184982	132205775	10q25.2-q26	10q26.3	608407	DPYSL4, CRMP3, ULIP4	Dihydropyrimidinase-like 4	DPYSL4	10570	ENSG00000151640			Dpysl4 (MGI:1349764)
chr10	132537778	132783479	10q26.3	10q26.3	600106	INPP5A	Inositol polyphosphate-5-phosphatase, 40kD	INPP5A	3632	ENSG00000068383			Inpp5a (MGI:2686961)
chr10	132782228	132786032	10q26	10q26.3	605955	NKX6-2, NKX6B, NKX6.2, SPAX8	NK6 transcription factor related, locus 2 (Drosophila)	NKX6-2	84504	ENSG00000148826		Spastic ataxia 8, autosomal recessive, with hypomyelinating leukodystrophy, 617560 (3), Autosomal recessive	Nkx6-2 (MGI:1352738)
chr10	133070928	133131674	10q26.3	10q26.3	612302	ADGRA1, GPR123, KIAA1828	Adhesion G protein-coupled receptor A1	ADGRA1	84435	ENSG00000197177			Adgra1 (MGI:1277167)
chr10	133160431	133226411	10q26.3	10q26.3	616237	KNDC1, RASGEF2, KIAA1768	Kinase noncatalytic C-lobe domain-containing protein 1	KNDC1	85442	ENSG00000171798			Kndc1 (MGI:1923734)
chr10	133230273	133231557	10q26	10q26.3	604130	UTF1	Undifferentiated embryonic cell transcription factor 1	UTF1	8433	ENSG00000171794			Utf1 (MGI:1276125)
chr10	133237903	133241929	10q26.3	10q26.3	607158	VENTX, VENTX2, HPX42B	VENT homeobox	VENTX	27287	ENSG00000151650			
chr10	133262415	133276902	10q26.3	10q26.3	602267	ADAM8, CD156	A disintegrin and metalloprotease domain 8	ADAM8	101	ENSG00000151651			Adam8 (MGI:107825)
chr10	133278629	133312336	10q26.3	10q26.3	617817	TUBGCP2, GCP2, GRIP103, SPC97, ALP4	Tubulin-gamma complex-associated protein 2	TUBGCP2	10844	ENSG00000130640			Tubgcp2 (MGI:1921487)
chr10	133325422	133336982	10q26.3	10q26.3	604647	CALY, DRD1IP	Calcyon neuron-specific vesicular protein	CALY	50632	ENSG00000130643			Caly (MGI:1915816)
chr10	133347339	133352682	10q26.3	10q26.3	609776	PRAP1	Proline-rich acidic protein 1	PRAP1	118471	ENSG00000165828			Prap1 (MGI:893573)
chr10	133352772	133358030	10q26.3	10q26.3	617725	FUOM, FUCU	Fucose mutarotase	FUOM	282969	ENSG00000148803			Fuom (MGI:1916314)
chr10	133362479	133373403	10q26.2-q26.3	10q26.3	602292	ECHS1, SCEH, ECHS1D	Enoyl-CoA hydratase, short-chain, 1, mitochondrial	ECHS1	1892	ENSG00000127884		Mitochondrial short-chain enoyl-CoA hydratase 1 deficiency, 616277 (3), Autosomal recessive	Echs1 (MGI:2136460)
chr10	133379236	133391695	10q26.3	10q26.3	615853	PAOX, PAO	Polyamine oxidase	PAOX	196743	ENSG00000148832			Paox (MGI:1916983)
chr10	133420665	133424616	10q26.3	10q26.3	610447	SPRN, SHADOO, SHO	Shadow of prion protein	SPRN	503542	ENSG00000203772			Sprn (MGI:3582583)
chr10	133527362	133539115	10q24.3-qter	10q26.3	124040	CYP2E, CYP2E1, P450C2E	Cytochrome P450, subfamily IIE, ethanol-inducible	CYP2E1	1571	ENSG00000130649			Cyp2e1 (MGI:88607)
chr10	133553899	133568274	10q26.3	10q26.3	611486	SYCE1, POF12, SPGF15	Synaptonemal complex central element protein 1	SYCE1	93426	ENSG00000171772	mutation identified in 1 POF12 and 1 SPGF15 family	?Premature ovarian failure 12, 616947 (3), Autosomal recessive; ?Spermatogenic failure 15, 616950 (3), Autosomal recessive	Syce1 (MGI:1921325)
chr11	0	31000000	11p15-p14		606528	DEL11p15p14, C11DELp15p14	Chromosome 11p15-p14 deletion syndrome (homozygous)				contiguous gene deletion syndrome	Chromosome 11p15-p14 deletion syndrome, 606528 (4), Autosomal recessive	
chr11	0	22000000	11p15		611010	GINGF4, HGF4, GGF4	Fibromatosis, gingival, 4	GINGF4	100124414		between D11S1984 and D11S1338	Fibromatosis, gingival, 4, 611010 (2)	
chr11	0	53400000	11p		604499	HYPLIP2	Hyperlipidemia, combined, 2		28515			Hyperlipidemia, combined, 2, 604499 (2)	
chr11	0	22000000	11p15		235000	IH, HHP	Hemihyperplasia, isolated		100188864		epigenetic or uniparental disomy	Hemihypertrophy, 235000 (2), Autosomal dominant	
chr11	0	2800000	11p15.5		147510	IRDN, ILPR	Insulin-related DNA polymorphism (insulin-related VNTR)						
chr11	0	22000000	11p15		609470	LVNC2	Left ventricular noncompaction 2		619411		max lod at D11S902	Left ventricular noncompaction 2, 609470 (2)	
chr11	0	22000000	11p15		616792	NBLST7	Neuroblastoma, susceptibility to, 7		107181289		associated with rs2168101	{Neuroblastoma, susceptibility to, 7}, 616792 (2)	
chr11	0	53400000	11p		600165	NNO1	Nanophthalmos 1	NNO1	23691			Nanophthalmos-1, 600165 (2), Autosomal dominant	
chr11	0	2800000	11p15.5		607967	SLEN3	Systemic lupus erythematosus with nephritis, susceptibility to, 3	SLEN3	282849			{Systemic lupus erythematosus with nephritis, susceptibility to, 3}, 607967 (2)	
chr11	0	48800000	11pter-p11.2		186710	TP250	T-cell activation antigen p250						
chr11	187880	194574	11p15.5	11p15.5	610176	SCGB1C1, RYD5	Secretoglobin, family 1C, member 1	SCGB1C1	147199	ENSG00000188076			
chr11	196760	200257	11p15.5	11p15.5	608356	ODF3, SHIPPO1	Outer dense fiber of sperm tails 3	ODF3	113746	ENSG00000177947			Odf3 (MGI:1916537)
chr11	202923	207421	11p15.5	11p15.5	615417	BET1L, GS15	BET1-like protein	BET1L	51272	ENSG00000177951			Bet1l (MGI:1913128)
chr11	207510	215174	11p15.5	11p15.5	609146	RIC8A	Ric8, C. elegans, homolog of, A	RIC8A	60626	ENSG00000177963			Ric8a (MGI:2141866)
chr11	215029	236949	11p15.5	11p15.5	604481	SIRT3, SIR2L3	Sirtuin, S. cerevisiae, homolog 3	SIRT3	23410	ENSG00000142082			Sirt3 (MGI:1927665)
chr11	236807	252983	11p15.5	11p15.5	603481	PSMD13, S11	Proteasome 26S subunit, non-ATPase, 13	PSMD13	5719	ENSG00000185627			Psmd13 (MGI:1345192)
chr11	278364	285941	11p15.5	11p15.5	609650	NALP6, PYPAF5	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 6	NLRP6	171389	ENSG00000174885			Nlrp6 (MGI:2141990)
chr11	287759	295687	11p15.5	11p15.5	617032	PGGHG, ATHL1	Protein-glucosylgalactosylhydroxylysine glucosidase	PGGHG	80162	ENSG00000142102			Pgghg (MGI:2444047)
chr11	298199	299525	11p15.5	11p15.5	614757	IFITM5, OI5	Interferon-induced transmembrane protein 5	IFITM5	387733	ENSG00000206013		Osteogenesis imperfecta, type V, 610967 (3), Autosomal dominant	Ifitm5 (MGI:1934923)
chr11	308106	309409	11p15.5	11p15.5	605578	IFITM2	Interferon-induced transmembrane protein 1	IFITM2	10581	ENSG00000185201			Ifitm2 (MGI:1933382)
chr11	313990	315271	11p15.5	11p15.5	604456	IFITM1, IFI17, LEU13	Interferon-induced transmembrane protein 1	IFITM1	8519				
chr11	319672	320913	11p15.5	11p15.5	605579	IFITM3	Interferon-induced transmembrane protein 3	IFITM3	10410	ENSG00000142089		{Influenza, severe, susceptibility to}, 614680 (3)	Ifitm3 (MGI:1913391)
chr11	392598	404907	11p15	11p15.5	605561	PKP3	Plakophilin-3	PKP3	11187	ENSG00000184363			Pkp3 (MGI:1891830)
chr11	405715	417453	11p15.5	11p15.5	605478	SIGIRR	Single immunoglobulin domain-containing IL1R-related protein	SIGIRR	59307	ENSG00000185187			Sigirr (MGI:1344402)
chr11	448214	491399	11p15.5	11p15.5	612793	PTDSS2, PSS2	Phosphatidylserine synthase 2	PTDSS2	81490	ENSG00000174915			Ptdss2 (MGI:1351664)
chr11	494511	507282	11p15.5	11p15.5	173320	RNH1, RNH	Ribonuclease/angiogenin inhibitor 1	RNH1	6050	ENSG00000023191			Rnh1 (MGI:1195456)
chr11	532241	535566	11p15.5	11p15.5	190020	HRAS	Harvey rat sarcoma viral (v-Ha-ras) oncogene homolog	HRAS	3265	ENSG00000174775	pseudogene HRASP on X	{Bladder cancer, somatic}, 109800 (3); Congenital myopathy with excess of muscle spindles, 218040 (3), Autosomal dominant, Isolated cases; Costello syndrome, 218040 (3), Autosomal dominant, Isolated cases; {Nevus sebaceous or woolly hair nevus, somatic}, 162900 (3); Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic, 163200 (3); {Spitz nevus or nevus spilus, somatic}, 137550 (3); {Thyroid carcinoma, follicular, somatic}, 188470 (3)	Hras (MGI:96224)
chr11	560970	564024	11p15.5	11p15.5	143023	RASSF7, C11orf13, HRC1	RAS association domain family, member 7	RASSF7	8045	ENSG00000099849	29kb 5' to HRAS1; divergently transcribed		Rassf7 (MGI:1914235)
chr11	568088	568197	11p15.5	11p15.5	612982	MIR210, MIRN210	Micro RNA 210	MIR210	406992				
chr11	576445	612221	11p15.5	11p15.5	611780	PHRF1, KIAA1542	PHD and RING finger domain-containing protein 1	PHRF1	57661	ENSG00000070047			Phrf1 (MGI:2141847)
chr11	612554	615998	11p15.5	11p15.5	605047	IRF7, IRF7A, IRF7B, IRF7C, IRF7H, IMD39	Interferon regulatory factor 7	IRF7	3665	ENSG00000185507	mutation identified in 1 family	?Immunodeficiency 39, 616345 (3), Autosomal recessive	Irf7 (MGI:1859212)
chr11	616564	625066	11p15.5	11p15.5	606839	CDHR5, MUCDHL	Cadherin-related family, member 5	CDHR5	53841	ENSG00000099834			Cdhr5 (MGI:1919290)
chr11	626094	627691	11p15.5	11p15.5	182099	SCT	Secretin	SCT	6343	ENSG00000070031			
chr11	637304	640705	11p15.5	11p15.5	126452	DRD4	Dopamine receptor D4	DRD4	1815	ENSG00000069696	proximal to HRAS	{Attention deficit-hyperactivity disorder}, 143465 (3), Autosomal dominant; Autonomic nervous system dysfunction (3); [Novelty seeking personality], 601696 (1), ?Autosomal dominant	Drd4 (MGI:94926)
chr11	644219	695753	11p15.5	11p15.5	602635	DEAF1, SPN, ZMYND5, MRD24	Deaf1, Drosophila, homolog of	DEAF1	10522	ENSG00000177030	mutation identified in 1 DYSEIDD family	?Dyskinesia, seizures, and intellectual developmental disorder, 617171 (3), Autosomal recessive; Mental retardation, autosomal dominant 24, 615828 (3), Autosomal dominant	Deaf1 (MGI:1858496)
chr11	706119	727726	11p15	11p15.5	614988	EPS8L2, EPS8R2, DFNB106	EPS8-like protein 2	EPS8L2	64787	ENSG00000177106		Deafness autosomal recessive 106, 617637 (3), Autosomal recessive	Eps8l2 (MGI:2138828)
chr11	747431	765023	11p15.5-p15.4	11p15.5	602063	TALDO1	Transaldolase-1	TALDO1	6888	ENSG00000177156	pseudogene on chr.1	Transaldolase deficiency, 606003 (3), Autosomal recessive	Taldo1 (MGI:1274789)
chr11	787109	790125	11p15.5	11p15.5	608213	CEND1, BM88	Cell cycle exit and neuronal differentiation 1	CEND1	51286	ENSG00000184524			Cend1 (MGI:1929898)
chr11	790474	798280	11p15.5	11p15.5	609302	SLC25A22, GC1, EIEE3	Solute carrier family 25 (mitochondrial carrier, glutamate), member 22	SLC25A22	79751	ENSG00000177542		Epileptic encephalopathy, early infantile, 3, 609304 (3), Autosomal recessive	Slc25a22 (MGI:1915517)
chr11	799178	809866	11p15.5	11p15.5	605247	PIDD1, LRDD	p53-induced death domain protein 1	PIDD1	55367	ENSG00000177595			Pidd1 (MGI:1889507)
chr11	809935	812875	11p15.5	11p15.5	180530	RPLP2	Ribosomal phosphoprotein, large, P2	RPLP2	6181	ENSG00000177600			Rplp2 (MGI:1914436)
chr11	818889	825572	11p15.5	11p15.5	609059	PNPLA2, TTS2, ATGL	Patatin-like phospholipase domain-containing protein 2	PNPLA2	57104	ENSG00000177666		Neutral lipid storage disease with myopathy, 610717 (3), Autosomal recessive	Pnpla2 (MGI:1914103)
chr11	825557	831990	11p15.5	11p15.5	614177	EFCAB4A, CRACR2B	EF-hand calcium-binding domain-containing protein 4A	CRACR2B	283229	ENSG00000177685			Cracr2b (MGI:2446129)
chr11	832951	838834	11p15.5	11p15.5	602243	CD151, PETA3, SFA1, MER2	CD151 antigen	CD151	977	ENSG00000177697		[Blood group, Raph], 179620 (3); Nephropathy with pretibial epidermolysis bullosa and deafness, 609057 (3)	Cd151 (MGI:1096360)
chr11	839720	842528	11p15	11p15.5	601189	POLR2L, RPB10	Polymerase II, RNA, subunit L	POLR2L	5441	ENSG00000177700			Polr2l (MGI:1913741)
chr11	842823	867115	11p15.5	11p15.5	602644	TSPAN4, TM4SF7, NAG2	Tetraspanin 4	TSPAN4	7106	ENSG00000214063			Tspan4 (MGI:1928097)
chr11	867858	915057	11p15.5	11p15.5	615692	CHID1, SICLP	Chitinase domain-containing protein 1	CHID1	66005	ENSG00000177830			Chid1 (MGI:1915288)
chr11	925808	1012244	11p15.5	11p15.5	607242	AP2A2, KIAA0899	Adaptor-related protein complex 2, alpha-2 subunit	AP2A2	161	ENSG00000183020			Ap2a2 (MGI:101920)
chr11	1012823	1036705	11p15.5-p15.4	11p15.5	158374	MUC6	Mucin 6, gastric	MUC6	4588	ENSG00000184956	order: tel-HRAS-MUC6-MUC2-MUC5AC-MUC5B-IGF2-cen		Muc6 (MGI:2663233)
chr11	1074874	1110507	11p15.5	11p15.5	158370	MUC2	Mucin 2, intestinal/tracheal	MUC2	4583	ENSG00000198788			Muc2 (MGI:1339364)
chr11	1157952	1201137	11p15.5	11p15.5	158373	MUC5AC, MUC5	Mucin 5, subtypes A and C, tracheobronchial/gastric	MUC5AC	4586	ENSG00000215182			Muc5ac (MGI:104697)
chr11	1223064	1262175	11p15	11p15.5	600770	MUC5B	Mucin 5, subtype B, tracheobronchial	MUC5B	727897	ENSG00000117983		{Pulmonary fibrosis, idiopathic, susceptibility to}, 178500 (3), Autosomal dominant	Muc5b (MGI:1921430)
chr11	1274367	1309661	11p15.5	11p15.5	606277	TOLLIP	Toll-interacting protein	TOLLIP	54472	ENSG00000078902			Tollip (MGI:1891808)
chr11	1389898	1462688	11p15.5	11p15.5	609236	BRSK2, SAD1, PEN11B	BR serine/threonine kinase 2	BRSK2	9024	ENSG00000174672			Brsk2 (MGI:1923020)
chr11	1469447	1486778	11p15.5	11p15.5	611969	HCCA2	HCCA2 gene	MOB2	81532	ENSG00000182208			Mob2 (MGI:1919891)
chr11	1554050	1572838	11p15.5	11p15.5	602038	DUSP8, HVH8	Dual specificity phosphatase-8	DUSP8	1850	ENSG00000184545	pseudogene on 10q11.2		Dusp8 (MGI:106626)
chr11	1584341	1585282	11p15.5	11p15.5	148022	KRTAP5-1, KRN1L	Keratin associated protein 5-1	KRTAP5-1	387264	ENSG00000205869			
chr11	1752751	1763991	11p15.5	11p15.5	116840	CTSD, CPSD, CLN10	Cathepsin D (lysosomal aspartyl protease)	CTSD	1509	ENSG00000117984		Ceroid lipofuscinosis, neuronal, 10, 610127 (3), Autosomal recessive	Ctsd (MGI:88562)
chr11	1827483	1837520	11p15.5	11p15.5	607719	SYT8	Synaptotagmin 8	SYT8	90019	ENSG00000149043			Syt8 (MGI:1859867)
chr11	1839002	1841679	11p15.5	11p15.5	191043	TNNI2, AMCD2B, DA2B, FSSV	Troponin I, fast-twitch skeletal muscle isoform	TNNI2	7136	ENSG00000130598		Arthrogryposis multiplex congenita, distal, type 2B, 601680 (3), Autosomal dominant	Tnni2 (MGI:105070)
chr11	1852969	1892262	11p15.5	11p15.5	153432	LSP1	Lymphocyte-specific protein pp52	LSP1	4046	ENSG00000130592			Lsp1 (MGI:96832)
chr11	1919550	1938705	11p15.5	11p15.5	600692	TNNT3, AMCD2B, DA2B, FSSV	Troponin-T3, skeletal, fast	TNNT3	7140	ENSG00000130595		Arthrogryposis, distal, type 2B, 601680 (3), Autosomal dominant	Tnnt3 (MGI:109550)
chr11	1947271	2013175	11p15.5	11p15.5	600789	RPL23L, L23MRP, MRPL23	Ribosomal protein L23-like (L23 mitochondrial-related protein)	MRPL23	6150	ENSG00000214026			Mrpl23 (MGI:1196612)
chr11	1995175	2001465	11p15.5	11p15.5	103280	H19, D11S813E, ASM1, BWS, WT2	H19 gene	H19	283120		same 200kb fragment as IGF2	Beckwith-Wiedemann syndrome, 130650 (3), Autosomal dominant; Silver-Russell syndrome, 180860 (3), Isolated cases; Wilms tumor 2, 194071 (3), Autosomal dominant, Somatic mutation	
chr11	1996758	1996830	11p15.5	11p15.5	615509	MIR675	Micro RNA 675	MIR675	100033819				
chr11	1998744	2003508	11p15.5	11p15.5	616186	ICR1	H19-IGF2-imprinting control region		105259599			Beckwith-Wiedemann syndrome, 130650 (3), Autosomal dominant	
chr11	2129111	2149602	11p15.5	11p15.5	147470	IGF2, GRDF	Insulin-like growth factor-2, or somatomedin A	IGF2	3481	ENSG00000167244	mutation identified in 1 GRDF family	?Growth restriction, severe, with distinctive facies, 616489 (3), Autosomal dominant	Igf2 (MGI:96434)
chr11	2140511	2148665	11p15.5	11p15.5	610146	IGF2AS, PEG8	Insulin-like growth factor II, antisense	IGF2-AS	51214				
chr11	2159778	2161208	11p15.5	11p15.5	176730	INS, MODY10, IDDM2	Insulin	INS	3630	ENSG00000254647	5'--INS-12.6kb-IGF2--3'; cen-HBBC-10cM-INS-2cM-HRAS1-3cM-TH	Diabetes mellitus, insulin-dependent, 2, 125852 (3), Autosomal dominant; Diabetes mellitus, permanent neonatal, 606176 (3), Autosomal recessive, Autosomal dominant; Hyperproinsulinemia, 616214 (3), Autosomal dominant; Maturity-onset diabetes of the young, type 10, 613370 (3), Autosomal dominant	Ins2 (MGI:96573)
chr11	2163928	2174080	11p15.5	11p15.5	191290	TH, TYH	Tyrosine hydroxylase	TH	7054	ENSG00000180176	distal to HRAS1	Segawa syndrome, recessive, 605407 (3), Autosomal recessive	Th (MGI:98735)
chr11	2268497	2270951	11p15.5	11p15.5	601886	ASCL2	Achaete-scute complex, Drosophila, homolog-like 2	ASCL2	430	ENSG00000183734			Ascl2 (MGI:96920)
chr11	2295639	2303048	11p15.5	11p15.5	611033	C11orf21	Chromosome 11 open reading frame 21	C11orf21	29125	ENSG00000110665			
chr11	2299479	2318200	11p15.5	11p15.5	603853	TSPAN32, PHEMX, TSSC6	Tetraspanin 32	TSPAN32	10077	ENSG00000064201	not imprinted		Tspan32 (MGI:1350360)
chr11	2376176	2397418	11p	11p15.5	186845	CD81, TAPA1, CVID6	CD81 antigen (target of antiproliferative antibody-1)	CD81	975	ENSG00000110651		Immunodeficiency, common variable, 6, 613496 (3), Autosomal recessive	Cd81 (MGI:1096398)
chr11	2398411	2403877	11p15.5	11p15.5	603852	TSSC4	Tumor-suppressing subchromosomal transferable fragment cDNA 4	TSSC4	10078	ENSG00000184281	not imprinted		Tssc4 (MGI:1861712)
chr11	2403961	2423423	11p15.5	11p15.5	604600	TRPM5, MTR1	Transient receptor potential cation channel, subfamily M, member 5 (MLSN1- and TRP-related gene 1)	TRPM5	29850	ENSG00000070985	maternal allele imprinted		Trpm5 (MGI:1861718)
chr11	2444990	2849109	11p15.5	11p15.5-p15.4	607542	KCNQ1, KCNA9, LQT1, KVLQT1, ATFB3, SQT2	Potassium voltage-gated channel, KQT-like subfamily, member 1	KCNQ1	3784	ENSG00000053918		Atrial fibrillation, familial, 3, 607554 (3), Autosomal dominant; Jervell and Lange-Nielsen syndrome, 220400 (3), Autosomal recessive; Long QT syndrome 1, 192500 (3), Autosomal dominant; {Long QT syndrome 1, acquired, susceptibility to}, 192500 (3), Autosomal dominant; Short QT syndrome 2, 609621 (3), Autosomal dominant	Kcnq1 (MGI:108083)
chr11	2608327	2699997	11p15.5	11p15.5	604115	KCNQ1OT1, LIT1	KCNQ1-overlapping transcript 1	KCNQ1OT1	10984			Beckwith-Wiedemann syndrome, 130650 (3), Autosomal dominant	
chr11	2800000	11700000	11p15.4		616121	GVINP1, VLIG1	GTPase, very large interferon-inducible, pseudogene 1	GVINP1	387751				
chr11	2870032	2872104	11p15.5	11p15.4	610980	KCNQ1DN	KCNQ1 downstream neighbor	KCNQ1DN	55539				
chr11	2883217	2885803	11p15.5	11p15.4	600856	CDKN1C, KIP2, BWS, IMAGE	Cyclin-dependent kinase inhibitor 1C (p57, Kip2)	CDKN1C	1028	ENSG00000129757	rare cause of BWS	Beckwith-Wiedemann syndrome, 130650 (3), Autosomal dominant; IMAGE syndrome, 614732 (3), Autosomal dominant	
chr11	2887343	2905503	11p15.5	11p15.4	603240	SLC22A1LS, ORCTL2S, BWSCR1B	Solute carrier family 22, member 1-like-antisense	SLC22A18AS	5003	ENSG00000254827			
chr11	2899720	2925245	11p15.5	11p15.4	602631	SLC22A1L, BWSCR1A, IMPT1	Solute carrier family 22, member 1-like (Beckwith-Wiedemann region 1A; organic-cation transporter-like 2)	SLC22A18	5002	ENSG00000110628		Breast cancer, somatic, 114480 (3); Lung cancer, somatic, 211980 (3); Rhabdomyosarcoma, somatic, 268210 (3)	Slc22a18 (MGI:1336884)
chr11	2928272	2929419	11p15.5	11p15.4	602131	PHLDA2, TSSC3, IPL, BRW1C	Pleckstrin homology-like domain, family A, member 2	PHLDA2	7262	ENSG00000181649			Phlda2 (MGI:1202307)
chr11	2944429	2992376	11p15.5	11p15.4	601651	NAP1L4, NAP2L, NAP2	Nucleosome assembly protein 1-like 4	NAP1L4	4676	ENSG00000205531			Nap1l4 (MGI:1316687)
chr11	3000921	3057450	11p15.5	11p15.4	123859	CARS	Cysteinyl-tRNA synthetase	CARS	833	ENSG00000110619			Cars (MGI:1351477)
chr11	3087115	3165351	11p15.4	11p15.4	606733	OSBPL5, ORP5, KIAA1534	Oxysterol-binding protein-like protein 5	OSBPL5	114879	ENSG00000021762			Osbpl5 (MGI:1930265)
chr11	3217943	3218812	11p15.5	11p15.4	607234	MRGPRG, MRGG	MAS-related G protein-coupled receptor family, member G	MRGPRG	386746	ENSG00000182170			Mrgprg (MGI:3033145)
chr11	3227652	3232385	11p15.4	11p15.4	607232	MRGPRE, MRGE	Mas-related G protein-coupled receptor family, member E	MRGPRE	116534	ENSG00000184350			Mrgpre (MGI:2441884)
chr11	3357926	3379221	11p15.5	11p15.4	602187	ZNF195	Zinc finger protein-195	ZNF195	7748	ENSG00000005801			
chr11	3380960	3409147	11p15.5	11p15.4	608999	TSSC2	Tumor-suppressing subtransferable fragment candidate gene 2	TSSC2	650368				
chr11	3638502	3642391	11p15	11p15.4	610625	ART5	ADP-ribosyltransferase 5	ART5	116969	ENSG00000167311			Art5 (MGI:107948)
chr11	3645109	3665515	11p15	11p15.4	601625	ART1	ADP-ribosyltransferase 1	ART1	417	ENSG00000129744			Art1 (MGI:107511)
chr11	3665586	3673628	11p15.5	11p15.4	606372	CHRNA10	Cholinergic receptor, neuronal nicotinic, alpha polypeptide 10	CHRNA10	57053	ENSG00000129749			Chrna10 (MGI:3609260)
chr11	3675009	3797791	11p15	11p15.4	601021	NUP98	Nucleoporin, 98kD	NUP98	4928	ENSG00000110713	fused with HOXA9, NSD1, NSD3, PMX1, HOXC13, DDX10, TOP1, HOXD11 in myeloid leukemia		Nup98 (MGI:109404)
chr11	3797723	3826370	11p15.5	11p15.4	615187	PGAP2, FRAG1, HPMRS3, MRT17, MRT21	Post-GPI attachment to proteins 2	PGAP2	27315	ENSG00000148985		Hyperphosphatasia with mental retardation syndrome 3, 614207 (3), Autosomal recessive	
chr11	3826977	3840982	11p15.5-p15.4	11p15.4	179505	ARHG	ras homolog gene family, member G (rho G)	RHOG	391	ENSG00000177105			Rhog (MGI:1928370)
chr11	3855702	4093209	11p15.5	11p15.4	605921	STIM1, TAM1, IMD10, STRMK	Stromal interaction molecule 1	STIM1	6786	ENSG00000167323		Immunodeficiency 10, 612783 (3), Autosomal recessive; Myopathy, tubular aggregate, 1, 160565 (3), Autosomal dominant; Stormorken syndrome, 185070 (3), Autosomal dominant	Stim1 (MGI:107476)
chr11	4094684	4138924	11p15.5	11p15.4	180410	RRM1	Ribonucleotide reductase, M1 polypeptide	RRM1	6240	ENSG00000167325			Rrm1 (MGI:98180)
chr11	4384896	4393695	11p15.5	11p15.4	109092	TRIM21, SSA1, RO52	Tripartite motif-containing protein 21	TRIM21	6737	ENSG00000132109			Trim21 (MGI:106657)
chr11	4598671	4608258	11p15.4	11p15.4	613184	TRIM68, SS56, GC109	Tripartite motif-containing protein 68	TRIM68	55128	ENSG00000167333	incorrectly assigned to 2p24 by FISH		Trim68 (MGI:2142077)
chr11	4643925	4655487	11p15.4	11p15.4	611267	OR51E1, DGPCR, PSGR2	Olfactory receptor, family 51, subfamily E, member 1	OR51E1	143503	ENSG00000180785			Olfr558 (MGI:3030392)
chr11	4680170	4697845	11p15.4	11p15.4	611268	OR51E2, PSGR	Olfactory receptor, family 51, subfamily E, member 2	OR51E2	81285	ENSG00000167332			Olfr78 (MGI:2157548)
chr11	4988190	4992428	11p15	11p15.4	605470	MMP26	Matrix metalloproteinase 26 (matrilysin 2)	MMP26	56547	ENSG00000167346			
chr11	5225465	5227070	11p15.5	11p15.4	141900	HBB	Hemoglobin beta	HBB	3043	ENSG00000244734	pseudogene HBBP1 between HBG and HBD loci	Delta-beta thalassemia, 141749 (3), Autosomal dominant; Erythremias, beta- (3); Heinz body anemias, beta-, 140700 (3), Autosomal dominant; Hereditary persistence of fetal hemoglobin, 141749 (3), Autosomal dominant; {Malaria, resistance to}, 611162 (3); Methemoglobinemias, beta- (3); Sickle cell anemia, 603903 (3), Autosomal recessive; Thalassemia-beta, dominant inclusion-body, 603902 (3); Thalassemias, beta-, 613985 (3)	Hbb-bt,Hbb-bs (MGI:5474850,MGI:5474852)
chr11	5232828	5234627	11p15.5	11p15.4	142000	HBD	Hemoglobin delta	HBD	3045	ENSG00000223609		Thalassemia due to Hb Lepore (3); Thalassemia, delta- (3)	
chr11	5244553	5245545	11p15.4	11p15.4	616308	BGLT3, LINC01083	Beta-globin locus transcript 3, noncoding	BGLT3	103344929				
chr11	5248271	5249856	11p15.5	11p15.4	142200	HBG1	Hemoglobin, gamma A	HBG1	3047	ENSG00000213934		Fetal hemoglobin quantitative trait locus 1, 141749 (3), Autosomal dominant	
chr11	5253190	5254780	11p15.5	11p15.4	142250	HBG2, TNCY	Hemoglobin, gamma G	HBG2	3048	ENSG00000196565		Cyanosis, transient neonatal, 613977 (3), Autosomal dominant; Fetal hemoglobin quantitative trait locus 1, 141749 (3), Autosomal dominant	Hbb-y (MGI:96027)
chr11	5268349	5270142	11p15.5	11p15.4	142100	HBE1	Hemoglobin epsilon	HBE1	3046	ENSG00000213931			Hbb-bh1 (MGI:96024)
chr11	5269924	5304185	11p15.5	11p15.4	152424	LCRB	Locus control region beta		109580095			Thalassemia, Hispanic gamma-delta-beta, 613985 (3)	
chr11	5507299	5509984	11p15	11p15.4	605473	UBQLN3	Ubiquilin 3	UBQLN3	50613	ENSG00000175520			Ubqln3 (MGI:3045291)
chr11	5590905	5685108	11p15	11p15.4	608487	TRIM5, RNF88	Tripartite motif-containing protein 5	TRIM5	85363	ENSG00000132256			Trim5,Trim12c (MGI:4821183,MGI:3646853)
chr11	5596100	5612957	11p15	11p15.4	607564	TRIM6	Tripartite motif-containing protein 6	TRIM6	117854	ENSG00000121236			Trim6 (MGI:2137352)
chr11	5619943	5644397	11p15.4-p15.3	11p15.4	605684	TRIM34, RNF21, IFP1	Tripartite motif-containing 34 (RING finger protein-21)	TRIM34	53840	ENSG00000258659			
chr11	5689586	5710862	11p15	11p15.4	606559	TRIM22, STAF50	Tripartite motif-containing protein 22	TRIM22	10346	ENSG00000132274			
chr11	6259673	6272126	11p15.5-p15.4	11p15.4	118445	CCKBR, GASR	Cholecystokinin B receptor	CCKBR	887	ENSG00000110148			Cckbr (MGI:99479)
chr11	6390413	6394997	11p15.4-p15.1	11p15.4	607608	SMPD1, NPD	Sphingomyelin phosphodiesterase-1, acid lysosomal	SMPD1	6609	ENSG00000166311		Niemann-Pick disease, type A, 257200 (3), Autosomal recessive; Niemann-Pick disease, type B, 607616 (3), Autosomal recessive	Smpd1 (MGI:98325)
chr11	6395123	6419829	11p15	11p15.4	602709	APBB1, FE65	Amyloid beta A4 precursor protein-binding, family B, member-1	APBB1	322	ENSG00000166313			Apbb1 (MGI:107765)
chr11	6431037	6441023	11p15.5-p15.4	11p15.4	142290	HPX	Hemopexin	HPX	3263	ENSG00000110169			Hpx (MGI:105112)
chr11	6448612	6474458	11p15.4	11p15.4	605493	TRIM3, RNF22, BERP	Tripartite motif-containing 3	TRIM3	10612	ENSG00000110171			Trim3 (MGI:1860040)
chr11	6474682	6481478	11p15.4	11p15.4	601638	ARFIP2, POR1	ADP-ribosylation factor-interacting protein 2	ARFIP2	23647	ENSG00000132254			Arfip2 (MGI:1924182)
chr11	6481446	6484680	11p15.5-p15.2	11p15.4	607388	FXC1, TIMM10B	Fracture callus 1, rat, homolog of	TIMM10B	26515	ENSG00000132286			Timm10b (MGI:1315196)
chr11	6497295	6572024	11p15.4	11p15.4	617277	DHND1, FLJ00251	Dynein heavy chain domain 1	DNHD1	144132	ENSG00000179532			Dnhd1 (MGI:1924755)
chr11	6514829	6603677	11p15.4	11p15.4	615818	RRP8, NML, KIAA0409	Ribosomal RNA processing protein 8, homolog of	RRP8	23378	ENSG00000132275			Rrp8 (MGI:1914251)
chr11	6603707	6610873	11p15.5-p15.4	11p15.4	602366	ILK, P59	Integrin-linked kinase	ILK	3611	ENSG00000166333			Ilk (MGI:1195267)
chr11	6610816	6612243	11p15.3	11p15.4	600475	TAF10, TAF2H, TAF2A	TAF10 RNA polymerase II, TATA box-binding protein-associated factor, 30kD	TAF10	6881	ENSG00000166337			Taf10 (MGI:1346320)
chr11	6612765	6619460	11p15.5	11p15.4	607998	TPP1, CLN2, SCAR7	Tripeptidyl peptidase 1	TPP1	1200	ENSG00000166340		Ceroid lipofuscinosis, neuronal, 2, 204500 (3), Autosomal recessive; Spinocerebellar ataxia, autosomal recessive 7, 609270 (3), Autosomal recessive	Tpp1 (MGI:1336194)
chr11	6621323	6655848	11p15.4	11p15.4	603057	DCHS1, PCDH16, FIB1, CDH19, VMLDS1, MVP2	Dachsous, Drosophila, homolog of, 1	DCHS1	8642	ENSG00000166341		Mitral valve prolapse 2, 607829 (3), Autosomal dominant; Van Maldergem syndrome 1, 601390 (3), Autosomal recessive	Dchs1 (MGI:2685011)
chr11	6680384	6683400	11p15.5-p15.4	11p15.4	611830	MRPL17	Mitochondrial ribosomal protein L17	MRPL17	63875	ENSG00000158042			Mrpl17 (MGI:1351608)
chr11	6794524	6795907	11p15	11p15.4	608495	OR6A2, OR6A1	Olfactory receptor, family 6, subfamily A, member 2	OR6A2	8590	ENSG00000184933			Olfr2 (MGI:97432)
chr11	6845682	6846635	11p15.4	11p15.4	608493	OR10A1	Olfactory receptor, family 10, subfamily A, member 1	OR10A5	144124	ENSG00000166363			Olfr713 (MGI:3030547)
chr11	6891573	6892499	11p15.4	11p15.4	608494	OR2D2	Olfactory receptor, family 2, subfamily D, member 2	OR2D2	120776	ENSG00000166368			Olfr715,Olfr715b (MGI:3647188,MGI:3030549)
chr11	6926360	6991143	11p15.4	11p15.4	605016	ZNF215	Zinc finger protein-215	ZNF215	7762	ENSG00000149054			
chr11	6993481	7020366	11p15.4	11p15.4	605015	ZNF214	Zinc finger protein-214	ZNF214	7761	ENSG00000149050			
chr11	7020445	7089024	11p15.4	11p15.4	609665	NLRP1, NALP14, NOD5	NLR family, pyrin domain containing 1	NLRP14	338323	ENSG00000158077			Nlrp14 (MGI:1924108)
chr11	7088933	7091147	11p15	11p15.4	605444	RBMXL2, HNRNPGT, HNRPGT	RNA-binding motif protein, X chromosome, like 2	RBMXL2	27288	ENSG00000170748			Rbmxl2 (MGI:1923822)
chr11	7238783	7470031	11p15.4	11p15.4	613528	SYT9	Synaptotagmin 9	SYT9	143425	ENSG00000170743			Syt9 (MGI:1926373)
chr11	7665094	7678568	11p15.4	11p15.4	608342	CYB5R2	Cytochrome b5 reductase 2	CYB5R2	51700	ENSG00000166394			Cyb5r2 (MGI:2444415)
chr11	7959020	7965426	11p15	11p15.4	609662	NLRP10, NALP10, PYNOD, NOD8	NLR family, pyrin domain containing 10	NLRP10	338322	ENSG00000182261			Nlrp10 (MGI:2444084)
chr11	7987319	7996170	11p15.4	11p15.4	603914	EIF3F, EIF3S5	Eukaryotic translation initiation factor 3, subunit F	EIF3F	8665	ENSG00000175390			Eif3f (MGI:1913335)
chr11	8019179	8106106	11p15.4	11p15.4	601197	TUB, RDOB	Tubby, mouse, homolog of	TUB	7275	ENSG00000166402	mutation identified in 1 RDOB family	?Retinal dystrophy and obesity, 616188 (3), Autosomal recessive	Tub (MGI:2651573)
chr11	8092964	8169093	11p15.4	11p15.4	610509	RIC3	Resistance to inhibitors of cholinesterase 3, C. elegans, homolog of	RIC3	79608	ENSG00000166405			Ric3 (MGI:2443887)
chr11	8224303	8268634	11p15	11p15.4	186921	LMO1, RBTN1, RHOM1	LIM domain only 1 (rhombotin 1)	LMO1	4004	ENSG00000166407		Leukemia, T-cell acute lymphoblastic, 186921 (2)	Lmo1 (MGI:102812)
chr11	8335028	8594288	11p15.3	11p15.4	607670	STK33	Serine/threonine protein kinase 33	STK33	65975	ENSG00000130413			Stk33 (MGI:2152419)
chr11	8612036	8683216	11p15.4	11p15.4	612000	TRIM66, TIF1D, KIAA0298	Tripartite motif-containing protein 66	TRIM66	9866	ENSG00000166436			Trim66 (MGI:2152406)
chr11	8682447	8689871	11p15	11p15.4	603637	RPL27A	Ribosomal protein L27a	RPL27A	6157	ENSG00000166441			Rpl27a (MGI:1347076)
chr11	8685438	8685568	11p15.4	11p15.4	611333	SNORA3B, SNORA45	Small nucleolar RNA, H/ACA box 3B	SNORA3B	677826				
chr11	8693351	8910950	11p15	11p15.4	140750	ST5, HTS1	Suppression of tumorigenicity-5	ST5	6764	ENSG00000166444			St5 (MGI:108517)
chr11	8911116	8920078	11p15.3	11p15.4	609191	AKIP1, BCA3, C11orf17	Protein kinase A-interacting protein 1	AKIP1	56672	ENSG00000166452			Akip1 (MGI:3041226)
chr11	8980575	9004650	11p15.3	11p15.4	613125	NRIP3	Nuclear receptor-interacting protein 3	NRIP3	56675	ENSG00000175352			Nrip3 (MGI:1925843)
chr11	9019499	9091606	11p15.4	11p15.4	611747	SCUBE2	Signal peptide-, CUB domain-, and EGF-like domains-containing protein 2	SCUBE2	57758	ENSG00000175356			Scube2 (MGI:1928765)
chr11	9138824	9265325	11p15.4	11p15.4	617278	DENND5A, RAB6IP1, KIAA1091, EIEE49	DENN domain-containing protein 5A	DENND5A	23258	ENSG00000184014		Epileptic encephalopathy, early infantile, 49, 617281 (3), Autosomal recessive	Dennd5a (MGI:1201681)
chr11	9384621	9448126	Chr.11	11p15.4	605586	IPO7, RANBP7	Importin 7	IPO7	10527	ENSG00000205339			Ipo7 (MGI:2152414)
chr11	9460964	9528523	11p15.4-p15.3	11p15.4	603433	ZNF143, SBF	Zinc finger protein-143	ZNF143	7702	ENSG00000166478			Zfp143 (MGI:1277969)
chr11	9573680	9589766	11p15.3-p15.1	11p15.4	193525	WEE1	wee1+, S. pombe, homolog of	WEE1	7465	ENSG00000166483			Wee1 (MGI:103075)
chr11	9664076	9752990	11p15	11p15.4	604762	SWAP70	Switch-associated protein 70	SWAP70	23075	ENSG00000133789			Swap70 (MGI:1298390)
chr11	9778666	10294206	11p15	11p15.4	607697	SBF2, MTMR13, CMT4B2	SET binding factor 2 (myotubularin-related 13)	SBF2	81846	ENSG00000133812		Charcot-Marie-Tooth disease, type 4B2, 604563 (3), Autosomal recessive	Sbf2 (MGI:1921831)
chr11	10304979	10307401	11p15.4	11p15.4	103275	ADM	Adrenomedullin	ADM	133	ENSG00000148926			Adm (MGI:108058)
chr11	10450320	10507578	11pter-p13	11p15.4	102772	AMPD3	Adenosine monophosphate deaminase-3, isoform E	AMPD3	272	ENSG00000133805		[AMP deaminase deficiency, erythrocytic], 612874 (3), Autosomal recessive	Ampd3 (MGI:1096344)
chr11	10511677	10541226	11p15	11p15.4	616641	RNF141, ZNF230	RING finger protein 141	RNF141	50862	ENSG00000110315			Rnf141 (MGI:1914400)
chr11	10557865	10568817	Chr.11	11p15.4	605702	LYVE1	Lymphatic vessel endothelial hyaluronan receptor 1	LYVE1	10894	ENSG00000133800			Lyve1 (MGI:2136348)
chr11	10573090	10693987	11p15.4-p15.3	11p15.4	604673	MRVI1, IRAG	Murine retrovirus integration site 1, homolog of	MRVI1	10335	ENSG00000072952			Mrvi1 (MGI:1338023)
chr11	10750986	10779754	11p15.3	11p15.4	609366	SH2BP1, KIAA0155, p150	SH2 domain-binding protein 1	CTR9	9646	ENSG00000198730			Ctr9 (MGI:109345)
chr11	10797045	10809034	11p15	11p15.4	602325	EIF4G2, DAP5	Eukaryotic translation initiation factor 4G-like 1	EIF4G2	1982	ENSG00000110321			Eif4g2 (MGI:109207)
chr11	10852703	10858072	11p15.3	11p15.4	615251	ZBED5, BUSTER1	Zinc finger BED domain-containing protein 5	ZBED5	58486	ENSG00000236287			Zbed5 (MGI:1919220)
chr11	11270873	11622013	11p15.3	11p15.4	615136	GALNT18, GALNACT18, GALNTL4	UPD-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 18	GALNT18	374378	ENSG00000110328			Galnt18 (MGI:2446239)
chr11	11841422	11959324	11p15.3	11p15.3	614460	USP47	Ubiquitin-specific protease 47	USP47	55031	ENSG00000170242			Usp47 (MGI:1922246)
chr11	11962995	12009826	11p15.1	11p15.3	605416	DKK3, RIG	Dickkopf, Xenopus, homolog of, 3	DKK3	27122	ENSG00000050165			Dkk3 (MGI:1354952)
chr11	12110575	12263789	11p15.3	11p15.3	608881	MICAL2, KIAA0750	Microtubule-associated monooxygenase, calponin and LIM domains-containing 2	MICAL2	9645	ENSG00000133816			Mical2 (MGI:2444947)
chr11	12286899	12362139	11p15.3	11p15.3	612355	MICALCL, EBITEIN1	MICAL C terminus-like protein	MICALCL	84953	ENSG00000133816			Micalcl (MGI:1918127)
chr11	12376440	12535355	11p15	11p15.3	608120	PARVA	Parvin, alpha	PARVA	55742	ENSG00000197702			Parva (MGI:1931144)
chr11	12674421	12944736	11p15.2	11p15.3	189967	TEAD1, TCF13, REF1	TEA domain family member 1	TEAD1	7003	ENSG00000187079		Sveinsson chorioretinal atrophy, 108985 (3), Autosomal dominant	Tead1 (MGI:101876)
chr11	13009422	13012105	11p15.2	11p15.3	614713	RASSF10	Ras association domain family, member 10	RASSF10	644943	ENSG00000189431			Rassf10 (MGI:1925998)
chr11	13276551	13387267	11p15	11p15.3	602550	ARNTL, BMAL1, TIC	Aryl hydrocarbon receptor nuclear translocator-like	ARNTL	406	ENSG00000133794			Arntl (MGI:1096381)
chr11	13387995	13463296	11p15.2	11p15.3	615933	BTBD10	BTB/POZ domain-containing protein 10	BTBD10	84280	ENSG00000148925			Btbd10 (MGI:1916065)
chr11	13492044	13496174	11p15.3-p15.1	11p15.3	168450	PTH	Parathyroid hormone	PTH	5741	ENSG00000152266	~9cM distal to CALC1; distal to MYOD	Hypoparathyroidism, autosomal dominant, 146200 (3), Autosomal dominant; Hypoparathyroidism, autosomal recessive, 146200 (3), Autosomal dominant	Pth (MGI:97799)
chr11	13668658	13732345	11p15.2	11p15.3	616107	FAR1, MLSTD2, PFCRD	Fatty acyl CoA reductase 1	FAR1	84188	ENSG00000197601		Peroxisomal fatty acyl-CoA reductase 1 disorder, 616154 (3), Autosomal recessive	Far1 (MGI:1914670)
chr11	13962636	14268132	Chr.11	11p15.2	604989	SPON1	F-spondin, Rat, homolog of	SPON1	10418	ENSG00000262655			Spon1 (MGI:2385287)
chr11	14277919	14364505	11pter-p15.5	11p15.2	600098	RRAS2, TC21	Related Ras viral oncogene homolog 2	RRAS2	22800	ENSG00000133818		Ovarian carcinoma (3)	Rras2 (MGI:1914172)
chr11	14457502	14499894	11p15.2	11p15.2	600959	COPB1, COPB	Coatomer protein complex, subunit beta 1	COPB1	1315	ENSG00000129083			Copb1 (MGI:1917599)
chr11	14504875	14643633	11p15.1	11p15.2	602854	PSMA1, PROS30	Proteasome subunit, alpha-type, 1	PSMA1	5682	ENSG00000129084			Psma1 (MGI:1347005)
chr11	14643690	14874138	11p15	11p15.2	602047	PDE3B	Phosphodiesterase-3B, cGMP-inhibited	PDE3B	5140	ENSG00000152270			Pde3b (MGI:1333863)
chr11	14878004	14898914	11p15.2	11p15.2	608713	CYP2R1	Cytochrome P450, subfamily IIR, polypeptide 1 (vitamin D 25-hydroxylase)	CYP2R1	120227	ENSG00000186104		Rickets due to defect in vitamin D 25-hydroxylation, 600081 (3), Autosomal recessive	Cyp2r1 (MGI:2449771)
chr11	14966667	14972360	11p15.2-p15.1	11p15.2	114130	CALCA, CALC1	Calcitonin/calcitonin-related polypeptide, alpha	CALCA	796	ENSG00000110680	same 220kb fragment as CALCB		
chr11	15073599	15078630	11p15.2-p15.1	11p15.2	114160	CALCB, CALC2	Calcitonin-related polypeptide, beta	CALCB	797	ENSG00000175868			Calca (MGI:2151253)
chr11	15111415	15269674	11p15.2	11p15.2	610668	INSC	Inscuteable, Drosophila, homolog of	INSC	387755	ENSG00000188487			Insc (MGI:1917942)
chr11	15966448	16476387	11p15.3-p15.2	11p15.2	607257	SOX6	SRY-box 6	SOX6	55553	ENSG00000110693			Sox6 (MGI:98368)
chr11	16777296	17014422	11p15.1	11p15.2-p15.1	612686	PLEKHA7	Pleckstrin homology domain-containing protein, family A, member 7	PLEKHA7	144100	ENSG00000166689			Plekha7 (MGI:2445094)
chr11	17074391	17077672	11p	11p15.1	180476	RPS13	Ribosomal protein S13	RPS13	6207	ENSG00000110700			Rps13 (MGI:1915302)
chr11	17086574	17207995	11p15.1	11p15.1	603601	PIK3C2A, CPK	Phosphatidylinositol 3-kinase, class 2, alpha	PIK3C2A	5286	ENSG00000011405			Pik3c2a (MGI:1203729)
chr11	17260336	17349979	11p15-p14	11p15.1	608020	NUCB2, NEFA	Nucleobindin 2	NUCB2	4925	ENSG00000070081			Nucb2 (MGI:1858179)
chr11	17351761	17377320	11p15.1	11p15.1	613714	B7H6	B7 homolog 6	NCR3LG1	374383	ENSG00000188211			
chr11	17385245	17389330	11p15.1	11p15.1	600937	KCNJ11, BIR, PHHI, HHF2, TNDM3, MODY13	Potassium inwardly-rectifying channel, subfamily J, member 11	KCNJ11	3767	ENSG00000187486	4.5kb 3' of SUR	Diabetes mellitus, transient neonatal, 3, 610582 (3), Autosomal dominant; {Diabetes mellitus, type 2, susceptibility to}, 125853 (3), Autosomal dominant; Diabetes, permanent neonatal, with or without neurologic features, 606176 (3), Autosomal recessive, Autosomal dominant; Hyperinsulinemic hypoglycemia, familial, 2, 601820 (3), Autosomal recessive; Maturity-onset diabetes of the young, type 13, 616329 (3), Autosomal dominant	Kcnj11 (MGI:107501)
chr11	17392884	17476848	11p15.1	11p15.1	600509	ABCC8, SUR, PHHI, SUR1, HHF1, TNDM2	ATP-binding cassette, subfamily C, member 8 (sulfonylurea receptor)	ABCC8	6833	ENSG00000006071		Diabetes mellitus, noninsulin-dependent, 125853 (3), Autosomal dominant; Diabetes mellitus, permanent neonatal, 606176 (3), Autosomal recessive, Autosomal dominant; Diabetes mellitus, transient neonatal 2, 610374 (3); Hyperinsulinemic hypoglycemia, familial, 1, 256450 (3), Autosomal recessive, Autosomal dominant; Hypoglycemia of infancy, leucine-sensitive, 240800 (3), Autosomal dominant	Abcc8 (MGI:1352629)
chr11	17493894	17544415	11p15.1	11p15.1	605242	USH1C, DFNB18A	Harmonin (Usher syndrome 1C gene)	USH1C	10083	ENSG00000006611	Acadian and Samaritan variety	Deafness, autosomal recessive 18A, 602092 (3), Autosomal recessive; Usher syndrome, type 1C, 276904 (3), Autosomal recessive	Ush1c (MGI:1919338)
chr11	17547372	17645943	11p14.3	11p15.1	604487	OTOG, OTGN, DFNB18B	Otogelin	OTOG	340990	ENSG00000188162		Deafness, autosomal recessive 18B, 614945 (3), Autosomal recessive	Otog (MGI:1202064)
chr11	17719562	17722130	11p15.4	11p15.1	159970	MYOD1, MYF3	Myogenic factor-3	MYOD1	4654	ENSG00000129152	proximal to CALCA, HBB, BWS, PTH; ?11p14.3		Myod1 (MGI:97275)
chr11	17734809	17783054	11p15	11p15.1	176258	KCNC1, EPM7	Potassium voltage-gated channel, Shaw-related subfamily, member 1	KCNC1	3746	ENSG00000129159		Epilepsy, progressive myoclonic 7, 616187 (3), Autosomal dominant	Kcnc1 (MGI:96667)
chr11	17788047	18013161	11p14	11p15.1	606051	SERGEF, DELGEF	Secretion-regulating guanine nucleotide exchange factor	SERGEF	26297	ENSG00000129158			Sergef (MGI:1351630)
chr11	18020536	18040787	11p15.3-p14	11p15.1	191060	TPH1, TPH	Tryptophan hydroxylase 1 (tryptophan-5-monooxygenase)	TPH1	7166	ENSG00000129167			Tph1 (MGI:98796)
chr11	18120954	18138479	11p15.1	11p15.1	607229	MRGPRX3, MRGX3	Mas-related G protein-coupled receptor family, member X3	MRGPRX3	117195	ENSG00000179826			Mrgpra9,Mrgpra1,Mrgpra2b,Mrgpra2a (MGI:3033148,MGI:3033095,MGI:3033098,MGI:3821888)
chr11	18172836	18174279	11p15.1	11p15.1	607230	MRGPRX4, MRGX4	Mas-related G protein-coupled receptor family, member X4	MRGPRX4	117196	ENSG00000179817			Mrgprx1 (MGI:3033139)
chr11	18231354	18236836	11p15.1	11p15.1	104752	SAA4	Serum amyloid A4, constitutive	SAA4	6291	ENSG00000148965			
chr11	18238232	18248673	11p15.1	11p15.1	104751	SAA2	Serum amyloid A2	SAA2	6289	ENSG00000134339	pseudogene = SAA3		
chr11	18266224	18269976	11p15.1	11p15.1	104750	SAA1	Serum amyloid A1	SAA1	6288	ENSG00000173432			Saa2,Saa1 (MGI:98221,MGI:98222)
chr11	18278669	18322497	11p15-p13	11p15.1	607521	HPS5, RU2, KIAA1017	HPS gene 5 (ruby-eye 2, mouse, homolog of)	HPS5	11234	ENSG00000110756		Hermansky-Pudlak syndrome 5, 614074 (3), Autosomal recessive	Hps5 (MGI:2180307)
chr11	18322268	18367042	11p15.1-p14	11p15.1	189972	GTF2H1	General transcription factor IIH, polypeptide 1 (62kD subunit)	GTF2H1	2965	ENSG00000110768	within 50kb of LDHA		Gtf2h1 (MGI:1277216)
chr11	18394388	18408217	11p15.4	11p15.1	150000	LDHA, LDH1, GSD11	Lactate dehydrogenase A	LDHA	3939	ENSG00000134333		Glycogen storage disease XI, 612933 (3), Autosomal recessive	Ldha (MGI:96759)
chr11	18412297	18451245	11p15.5-p15.3	11p15.1	150150	LDHC, LDH3	Lactate dehydrogenase C	LDHC	3948	ENSG00000166796	closely linked to LDHB in other species; in man syntenic with LDHA; ?close to LDHA		Ldhc (MGI:96764)
chr11	18480310	18526955	11p15.2-p15.1	11p15.1	601387	TSG101	Tumor susceptibility gene 101	TSG101	7251	ENSG00000074319		Breast cancer, somatic, 114480 (3)	Tsg101 (MGI:106581)
chr11	18529605	18588837	11p15.2-p15.1	11p15.1	610985	UEVLD, UEV3, ATTP	Ubiquitin E2 variant and lactate/malate dehydrogenase domains-containing protein	UEVLD	55293	ENSG00000151116			Uevld (MGI:1860490)
chr11	18727927	18792720	11p15.2-p15.1	11p15.1	176879	PTPN5, STEP	Protein tyrosine phosphatase, nonreceptor-type, 5 (striatum-enriched)	PTPN5	84867	ENSG00000110786			Ptpn5 (MGI:97807)
chr11	18933812	18935001	11p15.1	11p15.1	607227	MRGPRX1, MRGX1	Mas-related G protein-coupled receptor family, member X1	MRGPRX1	259249	ENSG00000170255			Mrgprb2 (MGI:2441674)
chr11	19054454	19060680	11p15.1	11p15.1	607228	MRGPRX2, MRGX2	Mas-related G protein-coupled receptor family, member X2	MRGPRX2	117194	ENSG00000183695			Mrgprx2,Mrgprb1 (MGI:3033115,MGI:3588270)
chr11	19117098	19176419	11p15.1	11p15.1	612815	ZDHHC13, HIP14L	Zinc finger DHHC domain-containing protein 13	ZDHHC13	54503	ENSG00000177054			Zdhhc13 (MGI:1919227)
chr11	19182029	19210570	11p15.1	11p15.1	600824	CSRP3, CRP3, CLP, CMD1M, CMH12	Cysteine- and glycine-rich protein 3	CSRP3	8048	ENSG00000129170	mutation identified in 1 CMD1M family	?Cardiomyopathy, dilated, 1M, 607482 (3); Cardiomyopathy, hypertrophic, 12, 612124 (3), Autosomal dominant	Csrp3 (MGI:1330824)
chr11	19224062	19241654	11p15.1	11p15.1	612047	E2F8	E2F transcription factor 8	E2F8	79733	ENSG00000129173			E2f8 (MGI:1922038)
chr11	19345199	20121600	11p15.1	11p15.1	607026	NAV2, RAINB1, KIAA1419	Neuron navigator 2	NAV2	89797	ENSG00000166833			Nav2 (MGI:2183691)
chr11	20363684	20383782	11p15.1	11p15.1	605628	HTATIP2, TIP30, CC3	HIV-1 TAT-interacting protein 2, 30kD	HTATIP2	10553	ENSG00000109854			Htatip2 (MGI:1859271)
chr11	20599399	20655063	11p15.2-p15.1	11p15.1	604159	SLC6A5, GLYT2, HKPX3	Solute carrier family 6 (neurotransmitter transporter, glycine), member 5	SLC6A5	9152			Hyperekplexia 3, 614618 (3), Autosomal recessive, Autosomal dominant	Slc6a5 (MGI:105090)
chr11	20669550	21575685	11p15.2-p15.1	11p15.1	602319	NELL1	Nel-like 1	NELL1	4745	ENSG00000165973			Nell1 (MGI:2443902)
chr11	22000000	43400000	11p14.3-p12		185440	ST2	Suppression of tumorigenicity-2	ST2	6761				
chr11	22000000	31000000	11p14		613636	TST1	Tuberculin skin test reactivity, absence of		100526790		at chr11:26.37M	[Tuberculin skin test reactivity, absence of], 613636 (2)	
chr11	22192484	22283366	11p14.3	11p14.3	608662	ANO5, TMEM16E, GDD1, LGMD2L	Anoctamin 5	ANO5	203859	ENSG00000171714		Gnathodiaphyseal dysplasia, 166260 (3), Autosomal dominant; Miyoshi muscular dystrophy 3, 613319 (3), Autosomal recessive; Muscular dystrophy, limb-girdle, type 2L, 611307 (3), Autosomal recessive	Ano5 (MGI:3576659)
chr11	22338120	22379502	11p14.3	11p14.3	607563	SLC17A6, VGLUT2, DNPI	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6	SLC17A6	57084	ENSG00000091664			Slc17a6 (MGI:2156052)
chr11	22622532	22625840	11p15	11p14.3	613897	FANCF	Fanconi anemia, complementation group F	FANCF	2188	ENSG00000183161		Fanconi anemia, complementation group F, 603467 (3)	Fancf (MGI:3689889)
chr11	22627757	22885929	11p15.2-p14.3	11p14.3	602835	GAS2	Growth arrest-specific 2	GAS2	2620	ENSG00000148935			Gas2 (MGI:95657)
chr11	24496487	25082639	11p14-p13	11p14.3	608178	LUZP2	Leucine zipper protein 2	LUZP2	338645	ENSG00000187398			Luzp2 (MGI:1889615)
chr11	26189122	26667906	11p14	11p14.3-p14.2	610110	ANO3, TMEM16C, C11orf25, DYT24	Anoctamin 3	ANO3	63982	ENSG00000134343		Dystonia 24, 615034 (3), Autosomal dominant	Ano3 (MGI:3613666)
chr11	26200000	63600000	11p14.2-q12.3		612642	DFNA59	Deafness, autosomal dominant 59	DFNA59	100271924		between D22S929 and D11S480	Deafness, autosomal dominant 59, 612642 (2), Autosomal dominant	
chr11	26667018	26723355	11p14.2	11p14.2	612455	SLC5A12, SMCT2	Solute carrier family 5 (sodium/glucose cotransporter), member 12	SLC5A12	159963	ENSG00000148942			Slc5a12 (MGI:2138890)
chr11	26994080	26997086	11p14.2	11p14.2	617085	FIBIN	Fin bud initiation factor, zebrafish, homolog of	FIBIN	387758	ENSG00000176971			Fibin (MGI:1914856)
chr11	27040704	27127806	11p14.2	11p14.2	603312	BBOX1, BBOX	Butyrobetaine-gamma, 2-oxoglutarate dioxygenase 1	BBOX1	8424	ENSG00000129151			Bbox1 (MGI:1891372)
chr11	27200000	31000000	11p14.1		612321	DCDC5, KIAA1493	Doublecortin domain-containing protein 5						
chr11	27200000	48800000	11p14.1-p11.2		613364	SPG41	Spastic paraplegia 41	SPG41	100359402		max lod 2.36; between D11S1324 and D11S1993	?Spastic paraplegia 41, autosomal dominant, 613364 (2), Autosomal dominant	
chr11	27338513	27363247	11p14.1	11p14.1	612324	CCDC34	Coiled-coil domain-containing protein 34	CCDC34	91057	ENSG00000109881			Ccdc34 (MGI:1915451)
chr11	27365960	27472774	11p14.1	11p14.1	606666	LGR4, GPR48, BNMD17	Leucine-rich repeat-containing G protein-coupled receptor 4	LGR4	55366	ENSG00000205213	previously mapped to 5q34-q35.1	{Bone mineral density, low, susceptibility to}, 615311 (3)	Lgr4 (MGI:1891468)
chr11	27494417	27506778	11p14.1	11p14.1	612332	LIN7C, VELI3, MALS3	Lin7, C. elegans, homolog of, C	LIN7C	55327	ENSG00000148943			Lin7c (MGI:1330839)
chr11	27506851	27698170	11p14	11p14.1	611468	BDNFAS, BDNFOS	BDNF antisense RNA	BDNF-AS	497258				
chr11	27654892	27722057	11p13	11p14.1	113505	BDNF, BULN2, ANON2	Brain-derived neurotrophic factor	BDNF	627	ENSG00000176697	homeology with NRF3 on 12p; at p14 boundary	{Anorexia nervosa, susceptibility to}, 610269 (3); {Bulimia nervosa, age of onset of weight loss in}, 607499 (3), Multifactorial; Central hypoventilation syndrome, congenital, 209880 (3), Autosomal dominant; {Memory impairment, susceptibility to} (3); {Obsessive-compulsive disorder, protection against}, 164230 (3), Autosomal dominant	Bdnf (MGI:88145)
chr11	27888170	27891091	11p14.1	11p14.1	140575	HSP90AA2, HSPCAL3	Heat-shock protein, 90kD, alpha, class A, member 2	HSP90AA2P	3324				
chr11	28020615	28108198	11p14	11p14.1	611271	KIF18A	Kinesin family member 18A	KIF18A	81930	ENSG00000121621			Kif18a (MGI:2446977)
chr11	28056814	28056909	11p14.1	11p14.1	612330	MIR610, MIRN610	Micro RNA 610	MIR610	693195				
chr11	30009740	30017029	11q13.4-q14.1	11p14.1	176266	KCNA4, KCNA8	Potassium voltage-gated channel, shaker-related subfamily, member 4	KCNA4	3739	ENSG00000182255	other map to 11p		Kcna4 (MGI:96661)
chr11	30231015	30235276	11p13	11p14.1	136530	FSHB, HH24	Follicle-stimulating hormone, beta polypeptide	FSHB	2488	ENSG00000131808	distal to AN2	Hypogonadotropic hypogonadism 24 without anosmia, 229070 (3), Autosomal recessive	Fshb (MGI:95582)
chr11	30323098	30338457	11p14.1-p13	11p14.1	612295	C11orf46	Chromosome 11 open reading frame 46	ARL14EP	120534	ENSG00000152219			Arl14ep (MGI:1926020)
chr11	30384492	30586994	11p14-p13	11p14.1	600911	MPPED2, C11orf8, D11S302E, 239FB	Metallophosphoesterase domain-containing protein 2	MPPED2	744	ENSG00000066382			Mpped2 (MGI:1924265)
chr11	30863602	31369809	11p13	11p14-p13	608062	DCDC1	Doublecortin domain-containing protein 1	DCDC1	341019	ENSG00000170959			
chr11	31000000	63600000	11p13-q12		607644	CANDF3, CANDN1, FCNC	Candidiasis, familial, 3	CANDN1	338434		between D11S1312 and D11S4191	Candidiasis, familial, 3, 607644 (2), Autosomal dominant	
chr11	31000000	36400000	11p13		616902	DEL11p13, C11DELp13	Chromosome 11p13 deletion syndrome, distal					Chromosome 11p13 deletion syndrome, distal, 616902 (4), Autosomal dominant	
chr11	31000000	36400000	11p13		194072	DEL11p13, C11DELp13, WAGR	Wilms tumor, aniridia, genitourinary anomalies and mental retardation syndrome (chromosome 11p13 deletion syndrome)				deletion of WT1 and PAX6 genes	Wilms tumor, aniridia, genitourinary anomalies and mental retardation syndrome, 194072 (4), Autosomal dominant, Somatic mutation	
chr11	31000000	43400000	11p13-p12		609941	DFNB51	Deafness, autosomal recessive 51	DFNB51	448963		max lod at D11S4102	Deafness, autosomal recessive 51, 609941 (2), Autosomal recessive	
chr11	31000000	36400000	11p13		117100	ECT, BECTS	Centrotemporal epilepsy		100379198		previously assigned to 15q14	Centrotemporal epilepsy, 117100 (2), Isolated cases	
chr11	31000000	43400000	11p13-p12		605750	EVR3	Exudative vitreoretinopathy 3	EVR3	81864			Exudative vitreoretinopathy 3, 605750 (2), Autosomal dominant	
chr11	31000000	85900000	11p13-q14.1		614344	MRT23	Mental retardation, autosomal recessive 23	MRT23	100852398		between rs604518 and rs10899421	Mental retardation, autosomal recessive 23, 614344 (2), Autosomal recessive	
chr11	31000000	36400000	11p13		609256	MYP7	Myopia 7	MYP7	553190			Myopia 7, 609256 (2), Multifactorial	
chr11	31000000	43400000	11p13-p12		612469	WAGRO, DEL11p14p12	Wilms tumor, aniridia, genitourinary anomalies, mental retardation, and obesity syndrome				contiguous gene deletion syndrome	WAGRO syndrome, 612469 (4)	
chr11	31369829	31432834	11p13	11p13	611072	DPH4	DPH4, S. cerevisiae, homolog of	DNAJC24	120526	ENSG00000170946			Dnajc24 (MGI:1919522)
chr11	31432398	31509643	11p13	11p13	612323	IMMP1L, IMP1	Inner mitochondrial membrane peptidase, subunit 1, S. cerevisiae, homolog of	IMMP1L	196294	ENSG00000148950			Immp1l (MGI:1913791)
chr11	31509728	31784524	11p13	11p13	606985	ELP4, PAX6NEB, AN2	Elongation protein 4, S. cerevisiae, homolog of	ELP4	26610	ENSG00000109911	mutation identified in 1 AN2 patient	?Aniridia 2, 617141 (3), Autosomal dominant	Elp4 (MGI:1925016)
chr11	31784791	31817960	11p13	11p13	607108	PAX6, AN2, MGDA, FVH1, ASGD5	Paired box homeotic gene-6	PAX6	5080	ENSG00000007372	mutation identified in 1 patient each with MDGA, COLBN, or COLB	Aniridia, 106210 (3), Autosomal dominant; Anterior segment dysgenesis 5, multiple subtypes, 604229 (3); Cataract with late-onset corneal dystrophy, 106210 (3), Autosomal dominant; ?Coloboma of optic nerve, 120430 (3), Autosomal dominant; ?Coloboma, ocular, 120200 (3), Autosomal dominant; Foveal hypoplasia 1, 136520 (3), Autosomal dominant; Keratitis, 148190 (3), Autosomal dominant; ?Morning glory disc anomaly, 120430 (3), Autosomal dominant; Optic nerve hypoplasia, 165550 (3), Autosomal dominant	Pax6 (MGI:97490)
chr11	32090930	32105725	11p13	11p13	602735	RCN1	Reticulocalbin 1	RCN1	5954	ENSG00000049449			Rcn1 (MGI:104559)
chr11	32387774	32435538	11p13	11p13	607102	WT1, NPHS4	Wilms tumor-1	WT1	7490	ENSG00000184937	clumped: pter-FSHB-AN2-WT1-CAT	Denys-Drash syndrome, 194080 (3), Autosomal dominant, Somatic mutation; Frasier syndrome, 136680 (3), Autosomal dominant, Somatic mutation; Meacham syndrome, 608978 (3); Mesothelioma, somatic, 156240 (3); Nephrotic syndrome, type 4, 256370 (3), Autosomal dominant; Wilms tumor, type 1, 194070 (3), Autosomal dominant, Somatic mutation	Wt1 (MGI:98968)
chr11	32435517	32458768	11p13	11p13	607899	WT1AS, WIT1	WT1 antisense RNA	WT1-AS	51352				
chr11	32583766	32602872	11p13	11p13	609641	EIF3M, PCID1, B5, GA17	Eukaryotic translation initiation factor 3, subunit M	EIF3M	10480	ENSG00000149100			Eif3m (MGI:1351744)
chr11	32602079	32794657	11p13	11p13	612328	CCDC73	Coiled-coil domain-containing protein 73	CCDC73	493860	ENSG00000186714			Ccdc73 (MGI:3606488)
chr11	32829755	32858122	11p13	11p13	611690	PRRG4, PRGP4, TMG4	Proline-rich gamma-carboxyglutamic acid protein 4	PRRG4	79056	ENSG00000135378			Prrg4 (MGI:2442211)
chr11	33015863	33033581	11p13	11p13	612294	DEPDC7, TR2	DEP domain-containing protein 7	DEPDC7	91614	ENSG00000121690			Depdc7 (MGI:2139258)
chr11	33076149	33079453	11p14.1-p13	11p13	612296	LOC283267	LOC283267 gene	LINC00294	283267				
chr11	33084583	33161490	11p13	11p13	600367	CSTF3	Cleavage stimulation factor, 3' pre-RNA, subunit 3, 77kD	CSTF3	1479	ENSG00000176102			Cstf3 (MGI:1351825)
chr11	33256671	33357022	11p13	11p13	604424	HIPK3, PKY, DYRK6	Homeodomain-interacting protein kinase-3	HIPK3	10114	ENSG00000110422			Hipk3 (MGI:1314882)
chr11	33376568	33674101	11p13	11p13	612297	C11orf41, G2	Chromosome 11 open reading frame 41	KIAA1549L	25758	ENSG00000110427			D430041D05Rik (MGI:2181743)
chr11	33703009	33736478	11p13	11p13	107271	CD59, MIC11	CD59 antigen (p18-20)	CD59	966	ENSG00000085063	in mouse Ly-6 = multigene complex	Hemolytic anemia, CD59-mediated, with or without immune-mediated polyneuropathy, 612300 (3), Autosomal recessive	Cd59b (MGI:1888996)
chr11	33740943	33774524	11p13	11p13	609089	FBXO3, FBX3, FBA	F-box only protein 3	FBXO3	26273	ENSG00000110429			Fbxo3 (MGI:1929084)
chr11	33858575	33892288	11p13	11p13	180385	LMO2, RBTNL1, RHOM2, TTG2	LIM domain only 2 (rhombotin-like 1)	LMO2	4005	ENSG00000135363	3rd rhombotin gene not on 11	Leukemia, acute T-cell, 180385 (2)	Lmo2 (MGI:102811)
chr11	34051662	34102609	11p13	11p13	601178	CAPRIN1, M11S1, GPIAP1, GRIP137	Cell cycle associated protein 1	CAPRIN1	4076	ENSG00000135387			Caprin1 (MGI:1858234)
chr11	34105563	34146910	11p13	11p13	609221	NAT10, ALP, KIAA1709	N-acetyltransferase 10	NAT10	55226	ENSG00000135372			Nat10 (MGI:2138939)
chr11	34438924	34472059	11p13	11p13	115500	CAT	Catalase	CAT	847	ENSG00000121691	cen-CAT-WT1-AN2-pter	Acatalasemia, 614097 (3)	Cat (MGI:88271)
chr11	34478790	34513799	11p15-p13	11p13	605169	ELF5, ESE2	E74-like factor 5 (epithelium-specific ETS factor 2)	ELF5	2001	ENSG00000135374			
chr11	34621040	34663287	11p12	11p13	605439	EHF, ESE3	ETS homologous factor	EHF	26298	ENSG00000135373			Ehf (MGI:1270840)
chr11	34882294	34916410	11p13	11p13	612491	APIP, CGI29, MMRP19	APAF1-interacting protein	APIP	51074	ENSG00000149089			Apip (MGI:1926788)
chr11	34915828	34996127	11p13	11p13	608769	PDHX, PDX1, E3BP, PDHXD	Pyruvate dehydrogenase complex, lipoyl-containing component X	PDHX	8050	ENSG00000110435		Lacticacidemia due to PDX1 deficiency, 245349 (3), Autosomal recessive	Pdhx (MGI:1351627)
chr11	35138869	35232401	11pter-p13	11p13	107269	CD44, MDU2, MDU3, MIC4, IN	CD44 antigen (homing function)	CD44	960	ENSG00000026508		[Blood group, Indian system], 609027 (3)	Cd44 (MGI:88338)
chr11	35251204	35420062	11p13-p12	11p13	600300	SLC1A2, EAAT2, EIEE41	Solute carrier family 1 (glial high affinity glutamate transporter), member 2	SLC1A2	6506	ENSG00000110436		Epileptic encephalopathy, early infantile, 41, 617105 (3), Autosomal dominant	Slc1a2 (MGI:101931)
chr11	35618186	35620872	11p13	11p13	612206	FJX1	Four-jointed box, Drosophila, homolog of, 1	FJX1	24147	ENSG00000179431			Fjx1 (MGI:1341907)
chr11	35662691	35811052	11p13	11p13	612298	TRIM44, AN3	Tripartite motif-containing protein 44	TRIM44	54765	ENSG00000166326	mutation identified in 1 AN3 family	?Aniridia 3, 617142 (3), Autosomal dominant	Trim44 (MGI:1931835)
chr11	36272291	36289448	11p13	11p13	612299	COMM9	COMM domain-containing protein 9	COMMD9	29099	ENSG00000110442			Commd9 (MGI:1923751)
chr11	36296174	36465203	11p13-p12	11p13-p12	611728	PRR5L, PROTOR2, FLJ14213	Proline-rich protein 5-like	PRR5L	79899	ENSG00000135362			Prr5l (MGI:1919696)
chr11	36400000	43400000	11p12		611739	BMND8	Bone mineral density QTL 8		100188854		between D11S1392 and D11S4102	{Osteoporosis}, 166710 (2), Autosomal dominant	
chr11	36400000	53400000	11p12-p11		610898	PSNP3	Supranuclear palsy, progressive, 3		100038248			Supranuclear palsy, progressive, 3, 610898 (2)	
chr11	36483766	36510312	11p12	11p12	602355	TRAF6	TNF receptor-associated factor 6	TRAF6	7189	ENSG00000175104			Traf6 (MGI:108072)
chr11	36510365	36579761	11p13	11p12	179615	RAG1	Recombination activating gene-1	RAG1	5896	ENSG00000166349	assignment to 14 in error	Alpha/beta T-cell lymphopenia with gamma/delta T-cell expansion, severe cytomegalovirus infection, and autoimmunity, 609889 (3); Combined cellular and humoral immune defects with granulomas, 233650 (3), Autosomal recessive; Omenn syndrome, 603554 (3), Autosomal recessive; Severe combined immunodeficiency, B cell-negative, 601457 (3), Autosomal recessive	Rag1 (MGI:97848)
chr11	36591942	36598278	11p13	11p12	179616	RAG2	Recombination activating gene-2	RAG2	5897	ENSG00000175097	assignment to 14 in error	Combined cellular and humoral immune defects with granulomas, 233650 (3), Autosomal recessive; Omenn syndrome, 603554 (3), Autosomal recessive; Severe combined immunodeficiency, B cell-negative, 601457 (3), Autosomal recessive	Rag2 (MGI:97849)
chr11	40107065	41460418	11p12	11p12	608817	LRRC4C, NGL1, KIAA1580	Leucine rich repeat containing 4C (netrin-G1 ligand)	LRRC4C	57689	ENSG00000148948			Lrrc4c (MGI:2442636)
chr11	43311954	43344529	11p12	11p12	609774	API5, AAC11	Apoptosis inhibitor 5	API5	8539	ENSG00000166181			Api5 (MGI:1888993)
chr11	43400000	53400000	11p11		609630	CLLS1	Leukemia, chronic lymphocytic, susceptibility to, 1		100188791			{Leukemia, chronic lymphocytic, susceptibility to, 1}, 609630 (2)	
chr11	43400000	48800000	11p11.2		616229	OI16, C16DELp11.2, DEL16p11.2	Osteogenesis imperfecta, type XVI (chromosome 11p11.2 deletion syndrome, 91.3kb)					Osteogenesis imperfecta, type XVI, 616229 (4), Autosomal recessive	
chr11	43400000	48800000	11p11.2		601224	PSS	Potocki-Shaffer syndrome				contiguous gene syndrome caused by deletion of 11p11.2	Potocki-Shaffer syndrome, 601224 (4)	
chr11	43400000	48800000	11p11.2		191270	TYRL	Tyrosinase-like	TYRL	7300				
chr11	43880806	43920274	11p11.12	11p11.2	610603	ALKBH3, PCA1, DEPC1, ABH3	AlkB, E. coli, homolog of, 3	ALKBH3	221120	ENSG00000166199			Alkbh3 (MGI:1916363)
chr11	44066117	44084236	11p11	11p11.2	608405	ACCS, ACS, PHACS	1-aminocyclopropane-1-carboxylate synthase	ACCS	84680	ENSG00000110455			Accs (MGI:1919717)
chr11	44095548	44245429	11p12-p11	11p11.2	608210	EXT2, SSMS	Exostosin 2	EXT2	2132	ENSG00000151348	mutation identified in 1 SSMS family	Exostoses, multiple, type 2, 133701 (3), Autosomal dominant; ?Seizures, scoliosis, and macrocephaly syndrome, 616682 (3), Autosomal recessive	Ext2 (MGI:108050)
chr11	44260727	44310165	11p11.2	11p11.2	605420	ALX4, PFM2, FPP, FND2, CRS5	Aristaless-like 4, mouse, homolog of	ALX4	60529	ENSG00000052850		{Craniosynostosis 5, susceptibility to}, 615529 (3), Autosomal dominant; Frontonasal dysplasia 2, 613451 (3), Autosomal recessive; Parietal foramina 2, 609597 (3), Autosomal dominant	Alx4 (MGI:108359)
chr11	44565590	44620362	11p11.2	11p11.2	600623	CD82, SAR2, KAI1, ST6	CD82 antigen	CD82	3732	ENSG00000085117		{Prostate cancer, susceptibility to}, 176807 (2), Autosomal dominant	Cd82 (MGI:104651)
chr11	44932347	44951305	11p11.2	11p11.2	617867	TP53I11, PIG11	Tumor protein p53-inducible protein 11	TP53I11	9537	ENSG00000175274			Trp53i11 (MGI:2670995)
chr11	45094012	45235123	11p11.2	11p11.2	616347	PRDM11, PFM8	PR domain-containing protein 11	PRDM11	56981	ENSG00000019485			Prdm11 (MGI:2685553)
chr11	45240301	45286332	Chr.11	11p11.2	607716	SYT13, KIAA1427	Synaptotagmin 13	SYT13	57586	ENSG00000019505			Syt13 (MGI:1933945)
chr11	45647688	45665655	11p11.2-p11.1	11p11.2	603797	CHST1, KSGAL6ST	Carbohydrate sulfotransferase-1	CHST1	8534	ENSG00000175264			Chst1 (MGI:1924219)
chr11	45804071	45813015	11p11.2	11p11.2	605881	SLC35C1, FUCT1, CDG2C	Solute carrier family 35, member C1 (GDP-Fucose transporter 1)	SLC35C1	55343	ENSG00000181830		Congenital disorder of glycosylation, type IIc, 266265 (3), Autosomal recessive	Slc35c1 (MGI:2443301)
chr11	45847117	45883247	Chr.11	11p11.2	603732	CRY2	Cryptochrome 2	CRY2	1408	ENSG00000121671			Cry2 (MGI:1270859)
chr11	45885495	45906464	11p12-p11.2	11p11.2	604641	MAPK8IP1, IB1	Mitogen-activated protein kinase 8-interacting protein 1	MAPK8IP1	9479	ENSG00000121653		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant	Mapk8ip1 (MGI:1309464)
chr11	45909668	45918122	11p12-p11.2	11p11.2	603360	PEX16, PBD8A, PBD8B	Peroxisome biogenesis factor 16	PEX16	9409			Peroxisome biogenesis disorder 8A (Zellweger), 614876 (3), Autosomal recessive; Peroxisome biogenesis disorder 8B, 614877 (3), Autosomal recessive	Pex16 (MGI:1338829)
chr11	45921620	45929095	11p11.2	11p11.2	609709	GYLTL1B, LARGE2	Glycosyltransferase-like 1B	LARGE2	120071	ENSG00000165905			Large2 (MGI:2443769)
chr11	45929318	46121433	11p11.2	11p11.2	608325	PHF21A, BHC80, KIAA1696	PHD finger protein 21A	PHF21A	51317	ENSG00000135365			Phf21a (MGI:2384756)
chr11	46277637	46321421	11p11.2	11p11.2	616215	CREB3L1, OASIS	cAMP response element-binding protein 3-like 1	CREB3L1	90993	ENSG00000157613			Creb3l1 (MGI:1347062)
chr11	46332904	46380553	11p11.2	11p11.2	601441	DGKZ	Diacylglycerol kinase, zeta, 104kD	DGKZ	8525	ENSG00000149091			Dgkz (MGI:1278339)
chr11	46380783	46383836	11p11.2	11p11.2	162096	MDK, NEGF2	Midkine (neurite growth-promoting factor 2)	MDK	4192	ENSG00000110492			Mdk (MGI:96949)
chr11	46384791	46386607	11p12-p11.2	11p11.2	118495	CHRM4	Cholinergic receptor, muscarinic, 4	CHRM4	1132	ENSG00000180720			Chrm4 (MGI:88399)
chr11	46396411	46594068	11p11.2	11p11.2	611359	AMBRA1, KIAA1736	Activating molecule in beclin 1-regulated autophagy	AMBRA1	55626	ENSG00000110497			Ambra1 (MGI:2443564)
chr11	46603026	46617893	11p11.2	11p11.2	615086	HARBI1	Harbinger transposase-derived gene 1	HARBI1	283254	ENSG00000180423			Harbi1 (MGI:2443194)
chr11	46617275	46676018	11p11.2	11p11.2	615088	ATG13, KIAA0652, PARATARG8	Autophagy 13, S. cerevisiae, homolog of	ATG13	9776	ENSG00000175224			Atg13 (MGI:1196429)
chr11	46677074	46700664	11p12-q12	11p11.2	602732	ARHGAP1, RHOGAP1, CDC42GAP	RHO GTPase-activating protein 1	ARHGAP1	392	ENSG00000175220			Arhgap1 (MGI:2445003)
chr11	46700766	46705915	11p11.2	11p11.2	616454	ZNF408, EVR6, RP72	Zinc finger protein 408	ZNF408	79797	ENSG00000175213	mutation identified in 1 EVR6 family	?Exudative vitreoretinopathy 6, 616468 (3), Autosomal dominant; Retinitis pigmentosa 72, 616469 (3), Autosomal recessive	Zfp408 (MGI:2685857)
chr11	46719165	46739507	11p11-q12	11p11.2	176930	F2, THPH1, RPRGL2	Coagulation factor II (thrombin)	F2	2147	ENSG00000180210		Dysprothrombinemia, 613679 (3), Autosomal recessive; Hypoprothrombinemia, 613679 (3), Autosomal recessive; {Pregnancy loss, recurrent, susceptibility to, 2}, 614390 (3), Autosomal dominant; {Stroke, ischemic, susceptibility to}, 601367 (3), Multifactorial; Thrombophilia due to thrombin defect, 188050 (3), Autosomal dominant	F2 (MGI:88380)
chr11	46743533	46846307	11p11.2	11p11.2	611142	CKAP5, CHTOG, MSPS, KIAA0097	Cytoskeleton-associated protein 5	CKAP5	9793	ENSG00000175216			Ckap5 (MGI:1923036)
chr11	46854714	46918621	11p12-p11.2	11p11.2	604270	LRP4, MEGF7, CLSS, SOST2, CMS17	Low density lipoprotein receptor-related protein 4	LRP4	4038	ENSG00000134569	mutation identified in 1 CMS17 family	Cenani-Lenz syndactyly syndrome, 212780 (3), Autosomal recessive; ?Myasthenic syndrome, congenital, 17, 616304 (3), Autosomal recessive; Sclerosteosis 2, 614305 (3), Autosomal recessive, Autosomal dominant	Lrp4 (MGI:2442252)
chr11	47164297	47177124	11p11.2-p11.12	11p11.2	606908	ARFGAP2, ZNF289	ADP-ribosylation factor GTPase-activating protein 2	ARFGAP2	84364	ENSG00000149182			Arfgap2 (MGI:1924288)
chr11	47177520	47186458	11p11	11p11.2	606513	PACSIN3	Protein kinase C and casein kinase substrate in neurons 3	PACSIN3	29763	ENSG00000165912			Pacsin3 (MGI:1891410)
chr11	47214941	47239217	11p12-p11	11p11.2	600811	DDB2	Damage-specific DNA binding protein 2, 48kD	DDB2	1643	ENSG00000134574		Xeroderma pigmentosum, group E, DDB-negative subtype, 278740 (3), Autosomal recessive	Ddb2 (MGI:1355314)
chr11	47239301	47248846	11p11.2	11p11.2	171650	ACP2	Acid phosphatase 2, lysosomal	ACP2	53	ENSG00000134575		?Lysosomal acid phosphatase deficiency, 200950 (1), Autosomal recessive	Acp2 (MGI:87882)
chr11	47248299	47269032	11p11.2	11p11.2	602423	NR1H3, LXRA	Nuclear receptor subfamily 1, group H, member 3	NR1H3	10062	ENSG00000025434			Nr1h3 (MGI:1352462)
chr11	47269375	47330030	11p11.2	11p11.2	603584	MADD, DENN	MAP kinase-activating death domain (differentially expressed in normal and neoplastic cells)	MADD	8567	ENSG00000110514			Madd (MGI:2444672)
chr11	47331405	47352701	11p11.2	11p11.2	600958	MYBPC3, CMH4, CMD1MM, LVNC10	Myosin-binding protein C, cardiac	MYBPC3	4607	ENSG00000134571		Cardiomyopathy, dilated, 1MM, 615396 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 4, 115197 (3), Autosomal dominant; Left ventricular noncompaction 10, 615396 (3), Autosomal dominant	Mybpc3 (MGI:102844)
chr11	47354857	47395639	11p11.2	11p11.2	165170	SPI1, SFPI1	Oncogene SPI1	SPI1	6688	ENSG00000066336			Spi1 (MGI:98282)
chr11	47407131	47416500	11p11.2	11p11.2	608735	SLC39A13, ZIP13, EDSSPD3	Solute carrier family 39 (zinc transporter), member 13	SLC39A13	91252	ENSG00000165915		Ehlers-Danlos syndrome, spondylodysplastic type, 3, 612350 (3), Autosomal recessive	Slc39a13 (MGI:1915677)
chr11	47418768	47426472	11p13-p12	11p11.2	186852	PSMC3, TBP1	Proteasome (prosome, macropain) 26S subunit, ATPase, 3	PSMC3	5702	ENSG00000165916			Psmc3 (MGI:1098754)
chr11	47437756	47449177	11p11.2-p11.1	11p11.2	601592	RAPSN, CMS1D, CMS11, FADS	Receptor-associated protein of the synapse, 43kD	RAPSN	5913	ENSG00000165917		Fetal akinesia deformation sequence, 208150 (3), Autosomal recessive; Myasthenic syndrome, congenital, 11, associated with acetylcholine receptor deficiency, 616326 (3), Autosomal recessive	Rapsn (MGI:99422)
chr11	47465932	47565568	11p11	11p11.2	601074	CELF1, CUGBP1, NAB50, BRUNOL2, CUGBP	CUGbp and ELAV-like family, member 1	CELF1	10658	ENSG00000149187			
chr11	47572196	47579014	11p11.2	11p11.2	617645	KBTBD4, HSPC252, BKLHD4	KELCH repeat- and BTB/POZ domain-containing protein 4	KBTBD4	55709	ENSG00000123444			Kbtbd4 (MGI:1914386)
chr11	47579009	47584562	11p11.11	11p11.2	603846	NDUFS3	NADH dehydrogenase (ubiquinone) Fe-S protein 3, 30kD	NDUFS3	4722	ENSG00000213619		Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufs3 (MGI:1915599)
chr11	47589663	47596335	11p11.2	11p11.2	614911	C1QTNF4, CTRP4	C1q- and tumor necrosis factor-related protein 4	C1QTNF4	114900	ENSG00000172247			C1qtnf4 (MGI:1914695)
chr11	47604308	47642653	11q12.1	11p11.2	613221	MTCH2	Mitochondrial carrier homolog 2	MTCH2	23788	ENSG00000109919			Mtch2 (MGI:1929260)
chr11	47659167	47715381	11p11.2	11p11.2	617345	AGBL2, CCP2	ATP/GTP-binding protein-like 2	AGBL2	79841	ENSG00000165923			Agbl2 (MGI:2443254)
chr11	47716493	47767477	11p11.2	11p11.2	615265	FNBP4, FBP30, KIAA1014	Formin-binding protein 4	FNBP4	23360	ENSG00000109920			Fnbp4 (MGI:1860513)
chr11	47778082	47848543	11p11.2	11p11.2	607614	NUP160, KIAA0197	Nucleoporin, 160kD	NUP160	23279	ENSG00000030066			Nup160 (MGI:1926227)
chr11	47980503	48170841	11p11.2	11p11.2	600925	PTPRJ, DEP1	Protein tyrosine phosphatase, receptor type, J polypeptide	PTPRJ	5795	ENSG00000149177		Colon cancer, somatic, 114500 (3)	Ptprj (MGI:104574)
chr11	49145093	49208669	11p11.2	11p11.12	600934	FOLH1, FOLH, PSM, PSMA	Folate hydrolase 1 (prostate-specific membrane antigen)	FOLH1	2346	ENSG00000086205	?pseudogene on 11q14		
chr11	54603068	54603997	11p11.12	11q11	614273	OR4C46	Olfactory receptor, family 4, subfamily C, member 46	OR4C46	119749	ENSG00000185926			Olfr1258 (MGI:3031092)
chr11	55800000	77400000	11q12.1-q13.5		135610	FNL2	Fibronectin-like-2						
chr11	55800000	66100000	11q12-q13.1		612795	PURAQTL1	Polyunsaturated fatty acids plasma level QTL1		100302559		associated with rs174537	[Polyunsaturated fatty acids plasma level QTL1], 612795 (2)	
chr11	55800000	63600000	11q12		608687	SCA20, DUP11q12, C11DUPq12	Spinocerebellar ataxia 20 (chromosome 11q12 duplication syndrome, 260kb)				contiguous gene duplication syndrome	Spinocerebellar ataxia 20, 608687 (4), Autosomal dominant	
chr11	55935455	55936399	11q12.1	11q12.1	608496	OR5I1, OLF1	Olfactory receptor, family 5, subfamily I, member 1	OR5I1	10798	ENSG00000167825			Olfr152 (MGI:1313139)
chr11	55993680	55994624	11q12.1	11q12.1	608492	OR5F1	Olfactory receptor, family 5, subfamily F, member 1	OR5F1	338674	ENSG00000149133			
chr11	57181746	57191713	11q12.1	11q12.1	615213	LRRC55	Leucine-rich repeat-containing protein 55	LRRC55	219527	ENSG00000183908			Lrrc55 (MGI:2685197)
chr11	57233576	57237452	11q12	11q12.1	600052	APLNR, AGTRL1, APJ	Apelin receptor	APLNR	187	ENSG00000134817			Aplnr (MGI:1346086)
chr11	57299628	57324951	11q12	11q12.1	607104	TNKS1BP1, TAB182, KIAA1741	Tankyrase 1-binding protein 1, 182kD	TNKS1BP1	85456	ENSG00000149115			Tnks1bp1 (MGI:2446193)
chr11	57325984	57335876	11q12	11q12.1	604328	SSRP1, FACT	Structure-specific recognition protein 1	SSRP1	6749	ENSG00000149136			Ssrp1 (MGI:107912)
chr11	57335942	57372398	11q12	11q12.1	600843	P2RX3, P2X3	Purinergic receptor P2X, ligand-gated ion channel, 3	P2RX3	5024	ENSG00000109991			P2rx3 (MGI:1097160)
chr11	57376768	57381149	11cen-q12	11q12.1	606814	PRG3, MBPH	Proteoglycan 3	PRG3	10394	ENSG00000156575			Prg3 (MGI:1858200)
chr11	57386786	57390656	11cen-q12	11q12.1	605601	PRG2, MBP	Proteoglycan 2	PRG2	5553	ENSG00000186652			Prg2 (MGI:103294)
chr11	57460536	57477538	11q12.1	11q12.1	610462	RTN4RL2, NGRH1, NGR2	Reticulon 4 receptor-like 2	RTN4RL2	349667	ENSG00000186907			Rtn4rl2 (MGI:2669796)
chr11	57484530	57516560	11p11.2-p11.1	11q12.1	603733	SLC43A1, LAT3, POV1	Solute carrier family 43 (L-type amino acid transporter), member 1	SLC43A1	8501	ENSG00000149150			Slc43a1 (MGI:1931352)
chr11	57528462	57542504	11q12.1-q12.3	11q12.1	602251	TIMM10, TIM10A, TIM10	Translocase of inner mitochondrial membrane 10, yeast, homolog of	TIMM10	26519	ENSG00000134809			Timm10 (MGI:1353429)
chr11	57536840	57550273	11q12.1	11q12.1	613664	SMTNL1, CHASM	Smoothelin-like 1	SMTNL1	219537	ENSG00000214872			Smtnl1 (MGI:1915928)
chr11	57551654	57568329	11q12	11q12.1	603890	UBE2L6, UBCH8	Ubiquitin-conjugating enzyme E2L 6	UBE2L6	9246	ENSG00000156587			Ube2l6 (MGI:1914500)
chr11	57597553	57614852	11q11-q13.1	11q12.1	606860	C1NH, HAE1, HAE2, SERPING1	Complement component-1 inhibitor	SERPING1	710	ENSG00000149131		Angioedema, hereditary, types I and II, 106100 (3), Autosomal recessive, Autosomal dominant; Complement component 4, partial deficiency of, 120790 (3), Autosomal dominant	Serping1 (MGI:894696)
chr11	57641197	57641285	11q12	11q12.1	610175	MIR130A, MIRN130A	Micro RNA 130A	MIR130A	406919				
chr11	57645086	57649943	11q12.1	11q12.1	609725	YPEL4	Yippee-like 4	YPEL4	219539	ENSG00000166793			Ypel4 (MGI:3605071)
chr11	57657743	57661864	11q12.1	11q12.1	608757	CLP1, HEAB, PCH10	Cleavage and polyadenylation factor I subunit 1, yeast, homolog of	CLP1	10978	ENSG00000172409		Pontocerebellar hypoplasia, type 10, 615803 (3), Autosomal recessive	Clp1 (MGI:2138968)
chr11	57668001	57701186	11q12.1	11q12.1	614586	ZDHHC5, DHHC5, ZNF375, KIAA1748	Zinc finger DHHC domain-containing protein 5	ZDHHC5	25921	ENSG00000156599			Zdhhc5 (MGI:1923573)
chr11	57703708	57712526	11q12.1	11q12.1	612385	MED19	Mediator complex subunit 19	MED19	219541	ENSG00000156603			Med19 (MGI:1914234)
chr11	57712522	57740972	11cen-q22.3	11q12.1	616715	TMX2	Thioredoxin-related transmembrane protein 2	TMX2	51075	ENSG00000213593			Tmx2 (MGI:1914208)
chr11	57741249	57743553	11q12.1	11q12.1	607914	SELENOH, SELH	Selenoprotein H	SELENOH	280636	ENSG00000211450			Selenoh (MGI:1919907)
chr11	57761761	57819179	11q11	11q12.1	601045	CTNND1, CTNND, BCDS2	Catenin (cadherin-associated protein), delta 1	CTNND1	1500	ENSG00000198561		Blepharocheilodontic syndrome 2, 617681 (3), Autosomal dominant	Ctnnd1 (MGI:105100)
chr11	58526870	58578238	11q12.1	11q12.1	605390	LPXN	Leupaxin	LPXN	9404	ENSG00000110031			Lpxn (MGI:2147677)
chr11	58622672	58625732	11q12.2	11q12.1	118945	CNTF	Ciliary neurotrophic factor	CNTF	1270	ENSG00000242689			Cntf (MGI:88439)
chr11	58708756	58731973	11q12.1	11q12.1	607424	GLYAT, ACGNAT, CAT	Glycine-N-acyltransferase	GLYAT	10249	ENSG00000149124			Glyat (MGI:2147502)
chr11	58834064	58905839	11q12.1	11q12.1	614762	GLYATL2	Glycine N-acyltransferase-like 2	GLYATL2	219970	ENSG00000156689			
chr11	58905397	58957073	11q12.1	11q12.1	614761	GLYATL1	Glycine-N-acyltransferase-like 1	GLYATL1	92292	ENSG00000166840			
chr11	59107184	59127414	11q12.1	11q12.1	615584	FAM111B, POIKTMP	Family with sequence similarity 111, member B	FAM111B	374393	ENSG00000189057		Poikiloderma, hereditary fibrosing, with tendon contractures, myopathy, and pulmonary fibrosis, 615704 (3), Autosomal dominant	
chr11	59142745	59155038	11q12.1	11q12.1	615292	FAM111A, KIAA1895, KCS2, GCLEB	Family with sequence similarity 111, member A	FAM111A	63901	ENSG00000166801		Gracile bone dysplasia, 602361 (3), Autosomal dominant; Kenny-Caffey syndrome, type 2, 127000 (3), Autosomal dominant	Fam111a (MGI:1915508)
chr11	59171429	59208586	11q12.1	11q12.1	616110	DTX4, RNF155, KIAA0937	Deltex, Drosoophila, homolog of, 4	DTX4	23220	ENSG00000110042			Dtx4 (MGI:2672905)
chr11	59208509	59213020	11q12.1	11q12.1	610390	MPEG1, MPG1	Macrophage expressed gene 1	MPEG1	219972	ENSG00000197629			Mpeg1 (MGI:1333743)
chr11	59364458	59365393	11q12.1	11q12.1	615702	OR5AN1	Olfactory receptor, family 5, subfamily AN, member 1	OR5AN1	390195	ENSG00000176495			Olfr1434 (MGI:3031268)
chr11	59574397	59616143	11q12.1	11q12.1	167040	OSBP	Oxysterol-binding protein	OSBP	5007	ENSG00000110048			Osbp (MGI:97447)
chr11	59636715	59669037	11q12.1	11q12.1	614660	PATL1, PAT1B	Protein associated with topoisomerase II, S. cerevisiae, homolog of, 1	PATL1	219988	ENSG00000166889			Patl1 (MGI:2147679)
chr11	59755058	59805881	11q12.1	11q12.1	600876	STX3, STX3A	Syntaxin 3	STX3	6809	ENSG00000166900			Stx3 (MGI:103077)
chr11	59806134	59810871	11q12-q13.1	11q12.1	611829	MRPL16	Mitochondrial ribosomal protein L16	MRPL16	54948	ENSG00000166902			Mrpl16 (MGI:2137219)
chr11	59829267	59845500	11q13	11q12.1	609342	GIF, IF	Gastric intrinsic factor	GIF	2694	ENSG00000134812		Intrinsic factor deficiency, 261000 (3), Autosomal recessive	Gif (MGI:1202394)
chr11	59852807	59866567	11q11-q12	11q12.1	189905	TCN1, TC1	Transcobalamin I	TCN1	6947	ENSG00000134827			
chr11	60056627	60071115	11q12-q13	11q12.1	606498	MS4A3, HTM4, CD20L	Membrane-spanning 4-domains, subfamily A, member 3	MS4A3	932	ENSG00000149516			Ms4a3 (MGI:2158468)
chr11	60088260	60098466	11q13	11q12.1	147138	MS4A2, FCER1B	Membrane-spanning 4-domains, subfamily A, member 2 (Fc fragment of IgE, high affinity I, receptor for, beta polypeptide)	MS4A2	2206	ENSG00000149534		{Atopy, susceptibility to}, 147050 (3), Autosomal dominant	Ms4a2 (MGI:95495)
chr11	60171606	60184665	11q12-q13	11q12.2	606548	MS4A6A, MS4A6	Membrane-spanning 4-domains, subfamily A, member 6A	MS4A6A	64231	ENSG00000110077			Ms4a6d (MGI:1916024)
chr11	60201252	60243123	11q12-q13.1	11q12.2	608401	MS4A4E	Membrane-spanning 4-domains, subfamily A, member 4E	MS4A4E	643680	ENSG00000214787			
chr11	60280540	60308971	11q12-q13	11q12.2	606547	MS4A4A, MS4A4	Membrane-spanning 4-domains, subfamily A, member 4A	MS4A4A	51338	ENSG00000110079			Ms4a4a (MGI:3643932)
chr11	60334881	60340967	11q12-q13.1	11q12.2	608402	MS4A6E	Membrane-spanning 4-domains, subfamily A, member 6E	MS4A6E	245802	ENSG00000166926			
chr11	60378484	60395953	11q12-q13	11q12.2	606502	MS4A7, CFFM4	Membrane-spanning 4-domains, subfamily A, member 7	MS4A7	58475	ENSG00000166927			Ms4a7 (MGI:1918846)
chr11	60429588	60447791	11q12-q13	11q12.2	606499	MS4A5, TETM4, CD20L2	Membrane-spanning 4-domains, subfamily A, member 5	MS4A5	64232	ENSG00000166930			Ms4a5 (MGI:2670985)
chr11	60455808	60470751	11q13	11q12.2	112210	MS4A1, CD20, CVID5	Membrane-spanning 4-domains, subfamily A, member 1	MS4A1	931	ENSG00000156738		Immunodeficiency, common variable, 5, 613495 (3), Autosomal recessive	Ms4a1 (MGI:88321)
chr11	60492742	60507429	11q12-q13	11q12.2	606550	MS4A12	Membrane-spanning 4-domains, subfamily A, member 12	MS4A12	54860	ENSG00000071203			Ms4a12 (MGI:2685812)
chr11	60699573	60715810	11q12-q13	11q12.2	606549	MS4A8B	Membrane-spanning 4-domains, subfamily A, member 8B	MS4A8	83661	ENSG00000166959			Ms4a8a (MGI:1927657)
chr11	60785331	60801304	11q12-q13.1	11q12.2	608403	MS4A10	Membrane-spanning 4-domains, subfamily A, member 10	MS4A10	341116	ENSG00000172689			Ms4a10 (MGI:1917076)
chr11	60841955	60851087	11q12	11q12.2	611293	CCDC86, CYCLON	Coiled-coil domain-containing protein 86	CCDC86	79080	ENSG00000110104			Ccdc86 (MGI:1277220)
chr11	60850924	60855970	11q12.2	11q12.2	604837	PTGDR2, GPR44	Prostaglandin D2 receptor 2	PTGDR2	11251	ENSG00000183134			Ptgdr2 (MGI:1330275)
chr11	60867541	60875692	11q12.2	11q12.2	195000	ZP1, OOMD1	Zona pellucida glycoprotein 1	ZP1	22917	ENSG00000149506		Oocyte maturation defect 1, 615774 (3), Autosomal recessive	Zp1 (MGI:103073)
chr11	60890546	60906588	11q12.2	11q12.2	608330	PRPF19, PRP19, PSO4, NMP200	Precursor mRNA-processing factor 19, S. cerevisiae, homolog of	PRPF19	27339	ENSG00000110107			Prpf19 (MGI:106247)
chr11	60924440	60937158	11q12.2	11q12.2	617363	TMEM132A, KIAA1583	Transmembrane protein 132A	TMEM132A	54972	ENSG00000006118			Tmem132a (MGI:2147810)
chr11	60937082	60952080	11q12	11q12.2	610408	SLC15A3, PHT2	Solute carrier family 15 (oligopeptide transporter), member 3	SLC15A3	51296	ENSG00000110446			Slc15a3 (MGI:1929691)
chr11	60971640	61020376	Chr.11	11q12.2	186720	CD6, TP120	CD6 antigen	CD6	923	ENSG00000013725			Cd6 (MGI:103566)
chr11	61093962	61127851	11q13	11q12.2	153340	CD5, LEU1	CD5 antigen (p56-62)	CD5	921	ENSG00000110448			Cd5 (MGI:88340)
chr11	61130255	61161443	11q12.2	11q12.2	610038	VPS37C	Vacuolar protein sorting 37, yeast, homolog of, C	VPS37C	55048	ENSG00000167987			Vps37c (MGI:2147661)
chr11	61222348	61231694	11q13	11q12.2	169720	PGA4	Pepsinogen A4	PGA4	643847	ENSG00000229183			
chr11	61241175	61251443	11q13	11q12.2	169730	PGA5	Pepsinogen A5	PGA5	5222	ENSG00000256713	pter-5'HRAS--5'INS--cen		
chr11	61258285	61295315	11q11	11q12.2	611115	VWC1, URG11	von Willebrand factor C and EGF domain-containing protein	VWCE	220001	ENSG00000167992			Vwce (MGI:1919018)
chr11	61299446	61333211	11q12-q13	11q12.2	600045	DDB1	Damage-specific DNA binding protein 1, 127kD	DDB1	1642	ENSG00000167986			Ddb1 (MGI:1202384)
chr11	61333181	61353425	11q12.2	11q12.2	615844	DAK	Dihydroxyacetone kinase 2, S. cerevisiae, homolog of	TKFC	26007	ENSG00000149476			Tkfc (MGI:2385084)
chr11	61362000	61378223	11q12.2	11q12.2	614459	TMEM138, JBTS16	Transmembrane protein 138	TMEM138	51524	ENSG00000149483		Joubert syndrome 16, 614465 (3), Autosomal recessive	Tmem138 (MGI:1920232)
chr11	61391981	61398862	11q12.2	11q12.2	613277	TMEM216, JBTS2, CORS2, MKS2	Transmembrane protein 216	TMEM216	51259	ENSG00000187049		Joubert syndrome 2, 608091 (3), Autosomal recessive; Meckel syndrome 2, 603194 (3), Autosomal recessive	Tmem216 (MGI:1920020)
chr11	61430124	61446766	11q13.1	11q12.2	613019	SDHAF2, SDH5, PGL2	Succinate dehydrogenase complex assembly factor 2	SDHAF2	54949	ENSG00000167985		Paragangliomas 2, 601650 (3), Autosomal dominant	Sdhaf2 (MGI:1913322)
chr11	61513715	61588403	11q13	11q12.2	604146	SYT7	Synaptotagmin 7	SYT7	9066	ENSG00000011347			Syt7 (MGI:1859545)
chr11	61680183	61747001	11q12.2	11q12.2	614015	DAGLA, KIAA0659	Diacylglycerol lipase, alpha	DAGLA	747	ENSG00000134780			Dagla (MGI:2677061)
chr11	61752616	61788517	11q12-q13.1	11q12.2	608329	C11orf9, KIAA0954	Chromosome 11 open reading frame 9	MYRF	745	ENSG00000124920			Myrf (MGI:2684944)
chr11	61789129	61792612	11q12	11q12.2	617615	TMEM258, C11orf10	Transmembrane protein 258	TMEM258	746	ENSG00000134825			Tmem258 (MGI:1916288)
chr11	61792636	61797243	11q12	11q12.2	600393	FEN1	Flap structure-specific endonuclease 1	FEN1	2237	ENSG00000168496			Fen1 (MGI:102779)
chr11	61799624	61817056	11q12-q13.1	11q12.2	606148	FADS1	Fatty acid desaturase 1	FADS1	3992	ENSG00000149485			Fads1 (MGI:1923517)
chr11	61816202	61867353	11q12-q13.1	11q12.2	606149	FADS2	Fatty acid desaturase 2	FADS2	9415	ENSG00000134824			Fads2 (MGI:1930079)
chr11	61873522	61892223	11q12-q13.1	11q12.2	606150	FADS3	Fatty acid desaturase 3	FADS3	3995	ENSG00000221968			Fads3 (MGI:1928740)
chr11	61946721	61964464	11q13	11q12.3	607854	BEST1, VMD2, ARB, RP50	Bestrophin 1	BEST1	7439	ENSG00000167995		Bestrophinopathy, autosomal recessive, 611809 (3); Macular dystrophy, vitelliform, 2, 153700 (3), Autosomal dominant; Microcornea, rod-cone dystrophy, cataract, and posterior staphyloma, 193220 (3), Autosomal dominant; Retinitis pigmentosa, concentric, 613194 (3); Retinitis pigmentosa-50, 613194 (3); Vitreoretinochoroidopathy, 193220 (3), Autosomal dominant	Best1 (MGI:1346332)
chr11	61964284	61967659	11q12-q13	11q12.3	134770	FTH1, FTHL6, HFE5	Ferritin, heavy polypeptide 1	FTH1	2495	ENSG00000167996	mutation identified in 1 family	?Hemochromatosis, type 5, 615517 (3), Autosomal dominant	Fth1 (MGI:95588)
chr11	62123972	62155473	11q12.3	11q12.3	604411	INCENP	Inner centromere protein	INCENP	3619	ENSG00000149503			Incenp (MGI:1313288)
chr11	62190237	62193536	11q12.3	11q12.3	615060	SCGB1D1, LPNA	Secretoglobin, family 1D, member 1	SCGB1D1	10648	ENSG00000168515	previously mapped to 15q12-q13		
chr11	62208667	62213938	11q12.3	11q12.3	604398	SCGB2A1, MGB2, LPNC	Secretoglobin, family 2A, member 1 (mammaglobin 2)	SCGB2A1	4246	ENSG00000124939			
chr11	62242251	62244807	11q12.3	11q12.3	615061	SCGB1D2, LPNB	Secretoglobin, family 1D, member 2	SCGB1D2	10647	ENSG00000124935	previously mapped to 10q23		
chr11	62270129	62273159	11q12.3-q13.1	11q12.3	605562	MGB1, SCGB2A2	Mammaglobin 1 (secretoglobin, family 2A, member 2)	SCGB2A2	4250	ENSG00000110484			
chr11	62296281	62299063	11q12.3	11q12.3	615062	SCGB1D4, IIS	Secretoglobin, family 1D, member 4	SCGB1D4	404552	ENSG00000197745			
chr11	62419034	62423205	11q12.3-q13.1	11q12.3	192020	SCGB1A1, UGB, CC10, CCSP	Secretoglobin, family 1A, member 1 (uteroglobin)	SCGB1A1	7356	ENSG00000149021			Scgb1a1 (MGI:98919)
chr11	62433541	62546859	11q12-q13	11q12.3	103390	AHNAK	AHNAK nucleoprotein (desmoyokin)	AHNAK	79026	ENSG00000124942			Ahnak (MGI:1316648)
chr11	62559600	62573987	11q12.3	11q12.3	130593	EEF1G, EF1G	Eukaryotic translation elongation factor 1, gamma	EEF1G	1937	ENSG00000254772			Eef1g (MGI:1914410)
chr11	62593202	62601839	11q12-q13.1	11q12.3	603947	MTA2, MTA1L1	Metastasis-associated protein 2	MTA2	9219	ENSG00000149480			Mta2 (MGI:1346340)
chr11	62612740	62615119	11q13	11q12.3	180721	ROM1, ROSP1, RP7	Rod outer segment membrane protein-1	ROM1	6094	ENSG00000149489	digenic RP with RDS	Retinitis pigmentosa 7, digenic, 608133 (3), Autosomal recessive, Autosomal dominant	Rom1 (MGI:97998)
chr11	62615295	62622174	11q12-q13	11q12.3	606374	B3GAT3, GLCATI, JDSCD	Beta-1,3-glucuronyltransferase 3	B3GAT3	26229	ENSG00000149541	pseudogene on chr.3	Multiple joint dislocations, short stature, craniofacial dysmorphism, with or without congenital heart defects, 245600 (3), Autosomal recessive	B3gat3 (MGI:1919977)
chr11	62624825	62646725	11q13-qter	11q12.3	104160	GANAB, PKD3	Neutral alpha-glucosidase AB	GANAB	23193	ENSG00000089597		Polycystic kidney disease 3, 600666 (3), Autosomal dominant	Ganab (MGI:1097667)
chr11	62646847	62653301	11q12.3	11q12.3	611349	INTS5, INT5, KIAA1698	Integrator complex subunit 5	INTS5	80789	ENSG00000185085			Ints5 (MGI:1923578)
chr11	62665252	62667450	11q12.3	11q12.3	617897	CSKMT, METTL12	Citrate synthase lysine methyltransferase	CSKMT	751071	ENSG00000214756			
chr11	62671653	62673689	11q12.3	11q12.3	616097	UQCC3, C11orf83, MC3DN9	Ubiquinol-cytochrome C reductase complex assembly factor 3	UQCC3	790955	ENSG00000204922	mutation identified in 1 MC3DN9 patient	?Mitochondrial complex III deficiency, nuclear type 9, 616111 (3), Autosomal recessive	Uqcc3 (MGI:2147553)
chr11	62676497	62679116	11q12.3	11q12.3	616378	UBXN1, SAKS1	UBX domain protein 1	UBXN1	51035	ENSG00000162191			Ubxn1 (MGI:1289301)
chr11	62690261	62709618	11q13	11q12.3	606158	BSCL2, SPG17, HMN5, PELD	Seipin	BSCL2	26580	ENSG00000168000		Encephalopathy, progressive, with or without lipodystrophy, 615924 (3), Autosomal recessive; Lipodystrophy, congenital generalized, type 2, 269700 (3), Autosomal recessive; Neuropathy, distal hereditary motor, type VA, 600794 (3), Autosomal dominant; Silver spastic paraplegia syndrome, 270685 (3), Autosomal dominant	Bscl2 (MGI:1298392)
chr11	62761538	62766714	11q13.1	11q12.3	602013	POLR2G	Polymerase (RNA) II (DNA directed) polypeptide G	POLR2G	5436	ENSG00000168002			Polr2g (MGI:1914960)
chr11	62792124	62805491	11q12-q13	11q12.3	602647	NXF1, TAP, MEX67	Nuclear RNA export factor 1	NXF1	10482	ENSG00000162231			Nxf1 (MGI:1858330)
chr11	62806859	62832090	11q12.3	11q12.3	603189	STX5, STX5A	Syntaxin 5	STX5	6811	ENSG00000162236			Stx5a (MGI:1928483)
chr11	62851977	62855884	11q13	11q12.3	603222	UHG, U22HG	U22 host gene	SNHG1	23642				
chr11	62852909	62853034	11q13	11q12.3	603223	RNU22	RNA, U22 small nucleolar	SNORD22	9304				
chr11	62853325	62853392	11q13	11q12.3	603230	RNU31	RNA, U31 small nucleolar	SNORD31	9298				
chr11	62853662	62853731	11q13	11q12.3	603229	RNU30	RNA, U30 small nucleolar	SNORD30	9299				
chr11	62853903	62853967	11q13	11q12.3	603228	RNU29	RNA, U29 small nucleolar	SNORD29	9297				
chr11	62854620	62854694	11q13	11q12.3	603227	RNU28	RNA, U28 small nucleolar	SNORD28	9300				
chr11	62855011	62855082	11q13	11q12.3	603226	RNU27	RNA, U27 small nucleolar	SNORD27	9301				
chr11	62855291	62855365	11q13	11q12.3	603225	RNU26	RNA, U26 small nucleolar	SNORD26	9302				
chr11	62855564	62855630	11q13	11q12.3	603224	RNU25	RNA, U25 small nucleolar	SNORD25	9303				
chr11	62856011	62888882	11q13	11q12.3	158070	SLC3A2, MDU1, NACAE	Solute carrier family 3 (activators of dibasic and neutral amino acid transport), member 2	SLC3A2	6520	ENSG00000168003	prob. 11q13		Slc3a2 (MGI:96955)
chr11	62908674	62921860	11q13	11q12.3	118510	CHRM1	Cholinergic receptor, muscarinic, 1	CHRM1	1128	ENSG00000168539			Chrm1 (MGI:88396)
chr11	62976596	62985022	11q13.1-q13.2	11q12.3	607582	SLC22A6, OAT1, PAHT	Solute carrier family 22 (organic anion transporter), member 6	SLC22A6	9356	ENSG00000197901			Slc22a6 (MGI:892001)
chr11	62992823	63015844	Chr.11	11q12.3	607581	SLC22A8, OAT3	Solute carrier family 22 (organic anion transporter), member 8	SLC22A8	9376	ENSG00000149452			Slc22a8 (MGI:1336187)
chr11	63079939	63144220	11q12.3	11q12.3	611698	SLC22A24	Solute carrier family 22, member 24	SLC22A24	283238	ENSG00000197658			Slc22a19 (MGI:2442751)
chr11	63162263	63243522	11q12.3	11q12.3	610792	UST6	Organic anion transporter UST6	SLC22A25	387601	ENSG00000196600			Slc22a29,Slc22a28,Slc22a27,Slc22a30 (MGI:2442750,MGI:3645714,MGI:3605624,MGI:3042283)
chr11	63268256	63311982	11q12.3	11q12.3	607580	SLC22A10, OAT5	Solute carrier family 22 (organic anion/cation transporter), member 10	SLC22A10	387775	ENSG00000184999			
chr11	63368870	63410877	11q12.3	11q12.3	607579	SLC22A9, OAT4, UST3	Solute carrier family 22 (organic anion/cation transporter), member 9	SLC22A9	114571	ENSG00000149742			
chr11	63506051	63516773	11q13	11q12.3	606096	LGALS12	Lectin, galactoside-binding, soluble, 12	LGALS12	85329	ENSG00000133317			Lgals12 (MGI:1929094)
chr11	63536800	63546457	11q23	11q12.3	605092	RARRES3, TIG3	Retinoic acid receptor responder 3	RARRES3	5920	ENSG00000133321			
chr11	63552758	63565071	11q12.3	11q12.3	613866	HRASLS2	HRAS-like suppressor 2	HRASLS2	54979	ENSG00000133328			
chr11	63574461	63616925	11q12.3-q13.1	11q12.3-q13.1	613867	PLA2G16, HRASLS3, HRSL3, HREV107	Phospholipase A2, group XVI	PLA2G16	11145	ENSG00000176485			Pla2g16 (MGI:2179715)
chr11	63600000	77400000	11q13		617697	CUPID2	CCND1 upstream intergenic DNA repair 2, noncoding						
chr11	63600000	110600000	11q13-q22		133220	ESA4	Esterase-A4	ESA4	2090				
chr11	63600000	77400000	11q13		611958	HPC14	Prostate cancer, hereditary, 14		100188867		associated with rs7931342	{Prostate cancer, hereditary, 14}, 611958 (2)	
chr11	63600000	77400000	11q13		600319	IDDM4	Insulin-dependent diabetes mellitus-4	IDDM4	3403			{Diabetes mellitus, insulin-dependent, 4}, 600319 (2)	
chr11	63600000	77400000	11q13		166750	OTDD, DEL11q13, C11DELq13	Otodental dysplasia (chromosome 11q13 deletion syndrome)				between rs9666584 and rs41408348	Otodental dysplasia chromosome deletion syndrome, 166750 (4), Autosomal dominant	
chr11	63600000	77400000	11q13		169710	PGA3	Pepsinogen A3	PGA3	643834	ENSG00000229859			
chr11	63600000	77400000	11q13		165110	SEA	Oncogene SEA (S13 avian erythroblastosis)	SEA	6395				
chr11	63600000	77400000	11q13		607088	SMAR	Spinal muscular atrophy, chronic distal, autosomal recessive		246751		no mutations found in IGHMBP2	Spinal muscular atrophy, chronic distal, autosomal recessive, 607088 (2), Autosomal recessive	
chr11	63600000	77400000	11q13		191181	ST3	Suppression of tumorigenicity-3 (tumor-suppressor gene, HELA cell type)	ST3	6762			Cervical carcinoma, 191181 (2)	
chr11	63624081	63671973	11q13.1	11q13.1	609369	ATL3, HSN1F	Atlastin 3	ATL3	25923	ENSG00000184743		Neuropathy, hereditary sensory, type IF, 615632 (3), Autosomal dominant	Atl3 (MGI:1924270)
chr11	63681314	63759890	11q13	11q13.1	604249	RTN3, NSPL2	Reticulon 3	RTN3	10313	ENSG00000133318	pseudogene on chr.4		Rtn3 (MGI:1339970)
chr11	63759891	63768641	11q13	11q13.1	615699	C11orf95	Chromosome 11 open reading frame 95	C11orf95	65998	ENSG00000188070			2700081O15Rik (MGI:1919667)
chr11	63838927	63911019	11q12-q13	11q13.1	600526	MARK2, EMK1	MAP/microtubule affinity-regulating kinase 2	MARK2	2011	ENSG00000072518			Mark2 (MGI:99638)
chr11	63911220	63916843	11q13.1	11q13.1	616019	RCOR2	Rest corepressor 2	RCOR2	283248	ENSG00000167771			Rcor2 (MGI:1859854)
chr11	63974606	63976542	11q13	11q13.1	123870	COX8A	Cytochrome c oxidase, subunit VIIIA	COX8A	1351	ENSG00000176340	mutation identified in 1 COX4D patient	?Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Cox8a (MGI:105959)
chr11	63985852	63998419	11q13.1	11q13.1	608337	OTUB1, OTU1, OTB1	OTU domain-containing ubiquitin aldehyde-binding protein 1	OTUB1	55611	ENSG00000167770			
chr11	63998553	64166651	11q13.1	11q13.1	610400	MACROD1, LRP16	Macro domain-containing 1	MACROD1	28992	ENSG00000133315			Macrod1 (MGI:2147583)
chr11	64035969	64127288	11q12-q13	11q13.1	604806	FLRT1	Fibronectin-like domain-containing leucine-rich transmembrane protein-1	FLRT1	23769	ENSG00000126500			Flrt1 (MGI:3026647)
chr11	64185271	64204547	11q13	11q13.1	605063	STIP1, HOP	Stress-induced phosphoprotein 1	STIP1	10963	ENSG00000168439			Stip1 (MGI:109130)
chr11	64206661	64223890	11q12	11q13.1	607901	KIND3, URP2, MIG2B, FERMT3	Kindlin 3	FERMT3	83706	ENSG00000149781		Leukocyte adhesion deficiency, type III, 612840 (3), Autosomal recessive	Fermt3 (MGI:2147790)
chr11	64223798	64226253	11q13	11q13.1	610470	TRPT1	Transfer RNA phosphotransferase 1	TRPT1	83707	ENSG00000149743			Trpt1 (MGI:1333115)
chr11	64230280	64234280	11q13	11q13.1	604189	DANJC4, HSPF2	DnaJ, E. coli, homolog of, subfamily C, member 4 (heat-shock 40kD protein 2)	DNAJC4	3338	ENSG00000110011			Dnajc4 (MGI:1927346)
chr11	64234583	64239263	11q13	11q13.1	601398	VEGFB, VRF	Vascular endothelial growth factor B	VEGFB	7423	ENSG00000173511			Vegfb (MGI:106199)
chr11	64240940	64244134	11q13.1-q13.3	11q13.1	186946	FKBP2	FK506-binding protein-2, 13kD	FKBP2	2286	ENSG00000173486			Fkbp2 (MGI:95542)
chr11	64244478	64246940	11q13	11q13.1	601140	PPP1R14B, PLCB3N, PNG	Protein phosphatase 1, regulatory subunit 14B	PPP1R14B	26472	ENSG00000173457			Ppp1r14b (MGI:107682)
chr11	64251522	64269451	11q13	11q13.1	600230	PLCB3	Phospholipase C, beta 3 (phosphatidylinositol-specific)	PLCB3	5331	ENSG00000149782	within 900kb of MEN1		Plcb3 (MGI:104778)
chr11	64269827	64284703	11q13.1	11q13.1	603167	BAD, BCL2L8	BCL1 antagonist of cell death	BAD	572	ENSG00000002330			Bad (MGI:1096330)
chr11	64291301	64300030	11q13	11q13.1	605720	KCNK4, TRAAK	Potassium channel, subfamily K, member 4	KCNK4	50801	ENSG00000182450			Kcnk4 (MGI:1298234)
chr11	64300390	64304766	11q13.1	11q13.1	617511	CATSPERZ, TEX40	Cation channel, sperm-associated, auxiliary subunit zeta	CATSPERZ	25858	ENSG00000219435			Catsperz (MGI:1914327)
chr11	64305527	64316742	11q12	11q13.1	601998	ESRRA, ESRL1	Estrogen-related receptor, alpha	ESRRA	2101	ENSG00000173153			
chr11	64318087	64321822	11q13	11q13.1	606583	PRDX5, AOEB166	Peroxiredoxin 5	PRDX5	25824	ENSG00000126432			Prdx5 (MGI:1859821)
chr11	64340202	64357533	11q13.1	11q13.1	611205	CCDC88B, GIPIE	Coiled-coil domain-containing protein 88B	CCDC88B	283234	ENSG00000168071			Ccdc88b (MGI:1925567)
chr11	64359152	64372214	11q13.1	11q13.1	603606	RPS6KA4, RSKB, MSK2	Ribosomal protein S6 kinase, 90kD, 4	RPS6KA4	8986	ENSG00000162302			Rps6ka4 (MGI:1930076)
chr11	64555600	64572874	11q13	11q13.1	607097	SLC22A11, OAT4	Solute carrier family 22 (organic anion/cation transporter), member 11	SLC22A11	55867	ENSG00000168065			
chr11	64590809	64603249	11q13	11q13.1	607096	SLC22A12, OAT4L, URAT1	Solute carrier family 22 (urate transporter), member 12	SLC22A12	116085	ENSG00000197891		Hypouricemia, renal, 220150 (3), Autosomal recessive	Slc22a12 (MGI:1195269)
chr11	64606173	64723187	11q13	11q13.1	600566	NRXN2	Neurexin 2	NRXN2	9379	ENSG00000110076			Nrxn2 (MGI:1096362)
chr11	64726910	64745480	11q13	11q13.1	605577	RASGRP2, CDC25L	Ras guanyl nucleotide-releasing protein 2	RASGRP2	10235	ENSG00000068831	mutation identified in 1 BDPLT18 family	?Bleeding disorder, platelet-type, 18, 615888 (3), Autosomal recessive	Rasgrp2 (MGI:1333849)
chr11	64746388	64760714	11q13	11q13.1	608455	PYGM	Phosphorylase, glycogen, muscle	PYGM	5837	ENSG00000068976		McArdle disease, 232600 (3), Autosomal recessive	Pygm (MGI:97830)
chr11	64764603	64778843	11q13	11q13.1	601516	SF1, ZNF162, D11S636, ZFM1	Splicing factor 1 (zinc finger protein-162)	SF1	7536	ENSG00000168066			
chr11	64786913	64803253	11q13	11q13.1	603166	MAP4K2, RAB8IP, GCK	Mitogen-activating protein kinase kinase kinase kinase 2 (RAB8-interacting protein; germinal center kinase)	MAP4K2	5871	ENSG00000168067			Map4k2 (MGI:1346883)
chr11	64803513	64811293	11q13	11q13.1	613733	MEN1	Menin	MEN1	4221	ENSG00000133895	linked distal to PYGM	Adrenal adenoma, somatic (3); Angiofibroma, somatic (3); Carcinoid tumor of lung (3); Lipoma, somatic (3); Multiple endocrine neoplasia 1, 131100 (3), Autosomal dominant; Parathyroid adenoma, somatic (3)	Men1 (MGI:1316736)
chr11	64823808	64844685	11q13	11q13.1	613991	CDC42BPG, MRCKG	CDC42-binding protein kinase, gamma	CDC42BPG	55561	ENSG00000171219			Cdc42bpg (MGI:2652845)
chr11	64852726	64879712	11q13	11q13.1	605888	EHD1	EH domain-containing 1 protein	EHD1	10938	ENSG00000110047			Ehd1 (MGI:1341878)
chr11	64891136	64891245	11q13.1	11q13.1	610939	MIR192, MIRN192	Micro RNA 192	MIR192	406967				
chr11	64891354	64891438	11q13.1	11q13.1	610941	MIR194-2, MIRN194-2	Micro RNA 194-2	MIR194-2	406970				
chr11	64894531	64917249	11q13.1	11q13.1	616225	ATG2A, KIAA0404	Autophagy 2, S. cerevisiae, homolog of, A	ATG2A	23130	ENSG00000110046			Atg2a (MGI:1916291)
chr11	64917552	64934477	11q13	11q13.1	601644	PPP2R5B	Protein phosphatase-2, regulatory subunit B (B56), beta isoform	PPP2R5B	5526	ENSG00000068971			Ppp2r5b (MGI:2388480)
chr11	64934470	64938130	11q13.1	11q13.1	609651	GPHA2, GPA2	Glycoprotein hormone, alpha-2	GPHA2	170589	ENSG00000149735			Gpha2 (MGI:2156541)
chr11	64938229	64972097	11q13.1	11q13.1	617130	MAJIN, C11orf85	Membrane-anchored junction protein	MAJIN	283129	ENSG00000168070			Majin (MGI:1923913)
chr11	64987944	64997044	11q13.1	11q13.1	614983	BATF2, SARI	Basic leucine zipper transcription factor, ATF-like 2	BATF2	116071	ENSG00000168062			Batf2 (MGI:1921731)
chr11	65014112	65022184	11q13	11q13.1	601175	ARL2	ADP=ribosylation factor-like 2	ARL2	402	ENSG00000213465			Arl2 (MGI:1928393)
chr11	65027407	65040571	11q13	11q13.1	605964	SNX15	Sorting nexin 15	SNX15	29907	ENSG00000110025			Snx15 (MGI:1916274)
chr11	65044817	65059019	11q12	11q13.1	602640	NAALADL1, I100	N-acetylated alpha-linked acidic dipeptidase-like 1	NAALADL1	10004	ENSG00000168060			Naaladl1 (MGI:2685810)
chr11	65061008	65084142	11q13.1	11q13.1	609374	CDCA5, SORORIN	Cell division cycle-associated protein 5 (sororin)	CDCA5	113130	ENSG00000146670			Cdca5 (MGI:1915099)
chr11	65096114	65111859	11q13.1	11q13.1	615738	VPS51, ANG2	Vacuolar protein sorting 51, S. cerevisiae, homolog of	VPS51	738	ENSG00000149823			Vps51 (MGI:1915755)
chr11	65111853	65116234	11q13	11q13.1	603414	TM7SF2, ANG1	Transmembrane 7 superfamily, member 2	TM7SF2	7108	ENSG00000149809			Tm7sf2 (MGI:1920416)
chr11	65116402	65117737	11q13	11q13.1	604575	ZNHIT2, C11orf5, FON	Zinc finger HIT domain containing protein 2	ZNHIT2	741	ENSG00000174276			Znhit2 (MGI:1352481)
chr11	65120626	65122199	11q13	11q13.1	134690	FAU	Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived)	FAU	2197	ENSG00000149806			Fau (MGI:102547)
chr11	65122182	65127368	11q13	11q13.1	606866	MRPL49, NOF1	Mitochondrial ribosomal protein L49	MRPL49	740	ENSG00000149792			Mrpl49 (MGI:108180)
chr11	65127278	65135177	11q13	11q13.1	608046	SYVN1, HRD1, KIAA1810	Synovial apoptosis inhibitor 1	SYVN1	84447	ENSG00000162298			Syvn1 (MGI:1921376)
chr11	65170153	65173665	11q13.1	11q13.1	614030	SPDYC, RINGOC	Speedy, xenopus, homolog of, C	SPDYC	387778	ENSG00000204710			
chr11	65181214	65212005	11q13	11q13.1	114220	CAPN1, SPG76	Calpain, large polypeptide L1	CAPN1	823	ENSG00000014216		Spastic paraplegia 76, autosomal recessive, 616907 (3), Autosomal recessive	Capn1 (MGI:88263)
chr11	65213839	65242756	11q13.1	11q13.1	611696	SLC22A20, OAT6	Solute carrier family 22, member 20	SLC22A20P	440044				
chr11	65314817	65322428	11q12-q13	11q13.1	606132	CDC42EP2, CEP2, BORG1	CDC42 effector protein 2	CDC42EP2	10435	ENSG00000149798			Cdc42ep2 (MGI:1929744)
chr11	65333753	65354259	11q13	11q13.1	601671	DPF2, REQ, UBID4	D4, zinc, and double PHD fingers family, member 2	DPF2	5977	ENSG00000133884			Dpf2 (MGI:109529)
chr11	65375191	65383700	11q13.1	11q13.1	610825	SLC25A45	Solute carrier family 25, member 45	SLC25A45	283130	ENSG00000162241			Slc25a45 (MGI:2147731)
chr11	65422797	65445539	11q13.1	11q13.1	612769	NEAT1, TNCRNA	Noncoding nuclear-enriched abundant transcript 1	NEAT1	283131				
chr11	65497737	65506515	11q13.1	11q13.1	607924	MALAT1, PRO1073	Metastasis-associated lung adenocarcinoma transcript 1	MALAT1	378938		fused with TFEB in renal tumors		
chr11	65525076	65538710	11q13	11q13.1	607982	SCYL1, NTKL, SCAR21	SCY1-like 1	SCYL1	57410	ENSG00000142186		Spinocerebellar ataxia, autosomal recessive 21, 616719 (3), Autosomal recessive	Scyl1 (MGI:1931787)
chr11	65538558	65558388	11q12	11q13.1	602090	LTBP3, LTBP2, DASS, GPHYSD3	Latent transforming growth factor beta binding protein-3	LTBP3	4054	ENSG00000168056		Dental anomalies and short stature, 601216 (3), Autosomal recessive; Geleophysic dysplasia 3, 617809 (3), Autosomal dominant	Ltbp3 (MGI:1101355)
chr11	65572348	65574197	11q13.1	11q13.1	616128	FAM89B, MTVR, LRAP25	Family with sequence similarity 89, member B	FAM89B	23625	ENSG00000176973			Fam89b (MGI:106595)
chr11	65592854	65595995	11q13	11q13.1	603940	KCNK7	Potassium channel, subfamily K, member 7	KCNK7	10089	ENSG00000173338			Kcnk7 (MGI:1341841)
chr11	65597754	65614248	11q13.1-q13.3	11q13.1	600050	MAP3K11, MLK3, PTK1, SPRK	Mitogen-activated protein kinase kinase kinase 11	MAP3K11	4296	ENSG00000173327			Map3k11 (MGI:1346880)
chr11	65614310	65637438	11q13.1	11q13.1	617657	PCNX3	Pecanex, Drosophila, homolog of, 3	PCNX3	399909	ENSG00000197136			Pcnx3 (MGI:1861733)
chr11	65638106	65650929	11q13.3	11q13.1	602180	SIPA1, SPA1	Signal-induced proliferation-associated gene-1	SIPA1	6494	ENSG00000213445			Sipa1 (MGI:107576)
chr11	65653595	65662971	11q12-q13	11q13.1	164014	RELA, NFKB3	v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (p65))	RELA	5970	ENSG00000173039			Rela (MGI:103290)
chr11	65712001	65719605	11q13	11q13.1	601409	KAT5, HTATIP, TIP60, ESA1, PLIP	K(lysine) acetyltransferase 5	KAT5	10524	ENSG00000172977			Kat5 (MGI:1932051)
chr11	65717672	65720937	11q13.2	11q13.1	610330	RNASEH2C, AYP1, FLJ20974, AGS3	Ribonuclease H2, subunit C	RNASEH2C	84153	ENSG00000172922		Aicardi-Goutieres syndrome 3, 610329 (3), Autosomal recessive	Rnaseh2c (MGI:1915459)
chr11	65773897	65780590	11q13.1	11q13.1	614367	AP5B1, DKFZp761E198	Adaptor-related protein complex 5, beta-1 subunit	AP5B1	91056	ENSG00000254470			Ap5b1 (MGI:2685808)
chr11	65787033	65797218	11q13	11q13.1	602313	OVOL1	Ovo, Drosophila, homolog-like, 1	OVOL1	5017	ENSG00000172818			Ovol1 (MGI:1330290)
chr11	65854810	65858332	11q13	11q13.1	601442	CFL1	Cofilin 1 (non-muscle)	CFL1	1072	ENSG00000172757			Cfl1 (MGI:101757)
chr11	65860243	65867652	11q13	11q13.1	606591	MUS81	Mus81, S. cerevisiae, homolog of	MUS81	80198	ENSG00000172732			Mus81 (MGI:1918961)
chr11	65866440	65872933	11q13	11q13.1	604633	EFEMP2, FBLN4, UPH1, ARCL1B	EGF-containing fibulin-like extracellular matrix protein 2 (fibulin 4)	EFEMP2	30008	ENSG00000172638		Cutis laxa, autosomal recessive, type IB, 614437 (3), Autosomal recessive	Efemp2 (MGI:1891209)
chr11	65879812	65883740	11q13.1	11q13.1	602364	CTSW	Cathepsin W	CTSW	1521	ENSG00000172543			Ctsw (MGI:1338045)
chr11	65883739	65888538	11q13.1	11q13.1	608296	FIBP, TROFAS	Fibroblast growth factor, acidic, intracellular binding protein	FIBP	9158	ENSG00000172500		Thauvin-Robinet-Faivre syndrome, 617107 (3), Autosomal recessive	Fibp (MGI:1926233)
chr11	65890403	65891634	11q13.1	11q13.1	605360	DIPA	Delta antigen-interacting protein A	CCDC85B	11007	ENSG00000175602			Ccdc85b (MGI:2147607)
chr11	65892135	65900525	11q13	11q13.1	136515	FOSL1	FOS-like antigen-1	FOSL1	8061	ENSG00000175592			Fosl1 (MGI:107179)
chr11	65919256	65921576	11q13.1	11q13.1	602289	DRAP1	DR1-associated protein 1	DRAP1	10589	ENSG00000175550			Drap1 (MGI:1913806)
chr11	65961688	65980135	Chr.11	11q13.1	605941	SART1, HOMS1	Squamous cell carcinoma antigen recognized by T cells 1	SART1	9092	ENSG00000175467			Sart1 (MGI:1309453)
chr11	66002078	66004148	11q13.1	11q13.1	603811	BANF1, BAF, NGPS	Barrier to autointegration factor 1	BANF1	8815	ENSG00000175334		Nestor-Guillermo progeria syndrome, 614008 (3), Autosomal recessive	Banf1 (MGI:1346330)
chr11	66011990	66013504	11q13	11q13.1	601891	CST6	Cystatin-M	CST6	1474	ENSG00000175315			Cst6 (MGI:1920970)
chr11	66016751	66026517	11q13.1	11q13.1	606389	CATSPER1, CATSPER, SPGF7	Cation channel, sperm-associated, 1	CATSPER1	117144	ENSG00000175294		Spermatogenic failure 7, 612997 (3), Autosomal recessive	Catsper1 (MGI:2179947)
chr11	66040764	66049179	11q13	11q13.1	608234	GAL3ST3, GAL3ST2	Galactose-3-O-sulfotransferase 3	GAL3ST3	89792	ENSG00000175229			Gal3st3 (MGI:3617843)
chr11	66052344	66068910	Chr.11	11q13.1	605591	SF3B2, SF3B145, SAP145	Splicing factor 3B, subunit 2	SF3B2	10992	ENSG00000087365			Sf3b2 (MGI:2441856)
chr11	66070275	66244746	11q13.1	11q13.1-q13.2	607492	PACS1, SHMS, MRD17	Phosphofurin acidic cluster sorting protein 1	PACS1	55690	ENSG00000175115		Schuurs-Hoeijmakers syndrome, 615009 (3), Autosomal dominant	Pacs1 (MGI:1277113)
chr11	66257293	66267860	11q12-q13	11q13.2	611729	KLC2, SPOAN	Kinesin, light chain 2	KLC2	64837	ENSG00000174996		Spastic paraplegia, optic atrophy, and neuropathy, 609541 (3), Autosomal recessive	Klc2 (MGI:107953)
chr11	66268525	66277491	11q13.1	11q13.2	612565	RAB1B	Ras-associated protein RAB1B	RAB1B	81876	ENSG00000174903			Rab1b (MGI:1923558)
chr11	66278200	66284213	11q13.2	11q13.2	611288	CNIH2, CNIL	Cornichon, Drosophila, homolog of, 2	CNIH2	254263	ENSG00000174871			Cnih2 (MGI:1277225)
chr11	66284579	66289166	11q13	11q13.2	611484	YIF1A, YIF1	Yip1-interacting factor, S. cerevisiae, homolog of, A	YIF1A	10897	ENSG00000174851			Yif1a (MGI:1915340)
chr11	66314486	66317043	11q13	11q13.2	606064	CD248, TEM1	CD248 antigen	CD248	57124	ENSG00000174807			Cd248 (MGI:1917695)
chr11	66337332	66345124	11q13.1-q13.2	11q13.2	606259	BRMS1	Breast cancer metastasis suppressor 1	BRMS1	25855	ENSG00000174744			Brms1 (MGI:2388804)
chr11	66345371	66347689	11q13.2	11q13.2	605517	B4GAT1, B3GNT1, IGNT, IGAT, MDDGA13	Beta-1,4glucuronyltransferase 1	B4GAT1	11041	ENSG00000174684		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 13, 615287 (3), Autosomal recessive	B4gat1 (MGI:1919680)
chr11	66362520	66372475	11q13	11q13.2	602110	SLC29A2, HNP36, DER12	Solute carrier family 29 (nucleoside transporters), member 2 (hydrophobic nucleolar protein, 36kD)	SLC29A2	3177	ENSG00000174669			Slc29a2 (MGI:1345278)
chr11	66408921	66426706	11q13	11q13.2	608554	NPAS4, NXF	Neuronal PAS domain protein 4	NPAS4	266743	ENSG00000174576			Npas4 (MGI:2664186)
chr11	66435074	66438859	11q13.3	11q13.2	611826	MRPL11	Mitochondrial ribosomal protein L11	MRPL11	65003	ENSG00000174547			Mrpl11 (MGI:2137215)
chr11	66466326	66477336	11q13.2	11q13.2	609827	PELI3	Pellino, Drosophila, homolog of, 3	PELI3	246330	ENSG00000174516			Peli3 (MGI:1924963)
chr11	66480012	66509658	11q12-q13.1	11q13.2	606818	DPP3	Dipeptidyl peptidase III	DPP3	10072	ENSG00000254986			Dpp3 (MGI:1922471)
chr11	66510647	66533612	11q13	11q13.2	209901	BBS1	BBS1 gene	BBS1	582	ENSG00000174483		Bardet-Biedl syndrome 1, 209900 (3), Autosomal recessive, Digenic recessive	Bbs1 (MGI:1277215)
chr11	66546394	66563328	11q13-q14	11q13.2	102574	ACTN3, ACTN3D	Actinin, alpha-3	ACTN3	89	ENSG00000248746		[Alpha-actinin-3 deficiency], 617749 (3); [Sprinting performance], 617749 (3)	
chr11	66563462	66568575	11q13.1	11q13.2	603539	CTSF, CLN13	Cathepsin F	CTSF	8722	ENSG00000174080		Ceroid lipofuscinosis, neuronal, 13, Kufs type, 615362 (3), Autosomal recessive	Ctsf (MGI:1861434)
chr11	66593161	66606018	11q13	11q13.2	603864	CCS	Copper chaperone for superoxide dismutase	CCS	9973	ENSG00000173992			Ccs (MGI:1333783)
chr11	66616581	66629933	11q13	11q13.2	612409	RBM14, PSP2, COAA, SIP	RNA-binding motif protein 14	RBM14	10432	ENSG00000239306			Rbm14 (MGI:1929092)
chr11	66638616	66668384	11q13	11q13.2	602571	RBM4. LARK	RNA-binding motif protein-4 (lark, Drosophila, homolog of)	RBM4	5936	ENSG00000173933			Rbm4 (MGI:1100865)
chr11	66682495	66729360	11q13	11q13.2	604985	SPTBN2, SCA5, SCAR14	Spectrin, beta, nonerythrocytic, 2	SPTBN2	6712	ENSG00000173898		Spinocerebellar ataxia 5, 600224 (3), Autosomal dominant; Spinocerebellar ataxia, autosomal recessive 14, 615386 (3), Autosomal recessive	Sptbn2 (MGI:1313261)
chr11	66744735	66843515	11q13.2	11q13.2	616109	C11orf80	Chromosome 11 open reading frame 80	C11orf80	79703	ENSG00000173715			Gm960 (MGI:2685806)
chr11	66843411	66846531	11q13	11q13.2	605385	RCE1	Ras converting CAAX endopeptidase 1	RCE1	9986	ENSG00000173653			Rce1 (MGI:1336895)
chr11	66848521	66958417	11q13.4-q13.5	11q13.2	608786	PC	Pyruvate carboxylase	PC	5091	ENSG00000173599		Pyruvate carboxylase deficiency, 266150 (3), Autosomal recessive	Pcx (MGI:97520)
chr11	66857086	66860474	11q13.1	11q13.2	612810	LRFN4, SALM3	Leucine-rich repeat and fibronectin type III domain-containing protein 4	LRFN4	78999	ENSG00000173621			Lrfn4 (MGI:2385612)
chr11	67006772	67050862	11q13.2	11q13.2	606436	SYT12, SRG1	Synaptotagmin 12	SYT12	91683	ENSG00000173227			Syt12 (MGI:2159601)
chr11	67056817	67072016	11q14.3	11q13.2	605781	RHOD, ARHD, RHOHP1	Ras homolog gene family, member D	RHOD	29984	ENSG00000173156			Rhod (MGI:108446)
chr11	67119268	67258081	Chr.11	11q13.2	605657	FBXL11, FBL11	F-box and leucine-rich repeat protein-11	KDM2A	22992	ENSG00000173120			Kdm2a (MGI:1354736)
chr11	67266399	67286557	11cen-q13	11q13.2	109635	ADRBK1	Adrenergic, beta, receptor kinase-1	GRK2	156	ENSG00000173020			Grk2 (MGI:87940)
chr11	67289290	67302483	11q13.2	11q13.2	615126	ANKRD13D	Ankyrin repeat domain-containing protein 13D	ANKRD13D	338692	ENSG00000172932			Ankrd13d (MGI:1915673)
chr11	67303447	67312606	11q13.2	11q13.2	606780	SSH3	Slingshot, Drosophila, homolog of, 3	SSH3	54961	ENSG00000172830			Ssh3 (MGI:2683546)
chr11	67350764	67353595	11q13	11q13.2	611525	POLD4, POLDS, P12	Polymerase, DNA-directed, delta 4	POLD4	57804	ENSG00000175482			Pold4 (MGI:1916995)
chr11	67364167	67374176	11q13.3	11q13.2	607672	CLCF1, BSF3, CLC, CISS2	Cardiotrophin-like cytokine	CLCF1	23529	ENSG00000175505		Cold-induced sweating syndrome 2, 610313 (3), Autosomal recessive	Clcf1 (MGI:1930088)
chr11	67391951	67398411	11q13.1-q13.2	11q13.2	603761	RAD9A, RAD9	RAD9, S. pombe, homolog of	RAD9A	5883	ENSG00000172613			Rad9a (MGI:1328356)
chr11	67398180	67401904	11q13	11q13.2	176875	PPP1CA, PPP1A	Protein phosphatase-1, catalytic subunit, alpha isoform	PPP1CA	5499	ENSG00000172531			Ppp1ca (MGI:103016)
chr11	67403717	67410089	11q13.1	11q13.2	610831	TBC1D10C, CARABIN	TBC1 domain family, member 10C	TBC1D10C	374403	ENSG00000175463			Tbc1d10c (MGI:1922072)
chr11	67415677	67425606	11q13	11q13.2	613368	CARNS1, ATPGD1, KIAA1394	Carnosine synthase 1	CARNS1	57571	ENSG00000172508			Carns1 (MGI:2147595)
chr11	67435509	67437681	11q13.3	11q13.2	601577	PTPRCAP, LPAP	Protein tyrosine phosphatase, receptor type, c polypeptide-associated protein	PTPRCAP	5790	ENSG00000213402			Ptprcap (MGI:97811)
chr11	67438046	67443820	11q13.2	11q13.2	609849	CORO1B	Coronin 1B	CORO1B	57175	ENSG00000172725			Coro1b (MGI:1345963)
chr11	67452405	67461773	11q13.1	11q13.2	608965	CABP4, CRSD, CSNB2B	Calcium-binding protein 4	CABP4	57010	ENSG00000175544		Cone-rod synaptic disorder, congenital nonprogressive, 610427 (3), Autosomal recessive	Cabp4 (MGI:1920910)
chr11	67468178	67491107	11q13.3	11q13.2	605555	AIP, XAP2, ARA9, PITA1	Aryl hydrocarbon receptor-interacting protein	AIP	9049	ENSG00000110711		Pituitary adenoma 1, multiple types, 102200 (3), Autosomal dominant, Somatic mutation; Pituitary adenoma predisposition, 102000 (3), Autosomal dominant	Aip (MGI:109622)
chr11	67518946	67523427	11q13.1	11q13.2	607314	CABP2, DFNB93	Calcium-binding protein 2	CABP2	51475	ENSG00000167791		Deafness, autosomal recessive 93, 614899 (3), Autosomal recessive	Cabp2 (MGI:1352749)
chr11	67583594	67586652	11q13	11q13.2	134660	GSTP1, GST3	Glutathione S-transferase pi	GSTP1	2950	ENSG00000084207	formerly called GST1		Gstp2,Gstp-ps,Gstp1 (MGI:95865,MGI:3782108,MGI:95864)
chr11	67606851	67612540	11q13	11q13.2	161015	NDUFV1, UQOR1	NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kD	NDUFV1	4723	ENSG00000167792		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufv1 (MGI:107851)
chr11	67631302	67639559	11q13.1-q13.2	11q13.2	604648	TBX10	T-box 10	TBX10	347853	ENSG00000167800			Tbx10 (MGI:1261436)
chr11	67642550	67650828	11q13.2	11q13.2	614413	ACY3, HCBP1	Aminoacylase 3	ACY3	91703	ENSG00000132744			Acy3 (MGI:1918920)
chr11	67662161	67681223	Chr.11	11q13.2	601917	ALDH3B2, ALDH8	Aldehyde dehydrogenase 3 family, member B2	ALDH3B2	222	ENSG00000132746			
chr11	67991099	68004124	11q13	11q13.2	608204	UNC93B1, IIAE1	UNC93, C. elegans, homolog of, B1	UNC93B1	81622	ENSG00000110057		{Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 1}, 610551 (3)	Unc93b1 (MGI:1859307)
chr11	68008546	68029281	Chr.11	11q13.2	600466	ALDH3B1, ALDH7	Aldehyde dehydrogenase 3 family, member B1	ALDH3B1	221	ENSG00000006534			Aldh3b1 (MGI:1914939)
chr11	68030616	68036646	11q13	11q13.2	602141	NDUFS8	NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kD (NADH-coenzyme Q reductase)	NDUFS8	4728	ENSG00000110717	previously assigned to 3q28	Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Ndufs8 (MGI:2385079)
chr11	68038994	68053845	11q13.4-q13.5	11q13.2	604592	TCIRG1, TIRC7, OC116, OPTB1	T-cell immune regulator 1	TCIRG1	10312	ENSG00000110719		Osteopetrosis, autosomal recessive 1, 259700 (3), Autosomal recessive	Tcirg1 (MGI:1350931)
chr11	68052858	68121390	11q13.2	11q13.2	118491	CHKA, CHK	Choline kinase, alpha	CHKA	1119	ENSG00000110721			Chka (MGI:107760)
chr11	68154862	68213898	11q13	11q13.2	610881	KMT5B, SUV420H1, CGI85, MRD51	Lysine methyltransferase 5B	KMT5B	51111	ENSG00000110066		Mental retardation, autosomal dominant 51, 617788 (3), Autosomal dominant	Kmt5b (MGI:2444557)
chr11	68261334	68272000	11q13	11q13.2	610880	C11orf24	Chromosome 11 open reading frame 24	C11orf24	53838	ENSG00000171067			1810055G02Rik (MGI:1919306)
chr11	68298865	68449274	11q13.4	11q13.2	603506	LRP5, BMND1, LRP7, LR3, OPPG, VBCH2, OPTA1, EVR4, PCLD4	Low density lipoprotein receptor-related protein-5	LRP5	4041	ENSG00000162337		[Bone mineral density variability 1], 601884 (3), Autosomal dominant; Exudative vitreoretinopathy 4, 601813 (3), Autosomal recessive, Autosomal dominant; Hyperostosis, endosteal, 144750 (3), Autosomal dominant; Osteopetrosis, autosomal dominant 1, 607634 (3), Autosomal dominant; Osteoporosis-pseudoglioma syndrome, 259770 (3), Autosomal recessive; {Osteoporosis}, 166710 (3), Autosomal dominant; Osteosclerosis, 144750 (3), Autosomal dominant; Polycystic liver disease 4 with or without kidney cysts, 617875 (3), Autosomal dominant; van Buchem disease, type 2, 607636 (3), Autosomal dominant	Lrp5 (MGI:1278315)
chr11	68460717	68615333	11q13	11q13.2	610879	SAPS3, PP6R3, C11orf23, KIAA1558	SAPS domain family, member 3	PPP6R3	55291	ENSG00000110075			Ppp6r3 (MGI:1921807)
chr11	68684474	68691174	11q13.3-q13.5	11q13.2	137035	GAL, GALN, GLNN, ETL8	Galanin	GAL	51083	ENSG00000069482	mutation identified in 1 ETL8 family	?Epilepsy, familial temporal lobe, 8, 616461 (3), Autosomal dominant	Gal (MGI:95637)
chr11	68700000	75500000	11q13.3-q13.4		194633	ZNF126	Zinc finger protein-126 (HZF-2)						
chr11	68706673	68751563	11q13.2-q13.3	11q13.3	604374	MTL5, TESMIN	Metallothionein-like 5, testis-specific	TESMIN	9633	ENSG00000132749			Tesmin (MGI:1340029)
chr11	68754619	68844409	11q13	11q13.3	600528	CPT1A	Carnitine palmitoyltransferase I, liver	CPT1A	1374	ENSG00000110090		CPT deficiency, hepatic, type IA, 255120 (3), Autosomal recessive	Cpt1a (MGI:1098296)
chr11	68891275	68903834	11q13.2	11q13.3	611834	MRPL21	Mitochondrial ribosomal protein L21	MRPL21	219927	ENSG00000197345			Mrpl21 (MGI:2660674)
chr11	68903850	68940600	11q13.2-q13.4	11q13.3	600502	IGHMBP2, SMUBP2, CATF1, SMARD1, HMN6, CMT2S	Immunoglobulin mu binding protein 2	IGHMBP2	3508	ENSG00000132740		Charcot-Marie-Tooth disease, axonal, type 2S, 616155 (3), Autosomal recessive; Neuronopathy, distal hereditary motor, type VI, 604320 (3), Autosomal recessive	Ighmbp2 (MGI:99954)
chr11	68980020	68980985	11q13.2	11q13.3	607231	MRGPRD, MRGD	Mas-related G protein-coupled receptor family, member D	MRGPRD	116512	ENSG00000172938			Mrgprd (MGI:3033142)
chr11	69004374	69013670	11q13.2	11q13.3	607233	MRGPRF, MRGF, RTA	Mas-related G protein-coupled receptor family, member F	MRGPRF	116535	ENSG00000172935			Mrgprf (MGI:2384823)
chr11	69048875	69090603	11q13.2	11q13.3	612163	TPCN2, TPC2, SHEP10	Two-pore segment channel 2	TPCN2	219931	ENSG00000162341		[Skin/hair/eye pigmentation 10, blond/brown hair], 612267 (3)	Tpcn2 (MGI:2385297)
chr11	69294137	69297286	11q13.1	11q13.3	605625	MYEOV	Myeloma overexpressed gene	MYEOV	26579	ENSG00000172927			
chr11	69485560	69493542	11q13	11q13.3	617696	CUPID1, LINC01488, BRCAT8	CCND1 upstream intergenic DNA repair 1, noncoding	LINC01488	101928292				
chr11	69641104	69654473	11q13	11q13.3	168461	CCND1, PRAD1, BCL1	Cyclin D1	CCND1	595	ENSG00000110092	pseudogene on 11q13	{Colorectal cancer, susceptibility to}, 114500 (3), Autosomal dominant; {Multiple myeloma, susceptibility to}, 254500 (3), Somatic mutation; {von Hippel-Lindau syndrome, modifier of}, 193300 (3), Autosomal dominant	Ccnd1 (MGI:88313)
chr11	69665562	69675396	11q13	11q13.3	607224	ORAOV1, TAOS1	Oral cancer overexpressed gene 1	ORAOV1	220064	ENSG00000149716			Oraov1 (MGI:1919534)
chr11	69698237	69704337	11q13.1	11q13.3	603891	FGF19	Fibroblast growth factor 19	FGF19	9965	ENSG00000162344			Fgf15 (MGI:1096383)
chr11	69771015	69775402	11q13	11q13.3	164980	FGF4, HSTF1	Fibroblast growth factor-4 (heparin secretory transforming protein-1; Kaposi sarcoma oncogene)	FGF4	2249	ENSG00000075388	coamplified with FGF3 in melanoma		Fgf4 (MGI:95518)
chr11	69809967	69819423	11q13	11q13.3	164950	FGF3, INT2	Fibroblast growth factor-3 (oncogene INT2)	FGF3	2248	ENSG00000186895	35kb 5' to HST1	Deafness, congenital with inner ear agenesis, microtia, and microdontia, 610706 (3), Autosomal recessive	Fgf3 (MGI:95517)
chr11	70078301	70189544	11q13	11q13.3	610108	ANO1, TMEM16A, FLJ10261	Anoctamin 1, calcium activated chloride channel	ANO1	55107	ENSG00000131620			Ano1 (MGI:2142149)
chr11	70203162	70207401	11q13.3	11q13.3	602457	FADD	FAS-associating protein with death domain	FADD	8772	ENSG00000168040		Infections, recurrent, with encephalopathy, hepatic dysfunction, and cardiovascular malformations, 613759 (3), Autosomal recessive	Fadd (MGI:109324)
chr11	70270686	70384500	11q13.3	11q13.3	611054	PPFIA1, LIP1	Protein-tyrosine phosphatase, receptor-type, F polypeptide-interacting protein alpha-1	PPFIA1	8500	ENSG00000131626			Ppfia1 (MGI:1924750)
chr11	70398505	70436583	11q13	11q13.3	164765	CTTN, EMS1	Cortactin	CTTN	2017	ENSG00000085733	amplified in breast cancer and squamous cell cancer		Cttn (MGI:99695)
chr11	70467855	71252723	11q13.3-q13.4	11q13.3-q13.4	603290	SHANK2, CORTBP1, AUTS17	SH3 and multiple ankyrin repeat domains 2	SHANK2	22941	ENSG00000162105		{Autism susceptibility 17}, 613436 (3)	Shank2 (MGI:2671987)
chr11	71434410	71448430	11q12-q13	11q13.4	602858	DHCR7, SLOS	Delta-7-dehydrocholesterol reductase	DHCR7	1717	ENSG00000172893		Smith-Lemli-Opitz syndrome, 270400 (3), Autosomal recessive	Dhcr7 (MGI:1298378)
chr11	71453170	71501537	11q13.2	11q13.4	608285	NADSYN1	NAD synthetase 1	NADSYN1	55191	ENSG00000172890			Nadsyn1 (MGI:1926164)
chr11	71548419	71549606	11q13.5	11q13.4	148021	KRTAP5-9, KRN1	Keratin associated protein 5-9	KRTAP5-9	3846	ENSG00000254997			
chr11	71787510	71801233	11q13.4	11q13.4	616124	FAM86C1	Family with sequence similarity 86, member C1	FAM86C1	55199	ENSG00000158483			
chr11	71997943	72002918	11q13.4	11q13.4	604113	IL18BP	Interleukin 18-binding protein	IL18BP	10068	ENSG00000137496			Il18bp (MGI:1333800)
chr11	72002863	72080692	11q13	11q13.4	164009	NUMA1	Nuclear mitotic apparatus protein-1	NUMA1	4926	ENSG00000137497	fused with RARA in APL	Leukemia, acute promyelocytic, somatic, 612376 (3)	Numa1 (MGI:2443665)
chr11	72080330	72110781	11q13.3-q13.4	11q13.4	612414	LRTOMT, LRTOMT1, LRTOMT2, DFNB63	Leucine-rich transmembrane O-methyltransferase	LRTOMT	220074	ENSG00000284844		Deafness, autosomal recessive 63, 611451 (3), Autosomal recessive	Tomt (MGI:3769724)
chr11	72097291	72103386	11q13.4	11q13.4	613510	LAMTOR1, C11orf59, PDRO	Late endosomal/lysosomal adaptor, mitogen-activated protein kinase and mammalian target of rapamycin activator 1	LAMTOR1	55004	ENSG00000149357			Lamtor1 (MGI:1913758)
chr11	72106375	72112779	11q13.4	11q13.4	614717	ANAPC15, APC15	Anaphase-promoting complex, subunit 15	ANAPC15	25906	ENSG00000110200			
chr11	72135709	72139891	11q13.4	11q13.4	602469	FOLR3	Folate receptor 3	FOLR3	2352	ENSG00000110203			
chr11	72189557	72196322	11q13.3-q13.5	11q13.4	136430	FOLR1	Folate receptor-1, adult	FOLR1	2348	ENSG00000110195	telomeric of FGF3	Neurodegeneration due to cerebral folate transport deficiency, 613068 (3), Autosomal recessive	Folr1 (MGI:95568)
chr11	72216772	72221949	11q13.3-q13.5	11q13.4	136425	FOLR2	Folate receptor-2 (fetal)	FOLR2	2350	ENSG00000165457	23kb from FOLR1		Folr2 (MGI:95569)
chr11	72223860	72239146	11q23	11q13.4	600829	INPPL1, OPSMD	Inositol polyphosphate phosphatase-like 1	INPPL1	3636	ENSG00000165458		Opsismodysplasia, 258480 (3), Autosomal recessive	Inppl1 (MGI:1333787)
chr11	72239076	72244175	11q13.3-q13.4	11q13.4	602753	PHOX2A, ARIX, CFEOM2	Paired-like (astraless) homeobox 2a	PHOX2A	401	ENSG00000165462		Fibrosis of extraocular muscles, congenital, 2, 602078 (3), Autosomal recessive	Phox2a (MGI:106633)
chr11	72292424	72434683	11q13.4	11q13.4	616254	CLPB, SKD3, MEGCANN, MGCA7	Caseinolytic peptidase B	CLPB	81570	ENSG00000162129		3-methylglutaconic aciduria, type VII, with cataracts, neurologic involvement and neutropenia, 616271 (3), Autosomal recessive	Clpb (MGI:1100517)
chr11	72576139	72674452	11q13.4	11q13.4	602658	PDE2A	Phosphodiesterase 2A	PDE2A	5138	ENSG00000186642			Pde2a (MGI:2446107)
chr11	72615062	72615129	11q13.4	11q13.4	615017	MIR139, MIR139-3p	Micro RNA 139	MIR139	406931				
chr11	72685068	72752388	11q13.4	11q13.4	606646	ARAP1, CENTD2, KIAA0782	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1	ARAP1	116985	ENSG00000186635			Arap1 (MGI:1916960)
chr11	72754728	72793704	11q13	11q13.4	617382	STARD10	START domain-containing protein 10	STARD10	10809	ENSG00000214530			Stard10 (MGI:1860093)
chr11	72836742	73142681	11q13.4	11q13.4	617556	FCHSD2, KIAA0769, NWK	FCH and double SH3 domains protein 2	FCHSD2	9873	ENSG00000137478			Fchsd2 (MGI:2448475)
chr11	73200415	73246742	11q13.5	11q13.4	600041	P2RY2, P2Y2, P2U	Purinergic receptor P2Y, G-protein coupled, 2	P2RY2	5029	ENSG00000175591			P2ry2 (MGI:105107)
chr11	73264502	73298624	11q13.5	11q13.4	602451	P2RY6, P2Y6	Pyrimidinergic receptor P2Y, G protein-coupled, 6	P2RY6	5031	ENSG00000171631			P2ry6 (MGI:2673874)
chr11	73305960	73369379	11q13.4	11q13.4	617043	ARHGEF17, RHOGEF17, TEM4, KIAA0337	Rho guanine nucleotide exchange factor 17	ARHGEF17	9828	ENSG00000110237			Arhgef17 (MGI:2673002)
chr11	73376359	73397473	11q13.4	11q13.4	611211	RELT, TNFRSF19L	Receptor expressed in lymphoid tissues	RELT	84957	ENSG00000054967			Relt (MGI:2443373)
chr11	73400477	73598188	11q13.4	11q13.4	616316	RAM168A, TCRP1, KIAA0280	Family with sequence similarity 168, member A	FAM168A	23201	ENSG00000054965			Fam168a (MGI:2442372)
chr11	73646177	73662818	11q13-q14.1	11q13.4	607651	PLEKHB1, PHR1, KPL1	Pleckstrin homology domain-containing protein, family B, member 1	PLEKHB1	58473	ENSG00000021300			Plekhb1 (MGI:1351469)
chr11	73675637	73761155	11q13.4	11q13.4	179513	RAB6A, RAB6	Oncogene RAB6	RAB6A	5870	ENSG00000175582	previously assigned to 2q14-q21		Rab6a (MGI:894313)
chr11	73787871	73864610	11q13.2	11q13.4	611853	MRPL48	Mitochondrial ribosomal protein L48	MRPL48	51642	ENSG00000175581	pseudogene on 6		Mrpl48 (MGI:1289321)
chr11	73870257	73876900	11q13.4	11q13.4	608016	CHCHD8, E2IG2	Coiled-coil-helix-coiled-coil-helix domain containing 8	COA4	51287	ENSG00000181924			Coa4 (MGI:1915435)
chr11	73950318	73970286	11q13.3	11q13.4	610263	DNAJB13, TSARG6, CILD34	DNAJ/HSP40 homolog, subfamily B, member 13	DNAJB13	374407	ENSG00000187726		Ciliary dyskinesia, primary, 34, 617091 (3), Autosomal recessive	Dnajb13 (MGI:1916637)
chr11	73974670	73982871	11q13	11q13.4	601693	UCP2, BMIQ4	Uncoupling protein-2	UCP2	7351	ENSG00000175567		{Obesity, susceptibility to, BMIQ4}, 607447 (3)	Ucp2 (MGI:109354)
chr11	74000280	74009236	11q13	11q13.4	602044	UCP3	Uncoupling protein-3	UCP3	7352	ENSG00000175564		{Obesity, severe, and type II diabetes}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Ucp3 (MGI:1099787)
chr11	74012577	74171209	11q13.4	11q13.4	615944	C2CD3, OFD14	C2 calcium-dependent domain-containing protein 3	C2CD3	26005	ENSG00000168014	mutation identified in 1 OFD14 patient and 1 OFD14 fetus	?Orofaciodigital syndrome XIV, 615948 (3), Autosomal recessive	C2cd3 (MGI:2142166)
chr11	74171062	74254702	11q13.4	11q13.4	611117	PPME1	Protein phosphatase methylesterase 1	PPME1	51400	ENSG00000214517			Ppme1 (MGI:1919840)
chr11	74259922	74311675	11q12	11q13.4	608987	P4HA3	Procollagen-proline, 2-oxoglutarate-4-dioxygenase, alpha subunit, isoform 3	P4HA3	283208	ENSG00000149380			P4ha3 (MGI:2444049)
chr11	74330311	74398750	11q13.4	11q13.4	611610	PGM2L1	Phosphoglucomutase 2-like 1	PGM2L1	283209	ENSG00000165434			Pgm2l1 (MGI:1918224)
chr11	74454840	74467728	11q13-q14	11q13.4	604433	KCNE3, HOKPP, HYPP	Potassium voltage-gated channel, ISK-related subfamily, member 3	KCNE3	10008	ENSG00000175538		Brugada syndrome 6, 613119 (3)	Kcne3 (MGI:1891124)
chr11	74490510	74493712	11q13.4	11q13.4	617659	LIPT2	Lipoyl(octanoyl) transferase 2	LIPT2	387787	ENSG00000175536		Encephalopathy, neonatal severe, with lactic acidosis and brain abnormalities, 617668 (3), Autosomal recessive	Lipt2 (MGI:1914414)
chr11	74696427	74731384	11q13.4	11q13.4	613127	CHRDL2, CHL2, BNF1	Chordin-like 2	CHRDL2	25884	ENSG00000054938			Chrdl2 (MGI:1916371)
chr11	74840909	74949186	11q13.3	11q13.4	609788	XRRA1	X-ray radiation resistance-associated 1	XRRA1	143570	ENSG00000166435			Xrra1 (MGI:2181647)
chr11	74988904	75007697	11q13.5	11q13.4	604617	NEU3, SIAL3	Neuraminidase 3 (membrane sialidase; sialidase 3)	NEU3	10825	ENSG00000162139			Neu3 (MGI:1355305)
chr11	75150986	75206399	Chr.11	11q13.4	604988	SLC21A9, OATPB	Solute carrier family 21 (organic anion transporter), member 9	SLCO2B1	11309	ENSG00000137491			Slco2b1 (MGI:1351872)
chr11	75260121	75351830	11q13	11q13.4	107940	ARRB1	Arrestin, beta 1	ARRB1	408	ENSG00000137486			Arrb1 (MGI:99473)
chr11	75335091	75335185	11q13	11q13.4	613755	MIR326, MIRN326	Micro RNA 326	MIR326	442900				
chr11	75399490	75422301	11q13.3-q13.5	11q13.4	600454	RPS3	Ribosomal protein S3	RPS3	6188	ENSG00000149273			Rps3 (MGI:1350917)
chr11	75400390	75400537	11q13.3-q13.5	11q13.4	600455	RNU15A	RNA, U15a small nucleolar	SNORD15A	6079		processed from intron of RPS3		
chr11	75434639	75525915	11q13.4-q13.5	11q13.4-q13.5	609632	GDPD5, GDE2, PP1665	Glycerophosphodiester phosphodiesterase domain-containing protein 3	GDPD5	81544	ENSG00000158555			Gdpd5 (MGI:2686926)
chr11	75500000	77400000	11q13.5		613064	ATOD7	Dermatitis, atopic, 7		100310755		associated with rs7927894	{Dermatitis, atopic, susceptibility to, 7}, 613064 (2)	
chr11	75562055	75572803	11q13.5	11q13.5	600943	SERPINH1, SERPINH2, PPROM, CBP2, CBP1, OI10	Serpin peptidase inhibitor, clade H, member 1	SERPINH1	871	ENSG00000149257		Osteogenesis imperfecta, type X, 613848 (3), Autosomal recessive; {Preterm premature rupture of the membranes, susceptibility to}, 610504 (3)	Serpinh1 (MGI:88283)
chr11	75586913	75668723	11q13.5	11q13.5	601783	MAP6, MTAP6, STOP, KIAA1878	Microtubule-associated protein 6	MAP6	4135	ENSG00000171533			Map6 (MGI:1201690)
chr11	75717818	75732957	11q13.5	11q13.5	610270	MOGAT2, MGAT2	Monoacylglycerol O-acyltransferase 2	MOGAT2	80168	ENSG00000166391			Mogat2 (MGI:2663253)
chr11	75768732	75801535	11q13.5	11q13.5	606983	DGAT2	Diacylglycerol O-acyltransferase 2	DGAT2	84649	ENSG00000062282			Dgat2 (MGI:1915050)
chr11	75815166	76144237	11q13	11q13.5	602493	UVRAG	UV radiation resistance-associated gene	UVRAG	7405	ENSG00000198382			Uvrag (MGI:1925860)
chr11	76186325	76210841	11q13.5	11q13.5	603699	WNT11	Wingless-type MMTV integration site family, member 11	WNT11	7481	ENSG00000085741			Wnt11 (MGI:101948)
chr11	76349955	76380964	11q13.5	11q13.5	607374	PRKRIR	PRKR inhibitor, repressor of	THAP12	5612	ENSG00000137492			Thap12 (MGI:1920231)
chr11	76444927	76553030	11q13.4-q13.5	11q13.5	608574	EMSY, C11orf30	EMSY gene	EMSY	56946	ENSG00000158636	100kb from GARP		Emsy (MGI:1924203)
chr11	76657440	76670940	11q13.5	11q13.5	137207	LRRC32, GARP, D11S833E	Leucine rich repeat containing 32	LRRC32	2615	ENSG00000137507			Lrrc32 (MGI:93882)
chr11	76782312	76798153	11q13.5	11q13.5	608015	TSKU, E2IG4, TSK	Tsukushin	TSKU	25987	ENSG00000182704			Tsku (MGI:2443855)
chr11	76860872	77026796	11q13.5	11q13.5	617036	ACER3, APHC, PHCA, PLDECO	Alkaline ceramidase 3	ACER3	55331	ENSG00000078124	mutation identified in 1 PLDECO family	?Leukodystrophy, progressive, early childhood-onset, 617762 (3), Autosomal recessive	Acer3 (MGI:1913440)
chr11	77034340	77041972	11q14	11q13.5	615315	B3GNT6	Beta-1,3-N-acetylglucosaminyltransferase 6	B3GNT6	192134	ENSG00000198488			B3gnt6 (MGI:3039603)
chr11	77066944	77126154	11q14	11q13.5	602537	CAPN5, HTRA3, VRNI	Calpain 5	CAPN5	726	ENSG00000149260		Vitreoretinopathy, neovascular inflammatory, 193235 (3), Autosomal dominant	Capn5 (MGI:1100859)
chr11	77102839	77103330	11q13.4-q14.1	11q13.5	164340	OMP	Olfactory marker protein	OMP	4975	ENSG00000254550			Omp (MGI:97436)
chr11	77128191	77215240	11q13.5	11q13.5	276903	MYO7A, USH1B, DFNB2, DFNA11	Myosin VIIA	MYO7A	4647	ENSG00000137474		Deafness, autosomal dominant 11, 601317 (3), Autosomal dominant; Deafness, autosomal recessive 2, 600060 (3), Autosomal recessive; Usher syndrome, type 1B, 276900 (3), Autosomal recessive	Myo7a (MGI:104510)
chr11	77322014	77514956	11q13-q14	11q13.5-q14.1	602590	PAK1	p21/CDC42/RAC1-activated kinase 1	PAK1	5058	ENSG00000149269			Pak1 (MGI:1339975)
chr11	77400000	93000000	11q14		610888	GCRG224	Gastric cancer-related gene 224		360219				
chr11	77400000	110600000	11q14-q22		612017	IHPS3	Pyloric stenosis, infantile hypertrophic, 3		100188876		max lod at rs541821	Pyloric stenosis, infantile hypertrophic, 3, 612017 (2)	
chr11	77400000	97400000	11q14-q21		603342	SCZD2	Schizophrenia susceptibility locus, chromosome 11-related	SCZD2	6378			{?Schizophrenia}, 181500 (2), Autosomal dominant	
chr11	77400000	93000000	11q14		607279	SLEH1	Systemic lupus erythematosus with hemolytic anemia, susceptibility to, 1	SLEH1	170682			{Systemic lupus erythematosus with hemolytic anemia}, 607279 (2)	
chr11	77589629	77610355	11q14	11q14.1	609914	AQP11, AQPX1	Aquaporin 11	AQP11	282679	ENSG00000178301			Aqp11 (MGI:1913583)
chr11	77616150	77637805	11q13.5-q14.1	11q14.1	602158	CLNS1A, CLNS1B	Chloride channel, nucleotide-sensitive, 1A	CLNS1A	1207	ENSG00000074201	CLNS1B on 6p12.1-q13 = pseudogene?		Clns1a (MGI:109638)
chr11	77660008	77872231	11q13	11q14.1	608522	HBXAP, RSF1	Hepatitis B virus X-associated protein	RSF1	51773	ENSG00000048649			Rsf1 (MGI:2682305)
chr11	77874417	77994670	11q14.1	11q14.1	611348	INTS4, INT4	Integrator complex subunit 4	INTS4	92105	ENSG00000149262			Ints4 (MGI:1917164)
chr11	78063860	78068356	11q13.5	11q14.1	601926	THRSP	Thyroid hormone responsive SPOT14, rat, homolog of	THRSP	7069	ENSG00000151365			Thrsp (MGI:109126)
chr11	78068346	78080218	11q14.1	11q14.1	603845	NDUFC2	NADH-ubiquinone oxidoreductase 1, subunit C2	NDUFC2	4718	ENSG00000151366			Ndufc2 (MGI:1344370)
chr11	78100941	78139652	11pter-p15.5	11q14.1	608103	ALG8, CDG1H, PCLD3	Alg8, S. cerevisiae, homolog of	ALG8	79053	ENSG00000159063		Congenital disorder of glycosylation, type Ih, 608104 (3), Autosomal recessive; Polycystic liver disease 3 with or without kidney cysts, 617874 (3)	Alg8 (MGI:2141959)
chr11	78215289	78417821	11q13.4-q13.5	11q14.1	606203	GAB2	GRB2-associated binding protein 2	GAB2	9846	ENSG00000033327			Gab2 (MGI:1333854)
chr11	78435960	78574863	11q14.1	11q14.1	612803	NARS2, COXPD24	Asparaginyl-tRNA synthetase 2	NARS2	79731	ENSG00000137513		Combined oxidative phosphorylation deficiency 24, 616239 (3), Autosomal recessive	Nars2 (MGI:2142075)
chr11	78653282	79441018	11q14.1	11q14.1	610084	TENM4, ODZ4, TNM4, DOC4, KIAA1302, ETM5	Teneurin transmembrane protein 4	TENM4	26011	ENSG00000149256		Essential tremor, hereditary, 5, 616736 (3), Autosomal dominant	Tenm4 (MGI:2447063)
chr11	82822939	82901739	11q14	11q14.1	176785	PRCP, PCP	Prolylcarboxypeptidase (angiotensinase C)	PRCP	5547	ENSG00000137509			Prcp (MGI:1919711)
chr11	82973132	83071922	11q12-q14	11q14.1	605693	RAB30	Ras-associated protein RAB30	RAB30	27314	ENSG00000137502			Rab30 (MGI:1923235)
chr11	83157094	83185793	11q14.1	11q14.1	608876	PCF11, KIAA0824	PCF11, yeast, homolog of	PCF11	51585	ENSG00000165494			Pcf11 (MGI:1919579)
chr11	83455008	85628534	11q21	11q14.1	603583	DLG2	Discs large, Drosophila, homolog of, 2 (channel-associated protein of synapses, 110kD)	DLG2	1740	ENSG00000150672			Dlg2 (MGI:1344351)
chr11	85628572	85636539	11q14.1	11q14.1	615533	TMEM126B	Transmembrane protein 126B	TMEM126B	55863	ENSG00000171204		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Tmem126b (MGI:1915722)
chr11	85647918	85656552	11q14.1-q21	11q14.1	612988	TMEM126A, OPA7	Transmembrane protein 126A	TMEM126A	84233	ENSG00000171202		Optic atrophy 7, 612989 (3), Autosomal recessive	Tmem126a (MGI:1913521)
chr11	85694220	85811181	11q14	11q14.1	612880	SYTL2, SLP2, SLP2A, EXO4, KIAA1597	Synaptotagmin-like 2	SYTL2	54843	ENSG00000137501			Sytl2 (MGI:1933366)
chr11	85957170	86069880	11q14	11q14.2	603025	PICALM, CALM, CLTH, LAP	Phosphatidylinositol-binding clathrin assembly protein	PICALM	8301	ENSG00000073921	fuses with AF10 in t(10;11)	Leukemia, acute myeloid, somatic, 601626 (3)	Picalm (MGI:2385902)
chr11	86244383	86285419	11q14.2-q22.3	11q14.2	605984	EED, WAIT1, COGIS	Embryonic ectoderm development protein, mouse, homolog of	EED	8726	ENSG00000074266		Cohen-Gibson syndrome, 617561 (3), Autosomal dominant	Eed (MGI:95286)
chr11	86302210	86345942	11q14.2	11q14.2	614908	HIKESHI, C11orf73, HLD13	Hikeshi	HIKESHI	51501	ENSG00000149196		Leukodystrophy, hypomyelinating, 13, 616881 (3), Autosomal recessive	Hikeshi (MGI:96738)
chr11	86441107	86674745	11cen-q22.3	11q14.2	604626	ME3	Malic enzyme 3	ME3	10873	ENSG00000151376			Me3 (MGI:1916679)
chr11	86945674	86955397	11q14-q21	11q14.2	604579	FZD4, EVR1	Frizzled, Drosophila, homolog of, 4	FZD4	8322	ENSG00000174804		Exudative vitreoretinopathy 1, 133780 (3), Autosomal dominant; Retinopathy of prematurity, 133780 (3), Autosomal dominant	Fzd4 (MGI:108520)
chr11	87037843	87328833	11q14.2	11q14.2	616360	TMEM135, PMP52	Transmembrane protein 135	TMEM135	65084	ENSG00000166575			Tmem135 (MGI:1920009)
chr11	87809489	88175503	11q13.5-q22.3	11q14.2	606281	RAB38	Ras-family, member RAB38	RAB38	23682	ENSG00000123892			Rab38 (MGI:1919683)
chr11	88293591	88337786	11q14.1-q14.3	11q14.2	602365	CTSC, CPPI, PALS, PLS, HMS, PDON1, JPD	Cathepsin C	CTSC	1075	ENSG00000109861		Haim-Munk syndrome, 245010 (3), Autosomal recessive; Papillon-Lefevre syndrome, 245000 (3), Autosomal recessive; Periodontitis 1, juvenile, 170650 (3), Autosomal recessive	Ctsc (MGI:109553)
chr11	88504575	89065962	11q14.2-q14.3	11q14.2-q14.3	604102	GRM5, MGLUR5	Glutamate receptor, metabotropic, 5	GRM5	2915	ENSG00000168959			Grm5 (MGI:1351342)
chr11	89177564	89295758	11q14-q21	11q14.3	606933	TYR, SHEP3, CMM8, OCA1A, ATN	Tyrosinase	TYR	7299	ENSG00000077498		Albinism, oculocutaneous, type IA, 203100 (3), Autosomal recessive; Albinism, oculocutaneous, type IB, 606952 (3); {Melanoma, cutaneous malignant, susceptibility to, 8}, 601800 (3); [Skin/hair/eye pigmentation 3, blue/green eyes], 601800 (3); [Skin/hair/eye pigmentation 3, light/dark/freckling skin], 601800 (3); Waardenburg syndrome/albinism, digenic, 103470 (3), Autosomal dominant	Tyr (MGI:98880)
chr11	89324352	89589610	11q14.2-q21	11q14.3	605261	NOX4, RENOX	NADPH oxidase 4	NOX4	50507	ENSG00000086991			Nox4 (MGI:1354184)
chr11	89637579	89698717	11p13-p11.1	11q14.3	609020	FOLH1B, PSMAL, GCP3	Folate hydrolase 1B	FOLH1B	219595				
chr11	89766435	89808574	11p11.12-q12	11q14.3	606124	RNF18	RING finger protein-18	TRIM49	57093	ENSG00000168930			
chr11	90085949	90087130	11q14.3	11q14.3	613696	UBTFL1, HMGPI	Upstream binding transcription factor (RNA polymerase I)-like 1	UBTFL1	642623	ENSG00000255009			
chr11	90131692	90193576	11q14.3-q21	11q14.3	611636	NAALAD2	N-acetylated alpha-linked acidic dipeptidase 2	NAALAD2	10003	ENSG00000077616			Naalad2 (MGI:1919810)
chr11	92224635	92896472	11q14.3-q21	11q14.3	612483	FAT3	FAT tumor suppressor, Drosophila, homolog of, 3	FAT3	120114	ENSG00000165323			Fat3 (MGI:2444314)
chr11	92969622	92986240	11q21-q22	11q14.3	600804	MTNR1B	Melatonin receptor 1B	MTNR1B	4544	ENSG00000134640		{Diabetes mellitus, type 2, susceptibility to}, 125853 (3), Autosomal dominant	Mtnr1b (MGI:2181726)
chr11	93000000	110600000	11q21-q22		613233	FGQTL3	Fasting plasma glucose level QTL 3		100379217		associated with rs10830963	[Fasting plasma glucose level QTL 3], 613233 (2)	
chr11	93144170	93386037	11q14.3	11q21	613760	SLC36A4, PAT4	Solute carrier family 36, member 4	SLC36A4	120103	ENSG00000180773			Slc36a4 (MGI:2442595)
chr11	93329078	93438469	11q21	11q21	617148	DEUP1, CCDC67	Deuterosome assembly protein 1	DEUP1	159989	ENSG00000165325			Deup1 (MGI:2443026)
chr11	93478471	93553978	11q21	11q21	609477	C11orf75, FN5	FN5, pufferfish, homolog of	SMCO4	56935	ENSG00000166002			
chr11	93661649	93730380	11q21	11q21	617728	CEP295, KIAA1731	Centrosomal protein, 295kD	CEP295	85459	ENSG00000166004			Cep295 (MGI:2442521)
chr11	93730193	93741536	11q21	11q21	612823	TAF1D, RAFI41, JOSD3	TATA box-binding protein-associated factor 1D	TAF1D	79101	ENSG00000166012			Taf1d (MGI:1922566)
chr11	93741593	93763101	11q21	11q21	615810	C11orf54, PTOD012	Chromosome 11 open reading frame 54	C11orf54	28970	ENSG00000182919			4931406C07Rik (MGI:1918234)
chr11	93784238	93813329	11q21	11q21	603810	MED17, CRSP6, CRSP77, TRAP80, DRIP80	Mediator complex subunit 17	MED17	9440	ENSG00000042429		Microcephaly, postnatal progressive, with seizures and brain atrophy, 613668 (3), Autosomal recessive	Med17 (MGI:2182585)
chr11	94128927	94185595	11q21	11q21	608420	PANX1, PX1	Pannexin 1	PANX1	24145	ENSG00000110218			Panx1 (MGI:1860055)
chr11	94305636	94307691	11q21	11q21	615737	FOLR4	Folate receptor 4	IZUMO1R	390243	ENSG00000183560			Izumo1r (MGI:1929185)
chr11	94377310	94401422	11q21	11q21	605569	GPR83, GIR, GPR72	G protein-coupled receptor 83	GPR83	10888	ENSG00000123901			Gpr83 (MGI:95712)
chr11	94415569	94512700	11q21	11q21	600814	MRE11A, MRE11, ATLD	Meiotic recombination 11, S. cerevisiae, homolog A of	MRE11	4361	ENSG00000020922		Ataxia-telangiectasia-like disorder 1, 604391 (3), Autosomal recessive	Mre11a (MGI:1100512)
chr11	94543850	94549897	11q21	11q21	104230	FUT4, FCT3A, CD15	Fucosyltransferase 4 (alpha (1,3) fucosyltransferase, myeloid-specific)	FUT4	2526	ENSG00000196371			Fut4 (MGI:95594)
chr11	94567307	94621420	11q12	11q21	610315	PIWIL4, HIWI2, MIWI2	PIWI-like 4	PIWIL4	143689	ENSG00000134627			Piwil4 (MGI:3041167)
chr11	94706417	94876752	11q21	11q21	614657	AMOTL1, JEAP	Angiomotin-like 1	AMOTL1	154810	ENSG00000166025			Amotl1 (MGI:1922973)
chr11	94973680	94999513	11q21	11q21	609766	JMJD2D	Jumonji domain-containing protein 2D	KDM4D	55693	ENSG00000186280			Kdm4d (MGI:3606484)
chr11	95025257	95027595	11q21	11q21	616581	KDM4E, JMJD2E	Lysine-specific demethylase 4E	KDM4E	390245	ENSG00000235268			
chr11	95066876	95071226	11q22	11q21	603269	SRSF8, SFRS2B, SRp46	Splicing factor, arginine/serine-rich, 8	SRSF8	10929	ENSG00000263465			
chr11	95165512	95232540	11q21	11q21	607768	SEST3	Sestrin 3	SESN3	143686	ENSG00000149212			Sesn3 (MGI:1922997)
chr11	95790460	95832692	11q21	11q21	607951	CEP57, PIG8, TSP57, KIAA0092, MVA2	Centrosomal protein 57kD	CEP57	9702	ENSG00000166037		Mosaic variegated aneuploidy syndrome 2, 614114 (3), Autosomal recessive	Cep57 (MGI:1915551)
chr11	95832879	95924206	11q22	11q21	603557	MTMR2, CMT4B1	Myotubularin-related protein 2	MTMR2	8898	ENSG00000087053		Charcot-Marie-Tooth disease, type 4B1, 601382 (3), Autosomal recessive	Mtmr2 (MGI:1924366)
chr11	95976592	96343307	11q21	11q21	607537	MAML2, MAM3	Mastermind-like 2	MAML2	84441	ENSG00000184384	t(11;19)	Mucoepidermoid salivary gland carcinoma (3)	
chr11	96341437	96341525	11q21	11q21	615372	MIR1260B	Micro RNA 1260B	MIR1260B	100422991				
chr11	96389993	96393562	11q21	11q21	603211	JRKL, HHMJG	Jerky, mouse, homolog-like	JRKL	8690	ENSG00000183340			Jrkl (MGI:1924782)
chr11	97400000	135086622	11q22-qter		105580	ANC	Anal canal carcinoma		8066		3p22 also deleted	?Anal canal carcinoma, 105580 (2), Autosomal dominant	
chr11	99020903	100358884	11q21-q22.2	11q22.1	607219	CNTN5, NB2	Contactin 5	CNTN5	53942	ENSG00000149972			Cntn5 (MGI:3042287)
chr11	100687239	100993944	11q22.1	11q22.1	615936	ARHGAP42, GRAF3	Rho GTPase-activating protein 42	ARHGAP42	143872	ENSG00000165895			Arhgap42 (MGI:1918794)
chr11	101029623	101130680	11q22	11q22.1	607311	PGR	Progesterone receptor	PGR	5241	ENSG00000082175	11q13 = earlier regionalization	?Progesterone resistance, 264080 (2), Autosomal recessive	Pgr (MGI:97567)
chr11	101451469	101583927	11q21-q22	11q22.1	603652	TRPC6, TRP6, FSGS2	Transient receptor potential channel-6	TRPC6	7225	ENSG00000137672		Glomerulosclerosis, focal segmental, 2, 603965 (3)	Trpc6 (MGI:109523)
chr11	101890673	101917049	11q22	11q22.1	607666	ANGPTL5	Angiopoietin-like 5	ANGPTL5	253935	ENSG00000187151			
chr11	101915014	102001064	11q22.1	11q22.1	614634	KIAA1377	KIAA1377 gene	CEP126	57562	ENSG00000110318			Cep126 (MGI:2680221)
chr11	102109956	102233422	11q13	11q22.1	606608	YAP1, COB1	Yes-associated protein 1, 65kD	YAP1	10413	ENSG00000137693		Coloboma, ocular, with or without hearing impairment, cleft lip/palate, and/or mental retardation, 120433 (3), Autosomal dominant	Yap1 (MGI:103262)
chr11	102317372	102339402	11q22-q23	11q22.2	601721	API2, HAIP1	Apoptosis inhibitor-2	BIRC3	330	ENSG00000023445	fused with MALT1 in MALT lymphoma		Birc3 (MGI:1197007)
chr11	102347181	102378669	11q22-q23	11q22.2	601712	API1, HIAP2	Apoptosis inhibitor-1	BIRC2	329	ENSG00000110330			Birc2 (MGI:1197009)
chr11	102396324	102453043	11q22.1	11q22.2	606356	TMEM123, PORIMIN	Transmembrane protein 123	TMEM123	114908	ENSG00000152558			Tmem123 (MGI:1919179)
chr11	102520507	102530752	11q21-q22	11q22.2	178990	MMP7	Matrix metalloproteinase 7 (matrilysin, uterine)	MMP7	4316	ENSG00000137673			Mmp7 (MGI:103189)
chr11	102576834	102625331	11q22.3-q23	11q22.2	604629	MMP20, AI2A2	Matrix metalloproteinase-20 (enamelysin)	MMP20	9313	ENSG00000137674		Amelogenesis imperfecta, type IIA2, 612529 (3), Autosomal recessive	Mmp20 (MGI:1353466)
chr11	102711794	102724966	11q21-q22	11q22.2	120355	MMP8, CLG1	Matrix metalloproteinase 8 (neutrophil collagenase)	MMP8	4317	ENSG00000118113			Mmp8 (MGI:1202395)
chr11	102770501	102780627	11q22.3-q23	11q22.2	185260	MMP10, STMY2	Matrix metalloproteinase 10 (stromelysin 2)	MMP10	4319	ENSG00000166670			Mmp10 (MGI:97007)
chr11	102789909	102798234	11q22-q23	11q22.2	120353	MMP1, CLG	Matrix metalloproteinase 1 (interstitial collagenase)	MMP1	4312	ENSG00000196611		COPD, rate of decline of lung function in, 606963 (3); {Epidermolysis bullosa dystrophica, autosomal recessive, modifier of}, 226600 (3), Autosomal recessive	Mmp1a (MGI:1933846)
chr11	102835796	102843688	11q23	11q22.2	185250	MMP3, STMY1, CHDS6	Matrix metalloproteinase 3 (stromelysin 1, progelatinase)	MMP3	4314	ENSG00000149968		{Coronary heart disease, susceptibility to, 6}, 614466 (3)	Mmp3 (MGI:97010)
chr11	102862728	102875033	11q22.2-q22.3	11q22.2	601046	MMP12	Matrix metalloproteinase 12 (macrophage elastase)	MMP12	4321	ENSG00000262406			Mmp12 (MGI:97005)
chr11	102942991	102955733	11q22.3	11q22.2	600108	MMP13, CLG3, MANDP1, MDST	Matrix metalloproteinase 13 (collagenase 3)	MMP13	4322	ENSG00000137745		Metaphyseal anadysplasia 1, 602111 (3), Autosomal dominant; Metaphyseal dysplasia, Spahr type, 250400 (3), Autosomal recessive; Spondyloepimetaphyseal dysplasia, Missouri type, 602111 (3), Autosomal dominant	Mmp13 (MGI:1340026)
chr11	103050683	103092214	11q22.3	11q22.3	616522	DCUN1D5, SCCRO5	DCN1 domain-containing protein 5	DCUN1D5	84259	ENSG00000137692			Dcun1d5 (MGI:1924113)
chr11	103109430	103479862	11q22.3	11q22.3	603297	DYNC2H1, DNCH2, DHC2, ATD3, SRPS2B, SRTD3	Dynein, cytoplasmic-2, heavy chain-1	DYNC2H1	79659	ENSG00000187240	1 patient showed heterozygous NEK2 and DYNC2H1 mutations	Short-rib thoracic dysplasia 3 with or without polydactyly, 613091 (3), Autosomal recessive, Digenic recessive	Dync2h1 (MGI:107736)
chr11	103907185	104164298	11q22.3	11q22.3	609673	PDGFD, SCDGFB, IEGF	Platelet-derived growth factor D	PDGFD	80310	ENSG00000170962			Pdgfd (MGI:1919035)
chr11	104885717	104898669	11q22.3	11q22.3	608633	CASP12, CASP12P1	Caspase 12, apoptosis-related cysteine protease	CASP12	100506742	ENSG00000204403		{Sepsis, susceptibility to} (3)	
chr11	104942865	104968597	11q22.2-q22.3	11q22.3	602664	CASP4	Caspase 4, apoptosis-related cysteine protease	CASP4	837	ENSG00000196954			Casp4 (MGI:107700)
chr11	104994234	105023901	11q22.2-q22.3	11q22.3	602665	CASP5	Caspase 5, apoptosis-related cysteine protease	CASP5	838	ENSG00000137757			
chr11	105025507	105035590	11q22.2-q22.3	11q22.3	147678	CASP1, IL1BC	Caspase 1, apoptosis-related cysteine protease (interleukin-1, beta convertase)	CASP1	834	ENSG00000137752			Casp1 (MGI:96544)
chr11	105040217	105045415	11q22	11q22.3	615680	CARD16, COP1	Caspase recruitment domain-containing protein 16	CARD16	114769	ENSG00000204397			
chr11	105080452	105101491	11q22	11q22.3	609490	INCA	Inhibitory caspase recruitment domain protein	CARD17	440068	ENSG00000255221			
chr11	105137720	105139733	11q22.3	11q22.3	605354	CARD18, ICEBERG	Caspase recruitment domain-containing protein 18	CARD18	59082	ENSG00000255501			
chr11	105609539	105982091	11q22-q23	11q22.3	138246	GRIA4, GLUR4, NEDSGA	Glutamate receptor, ionotropic, AMPA 4	GRIA4	2893	ENSG00000152578		Neurodevelopmental disorder with or without seizures and gait abnormalities, 617864 (3), Autosomal dominant	Gria4 (MGI:95811)
chr11	106077564	106098691	11q22.3	11q22.3	607756	AASDHPPT	Alpha-aminoadipate semialdehyde dehydrogenase-phosphopantetheinyl transferase	AASDHPPT	60496	ENSG00000149313			Aasdhppt (MGI:1914868)
chr11	106674011	107018444	11q21-q22	11q22.3	601244	GUCY1A2, GUC1A2	Guanylate cyclase 1, soluble, alpha 2	GUCY1A2	2977	ENSG00000152402			Gucy1a2 (MGI:2660877)
chr11	107502725	107565739	11q22.3	11q22.3	613306	ALKBH8, ABH8	AlkB, E. coli, homolog of, 8	ALKBH8	91801	ENSG00000137760			Alkbh8 (MGI:1914917)
chr11	107591008	107666778	11q22.3	11q22.3	615456	ELMOD1	ELMO/CED12 domain-containing protein 1	ELMOD1	55531	ENSG00000110675			Elmod1 (MGI:3583900)
chr11	107707374	107712060	11q22-q23	11q22.3	602203	SLN	Sarcolipin	SLN	6588	ENSG00000170290			
chr11	108008732	108107775	11q22-q23	11q22.3	601741	CUL5, VACM1	Cullin-5 (vasopressin-activated calcium-mobilizing receptor-1)	CUL5	8065	ENSG00000166266			Cul5 (MGI:1922967)
chr11	108116704	108148821	11q22.3-q23.1	11q22.3	607809	ACAT1	Acetyl-Coenzyme A acetyltransferase-1 (acetoacetyl Coenzyme A thiolase)	ACAT1	38	ENSG00000075239	cluster: cen-STMY2-CLG-STMY1-ter	Alpha-methylacetoacetic aciduria, 203750 (3), Autosomal recessive	Acat1 (MGI:87870)
chr11	108155279	108222637	11q22.3	11q22.3	601448	NPAT, E14	Nuclear protein, ataxia-telangiectasia locus	NPAT	4863	ENSG00000149308			Npat (MGI:107605)
chr11	108222483	108369098	11q22.3	11q22.3	607585	ATM, ATA, AT1	Ataxia-telangiectasia mutated (includes complementation groups A, C, D, and E)	ATM	472	ENSG00000149311		Ataxia-telangiectasia, 208900 (3), Autosomal recessive; {Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant; Lymphoma, B-cell non-Hodgkin, somatic (3); Lymphoma, mantle cell, somatic (3); T-cell prolymphocytic leukemia, somatic (3)	Atm (MGI:107202)
chr11	108505430	108607513	11q22.3	11q22.3	612878	EXPH5, SLAC2B, KIAA0624	Exophilin 5	EXPH5	23086	ENSG00000110723		Epidermolysis bullosa, nonspecific, autosomal recessive, 615028 (3), Autosomal recessive	Exph5 (MGI:2443248)
chr11	108665024	108940929	11q22-q23	11q22.3	601235	DDX10	DEAD/H box-10 (RNA helicase)	DDX10	1662	ENSG00000178105	400kb telomeric to ATM; pseudogene on 9q21-q22; fused with NUP98 in AML		Ddx10 (MGI:1924841)
chr11	110092424	110171840	11q22.3	11q22.3	615001	ZC3H12C, MCPIP3	Zinc finger CCCH domain-containing protein 12C	ZC3H12C	85463	ENSG00000149289			Zc3h12c (MGI:3026959)
chr11	110174879	110296711	11q23	11q22.3	179410	RDX, DFNB24	Radixin	RDX	5962	ENSG00000137710		Deafness, autosomal recessive 24, 611022 (3), Autosomal recessive	Rdx (MGI:97887)
chr11	110429936	110464883	11q22	11q22.3	103260	FDX1, ADX	Ferredoxin-1 (adrenodoxin)	FDX1	2230	ENSG00000137714	pseudogene on 20q11-q12		Fdx1 (MGI:103224)
chr11	110600000	130900000	11q23-q24		612629	ADIPQTL4	Adiponectin, serum level of, quantitative trait locus locus 4		100271698		between D11S925 and D11S968	{Adiponectin, serum level of, QTL4}, 612629 (2)	
chr11	110600000	121300000	11q23		609354	BMND5	Bone mineral density QTL 5		554315		between D11S901 and D11S925	[Bone mineral density QTL 5], 609354 (2)	
chr11	110600000	121300000	11q23		612232	CRCS7	Colorectal cancer, susceptibility to, 7		100187711		associated with rs3802842	{Colorectal cancer, susceptibility to, 7}, 612232 (2)	
chr11	110600000	112700000	11q23.1		132860	EBVM1	Epstein-Barr virus modification site-1						
chr11	110600000	121300000	11q23		137580	GTS	Gilles de la Tourette syndrome				several loci suspected (e.g., 17q25)	Tourette syndrome, 137580 (2), Autosomal dominant	
chr11	110600000	121300000	11q23		147791	JBS	Jacobsen syndrome				contiguous gene deletion syndrome	Jacobsen syndrome, 147791 (4), Isolated cases	
chr11	110600000	121300000	11q23		613387	NAFLD2	Fatty liver disease, nonalcoholic, susceptibility to, 2		100462725		associated with rs2854116, rs2854117	{Fatty liver disease, nonalcoholic, susceptibility to, 2}, 613387 (2), Multifactorial	
chr11	110600000	121300000	11q23		188025	TCPT	Thrombocytopenia, Paris-Trousseau type (deletion 11q23 syndrome)				contiguous gene deletion of 11q23	?Thrombocytopenia, Paris-Trousseau type, 188025 (4), Isolated cases	
chr11	110600000	121300000	11q23		603040	TSG11	Tumor suppressor gene on chromosome 11		50970			{Nonsmall cell lung cancer}, 603040 (2)	
chr11	110600000	114600000	11q23.1-q23.2		194632	ZNF125	Zinc finger protein-125 (HZF-3)						
chr11	111293388	111305047	11q23	11q23.1	615693	COLCA1	Colorectal cancer-associated gene 1	COLCA1	399948				
chr11	111298348	111308734	11q23	11q23.1	615694	COLCA2	Colorectal cancer-associated gene 2	COLCA2	120376	ENSG00000214290	opposite strand from COLCA1		Colca2 (MGI:2685530)
chr11	111352250	111379670	11q23.1	11q23.1	601206	POU2AF1, OBF1	POU domain, class 2, associating factor 1	POU2AF1	5450	ENSG00000110777			Pou2af1 (MGI:105086)
chr11	111383827	111514733	11q23	11q23.1	605673	BTG4, PC3B	B-cell translocation gene 4	BTG4	54766	ENSG00000137707			Btg4 (MGI:1860140)
chr11	111512937	111513020	11q23.1	11q23.1	611374	MIR34B	Micro RNA 34B	MIR34B	407041				
chr11	111513438	111513514	11q23.1	11q23.1	611375	MIR34C	Micro RNA 34C	MIR34C	407042				
chr11	111602390	111726916	11q23.1	11q23.1	608973	SIK2, KIAA0781	Salt-inducible kinase 2	SIK2	23235	ENSG00000170145			Sik2 (MGI:2445031)
chr11	111690272	111766444	11q22-q24	11q23.1	603113	PPP2R1B	Protein phosphatase 2, structural/regulatory subunit A, beta	PPP2R1B	5519	ENSG00000137713		Lung cancer, 211980 (3), Autosomal recessive	Ppp2r1b (MGI:1920949)
chr11	111776095	111871580	11q23	11q23.1	606941	ALG9, DIBD1, CDG1L, GIKANIS	Alg9, yeast, homolog of	ALG9	79796	ENSG00000086848		Congenital disorder of glycosylation, type Il, 608776 (3), Autosomal recessive; Gillessen-Kaesbach-Nishimura syndrome, 263210 (3), Autosomal recessive	Alg9 (MGI:1924753)
chr11	111908619	111913212	11q22.3-q23.1	11q23.1	123590	CRYAB, CRYA2, CTPP2, CMD1II, CTRCT16, MFM2	Crystallin, alpha B	CRYAB	1410	ENSG00000109846		Cardiomyopathy, dilated, 1II, 615184 (3), Autosomal dominant; Cataract 16, multiple types, 613763 (3), Autosomal recessive, Autosomal dominant; Myopathy, myofibrillar, 2, 608810 (3), Autosomal dominant; Myopathy, myofibrillar, fatal infantile hypertonic, alpha-B crystallin-related, 613869 (3), Autosomal recessive	Cryab (MGI:88516)
chr11	111912735	111914092	11q22-q23	11q23.1	602179	HSPB2	Heat-shock 27kD protein-2	HSPB2	3316	ENSG00000170276			Hspb2 (MGI:1916503)
chr11	111927143	112022649	11q23.1	11q23.1	610493	DIXDC1, CCD1, KIAA1735	DIX domain-containing protein 1	DIXDC1	85458	ENSG00000150764			Dixdc1 (MGI:2679721)
chr11	112024813	112064277	11q23.1	11q23.1	608770	DLAT, PDCE2	Dihydrolipoamide S-acetyltransferase	DLAT	1737	ENSG00000150768		Pyruvate dehydrogenase E2 deficiency, 245348 (3), Autosomal recessive	Dlat (MGI:2385311)
chr11	112086823	112095800	11q23	11q23.1	602690	SDHD, PGL1, CWS3	Succinate dehydrogenase complex, subunit D, integral membrane protein	SDHD	6392	ENSG00000204370		Carcinoid tumors, intestinal, 114900 (3), Autosomal dominant; Cowden syndrome 3, 615106 (3); Merkel cell carcinoma, somatic (3); Mitochondrial complex II deficiency, 252011 (3), Autosomal recessive; Paraganglioma and gastric stromal sarcoma, 606864 (3); Paragangliomas 1, with or without deafness, 168000 (3), Autosomal dominant; Pheochromocytoma, 171300 (3), Autosomal dominant	Sdhd (MGI:1914175)
chr11	112143250	112164116	11q22.2-q22.3	11q23.1	600953	IL18, IGIF	Interleukin-18	IL18	3606	ENSG00000150782			Il18 (MGI:107936)
chr11	112167371	112172555	Chr.11	11q23.1	605791	TEX12	Testis-expressed gene 12	TEX12	56158	ENSG00000150783			Tex12 (MGI:1913904)
chr11	112175484	112218928	11q22.3-q23.1	11q23.1	611740	BCO2, BCDO2	Beta-carotene oxygenase 2	BCO2	83875	ENSG00000197580			Bco2 (MGI:2177469)
chr11	112226364	112233972	11q22.3-q23.3	11q23.1	612719	PTS	6-pyruvoyltetrahydropterin synthase	PTS	5805	ENSG00000150787		Hyperphenylalaninemia, BH4-deficient, A, 261640 (3), Autosomal recessive	Pts (MGI:1338783)
chr11	112248152	112260859	11q23.2	11q23.1	611904	C11orf34, PLET1	Chromosome 11 open reading frame 34	PLET1	349633	ENSG00000188771			Plet1 (MGI:1923759)
chr11	112961246	113278435	11q23.1	11q23.2	116930	NCAM1, MSK39	Neural cell adhesion molecule 1	NCAM1	4684	ENSG00000149294	defective in "staggerer" in mice		Ncam1 (MGI:97281)
chr11	113314528	113385951	11q23.2	11q23.2	610732	TTC12, TPARM	Tetratricopeptide repeat domain 12	TTC12	54970	ENSG00000149292			Ttc12 (MGI:2444588)
chr11	113386013	113400417	11q23.2	11q23.2	608774	ANKK1	Ankyrin repeat and kinase domain containing 1	ANKK1	255239	ENSG00000170209		Dopamine receptor D2, reduced brain density of (3)	Ankk1 (MGI:3045301)
chr11	113409594	113475278	11q23.1	11q23.2	126450	DRD2	Dopamine receptor D2	DRD2	1813	ENSG00000149295	11q22-q23 junction; 150kb 5' to NCAM; centromeric to APOA1; telomeric to STMY1		Drd2 (MGI:94924)
chr11	113687545	113709810	11q23.3	11q23.2	606751	TMPRSS5	Transmembrane protease, serine 5	TMPRSS5	80975	ENSG00000166682			Tmprss5 (MGI:1933407)
chr11	113733182	113773762	11q23.2	11q23.2	603954	ZW10	Zeste-white 10, Drosophila, homolog of	ZW10	9183	ENSG00000086827			Zw10 (MGI:1349478)
chr11	113797874	113875569	11q23	11q23.2	610748	USP28, KIAA1515	Ubiquitin-specific protease 28	USP28	57646	ENSG00000048028			Usp28 (MGI:2442293)
chr11	113898922	113949118	11q23.1	11q23.2	604654	HTR3B	5-hydroxytryptamine receptor 3B	HTR3B	9177	ENSG00000149305			Htr3b (MGI:1861899)
chr11	113975074	113990312	11q23.1-q23.2	11q23.2	182139	HTR3	5-hydroxytryptamine (serotonin) receptor-3	HTR3A	3359	ENSG00000166736			Htr3a (MGI:96282)
chr11	114059575	114256769	11q23.1	11q23.2	176797	ZBTB16, ZNF145, PLZF	Zinc finger- and BTB domain-containing protein 16 (promyelocytic leukemia zinc finger)	ZBTB16	7704	ENSG00000109906	fused with RARA in APL of t(11;17) type	Leukemia, acute promyelocytic, PL2F/RARA type (3); Skeletal defects, genital hypoplasia, and mental retardation, 612447 (3), Autosomal recessive	Zbtb16 (MGI:103222)
chr11	114295812	114312515	11q23.1	11q23.2	600008	NNMT	Nicotinamide N-methyltransferase	NNMT	4837	ENSG00000166741		Homocysteine plasma level, 600008 (2)	Nnmt (MGI:1099443)
chr11	114400528	114410609	11q23.1-q23.2	11q23.2	612413	RBM7	RNA-binding motif protein 7	RBM7	10179	ENSG00000076053			Rbm7 (MGI:1914260)
chr11	114439385	114450278	11q23.1-q23.2	11q23.2	607149	REXO2, RFN	RNA exonuclease 2, S. cerevisiae, homolog of	REXO2	25996	ENSG00000076043			Rexo2 (MGI:1888981)
chr11	114600000	130900000	11q23.3-q24		607086	AAT1, FAA1	Aortic aneurysm, familial thoracic 1		252842			Aortic aneurysm, familial thoracic 1, 607086 (2)	
chr11	114600000	121300000	11q23.3		605201	HDLCQ14, HYLAP	High density lipoprotein cholesterol level quantitative trait locus 14		56801			High density lipoprotein cholesterol level QTL14, 605201 (2)	
chr11	115173624	115504522	11q23.2	11q23.3	605686	CADM1, IGSF4, TSLC1	Cell adhesion molecule 1	CADM1	23705	ENSG00000182985			Cadm1 (MGI:1889272)
chr11	116778188	116789271	11q23.3	11q23.3	603901	ZPR1, ZNF259	ZPR1 zinc finger protein	ZPR1	8882	ENSG00000109917			Zpr1 (MGI:1330262)
chr11	116789369	116792419	11q23	11q23.3	606368	APOA5	Apolipoprotein A-V	APOA5	116519	ENSG00000110243	proximal to APOA1, APOC3, APOA4	Hyperchylomicronemia, late-onset, 144650 (3), Autosomal dominant; {Hypertriglyceridemia, susceptibility to}, 145750 (3), Autosomal dominant	Apoa5 (MGI:1913363)
chr11	116820701	116823294	11q23	11q23.3	107690	APOA4	Apolipoprotein A-IV	APOA4	337	ENSG00000110244	12 kb 3' to APOA1		Apoa4 (MGI:88051)
chr11	116829891	116833073	11q23	11q23.3	107720	APOC3, HALP2	Apolipoprotein C-III	APOC3	345	ENSG00000110245	2.6kb 3' to APOA1	Apolipoprotein C-III deficiency, 614028 (3)	
chr11	116835750	116837949	11q23	11q23.3	107680	APOA1	Apolipoprotein A-I	APOA1	335	ENSG00000118137		Amyloidosis, 3 or more types, 105200 (3), Autosomal dominant; ApoA-I and apoC-III deficiency, combined (3); Corneal clouding, autosomal recessive (3); Hypoalphalipoproteinemia, 604091 (3)	Apoa1 (MGI:88049)
chr11	116843401	117098452	11q23.3	11q23.3	614776	SIK3, KIAA0999	Salt-inducible kinase 3	SIK3	23387	ENSG00000160584			Sik3 (MGI:2446296)
chr11	117144283	117178172	11q23	11q23.3	602508	PAFAH1B2	Platelet-activating factor acetylhydrolase, isoform Ib, beta subunit	PAFAH1B2	5049	ENSG00000168092			Pafah1b2 (MGI:108415)
chr11	117179222	117197444	11q23.3	11q23.3	617551	SIDT2	SID1 transmembrane family, member 2	SIDT2	51092	ENSG00000149577			Sidt2 (MGI:2446134)
chr11	117199293	117207464	11q23.2	11q23.3	600818	TAGLN, SMCC, SM22	Transgelin	TAGLN	6876	ENSG00000149591			Tagln (MGI:106012)
chr11	117201155	117232524	11q23.3	11q23.3	604872	PCSK7, PC8, PC7, LPC	Proprotein convertase, subtilisin/kexin-type, 7	PCSK7	9159	ENSG00000160613			Pcsk7 (MGI:107421)
chr11	117285685	117316255	11q23.3	11q23.3	604252	BACE1, BACE	Beta-site amyloid beta A4 precursor protein-cleaving enzyme (secretase, beta; memapsin 2)	BACE1	23621	ENSG00000186318			Bace1 (MGI:1346542)
chr11	117291345	117292169	11q23.3	11q23.3	614263	BACE1AS	BACE1 antisense RNA	BACE1-AS	100379571				
chr11	117316345	117413265	11q23.3	11q23.3	614848	CEP164, KIAA1052	Centrosomal protein, 164kD	CEP164	22897	ENSG00000110274		Nephronophthisis 15, 614845 (3), Autosomal recessive	Cep164 (MGI:2384878)
chr11	117427771	117797260	11q23	11q23.3	611782	DSCAML1, KIAA1132	Down syndrome cell adhesion molecule-like 1	DSCAML1	57453	ENSG00000177103			Dscaml1 (MGI:2150309)
chr11	117820074	117828091	11q23	11q23.3	601814	FXYD2, ATP1G1, HOMG2	FXYD domain-containing ion transport regulator 2 (sodium-potassium-ATPase, gamma polypeptide)	FXYD2	486	ENSG00000137731		Hypomagnesemia 2, renal, 154020 (3), Autosomal dominant	
chr11	117836975	117877485	Chr.11	11q23.3	606683	FXYD6	FXYD domain-containing ion transport regulator 6	FXYD6	53826	ENSG00000137726			Fxyd6 (MGI:1890226)
chr11	117900640	117929452	11q23	11q23.3	610050	TMPRSS13, MSPL, MSPS	Transmembrane protein, serine 13	TMPRSS13	84000	ENSG00000137747			Tmprss13 (MGI:2682935)
chr11	117986390	118001482	11q23.3	11q23.3	146933	IL10RA, IL10R, IBD28	Interleukin-10 receptor, alpha	IL10RA	3587	ENSG00000110324		Inflammatory bowel disease 28, early onset, autosomal recessive, 613148 (3), Autosomal recessive	Il10ra (MGI:96538)
chr11	118077011	118125504	11q23.3	11q23.3	606565	TMPRSS4	Transmembrane protease, serine 4	TMPRSS4	56649	ENSG00000137648			Tmprss4 (MGI:2384877)
chr11	118133376	118152914	11q23	11q23.3	608256	SCN4B, LQT10, ATFB17	Sodium channel, voltage-gated, type IV, beta subunit	SCN4B	6330	ENSG00000177098		Atrial fibrillation, familial, 17, 611819 (3), Autosomal dominant; Long QT syndrome-10, 611819 (3), Autosomal dominant	Scn4b (MGI:2687406)
chr11	118162803	118176621	11q23	11q23.3	601327	SCN2B, ATFB14	Sodium channel, voltage-gated, type II, beta polypeptide	SCN2B	6327	ENSG00000149575		Atrial fibrillation, familial, 14, 615378 (3), Autosomal dominant	Scn2b (MGI:106921)
chr11	118193726	118225093	11q23	11q23.3	609770	AMICA1, JAML	Adhesion molecule, interacts with CXADR antigen 1	JAML	120425	ENSG00000160593			Jaml (MGI:2685484)
chr11	118226689	118252367	11q23.3	11q23.3	611707	MPZL3	Myelin protein zero-like 3	MPZL3	196264	ENSG00000160588			Mpzl3 (MGI:2442647)
chr11	118253415	118264535	11q24	11q23.3	604873	MPZL2, EVA1, EVA	Myelin protein zero-like 2	MPZL2	10205	ENSG00000149573			Mpzl2 (MGI:1289160)
chr11	118304579	118316174	11q23	11q23.3	186830	CD3E, IMD18	CD3E antigen, epsilon polypeptide (TiT3 complex)	CD3E	916	ENSG00000198851		Immunodeficiency 18, 615615 (3), Autosomal recessive; Immunodeficiency 18, SCID variant, 615615 (3), Autosomal recessive	Cd3e (MGI:88332)
chr11	118339073	118342743	11q23	11q23.3	186790	CD3D, T3D, IMD19	CD3D antigen, delta polypeptide (TiT3 complex)	CD3D	915	ENSG00000167286	3 CD3 genes in 50kb	Immunodeficiency 19, 615617 (3), Autosomal recessive	Cd3d (MGI:88331)
chr11	118344343	118353781	11q23	11q23.3	186740	CD3G, IMD17	CD3G antigen, gamma polypeptide (TiT3 complex)	CD3G	917	ENSG00000160654		Immunodeficiency 17, CD3 gamma deficient, 615607 (3), Autosomal recessive	Cd3g (MGI:88333)
chr11	118359580	118399210	Chr.11	11q23.3	603753	UBE4A, UFD2, E4	Ubiquitination factor E4A	UBE4A	9354	ENSG00000110344			Ube4a (MGI:2154580)
chr11	118401388	118409846	11q22.3	11q23.3	617473	ATP5JG	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G	ATP5MG	10632	ENSG00000167283			Atp5l (MGI:1351597)
chr11	118436489	118526831	11q23	11q23.3	159555	KMT2A, MLL, HRX, HTRX1, WDSTS	Lysine (K)-specific methyltransferase 2E	KMT2A	4297	ENSG00000118058	fuses with ENL, AF4, AF9, GMPS	Leukemia, myeloid/lymphoid or mixed-lineage, 159555 (2), Autosomal dominant; Wiedemann-Steiner syndrome, 605130 (3), Autosomal dominant	Kmt2a (MGI:96995)
chr11	118531087	118546597	11q23.3	11q23.3	613934	TMEM25	Transmembrane protein 25	TMEM25	84866	ENSG00000149582			Tmem25 (MGI:1918937)
chr11	118572386	118603032	11q23.3	11q23.3	600820	ARCN1, SRMMD	Archain 1	ARCN1	372	ENSG00000095139	60kb telomeric to MLL	Short stature, rhizomelic, with microcephaly, micrognathia, and developmental delay, 617164 (3), Autosomal dominant	Arcn1 (MGI:2387591)
chr11	118606295	118658037	11q23.3	11q23.3	612834	PHLDB1, LL5A, KIAA0638	Pleckstrin homology-like domain, family B, member 1	PHLDB1	23187	ENSG00000019144			Phldb1 (MGI:2143230)
chr11	118658231	118679671	11q23	11q23.3	275360	TREH, TREHD	Trehalase	TREH	11181	ENSG00000118094		Trehalase deficiency, 612119 (3), Autosomal recessive	Treh (MGI:1926230)
chr11	118747762	118791695	11q23.3	11q23.3	600326	DDX6, HLR2	DEAD/H box-6 (RNA helicase, 54kD)	DDX6	1656	ENSG00000110367			Ddx6 (MGI:104976)
chr11	118883765	118896270	11q23.3	11q23.3	601613	CXCR5, BLR1	Chemokine, CXC motif, receptor 5	CXCR5	643	ENSG00000160683			Cxcr5 (MGI:103567)
chr11	118896139	118926071	11q23.3	11q23.3	609004	BCL9L	B-cell CLL/lymphoma 9-like	BCL9L	283149	ENSG00000186174			Bcl9l (MGI:1933114)
chr11	118956297	118958558	11q23.3	11q23.3	611558	UPK2, UP2, UPII	Uroplakin 2	UPK2	7379	ENSG00000110375			Upk2 (MGI:98913)
chr11	118971397	118981600	11q23.3	11q23.3	615755	FOXR1, FOXN5	Forkhead box R1	FOXR1	283150	ENSG00000176302			Foxr1 (MGI:2685961)
chr11	119015711	119018346	11q23.3	11q23.3	180465	RPS25	Ribosomal protein S25	RPS25	6230	ENSG00000118181			Rps25 (MGI:1922867)
chr11	119018468	119023673	11q23.3	11q23.3	610971	TRAPPC4	Trafficking protein particle complex, subunit 4 (synbindin)	TRAPPC4	51399	ENSG00000196655			Trappc4 (MGI:1926211)
chr11	119024350	119030905	11q23	11q23.3	602671	SLC37A4, G6PT1	Solute carrier family 37 (glucose-6-phosphate transporter), member 4	SLC37A4	2542	ENSG00000137700		Glycogen storage disease Ib, 232220 (3), Autosomal recessive; Glycogen storage disease Ic, 232240 (3), Autosomal recessive	Slc37a4 (MGI:1316650)
chr11	119044184	119057245	Chr.11	11q23.3	601746	HYOU1	Hypoxia-upregulated 1	HYOU1	10525	ENSG00000149428			Hyou1 (MGI:108030)
chr11	119067751	119081977	11q23.3	11q23.3	608549	VPS11, HLD12	Vacuolar protein sorting 11, yeast, homolog of	VPS11	55823	ENSG00000160695		Leukodystrophy, hypomyelinating, 12, 616683 (3), Autosomal recessive	Vps11 (MGI:1918982)
chr11	119084863	119093548	11q23.3	11q23.3	609806	HMBS, PBGD, UPS	Hydroxymethylbilane synthase	HMBS	3145	ENSG00000256269		Porphyria, acute intermittent, 176000 (3), Autosomal dominant; Porphyria, acute intermittent, nonerythroid variant, 176000 (3), Autosomal dominant	Hmbs (MGI:96112)
chr11	119093873	119095466	11q23.2-q23.3	11q23.3	601772	H2AX	H2AX histone	H2AFX	3014	ENSG00000188486			H2afx (MGI:102688)
chr11	119096502	119102074	11q23.3	11q23.3	191350	DPAGT1, DPAGT2, DGPT, CDG1J, CMSTA2, CMS13	Dolichyl-phosphate N-acetylglucosamine phosphotransferase	DPAGT1	1798	ENSG00000172269		Congenital disorder of glycosylation, type Ij, 608093 (3), Autosomal recessive; Myasthenic syndrome, congenital, 13, with tubular aggregates, 614750 (3), Autosomal recessive	Dpagt1 (MGI:1196396)
chr11	119106751	119118346	11q23.3	11q23.3	617582	C2CD2L, TMEM24	C2 calcium-dependent domain-containing protein 2-like	C2CD2L	9854	ENSG00000172375			C2cd2l (MGI:1919014)
chr11	119121522	119135054	Chr.11	11q23.3	607099	MIZF	MBD2-interaction zinc finger protein	HINFP	25988	ENSG00000172273			Hinfp (MGI:2429620)
chr11	119149039	119162665	11q23.3	11q23.3	607784	ABCG4, WHITE2	ATP-binding cassette, subfamily G, member 4	ABCG4	64137	ENSG00000172350			Abcg4 (MGI:1890594)
chr11	119168333	119184015	11q23.3	11q23.3	611947	NLRX1, NOD9, CLR11.3	NLR family member X1	NLRX1	79671	ENSG00000160703			Nlrx1 (MGI:2429611)
chr11	119185456	119190222	11q23	11q23.3	607146	PDZD3, IKEPP	PDZ domain-containing 3	PDZD3	79849	ENSG00000172367			Pdzd3 (MGI:2429554)
chr11	119206275	119308148	11q23.3	11q23.3	165360	CBL, CBL2, NSLL	Cas-Br-M ecotropic retroviral transforming sequence (Oncogene CBL2)	CBL	867	ENSG00000110395	mutation identified in 1 JMML family	?Juvenile myelomonocytic leukemia, 607785 (3), Autosomal dominant, Somatic mutation; Noonan syndrome-like disorder with or without juvenile myelomonocytic leukemia, 613563 (3), Autosomal dominant	Cbl (MGI:88279)
chr11	119305758	119317129	11q23.3	11q23.3	155735	MCAM, MUC18, CD146	Melanoma adhesion molecule	MCAM	4162	ENSG00000076706			Mcam (MGI:1933966)
chr11	119334499	119337313	11q23	11q23.3	606130	RNF26	RING finger protein-26	RNF26	79102	ENSG00000173456			Rnf26 (MGI:2388131)
chr11	119338933	119346672	11q23.3	11q23.3	608752	C1QTNF5, CTRP5, LORD	C1q- and tumor necrosis factor-related protein 5	C1QTNF5	114902	ENSG00000223953		Retinal degeneration, late-onset, autosomal dominant, 605670 (3), Autosomal dominant	C1qtnf5 (MGI:2385958)
chr11	119338933	119346672	11q23	11q23.3	606227	MFRP, MCOP5, NNO2	Membrane-type frizzled-related protein	MFRP	83552	ENSG00000235718		Microphthalmia, isolated 5, 611040 (3), Autosomal recessive; Nanophthalmos 2, 609549 (3)	Mfrp (MGI:2385957)
chr11	119417940	119424984	11q23.3	11q23.3	188230	THY1	Thy-1 T-cell antigen	THY1	7070	ENSG00000154096			Thy1 (MGI:98747)
chr11	119638097	119728724	11q23-q24	11q23.3	600644	NECTIN1, PVRL1, HVEC, PVRR1, PRR1, ED4, OFC7, CLPED1	Nectin 1	NECTIN1	5818	ENSG00000110400		Cleft lip/palate-ectodermal dysplasia syndrome, 225060 (3), Autosomal recessive; Orofacial cleft 7, 225060 (3), Autosomal recessive	Nectin1 (MGI:1926483)
chr11	120111274	120138154	11q23.3	11q23.3	610658	TRIM29, ATDC	Tripartite motif-containing protein 29	TRIM29	23650	ENSG00000137699			Trim29 (MGI:1919419)
chr11	120236639	120319943	11q23.3	11q23.3	607394	POU2F3, OCT11	POU domain, class 2, transcription factor 3	POU2F3	25833	ENSG00000137709			Pou2f3 (MGI:102565)
chr11	120336275	120489935	11q23.3	11q23.3	604763	ARHGEF12, LARG, KIAA0382	Rho guanine nucleotide exchange factor 12, leukemia-associated	ARHGEF12	23365	ENSG00000196914	fused with MLL in AML		Arhgef12 (MGI:1916882)
chr11	120511745	120988804	11q22.3	11q23.3	600282	GRIK4	Glutamate receptor, ionotropic, kainate 4	GRIK4	2900	ENSG00000149403			Grik4 (MGI:95817)
chr11	121024071	121090775	11q23.3	11q23.3	610451	LRRC35, EL	Leucine-rich repeat-containing protein 35	TBCEL	219899	ENSG00000154114			Tbcel (MGI:1925543)
chr11	121102665	121190805	11q22-q24	11q23.3	602574	TECTA, DFNA8, DFNA12, DFNB21	Tectorin, alpha	TECTA	7007	ENSG00000109927		Deafness, autosomal dominant 8/12, 601543 (3), Autosomal dominant; Deafness, autosomal recessive 21, 603629 (3), Autosomal recessive	Tecta (MGI:109575)
chr11	121292678	121313409	11q23.3	11q23.3-q24.1	602286	SC5DL, ERG3	Sterol C5-desaturase-like	SC5D	6309	ENSG00000109929		Lathosterolosis, 607330 (3), Autosomal recessive	Sc5d (MGI:1353611)
chr11	121300000	135086622	11q24-q25		612161	ANIB7	Aneurysm, intracranial berry, 7		100188885		between rs618176 and rs1940033	Aneurysm, intracranial berry, 7, 612161 (2)	
chr11	121300000	124000000	11q24.1		612559	CLLS5	Leukemia, chronic lymphocytic susceptibility to, 5		100270644		associated with rs735665	{Leukemia, chronic lymphocytic susceptibility to, 5}, 612559 (2)	
chr11	121300000	130900000	11q24		609670	MGR9	Migraine with aura, susceptibility to, 9		100415943		max lod at GATA64D03	{Migraine with aura, susceptibility to, 9}, 609670 (2)	
chr11	121300000	130900000	11q24		609469	NEDE	Nephropathy, progressive, with deafness		619410		max lod at D11S4464	Nephropathy, progressive, with deafness, 609469 (2)	
chr11	121452202	121633761	11q23.2-q24.2	11q24.1	602005	SORL1, LR11, SORLA	Sortilin-related receptor, L(DLR class) A repeats-containing	SORL1	6653	ENSG00000137642			Sorl1 (MGI:1202296)
chr11	122028328	122422870	11q24.1	11q24.1	615965	MIR100HG, AGD1	MIR100-LET7A2 cluster host gene, noncoding	MIR100HG	399959				
chr11	122099756	122099843	11q24.1	11q24.1	610104	MIR125B1, MIRN125B1	Micro RNA 125B-1	MIR125B1	406911				
chr11	122115353	122116214	11q24.1	11q24.1	608853	BLID, BRCC@	BH3-like motif-containing cell death inducer	BLID	414899	ENSG00000259571	distal to SORL1		
chr11	122146521	122146592	11q24.1	11q24.1	612142	MIRLET7A2, LET7A2, MIRNLET7A2	Micro RNA let7a2	MIRLET7A2	406882				
chr11	122152228	122152307	11q24.1	11q24.1	613186	MIR100, MIRN100	Micro RNA 100	MIR100	406892				
chr11	122655689	122814478	11q24.1	11q24.1	609201	UBASH3B, STS1, KIAA1959, P70	Ubiquitin-associated and SH3 domain-containing protein B	UBASH3B	84959	ENSG00000154127			Ubash3b (MGI:1920078)
chr11	122838418	122872642	11q22-q23	11q24.1	612597	CRTAM	Cytotoxic and regulatory T-cell molecule	CRTAM	56253	ENSG00000109943			Crtam (MGI:1859822)
chr11	122881639	122963861	11q24.1	11q24.1	617594	C11orf63, JHY	Chromosome 11 open reading frame 63	JHY	79864	ENSG00000109944			Jhy (MGI:1918239)
chr11	122977648	122981670	11q24.1	11q24.1	611074	BSX1	Brain-specific homeobox, mouse, homolog of	BSX	390259	ENSG00000188909			Bsx (MGI:2669849)
chr11	123057491	123062365	11q23.3-q25	11q24.1	600816	HSPA8, HSP73	Heat-shock 70kD protein-8 (HSP73)	HSPA8	3312	ENSG00000109971			Hspa8 (MGI:105384)
chr11	123072005	123195304	11q24.1	11q24.1	611693	CLMP, ASAM, ACAM, CSBS	Coxsackievirus- and adenovirus receptor-like membrane protein	CLMP	79827	ENSG00000166250		Congenital short bowel syndrome, 615237 (3), Autosomal recessive	Clmp (MGI:1918816)
chr11	123629186	123654606	11q23.3	11q24.1	608214	SCN3B, SCNB3, BRGDA7, ATFB16	Sodium channel, voltage-gated, type III, beta subunit	SCN3B	55800	ENSG00000166257		Atrial fibrillation, familial, 16, 613120 (3), Autosomal dominant; Brugada syndrome 7, 613120 (3), Autosomal dominant	Scn3b (MGI:1918882)
chr11	123723926	123741682	11q23.3	11q24.1	603430	ZNF202	Zinc finger protein-202	ZNF202	7753	ENSG00000166261			Zfp202 (MGI:1933401)
chr11	124115403	124146911	11q23	11q24.2	602929	VWA5A, LOH11CR2A, BCSC1	von Willebrand factor A domain-containing protein 5A	VWA5A	4013	ENSG00000110002			Vwa5a (MGI:1915026)
chr11	124611556	124620355	11q24.2	11q24.2	608422	PANX3, PX3	Pannexin 3	PANX3	116337	ENSG00000154143			Panx3 (MGI:1918881)
chr11	124622845	124635925	11q24.2	11q24.2	610614	TBRG1, NIAM	Transforming growth factor-beta regulator 1	TBRG1	84897	ENSG00000154144			Tbrg1 (MGI:1100877)
chr11	124635788	124676302	11q24	11q24.2	610079	SIAE, AIS6	Sialic acid acetylesterase	SIAE	54414	ENSG00000110013		{Autoimmune disease, susceptibility to, 6}, 613551 (3)	Siae (MGI:104803)
chr11	124739932	124747205	11q24	11q24.2	602350	NRGN	Neurogranin	NRGN	4900	ENSG00000154146			
chr11	124747471	124752271	11q24	11q24.2	606011	VSIG2, CTXL	V-set and immunoglobulin domains-containing protein 2	VSIG2	23584	ENSG00000019102			Vsig2 (MGI:1928009)
chr11	124753122	124762326	11q24.2	11q24.2	614281	ESAM	Endothelial cell adhesion molecule	ESAM	90952	ENSG00000149564			Esam (MGI:1916774)
chr11	124865408	124881473	11q23-q25	11q24.2	608630	ROBO3, RBIG1, RIG1, HGPPS1	Roundabout, Drosophila, homolog of, 3	ROBO3	64221	ENSG00000154134		Gaze palsy, familial horizontal, with progressive scoliosis, 1, 607313 (3), Autosomal recessive	Robo3 (MGI:1343102)
chr11	124884217	124897934	11q24.2	11q24.2	607528	ROBO4	Roundabout, Drosophila, homolog of, 4	ROBO4	54538	ENSG00000154133			Robo4 (MGI:1921394)
chr11	124919243	124936411	11q24	11q24.2	611642	HEPACAM, MLC2A, MLC2B	Hepatocyte cell adhesion molecule	HEPACAM	220296	ENSG00000165478		Megalencephalic leukoencephalopathy with subcortical cysts 2A, 613925 (3), Autosomal recessive; Megalencephalic leukoencephalopathy with subcortical cysts 2B, remitting, with or without mental retardation, 613926 (3), Autosomal dominant	Hepacam (MGI:1920177)
chr11	124919249	124920676	11q24.2	11q24.2	611641	HEPN1	Cancer susceptibility gene HEPN1	HEPN1	641654	ENSG00000221932			
chr11	125111996	125433388	11q24-q25	11q24.2	613066	PKNOX2, PREP2	PBX/Knotted 1 homeobox 2	PKNOX2	63876	ENSG00000165495			Pknox2 (MGI:2445415)
chr11	125445744	125496309	11q24.2	11q24.2	604825	FEZ1	Fasciculation and elongation protein zeta 1	FEZ1	9638	ENSG00000149557			Fez1 (MGI:2670976)
chr11	125569215	125584688	11q23	11q24.2	605170	EI24, PIG8, EPG4	Etoposide-induced 1.4 mRNA	EI24	9538	ENSG00000149547			Ei24 (MGI:108090)
chr11	125592794	125622758	11q23.3	11q24.2	601134	STT3A, ITM1, TMC	STT3A, subunit of the oligosaccharyltransferase complex (catalytic)	STT3A	3703	ENSG00000134910	mutation identified in 1 family	?Congenital disorder of glycosylation, type Iw, 615596 (3), Autosomal recessive	Stt3a (MGI:105124)
chr11	125624909	125676255	11q22-q23	11q24.2	603078	CHEK1, CHK1	Checkpoint kinase 1, S. pombe, homolog of	CHEK1	1111	ENSG00000149554			Chek1 (MGI:1202065)
chr11	125672333	125680897	11p12-q13	11q24.2	102525	ACRV1	Acrosomal vesicle protein-1	ACRV1	56	ENSG00000134940			Acrv1 (MGI:104590)
chr11	125746292	125749847	11q24	11q24.2	606861	PATE	Prostate- and testis-expressed gene	PATE1	160065	ENSG00000171053			Pate1 (MGI:4936886)
chr11	125883613	125900645	11q24.2	11q24.2	610693	HYLS1, FLJ32915	HYLS1 gene	HYLS1	219844	ENSG00000198331		Hydrolethalus syndrome, 236680 (3), Autosomal recessive	Hyls1 (MGI:1924082)
chr11	125893484	125903277	11q24.2	11q24.2	616283	PUS3, MRT55	Pseudouridylate synthase 3	PUS3	83480	ENSG00000110060	mutation identified in 1 MRT55 family	?Mental retardation, autosomal recessive 55, 617051 (3), Autosomal recessive	Pus3 (MGI:1914299)
chr11	125903375	125923403	11q24	11q24.2	607663	GRTH	Gonadotropin-regulated testicular RNA helicase	DDX25	29118	ENSG00000109832			Ddx25 (MGI:1353582)
chr11	125956812	126063334	11q24.2	11q24.2	608707	CDON, CDO, HPE11	Cell adhesion molecule-related/downregulated by oncogenes	CDON	50937	ENSG00000064309		Holoprosencephaly 11, 614226 (3), Autosomal dominant, Isolated cases	Cdon (MGI:1926387)
chr11	126202093	126211691	11q24.2	11q24.2	617488	RPUSD4	RNA pseudouridylate synthase domain-containing protein 4	RPUSD4	84881	ENSG00000165526			Rpusd4 (MGI:1919239)
chr11	126211413	126264539	11q24.2	11q24.2	616587	FAM118B	Family with sequence similarity 118, member B	FAM118B	79607	ENSG00000197798			Fam118b (MGI:1924483)
chr11	126255150	126268981	11q23-q24	11q24.2	182180	SRPRA, SRPR, DP	Signal recognition particle receptor, alpha subunit	SRPRA	6734	ENSG00000182934			Srpr (MGI:1914648)
chr11	126269039	126278131	11q24.2	11q24.2	613622	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	FOXRED1	55572	ENSG00000110074		Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Foxred1 (MGI:2446262)
chr11	126283086	126294932	11q23-q24	11q24.2	606252	TIRAP, BACTS1	TIR domain-containing adaptor protein	TIRAP	114609	ENSG00000150455		{Bacteremia, protection against}, 614382 (3); {Malaria, protection against}, 611162 (3); {Pneumococcal disease, invasive, protection against}, 610799 (3); {Tuberculosis, protection against}, 607948 (3)	Tirap (MGI:2152213)
chr11	126303751	126350004	11q24.2	11q24.2	610534	DCPS, HINT5, DCS1, ARS	Decapping enzyme, scavenger	DCPS	28960	ENSG00000110063		Al-Raqad syndrome, 616459 (3), Autosomal recessive	Dcps (MGI:1916555)
chr11	126355644	126414640	11q24.2	11q24.2	104240	ST3GAL4, SIAT4C, SIAT4, CGS23, NANTA3	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	ST3GAL4	6484	ENSG00000110080			St3gal4 (MGI:1316743)
chr11	126423492	127003459	11q24.2	11q24.2	607761	KIRREL3, NEPH2, KIAA1867, KIRRE, MRD4	Kin of IRRE-like 3	KIRREL3	84623	ENSG00000149571		Mental retardation, autosomal dominant 4, 612581 (3)	Kirrel3 (MGI:1914953)
chr11	128458760	128587592	11q23.3	11q24.3	164720	ETS1	Avian erythroblastosis virus E26 (v-ets) oncogene homolog-1	ETS1	2113	ENSG00000134954	shown by HSR; 19cM distal to THY1; Ewing sarcoma breakpoint region-2 splices to EWSR1		Ets1 (MGI:95455)
chr11	128685262	128813266	11q24	11q24.3	193067	FLI1, BDPLT21	Friend leukemia virus integration 1	FLI1	2313	ENSG00000151702	fused with EWS in Ewing sarcoma	Bleeding disorder, platelet-type, 21, 617443 (3), Autosomal recessive, Autosomal dominant	Fli1 (MGI:95554)
chr11	128691671	128696022	11q24.1	11q24.3	615815	SENCR, lncRNA9	Smooth muscle- and endothelial cell-enriched migration/differentiation-associated long noncoding RNA	SENCR	100507392				
chr11	128838013	128867372	11q24	11q24.3	600359	KCNJ1, ROMK1	Potassium inwardly-rectifying channel, subfamily J, member 1	KCNJ1	3758	ENSG00000151704		Bartter syndrome, type 2, 241200 (3), Autosomal recessive	Kcnj1 (MGI:1927248)
chr11	128891331	128921162	11q24	11q24.3	600734	KCNJ5, GIRK4, KATP1, LQT13	Potassium inwardly-rectifying channel, subfamily J, member 5	KCNJ5	3762	ENSG00000120457		Hyperaldosteronism, familial, type III, 613677 (3), Autosomal dominant; Long QT syndrome 13, 613485 (3), Autosomal dominant	Kcnj5 (MGI:104755)
chr11	128934731	128944232	11q24	11q24.3	605426	TP53AIP1, P53AIP1	Tumor protein p53-regulated apoptosis-inducing protein 1	TP53AIP1	63970	ENSG00000120471			
chr11	128965059	129279166	11q24.3	11q24.3	608541	ARHGAP32, RICS, GRIT, p200RHOGAP, p250GAP	Rho GTPase activating protein 32	ARHGAP32	9743	ENSG00000134909			Arhgap32 (MGI:2450166)
chr11	129295202	129296614	11q23.1-q23.2	11q24.3	194630	ZNF123	Zinc finger protein-123 (HZF-1)	ZNF123P	100188891				
chr11	129375236	129452278	11q25	11q24.3	604823	BARX2	BarH-like homeo box gene 2	BARX2	8538	ENSG00000043039			Barx2 (MGI:109617)
chr11	129863772	129895595	11q24-q25	11q24.3	164013	NFRKB	Nuclear factor related to kappa B-binding protein	NFRKB	4798	ENSG00000170322	most telomeric 11q marker		Nfrkb (MGI:2442410)
chr11	130069820	130144810	11q24	11q24.3	104776	APLP2	Amyloid beta (A4) precursor-like protein-2	APLP2	334	ENSG00000084234			Aplp2 (MGI:88047)
chr11	130159786	130210361	11q24-q25	11q24.3	606797	ST14, MTSP1, ARCI11	Suppression of tumorigenicity 14	ST14	6768	ENSG00000149418		Ichthyosis, congenital, autosomal recessive 11, 602400 (3), Autosomal recessive	St14 (MGI:1338881)
chr11	130404922	130428992	11q25	11q24.3	605175	ADAMTS8, METH2	A disintegrin-like and metalloproteinase with thrombospondin type-1 motif, 8	ADAMTS8	11095	ENSG00000134917			Adamts8 (MGI:1353468)
chr11	130448875	130478214	11q24.3	11q24.3	607509	ADAMTS15	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 15	ADAMTS15	170689	ENSG00000166106			Adamts15 (MGI:2449569)
chr11	130900000	135086622	11q25-qter		604060	DFNB20	Deafness, autosomal recessive 20	DFNB20	1713			Deafness, autosomal recessive 20, 604060 (2), Autosomal recessive	
chr11	130900000	135086622	11q25		602782	HJCD, HCLAP	Histiocytosis with joint contractures and sensorineural deafness					Histiocytosis-lymphadenopathy plus syndrome, 602782 (3), Autosomal recessive	
chr11	131370307	132336821	11q25	11q25	607938	NTM, HNT	Neurotrimin	NTM	50863	ENSG00000182667			Ntm (MGI:2446259)
chr11	132403360	133532611	11q25	11q25	600632	OPCML	Opioid-binding protein/cell adhesion molecule-like	OPCML	4978	ENSG00000183715		{Ovarian cancer, somatic}, 167000 (3)	Opcml (MGI:97397)
chr11	133835929	133845537	11q25	11q25	609805	SPATA19	Spermatogenesis-associated protein 19	SPATA19	219938	ENSG00000166118			Spata19 (MGI:1922719)
chr11	133908563	133956959	11q25	11q25	613773	IGSF9B, KIAA1030	Immunoglobulin superfamily, member 9B	IGSF9B	22997	ENSG00000080854			Igsf9b (MGI:2685354)
chr11	134068924	134151756	11q25	11q25	606871	JAM3	Junctional adhesion molecule 3	JAM3	83700	ENSG00000166086		Hemorrhagic destruction of the brain, subependymal calcification, and cataracts, 613730 (3), Autosomal recessive	Jam3 (MGI:1933825)
chr11	134152441	134225453	11q25	11q25	609276	NCAPD3, CAPD3, KIAA0056	Non-SMC condensin II complex subunit D3	NCAPD3	23310	ENSG00000151503			Ncapd3 (MGI:2142989)
chr11	134224604	134247791	11q25	11q25	610027	VPS26B	Vacuolar protein sorting 26, yeast, homolog of, B	VPS26B	112936	ENSG00000151502			Vps26b (MGI:1917656)
chr11	134248264	134253406	11q25	11q25	613739	THYN1, HSPC144, THY28	Thymocyte nuclear protein 1	THYN1	29087	ENSG00000151500			Thyn1 (MGI:1925112)
chr11	134253537	134265857	11q25	11q25	604773	ACAD8	Acyl-CoA dehydrogenase family, member 8	ACAD8	27034	ENSG00000151498		Isobutyryl-CoA dehydrogenase deficiency, 611283 (3)	Acad8 (MGI:1914198)
chr11	134378503	134411985	11q25	11q25	151290	B3GAT1, GLCATP, CD57, HNK1	Beta-1,3-glucuronyltransferase 1	B3GAT1	27087	ENSG00000109956			B3gat1 (MGI:1924148)
chr11	0	135086622	Chr.11		606049	AOCH	Acromegaloid features, overgrowth, cleft palate, and hernia		93956		pericentric inversion (46,XY,inv(11)(p15.3;q23.3))	Acromegaloid features, overgrowth, cleft palate, and hernia, 606049 (2)	
chr12	0	35500000	12p		107920	KAR	Aromatic alpha-keto acid reductase				?same as MDH1		
chr12	0	10000000	12p13.3		612372	MAFD9	Major affective disorder 9		100196917		associated with rs1006737	{Major affective disorder-9, susceptibility to}, 612372 (2)	
chr12	0	35500000	12p		601803	PKS	Pallister-Killian syndrome					Pallister-Killian syndrome, 601803 (4), Somatic mosaicism	
chr12	66793	178459	12p13.33	12p13.33	612118	IQSEC3, KIAA1110	IQ motif- and SEC7 domain-containing protein 3	IQSEC3	440073	ENSG00000120645			Iqsec3 (MGI:2677208)
chr12	190076	214204	12p13	12p13.33	603080	SLC6A12	Solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12	SLC6A12	6539	ENSG00000111181			Slc6a12 (MGI:95628)
chr12	220620	262929	12p13.3	12p13.33	615097	SLC6A13, GAT2, GAT3	Solute carrier family 6 (neurotransmitter transporter, GABA), member 13	SLC6A13	6540	ENSG00000010379			Slc6a13 (MGI:95629)
chr12	280056	389454	12p11	12p13.33	180202	KDM5A, JARID1A, RBP2, RBBP2	Lysine(K)-specific demethylase 5A	KDM5A	5927	ENSG00000073614			Kdm5a (MGI:2136980)
chr12	460376	561891	12p13.3	12p13.33	612220	B4GALNT3	Beta-1,4-N-acetylgalactosaminyltransferase 3	B4GALNT3	283358	ENSG00000139044			B4galnt3 (MGI:3041155)
chr12	564295	663740	12p13	12p13.33	607297	NINJ2	Nerve injury-induced protein 2	NINJ2	4815	ENSG00000171840			Ninj2 (MGI:1352751)
chr12	752592	911451	12p13	12p13.33	605232	WNK1, PRKWNK1, KDP, PHA2C, HSAN2, HSN2	WNK lysine deficient protein kinase 1	WNK1	65125	ENSG00000060237		Neuropathy, hereditary sensory and autonomic, type II, 201300 (3), Autosomal recessive; Pseudohypoaldosteronism, type IIC, 614492 (3), Autosomal dominant	Wnk1 (MGI:2442092)
chr12	911027	991194	12p13-p12.2	12p13.33	600392	RAD52	RAD52, yeast, homolog of	RAD52	5893	ENSG00000002016			Rad52 (MGI:101949)
chr12	1529855	1647212	12p13.3	12p13.33	606361	WNT5B	Wingless-type MMTV integration site family, member 5B	WNT5B	81029	ENSG00000111186			Wnt5b (MGI:98959)
chr12	1559640	1594189	12p13.33	12p13.33	609081	FBXL14, FBL14	F-box and leucine-rich repeat protein 14	FBXL14	144699	ENSG00000171823			Fbxl14 (MGI:2141676)
chr12	1691026	1788678	12p13.31	12p13.33	607946	ADIPOR2, FLJ21432	Adiponectin receptor 2	ADIPOR2	79602	ENSG00000006831			Adipor2 (MGI:93830)
chr12	1791956	1922605	12p13.3	12p13.33	608171	CACNA2D4, RCD4	Calcium channel, voltage-dependent, alpha-2/delta subunit 4	CACNA2D4	93589	ENSG00000151062		Retinal cone dystrophy 4, 610478 (3), Autosomal recessive	Cacna2d4 (MGI:2442632)
chr12	1941590	2004534	12p13.33	12p13.33	609843	DCP1B, DCP1	Decapping enzyme 1, S. cerevisiae, homolog of	DCP1B	196513	ENSG00000151065			Dcp1b (MGI:2442404)
chr12	1969551	2697948	12p13.3	12p13.33	114205	CACNA1C, CACNL1A1, CCHL1A1, TS	Calcium channel, voltage-dependent, L type, alpha 1C subunit	CACNA1C	775	ENSG00000151067		Brugada syndrome 3, 611875 (3); Timothy syndrome, 601005 (3), Autosomal dominant	Cacna1c (MGI:103013)
chr12	2794941	2805422	12p13.33	12p13.33	600611	FKBP4, FKBP52	FK506-binding protein 4	FKBP4	2288	ENSG00000004478			Fkbp4 (MGI:95543)
chr12	2812620	2859906	12p13.33	12p13.33	617421	ITFG2, FGGAP1	Integrin-alpha FG-GAP repeat-containing protein 2	ITFG2	55846	ENSG00000111203			Itfg2 (MGI:1915450)
chr12	2857679	2877154	12p13	12p13.33	602341	FOXM1, FKHL16, HFH11	Forkhead box M1	FOXM1	2305	ENSG00000111206			Foxm1 (MGI:1347487)
chr12	2876257	2889524	12p13.33	12p13.33	614085	RHNO1, RHINO, C12orf32	Rad9-, Rad1-, and Hus1-interacting nuclear orphan 1	RHNO1	83695	ENSG00000171792			
chr12	2890866	2941139	12p13	12p13.33	604730	TULP3	Tubby-like protein 3	TULP3	7289	ENSG00000078246			Tulp3 (MGI:1329045)
chr12	2959311	3040675	12p13.3-p13.2	12p13.33	601714	TEAD4, TCF13L1, RTEF1	TEA domain family, member 4	TEAD4	7004	ENSG00000197905			Tead4 (MGI:106907)
chr12	3077354	3286563	12p13.32	12p13.33-p13.32	613137	TSPAN9, NET5	Tetraspanin 9	TSPAN9	10867	ENSG00000011105			Tspan9 (MGI:1924558)
chr12	3381348	3593972	12p13.3	12p13.32	610086	PRMT8, HRMT1L3, HRMT1L4	Protein arginine methyltransferase 8	PRMT8	56341	ENSG00000111218			Prmt8 (MGI:3043083)
chr12	3613365	3753217	12p13.32	12p13.32	614178	EFCAB4B, CRACR2A	EF-hand calcium-binding domain-containing protein 4B	CRACR2A	84766	ENSG00000130038			Cracr2a (MGI:2685919)
chr12	3808860	3873470	12p13.3	12p13.32	616706	PARP11, ARTD11	Poly(ADP-ribose) polymerase family, member 11	PARP11	57097	ENSG00000111224			Parp11 (MGI:2141505)
chr12	4273735	4305355	12p13	12p13.32	123833	CCND2, MPPH3	Cyclin D2	CCND2	894	ENSG00000118971		Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 3, 615938 (3), Autosomal dominant	Ccnd2 (MGI:88314)
chr12	4321192	4360027	12p13.3	12p13.32	610775	TIGAR, C12orf5	TP53-induced glycolysis and apoptosis regulator	TIGAR	57103	ENSG00000078237			Tigar (MGI:2442752)
chr12	4368226	4379727	12p13.3	12p13.32	605380	FGF23, ADHR, HPDR2, PHPTC	Fibroblast growth factor 23	FGF23	8074	ENSG00000118972		Hypophosphatemic rickets, autosomal dominant, 193100 (3), Autosomal dominant; Osteomalacia, tumor-induced (1); Tumoral calcinosis, hyperphosphatemic, familial, 211900 (3), Autosomal recessive	Fgf23 (MGI:1891427)
chr12	4434141	4445798	12p13	12p13.32	134921	FGF6	Fibroblast growth factor-6	FGF6	2251	ENSG00000111241			Fgf6 (MGI:95520)
chr12	4487729	4538507	12p13.3	12p13.32	616082	C12orf4	Chromosome 12 open reading frame 4	C12orf4	57102	ENSG00000047621			D6Wsu163e (MGI:107893)
chr12	4538783	4560046	12p13.2-p13.1	12p13.32	603070	RAD51AP1, PIR51	Rad51-associated protein 1	RAD51AP1	10635	ENSG00000111247			Rad51ap1 (MGI:1098224)
chr12	4590071	4613887	12p13.32	12p13.32	609181	DYRK4	Dual-specificity tyrosine phosphorylation-regulated kinase 4	DYRK4	8798	ENSG00000010219			Dyrk4 (MGI:1330292)
chr12	4649097	4687553	12p	12p13.32	603834	NDUFA9	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 9	NDUFA9	4704	ENSG00000139180		Leigh syndrome due to mitochondrial complex I deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Ndufa9 (MGI:1913358)
chr12	4720585	4772725	12p13.3	12p13.32	606250	GALNT8	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8	GALNT8	26290	ENSG00000130035			
chr12	4806876	4851926	12p13	12p13.32	176257	KCNA6	Potassium voltage-gated channel, shaker-related subfamily, member 6	KCNA6	3742	ENSG00000130035			Kcna6 (MGI:96663)
chr12	4909906	4918255	12p13	12p13.32	176260	KCNA1, AEMK, EA1	Potassium voltage-gated channel, shaker-related subfamily, member 1	KCNA1	3736	ENSG00000111262	close to VWF	Episodic ataxia/myokymia syndrome, 160120 (3), Autosomal dominant	Kcna1 (MGI:96654)
chr12	5043918	5046787	12p13	12p13.32	176267	KCNA5, ATFB7	Potassium voltage-gated channel, shaker-related subfamily, member 5	KCNA5	3741	ENSG00000130037		Atrial fibrillation, familial, 7, 612240 (3), Autosomal dominant	Kcna5 (MGI:96662)
chr12	5432113	5495298	12p13	12p13.31	162660	NTF3	Neurotrophin-3	NTF3	4908	ENSG00000185652			Ntf3 (MGI:97380)
chr12	5560240	5948789	12p13	12p13.31	610109	ANO2, TMEM16B, C12orf3	Anoctamin 2	ANO2	57101	ENSG00000047617			Ano2 (MGI:2387214)
chr12	5948873	6124674	12p13.3	12p13.31	613160	VWF, F8VWF	Coagulation factor VIII VWF (von Willebrand factor)	VWF	7450	ENSG00000110799	pseudogene on chr. 22	von Willebrand disease, type 1, 193400 (3), Autosomal dominant; von Willebrand disease, types 2A, 2B, 2M, and 2N, 613554 (3), Autosomal recessive, Autosomal dominant; von Willibrand disease, type 3, 277480 (3), Autosomal recessive	Vwf (MGI:98941)
chr12	6199706	6238270	12p13	12p13.31	143030	CD9, MIC3	CD9 antigen (p24)	CD9	928	ENSG00000010278			Cd9 (MGI:88348)
chr12	6310435	6328505	12p13.31	12p13.31	611743	PLEKHG6, MYOGEF	Pleckstrin homology domain-containing protein, family G, member 6	PLEKHG6	55200	ENSG00000008323			Plekhg6 (MGI:2682298)
chr12	6328756	6342116	12p13.2	12p13.31	191190	TNFRSF1A, TNFR1, TNFAR, FPF, MS5	Tumor necrosis factor receptor superfamily, member 1A	TNFRSF1A	7132	ENSG00000067182		{Multiple sclerosis, susceptibility to, 5}, 614810 (3); Periodic fever, familial, 142680 (3), Autosomal dominant	Tnfrsf1a (MGI:1314884)
chr12	6346842	6377356	12p13	12p13.31	600228	SCNN1A, BESC2	Sodium channel, nonvoltage-gated 1, alpha	SCNN1A	6337	ENSG00000111319		Bronchiectasis with or without elevated sweat chloride 2, 613021 (3), Autosomal dominant; Pseudohypoaldosteronism, type I, 264350 (3), Autosomal recessive	Scnn1a (MGI:101782)
chr12	6375367	6391570	12p13	12p13.31	600979	LTBR, TNFCR	Lymphotoxin-beta receptor (tumor necrosis factor C receptor)	LTBR	4055	ENSG00000111321	tightly linked to TNFR1 in mouse		Ltbr (MGI:104875)
chr12	6444866	6451717	12p13	12p13.31	186711	CD27, TNFRSF7, S152. LPFS2	CD27 antigen	CD27	939	ENSG00000139193		Lymphoproliferative syndrome 2, 615122 (3), Autosomal recessive	Cd27 (MGI:88326)
chr12	6451655	6472005	12p13.3	12p13.31	607081	TAPBPR	TAP-binding protein-related protein	TAPBPL	55080	ENSG00000139192			Tapbpl (MGI:2384853)
chr12	6462236	6470898	12p13.31	12p13.31	185880	VAMP1, SYB1, SPAX1	Vesicle-associated membrane protein-1 (synaptobrevin-1)	VAMP1	6843	ENSG00000139190		Spastic ataxia 1, autosomal dominant, 108600 (3), Autosomal dominant	Vamp1 (MGI:1313276)
chr12	6492149	6493304	12p13.3-p13.1	12p13.31	611855	MRPL51, MRP64	Mitochondrial ribosomal protein L51	MRPL51	51258	ENSG00000111639			Mrpl51 (MGI:1913743)
chr12	6494131	6531965	12p13.31	12p13.31	615638	NCAPD2, CNAP1, KIAA0159	Non-SMC condensin I complex subunit D2	NCAPD2	9918	ENSG00000010292			Ncapd2 (MGI:1915548)
chr12	6510221	6510550	12p13.31	12p13.31	615639	SCARNA10	Small cajal body-specific RNA 10	SCARNA10	692148		in intron 4 of NCAPD2		
chr12	6534516	6538374	12p13.31-p13.1	12p13.31	138400	GAPDH, GAPD	Glyceraldehyde-3-phosphate dehydrogenase	GAPDH	2597	ENSG00000111640	pseudogene on Xp21-q11		Gapdh,Gapdh-ps15 (MGI:5434255,MGI:95640)
chr12	6539527	6556096	12p13.31	12p13.31	610495	IFFO1	Intermediate filament family orphan 1	IFFO1	25900	ENSG00000010295			Iffo1 (MGI:2444516)
chr12	6556869	6568331	12p13	12p13.31	164031	NOL1	Nucleolar protein 1, 120kD	NOP2	4839	ENSG00000111641			Nop2 (MGI:107891)
chr12	6570081	6607438	12p13	12p13.31	603277	CHD4, SIHIWES	Chromodomain helicase DNA-binding protein-4	CHD4	1108	ENSG00000111642		Sifrim-Hitz-Weiss syndrome, 617159 (3), Autosomal dominant	Chd4 (MGI:1344380)
chr12	6618834	6636130	12p13	12p13.31	606926	LPAR5, GPR92, GPR93, LPA5	Lysophosphatidic acid receptor 5	LPAR5	57121	ENSG00000184574			Lpar5 (MGI:2685918)
chr12	6650537	6663142	12p13.31	12p13.31	608524	ING4	Inhibitor of growth-4	ING4	51147	ENSG00000111653			Ing4 (MGI:107307)
chr12	6666476	6689571	12p12	12p13.31	609951	ZNF384, CIZ, CAGH1, NMP4	Zinc finger protein 384	ZNF384	171017	ENSG00000126746			Zfp384 (MGI:2443203)
chr12	6689704	6700842	12p13.31	12p13.31	616065	PIANP, PANP, LEDA1	PILR-alpha-associated neural protein	PIANP	196500	ENSG00000139200			Pianp (MGI:2441908)
chr12	6723983	6731874	12p13.31	12p13.31	616009	COPS7A, CSN7	COP9 signalosome, subunit 7A	COPS7A	50813	ENSG00000111652			Cops7a (MGI:1349400)
chr12	6747991	6753469	12p13	12p13.31	601401	MLF2	Myeloid leukemia factor-2	MLF2	8079	ENSG00000089693			Mlf2 (MGI:1353554)
chr12	6766316	6770951	12p13.31	12p13.31	168440	PTMS	Parathymosin	PTMS	5763	ENSG00000159335	previously assigned to 17q12-q22		
chr12	6772482	6778454	12p13.32	12p13.31	153337	LAG3	Lymphocyte activation gene-3	LAG3	3902	ENSG00000089692			Lag3 (MGI:106588)
chr12	6789471	6820809	12p13.31	12p13.31	186940	CD4	CD4 antigen (p55)	CD4	920	ENSG00000010610	CD = \'cluster of differentiation\' = nomenclature of leukocyte differentiation antigens	OKT4 epitope deficiency, 613949 (3)	Cd4 (MGI:88335)
chr12	6828372	6839853	12p13	12p13.31	610342	P3H3, LEPREL2	Prolyl 3-hydroxylase 3	P3H3	10536	ENSG00000110811			P3h3 (MGI:1315208)
chr12	6840853	6847394	12p13	12p13.31	139130	GNB3, CSNB1H	Guanine nucleotide-binding protein, beta polypeptide-3	GNB3	2784	ENSG00000111664		{Hypertension, essential, susceptibility to}, 145500 (3), Multifactorial; Night blindness, congenital stationary, type 1H, 617024 (3), Autosomal recessive	Gnb3 (MGI:95785)
chr12	6852120	6866631	12p13	12p13.31	601447	USP5, ISOT	Ubiquitin-specific protease-5 (ubiquitin isopeptidase T)	USP5	8078	ENSG00000111667			Usp5 (MGI:1347343)
chr12	6866833	6870945	12p13	12p13.31	190450	TPI1, TPID	Triosephosphate isomerase-1	TPI1	7167	ENSG00000111669		Hemolytic anemia due to triosephosphate isomerase deficiency, 615512 (3), Autosomal recessive	Tpi1 (MGI:98797)
chr12	6870934	6873356	12p13.31	12p13.31	611658	SPSB2, SSB2	SPRY domain- and SOCS box-containing 2	SPSB2	84727	ENSG00000111671			Spsb2 (MGI:1315199)
chr12	6914449	6923695	12p13	12p13.31	131360	ENO2	Enolase-2, gamma, neuronal	ENO2	2026	ENSG00000111674			Eno2 (MGI:95394)
chr12	6924462	6942320	12p13.31	12p13.31	607462	ATN1, DRPLA, HRS, NOD	Atrophin 1	ATN1	1822	ENSG00000111676		Dentatorubro-pallidoluysian atrophy, 125370 (3), Autosomal dominant	Atn1 (MGI:104725)
chr12	6943437	6946002	12p13	12p13.31	615140	C12orf57, C10, TEMTYS	Chromosome 12 open reading frame 57	C12orf57	113246	ENSG00000111678		Temtamy syndrome, 218340 (3), Autosomal recessive	Grcc10 (MGI:1315201)
chr12	6943815	6943877	12p13.31	12p13.31	617876	RNU7-1, RNU7	RNA, U7 small nuclear, 1	RNU7-1	100147744				
chr12	6946576	6961315	12p13	12p13.31	176883	PTPN6	Protein tyrosine phosphatase, nonreceptor-type, 6	PTPN6	5777	ENSG00000111679			Ptpn6 (MGI:96055)
chr12	6963698	6963765	12p13.31	12p13.31	612092	MIR200C, MIRN200C	Micro RNA 200C	MIR200C	406985				
chr12	6964096	6964190	12p13.31	12p13.31	612093	MIR141, MIRN141	Micro RNA 141	MIR141	406933				
chr12	6965351	6970752	12p13	12p13.31	610704	PHB2, REA	Prohibitin 2	PHB2	11331	ENSG00000215021			Phb2 (MGI:102520)
chr12	6967336	6967605	12p13.31	12p13.31	615642	SCARNA12	Small Cajal body-specific RNA 12	SCARNA12	677777				
chr12	6970780	6997427	12p13	12p13.31	611531	EMG1, NEP1, C2F, BWCNS	Essential for mitotic growth 1, S. cerevisiae, homolog of	EMG1	10436	ENSG00000126749		Bowen-Conradi syndrome, 211180 (3), Autosomal recessive	Emg1 (MGI:1315195)
chr12	6976184	7018537	12p13.31	12p13.31	611950	LPCAT3, MBOAT5, NESSY	Lysophosphatidylcholine acyltransferase 3	LPCAT3	10162	ENSG00000111684			Lpcat3 (MGI:1315211)
chr12	7060660	7071031	12p13	12p13.31	120580	C1S, EDSPD2	Complement component-1, s subcomponent	C1S	716	ENSG00000182326		C1s deficiency, 613783 (3); Ehlers-Danlos syndrome, periodontal type, 2, 617174 (3), Autosomal dominant	C1s2,C1s1 (MGI:1355312,MGI:3644269)
chr12	7080208	7092606	12p13	12p13.31	613785	C1R, EDSPD1	Complement component-1, r subcomponent	C1R	715	ENSG00000159403		Ehlers-Danlos syndrome, periodontal type, 1, 130080 (3), Autosomal dominant	C1rb,C1ra (MGI:3779804,MGI:1355313)
chr12	7094549	7109277	12p13.31	12p13.31	608974	C1RL, CLSPA, C1RLP	Complement component C1r-like protein	C1RL	51279	ENSG00000139178			C1rl (MGI:2660692)
chr12	7119105	7130271	12p13.31	12p13.31	611866	RBP5, CRBP3	Retinol-binding protein 5	RBP5	83758	ENSG00000139194			
chr12	7130370	7158944	12p13	12p13.31	611324	CLSTN3, KIAA0726	Calsyntenin 3	CLSTN3	9746	ENSG00000139182			Clstn3 (MGI:2178323)
chr12	7188684	7218573	12p13.3	12p13.31	600414	PEX5, PXR1, PTS1R, PBD2A, PBD2B, RCDP5	Peroxisome biogenesis factor 5	PEX5	5830	ENSG00000139197		Peroxisome biogenesis disorder 2A (Zellweger), 214110 (3), Autosomal recessive; Peroxisome biogenesis disorder 2B, 202370 (3), Autosomal recessive; Rhizomelic chondrodysplasia punctata, type 5, 616716 (3), Autosomal recessive	Pex5 (MGI:1098808)
chr12	7304331	7328372	12p13.31	12p13.31	614360	ACSM4	Acyl-CoA synthetase medium-chain family, member 4	ACSM4	341392	ENSG00000215009			Acsm4 (MGI:2681844)
chr12	7320509	7444184	12p13.3	12p13.31	606079	CD164L1, CD163B, M160	CD164 antigen-like 1	CD163L1	283316	ENSG00000177675			
chr12	7470810	7503817	12p13.3	12p13.31	605545	CD163	CD163 antigen (hemoglobin scavenger receptor)	CD163	9332	ENSG00000177575			Cd163 (MGI:2135946)
chr12	7649399	7670598	12p13.1	12p13.31	600130	APOBEC1, BEDP	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1	APOBEC1	339	ENSG00000111701			Apobec1 (MGI:103298)
chr12	7689781	7695792	12p13.1	12p13.31	606522	GDF3, KFS3, MCOPCB6, MCOP7	Growth differentiation factor 3	GDF3	9573	ENSG00000184344		Klippel-Feil syndrome 3, autosomal dominant, 613702 (3); Microphthalmia with coloboma 6, 613703 (3), Autosomal dominant; Microphthalmia, isolated 7, 613704 (3), Autosomal dominant	Gdf3 (MGI:95686)
chr12	7711453	7717558	12p13.31	12p13.31	608408	DPPA3	Developmental pluripotency-associated gene 3	DPPA3	359787	ENSG00000187569			
chr12	7729244	7751599	12p13.2-p12.3	12p13.31	606677	CLEC4C, CLECSF11, DLEC, BDCA2	C-type lectin domain family 4, member C	CLEC4C	170482	ENSG00000198178			Clec4b1 (MGI:1917060)
chr12	7789395	7796060	12p13.31	12p13.31	607937	NANOG	Homeobox transcription factor NANOG	NANOG	79923	ENSG00000111704			Nanog (MGI:1919200)
chr12	7812511	7891195	12p13.3	12p13.31	611039	SLC2A14, GLUT14	Solute carrier family 2 (facilitated glucose transporter), member 14	SLC2A14	144195	ENSG00000173262			
chr12	7919227	7936295	12p13.3	12p13.31	138170	SLC2A3, GLUT3	Solute carrier family 2 (facilitated glucose transporter), member 3	SLC2A3	6515	ENSG00000059804	pseudogene SLC2A3P on 5q34		Slc2a3 (MGI:95757)
chr12	8056843	8066470	12p13.31	12p13.31	605246	C3AR1, C3AR	Complement component 3a receptor 1	C3AR1	719	ENSG00000171860			C3ar1 (MGI:1097680)
chr12	8082210	8097776	12p13.31	12p13.31	611623	NECAP1, EIEE21	NECAP endocytosis-associated protein 1	NECAP1	25977	ENSG00000089818	mutation identified in 1 EIEE21 family	?Epileptic encephalopathy, early infantile, 21, 615833 (3), Autosomal recessive	Necap1 (MGI:1914852)
chr12	8102901	8138606	12p13	12p13.31	605306	CLEC4A, CLECSF6, DCIR, DDB27	C-type lectin domain family 4, member A	CLEC4A	50856	ENSG00000111729			Clec4a2 (MGI:1349412)
chr12	8221259	8227617	12p13.31	12p13.31	613041	FAM90A1	Family with sequence similarity 90, member A1	FAM90A1	55138	ENSG00000171847	other family members on chr. 8		Fam90a1b (MGI:1921682)
chr12	8455994	8478329	12p13.31-p31.2	12p13.31	613579	CLEC6A, CLEC4N	C-type lectin domain family 6, member A	CLEC6A	93978	ENSG00000205846			Clec4n (MGI:1861231)
chr12	8513491	8522365	12p13	12p13.31	609964	CLEC4D, CLECSF8, CLEC6	C-type lectin domain family 4, member D	CLEC4D	338339	ENSG00000166527			Clec4d (MGI:1298389)
chr12	8533304	8541326	12p13	12p13.31	609962	CLEC4E, MINCLE	C-type lectin domain family 4, member E	CLEC4E	26253	ENSG00000166523			Clec4e (MGI:1861232)
chr12	8602165	8612969	12p13	12p13.31	605257	AICDA, AID, HIGM2	Activation-induced cytidine deaminase	AICDA	57379	ENSG00000111732		Immunodeficiency with hyper-IgM, type 2, 605258 (3), Autosomal recessive	Aicda (MGI:1342279)
chr12	8645942	8662887	12p13.1-p12.3	12p13.31	601103	MFAP5, MAGP2, AAT9	Microfibril-associated protein 5	MFAP5	8076	ENSG00000197614		Aortic aneurysm, familial thoracic 9, 616166 (3), Autosomal dominant	Mfap5 (MGI:1354387)
chr12	8681676	8783097	12p13.31	12p13.31	614054	RIMKLB, NAAGS	Ribosomal modification protein RimK-like family, member B	RIMKLB	57494	ENSG00000166532			Rimklb (MGI:1918325)
chr12	8822471	8887201	12p13.31	12p13.31	610627	A2ML1	Alpha-2-macroglobulin-like 1	A2ML1	144568	ENSG00000166535			
chr12	8914663	8941466	12p13.31	12p13.31	602978	PHC1, EDR1, HPH1, RAE28, MCPH11	Polyhomeotic-like 1	PHC1	1911	ENSG00000111752	mutations identified in 1 family	?Microcephaly 11, primary, autosomal recessive, 615414 (3), Autosomal recessive	Phc1 (MGI:103248)
chr12	8940360	8949760	12p13	12p13.31	154540	M6PR	Mannose-6-phosphate receptor, cation-dependent	M6PR	4074	ENSG00000003056			M6pr (MGI:96904)
chr12	8950043	9215656	12p13.31	12p13.31	604874	KLRG1, MAFA, MAFAL	Killer cell lectin-like receptor, subfamily G, member 1	KLRG1	10219	ENSG00000139187			Klrg1 (MGI:1355294)
chr12	9067707	9116228	12p13.3-p12.3	12p13.31	103950	A2M , A2MD	Alpha-2-macroglobulin	A2M	2	ENSG00000175899	cluster of genes	Alpha-2-macroglobulin deficiency, 614036 (1), Autosomal dominant; {Alzheimer disease, susceptibility to}, 104300 (3), Autosomal dominant	A2m (MGI:2449119)
chr12	9140729	9208369	12p13-p12.2	12p13.31	176420	PZP	Pregnancy zone protein	PZP	5858	ENSG00000126838			
chr12	9417690	9448171	12p13	12p13.31	601151	DDX12, CHLR2	DEAD/H box-12	DDX12P	440081				
chr12	9595273	9607900	12p13-p12	12p13.31	602890	KLRB1, NKRP1A	Killer cell lectin-like receptor, subfamily B, member 1	KLRB1	3820	ENSG00000111796			Klrb1b,Klrb1c,Klrb1a (MGI:107538,MGI:107539,MGI:107540)
chr12	9669707	9699554	12p13	12p13.31	605659	CLEC2D, LLT1	C-type lectin domain family 2, member D	CLEC2D	29121	ENSG00000069493			
chr12	9715859	9733434	12p13.31	12p13.31	607467	CLECL1, DCAL1	C-type lectin-like 1	CLECL1	160365	ENSG00000184293			
chr12	9752485	9760900	12p13-p12	12p13.31	107273	CD69	CD69 antigen (p60, early T-cell activation antigen)	CD69	969	ENSG00000110848			Cd69 (MGI:88343)
chr12	9827302	9845004	12p13.2-p12.3	12p13.31	605029	KLRF1	Killer cell lectin-like receptor, subfamily F, member 1	KLRF1	51348	ENSG00000150045			
chr12	9852368	9869858	12p13-p12	12p13.31	603242	CLEC2B, CLECSF2, AICL	C-type lectin domain family 2, member B	CLEC2B	9976	ENSG00000110852			
chr12	9882732	9932429	12p13.31	12p13.31	612087	CLEC2A	C-type lectin domain family 2, member A	CLEC2A	387836	ENSG00000188393			Clec2f (MGI:3522133)
chr12	9951315	9995208	12p13	12p13.31	612088	CLEC12A, MICL	C-type lectin domain family 12, member A	CLEC12A	160364	ENSG00000172322			Clec12a (MGI:3040968)
chr12	9986118	10001893	12p13	12p13.3-p13.2	606783	CLEC2B, CLEC2	C-type lectin domain family 1, member B	CLEC1B	51266	ENSG00000165682			Clec1b (MGI:1913287)
chr12	10000000	27600000	12p13.2-p11.23		610143	DFNB62	Deafness, autosomal recessive 62	DFNB62	692220		between D12S358 and D12S1042	Deafness, autosomal recessive 62, 610143 (2), Autosomal recessive	
chr12	10000000	113900000	12p13.2-q24.1		601458	IBD2	Inflammatory bowel disease 2	IBD2	3378		mainly ulcerative colitis	{Inflammatory bowel disease 2}, 601458 (2)	
chr12	10000000	12600000	12p13.2		168710	PCS	Parotid proline-rich salivary protein Pc				linked to PRB2		
chr12	10000000	12600000	12p13.2		613967	TAS2R45, T2R45	Taste receptor, type 2, member 45	TAS2R45	259291	ENSG00000255374			
chr12	10006137	10018799	12p13.2	12p13.2	617573	CLEC12B	C-type lectin domain family 12, member B	CLEC12B	387837	ENSG00000256660			Clec12b (MGI:1918433)
chr12	10030676	10066029	12p13.31	12p13.2	612252	CLEC9A, DNGR1	C-type lectin domain family 9, member A	CLEC9A	283420	ENSG00000197992			Clec9a (MGI:2444608)
chr12	10069503	10099064	12p13	12p13.2	606782	CLEC1A, CLEC1	C-type lectin domain family 1, member A	CLEC1A	51267	ENSG00000150048			Clec1a (MGI:2444151)
chr12	10116776	10130268	12p13.2-p12.3	12p13.2	606264	CLEC7A, CLECSF12, DECTIN1, CANDF4	C-type lectin domain family 7, member A	CLEC7A	64581	ENSG00000172243	in natural killer gene complex	{Aspergillosis, susceptibility to}, 614079 (3); Candidiasis, familial, 4, autosomal recessive, 613108 (3), Autosomal recessive	Clec7a (MGI:1861431)
chr12	10158299	10172190	12p13-p12	12p13.2	602601	OLR1, LOX1	Low density lipoprotein, oxidized, receptor 1	OLR1	4973	ENSG00000173391		{Myocardial infarction, susceptibility to}, 608446 (3)	Olr1 (MGI:1261434)
chr12	10212845	10223127	12p12.3	12p13.2	607420	GABARAPL1, GEC1	GABA-A receptor-associated protein-like protein 1	GABARAPL1	23710	ENSG00000139112			Gabarapl1 (MGI:1914980)
chr12	10238382	10329606	12p13.2-p12.3	12p13.2	602894	KLRD1, CD94	Killer cell lectin-like receptor, subfamily D, member 1	KLRD1	3824	ENSG00000134539			Klrd1 (MGI:1196275)
chr12	10372352	10390053	12p13.2-p12.3	12p13.2	611817	KLRK1, NKG2D	Kill cell lectin-like receptor, subfamily K, member 1	KLRK1	22914	ENSG00000213809			
chr12	10407383	10409756	12p13.2-p12.3	12p13.2	602893	KLRC4, NKG2F, D12S2489E	Killer cell lectin-like receptor, subfamily C, member 4	KLRC4	8302	ENSG00000183542			
chr12	10412314	10420594	12p13.2-p12.3	12p13.2	602892	KLRC3, NKG2E	Killer cell lectin-like receptor, subfamily C, member 3	KLRC3	3823	ENSG00000205810			
chr12	10430598	10435992	12p13.2-p12.3	12p13.2	602891	KLRC2, NKG2C	Killer cell lectin-like receptor, subfamily C, member 2	KLRC2	3822	ENSG00000205809			
chr12	10441672	10454684	12p13.2-p12.3	12p13.2	161555	KLRC1, NKG2, NKG2A	Killer cell lectin-like receptor, subfamily C, member 1	KLRC1	3821	ENSG00000134545	family of at least 3 genes on 12		Klrc1 (MGI:1336161)
chr12	10588477	10599834	12p13-p12	12p13.2	604274	KLRA1, LY49L	Killer cell lectin-like receptor, subfamily A, member 1	KLRA1P	10748		?functional		
chr12	10618922	10674317	12p13.2	12p13.2	611433	STYK1, NOK	Serine/threonine/tyrosine kinase 1	STYK1	55359	ENSG00000060140			Styk1 (MGI:2141396)
chr12	10699076	10723441	12p13.1	12p13.2	603437	CSDA, DBPA	Cold-shock domain protein A	YBX3	8531	ENSG00000060138			Ybx3 (MGI:2137670)
chr12	10801531	10802626	12p13	12p13.2	604793	TRB4, T2R7	Taste receptor, family B, member 4	TAS2R7	50837	ENSG00000121377			Tas2r130 (MGI:2681278)
chr12	10806050	10806979	12p13	12p13.2	604794	TRB5, T2R8	Taste receptor, family B, member 5	TAS2R8	50836	ENSG00000121314			
chr12	10809093	10810167	12p13	12p13.2	604795	TRB6, T2R9	Taste receptor, family B, member 6	TAS2R9	50835	ENSG00000121381			
chr12	10825345	10826268	12p13	12p13.2	604791	TRB2, T2R10	Taste receptor, family B, member 2	TAS2R10	50839	ENSG00000121318			Tas2r114 (MGI:2681218)
chr12	10845848	10849475	Chr.12	12p13.2	605359	PROL4, LPRP	Proline rich 4, lacrimal	PRR4	11272	ENSG00000111215			
chr12	10880960	11171622	12p13.2	12p13.2	168730	PRH1	Proline-rich protein HaeIII, subfamily-1	PRH1	5554	ENSG00000231887	Pa, Db, PIF alleles		
chr12	10907925	10909561	12p13	12p13.2	604792	TRB3, T2R13	Taste receptor, family B, member 3	TAS2R13	50838	ENSG00000212128			Tas2r121 (MGI:2681259)
chr12	10929235	10934844	12p13.2	12p13.2	168790	PRH2	Proline-rich protein HaeIII, subfamily-2	PRH2	5555	ENSG00000134551	Pr allele		
chr12	10938253	10939206	12p13	12p13.2	604790	TRB1, T2R14	Taste receptor, family B, member 1	TAS2R14	50840	ENSG00000212127			Tas2r140 (MGI:2681298)
chr12	10985912	10986911	12p13.2	12p13.2	609627	TAS2R50, T2R50, TAS2R51, T2R51	Taste receptor, type 2, member 50	TAS2R50	259296	ENSG00000212126			
chr12	10995961	10998303	12p13.2	12p13.2	613962	TAS2R20, T2R56	Taste receptor, type 2, member 20	TAS2R20	259295	ENSG00000255837			
chr12	11021618	11022619	12p13	12p13.2	613961	TAS2R19, T2R19, T2R48	Taste receptor, type 2, member 19	TAS2R19	259294	ENSG00000212124			
chr12	11030386	11031406	12p13.2	12p13.2	612669	TAS2R31, TAS2R44, T2R53	Taste receptor, type 2, member 31	TAS2R31	259290	ENSG00000256436			Tas2r136 (MGI:2681304)
chr12	11061364	11062293	12p13.2	12p13.2	612774	TAS2R46, T2R46, T2R54	Taste receptor, type 2, member 46	TAS2R46	259292	ENSG00000226761			Tas2r120 (MGI:2681256)
chr12	11091286	11092312	12p13.2	12p13.2	612668	TAS2R43, T2R52	Taste receptor, type 2, member 43	TAS2R43	259289	ENSG00000255374			
chr12	11133284	11134243	12p13.2	12p13.2	613963	TAS2R30, T2R30, T2R47	Taste receptor, type 2, member 30	TAS2R30	259293	ENSG00000256188	previously assigned to chr.1		
chr12	11185992	11186936	12p13	12p13.2	613966	TAS2R42, T2R42, T2R55	Taste receptor, type 2, member 42	TAS2R42	353164	ENSG00000186136			Tas2r131 (MGI:2681280)
chr12	11265913	11269706	12p13.2	12p13.2	168840	PRB3	Proline-rich protein BstNI, subfamily-3 (parotid salivary glycoprotein)	PRB3	5544	ENSG00000197870	G1 allele		
chr12	11307080	11310434	12p13.2	12p13.2	180990	PRB4	Proline-rich protein BstNI, subfamily-4	PRB4	5545	ENSG00000230657	Po, CON1, CON2 alleles		
chr12	11351822	11355589	12p13.2	12p13.2	180989	PRB1	Proline-rich protein BstNI, subfamily-1	PRB1	5542	ENSG00000251655			
chr12	11391539	11395563	12p13.2	12p13.2	168810	PRB2	Proline-rich protein BstNI, subfamily-2 (parotid size variant)	PRB2	653247	ENSG00000121335	Ps allele		
chr12	11649600	11895401	12p13	12p13.2	600618	ETV6, TEL, THC5	ETS variant gene-6 (TEL oncogene)	ETV6	2120	ENSG00000139083	fused to PDGFRB or AML1 in leukemia	Leukemia, acute myeloid, somatic, 601626 (3); Thrombocytopenia 5, 616216 (3), Autosomal dominant	Etv6 (MGI:109336)
chr12	12049843	12099694	12p12	12p13.2	606126	BCLG	Apoptosis regulator BCLG	BCL2L14	79370	ENSG00000121380			Bcl2l14 (MGI:1914063)
chr12	12116024	12267021	12p13.3-p11.2	12p13.2	603507	LRP6, ADCAD2, STHAG7	Low density lipoprotein receptor-related protein 6	LRP6	4040	ENSG00000070018		{Coronary artery disease, autosomal dominant, 2}, 610947 (3), Autosomal dominant; Tooth agenesis, selective, 7, 616724 (3), Autosomal dominant	Lrp6 (MGI:1298218)
chr12	12357077	12471220	12p13.2	12p13.2	616598	BORCS5, LOH12CR1, MYRLYSIN	BLOC1-related complex, subunit 5	BORCS5	118426	ENSG00000165714			Borcs5 (MGI:1915024)
chr12	12473281	12562513	12p12	12p13.2	607175	DUSP16, MKP7, KIAA1700	Dual-specificity phosphatase 16	DUSP16	80824	ENSG00000111266			Dusp16 (MGI:1917936)
chr12	12611832	12645107	12p13	12p13.1	603476	CREBL2	Cyclic AMP response element-binding protein-like 2	CREBL2	1389	ENSG00000111269			Crebl2 (MGI:1889385)
chr12	12659690	12717785	12p13.2-p12.3	12p13.1	602927	GPR19	G protein-coupled receptor-19	GPR19	2842	ENSG00000183150			Gpr19 (MGI:892973)
chr12	12717269	12722382	12p13	12p13.1	600778	CDKN1B, KIP1, CDKN4, MEN4	Cyclin-dependent kinase inhibitor 1B (p27, Kip1)	CDKN1B	1027	ENSG00000111276		Multiple endocrine neoplasia, type IV, 610755 (3), Autosomal dominant	Cdkn1b (MGI:104565)
chr12	12725916	12791465	12p13.2	12p13.1	612456	APOLD1, VERGE	Apolipoprotein L domain-containing 1	APOLD1	81575	ENSG00000178878			Apold1 (MGI:2685921)
chr12	12813345	12829980	12p13.1	12p13.1	615428	DDX47	DEAD box polypeptide 47	DDX47	51202	ENSG00000213782			Ddx47 (MGI:1915005)
chr12	12891021	12913665	12p13.1	12p13.1	604138	GPRC5A, RAI3, RAIG1	G protein-coupled receptor, family C, group 5, member A	GPRC5A	9052	ENSG00000013588			Gprc5a (MGI:1891250)
chr12	12940517	12955907	12p13.3	12p13.1	607437	GPRC5D	G protein-coupled receptor, family C, group 5, member D	GPRC5D	55507	ENSG00000111291			Gprc5d (MGI:1935037)
chr12	12974863	13000308	Chr.12	12p13.1	605826	HEBP1, HBP	Heme-binding protein 1	HEBP1	50865	ENSG00000013583			Hebp1 (MGI:1333880)
chr12	13044380	13083448	12p13.1	12p13.1	617838	FAM234B, KIAA1467	Family with sequence similarity 234, member B	FAM234B	57613	ENSG00000084444			Fam234b (MGI:1921775)
chr12	13196667	13216773	12p12.3	12p13.1	602333	EMP1, TMP	Epithelial membrane protein-1	EMP1	2012	ENSG00000134531			Emp1 (MGI:107941)
chr12	13537336	13982011	12p12	12p13.1	138252	GRIN2B, NMDAR2B, MRD6, EIEE27	Glutamate receptor, ionotropic, N-methyl D-aspartate 2B	GRIN2B	2904	ENSG00000273079		Epileptic encephalopathy, early infantile, 27, 616139 (3), Autosomal dominant; Mental retardation, autosomal dominant 6, 613970 (3), Autosomal dominant	Grin2b (MGI:95821)
chr12	14254913	14255485	12p13.1	12p13.1	139180	GNAI2P1, GNAI2L, GNAI2A	Guanine nucleotide-binding protein (G protein), alpha-inhibiting, polypeptide 2 pseudogene 1	GNAI2P1	2772				
chr12	14365631	14502934	12p13.1	12p13.1	613644	ATF7IP, AM, MCAF, MCAF1	Activating transcription factor 7-interacting protein	ATF7IP	55729	ENSG00000171681			Atf7ip (MGI:1858965)
chr12	14612631	14696624	12p12	12p12.3	601330	GUCY2C, GUC2C, DIAR6, MECIL	Guanylate cyclase 2C (heat stable enterotoxin receptor)	GUCY2C	2984	ENSG00000070019		Diarrhea 6, 614616 (3), Autosomal dominant; Meconium ileus, 614665 (3), Autosomal recessive	Gucy2c (MGI:106903)
chr12	14770719	14771130	12p13.1	12p12.3	615069	HIST4H4	Histone gene cluster 4, H4 histone	HIST4H4	121504	ENSG00000197837			Hist1h4i (MGI:2448432)
chr12	14825568	14843532	12p13-p12	12p12.3	110600	ART4, DO, DOK1	ADP-ribosyltransferase-4 (Dombrock blood group)	ART4	420	ENSG00000111339		[Blood group, Dombrock], 616060 (3)	Art4 (MGI:1202710)
chr12	14880863	14886061	12p13.1-p12.3	12p12.3	154870	MGP	Matrix Gla protein	MGP	4256	ENSG00000111341		Keutel syndrome, 245150 (3), Autosomal recessive	Mgp (MGI:96976)
chr12	14942014	14961769	12p12.3	12p12.3	602843	ARHGDIB, GDID4, D4	Rho GDP dissociation inhibitor (GDI) beta	ARHGDIB	397	ENSG00000111348			Arhgdib (MGI:101940)
chr12	14973021	14981864	12p13	12p12.3	601190	PDE6H, RCD3, ACHM6	Phosphodiesterase 6H, cGMP-specific, cone, gamma	PDE6H	5149	ENSG00000139053		Achromatopsia 6, 610024 (3), Autosomal recessive, Autosomal dominant; Retinal cone dystrophy 3, 610024 (3), Autosomal recessive, Autosomal dominant	Pde6h (MGI:1925850)
chr12	15107781	15221476	12p12	12p12.3	612664	RERG	Ras-like and estrogen-regulated growth inhibitor	RERG	85004	ENSG00000134533			Rerg (MGI:2665139)
chr12	15322256	15598330	12p13-p12	12p12.3	600579	PTPRO, GLEPP1, NPHS6	Protein tyrosine phosphatase, receptor type, O	PTPRO	5800	ENSG00000151490		Nephrotic syndrome, type 6, 614196 (3), Autosomal recessive	Ptpro (MGI:1097152)
chr12	15620140	15789575	12p12.3	12p12.3	600206	EPS8, DFNB102	Epidermal growth factor receptor pathway substrate-8	EPS8	2059	ENSG00000151491	mutation identified in 1 DFNB102 family	?Deafness, autosomal recessive 102, 615974 (3), Autosomal recessive	Eps8 (MGI:104684)
chr12	15882353	15903477	12p12.3	12p12.3	605986	STRAP, UNRIP, MAWD	Serine/threonine kinase receptor-associated protein	STRAP	11171	ENSG00000023734	previously assigned to 12q		Strap (MGI:1329037)
chr12	16347141	16377188	Chr.12	12p12.3	138330	MGST1, GST12	Microsomal glutathione S-transferase 1	MGST1	4257	ENSG00000008394	pseudogene at 12q13-q14		Mgst1 (MGI:1913850)
chr12	16548371	16610232	12p13	12p12.3	180386	LMO3, RBTNL2, RHOM3	LIM domain only 3 (rhombotin-like 2)	LMO3	55885	ENSG00000048540	expressed mainly in brain		
chr12	16988746	16990627	12p12	12p12.3	601435	SKP1P2, SKP1B	S-phase kinase-associated protein 1 pseudogene 2 (p19B)	SKP1P2	728622				
chr12	18242945	18716860	12p12	12p12.3	609001	PIK3C2G	Phosphatidylinositol 3-kinase, class 2, gamma	PIK3C2G	5288	ENSG00000139144			Pik3c2g (MGI:1203730)
chr12	18645528	18738058	12p12.3	12p12.3	608075	PLCZ1, SPGF17	Phospholipase C, zeta-1	PLCZ1	89869	ENSG00000139151	mutation identified in 1 SPGF17 family	?Spermatogenic failure 17, 617214 (3), Autosomal recessive	Plcz1 (MGI:2150308)
chr12	18738110	18739187	12p12	12p12.3	608722	CAPZA3, CAPPA3	Capping protein, actin, alpha-3	CAPZA3	93661	ENSG00000177938			Capza3 (MGI:106221)
chr12	19129679	19376399	12p12	12p12.3	607770	PEPP2, KIAA1686	Phosphatidylinositol 3-phosphate-binding PH domain protein 2	PLEKHA5	54477	ENSG00000052126			Plekha5 (MGI:1923802)
chr12	19800000	26300000	12p12.2-p12.1		608742	HYT4	Hypertension, essential, susceptibility to, 4		444980			{Hypertension, essential, susceptibility to, 4}, 145500 (2), Multifactorial	
chr12	20369244	20688578	12p12.2	12p12.2	123805	PDE3A, HTNB	Phosphodiesterase 3A, cGMP-inhibited	PDE3A	5139	ENSG00000172572		Hypertension and brachydactyly syndrome, 112410 (3), Autosomal dominant	Pde3a (MGI:1860764)
chr12	20681799	20753385	12p12	12p12.2	613389	SLCO1C1, OATPF, OATP14, SLC21A14	Solute carrier organic anion transporter family, member 1C1	SLCO1C1	53919	ENSG00000139155			Slco1c1 (MGI:1889679)
chr12	20810703	20916910	12p12.2	12p12.2	605495	SLCO1B3, OATP8, OATP1B3, SLC21A8, HBLRR	Solute carrier organic anion transporter family, member 1B3	SLCO1B3	28234	ENSG00000111700	HBLRR digenic with SLCO1B1	Hyperbilirubinemia, Rotor type, digenic, 237450 (3), Digenic recessive	Slco1b2 (MGI:1351899)
chr12	21131193	21239795	12p12	12p12.1	604843	SLCO1B1, LST1, OATP2, OATPC, OATP1B1, HBLRR	Solute carrier organic anion transporter family, member 1B1	SLCO1B1	10599	ENSG00000134538	HBLRR digenic with SLCO1B3	Hyperbilirubinemia, Rotor type, digenic, 237450 (3), Digenic recessive	
chr12	21264599	21403662	12p12	12p12.1	602883	SLC21A3, OATP	Solute carrier family 21 (organic anion transporter), member 3	SLCO1A2	6579	ENSG00000084453			Slco1a5 (MGI:1351865)
chr12	21354959	21379979	12p12.3-p12.1	12p12.1	147940	IAPP	Islet amyloid polypeptide (diabetes-associated peptide; amylin)	IAPP	3375	ENSG00000121351			Iapp (MGI:96382)
chr12	21437603	21471251	12p12.1	12p12.1	617220	PYROXD1, MFM8	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1	PYROXD1	79912	ENSG00000121350		Myopathy, myofibrillar, 8, 617258 (3), Autosomal recessive	Pyroxd1 (MGI:2676395)
chr12	21468909	21501668	12p12-p11	12p12.1	600537	RECQL, RECQL1	RecQ helicase-like (DNA helicase, RecQ-like 1)	RECQL	5965	ENSG00000004700			Recql (MGI:103021)
chr12	21501175	21518402	12p12.1	12p12.1	615078	GOLT1B, GOT1B, GCT2	Golgi transport 1B	GOLT1B	51026	ENSG00000111711			Golt1b (MGI:1914214)
chr12	21531526	21604857	12p12.2	12p12.1	138571	GYS2	Glycogen synthase-2, liver	GYS2	2998	ENSG00000111713		Glycogen storage disease 0, liver, 240600 (3), Autosomal recessive	Gys2 (MGI:2385254)
chr12	21635341	21657970	12p12.2-p12.1	12p12.1	150100	LDHB, LDHBD	Lactate dehydrogenase B	LDHB	3945	ENSG00000111716		[Lactate dehydrogenase-B deficiency], 614128 (3)	Ldhb (MGI:96763)
chr12	21764954	21775592	12p11.23	12p12.1	600935	KCNJ8	Potassium inwardly-rectifying channel, subfamily J, member 8	KCNJ8	3764	ENSG00000121361			Kcnj8 (MGI:1100508)
chr12	21797388	21941862	12p12.1	12p12.1	601439	ABCC9, SUR2, CMD1O, ATFB12, CANTU	ATP-binding cassette, subfamily C, member 9 (sulfonylurea receptor 2)	ABCC9	10060	ENSG00000069431		Atrial fibrillation, familial, 12, 614050 (3), Autosomal dominant; Cardiomyopathy, dilated, 1O, 608569 (3); Hypertrichotic osteochondrodysplasia, 239850 (3), Autosomal dominant	Abcc9 (MGI:1352630)
chr12	22046173	22065673	12p12.1	12p12.1	603316	CMAS	Cytidine monophosphate N-acetylneuraminic acid synthetase	CMAS	55907	ENSG00000111726			Cmas (MGI:1337124)
chr12	22193390	22334713	12p12.1-p11.2	12p12.1	601123	SIAT8	Sialyltransferase-8 (alpha-N-acetylneuraminate: alpha-2,8-sialyltransferase, GD3 synthase)	ST8SIA1	6489	ENSG00000111728			St8sia1 (MGI:106011)
chr12	22625141	22690673	12p12.1-p11.2	12p12.1	609858	ETNK1, EKI1	Ethanolamine kinase 1	ETNK1	55500	ENSG00000139163			Etnk1 (MGI:1922570)
chr12	23529498	24562700	12p12.1	12p12.1	604975	SOX5, LAMSHF	SRY-box 5	SOX5	6660	ENSG00000134532	some LAMSHF patients have 12p12 deletions	Lamb-Shaffer syndrome, 616803 (3), Autosomal dominant	Sox5 (MGI:98367)
chr12	24810023	24949458	12p12	12p12.1	113520	BCAT1, BCT1	Branched chain aminotransferase-1, cytosolic	BCAT1	586	ENSG00000060982		?Hyperleucinemia-isoleucinemia or hypervalinemia (1)	Bcat1 (MGI:104861)
chr12	24917701	24918383	12p12.1-p11.2	12p12.1	609860	DADR	DAD1-related gene	DAD1P1	56286				
chr12	25052100	25108334	12p12.1	12p12.1	602003	LRMP, JAW1	Lymphoid-restricted membrane protein	LRMP	4033	ENSG00000118308			Lrmp (MGI:108424)
chr12	25107056	25195161	12p12.1	12p12.1	616906	CASC1, LAS1, PPP1R54	Cancer susceptibility candidate 1	CASC1	55259	ENSG00000118307			Casc1 (MGI:2444480)
chr12	25204788	25251002	12p12.1	12p12.1	190070	KRAS, KRAS2, RASK2, NS, CFC2, RALD	Kirsten rat sarcoma-2 viral (v-Ki-ras2) oncogene homolog	KRAS	3845	ENSG00000133703	pseudogene KRAS1P on 6p12-p11	Arteriovenous malformation of the brain, somatic, 108010 (3); Bladder cancer, somatic, 109800 (3); Breast cancer, somatic, 114480 (3); Cardiofaciocutaneous syndrome 2, 615278 (3); Gastric cancer, somatic, 137215 (3); Leukemia, acute myeloid, 601626 (3), Autosomal dominant; Lung cancer, somatic, 211980 (3); Noonan syndrome 3, 609942 (3), Autosomal dominant; Pancreatic carcinoma, somatic, 260350 (3); RAS-associated autoimmune leukoproliferative disorder, 614470 (3), Autosomal dominant; Schimmelpenning-Feuerstein-Mims syndrome, somatic mosaic, 163200 (3)	Kras (MGI:96680)
chr12	25476081	25648603	12p12.1	12p12.1	617254	LMNTD1, IFLTD1, LMNARS1, PAS1C1	Lamin tail domain-containing protein 1	LMNTD1	160492	ENSG00000152936			Lmntd1 (MGI:1921321)
chr12	25958231	26079891	12p12.1	12p12.1	608231	RASSF8, C12orf2	RAS association domain family, member 8	RASSF8	11228	ENSG00000123094			Rassf8 (MGI:1918573)
chr12	26120025	26125069	12p12.1-p11.23	12p12.1	606200	BHLHE41, BHLHB3, DEC2, SHARP1	Basic helix-loop-helix domain-containing protein, member E41	BHLHE41	79365	ENSG00000123095		[Short sleeper], 612975 (3), Autosomal dominant	
chr12	26121950	26234776	12p11.2	12p12.1	601599	SSPN, KRAG	Sarcospan (Kirsten-ras associated gene)	SSPN	8082	ENSG00000123096			Sspn (MGI:1353511)
chr12	26300000	51100000	12p11.23-q13.12		602096	AD5	Alzheimer disease, familial, type 5	AD5	8081			Alzheimer disease-5, 602096 (2), Autosomal dominant	
chr12	26300000	54500000	12p11.2-q13.1		615022	ARCI7	Ichthyosis, congenital, autosomal recessive 7		101202686		between D12S345 and D12S390	Ichthyosis, congenital, autosomal recessive 7, 615022 (2), Autosomal recessive	
chr12	26300000	67300000	12p11.2-q14		606257	STQTL3	Stature quantitative trait locus 3		282549		max lod at D12S398 and D12S10990	{Stature QTL 3}, 606257 (2)	
chr12	26300000	57700000	12p11-q13		615390	VUR7	Vesicoureteral reflux 7		102095631		max lod at D12S1048	Vesicoureteral reflux 7, 615390 (2)	
chr12	26335336	26833197	12p11	12p11.23	600144	ITPR2, ANHD	Inositol 1,4,5-triphosphate receptor, type 2	ITPR2	3709	ENSG00000123104	mutation has been identified in 1 ANHD family	?Anhidrosis, isolated, with normal sweat glands, 106190 (3), Autosomal recessive	Itpr2 (MGI:99418)
chr12	26905170	26938337	12p11.23	12p11.23	615079	ASUN, MAT89BB, GCT1	Asunder, spermatogenesis regulator	INTS13	55726	ENSG00000064102			Ints13 (MGI:1918427)
chr12	26966523	27014426	12q11-q12	12p11.23	605181	TM7SF3	Transmembrane 7 superfamily, member 3	TM7SF3	51768	ENSG00000064115			Tm7sf3 (MGI:1914873)
chr12	27022521	27030672	12p11.23	12p11.23	603800	MED21, SURB7, SRB7	Mediator complex subunit 21	MED21	9412	ENSG00000152944			Med21 (MGI:1347064)
chr12	27244144	27325958	12p12.3	12p11.23	615836	STK38L, NDR2, KIAA0965	Serine/threonine protein kinase 38-like protein	STK38L	23012	ENSG00000211455			Stk38l (MGI:1922250)
chr12	27332853	27425812	12p11.23	12p11.23	614517	ARNTL2, BMAL2, CLIF	Aryl hydrocarbon receptor nuclear translocator-like protein 2	ARNTL2	56938	ENSG00000029153			Arntl2 (MGI:2684845)
chr12	27696518	27697595	12p11.22	12p11.22	610848	REP15	Rab15 effector protein	REP15	387849	ENSG00000174236			Rep15 (MGI:1913782)
chr12	27710772	27756303	12q21.1-q21.3	12p11.22	611995	MRPS35, MRPS28	Mitochondrial ribosomal protein S35	MRPS35	60488	ENSG00000061794	3 pseudogenes		Mrps35 (MGI:2385255)
chr12	27958083	27972863	12p12.1-p11.2	12p11.22	168470	PTHLH, BDE2	Parathyroid hormone-like hormone	PTHLH	5744	ENSG00000087494		Brachydactyly, type E2, 613382 (3), Autosomal dominant; Humoral hypercalcemia of malignancy (1)	Pthlh (MGI:97800)
chr12	28190426	28550165	12p11.22	12p11.22	617366	CCDC91	Coiled-coil domain-containing protein 91	CCDC91	55297	ENSG00000123106			Ccdc91 (MGI:1914265)
chr12	29149002	29335616	12p11.23	12p11.22	616156	FAR2, MLSTD1	Fatty acyl CoA reductase 2	FAR2	55711	ENSG00000064763			Far2 (MGI:2687035)
chr12	29336543	29381209	12p11.22	12p11.22	612236	ERGIC2, CDA14, PTX1	Endoplasmic reticulum-golgi intermediate compartment protein 2	ERGIC2	51290	ENSG00000087502			Ergic2 (MGI:1914706)
chr12	29500812	29784758	12p11.22	12p11.22	615855	TMTC1	Transmembrane and tetratricopeptide repeat domains-containing protein 1	TMTC1	83857	ENSG00000133687			Tmtc1 (MGI:3039590)
chr12	30628980	30695994	12p11.2	12p11.21	605600	IPO8, RANBP8	Importin 8	IPO8	10526	ENSG00000133704			Ipo8 (MGI:2444611)
chr12	30709551	30754992	12p11.21	12p11.21	610375	CAPRIN2, C1QDC1, EEG1, KIAA1873	Caprin family, member 2	CAPRIN2	65981	ENSG00000110888			Caprin2 (MGI:2448541)
chr12	31073844	31104798	12p11	12p11.21	601150	DDX11, CHLR1, KRG2	DEAD/H box-11 (CHL1-related helicase gene-1)	DDX11	1663	ENSG00000013573		Warsaw breakage syndrome, 613398 (3), Autosomal recessive	Ddx11 (MGI:2443590)
chr12	31280583	31326224	12p11	12p11.21	615027	SINHCAF, FAM60A	SIN3-HDAC complex associated factor	SINHCAF	58516	ENSG00000139146			Fam60a (MGI:1929091)
chr12	31382222	31591017	12p11.21	12p11.21	617279	DENND5B	DENN domain-containing protein 5B	DENND5B	160518	ENSG00000170456			Dennd5b (MGI:2444273)
chr12	31647159	31673113	12p11.21	12p11.21	615256	ETFBKMT, METTL20, C12orf72	Electron transfer flavoprotein beta-subunit lysine methyltransferase	ETFBKMT	254013	ENSG00000139160			Etfbkmt (MGI:2443575)
chr12	31791184	31792240	12p11.21	12p11.21	616134	H3F3C	H3 histone, family 3C	H3F3C	440093	ENSG00000188375			Gm12657 (MGI:3651714)
chr12	32106772	32383636	12p11.2-p11.1	12p11.21	602204	BICD1	Bicaudal-D, Drosophila, homolog of, 1	BICD1	636	ENSG00000151746	second homolog on 9q		Bicd1 (MGI:1101760)
chr12	32399522	32646049	12p11.2	12p11.21	611104	FGD4, FRABIN, CMT4H	FYVE, RhoGEF, and PH domain-containing protein 4	FGD4	121512	ENSG00000139132		Charcot-Marie-Tooth disease, type 4H, 609311 (3), Autosomal recessive	Fgd4 (MGI:2183747)
chr12	32679199	32745649	12p11.21	12p11.21	603850	DNM1L, DRP1, DVLP, DYMPLE, EMPF1, OPA5	Dynamin 1-like	DNM1L	10059	ENSG00000087470		Encephalopathy, lethal, due to defective mitochondrial peroxisomal fission 1, 614388 (3), Autosomal recessive, Autosomal dominant; Optic atrophy 5, 610708 (3), Autosomal dominant	Dnm1l (MGI:1921256)
chr12	32725246	32756457	12p11.21	12p11.21	610957	YARS2, TYRRS, MLASA2	Tyrosyl-tRNA synthetase 2	YARS2	51067	ENSG00000139131		Myopathy, lactic acidosis, and sideroblastic anemia 2, 613561 (3), Autosomal recessive	Yars2 (MGI:1917370)
chr12	32790745	32896845	12p11	12p11.21	602861	PKP2, ARVD9	Plakophilin-2	PKP2	5318	ENSG00000057294	pseudogene on 12p13	Arrhythmogenic right ventricular dysplasia 9, 609040 (3), Autosomal dominant	Pkp2 (MGI:1914701)
chr12	34022280	34035295	12p11.1	12p11.1	603313	ALG10, KCR1	Alg10, S. cerevisiae, homolog of	ALG10	84920	ENSG00000139133		{Long QT syndrome, acquired, reduced susceptibility to}, 613688 (3), Autosomal dominant	Alg10b (MGI:2146159)
chr12	35500000	133275309	12q		179010	IHPS1, IHPS	Pyloric stenosis, infantile hypertrophic 1					Pyloric stenosis, infantile hypertrophic 1, 179010 (2), Autosomal dominant, Multifactorial	
chr12	37800000	92200000	12q12-q21		102300	RLS1	Restless legs syndrome, susceptibility to, 1		192142		between D12S1044 and D12S78	{Restless legs syndrome 1}, 102300 (2), Autosomal dominant	
chr12	39293227	39443389	12q12	12q12	608283	KIF21A, KIAA1708, FEOM1, CFEOM1, CFEOM3B	Kinesin family member 21A	KIF21A	55605	ENSG00000139116		Fibrosis of extraocular muscles, congenital, 1, 135700 (3), Autosomal dominant; Fibrosis of extraocular muscles, congenital, 3B, 135700 (3), Autosomal dominant	Kif21a (MGI:109188)
chr12	39530964	39651332	12q11-q12	12q12	601081	ABCD2, ALDR, ALDL1	ATP-binding cassette, subfamily D, member 2	ABCD2	225	ENSG00000173208			Abcd2 (MGI:1349467)
chr12	39755020	40106084	12q12	12q12	611036	SLC2A13, HMIT	Solute carrier family 2 (facilitated glucose transporter), member 13	SLC2A13	114134	ENSG00000151229			Slc2a13 (MGI:2146030)
chr12	40224889	40369284	12q12	12q12	609007	LRRK2, PARK8	Leucine-rich repeat kinase 2 (dardarin)	LRRK2	120892	ENSG00000188906		{Parkinson disease 8}, 607060 (3), Autosomal dominant	Lrrk2 (MGI:1913975)
chr12	40393393	40570756	12q12	12q12	612170	MUC19	Mucin 19, oligomeric	MUC19	283463				
chr12	40692428	41072411	12q11-q12	12q12	600016	CNTN1, MYPCN	Contactin 1	CNTN1	1272	ENSG00000018236	mutation identified in 1 MYPCN family	?Myopathy, congenital, Compton-North, 612540 (3), Autosomal recessive	Cntn1 (MGI:105980)
chr12	41188447	41574589	12q12	12q12	609730	PDZRN4	PDZ domain-containing ring finger protein 4	PDZRN4	29951	ENSG00000165966			Pdzrn4 (MGI:3056996)
chr12	42081844	42144870	12q12	12q12	613321	GXYLT1, GLT8D3	Glucoside xylosyltransferase 1	GXYLT1	283464	ENSG00000151233			Gxylt1 (MGI:2684933)
chr12	42157103	42238372	12q12	12q12	607534	YAF2	YY1-associated factor 2	YAF2	10138	ENSG00000015153			
chr12	42312085	42326129	12q12	12q12	610750	ZCRB1, MADP1	Zinc finger CCHC domain- and RNA-binding motif-containing protein 1	ZCRB1	85437	ENSG00000139168	possible pseudogenes on chr16, X, and 6		Zcrb1 (MGI:1914447)
chr12	42326125	42448620	12q12	12q12	608150	PPHLN1	Periphilin 1	PPHLN1	51535	ENSG00000134283			Pphln1 (MGI:1917029)
chr12	42458337	42589769	12q12	12q12	608500	PRICKLE1, RILP, EPM1B	Prickle-like 1	PRICKLE1	144165	ENSG00000139174		Epilepsy, progressive myoclonic 1B, 612437 (3), Autosomal recessive	Prickle1 (MGI:1916034)
chr12	43352842	43551970	12q11	12q12	611681	ADAMTS20	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 20	ADAMTS20	80070	ENSG00000173157			Adamts20 (MGI:2660628)
chr12	43758908	43789542	12q12	12q12	606883	IRAK4, REN64, IPD1	Interleukin 1 receptor-associated kinase 4	IRAK4	51135	ENSG00000198001		IRAK4 deficiency, 607676 (3); Invasive pneumococcal disease, recurrent isolated, 1, 610799 (3)	Irak4 (MGI:2182474)
chr12	43793722	43806374	12q12	12q12	610932	TWF1, PTK9	Twinfilin, Drosophila, homolog of, 1	TWF1	5756	ENSG00000151239			Twf1 (MGI:1100520)
chr12	44508274	44921847	12q13.11-q13.12	12q12	602320	NELL2	Nel-like 2	NELL2	4753	ENSG00000184613			Nell2 (MGI:1858510)
chr12	45215986	45440403	12q12	12q12	608663	ANO6, TMEM16F, SCTS, BDPLT7	Anoctamin 6	ANO6	196527	ENSG00000177119		Scott syndrome, 262890 (3), Autosomal recessive	Ano6 (MGI:2145890)
chr12	45729705	45908039	12q12	12q12	609539	ARID2, BAF200, KIAA1557, CSS6	AT-rich interaction domain-containing protein 2	ARID2	196528	ENSG00000189079		Coffin-Siris syndrome 6, 617808 (3), Autosomal dominant	Arid2 (MGI:1924294)
chr12	45919130	45992039	12q12-q13.11	12q12	603668	SCAF11, SFRS2IP, SIP1, CASP11, SRRP129	SR-related C-terminal domain-associated factor 11	SCAF11	9169	ENSG00000139218	previously assigned to 21q22.3		Scaf11 (MGI:1919443)
chr12	46000000	57700000	12q13		613061	BCC4	Basal cell carcinoma, susceptibility to, 4		100307121		associated with rs11170164	{Basal cell carcinoma, susceptibility to, 4}, 613061 (2)	
chr12	46000000	57700000	12q13		616182	CMTS	Chronic mountain sickness, susceptibility to		105180377			{Chronic mountain sickness, susceptibility to}, 616182 (2)	
chr12	46000000	67300000	12q13-q14		607841	DFNA48	Deafness, autosomal dominant 48					Deafness, autosomal dominant 48, 607841 (2), Autosomal dominant	
chr12	46000000	92200000	12q13-q21		600808	ENUR2	Enuresis, nocturnal, 2	ENUR2	2032			Enuresis, nocturnal, 2, 600808 (2), Autosomal dominant	
chr12	46000000	57700000	12q13		167960	HPV18I2	Human papillomavirus type 18 integration site-2	HPV18I2	3261		on 8 near MYC in HeLa		
chr12	46000000	71100000	12q13.11-q15		614346	MRT25	Mental retardation, autosomal recessive 25	MRT25	100852403		between rs4760658 and rs1882033	Mental retardation, autosomal recessive 25, 614346 (2), Autosomal recessive	
chr12	46000000	67300000	12q13-q14		604681	PABPL2	Poly(A)-binding protein-like 2				?pseudogenes on 3q and 13q		
chr12	46000000	57700000	12q13		184100	SPDT	Spondyloepiphyseal dysplasia tarda, autosomal dominant		103875461			Spondyloepiphyseal dysplasia tarda, autosomal dominant, 184100 (2), Autosomal dominant	
chr12	46183054	46269424	12q13.11	12q13.11	608490	SLC38A1	Solute carrier family 38 (amino acid transporter), member 1	SLC38A1	81539	ENSG00000111371			Slc38a1 (MGI:2145895)
chr12	46358187	46372861	12q13.11	12q13.11	605180	SLC38A2, ATA2, KIAA1382	Solute carrier family 38, member 2	SLC38A2	54407	ENSG00000134294			Slc38a2 (MGI:1915010)
chr12	46764760	46832421	12q13	12q13.11	608065	SLC38A4, NAT3, ATA3	Solute carrier family 38 (amino acid transporter), member 4	SLC38A4	55089	ENSG00000139209			Slc38a4 (MGI:1916604)
chr12	47075706	47080825	12q13.11	12q13.11	615690	AMIGO2, ALI1	Adhesion molecule with Ig-like domain 2	AMIGO2	347902	ENSG00000139211			Amigo2 (MGI:2145995)
chr12	47661931	47706060	12q13.11	12q13.11	611477	RPAP3	RNA polymerase II-associated protein 3	RPAP3	79657	ENSG00000005175			Rpap3 (MGI:1277218)
chr12	47709733	47725571	12q13.1	12q13.11	606720	ENDOU, PP11	Endonuclease polyU-specific	ENDOU	8909	ENSG00000111405			Endou (MGI:97746)
chr12	47753618	47782752	12q13	12q13.11	612187	HRG1	Heme-responsive gene 1	SLC48A1	55652	ENSG00000211584			Slc48a1 (MGI:1914989)
chr12	47734669	47759105	Chr.12	12q13.11	606057	EPAC	cAMP-regulated guanine nucleotide exchange factor I	RAPGEF3	10411	ENSG00000079337			Rapgef3 (MGI:2441741)
chr12	47782709	47820611	Chr.12	12q13.11	606542	HDAC7A, HDAC7	Histone deacetylase 7A	HDAC7	51564	ENSG00000061273			Hdac7 (MGI:1891835)
chr12	47841536	47905030	12q12-q14	12q13.11	601769	VDR	Vitamin D (1,25-dihydroxyvitamin D3) receptor	VDR	7421	ENSG00000111424		?Osteoporosis, involutional, 166710 (1), Autosomal dominant; Rickets, vitamin D-resistant, type IIA, 277440 (3), Autosomal recessive	Vdr (MGI:103076)
chr12	47972964	48006211	12q13.11-q13.2	12q13.11	120140	COL2A1	Collagen II, alpha-1 polypeptide	COL2A1	1280	ENSG00000139219		Achondrogenesis, type II or hypochondrogenesis, 200610 (3), Autosomal dominant; Avascular necrosis of the femoral head, 608805 (3), Autosomal dominant; Czech dysplasia, 609162 (3), Autosomal dominant; Epiphyseal dysplasia, multiple, with myopia and deafness, 132450 (3), Autosomal dominant; Kniest dysplasia, 156550 (3), Autosomal dominant; Legg-Calve-Perthes disease, 150600 (3), Autosomal dominant; Osteoarthritis with mild chondrodysplasia, 604864 (3), Autosomal dominant; Platyspondylic skeletal dysplasia, Torrance type, 151210 (3), Autosomal dominant; SED congenita, 183900 (3), Autosomal dominant; SMED Strudwick type, 184250 (3), Autosomal dominant; Spondyloepiphyseal dysplasia, Stanescu type, 616583 (3), Autosomal dominant; Spondyloperipheral dysplasia, 271700 (3), Autosomal dominant; Stickler sydrome, type I, nonsyndromic ocular, 609508 (3), Autosomal dominant; Stickler syndrome, type I, 108300 (3), Autosomal dominant; Vitreoretinopathy with phalangeal epiphyseal dysplasia (3)	Col2a1 (MGI:88452)
chr12	48042892	48106307	12q13.1	12q13.11	612157	SENP1	Sentrin-specific protease family, member 1	SENP1	29843	ENSG00000079387			Senp1 (MGI:2445054)
chr12	48105252	48146403	12q13.3	12q13.11	610681	PFKM, GSD7	Phosphofructokinase, muscle type	PFKM	5213	ENSG00000152556	incorrectly assigned to chr.1	Glycogen storage disease VII, 232800 (3), Autosomal recessive	Pfkm (MGI:97548)
chr12	48147787	48157594	12q13	12q13.11	615053	ASB8	Ankyrin repeat- and SOCS box-containing protein 8	ASB8	140461	ENSG00000177981			Asb8 (MGI:1925791)
chr12	48334379	48351413	12q13.11	12q13.11	613906	ZNF641	Zinc finger protein 641	ZNF641	121274	ENSG00000167528			Zfp641 (MGI:2442788)
chr12	48472664	48473059	12q13.11	12q13.11	606878	ANP32D, PP32R2	Acidic leucine-rich nuclear phosphoprotein 32 family, member D	ANP32D	23519	ENSG00000139223			
chr12	48567683	48571882	12q13	12q13.11	149750	LALBA	Lactalbumin, alpha	LALBA	3906	ENSG00000167531			Lalba (MGI:96742)
chr12	48653210	48682251	12q13.11	12q13.11	615488	KANSL2, NSL2, C12orf41	KAT8 regulatory NSL complex, subunit 2	KANSL2	54934	ENSG00000139620			Kansl2 (MGI:1916862)
chr12	48654381	48654517	12q13.11	12q13.11	615487	SNORA2C, SNORA34, ACA34, MIR1291	Small nucleolar RNA, H/ACA box, 34	SNORA2C	677815		MIR1291 in intron of SNORA34		
chr12	48688457	48716997	12q11-q13.3	12q13.11-q13.12	143055	CCNT1, CCNT	Cyclin T1	CCNT1	904	ENSG00000129315			Ccnt1 (MGI:1328363)
chr12	48766190	48789095	12q12-q13	12q13.12	600294	ADCY6, LCCS8	Adenylate cyclase-6	ADCY6	112	ENSG00000174233	mutation identified in 1 LCCS8 family	?Lethal congenital contracture syndrome 8, 616287 (3), Autosomal recessive	Adcy6 (MGI:87917)
chr12	48814431	48828942	12q13	12q13.12	601958	CACNB3	Calcium channel, voltage-dependent, beta 3 subunit	CACNB3	784	ENSG00000167535			Cacnb3 (MGI:103307)
chr12	48829755	48852173	12q13.12	12q13.12	612172	DDX23, PRP28	Dead box polypeptide 23	DDX23	9416	ENSG00000174243			Ddx23 (MGI:1921601)
chr12	48857132	48865869	12q13.12	12q13.12	609038	RND1, RHO6	Rho family GTPase 1	RND1	27289	ENSG00000172602			Rnd1 (MGI:2444878)
chr12	48904109	48921575	12q13.12	12q13.12	611088	CCDC65, CILD27	Coiled-coil domain-containing protein 65	CCDC65	85478	ENSG00000139537		Ciliary dyskinesia, primary, 27, 615504 (3), Autosomal recessive	Ccdc65 (MGI:2146001)
chr12	48921958	48925546	12q13	12q13.12	610571	FKBP11, FKBP19	FK506-binding protein 11	FKBP11	51303	ENSG00000134285			Fkbp11 (MGI:1913370)
chr12	48930251	48957525	12q13	12q13.12	103190	ARF3	ADP-ribosylation factor-3	ARF3	377	ENSG00000134287			Arf3 (MGI:99432)
chr12	48965339	48979586	12q13	12q13.12	601906	WNT10B, SHFM6, STHAG8	Wingless-type MMTV integration site family, member 10B	WNT10B	7480	ENSG00000169884		Split-hand/foot malformation 6, 225300 (3), Autosomal recessive; Tooth agenesis, selective, 8, 617073 (3), Autosomal dominant	Wnt10b (MGI:108061)
chr12	48978452	48982612	12q12-q13	12q13.12	164820	WNT1, INT1, OI15, BMND16	Wingless-type MMTV integration site family, member 1 (oncogene INT1)	WNT1	7471	ENSG00000125084		Osteogenesis imperfecta, type XV, 615220 (3), Autosomal recessive; {Osteoporosis, early-onset, susceptibility to, autosomal dominant}, 615221 (3)	Wnt1 (MGI:98953)
chr12	48995148	49001772	12q13.1	12q13.12	610588	DDN, KIAA0749	Dendrin	DDN	23109	ENSG00000181418			Ddn (MGI:108101)
chr12	49002271	49018974	12q13.1	12q13.12	602742	PRKAG1	Protein kinase, AMP-activated, noncatalytic, gamma-1	PRKAG1	5571	ENSG00000181929			Prkag1 (MGI:108411)
chr12	49018974	49060883	12q13.12	12q13.12	602113	KMT2D, MLL2, ALR, KABUK1	Lysine (K)-specific methyltransferase 2D	KMT2D	8085	ENSG00000167548		Kabuki syndrome 1, 147920 (3), Autosomal dominant	Kmt2d (MGI:2682319)
chr12	49086655	49094818	12q13.1	12q13.12	605423	DHH, SRXY7, GDXYM	Desert hedgehog	DHH	50846	ENSG00000139549		46XY partial gonadal dysgenesis, with minifascicular neuropathy, 607080 (3); 46XY sex reversal 7, 233420 (3), Autosomal recessive	Dhh (MGI:94891)
chr12	49096550	49110899	12q13.12	12q13.12	610007	LMBR1L, LIMR, KIAA1174	Limb region 1 homolog-like	LMBR1L	55716	ENSG00000139636			Lmbr1l (MGI:1289247)
chr12	49127781	49131520	12q13.12	12q13.12	602530	TUBA1B	Tubulin, alpha-1B	TUBA1B	10376	ENSG00000123416			Tuba1b (MGI:107804)
chr12	49184794	49189323	12q12-q14	12q13.12	602529	TUBA1A, TUBA3, LIS3	Tubulin, alpha-1A	TUBA1A	7846	ENSG00000167552		Lissencephaly 3, 611603 (3), Autosomal dominant	Tuba1a (MGI:98869)
chr12	49295125	49298697	12q12-q13	12q13.12	170710	PRPH	Peripherin	PRPH	5630	ENSG00000135406		{Amyotrophic lateral sclerosis, susceptibility to}, 105400 (3), Autosomal recessive, Autosomal dominant	Prph (MGI:97774)
chr12	49332408	49337194	12q13	12q13.12	615229	C1QL4, CTRP11	Complement component 1, q subcomponent-like 4	C1QL4	338761	ENSG00000186897			C1ql4 (MGI:3579909)
chr12	49366904	49527440	12q13.2	12q13.12	611667	SPATS2, SPATA10, P59SCR, SCR59	Spermatogenesis-associated serine-rich protein 2	SPATS2	65244	ENSG00000123352			Spats2 (MGI:1919822)
chr12	49538540	49558311	12q13	12q13.12	604527	KCNH3, BEC1	Potassium voltage-gated channel, subfamily H (eag-related), member 3	KCNH3	23416	ENSG00000135519			Kcnh3 (MGI:1341723)
chr12	49558293	49568232	12q13.12	12q13.12	609504	MCRS1, MSP58, MCRS2	Microspherule protein 1 (microspherule protein 2, included)	MCRS1	10445	ENSG00000187778			Mcrs1 (MGI:1858420)
chr12	49636498	49707413	12q13	12q13.12	616288	FMNL3, FRL2	Formin-like 3	FMNL3	91010	ENSG00000161791			Fmnl3 (MGI:109569)
chr12	49741509	49764933	12q13.12	12q13.12	600748	TMBIM6, TEGT	Transmembrane BAX inhibitor motif-containing protein 6	TMBIM6	7009	ENSG00000139644			Tmbim6 (MGI:99682)
chr12	49791138	49828749	12q13.12	12q13.12	615104	NCKAP5L, KIAA1602	NCK-associated protein 5-like	NCKAP5L	57701	ENSG00000167566			Nckap5l (MGI:3609653)
chr12	49866895	49903976	12q13	12q13.12	604306	FAIM2, LFG, NMP35	FAS apoptotic inhibitory molecule 2	FAIM2	23017	ENSG00000135472			Faim2 (MGI:1919643)
chr12	49950740	49958880	12q13	12q13.12	107777	AQP2	Aquaporin-2 (collecting duct)	AQP2	359	ENSG00000167580		Diabetes insipidus, nephrogenic, 125800 (3), Autosomal recessive, Autosomal dominant	Aqp2 (MGI:1096865)
chr12	49961495	49965681	12q13	12q13.12	600442	AQP5, PPKB	Aquaporin-5	AQP5	362	ENSG00000161798		Palmoplantar keratoderma, Bothnian type, 600231 (3), Autosomal dominant	Aqp5 (MGI:106215)
chr12	49972836	49977138	12q13	12q13.12	601383	AQP6, AQP2L	Aquaporin-6, kidney specific	AQP6	363	ENSG00000086159			Aqp6 (MGI:1341204)
chr12	49989161	50033205	12q13.12	12q13.12	604980	RCGAP1, MGCRACGAP, CYK4	GTPase-activating protein, Rac, 1	RACGAP1	29127	ENSG00000161800			Racgap1 (MGI:1349423)
chr12	50057636	50083621	12q12	12q13.12	602866	ACCN2	Cation channel, amiloride-sensitive, neuronal, 2	ASIC1	41	ENSG00000110881			Asic1 (MGI:1194915)
chr12	50085199	50100710	12q13-q14	12q13.12	601735	SMARCD1, BAF60A	SW1/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1	SMARCD1	6602	ENSG00000066117			Smarcd1 (MGI:1933623)
chr12	50103818	50111319	12q12-q13	12q13.12	138420	GPD1, HTGTI	Glycerol-3-phosphate dehydrogenase, soluble	GPD1	2819	ENSG00000167588		Hypertriglyceridemia, transient infantile, 614480 (3), Autosomal recessive	Gpd1 (MGI:95679)
chr12	50111980	50120456	12q13.12	12q13.12	614478	COX14, C12orf62	Cytochrome c oxidase assembly protein COX14	COX14	84987	ENSG00000178449	mutation identified in 1 Cox4 deficient family	?Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Cox14 (MGI:1913629)
chr12	50129305	50167532	12q13.12	12q13.12	615335	CERS5, LASS5, TRH4	Ceramide synthase 5	CERS5	91012	ENSG00000139624			Cers5 (MGI:1919199)
chr12	50175779	50283569	12q13	12q13.12	608364	LIMA1, EPLIN, SREBP3	LIM domain and actin-binding protein 1	LIMA1	51474	ENSG00000050405			Lima1 (MGI:1920992)
chr12	50504984	50748666	12q13.12	12q13.12	611379	DIP2B, KIAA1463	Disco-interacting protein 2, Drosophila, homolog of, B	DIP2B	57609	ENSG00000066084		Mental retardation, FRA12A type, 136630 (3), Autosomal dominant	Dip2b (MGI:2145977)
chr12	50763681	50821161	12q13	12q13.12	123803	ATF1, TREB36	Activating transcription factor 1	ATF1	466	ENSG00000123268	fused with EWS in soft tissue clear cell sarcoma, with FUS in angiomatoid fibrous histiocytoma		Atf1,Atf1-ps (MGI:3037720,MGI:1298366)
chr12	50952262	51028334	12q13	12q13.12	600523	SLC11A2, NRAMP2, DCT1, DMT1, AHMIO1	Solute carrier family 11 (proton-coupled divalent metal ion transporter) member 2	SLC11A2	4891	ENSG00000110911		Anemia, hypochromic microcytic, with iron overload 1, 206100 (3), Autosomal recessive	Slc11a2 (MGI:1345279)
chr12	51093755	51173142	12q13	12q13.12-q13.13	189889	TFCP2	Transcription factor CP2, alpha globin	TFCP2	7024	ENSG00000135457			Tfcp2 (MGI:98509)
chr12	51281037	51324679	12q13.13	12q13.13	605936	BIN2	Bridging integrator 2	BIN2	51411	ENSG00000110934	previously mapped to 4q22.1		Bin2 (MGI:3611448)
chr12	51328442	51346678	12q13	12q13.13	130120	CELA1, ELA1	Chymotrypsin-like elastase family, member 1	CELA1	1990	ENSG00000139610	on proximal 12p		Cela1 (MGI:95314)
chr12	51351869	51391954	12q13	12q13.13	605148	GALNT6, GalNAcT6	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 6	GALNT6	11226	ENSG00000139629			Galnt6 (MGI:1891640)
chr12	51391316	51515762	Chr.12	12q13.13	605024	SLC4A8, NBC3	Solute carrier family 4 (sodium bicarbonate cotransporter), member 8	SLC4A8	9498	ENSG00000050438			Slc4a8 (MGI:1928745)
chr12	51589957	51812863	12q13	12q13.13	600702	SCN8A, CIAT, EIEE13, BFIS5	Sodium channel, voltage gated, type VIII, alpha polypeptide	SCN8A	6334	ENSG00000196876	mutation identified in 1 CIAT family	?Cognitive impairment with or without cerebellar ataxia, 614306 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 13, 614558 (3), Autosomal dominant; Seizures, benign familial infantile, 5, 617080 (3), Autosomal dominant	Scn8a (MGI:103169)
chr12	51906912	51923360	12q11-q14	12q13.13	601284	ACVRL1, ACVRLK1, ALK1, HHT2	Activin A receptor, type II-like kinase 1	ACVRL1	94	ENSG00000139567		Telangiectasia, hereditary hemorrhagic, type 2, 600376 (3), Autosomal dominant	Acvrl1 (MGI:1338946)
chr12	51951666	51997078	12q13	12q13.13	601300	ACVR1B, ACVRLK4, ALK4	Activin A receptor, type IB	ACVR1B	91	ENSG00000135503		Pancreatic cancer, somatic (3)	Acvr1b (MGI:1338944)
chr12	52006944	52015888	12q13.13	12q13.13	612027	GRASP, TAMALIN	GRP1-associated scaffold protein	GRASP	160622	ENSG00000161835			Grasp (MGI:1860303)
chr12	52022831	52059506	12q13	12q13.13	139139	NR4A1, HMR, NP10, GFRP1	Nuclear receptor subfamily 4, group A, member 1	NR4A1	3164	ENSG00000123358			Nr4a1 (MGI:1352454)
chr12	52069922	52077494	12q13.13	12q13.13	615089	ATG101, C12orf44	Autophagy-related protein 101	ATG101	60673	ENSG00000123395			Atg101 (MGI:1915368)
chr12	52168995	52191999	12q13.13	12q13.13	611161	KRT80, KB20	Keratin 80	KRT80	144501	ENSG00000167767			Krt80 (MGI:1921377)
chr12	52233169	52252666	12q12-q14	12q13.13	148059	KRT7	Keratin 7	KRT7	3855	ENSG00000135480			Krt7 (MGI:96704)
chr12	52270506	52309162	12q13	12q13.13	601928	KRT86, KRTHB6, HB6	Keratin 86	KRT86	3892	ENSG00000170442		Monilethrix, 158000 (3), Autosomal dominant	Krt86 (MGI:109362)
chr12	52285912	52291514	12q13	12q13.13	602153	KRT81, KRTHB1, HB1	Keratin 81	KRT81	3887	ENSG00000205426		Monilethrix, 158000 (3), Autosomal dominant	Krt81 (MGI:1928858)
chr12	52314300	52321397	12q13	12q13.13	602765	KRT83, KRTHB3, HB3, MNLIX, EKVP5	Keratin 83	KRT83	3889	ENSG00000170523		Erythrokeratodermia variabilis et progressiva 5, 617756 (3), Autosomal recessive; Monilethrix, 158000 (3), Autosomal dominant	Krt83 (MGI:3690448)
chr12	52360005	52367524	12q13	12q13.13	602767	KRT85, KRTHB5, HB5, ECTD4	Keratin 85	KRT85	3891	ENSG00000135443		Ectodermal dysplasia 4, hair/nail type, 602032 (3), Autosomal recessive	
chr12	52377664	52386976	12q13.13	12q13.13	602766	KRT84, KRTHB4, HB4	Keratin 84	KRT84	3890	ENSG00000161849			Krt84 (MGI:96700)
chr12	52393950	52406391	12q13.13	12q13.13	601078	KRT82, KRTHB2, HB2	Keratin 82	KRT82	3888	ENSG00000161850			Krt82 (MGI:2149248)
chr12	52424069	52434325	12q13	12q13.13	609025	KRT75, K6HF, PFB	Keratin 75	KRT75	9119	ENSG00000170454		{Pseudofolliculitis barbae, susceptibility to}, 612318 (3)	Krt75 (MGI:1923500)
chr12	52446650	52452125	12q13	12q13.13	148042	KRT6B, PC4	Keratin 6B	KRT6B	3854	ENSG00000185479		Pachyonychia congenita 4, 615728 (3)	Krt6a,Krt6b (MGI:1333768,MGI:1100845)
chr12	52468515	52473784	12q13.13	12q13.13	612315	KRT6C, PPKNEFD	Keratin 6C	KRT6C	286887	ENSG00000170465		Palmoplantar keratoderma, nonepidermolytic, focal or diffuse, 615735 (3), Autosomal dominant	
chr12	52487173	52493396	12q13	12q13.13	148041	KRT6A, PC3	Keratin 6A	KRT6A	3853	ENSG00000205420		Pachyonychia congenita 3, 615726 (3)	
chr12	52514574	52520458	12q13	12q13.13	148040	KRT5, DDD1	Keratin 5	KRT5	3852	ENSG00000186081		Dowling-Degos disease 1, 179850 (3), Autosomal dominant; Epidermolysis bullosa simplex, Dowling-Meara type, 131760 (3), Autosomal dominant; Epidermolysis bullosa simplex, Koebner type, 131900 (3), Autosomal dominant; Epidermolysis bullosa simplex, Weber-Cockayne type, 131800 (3), Autosomal dominant; Epidermolysis bullosa simplex, recessive 1, 601001 (3), Autosomal recessive; Epidermolysis bullosa simplex-MCR, 609352 (3); Epidermolysis bullosa simplex-MP, 131960 (3), Autosomal dominant	Krt5 (MGI:96702)
chr12	52543908	52553146	12q13	12q13.13	608245	KRT71, K6IRS1, KRT6IRS1, HYPT13	Keratin 71	KRT71	112802	ENSG00000139648	mutation identified in 1 HYPT13 family	?Hypotrichosis 13, 615896 (3), Autosomal dominant	Krt71 (MGI:1861586)
chr12	52565818	52573824	12q13	12q13.13	608248	KRT74, K6IRS4, KRT6IRS4, HTSS2, HYPT3, ADWH	Keratin 74	KRT74	121391	ENSG00000170484	mutation identified in 1 HYPT3 family and ECTD7 family	?Ectodermal dysplasia 7, hair/nail type, 614929 (3), Autosomal recessive; ?Hypotrichosis 3, 613981 (3), Autosomal dominant; Woolly hair, autosomal dominant, 194300 (3), Autosomal dominant	
chr12	52585588	52602899	12q13	12q13.13	608246	KRT72, K6IRS2, KRT6IRS2	Keratin 72	KRT72	140807	ENSG00000170486			Krt72 (MGI:2146034)
chr12	52601812	52620132	12q13	12q13.13	608247	KRT73, K6IRS3, KRT6IRS3	Keratin 73	KRT73	319101	ENSG00000186049			Krt73 (MGI:3607712)
chr12	52644557	52652174	12q11-q13	12q13.13	600194	KRT2, KRT2A, KRT2E	Keratin 2	KRT2	3849	ENSG00000172867		Ichthyosis bullosa of Siemens, 146800 (3), Autosomal dominant	
chr12	52674735	52680406	12q13	12q13.13	139350	KRT1, EPPK, NEPPK, EHK	Keratin 1	KRT1	3848	ENSG00000167768	close to Hox-3 in mouse; class II keratin	Epidermolytic hyperkeratosis, 113800 (3), Autosomal recessive, Autosomal dominant; Ichthyosis histrix, Curth-Macklin type, 146590 (3), Autosomal dominant; Ichthyosis, cyclic, with epidermolytic hyperkeratosis, 607602 (3), Autosomal dominant; Keratosis palmoplantaris striata III, 607654 (3); Palmoplantar keratoderma, epidermolytic, 144200 (3), Autosomal dominant; Palmoplantar keratoderma, nonepidermolytic, 600962 (3), Autosomal dominant	Krt1 (MGI:96698)
chr12	52689611	52703523	12q13.13	12q13.13	611158	KRT77, K1B	Keratin 77	KRT77	374454	ENSG00000189182			Krt77 (MGI:3588209)
chr12	52768154	52777344	12q13.13	12q13.13	616671	KRT76, K76, KRT2P	Keratin 76, type II	KRT76	51350	ENSG00000185069			Krt76 (MGI:1924305)
chr12	52789684	52805734	12q13	12q13.13	148043	KRT3	Keratin 3	KRT3	3850	ENSG00000186442		Meesmann corneal dystrophy, 122100 (3), Autosomal dominant	
chr12	52806542	52814115	12q13	12q13.13	123940	KRT4, CYK4, WSN1	Keratin 4	KRT4	3851	ENSG00000170477	class II keratin	White sponge nevus 1, 193900 (3), Autosomal dominant	Krt4 (MGI:96701)
chr12	52821446	52834292	12q13.13	12q13.13	611160	KRT79,  KRT6L, K6L	Keratin 79	KRT79	338785	ENSG00000185640			Krt79 (MGI:2385030)
chr12	52837803	52848993	12q13.13	12q13.13	611159	KRT78, K5B	Keratin 78	KRT78	196374	ENSG00000170423			Krt78 (MGI:1917529)
chr12	52897186	52949865	12q13	12q13.13	148060	KRT8	Keratin 8	KRT8	3856	ENSG00000170421		Cirrhosis, cryptogenic, 215600 (3), Autosomal recessive; {Cirrhosis, noncryptogenic, susceptibility to}, 215600 (3), Autosomal recessive	Krt8 (MGI:96705)
chr12	52948870	52952900	12q13	12q13.13	148070	KRT18	Keratin 18	KRT18	3875	ENSG00000111057	contiguous to KRT8, type II heteromer partner	Cirrhosis, cryptogenic, 215600 (3), Autosomal recessive; {Cirrhosis, noncryptogenic, susceptibility to}, 215600 (3), Autosomal recessive	Krt18 (MGI:96692)
chr12	53006257	53042214	12q13.13	12q13.13	603928	EIF4B	Eukaryotic translation initiation factor 4B	EIF4B	1975	ENSG00000063046			Eif4b (MGI:95304)
chr12	53046979	53064378	12q13.13	12q13.13	607717	TNS2, TENC1, C1TEN, KIAA1075	Tensin 2	TNS2	23371	ENSG00000111077			Tns2 (MGI:2387586)
chr12	53097651	53102343	Chr.12	12q13.13	146735	IGFBP6	Insulin-like growth factor-binding protein-6	IGFBP6	3489	ENSG00000167779			Igfbp6 (MGI:96441)
chr12	53103489	53124538	12q13	12q13.13	601311	SOAT2, ACACT2	Sterol O-acyltransferase 2	SOAT2	8435	ENSG00000167780			Soat2 (MGI:1332226)
chr12	53157662	53181662	12q13.13	12q13.13	616569	CSAD, CSD, PCAP	Cysteine sulfinic acid decarboxylase	CSAD	51380	ENSG00000139631			Csad (MGI:2180098)
chr12	53191317	53207374	12q13.13	12q13.13	147559	ITGB7	Integrin, beta-7	ITGB7	3695	ENSG00000139626			Itgb7 (MGI:96616)
chr12	53210565	53232255	12q13	12q13.13	180190	RARG	Retinoic acid receptor, gamma polypeptide	RARG	5916	ENSG00000172819			Rarg (MGI:97858)
chr12	53268256	53293642	12q13	12q13.13	604143	ESPL1, ESP1	Extra spindle poles-like 1	ESPL1	9700	ENSG00000135476	prev. mapping to chr.8		Espl1 (MGI:2146156)
chr12	53295450	53299449	12q12	12q13.13	604899	PFDN5, MM1	Prefoldin 5	PFDN5	5204	ENSG00000123349			Pfdn5 (MGI:1928753)
chr12	53299685	53307180	12q13	12q13.13	611366	C12orf10, MYG1	Chromosome 12 open reading frame 10	C12orf10	60314	ENSG00000139637			Myg1 (MGI:1929864)
chr12	53307455	53321627	12q13	12q13.13	605378	AAAS, AAA	Aladin	AAAS	8086	ENSG00000094914		Achalasia-addisonianism-alacrimia syndrome, 231550 (3), Autosomal recessive	Aaas (MGI:2443767)
chr12	53326574	53344792	12q13.13	12q13.13	606633	SP7, OSX, OI12	Transcription factor Sp7	SP7	121340	ENSG00000170374	mutation identified in 1 OI12 patient	?Osteogenesis imperfecta, type XII, 613849 (3), Autosomal recessive	Sp7 (MGI:2153568)
chr12	53380194	53416445	12q13.1	12q13.13	189906	SP1	Sp1 transcription factor	SP1	6667	ENSG00000185591			Sp1 (MGI:98372)
chr12	53423854	53431671	12q13	12q13.13	600956	AMHR2, AMHR	Anti-Mullerian hormone receptor, type II	AMHR2	269	ENSG00000135409		Persistent Mullerian duct syndrome, type II, 261550 (3), Autosomal recessive	Amhr2 (MGI:105062)
chr12	53441648	53446642	12q13.13	12q13.13	610459	PRR13, TXR1	Proline-rich protein 13	PRR13	54458	ENSG00000205352			
chr12	53452101	53481161	12q13.12-q13.13	12q13.13	601210	PCBP2	Poly(rC)-binding protein-2	PCBP2	5094	ENSG00000197111			Pcbp2 (MGI:108202)
chr12	53479668	53501204	12q13	12q13.13	600447	MAP3K12, ZPK	Mitogen-activated protein kinase kinase kinase 12	MAP3K12	7786	ENSG00000139625			Map3k12 (MGI:1346881)
chr12	53500920	53506430	12p12.1-q13.1	12q13.13	605053	TARBP2	TAR RNA-binding protein 2	TARBP2	6895	ENSG00000139546	pseudogene on 8q22-qter		Tarbp2 (MGI:103027)
chr12	53507855	53626414	Chr.12	12q13.13	606371	ATF7	Activating transcription factor 7	ATF7	11016	ENSG00000170653			Atf7 (MGI:2443472)
chr12	53665159	53677545	Chr.12	12q13.13	603193	ATP5G2	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C, isoform 2	ATP5MC2	517	ENSG00000135390			Atp5g2 (MGI:1915192)
chr12	53938791	53946543	12q13	12q13.13	142976	HOXC13, HOX3G, ECTD9	Homeo box-C13	HOXC13	3229	ENSG00000123364	fused with NUP98 in AML	Ectodermal dysplasia 9, hair/nail type, 614931 (3), Autosomal recessive	Hoxc13 (MGI:99560)
chr12	53954867	53956605	12q13	12q13.13	142975	HOXC12, HOX3F	Homeo box-C12	HOXC12	3228	ENSG00000123407			Hoxc12 (MGI:96194)
chr12	53962307	53974955	12q13.13	12q13.13	611400	HOTAIR	Hox transcript antisense RNA	HOTAIR	100124700				
chr12	53973125	53976418	Chr.12	12q13.13	605559	HOXC11	Homeo box-C11	HOXC11	3227	ENSG00000123388			Hoxc11 (MGI:96193)
chr12	53985161	53990278	Chr.12	12q13.13	605560	HOXC10	Homeo box-C10	HOXC10	3226	ENSG00000180818			Hoxc10 (MGI:96192)
chr12	53991737	53991846	12q13	12q13.13	609687	MIR196A2, MIRN196A2	Micro RNA 196A2	MIR196A2	406973				
chr12	54000118	54003336	12q13	12q13.13	142971	HOXC9, HOX3B	Homeo box-C9	HOXC9	3225	ENSG00000180806			Hoxc9 (MGI:96199)
chr12	54009105	54012762	12q13	12q13.13	142970	HOXC8, HOX3A	Homeo box-C8	HOXC8	3224	ENSG00000037965			Hoxc8 (MGI:96198)
chr12	54016851	54056029	12q13	12q13.13	142974	HOXC4, HOX3E	Homeo box-C4	HOXC4	3221	ENSG00000198353			Hoxc4 (MGI:96195)
chr12	54016851	54035360	12q13	12q13.13	142973	HOXC5, HOX3D	Homeo box-C5	HOXC5	3222	ENSG00000172789			Hoxc5 (MGI:96196)
chr12	54016851	54030822	12q13	12q13.13	142972	HOXC6, HOX3C	Homeo box-C6	HOXC6	3223	ENSG00000197757			Hoxc6 (MGI:96197)
chr12	54121273	54188993	12q	12q13.13	607753	SMUG1	Single-strand-selective monofunctional uracil-DNA glycosylase 1	SMUG1	23583	ENSG00000123415			Smug1 (MGI:1918976)
chr12	54230945	54280130	12q13.13	12q13.13	604478	CBX5, HP1	Chromobox homolog 5	CBX5	23468	ENSG00000094916			Cbx5 (MGI:109372)
chr12	54280689	54287087	12q13.1	12q13.13	164017	HNRNPA1, IBMPFD3, ALS20	Heterogeneous nuclear ribonucleoprotein A1	HNRNPA1	3178	ENSG00000135486	mutation identified in 1 family with IBMPFD3	Amyotrophic lateral sclerosis 20, 615426 (3), Autosomal dominant; ?Inclusion body myopathy with early-onset Paget disease without frontotemporal dementia 3, 615424 (3), Autosomal dominant	
chr12	54292106	54301036	12q13	12q13.13	601490	NFE2	Nuclear factor, erythroid-derived 2, 45kD	NFE2	4778	ENSG00000123405			Nfe2 (MGI:97308)
chr12	54325089	54351850	12q13.13	12q13.13	615472	COPZ1, COPZ	Coatomer protein complex, subunit zeta-1	COPZ1	22818	ENSG00000111481			Copz1 (MGI:1929063)
chr12	54337215	54337313	12q13.13	12q13.13	613787	MIR148B, MIRN148B	Micro RNA 148B	MIR148B	442892				
chr12	54362444	54365223	12q13.13	12q13.13	606383	GPR84	G protein-coupled receptor 84	GPR84	53831	ENSG00000139572			Gpr84 (MGI:1934129)
chr12	54369128	54391609	12q13.13	12q13.13	609124	ZNF385A, ZNF385, RZF, HZF	Zinc finger protein 385A	ZNF385A	25946	ENSG00000161642			Zfp385a (MGI:1352495)
chr12	54395260	54419265	12q11-q13	12q13.13	135620	ITGA5, FNRA, VLA5A	Integrin, alpha-5 (fibronectin receptor, alpha subunit; very late activation protein-5, alpha subunit)	ITGA5	3678	ENSG00000161638			Itga5 (MGI:96604)
chr12	54455951	54473601	12q13.2	12q13.13	617484	GTSF1, FAM112B	Gametocyte-specific factor 1	GTSF1	121355	ENSG00000170627			Gtsf1 (MGI:1921424)
chr12	54497710	54543114	12q13.1	12q13.1-q13.2	141180	HEM1	Hematopoietic protein-1	NCKAP1L	3071	ENSG00000123338			Nckap1l (MGI:1926063)
chr12	54549392	54579238	12q13	12q13.2	171891	PDE1B1, PDES1B, PDE1B	Phosphodiesterase-1B	PDE1B	5153	ENSG00000123360			Pde1b (MGI:97523)
chr12	54579239	54588658	12q13.2	12q13.2	613246	PPP1R1A, IPP1, I1	Protein phosphatase 1, regulatory subunit 1A	PPP1R1A	5502	ENSG00000135447			Ppp1r1a (MGI:1889595)
chr12	54630838	54634878	12q13	12q13.2	607360	LACRT	Lacritin	LACRT	90070	ENSG00000135413			
chr12	54644590	54648492	12q13.1	12q13.2	606634	DCD	Dermcidin	DCD	117159	ENSG00000161634			
chr12	54854514	54858392	12q13.2	12q13.2	610857	SBEM	Small breast epithelial mucin	MUCL1	118430	ENSG00000172551			
chr12	54948018	54984745	12q13.2	12q13.2	615664	TESPA1, KIAA0748	Thymocyte-expressed positive selection-associated protein 1	TESPA1	9840	ENSG00000135426			Tespa1 (MGI:1914846)
chr12	55019944	55030016	12q13	12q13.2	611635	NEUROD4, MATH3	Neurogenic differentiation 4	NEUROD4	58158	ENSG00000123307			Neurod4 (MGI:108055)
chr12	55684567	55716036	12q13	12q13.2	600536	ITGA7	Integrin, alpha-7	ITGA7	3679	ENSG00000135424		Muscular dystrophy, congenital, due to ITGA7 deficiency, 613204 (3), Autosomal recessive	Itga7 (MGI:102700)
chr12	55716033	55719706	12q13-q14	12q13.2	601444	GCN5L1	GCN5 (general control of amino-acid synthesis, yeast, homolog)-like 1	BLOC1S1	2647	ENSG00000135441			Bloc1s1 (MGI:1195276)
chr12	55720366	55724741	12q13-q14	12q13.2	601617	RDH5	Retinol dehydrogenase-5	RDH5	5959	ENSG00000135437		Fundus albipunctatus, 136880 (3), Autosomal recessive, Autosomal dominant	Rdh5 (MGI:1201412)
chr12	55725442	55729672	12q12-q13	12q13.2	155740	CD63, MLA1	CD63 antigen (melanoma 1 antigen)	CD63	967	ENSG00000135404			Cd63 (MGI:99529)
chr12	55743277	55757193	12q13.13	12q13.2	603936	GDF11, BMP11	Growth/differentiation factor 11	GDF11	10220	ENSG00000135414			Gdf11 (MGI:1338027)
chr12	55752462	55817755	12q13	12q13.2	610049	SARNP, CIP29, HCC1, HSPC316	SAP domain-containing ribonucleoprotein	SARNP	84324	ENSG00000205323	fused with MLL in AML		Sarnp (MGI:1913368)
chr12	55818021	55821174	12q13.2	12q13.2	610074	ORMDL2	ORM1-like protein 2	ORMDL2	29095	ENSG00000123353	pseudogene on 8q22.1		Ormdl2 (MGI:1914094)
chr12	55820959	55829635	12q13.1-q13.2	12q13.2	606092	DRIP78, HDJ3	Dopamine receptor-interacting protein, 78kD	DNAJC14	85406	ENSG00000135392			Dnajc14 (MGI:1921580)
chr12	55835429	55842982	12q14	12q13.2	601807	MMP19, MMP18, CODA	Matrix metalloproteinase-19	MMP19	4327	ENSG00000123342	triplication in upstream regulatory region	Cavitary optic disc anomalies, 611543 (3), Autosomal dominant	Mmp19 (MGI:1927899)
chr12	55931090	55954022	12q13.3	12q13.2	125855	DGKA, DAGK1	Diacylglycerol kinase, alpha, 80kD	DGKA	1606	ENSG00000065357			Dgka (MGI:102952)
chr12	55954104	55966711	12q13-q14	12q13.2	155550	SILV, D12S53E, PMEL17	Silver, mouse, homolog of	PMEL	6490	ENSG00000185664			Pmel (MGI:98301)
chr12	55966768	55972788	12q13	12q13.2	116953	CDK2	Cyclin-dependent kinase 2	CDK2	1017	ENSG00000123374			Cdk2 (MGI:104772)
chr12	55973912	55996682	12q13	12q13.2	179514	RAB5B	Ras-associated protein RAB5B	RAB5B	5869	ENSG00000111540			Rab5b (MGI:105938)
chr12	55992546	56005524	Chr.12	12q13.2	606887	SUOX	Sulfite oxidase	SUOX	6821	ENSG00000139531		Sulfite oxidase deficiency, 272300 (3), Autosomal recessive	Suox (MGI:2446117)
chr12	56007646	56038434	12q13	12q13.2	606239	IKZF4, ZNFN1A4, EOS, KIAA1782	Ikaros family zinc finger 4	IKZF4	64375	ENSG00000123411			Ikzf4 (MGI:1343139)
chr12	56041854	56044696	12q	12q13.2	603701	RPS26, DBA10	Ribosomal protein S26	RPS26	6231	ENSG00000197728		Diamond-Blackfan anemia 10, 613309 (3), Autosomal dominant	Rps26 (MGI:1351628)
chr12	56080024	56103506	12q13	12q13.2	190151	ERBB3, LCCS2	Transformation gene ERBB-3	ERBB3	2065	ENSG00000065361		Lethal congenital contractural syndrome 2, 607598 (3), Autosomal recessive	Erbb3 (MGI:95411)
chr12	56104318	56113909	12q13	12q13.2	602145	PA2G4	Proliferation-associated 2G4, 38kD	PA2G4	5036	ENSG00000170515	family of genes on 7 chromosomes		Pa2g4 (MGI:894684)
chr12	56116589	56117831	12q13.2	12q13.2	613315	RPL41, HG12	Ribosomal protein L41	RPL41	6171	ENSG00000229117			
chr12	56128201	56144675	12q13.2	12q13.2	616670	ESYT1, MBC2, FAM62A	Extended synaptotagmin-like protein 1	ESYT1	23344	ENSG00000139641			Esyt1 (MGI:1344426)
chr12	56152419	56157986	12q13.13	12q13.2	609930	MYL6B, MLC1SA	Myosin, light chain 6B, alkali, smooth muscle and nonmuscle, slow	MYL6B	140465	ENSG00000196465			Myl6b (MGI:1917789)
chr12	56158260	56161581	12q13.2	12q13.2	609931	MYL6	Myosin light chain 6, alkali, smooth muscle and nonmuscle	MYL6	4637	ENSG00000092841			Myl6 (MGI:109318)
chr12	56162358	56189573	12q13-q14	12q13.2	601734	SMARCC2, BAF170	SW1/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2	SMARCC2	6601	ENSG00000139613			Smarcc2 (MGI:1915344)
chr12	56200000	57700000	12q13.3		614375	AAA4	Aortic aneurysm, familial abdominal, 4		100859927		associated with rs1466535	Aortic aneurysm, familial abdominal, 4, 614375 (2)	
chr12	56222011	56229857	12q13.3	12q13.3	612104	OBFC2B, SSB1	Oligonucleotide/oligosaccharide-binding fold-containing protein 2B	NABP2	79035	ENSG00000139579			Nabp2 (MGI:1917167)
chr12	56230035	56237849	12q13.3	12q13.3	608730	SLC39A5, MYP24	Solute carrier family 39 (zinc transporter), member 5	SLC39A5	283375	ENSG00000139540		Myopia 24, autosomal dominant, 615946 (3), Autosomal dominant	Slc39a5 (MGI:1919336)
chr12	56271698	56300390	12q13.2-q13.3	12q13.3	118950	CS	Citrate synthase, mitochondrial	CS	1431	ENSG00000062485			Cs (MGI:88529)
chr12	56309841	56316347	12q15	12q13.3	605861	CNPY4, TMEM4, MSAP	Canopy 2, zebrafish, homolog of	CNPY2	10330	ENSG00000257727			Cnpy2 (MGI:1928477)
chr12	56316222	56334052	12q13.3	12q13.3	617447	PAN2, USP52, KIAA0710	PABP-dependent poly(A) nuclease 2	PAN2	9924	ENSG00000135473			Pan2 (MGI:1918984)
chr12	56334158	56340409	12q13.2	12q13.3	605580	IL23A, SGRF, P19, IL23P19	Interleukin 23, p19 subunit	IL23A	51561	ENSG00000110944			Il23a (MGI:1932410)
chr12	56341596	56360252	12q13.2	12q13.3	600556	STAT2, IMD44	Signal transducer and activator of transcription 2	STAT2	6773	ENSG00000170581		Immunodeficiency 44, 616636 (3), Autosomal recessive	Stat2 (MGI:103039)
chr12	56360570	56362798	12q13.3	12q13.3	107760	APOF, LTIP	Apolipoprotein F	APOF	319	ENSG00000175336			Apof (MGI:104539)
chr12	56416372	56449464	12q12-q13	12q13.3	603887	TIMELESS, TIM, TIM1	Timeless, Drosophila, homolog of	TIMELESS	8914	ENSG00000111602			Timeless (MGI:1321393)
chr12	56449501	56456552	12q13	12q13.3	154050	MIP, AQP0, CTRCT15	Major intrinsic protein of lens fiber	MIP	4284	ENSG00000135517	slightly distal to AQP2	Cataract 15, multiple types, 615274 (3), Autosomal dominant	Mip (MGI:96990)
chr12	56470943	56488413	12q13	12q13.3	606365	GLS2, GA	Glutaminase, liver	GLS2	27165	ENSG00000135423			Gls2 (MGI:2143539)
chr12	56520405	56596195	12q13.3	12q13.3	602387	RBMS2, SCR3	RNA-binding motif protein, single strand interacting, 2	RBMS2	5939	ENSG00000076067			Rbms2 (MGI:1861776)
chr12	56595595	56636815	12q24.3-qter	12q13.3	605682	BAZ2A	Bromodomain adjacent to zinc finger domain, 2A	BAZ2A	11176	ENSG00000076108			Baz2a (MGI:2151152)
chr12	56638174	56646067	12p13-qter	12q13.3	102910	ATP5B, ATPSB	ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide	ATP5F1B	506	ENSG00000110955			Atp5b (MGI:107801)
chr12	56663340	56689574	12q13.3	12q13.3	607061	PTGES3, P23, CPGES	Prostaglandin E synthase 3	PTGES3	10728	ENSG00000110958			Ptges3,Ptges3-ps (MGI:1929282,MGI:3704271)
chr12	56712426	56726274	12q23-q24.1	12q13.3	601234	NACA	Nascent-polypeptide-associated complex alpha polypeptide	NACA	4666	ENSG00000196531			Naca (MGI:106095)
chr12	56731579	56752361	12q13	12q13.3	176635	PRIM1	Primase, polypeptide-1, 49kD	PRIM1	5557	ENSG00000198056			Prim1 (MGI:97757)
chr12	56752448	56787789	12q13	12q13.3	606623	HSE	3-alpha-hydroxysteroid epimerase	HSD17B6	8630	ENSG00000025423			Hsd17b6 (MGI:1351670)
chr12	56923153	56934404	12q13.3	12q13.3	609769	SDR9C7, SDRO, ARCI13	Short chain dehydrogenase/reductase family 9C member 7	SDR9C7	121214	ENSG00000170426		Ichthyosis, congenital, autosomal recessive 13, 617574 (3), Autosomal recessive	Sdr9c7 (MGI:1917311)
chr12	57009996	57016559	12q13-q21	12q13.3	162330	TAC3, NKNB, HH10	Tachykinin 3 (neuromedin K, neurokinin B)	TAC3	6866	ENSG00000166863		Hypogonadotropic hypogonadism 10 with or without anosmia, 614839 (3), Autosomal recessive	Tac2 (MGI:98476)
chr12	57028516	57050764	12q13-q15	12q13.3	601478	MYO1A	Myosin IA	MYO1A	4640	ENSG00000166866			Myo1a (MGI:107732)
chr12	57055642	57088702	12q13.3	12q13.3	616496	NEMP1, TMEM194A	Nuclear envelope integral membrane protein 1	NEMP1	23306	ENSG00000166881			Nemp1 (MGI:2446113)
chr12	57088893	57095475	12q13.3-q14.1	12q13.3	602381	NAB2	NGFIA-binding protein-2	NAB2	4665	ENSG00000166886			Nab2 (MGI:107563)
chr12	57095403	57111412	12q13	12q13.3	601512	STAT6	Signal transducer and activator of transcription-6, interleukin-4 induced	STAT6	6778	ENSG00000166888			Stat6 (MGI:103034)
chr12	57128400	57213376	12q13.1-q13.3	12q13.3	107770	LRP1, A2MR, KPA	Low density lipoprotein-related protein-1 (alpha-2-macroglobulin receptor)	LRP1	4035	ENSG00000123384	mutation identified in 1 KPA family	?Keratosis pilaris atrophicans, 604093 (3), Autosomal recessive	Lrp1 (MGI:96828)
chr12	57216794	57226448	12q13.3	12q13.3	604637	NXPH4, NPH4	Neuroexophilin 4	NXPH4	11247	ENSG00000182379			Nxph4 (MGI:1336197)
chr12	57229572	57234934	12q13	12q13.3	138450	SHMT2, GLYA	Serine hydroxymethyltransferase	SHMT2	6472	ENSG00000182199	glycine A auxotroph		Shmt2 (MGI:1277989)
chr12	57243452	57251192	12q13.3	12q13.3	615521	STAC3, NAM	SH3 and cystein-rich domains 3	STAC3	246329	ENSG00000185482		Native American myopathy, 255995 (3), Autosomal recessive	Stac3 (MGI:3606571)
chr12	57434684	57452061	12q13.1	12q13.3	601233	INHBC	Inhibin, beta C	INHBC	3626	ENSG00000175189			Inhbc (MGI:105932)
chr12	57455290	57458012	12q13.3	12q13.3	612031	INHBE	Inhibin, beta E	INHBE	83729	ENSG00000139269			Inhbe (MGI:109269)
chr12	57460134	57472450	12q13.2-q13.3	12q13.3	165220	GLI	Glioma-associated oncogene homolog (zinc finger protein)	GLI1	2735	ENSG00000111087			Gli1 (MGI:95727)
chr12	57472254	57488813	12q14	12q13.3	610576	ARHGAP9	Rho GTPase-activating protein 9	ARHGAP9	64333	ENSG00000123329			Arhgap9 (MGI:2143764)
chr12	57487952	57516654	12q13.3	12q13.3	156560	MARS, MTRNS, METRS, ILLD, CMT2U	Methioninyl-tRNA synthetase	MARS	4141	ENSG00000166986		Charcot-Marie-Tooth disease, axonal, type 2U, 616280 (3), Autosomal dominant; Interstitial lung and liver disease, 615486 (3), Autosomal recessive	Mars (MGI:1345633)
chr12	57516587	57520516	12q13.1-q13.2	12q13.3	126337	DDIT3, GADD153, CHOP10	DNA-damage-inducible transcript-3	DDIT3	1649	ENSG00000175197	fused with FUS in myxoid liposarcoma	Myxoid liposarcoma, 613488 (1)	Ddit3 (MGI:109247)
chr12	57519162	57519258	12q13.3	12q13.3	614489	MIR616	Micro RNA 616	MIR616	693201				
chr12	57530049	57547330	12q13.3	12q13.3	607376	DCTN2, DCTN50	Dynactin 2	DCTN2	10540	ENSG00000175203			Dctn2 (MGI:107733)
chr12	57549991	57586632	12q13	12q13.3	602821	KIF5A, NKHC, SPG10, NEIMY, ALS25	Kinesin family member 5A	KIF5A	3798	ENSG00000155980		{Amyotrophic lateral sclerosis, susceptibility to, 25}, 617921 (3), Autosomal dominant; Myoclonus, intractable, neonatal, 617235 (3), Autosomal dominant; Spastic paraplegia 10, autosomal dominant, 604187 (3), Autosomal dominant	Kif5a (MGI:109564)
chr12	57591158	57603427	12q13.3	12q13.3	617104	PIP4K2C, PIP5K2C	Phosphatidylinositol 5-phosphate 4-kinase, type II, gamma	PIP4K2C	79837	ENSG00000166908			Pip4k2c (MGI:2152214)
chr12	57604326	57609803	12q13.3	12q13.3	613142	DTX3	Deltex, Drosophila, homolog of, 3	DTX3	196403	ENSG00000178498			Dtx3 (MGI:2135752)
chr12	57610179	57617244	12q13.11	12q13.3	610215	ARHGEF25, GEFT	Rho guanine nucleotide exchange factor 25	ARHGEF25	115557	ENSG00000240771			Arhgef25 (MGI:1277173)
chr12	57623408	57633238	12q13.3	12q13.3	601873	B4GALNT1, GALGT, GALNACT, SPG26	Beta-1,4-N-acetylgalactosaminyltransferase 1	B4GALNT1	2583	ENSG00000135454		Spastic paraplegia 26, autosomal recessive, 609195 (3), Autosomal recessive	B4galnt1 (MGI:1342057)
chr12	57693954	57721556	12q13	12q13.3-q14.1	609677	OS9	Amplified in osteosarcoma 9	OS9	10956	ENSG00000135506			Os9 (MGI:1924301)
chr12	57700000	67300000	12q14		177700	GLC1P	Glaucoma 1, open angle, P				caused by 300kb duplication	Glaucoma 1, open angle, P, 177700 (4), Autosomal dominant	
chr12	57700000	67300000	12q14		614354	PRO2268	PRO2268 gene		55390				
chr12	57723764	57742200	12q14.1	12q14.1	605476	AGAP2, CENTG1, PIKE	ARF-GAP with GTP-binding protein-like, ankyrin repeat, and pleckstrin homology domains 2	AGAP2	116986	ENSG00000135439			Agap2 (MGI:3580016)
chr12	57744988	57748242	12q13-q14	12q14.1	181035	TSPAN31, SAS	Tetraspanin 31	TSPAN31	6302	ENSG00000135452			Tspan31 (MGI:1914375)
chr12	57747726	57752446	12q14	12q14.1	123829	CDK4, CMM3	Cyclin-dependent kinase 4	CDK4	1019	ENSG00000135446		{Melanoma, cutaneous malignant, 3}, 609048 (3), Autosomal dominant	Cdk4 (MGI:88357)
chr12	57755097	57760409	12q14.1	12q14.1	613336	MARCH9	Membrane-associated RING-CH finger protein 9	MARCH9	92979	ENSG00000139266			March9 (MGI:2446144)
chr12	57762333	57767192	12q13.1-q13.3	12q14.1	609506	CYP27B1, VDD1, PDDR	Cytochrome P450, subfamily XXVIIB, polypeptide 1	CYP27B1	1594	ENSG00000111012		Vitamin D-dependent rickets, type I, 264700 (3), Autosomal recessive	Cyp27b1 (MGI:1098274)
chr12	57768567	57772130	12q13	12q14.1	604466	METTL1	Methyltransferase-like 1	METTL1	4234	ENSG00000037897			Mettl1 (MGI:1339986)
chr12	57772599	57782540	12q14.1	12q14.1	615258	EEF1AKMT3, METTL21B, FAM119B	EEF1A lysine methyltransferase 3	EEF1AKMT3	25895	ENSG00000123427			Eef1akmt3 (MGI:3645330)
chr12	57782744	57802855	12q13-q14	12q14.1	604723	TSFM, COXPD3	Ts translation elongation factor, mitochondrial	TSFM	10102	ENSG00000123297		Combined oxidative phosphorylation deficiency 3, 610505 (3), Autosomal recessive	Tsfm (MGI:1913649)
chr12	57797375	57818703	12q14	12q14.1	613397	AVIL	Advillin	AVIL	10677	ENSG00000135407			Avil (MGI:1333798)
chr12	57824608	57824691	12q14.1	12q14.1	613057	MIR26A2, MIRN26A2	Micro RNA 26A2	MIR26A2	407016				
chr12	58872154	58920537	12q13.2	12q14.1	608870	LIRG3, LIG3	Leucine-rich repeats- and immunoglobulin-like domains-containing protein 3	LRIG3	121227	ENSG00000139263			Lrig3 (MGI:2443955)
chr12	59595933	59789854	12q13	12q14.1	603654	SLC16A7, MCT2	Solute carrier family 16 (monocarboxylic acid transporters), member 7	SLC16A7	9194	ENSG00000118596			Slc16a7 (MGI:1330284)
chr12	61708247	62260103	12q14.1	12q14.1	617496	FAM19A2, TAFA2	Family with sequence similarity 19, member A2, CC motif chemokine-like	FAM19A2	338811	ENSG00000198673			Fam19a2 (MGI:2143691)
chr12	62260339	62409720	12q14.1	12q14.1	604731	USP15	Ubiquitin-specific protease 15	USP15	9958	ENSG00000135655			Usp15 (MGI:101857)
chr12	62466816	62598955	12q14.1	12q14.1	616822	MON2, KIAA1040	Mon2, S. cerevisiae, homolog of	MON2	23041	ENSG00000061987			Mon2 (MGI:1914324)
chr12	62603685	62603768	12q14.1	12q14.1	612148	MIRLET7I, LET7I, MIRNLET7I	Micro RNA Let7i	MIRLET7I	406891				
chr12	62643981	62934884	12q14.1-q14.2	12q14.1-q14.2	616016	PPM1H, KIAA1157	Protein phosphatase, magnesium/manganese-dependent, 1H	PPM1H	57460	ENSG00000111110			Ppm1h (MGI:2442087)
chr12	62700000	64700000	12q14.2		610908	AUTS13	Autism, susceptibility to, 13		100188317		linkage with rs1445442	{Autism susceptibility 13}, 610908 (2)	
chr12	63142758	63152809	12q14-q15	12q14.2	600821	AVPR1A	Arginine vasopressin receptor-1A	AVPR1A	552	ENSG00000166148			Avpr1a (MGI:1859216)
chr12	63558912	63669200	12q14.2	12q14.2	613893	DPY19L2, SPGF9	DPY19-like 2	DPY19L2	283417	ENSG00000177990	pseudogene on 7p14.3	Spermatogenic failure 9, 613958 (3), Autosomal recessive	Dpy19l2 (MGI:2444662)
chr12	63779802	63809557	12q14.2	12q14.2	605862	RXYLT1, TMEM5, MDDGA10	Ribitol xylosyltransferase 1	RXYLT1	10329	ENSG00000118600		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 10, 615041 (3), Autosomal recessive	Tmem5 (MGI:2384919)
chr12	63843910	64147862	12q14.2	12q14.2	606523	SRGAP1, KIAA1304, NMTC2	Slit-robo GTPase-activating protein, rho, 1	SRGAP1	57522	ENSG00000196935		{Thyroid cancer, nonmedullary, 2}, 188470 (3), Autosomal dominant	Srgap1 (MGI:2152936)
chr12	64186311	64222295	12q14.2	12q14.2	617420	C12orf66	Chromosome 12 open reading frame 66	C12orf66	144577	ENSG00000174206			BC048403 (MGI:2670984)
chr12	64452059	64502118	12q14.2	12q14.2	604834	TBK1, NAK, FTDALS4, IIAE8	TANK-binding kinase 1	TBK1	29110	ENSG00000183735		{Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 8}, 617900 (3), Autosomal dominant; Frontotemporal dementia and/or amyotrophic lateral sclerosis 4, 616439 (3), Autosomal dominant	Tbk1 (MGI:1929658)
chr12	64610512	64697566	12q14.1	12q14.2	607019	RASSF3	Ras association domain family protein 3	RASSF3	283349	ENSG00000153179			Rassf3 (MGI:2179722)
chr12	64700000	67300000	12q14.3		611547	STQTL9	Stature quantitative trait locus 9				associated with rs1042725	{Stature QTL 9}, 611547 (2)	
chr12	64713441	64759445	12q14	12q14.3	607664	GNS, G6S	N-acetylglucosamine-6-sulfatase	GNS	2799	ENSG00000135677		Mucopolysaccharidosis type IIID, 252940 (3), Autosomal recessive	Gns (MGI:1922862)
chr12	64759496	64881021	12q14.3	12q14.3	615077	TBC1D30, KIAA0984	TBC1 domain family, member 30	TBC1D30	23329	ENSG00000111490			Tbc1d30 (MGI:1921944)
chr12	65050623	65121565	Chr.12	12q14.3	605186	WIF1	WNT inhibitory factor 1	WIF1	11197	ENSG00000156076			Wif1 (MGI:1344332)
chr12	65169570	65248360	12q14	12q14.3	607844	LEMD3, MAN1	LEM domain-containing 3	LEMD3	23592	ENSG00000174106		Buschke-Ollendorff syndrome, 166700 (3), Autosomal dominant; Osteopoikilosis with or without melorheostosis, 166700 (3), Autosomal dominant	Lemd3 (MGI:3580376)
chr12	65278592	65466906	12q14.3	12q14.3	613719	MSRB3, DFNB74	Methionine sulfoxide reductase B3	MSRB3	253827	ENSG00000174099		Deafness, autosomal recessive 74, 613718 (3), Autosomal recessive	Msrb3 (MGI:2443538)
chr12	65824459	65966290	12q14.3	12q14.3	600698	HMGA2, HMGIC, BABL	High-mobility group AT-hook 2	HMGA2	8091	ENSG00000149948	fusion partners with RAD51B, ALDH2, COX6C, HEI10 in uterine leiomyomas	Leiomyoma, uterine, somatic, 150699 (1)	
chr12	66123068	66130752	12q14.3	12q14.3	616998	LLPH	LLP, Aplysia, homolog of	LLPH	84298	ENSG00000139233			Llph-ps1,Llph-ps2,Llph (MGI:3649506,MGI:1913475,MGI:3642864)
chr12	66136935	66170071	12q14.3	12q14.3	616874	TMBIM4, GAAP	Transmembrane BAX inhibitor motif-containing protein 4	TMBIM4	51643	ENSG00000155957			Tmbim4 (MGI:1915462)
chr12	66189197	66254621	12q14.3	12q14.3	604459	IRAK3, IRAKM, ASRT5	Interleukin 1 receptor-associated kinase 3	IRAK3	11213	ENSG00000090376		{Asthma susceptibility 5}, 611064 (3)	Irak3 (MGI:1921164)
chr12	66302544	66343642	12q13	12q14.3	614539	HELB, HDHB	Helicase, DNA, B	HELB	92797	ENSG00000127311			Helb (MGI:2152895)
chr12	66347430	67069264	12q14.3	12q14.3	604597	GRIP1, FRASRS3	Glutamate receptor-interacting protein 1	GRIP1	23426	ENSG00000155974		Fraser syndrome 3, 617667 (3), Autosomal recessive	Grip1 (MGI:1921303)
chr12	67269280	67314691	12q14.3-q15	12q14-q15	607727	CAND1, TIP120A, TIP120, KIAA0829	Cullin-associated neddylation-dissociated protein 1	CAND1	55832	ENSG00000111530			Cand1 (MGI:1261820)
chr12	67300000	71100000	12q15		612639	IBD26	Inflammatory bowel disease 26		100271838		associated with rs1558744	{Inflammatory bowel disease 26}, 612639 (2)	
chr12	67648731	67665404	12q14	12q15	603496	DYRK2	Dual-specificity tyrosine phosphorylation-regulated kinase 2	DYRK2	8445	ENSG00000127334			Dyrk2 (MGI:1330301)
chr12	68154769	68159740	12q14	12q15	147570	IFNG, IFG, IFI	Interferon, gamma	IFNG	3458	ENSG00000111537	3 introns; none in IFF, IFL	{AIDS, rapid progression to}, 609423 (3); {Aplastic anemia}, 609135 (3); {Hepatitis C virus, response to therapy of}, 609532 (3); {TSC2 angiomyolipomas, renal, modifier of}, 613254 (3), Autosomal dominant; {Tuberculosis, protection against}, 607948 (3)	Ifng (MGI:107656)
chr12	68201348	68225790	12q15	12q15	605679	IL26, AK155	Interleukin 26	IL26	55801	ENSG00000111536			
chr12	68248244	68253500	12q15	12q15	605330	IL22, IL21, ILTIF	Interleukin 22	IL22	50616	ENSG00000127318			Il22,Iltifb (MGI:1355307,MGI:2151139)
chr12	68294565	68332413	12q15	12q15	613813	MDM1	Mouse double minute 1 homolog	MDM1	56890	ENSG00000111554			Mdm1 (MGI:96951)
chr12	68610838	68660604	12q14	12q15	179530	RAP1B	RAS-related protein RAP1B	RAP1B	5908	ENSG00000127314			Rap1b (MGI:894315)
chr12	68686950	68745813	12q15	12q15	607617	NUP107, NUP84, NPHS11	Nucleoporin, 107kD	NUP107	57122	ENSG00000111581		Nephrotic syndrome, type 11, 616730 (3), Autosomal recessive	Nup107 (MGI:2143854)
chr12	68808148	68845543	12q14.3-q15	12q15	164785	MDM2, ACTFS	Mouse double minute 2, homolog of (p53-binding protein)	MDM2	4193	ENSG00000135679		{Accelerated tumor formation, susceptibility to}, 614401 (3)	Mdm2 (MGI:96952)
chr12	68842192	68963239	12q15	12q15	114860	CPM	Carboxypeptidase M	CPM	1368	ENSG00000135678			Cpm (MGI:1917824)
chr12	69239536	69274357	Chr.12	12q15	604979	CPSF6, CFIM	Cleavage and polyadenylation specific factor 6, 68kD subunit	CPSF6	11052	ENSG00000111605			Cpsf6 (MGI:1913948)
chr12	69348353	69354232	12q15	12q15	153450	LYZ	Lysozyme	LYZ	4069	ENSG00000090382		Amyloidosis, renal, 105200 (3), Autosomal dominant	Lyz1,Lyz2 (MGI:96902,MGI:96897)
chr12	69359704	69427076	12q13-q15	12q15	602116	YEATS4, GAS41	YEATS domain-containing protein 4	YEATS4	8089	ENSG00000127337			Yeats4 (MGI:1927224)
chr12	69470348	69579792	12q15	12q15	607743	FRS2, FRS1A, SNT1	Fibroblast growth factor receptor substrate 2	FRS2	10818	ENSG00000166225			Frs2 (MGI:1100860)
chr12	69585427	69601576	Chr.12	12q15	605139	CCT2, CCTB	Chaperonin containing T-complex polypeptide 1, subunit 2	CCT2	10576	ENSG00000166226			Cct2 (MGI:107186)
chr12	69608563	69611161	12q15	12q15	610846	LRRC10, HRLRRP	Leucine-rich repeat-containing protein 10	LRRC10	376132	ENSG00000198812			Lrrc10 (MGI:2448063)
chr12	69643507	69738363	12q14.2-q15	12q15	607337	BEST3, VMD2L3	Bestrophin 3	BEST3	144453	ENSG00000127325			Best3 (MGI:3580298)
chr12	70242992	70354992	12q15	12q15	604909	CNOT2, NOT2	CCR4-NOT transcription complex, subunit 2	CNOT2	4848	ENSG00000111596			Cnot2 (MGI:1919318)
chr12	70366219	70434291	12q14.1-q15	12q15	605223	KCNMB4	Potassium large conductance calcium-activated channel, subfamily M, beta member 4	KCNMB4	27345	ENSG00000135643			Kcnmb4 (MGI:1913272)
chr12	70515870	70637439	12q15-q21	12q15	176882	PTPRB	Protein tyrosine phosphatase, receptor type, beta polypeptide	PTPRB	5787	ENSG00000127329			Ptprb (MGI:97809)
chr12	70638072	70920803	12q15	12q15	602853	PTPRR, PCPTP1	Protein-tyrosine phosphatase, receptor type, R	PTPRR	5801	ENSG00000153233			Ptprr (MGI:109559)
chr12	71100000	108600000	12q21-q23		612715	DUH2	Dyschromatosis universalis hereditaria 2		100301525		between rs1921045 and rs2373584	Dyschromatosis universalis hereditaria 2, 612715 (2)	
chr12	71100000	108600000	12q21-q23		603221	MYP3	Myopia, high grade, 3, autosomal dominant	MYP3	8782			Myopia-3, 603221 (2), Autosomal dominant	
chr12	71100000	92200000	12q21		169900	PEPB	Peptidase B	PEPB	5182				
chr12	71125092	71157998	12q14.1-q21.1	12q21.1	600769	TSPAN8, TM4SF3	Tetraspanin 8	TSPAN8	7103	ENSG00000127324			Tspan8 (MGI:2384918)
chr12	71439769	71586309	12q15-q23	12q21.1	606667	GPR49, LGR5	G protein-coupled receptor-49	LGR5	8549	ENSG00000139292			Lgr5 (MGI:1341817)
chr12	71663896	71680647	12q21.1	12q21.1	612531	THAP2	THAP domain-containing protein 2	THAP2	83591	ENSG00000173451			Thap2 (MGI:1914066)
chr12	71754862	71793475	12q21.1	12q21.1	612398	RAB21, KIAA0118	RAB-associated protein RAB21	RAB21	23011	ENSG00000080371			Rab21 (MGI:894308)
chr12	71839706	71926848	12q21.1	12q21.1	612662	TBC1D15	TBC1 domain family, member 15	TBC1D15	64786	ENSG00000121749			Tbc1d15 (MGI:1913937)
chr12	71938845	72032440	12q21.1	12q21.1	607478	TPH2, NTPH, ADHD7	Tryptophan hydroxylase 2	TPH2	121278	ENSG00000139287		{Attention deficit-hyperactivity disorder, susceptibility to, 7}, 613003 (3); {Unipolar depression, susceptibility to}, 608516 (3)	Tph2 (MGI:2651811)
chr12	72087287	72666661	12q15-q21	12q21.1	606950	TRHDE	Thyrotropin-releasing hormone-degrading ectoenzyme	TRHDE	29953	ENSG00000072657			Trhde (MGI:2384311)
chr12	74537770	74541451	12q21	12q21.1	615579	ATXN7L3B	Ataxin 7-like 3B	ATXN7L3B	552889	ENSG00000253719			Atxn7l3b (MGI:1914971)
chr12	75040077	75209747	12q21.1	12q21.1	176256	KCNC2	Potassium voltage-gated channel, Shaw-related subfamily, member 2	KCNC2	3747	ENSG00000166006	previously on 19q13.3-q13.4		Kcnc2 (MGI:96668)
chr12	75275978	75390936	12q15	12q21.1-q21.2	607724	CAPS2	Calcyphosine 2	CAPS2	84698	ENSG00000180881			Caps2 (MGI:2441980)
chr12	75331833	75370389	12q21	12q21.2	610395	GLIPR1L1	GLIPR1-like protein 1	GLIPR1L1	256710	ENSG00000173401			Glipr1l1,Glipr1l3 (MGI:1916536,MGI:3620621)
chr12	75391069	75432687	12q21	12q21.2	610394	GLIPR1L2	GLIPR1-like protein 2	GLIPR1L2	144321	ENSG00000180481			Glipr1l2 (MGI:1914787)
chr12	75480732	75501935	12q21	12q21.2	602692	GLIPR1, GLIPR, RTVP1	Glioma pathogenesis-related protein 1	GLIPR1	11010	ENSG00000139278			Glipr1 (MGI:1920940)
chr12	75497638	75511637	12q21.2	12q21.2	612817	KRR1	KRR1, yeast, homolog of	KRR1	11103	ENSG00000111615			Krr1 (MGI:1289274)
chr12	76025446	76031775	12q15-q21.2	12q21.2	605335	PHLDA1, TDAG51	Pleckstrin homology-like domain, family A, member 1	PHLDA1	22822	ENSG00000139289			Phlda1 (MGI:1096880)
chr12	76044744	76085032	12q21.2	12q21.2	164060	NAP1L1, NAP1L	Nucleosome assembly protein 1-like 1	NAP1L1	4673	ENSG00000187109			Nap1l1 (MGI:1855693)
chr12	76344485	76348441	12q21.2	12q21.2	610148	BBS10, C12orf58, FLJ23560	BBS10 gene	BBS10	79738	ENSG00000179941		Bardet-Biedl syndrome 10, 615987 (3), Autosomal recessive	Bbs10 (MGI:1919019)
chr12	76351796	76559808	12p	12q21.2	606736	OSBPL8, ORP8, KIAA1451	Oxysterol-binding protein-like protein 8	OSBPL8	114882	ENSG00000091039			Osbpl8 (MGI:2443807)
chr12	76764073	76853700	12q14-q15	12q21.2	607799	ZDHHC17, HIP14	Zinc finger DHHC domain-containing protein 17	ZDHHC17	23390	ENSG00000186908			Zdhhc17 (MGI:2445110)
chr12	76858714	76879039	12q21.1	12q21.2	601871	CSRP2, LMO5	Cysteine and glycine-rich protein-2 (LIM domain only 5, smooth muscle)	CSRP2	1466	ENSG00000175183	pseudogene on 3q21.1		Csrp2 (MGI:1202907)
chr12	77021245	77065579	12q21.3	12q21.2	612046	E2F7	E2F transcription factor 7	E2F7	144455	ENSG00000165891			E2f7 (MGI:1289147)
chr12	77571855	78213011	12q21.1	12q21.2	611629	NAV3, POMFIl1, KIAA0938	Neuron navigator 3	NAV3	89795	ENSG00000067798			Nav3 (MGI:2183703)
chr12	78863992	79452007	12cen-q21	12q21.2	185605	SYT1	Synaptotagmin-1	SYT1	6857	ENSG00000067715			Syt1 (MGI:99667)
chr12	79584873	79691096	12q21	12q21.2	601936	PAWR, PAR4	PRKC, apoptosis, WT1, regulator	PAWR	5074	ENSG00000177425			Pawr (MGI:2149961)
chr12	79773562	79935763	12q15-q21.2	12q21.2-q21.3	602021	PPP1R12A, MYPT1	Protein phosphatase 1, regulatory subunit 12A (myosin phosphatase target subunit 1)	PPP1R12A	4659	ENSG00000058272			Ppp1r12a (MGI:1309528)
chr12	80130376	80379089	12q21.31	12q21.31	614925	OTOGL, C12orf64, DFNB84B	Otogelin-like protein	OTOGL	283310	ENSG00000165899		Deafness, autosomal recessive 84B, 614944 (3), Autosomal recessive	Otogl (MGI:3647600)
chr12	80424260	80680272	12q21.2	12q21.31	603317	PTPRQ, PTPGMC1, DFNB84A, DFNA73	Protein-tyrosine phosphatase, receptor-type, Q	PTPRQ	374462	ENSG00000139304	mutation identified in 1 DFNA73 family	Deafness, autosomal dominant 73, 617663 (3), Autosomal dominant; Deafness, autosomal recessive 84A, 613391 (3), Autosomal recessive	Ptprq (MGI:1096349)
chr12	80707628	80709477	12q21	12q21.31	159991	MYF6, CNM3	Myogenic factor-6	MYF6	4618	ENSG00000111046	6.5kb upstream from MYF5; both prob. 12q15, by H	Centronuclear myopathy 3, 614408 (3), Autosomal dominant	Myf6 (MGI:97253)
chr12	80716928	80719667	12q21	12q21.31	159990	MYF5	Myogenic factor-5	MYF5	4617	ENSG00000111049			Myf5 (MGI:97252)
chr12	80792519	80937914	12q21.31	12q21.31	603380	LIN7A, VELI1, MALS1	Lin7, C. elegans, homolog of, A	LIN7A	8825	ENSG00000111052			Lin7a (MGI:2135609)
chr12	81078017	81256758	12q21.31	12q21.31	614356	ACSS3	Acyl-CoA synthetase short-chain family, member 3	ACSS3	79611	ENSG00000111058			Acss3 (MGI:2685720)
chr12	82686951	83134867	12q21.31	12q21.31	615856	TMTC2	Transmembrane and tetratricopeptide repeat domains-containing protein 2	TMTC2	160335	ENSG00000179104			Tmtc2 (MGI:1914057)
chr12	84859487	84912828	12q21.3-q21.4	12q21.31	607971	SLC6A15, SBAT1	Solute carrier family 6 (neurotransmitter transporter), member 15	SLC6A15	55117	ENSG00000072041			Slc6a15 (MGI:2143484)
chr12	85280257	85301783	12q21.3-q22	12q21.31	601527	ALX1, CART1, FND3	Aristaless-like homeobox 1 (cartilage homeoprotein 1)	ALX1	8092	ENSG00000180318	mutation identified in 1 FND3 patient	?Frontonasal dysplasia 3, 613456 (3)	Alx1 (MGI:104621)
chr12	85800702	85836539	12q21.31	12q21.31	610383	RASSF9, PAMCI, PCIP1	Ras association domain family, member 9	RASSF9	9182	ENSG00000198774			Rassf9 (MGI:2384307)
chr12	85874294	85882991	12q21	12q21.31	162650	NTS	Neurotensin	NTS	4922	ENSG00000133636			Nts (MGI:1328351)
chr12	85972280	86839005	12q21	12q21.31-q21.32	607385	GNTIVH	UDP-N-acetylglucosamine:alpha-1,3-D-mannoside beta-1,4-N-acetylglucosaminyltransferase IV	MGAT4C	25834	ENSG00000182050			Mgat4c (MGI:1914819)
chr12	88049012	88142215	12q21.3	12q21.32	610142	CEP290, KIAA0373, 3H11AG, JBTS5, SLSN6, LCA10, BBS14	Centrosomal protein, 290kD	CEP290	80184	ENSG00000198707	mutation identified in 1 BBS14 family	?Bardet-Biedl syndrome 14, 615991 (3), Autosomal recessive; Joubert syndrome 5, 610188 (3), Autosomal recessive; Leber congenital amaurosis 10, 611755 (3); Meckel syndrome 4, 611134 (3), Autosomal recessive; Senior-Loken syndrome 6, 610189 (3), Autosomal recessive	Cep290 (MGI:2384917)
chr12	88142295	88199886	12q21.32	12q21.32	617218	TMTC3, SMILE, LIS8	Transmembrane and tetratricopeptide repeat domains-containing protein 3	TMTC3	160418	ENSG00000139324		Lissencephaly 8, 617255 (3), Autosomal recessive	Tmtc3 (MGI:3036255)
chr12	88492792	88580472	12q22	12q21.32	184745	KITLG, MGF, SF, SCF, SHEP7, FPHH, DCUA, DFNA69	KIT ligand (mast cell growth factor; steel, mouse, homolog of)	KITLG	4254	ENSG00000049130	associated with dbSNP rs12821256	Deafness, autosomal dominant 69, unilateral or asymmetric, 616697 (3), Autosomal dominant; Hyperpigmentation with or without hypopigmentation, 145250 (3), Autosomal dominant; [Skin/hair/eye pigmentation 7, blond/brown hair], 611664 (3)	Kitl (MGI:96974)
chr12	88600000	92200000	12q21.33		121400	CNA1	Cornea plana 1, autosomal dominant	CNA1	1255		between D12S82 and D12S351	Cornea plana 1, autosomal dominant, 121400 (2), Autosomal dominant	
chr12	88600000	92200000	12q21.33		612868	PACD	Corneal dystrophy, posterior amorphous				contiguous gene deletion syndrome	Corneal dystrophy, posterior amorphous, 612868 (4), Autosomal dominant	
chr12	89347824	89352858	12q21.33	12q21.33	602748	DUSP6, MKP3, PYST1, HH19	Dual-specificity phosphatase-6	DUSP6	1848	ENSG00000139318		Hypogonadotropic hypogonadism 19 with or without anosmia, 615269 (3), Autosomal dominant	Dusp6 (MGI:1914853)
chr12	89419717	89526261	12q21.33	12q21.33	614784	POC1B, PIX1, CORD20	POC1 centriolar protein, Chlamydomonas, homolog of, B	POC1B	282809	ENSG00000139323		Cone-rod dystrophy 20, 615973 (3), Autosomal recessive	Poc1b (MGI:1918511)
chr12	89519411	89524805	12q21.3-q22	12q21.33	603565	GALNT4, GalNAcT4	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 4	GALNT4	8693	ENSG00000257594			Galnt4 (MGI:894692)
chr12	89588048	89709352	12q21-q23	12q21.33	108731	ATP2B1, PMCA1	ATPase, Ca++ transporting, plasma membrane, 1	ATP2B1	490	ENSG00000070961			Atp2b1 (MGI:104653)
chr12	90963678	91005025	12q21	12q21.33	601657	EPYC, DSPG3	Epiphycan	EPYC	1833	ENSG00000083782			Epyc (MGI:107942)
chr12	91050490	91058353	12q22	12q21.33	603288	KERA, CNA2	Keratocan	KERA	11081	ENSG00000139330		Cornea plana 2, autosomal recessive, 217300 (3), Autosomal recessive	Kera (MGI:1202398)
chr12	91103454	91111764	12q21.3-q22	12q21.33	600616	LUM, LDC	Lumican	LUM	4060	ENSG00000139329			Lum (MGI:109347)
chr12	91143276	91183123	12q21.3	12q21.33	125255	DCN, CSCD	Decorin	DCN	1634	ENSG00000011465	conflicting assignments to 12q23 and 12q13.2	Corneal dystrophy, congenital stromal, 610048 (3), Autosomal dominant	Dcn (MGI:94872)
chr12	92140277	92145896	12q22	12q21.33	109580	BTG1	B-cell translocation gene 1, anti-proliferative	BTG1	694	ENSG00000133639			Btg1 (MGI:88215)
chr12	92200000	108600000	12q22-q23.3		608096	ETL2, FTLE	Epilepsy, familial temporal lobe		619399		max lod at D12S1706	Epilepsy, familial temporal lobe, 2, 608096 (2), Autosomal dominant	
chr12	92200000	103500000	12q22-q23.2		608520	MDD1	Major depressive disorder		431708		max lod with D12S1706	Major depressive disorder 1, 608516 (2)	
chr12	92420085	92432998	12q22	12q22	616989	CLLU1OS	Chronic lymphocytic leukemia upregulated 1, opposite strand	CLLU1OS	574016	ENSG00000205057			
chr12	92421530	92431001	12q22	12q22	616988	CLLU1	Chronic lymphocytic leukemia upregulated gene 1	CLLU1	574028				
chr12	92772508	92975227	12q22	12q22	605070	EEA1	Early endosome antigen 1	EEA1	8411				Eea1 (MGI:2442192)
chr12	93408311	93442335	12q22	12q22	603679	UBE2N, UBCHBEN; UBC13	Ubiquitin-conjugating enzyme E2N	UBE2N	7334	ENSG00000177889			Ube2n (MGI:1934835)
chr12	93467489	93503771	12q22	12q22	611847	MRPL42, MRPL31, MRPS32	Mitochondrial ribosomal protein L42	MRPL42	28977	ENSG00000198015			Mrpl42 (MGI:1333774)
chr12	93565627	93571397	12q22	12q22	617269	SOCS2AS1	SOCS2 antisense RNA 1	SOCS2-AS1	144481				
chr12	93677341	93894839	12q21.33-q23.1	12q22	603454	CRADD, RAIDD, MRT34	Caspase and RIP adaptor with death domain	CRADD	8738	ENSG00000169372		Mental retardation, autosomal recessive 34, with variant lissencephaly, 614499 (3), Autosomal recessive	Cradd (MGI:1336168)
chr12	94265651	94460615	12q22	12q22	615847	CEP83, CCDC41, NPHP18	Centrosomal protein, 83kD	CEP83	51134	ENSG00000173588		Nephronophthisis 18, 615862 (3), Autosomal recessive	Cep83 (MGI:1924298)
chr12	94148722	94307674	Chr.12	12q22	604259	VESPR	Virus-encoded semaphorin protein receptor	PLXNC1	10154	ENSG00000136040			Plxnc1 (MGI:1890127)
chr12	94567123	94650561	12q22	12q22	617459	TMCC3	Transmembrane and coiled-coil domain family, member 3	TMCC3	57458	ENSG00000057704			Tmcc3 (MGI:2442900)
chr12	94834397	94834512	12q22	12q22	614384	MIR492	Micro RNA 492	MIR492	574449		within KRT19		
chr12	94971327	95003712	12q22	12q22	614530	NDUFA12	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 12	NDUFA12	55967	ENSG00000184752		Leigh syndrome due to mitochondrial complex 1 deficiency, 256000 (3), Autosomal recessive, Mitochondrial	Ndufa12 (MGI:1913664)
chr12	95020228	95073627	12q22	12q22	601529	NR2C1, TR2	Nuclear receptor subfamily 2, group C, member 1	NR2C1	7181	ENSG00000120798			Nr2c1 (MGI:1352465)
chr12	95076748	95217463	12q22	12q22	613520	FGD6, ZFYVE24	FYVE, RhoGEF, and ph domain-containing protein 6	FGD6	55785	ENSG00000180263			Fgd6 (MGI:1261419)
chr12	95474045	95515838	12q22	12q22	601870	METAP2, p67	Methionine aminopeptidase 2	METAP2	10988	ENSG00000111142			Metap2 (MGI:1929701)
chr12	95516559	95551528	12q22	12q22	610993	USP44	Ubiquitin-specific protease 44	USP44	84101	ENSG00000136014			Usp44 (MGI:3045318)
chr12	95657806	95791205	12q22-q23	12q22	610401	NTN4	Netrin 4	NTN4	59277	ENSG00000074527			Ntn4 (MGI:1888978)
chr12	95800000	133275309	12q23-q24		613096	SPG36	Spastic paraplegia-36	SPG36	791228		between D12S360 and D12S354	Spastic paraplegia 36, autosomal dominant, 613096 (2), Autosomal dominant	
chr12	95858930	95866459	12q23.1	12q23.1	603541	SNRPF	Small nuclear ribonucleoprotein polypeptide F	SNRPF	6636	ENSG00000139343			Snrpf (MGI:1917128)
chr12	95972661	95996364	12q22-q23	12q23.1	609457	HAL, HSTD	Histidine ammonia-lyase (histidase)	HAL	3034	ENSG00000084110		[Histidinemia], 235800 (3), Autosomal recessive, Autosomal dominant	Hal (MGI:96010)
chr12	96000752	96043519	12q22	12q23.1	151570	LTA4H	Leukotriene A4 hydrolase	LTA4H	4048	ENSG00000111144			Lta4h (MGI:96836)
chr12	96194381	96269834	12q23	12q23.1	600247	ELK3, SAP2, ERP	ELK3, ETS-domain protein (SRF accessory protein 2)	ELK3	2004	ENSG00000111145			Elk3 (MGI:101762)
chr12	96278260	96400587	12q23.1	12q23.1	603440	CDK17, PCTK2, PCTAIRE2	Cyclin-dependent kinase 17	CDK17	5128	ENSG00000059758			Cdk17 (MGI:97517)
chr12	96907221	96953690	12q22	12q23.1	600372	NEDD1	Neural precursor cell expressed, developmentally down-regulated 1	NEDD1	121441	ENSG00000139350			Nedd1 (MGI:97293)
chr12	97462775	97565014	12q21	12q23.1	607045	RMST, NCRMS, NCRNA00054	Rhabdomyosarcoma 2-associated transcript	RMST	196475				
chr12	98515572	98550378	12q22	12q23.1	188380	TMPO, LAP2	Thymopoietin	TMPO	7112	ENSG00000120802			Tmpo (MGI:106920)
chr12	98593624	98601999	12q23	12q23.1	600370	SLC25A3, PHC	Solute carrier family 25 (mitochondrial carrier), member 3	SLC25A3	5250	ENSG00000075415		Mitochondrial phosphate carrier deficiency, 610773 (3)	Slc25a3 (MGI:1353498)
chr12	98613403	98645050	12q23	12q23.1	609861	IKIP	I-kappa-B kinase-interacting protein	IKBIP	121457	ENSG00000166130			Ikbip (MGI:1914704)
chr12	98645140	98735432	12q23	12q23.1	602233	APAF1	Apoptotic protease activating factor 1	APAF1	317	ENSG00000120868			Apaf1 (MGI:1306796)
chr12	98729903	99984772	12q23.1	12q23.1	607815	ANKS1B, EB1	Ankyrin repeat and sterile alpha motif domain-containing protein 1B	ANKS1B	56899	ENSG00000185046			Anks1b (MGI:1924781)
chr12	100267139	100341723	12q23.1	12q23.1	616365	SCYL2, CVAK104, KIAA1360	SCY1-like protein 2	SCYL2	55681	ENSG00000136021			Scyl2 (MGI:1289172)
chr12	100357078	100422058	12q23	12q23.1	607557	SLC17A8, VGLUT3, DFNA25	Solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 8 (vesicular glutamate transporter 3)	SLC17A8	246213	ENSG00000179520		Deafness, autosomal dominant 25, 605583 (3), Autosomal dominant	Slc17a8 (MGI:3039629)
chr12	100473772	100563866	12q23.1	12q23.1	603826	NR1H4, FXR, RIP14, PFIC5	Nuclear receptor subfamily 1 group H member 4	NR1H4	9971	ENSG00000012504		Cholestasis, progressive familial intrahepatic, 5, 617049 (3), Autosomal recessive	Nr1h4 (MGI:1352464)
chr12	100573660	100628287	12q23.1	12q23.1	617224	GAS2L3, G2L3	Growth arrest-specific 2-like 3	GAS2L3	283431	ENSG00000139354			Gas2l3 (MGI:1918780)
chr12	100717456	101128640	12q23	12q23.1	610111	TMEM16D, FLJ34272	Transmembrane protein 16D	ANO4	121601	ENSG00000151572			Ano4 (MGI:2443344)
chr12	101156215	101210273	12q22-q23	12q23.1-q23.2	608044	SLC5A8, AIT, SMCT	Solute carrier family (iodide transporter), member 8	SLC5A8	160728	ENSG00000256870			Slc5a8 (MGI:2384916)
chr12	101200000	103500000	12q23.2		614985	HELLPAR, lncHELLP	HELLP syndrome-associated long noncoding RNA	HELLPAR	101101692				
chr12	101280126	101386618	12q23.2-q23.3	12q23.2	612822	UTP20, DRIM	UTP20, S. cerevisiae, homolog of	UTP20	27340	ENSG00000120800			Utp20 (MGI:1917933)
chr12	101393119	101407819	12q23.2	12q23.2	603425	ARL1	ADP-ribosylation factor-like 1	ARL1	400	ENSG00000120805			Arl1 (MGI:99436)
chr12	101475275	101486996	12q22	12q23.2	612568	SPIC	SPIC transcription factor	SPIC	121599	ENSG00000166211			Spic (MGI:1341168)
chr12	101594848	101695840	12q23.2	12q23.2	160794	MYBPC1, LCCS4	Myosin-binding protein C, slow type	MYBPC1	4604	ENSG00000196091		Arthrogryposis, distal, type 1B, 614335 (3), Autosomal dominant; Lethal congenital contracture syndrome 4, 614915 (3), Autosomal recessive	Mybpc1 (MGI:1336213)
chr12	101697638	101752037	12q23.2	12q23.2	616747	CHPT1, CPT, CPT1	Choline phosphotransferase 1	CHPT1	56994	ENSG00000111666			Chpt1 (MGI:2384841)
chr12	101728647	101739720	12q23	12q23.2	604759	SYCP3, SCP3, COR1, SPGF4, RPRGL4	Synaptonemal complex protein 3	SYCP3	50511	ENSG00000139351		Pregnancy loss, recurrent, 4, 270960 (3), Autosomal dominant; Spermatogenic failure 4, 270960 (3), Autosomal dominant	Sycp3 (MGI:109542)
chr12	101745496	101830866	12q23.3	12q23.2	607840	GNPTAB, GNPTA	N-acetylglucosamine-1-phosphate transferase, alpha/beta subunits	GNPTAB	79158	ENSG00000111670	conflicting assignment to 4q	Mucolipidosis II alpha/beta, 252500 (3), Autosomal recessive; Mucolipidosis III alpha/beta, 252600 (3), Autosomal recessive	Gnptab (MGI:3643902)
chr12	101877326	101923622	12q23.2	12q23.2	610776	DRAM1	Damage-regulated autophagy modulator 1	DRAM1	55332	ENSG00000136048			Dram1 (MGI:1918962)
chr12	102073961	102120130	12q23.2	12q23.2	609264	NUP37, p37	Nucleoporin, 37kD	NUP37	79023	ENSG00000075188			Nup37 (MGI:1919964)
chr12	102120170	102197519	12q23	12q23.2	613687	C12orf48, AROM, PARPBP	Chromosome 12 open reading frame 48	PARPBP	55010	ENSG00000185480			Parpbp (MGI:1922567)
chr12	102196458	102199539	12q23-q24	12q23.2	176795	PMCH	Pro-melanin-concentrating hormone	PMCH	5367	ENSG00000183395			Pmch (MGI:97629)
chr12	102395859	102481838	12q22-q24.1	12q23.2	147440	IGF1	Insulin-like growth factor-1, or somatomedin C	IGF1	3479	ENSG00000017427		Growth retardation with deafness and mental retardation due to IGF1 deficiency, 608747 (3), Autosomal recessive	Igf1 (MGI:96432)
chr12	102836884	102958409	12q24.1	12q23.2	612349	PAH, PKU1	Phenylalanine hydroxylase	PAH	5053	ENSG00000171759	close to IGF1	[Hyperphenylalaninemia, non-PKU mild], 261600 (3), Autosomal recessive; Phenylketonuria, 261600 (3), Autosomal recessive	Pah (MGI:97473)
chr12	102957673	102960515	12q22-q23	12q23.2	100790	ASCL1, ASH1	Achaete-scute complex, Drosophila, homolog-like 1	ASCL1	429	ENSG00000139352	distal to PAH and proximal to TRA1	Central hypoventilation syndrome, congenital, 209880 (3), Autosomal dominant; Haddad syndrome, 209880 (3), Autosomal dominant	Ascl1 (MGI:96919)
chr12	103746314	103841238	12q22-q23.1	12q23.3	611076	NT5DC3, TU12B1TY, GNN	5' nucleotidase domain-containing protein 3	NT5DC3	51559	ENSG00000111696			Nt5dc3 (MGI:3513266)
chr12	103930333	103947929	12q23.3	12q23.3	191175	HSP90B1, TRA1, GRP94, GP96	Heat-shock protein, 90kD, beta, 1	HSP90B1	7184	ENSG00000166598			Hsp90b1 (MGI:98817)
chr12	103965814	103988877	12q24.1	12q23.3	601423	TDG	Thymine-DNA glycosylase	TDG	6996	ENSG00000139372			Tdg,Tdg-ps (MGI:108247,MGI:3645587)
chr12	104064457	104108953	12q23.3	12q23.3	607926	HCFC2, HCF2	Host cell factor C2	HCFC2	29915	ENSG00000111727			Hcfc2 (MGI:1915183)
chr12	104117079	104138261	12q23.3	12q23.3	189904	NFYB	Transcription factor NF-Y, B subunit	NFYB	4801	ENSG00000120837			Nfyb (MGI:97317)
chr12	104215778	104350306	12q23-q24.1	12q23.3	601112	TXNRD1, TXNR	Thioredoxin reductase-1	TXNRD1	7296	ENSG00000198431			Txnrd1 (MGI:1354175)
chr12	104303731	104305204	12q23-q24.1	12q23.3	612986	EID3, NSMCE4B, NSE4B	E1A-like inhibitor of differentiation 3	EID3	493861	ENSG00000255150			Eid3 (MGI:1913591)
chr12	104456913	104762013	12q23	12q23.3	610128	CHST11, C4ST1	Carbohydrate sulfotransferase 11	CHST11	50515	ENSG00000171310			Chst11 (MGI:1927166)
chr12	104802552	104958743	12q23.3	12q23.3	610802	SLC41A2	Solute carrier family 41, member 2	SLC41A2	84102	ENSG00000136052			Slc41a2 (MGI:2442940)
chr12	105019783	105084608	12q23.3	12q23.3	613584	ALDH1L2	Aldehyde dehydrogenase 1 family, member L2	ALDH1L2	160428	ENSG00000136010			Aldh1l2 (MGI:2444680)
chr12	105107713	105169133	12q23.3	12q23.3	615748	WASHC4, KIAA1033, SWIP, MRT43	WASH complex, subunit 4	WASHC4	23325	ENSG00000136051	mutation identified in 1 MRT43 family	?Mental retardation, autosomal recessive 43, 615817 (3), Autosomal recessive	Washc4 (MGI:2441787)
chr12	105173296	105236229	12q24.1	12q23.3	606231	APPL2, FLJ10659	Adaptor protein, phosphotyrosine interaction, PH domain, and leucine zipper-containing protein 2	APPL2	55198	ENSG00000136044			Appl2 (MGI:2384914)
chr12	106063346	106140032	12q23.3	12q23.3	608130	NUAK1, ARK5,  KIAA0537	NUAK family, SNF1-like kinase, 1	NUAK1	9891	ENSG00000074590			Nuak1 (MGI:1925226)
chr12	106357657	106510197	12q23.3	12q23.3	614366	POLR3B, RPC2, C128, HLD8	Polymerase III, RNA, subunit B	POLR3B	55703	ENSG00000013503		Leukodystrophy, hypomyelinating, 8, with or without oligodontia and/or hypogonadotropic hypogonadism, 614381 (3), Autosomal recessive	Polr3b (MGI:1917678)
chr12	106774555	106889315	12q23.3	12q23.3	609147	RIC8B	Ric8, C. elegans, homolog of, B	RIC8B	55188	ENSG00000111785			Ric8b (MGI:2682307)
chr12	106972855	106987165	12q23.3	12q23.3	616929	MTERF2, MTERFD3	Transcription termination factor 2, mitochondrial	MTERF2	80298	ENSG00000120832			Mterf2 (MGI:1921488)
chr12	106991363	107093871	12q23-q24.1	12q23.3	601933	CRY1, PHLL1, DSPD	Cryptochrome 1 (photolyase-like)	CRY1	1407	ENSG00000008405		{Delayed sleep phase disorder, susceptibility to}, 614163 (3), Autosomal dominant	Cry1 (MGI:1270841)
chr12	107732865	107761271	12q23-q24.1	12q23.3	605780	PRDM4, PFM1	PR domain-containing protein 4	PRDM4	11108	ENSG00000110851			Prdm4 (MGI:1920093)
chr12	108288043	108339346	12q24.1	12q23.3	602351	CMKLR1	Chemokine-like receptor 1	CMKLR1	1240	ENSG00000174600			Cmklr1 (MGI:109603)
chr12	108522213	108561388	12q24.1	12q23.3	611684	SART3, P100, KIAA0156, TIP110	Squamous cell carcinoma antigen recognized by T cells 3	SART3	9733	ENSG00000075856			Sart3 (MGI:1858230)
chr12	108561462	108569383	12q24.1	12q23.3	611911	ISCU, HML	Iron-sulfur cluster scaffold, E. coli, homolog of	ISCU	23479	ENSG00000136003		Myopathy with lactic acidosis, hereditary, 255125 (3), Autosomal recessive	Iscu (MGI:1913633)
chr12	108600000	133275309	12q24		612011	CELIAC13	Celiac disease, susceptibility to, 13		100188875		associated with rs3184504	{Celiac disease, susceptibility to, 13}, 612011 (2)	
chr12	108600000	133275309	12q24		608447	CIMT	Carotid intimal medial thickness		404677		161cM from pter; near SCARB1	Carotid intimal medial thickness, 608447 (2)	
chr12	108600000	133275309	12q24		607411	PDA1	Patent ductus arteriosus		100996949			{Patent ductus arteriosus, susceptibility to}, 607411 (2), Autosomal recessive	
chr12	108600000	120300000	12q24.1-q24.2		175850	POROK2, PPPD1	Porokeratosis 2, palmar, plantar, and disseminated		100196910		between D12S1613 and D12S1341	Porokeratosis 2, palmar, plantar, and disseminated, 175850 (2), Autosomal dominant	
chr12	108600000	133275309	12q24		608437	SLEB4	Systemic lupus erythematosus, susceptibility to, 4		404714			{Systemic lupus erythematosus, susceptibility to, 4}, 608437 (2)	
chr12	108600000	113900000	12q24.1		609261	STUT2	Stuttering, familial persistent, 2		100049543		max lod with PAH	Stuttering, familial persistent, 2, 609261 (2)	
chr12	108621894	108633893	12q24	12q24.11	600738	SELPLG, PSGL1	Selectin P ligand	SELPLG	6404	ENSG00000110876			Selplg (MGI:106689)
chr12	108645108	108759954	12q24.1	12q24.11	605269	CORO1C	Coronin 1C	CORO1C	23603	ENSG00000110880			Coro1c (MGI:1345964)
chr12	108782689	108857605	12q24.11	12q24.11	606778	SSH1, KIAA1298	Slingshot, Drosophila, homolog of, 1	SSH1	54434	ENSG00000084112			Ssh1 (MGI:2686240)
chr12	108880029	108901042	12q24	12q24.11	124050	DAO, DAMOX	D-amino-acid oxidase	DAO	1610	ENSG00000110887	tightly linked to SCA2	{Schizophrenia}, 181500 (2), Autosomal dominant	Dao (MGI:94859)
chr12	108908128	109021239	12q24.1	12q24.11	611699	SVOP	SV2-related protein	SVOP	55530	ENSG00000166111			Svop (MGI:1915916)
chr12	109023088	109088025	12q23-q24	12q24.11	612492	USP30	Ubiquitin-specific protease 30	USP30	84749	ENSG00000135093			Usp30 (MGI:2140991)
chr12	109088187	109093630	12q23.3	12q24.11	610602	ALKBH2, ABH2	AlkB, E. coli, homolog of, 2	ALKBH2	121642	ENSG00000189046			Alkbh2 (MGI:2141032)
chr12	109097593	109110992	12q23-q24.1	12q24.11	191525	UNG, DGU, HIGM5	Uracil-DNA glycosylase	UNG	7374	ENSG00000076248		Immunodeficiency with hyper IgM, type 5, 608106 (3), Autosomal recessive	Ung (MGI:109352)
chr12	109112665	109268225	12q24.1	12q24.11	601557	ACACB, ACCB, ACC2	Acetyl-Coenzyme A carboxylase, beta	ACACB	32	ENSG00000076555			Acacb (MGI:2140940)
chr12	109277977	109309405	12q24.1	12q24.11	609429	FOXN4	Forkhead box N4	FOXN4	121643	ENSG00000139445			Foxn4 (MGI:2151057)
chr12	109388276	109448370	12q24.11	12q24.11	614636	MYO1H	Myosin IH	MYO1H	283446	ENSG00000174527			Myo1h (MGI:1914674)
chr12	109448654	109477543	12q24.11	12q24.11	613421	KCTD10	Potassium channel tetramerization domain-containing 10	KCTD10	83892	ENSG00000110906			Kctd10 (MGI:2141207)
chr12	109477409	109543627	12q24.11	12q24.11	608047	UBE3B, BPIDS, KOS	Ubiquitin-protein ligase E3B	UBE3B	89910	ENSG00000151148		Kaufman oculocerebrofacial syndrome, 244450 (3), Autosomal recessive	Ube3b (MGI:1891295)
chr12	109553714	109573579	12q24	12q24.11	607568	MMAB	MMAB gene	MMAB	326625	ENSG00000139428		Methylmalonic aciduria, vitamin B12-responsive, due to defect in synthesis of adenosylcobalamin, cblB complementation type, 251110 (3), Autosomal recessive	Mmab (MGI:1924947)
chr12	109573460	109597269	12q24	12q24.11	251170	MVK, MVLK, POROK3	Mevalonate kinase	MVK	4598	ENSG00000110921		Hyper-IgD syndrome, 260920 (3), Autosomal recessive; Mevalonic aciduria, 610377 (3), Autosomal recessive; Porokeratosis 3, multiple types, 175900 (3), Autosomal dominant	Mvk (MGI:107624)
chr12	109783086	109833406	12q24.1	12q24.11	605427	TRPV4, VROAC, HMSN2C, CMT2C, SPSMA, SSQTL1, SMAL, BCYM3	Transient receptor potential cation channel, subfamily V, member 4 (vanilloid receptor-related osmotically activated channel)	TRPV4	59341	ENSG00000111199	mutation identified in 1 ANFH2 family	?Avascular necrosis of femoral head, primary, 2, 617383 (3), Autosomal dominant; Brachyolmia type 3, 113500 (3), Autosomal dominant; Digital arthropathy-brachydactyly, familial, 606835 (3), Autosomal dominant; Hereditary motor and sensory neuropathy, type IIc, 606071 (3), Autosomal dominant; Metatropic dysplasia, 156530 (3), Autosomal dominant; Parastremmatic dwarfism, 168400 (3), Autosomal dominant; SED, Maroteaux type, 184095 (3), Autosomal dominant; Scapuloperoneal spinal muscular atrophy, 181405 (3), Autosomal dominant; [Sodium serum level QTL 1], 613508 (3); Spinal muscular atrophy, distal, congenital nonprogressive, 600175 (3), Autosomal dominant; Spondylometaphyseal dysplasia, Kozlowski type, 184252 (3), Autosomal dominant	Trpv4 (MGI:1926945)
chr12	109850942	109880487	12q24.11	12q24.11	608949	GLTP	Glycolipid transfer protein	GLTP	51228	ENSG00000139433			Gltp (MGI:1929253)
chr12	109880666	109918068	12q24.1	12q24.11	612654	TCHP	Trichoplein	TCHP	84260	ENSG00000139437			Tchp (MGI:1925082)
chr12	109999168	110039431	12q24.11	12q24.11	615123	ANKRD13A	Ankyrin repeat domain-containing protein 13A	ANKRD13A	88455	ENSG00000076513			Ankrd13a (MGI:1915670)
chr12	110124334	110218794	12q24.13	12q24.11	605489	IFT81, DV1, CDV1R, SRTD19	Intraflagellar transport 81, Chlamydomonas, homolog of	IFT81	28981	ENSG00000122970		Short-rib thoracic dysplasia 19 with or without polydactyly 19, 617895 (3), Autosomal recessive	Ift81 (MGI:1098597)
chr12	110281226	110351092	12q23-q24.1	12q24.11	108740	ATP2A2, ATP2B, DAR	ATPase, Ca++ transporting, slow-twitch, cardiac muscle-2	ATP2A2	488	ENSG00000174437		Acrokeratosis verruciformis, 101900 (3), Autosomal dominant; Darier disease, 124200 (3), Autosomal dominant	Atp2a2 (MGI:88110)
chr12	110372899	110403729	12q24.11	12q24.11	606949	ANAPC7, APC7	Anaphase-promoting complex, subunit 7	ANAPC7	51434	ENSG00000196510			Anapc7 (MGI:1929711)
chr12	110434889	110450410	12q24.11	12q24.11	604225	ARPC3, ARC21	Actin-related protein 2/3 complex, subunit 3	ARPC3	10094	ENSG00000111229			Arpc3 (MGI:1928375)
chr12	110501650	110534631	12q24	12q24.11	608368	RAD9B	RAD9, S. pombe, homolog of, A	RAD9B	144715	ENSG00000151164			Rad9b (MGI:2385231)
chr12	110533244	110583258	12q24.1	12q24.11	609668	PPTC7, TAPP2C	PTC7 protein phosphatase, S. cerevisiae, homolog of	PPTC7	160760	ENSG00000196850			Pptc7 (MGI:2444593)
chr12	110614026	110649129	12q24.1	12q24.11	609863	TECT1, JBTS13	Tectonic family, member 1	TCTN1	79600	ENSG00000204852		Joubert syndrome 13, 614173 (3), Autosomal recessive	Tctn1 (MGI:3603820)
chr12	110648685	110704944	12q24.11	12q24.11	611227	HVCN1, HV1, VSOP	Hydrogen voltage-gated channel 1	HVCN1	84329	ENSG00000122986			Hvcn1 (MGI:1921346)
chr12	110708368	110742977	12q24.1-q24.2	12q24.11	176914	PPP1CC	Protein phosphatase-1, catalytic subunit, gamma isoform	PPP1CC	5501	ENSG00000186298			Gm5601 (MGI:3647492)
chr12	110910818	110920599	12q23-q24.3	12q24.11	160781	MYL2, CMH10	Myosin, light polypeptide-2, regulatory, cardiac, slow	MYL2	4633	ENSG00000111245		Cardiomyopathy, hypertrophic, 10, 608758 (3), Autosomal dominant	Myl2 (MGI:97272)
chr12	111360650	111369120	12q24.12	12q24.12	614239	FAM109A, SES1, IPIP27A	Family with sequence similarity 109, member A	PHETA1	144717	ENSG00000198324			Fam109a (MGI:2442708)
chr12	111405106	111451622	12q24	12q24.12	605093	SH2B3, LNK	SH2B adaptor protein 3	SH2B3	10019	ENSG00000111252		Erythrocytosis, somatic, 133100 (3); Myelofibrosis, somatic, 254450 (3); Thrombocythemia, somatic, 187950 (3)	Sh2b3 (MGI:893598)
chr12	111452213	111599675	12q24	12q24.12	601517	ATXN2, ATX2, SCA2, ASL13	Ataxin-2	ATXN2	6311	ENSG00000204842		{Amyotrophic lateral sclerosis, susceptibility to, 13}, 183090 (3), Autosomal dominant; {Parkinson disease, late-onset, susceptibility to}, 168600 (3), Isolated cases, Multifactorial; Spinocerebellar ataxia 2, 183090 (3), Autosomal dominant	Atxn2 (MGI:1277223)
chr12	111642145	111686022	12q24	12q24.12	604986	BRAP, BRAP2, IMP	BRCA1-associated protein	BRAP	8315	ENSG00000089234			Brap (MGI:1919649)
chr12	111686052	111757106	12q24.1	12q24.12	611181	ACAD10	Acyl-CoA dehydrogenase family, member 10	ACAD10	80724	ENSG00000111271			Acad10 (MGI:1919235)
chr12	111766886	111809984	12q24.2	12q24.12	100650	ALDH2	Aldehyde dehydrogenase 2 family, mitochondrial	ALDH2	217	ENSG00000111275		Alcohol sensitivity, acute, 610251 (3), Autosomal dominant; {Esophageal cancer, alcohol-related, susceptibility to} (3); {Hangover, susceptibility to}, 610251 (3), Autosomal dominant; {Sublingual nitroglycerin, susceptibility to poor response to} (3)	Aldh2 (MGI:99600)
chr12	111841977	111902224	12q24.12-q24.13	12q24.12-q24.13	606723	MAPKAPK5, PRAK	Mitogen-activated protein kinase-activated protein kinase 5	MAPKAPK5	8550	ENSG00000089022			Mapkapk5 (MGI:1333110)
chr12	112013339	112023219	Chr.12	12q24.13	602287	C12orf8, ERP28, ERP29	Endoplasmic reticulum lumenal protein 28	ERP29	10961	ENSG00000089248			Erp29 (MGI:1914647)
chr12	112026688	112108830	12q24.13	12q24.13	612755	MDM20, C12orf30	Mitochondrial distribution and morphology 20, yeast, homolog of	NAA25	80018	ENSG00000111300			Naa25 (MGI:2442563)
chr12	112125544	112153603	12q24.13	12q24.13	613197	TRAFD1, FLN29	TRAF-type zinc finger domain-containing 1	TRAFD1	10906	ENSG00000135148			Trafd1 (MGI:1923551)
chr12	112405180	112418849	12q	12q24.13	603703	RPL6	Ribosomal protein L6	RPL6	6128	ENSG00000089009			Rpl6l,Rpl6 (MGI:108057,MGI:3647789)
chr12	112418897	112509917	12q24.1	12q24.13	176876	PTPN11, PTP2C, SHP2, NS1, JMML, METCDS	Protein tyrosine phosphatase, nonreceptor-type, 11	PTPN11	5781	ENSG00000179295		LEOPARD syndrome 1, 151100 (3), Autosomal dominant; Leukemia, juvenile myelomonocytic, somatic, 607785 (3); Metachondromatosis, 156250 (3), Autosomal dominant; Noonan syndrome 1, 163950 (3), Autosomal dominant	Ptpn11 (MGI:99511)
chr12	112575096	112898880	12q24.1	12q24.13	612159	RPH3A, KIAA0985	Rabphilin 3A	RPH3A	22895	ENSG00000089169			Rph3a (MGI:102788)
chr12	112906776	112932189	12q24.2	12q24.13	164350	OAS1, OIAS	2',5'-oligoadenylate synthetase-1	OAS1	4938	ENSG00000089127		{Diabetes mellitus, type 1, susceptibility to}, 222100 (3), Autosomal recessive; {Viral infection, susceptibility to} (3)	Oas1g,Oas1a (MGI:2180860,MGI:97429)
chr12	112938432	112973250	12q24.2	12q24.13	603351	OAS3	2',5'-oligoadenylate synthetase-3	OAS3	4940	ENSG00000111331			Oas3 (MGI:2180850)
chr12	112978465	113011722	12q24.2	12q24.13	603350	OAS2	2',5'-oligoadenylate synthetase-2	OAS2	4939	ENSG00000111335			Oas2 (MGI:2180852)
chr12	113056710	113098027	12q24	12q24.13	602582	DTX1	Deltex, Drosophila, homolog of, 1	DTX1	1840	ENSG00000135144			Dtx1 (MGI:1352744)
chr12	113096514	113136247	12q23-q24	12q24.13	604118	RASAL1, RASAL	Ras protein activator-like 1	RASAL1	8437	ENSG00000111344			Rasal1 (MGI:1330842)
chr12	113157172	113185478	12q22-q23	12q24.13	611665	DDX54, DP97	Dead/H Box 54	DDX54	79039	ENSG00000123064			Ddx54 (MGI:1919240)
chr12	113221428	113298588	12q24.1	12q24.13	609666	TPCN1, TPC1, KIAA1169	Two-pore segment channel 1	TPCN1	53373	ENSG00000186815			Tpcn1 (MGI:2182472)
chr12	113298765	113335167	12q24	12q24.13	609841	SLC8B1, SLC24A6, NCKX6	Solute carrier family 8 member B1	SLC8B1	80024	ENSG00000089060			Slc8b1 (MGI:2180781)
chr12	113392444	113403886	12q24.13	12q24.13	182128	SDS, SDH	Serine dehydratase	SDS	10993	ENSG00000135094			Sds (MGI:98270)
chr12	113462888	113472071	12q24.31-q24.32	12q24.13	605992	LHX5	LIM homeo box protein 5	LHX5	64211	ENSG00000089116			Lhx5 (MGI:107792)
chr12	113816737	113966370	12q24.13-q24.21	12q24.13-q24.21	616444	RBM19, KIAA0682	RNA-binding motif protein 19	RBM19	9904	ENSG00000122965			Rbm19 (MGI:1921361)
chr12	113900000	133275309	12q24.2-q24.3		614422	CTRCT37, CCA5	Cataract 37		100861439		between D12S1718 and D12S1723	Cataract 37, autosomal dominant, 614422 (2), Autosomal dominant	
chr12	113900000	120300000	12q24.2		601407	NIDDM2	Diabetes mellitus, noninsulin-dependent, 2	NIDDM2	4813		no mutations found in HNF1A	Diabetes mellitus, noninsulin-dependent, 2, 601407 (2)	
chr12	113900000	133275309	12q24.2-q24.3		603416	RPL21P1, ALFN1, HALF1	Ribosomal protein L21 pseudogene 1	RPL21P1	6145				
chr12	114353910	114408707	12q24.1	12q24.21	601620	TBX5	T-box 5	TBX5	6910	ENSG00000089225		Holt-Oram syndrome, 142900 (3), Autosomal dominant	Tbx5 (MGI:102541)
chr12	114670253	114684163	12q24.1	12q24.21	601621	TBX3	T-box 3	TBX3	6926	ENSG00000135111		Ulnar-mammary syndrome, 181450 (3), Autosomal dominant	Tbx3 (MGI:98495)
chr12	115958575	116277218	12q24	12q24.21	608771	MED13L, THRAP2, PROSIT240, TRAP240L, KIAA1025, MRFACD	Mediator complex subunit 13-like	MED13L	23389	ENSG00000123066		Mental retardation and distinctive facial features with or without cardiac defects, 616789 (3), Autosomal dominant; Transposition of the great arteries, dextro-looped 1, 608808 (3), Autosomal dominant	Med13l (MGI:2670178)
chr12	116856143	116881426	12q24.2	12q24.22	603447	HRK, DP5	Harakiri	HRK	8739	ENSG00000135116			
chr12	116910948	117032497	12q24.23	12q24.22	609073	FBXW8, FBW8, FBXW6, FBW6, FBXO29, FBX29	F-box and WD40 domain protein 8	FBXW8	26259	ENSG00000174989			Fbxw8 (MGI:1923041)
chr12	117038922	117099489	12q24.2	12q24.22	611585	TESC, TSC	Tescalcin, mouse, homolog of	TESC	54997	ENSG00000088992			Tesc (MGI:1930803)
chr12	117143472	117190494	12q24.23	12q24.22	609095	FBXO21, FBX21, KIAA0875	F-box only protein 21	FBXO21	23014	ENSG00000135108			Fbxo21 (MGI:1924223)
chr12	117208141	117361801	12q24.2-q24.31	12q24.22	163731	NOS1	Nitric oxide synthase 1, neuronal	NOS1	4842	ENSG00000089250			Nos1 (MGI:97360)
chr12	117453011	117968556	12q24.2	12q24.22-q24.23	610737	KSR2	Kinase suppressor of RAS 2	KSR2	283455	ENSG00000171435			Ksr2 (MGI:3610315)
chr12	118016660	118033563	12q24.2-q24.3	12q24.23	600407	RFC5	Replication factor C5, 36.5kD (activator 1, 36.5kD)	RFC5	5985	ENSG00000111445			Rfc5 (MGI:1919401)
chr12	118135883	118145587	12q24.23	12q24.23	604591	PEBP1, PBP, RKIP	Phosphatidylethanolamine-binding protein 1	PEBP1	5037	ENSG00000089220			Pebp1 (MGI:1344408)
chr12	118149800	118372949	12q24.23	12q24.23	616711	TAOK3, JIK, DPK	TAO kinase 3	TAOK3	51347	ENSG00000135090			Taok3 (MGI:3041177)
chr12	118981494	119163050	12q24.23	12q24.23	613103	SRRM4, KIAA1853, NSR100	Serine/arginine repetitive matrix protein 4	SRRM4	84530	ENSG00000139767			Srrm4 (MGI:1916205)
chr12	119178789	119194745	12q24	12q24.23	608014	HSPB8, H11, E2IG1, DHMN2, CMT2L, HMN2A	Heat-shock 22-kD protein 8	HSPB8	26353	ENSG00000152137		Charcot-Marie-Tooth disease, axonal, type 2L, 608673 (3), Autosomal dominant; Neuropathy, distal hereditary motor, type IIA, 158590 (3), Autosomal dominant	Hspb8 (MGI:2135756)
chr12	119667863	119681623	12q24.1	12q24.23	602740	PRKAB1	Protein kinase, AMP-activated, noncatalytic, beta-1	PRKAB1	5564	ENSG00000111725			Prkab1 (MGI:1336167)
chr12	119685789	119877317	12q24.1-q24.3	12q24.23	605629	CIT, STK21, CRIK, MCPH17	Citron rho-interacting serine/threonine kinase	CIT	11113	ENSG00000122966		Microcephaly 17, primary, autosomal recessive, 617090 (3), Autosomal recessive	Cit (MGI:105313)
chr12	119989805	120094494	12q24.23	12q24.23	617002	BICDL1, BICDR1, CCDC64	BICD family-like cargo adaptor 1	BICDL1	92558	ENSG00000135127			Bicdl1 (MGI:1922915)
chr12	120095093	120117468	12q24.23	12q24.23	604199	RAB35	Ras-associated protein Rab35	RAB35	11021	ENSG00000111737			Rab35 (MGI:1924657)
chr12	120127209	120194709	12q24.2	12q24.23	605614	GCN1L1	General control of amino acid synthesis 1, yeast, homolog-like 1	GCN1	10985	ENSG00000089154			Gcn1l1 (MGI:2444248)
chr12	120196699	120201210	Chr.12	12q24.23	180510	RPLP0	Ribosomal phosphoprotein, large, P0	RPLP0	6175	ENSG00000089157			Rplp0 (MGI:1927636)
chr12	120210438	120265770	12q24	12q24.23	602505	PXN	Paxillin	PXN	5829	ENSG00000089159			Pxn (MGI:108295)
chr12	120290638	120313241	12q24.31	12q24.23-q24.31	604482	SIRT4, SIR2L4	Sirtuin, S. cerevisiae, homolog 4	SIRT4	23409	ENSG00000089163			Sirt4 (MGI:1922637)
chr12	120300000	125400000	12q24.31		612573	MPVQTL1	Mean platelet volume quantitative trait locus 1		100271867		associated with rs7961894	[Mean platelet volume QTL1], 612573 (2)	
chr12	120322110	120327788	12q23-q24.1	12q24.31	172410	PLA2G1B, PLA2A, PLA2, PPLA2	Phospholipase A2, group IB, pancreas	PLA2G1B	5319	ENSG00000170890			Pla2g1b (MGI:101842)
chr12	120339661	120369179	12q24.1-q24.31	12q24.31	603328	MSI1	Musashi, Drosophila, homolog of, 1	MSI1	4440	ENSG00000135097			Msi1 (MGI:107376)
chr12	120438089	120440741	12q24.2	12q24.31	602072	COX6A1, CMTRID	Cytochrome c oxidase, subunit VIa, polypeptide-1	COX6A1	1337	ENSG00000111775	pseudogenes on chr.7 and chr.6	Charcot-Marie-Tooth disease, recessive intermediate D, 616039 (3), Autosomal recessive	Cox6a1 (MGI:103099)
chr12	120443960	120446411	12q24.31	12q24.31	614943	TRIAP1, HSPC132	TP53-regulated inhibitor of apoptosis 1	TRIAP1	51499	ENSG00000170855			Triap1 (MGI:1916326)
chr12	120446437	120463752	12q24.31	12q24.31	617210	GATC	Glutamyl-tRNA amidotransferase, subunit C	GATC	283459	ENSG00000257218			Gatc (MGI:1923776)
chr12	120461667	120469754	12q24.31	12q24.31	601943	SRSF9, SFRS9, SRp30c	Splicing factor, serine/arginine-rich, 9	SRSF9	8683	ENSG00000111786			Srsf9 (MGI:104896)
chr12	120469856	120498494	12q24.2	12q24.31	601562	DYNLL1, DNCL1, DLC1, PIN	Dynein, light chain, LC8-type 1	DYNLL1	8655	ENSG00000088986	possible pseudogene on 14q24		Dynll1 (MGI:1861457)
chr12	120490337	120495945	12q24.31	12q24.31	616207	NRAV, DYNLL1AS1	Negative regulator of antiviral response, noncoding	NRAV	100506668		overlaps intron 1 of DYNLL1 in antisense orientation		
chr12	120503278	120534612	12q24.31	12q24.31	616359	COQ5	Coq5, S. cerevisiae, homolog of	COQ5	84274	ENSG00000110871			Coq5 (MGI:1098643)
chr12	120534328	120577593	12q24.31	12q24.31	615998	RNF10, KIAA0262	RING finger protein 10	RNF10	9921	ENSG00000022840			Rnf10 (MGI:1859162)
chr12	120579044	120581451	12q24.31	12q24.31	609992	POP5, HSPC004	Processing of precursor 5, S. cerevisiae, homolog of	POP5	51367	ENSG00000167272			Pop5 (MGI:2151221)
chr12	120687123	120701863	12q24.31	12q24.31	613802	MLEC, KIAA0152	Malectin	MLEC	9761	ENSG00000110917			Mlec (MGI:1924015)
chr12	120725737	120740007	12q22-qter	12q24.31	606885	ACADS, SCAD	Acyl-Coenzyme A dehydrogenase, C-2 to C-3 short chain	ACADS	35	ENSG00000122971		Acyl-CoA dehydrogenase, short-chain, deficiency of, 201470 (3), Autosomal recessive	Acads (MGI:87868)
chr12	120762509	120904351	12q24.31	12q24.31	608240	SPPL3, IMP2	Signal peptide peptidase-like 3	SPPL3	121665	ENSG00000157837			Sppl3 (MGI:1891433)
chr12	120977682	121002511	12q24.2	12q24.31	142410	HNF1A, TCF1, MODY3, IDDM20	HNF1 homeobox B	HNF1A	6927	ENSG00000135100		Diabetes mellitus, insulin-dependent, 20, 612520 (3); {Diabetes mellitus, insulin-dependent}, 222100 (3), Autosomal recessive; {Diabetes mellitus, noninsulin-dependent, 2}, 125853 (3), Autosomal dominant; Hepatic adenoma, somatic, 142330 (3); MODY, type III, 600496 (3), Autosomal dominant; Renal cell carcinoma, 144700 (3)	Hnf1a (MGI:98504)
chr12	121018881	121039241	12q24.2	12q24.31	603281	OASL, TRIP14	2',5'-oligoadenylate synthetase-like	OASL	8638	ENSG00000135114			Oasl1 (MGI:2180849)
chr12	121132818	121188031	12q24	12q24.31	602566	P2RX7, P2X7	Purinergic receptor P2X, ligand-gated ion channel, 7	P2RX7	5027	ENSG00000089041			P2rx7 (MGI:1339957)
chr12	121209860	121234105	12q24.32	12q24.31	600846	P2RX4, P2X4	Purinergic receptor P2X, ligand-gated ion channel, 4	P2RX4	5025	ENSG00000135124			P2rx4 (MGI:1338859)
chr12	121237691	121298307	12q24.2	12q24.31	615002	CAMKK2, KIAA0787, CAMKKB	Calcium/calmodulin-dependent protein kinase kinase 2, beta	CAMKK2	10645	ENSG00000110931			Camkk2 (MGI:2444812)
chr12	121308244	121354208	Chr.12	12q24.31	606948	ANAPC5, APC5	Anaphase-promoting complex, subunit 5	ANAPC5	51433	ENSG00000089053			Anapc5 (MGI:1929722)
chr12	121400082	121424351	12q23-q24.1	12q24.31	608299	RNF34, RFI	Ring finger protein 34	RNF34	80196	ENSG00000170633			Rnf34 (MGI:2153340)
chr12	121402287	121582267	12q24.31	12q24.31	609078	KDM2B, FBXL10, FBL10, CXXC2, JHDM1B	Lysine-specific demethylase 2B	KDM2B	84678	ENSG00000089094			Kdm2b (MGI:1354737)
chr12	121626549	121642039	12q24	12q24.31	610277	ORAI1, TMEM142A, CRACM1, IMD9, TAM2	ORAI calcium release-activated calcium modulator 1	ORAI1	84876	ENSG00000276045		Immunodeficiency 9, 612782 (3), Autosomal recessive; Myopathy, tubular aggregate, 2, 615883 (3), Autosomal dominant	Orai1 (MGI:1925542)
chr12	121712751	121782067	12q24.31	12q24.31	616551	TMEM120B	Transmembrane protein 120B	TMEM120B	144404	ENSG00000188735			Tmem120b (MGI:3603158)
chr12	121803664	121832655	12q24.31	12q24.31	611055	SETD1B, SET1B, KIAA1076	SET domain-containing protein 1B	SETD1B	23067	ENSG00000139718			
chr12	121839526	121888610	12q24-qter	12q24.31	609695	HPD	4-hydroxyphenylpyruvate dioxygenase	HPD	3242	ENSG00000158104		Hawkinsinuria, 140350 (3), Autosomal dominant; Tyrosinemia, type III, 276710 (3), Autosomal recessive	Hpd (MGI:96213)
chr12	121888730	121917864	12q24.2-q24.3	12q24.31	603146	PSMD9	Proteasome 26S subunit, non-ATPase, 9	PSMD9	5715	ENSG00000110801			Psmd9 (MGI:1914401)
chr12	122021885	122062043	12q24.1	12q24.31	601406	BCL7A, BCL7	B-cell CLL/lymphoma-7A	BCL7A	605	ENSG00000110987		B-cell non-Hodgkin lymphoma, high-grade (3)	Bcl7a (MGI:1924295)
chr12	122078727	122147346	12q21.31	12q24.31	608090	MLXIP, MONDOA, KIAA0867	MLX-interacting protein	MLXIP	22877	ENSG00000175727			Mlxip (MGI:2141183)
chr12	122172029	122174198	12q24.31	12q24.31	609509	IL31	Interleukin 31	IL31	386653	ENSG00000204671			
chr12	122203680	122208951	12q24.31	12q24.31	605864	B3GNT4	Beta-1,3-N-acetylglucosaminyltransferase 4	B3GNT4	79369	ENSG00000176383			B3gnt4 (MGI:2680208)
chr12	122207661	122227533	12q24.31	12q24.31	605219	SMAC, DIABLO, DFNA64	Second mitochondria-derived activator of caspase	DIABLO	56616	ENSG00000184047		Deafness, autosomal dominant 64, 614152 (3), Autosomal dominant	Diablo (MGI:1913843)
chr12	122229560	122266822	12q24.31	12q24.31	610034	VPS33A, MPSPS	Vacuolar protein sorting 33, yeast, homolog of, A	VPS33A	65082	ENSG00000139719		Mucopolysaccharidosis-plus syndrome, 617303 (3), Autosomal recessive	Vps33a (MGI:1924823)
chr12	122271431	122422955	12q24.3	12q24.31	179838	CLIP1, RSN, CYLN1, CLIP170	CAP-GLY domain containing linker protein 1	CLIP1	6249	ENSG00000130779			Clip1 (MGI:1928401)
chr12	122471598	122501183	12q24.31	12q24.31	616381	ZCCHC8	Zinc finger CCHC domain-containing protein 8	ZCCHC8	55596	ENSG00000033030			Zcchc8 (MGI:1917900)
chr12	122527105	122626408	12q24.31	12q24.31	607363	KNTC1, ROD, KIAA0166	Kinetochore-associated protein 1	KNTC1	9735	ENSG00000184445	previously assigned to chr.17		Kntc1 (MGI:2673709)
chr12	122701292	122703356	12q24.31	12q24.31	609163	HCAR2, GPR109A, HM74A	Hydroxycarboxylic acid receptor 2	HCAR2	338442	ENSG00000182782			Hcar2 (MGI:1933383)
chr12	122714755	122716891	12q24.31	12q24.31	606039	HCAR3, GPR109B, HM74, PUMAG	Hydroxycarboxylic acid receptor 3	HCAR3	8843	ENSG00000255398			
chr12	122727605	122730581	12q24.31	12q24.31	606923	HCAR1, GPR81, TAGPCR	Hydroxycarboxylic acid receptor 1	HCAR1	27198	ENSG00000196917			Hcar1 (MGI:2441671)
chr12	122752820	122771063	12q24.31	12q24.31	604550	DENR, DRP	Density-regulated protein	DENR	8562	ENSG00000139726			Denr (MGI:1915434)
chr12	122773620	122827384	12q24.31	12q24.31	613481	CCDC62, ERAP75	Coiled-coil domain-containing protein 62	CCDC62	84660	ENSG00000130783			Ccdc62 (MGI:2684996)
chr12	122834497	122862960	12q24.2-q24.3	12q24.31	605613	HIP1R, HIP12	Huntingtin-interacting protein 1-related protein	HIP1R	9026	ENSG00000130787			Hip1r (MGI:1352504)
chr12	122865327	122896164	12q24.31	12q24.31	610037	VPS37B	Vacuolar protein sorting 37, yeast, homolog of, B	VPS37B	79720	ENSG00000139722			Vps37b (MGI:1916724)
chr12	122917323	122975159	12q24	12q24.31	605453	ABCB9	ATP-binding cassette, subfamily B, member 9	ABCB9	23457	ENSG00000150967			Abcb9 (MGI:1861729)
chr12	122980059	122982912	12q24.31	12q24.31	607668	ARL6IP4	ADP-ribosylation-like factor 6 interacting protein 4	ARL6IP4	51329	ENSG00000182196			Arl6ip4 (MGI:1929500)
chr12	123233296	123257958	12q24.31	12q24.31	613541	C12orf65, COXPD7, SPG55	Chromosome 12 open reading frame 65	C12orf65	91574	ENSG00000130921		Combined oxidative phosphorylation deficiency 7, 613559 (3), Autosomal recessive; Spastic paraplegia 55, autosomal recessive, 615035 (3), Autosomal recessive	2810006K23Rik (MGI:1919900)
chr12	123152323	123244013	Chr.12	12q24.31	605501	MPHOSPH9, MPP9	M-phase phosphoprotein 9	MPHOSPH9	10198	ENSG00000051825			Mphosph9 (MGI:2443138)
chr12	123260969	123272315	12q24.31	12q24.31	602198	CDK2AP1, DOC1	CDK-associated protein 1 (deleted in oral cancer-1)	CDK2AP1	8099	ENSG00000111328			Cdk2ap1 (MGI:1202069)
chr12	123289108	123365208	12q24.31	12q24.31	614274	SBNO1	Strawberry notch, Drosophila, homolog of, 1	SBNO1	55206	ENSG00000139697			Sbno1 (MGI:2384298)
chr12	123409889	123436732	12q24.31	12q24.31	614093	RILPL2, RLP2	RAB-interacting lysosomal protein-like 2	RILPL2	196383	ENSG00000150977			Rilpl2 (MGI:1933112)
chr12	123471072	123533717	12q24.31	12q24.31	614092	RILPL1, RLP1, GOSPEL	RAB-interacting lysosomal protein-like 1	RILPL1	353116	ENSG00000188026			Rilpl1 (MGI:1922945)
chr12	123621022	123633775	12q24.31	12q24.31	606686	EIF2B1, EIF2BA	Eukaryotic translation initiation factor 2B, subunit 1	EIF2B1	1967	ENSG00000111361		Leukoencephalopathy with vanishing white matter, 603896 (3), Autosomal recessive	Eif2b1 (MGI:2384802)
chr12	123633738	123662603	12q24.31	12q24.31	601750	GTF2H3, TFB4	General transcription factor IIH, polypeptide 3	GTF2H3	2967	ENSG00000111358			Gtf2h3 (MGI:1277143)
chr12	123671107	123708404	12q24.31	12q24.31	613846	TCTN2, TECT2, MKS8, JBTS24	Tectonic family, member 2	TCTN2	79867	ENSG00000168778	mutation identified in 1 MKS8 family	Joubert syndrome 24, 616654 (3), Autosomal recessive; ?Meckel syndrome 8, 613885 (3), Autosomal recessive	Tctn2 (MGI:1915228)
chr12	123712317	123761754	12q24.3	12q24.31	611716	ATP6V0A2, WSS, ARCL2A	ATPase, H+ transporting, lysosomal, V0 subunit A2	ATP6V0A2	23545	ENSG00000185344		Cutis laxa, autosomal recessive, type IIA, 219200 (3), Autosomal recessive; Wrinkly skin syndrome, 278250 (3), Autosomal recessive	Atp6v0a2 (MGI:104855)
chr12	123761994	123935719	12q24.31	12q24.31	605884	DNAH10	Dynein, axonemal, heavy chain 10	DNAH10	196385	ENSG00000197653	previously assigned to 13q14		Dnah10 (MGI:1860299)
chr12	123973214	124015438	12q24.2	12q24.31	617890	ZNF664, ZFOC1	Zinc finger protein 664	ZNF664	144348	ENSG00000179195			Zfp664 (MGI:2442505)
chr12	124289163	124316023	12q24.31	12q24.31	615927	FAM101A, CFM2	Family with sequence similarity 101, member A	RFLNA	144347	ENSG00000178882			Rflna (MGI:1920371)
chr12	124324410	124567463	12q24	12q24.31	600848	NCOR2, SMRT	Nuclear receptor corepressor 2	NCOR2	9612	ENSG00000196498			Ncor2 (MGI:1337080)
chr12	124777627	124863972	12q24.31	12q24.31	601040	SCARB1, CD36L1, CLA1, HDLQTL6	Scavenger receptor class B, member 1 (CD36 antigen-like 1)	SCARB1	949	ENSG00000073060		[High density lipoprotein cholesterol level QTL6], 610762 (3)	Scarb1 (MGI:893578)
chr12	124911644	124915040	12q24.3	12q24.31	191340	UBC	Ubiquitin C	UBC	7316	ENSG00000150991			Ubc (MGI:98889)
chr12	124946823	124989124	12q24.31	12q24.31	617362	DHX37, KIAA1517	DEAH box polypeptide 37	DHX37	57647	ENSG00000150990			Dhx37 (MGI:3028576)
chr12	124993647	125051844	12q24.31	12q24.31	615627	BRI3BP	BRI3-binding protein	BRI3BP	140707	ENSG00000184992			Bri3bp (MGI:1924059)
chr12	125025442	125027422	12q24.31	12q24.31	615622	THRIL, LINC1992, BRI3BPAS1	TNF- and HNRNPL-related immunoregulatory long noncoding RNA	THRIL	102659353				
chr12	125065366	125143332	12q24.31	12q24.31	614364	AACS, ACSF1	Acetoacetyl-CoA synthetase	AACS	65985	ENSG00000081760			Aacs (MGI:1926144)
chr12	128793193	128823995	12q24.32	12q24.33	615806	SLC15A4, PHT1, PTR4	Solute carrier family 15 (oligopeptide transporter), member 4	SLC15A4	121260	ENSG00000139370			Slc15a4 (MGI:2140796)
chr12	129071725	129903666	12q24.3	12q24.33	611257	TMEM132D, KIAA1944, MOLT	Transmembrane protein 132D	TMEM132D	121256	ENSG00000151952			Tmem132d (MGI:3044963)
chr12	130162458	130165739	12q24.33	12q24.33	606147	FZD10	Frizzled, Drosophila, homolog of, 10	FZD10	11211	ENSG00000111432			Fzd10 (MGI:2136761)
chr12	130396132	130716360	12q24.33	12q24.33	611602	RIMBP2, KIAA0318	RIMS-binding protein 2	RIMBP2	23504	ENSG00000060709			Rimbp2 (MGI:2443235)
chr12	130337886	130412707	Chr.12	12q24.33	605571	PIWIL1	Piwi, Drosophila, homolog of	PIWIL1	9271	ENSG00000125207			Piwil1 (MGI:1928897)
chr12	130789599	130839273	12q24.33	12q24.33	132350	STX2, EPIM, STX2C, STX2B, STX2A	Epimorphin (syntaxin 2)	STX2	2054	ENSG00000111450			Stx2 (MGI:108059)
chr12	130871878	130877677	12q24.3	12q24.33	601179	RAN, ARA24	Ras-related nuclear protein	RAN	5901	ENSG00000132341			Ran (MGI:1333112)
chr12	130953906	131141468	12q24.33	12q24.33	613639	ADGRD1, GPR133, PGR25	Adhesion G protein-coupled receptor D1	ADGRD1	283383	ENSG00000111452			Adgrd1 (MGI:3041203)
chr12	131711086	131799737	12q24.33	12q24.33	601945	SFSWAP, SFRS8, SWAP	Splicing factor, suppressor-of-white-apricot family	SFSWAP	6433	ENSG00000061936			Sfswap (MGI:101760)
chr12	131828392	131851770	12q24.33	12q24.33	602285	MMP17	Matrix metalloproteinase 17	MMP17	4326	ENSG00000198598			Mmp17 (MGI:1346076)
chr12	131894733	131923161	12q24.3	12q24.33	603168	ULK1, UNC51	UNC51-like kinase 1	ULK1	8408	ENSG00000177169			Ulk1 (MGI:1270126)
chr12	131929199	131944039	12q24.33	12q24.33	608109	PUS1, MLASA1	Pseudourine synthase 1	PUS1	80324	ENSG00000177192		Myopathy, lactic acidosis, and sideroblastic anemia 1, 600462 (3), Autosomal recessive	Pus1 (MGI:1929237)
chr12	131949919	132080465	12q24.33	12q24.33	606265	EP400, TNRC12, KIAA1498	p400 SWI2/SNF2-related protein	EP400	57634	ENSG00000183495			Ep400 (MGI:1276124)
chr12	132144420	132152472	12q24.33	12q24.33	612819	NOC4L, NOC4	Nucleolar complex-associated protein 4, S. cerevisiae, homolog of	NOC4L	79050	ENSG00000184967			Noc4l (MGI:2140843)
chr12	132196371	132329318	12q24.33	12q24.33	606251	GALNT9, GALNACT9	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9	GALNT9	50614	ENSG00000182870	REc		Galnt9 (MGI:2677965)
chr12	132471570	132476637	12q24.3	12q24.33	601932	MUC8	Mucin 8, tracheobronchial	MUC8	100129528				
chr12	132618779	132623735	12q24.33	12q24.33	600844	P2RX2, P2X2, DFNA41	Purinergic receptor P2X, ligand-gated ion channel, 2	P2RX2	22953	ENSG00000187848		Deafness, autosomal dominant 41, 608224 (3), Autosomal dominant	P2rx2 (MGI:2665170)
chr12	132623757	132687523	12q24.3	12q24.33	174762	POLE1, CRCS12, FILS	Polymerase (DNA directed), epsilon-1	POLE	5426	ENSG00000177084		{Colorectal cancer, susceptibility to, 12}, 615083 (3), Autosomal dominant; FILS syndrome, 615139 (3), Autosomal recessive	Pole (MGI:1196391)
chr12	132687605	132704990	12q24.33	12q24.33	617399	PXMP2	Peroxisomal membrane protein 2	PXMP2	5827	ENSG00000176894			Pxmp2 (MGI:107487)
chr12	132710806	132722736	12q24.33	12q24.33	614939	PGAM5	Phosphogycerate mutase family, member 5	PGAM5	192111	ENSG00000247077			Pgam5 (MGI:1919792)
chr12	132725666	132761887	12q24.33	12q24.33	616062	ANKLE2, LEM4, KIAA0692, MCPH16	Ankyrin repeat- and LEM domain-containing protein 2	ANKLE2	23141	ENSG00000176915	mutation identified in 1 MCPH16 family	?Microcephaly 16, primary, autosomal recessive, 616681 (3), Autosomal recessive	Ankle2 (MGI:1261856)
chr12	132768908	132829130	Chr.12	12q24.33	602581	GOLGA3	Golgi autoantigen, golgin subfamily A, 3	GOLGA3	2802	ENSG00000090615			Golga3 (MGI:96958)
chr12	132840351	132887617	12q24.33	12q24.33	605209	CHFR	Checkpoint protein with FHA and ring-finger domains	CHFR	55743	ENSG00000072609			Chfr (MGI:2444898)
chr12	132986347	133027101	12q24.33	12q24.33	194537	ZNF26	Zinc finger protein-26 (KOX20)	ZNF26	7574	ENSG00000198393			
chr12	133079469	133107673	12q24.32-q24.33	12q24.33	604082	ZNF140	Zinc finger protein-140	ZNF140	7699	ENSG00000196387			
chr12	133130627	133159464	12q13-qter	12q24.33	194538	ZNF10, KOX1	Zinc finger protein-10 (KOX 1)	ZNF10	7556	ENSG00000256223	same 300kb fragment as ZNF26		
chr12	133181408	133207111	12q24.3	12q24.33	604753	ZNF268	Zinc finger protein 268	ZNF268	10795	ENSG00000090612			
chr12	0	133275309	Chr.12		191120	TUBAL1	Tubulin, alpha-like-1						
chr13	0	27200000	13pter-q12.13		610158	FECD2, FCD1	Corneal dystrophy, Fuchs endothelial, 2		100188278		max lod at D13S1304	Corneal dystrophy, Fuchs endothelial, 2, 610158 (2), Autosomal dominant	
chr13	4600000	10100000	13p12		180450	RNR1	Ribosomal RNA-1	RNR1	6052				
chr13	17700000	114364328	13q		604595	CLQTL1, CLF	Cholesterol level quantitative trait locus 1		54501			[Cholesterol level QTL 1], 604595 (2)	
chr13	18900000	22600000	13q12.11		612312	ADHD6	Attention deficit-hyperactivity disorder, susceptibility to, 6		100190791		max lod at rs1974047	{Attention deficit-hyperactivity disorder, susceptibility to, 6}, 612312 (2)	
chr13	18900000	54700000	13q12-q14		605844	ATOD5	Dermatitis, atopic, 5		117188		max lod at D13S218	{Dermatitis, atopic, susceptibility to, 5}, 605844 (2)	
chr13	18900000	22600000	13q12.11		609384	CFEOM3C, FEOM4	Fibrosis of extraocular muscles, congenital, 3C					Fibrosis of extraocular muscles, congenital, 3C, 609384 (2), Autosomal dominant	
chr13	18900000	31600000	13q12		608557	MCI2	Myocardial infarction, susceptibility to, 2		100233226		defined by 4-SNP haplotype HapA	{Myocardial infarction, susceptibility to, 2}, 608557 (2)	
chr13	19173769	19181851	13q11	13q12.11	602528	TUBA2	Tubulin, alpha 2	TUBA3C	7278	ENSG00000198033			
chr13	19422876	19561573	13q12.11	13q12.11	606791	TPTE2, TPIP	Transmembrane phosphoinositide 3-phosphatase and tensin homolog 2	TPTE2	93492	ENSG00000132958			Tpte (MGI:2446460)
chr13	19633647	19673458	13q12.11	13q12.11	611626	MPHOSPH8, TWA3	M-phase phosphoprotein 8	MPHOSPH8	54737	ENSG00000196199			Mphosph8 (MGI:1922589)
chr13	19674751	19783035	13q12.11	13q12.11	612408	PSPC1, PSP1	Paraspeckle component 1	PSPC1	55269	ENSG00000121390			Pspc1 (MGI:1913895)
chr13	19823481	19863635	13q12.11	13q12.11	616443	ZMYM5, ZNF237, ZNF198L1	Zinc finger, MYM-type 5	ZMYM5	9205	ENSG00000132950			Zmym5 (MGI:3041170)
chr13	19957405	20091844	13q12.11	13q12.11	602221	ZMYM2, ZNF198, RAMP, FIM	Zinc finger, MYM-type 2	ZMYM2	7750	ENSG00000121741			Zmym2 (MGI:1923257)
chr13	20138251	20161326	13q11	13q12.11	121015	GJA3, CX46, CZP3, CAE3, CTRCT14	Gap junction protein, alpha-3, 46kD (connexin 46)	GJA3	2700	ENSG00000121743		Cataract 14, multiple types, 601885 (3), Autosomal dominant	Gja3 (MGI:95714)
chr13	20187462	20192974	13q11-q12	13q12.11	121011	GJB2, CX26, DFNB1A, PPK, DFNA3A, KID, HID	Gap junction protein, beta-2, 26kD (connexin 26)	GJB2	2706	ENSG00000165474		Bart-Pumphrey syndrome, 149200 (3), Autosomal dominant; Deafness, autosomal dominant 3A, 601544 (3), Autosomal dominant; Deafness, autosomal recessive 1A, 220290 (3), Autosomal recessive; Hystrix-like ichthyosis with deafness, 602540 (3), Autosomal dominant; Keratitis-ichthyosis-deafness syndrome, 148210 (3), Autosomal dominant; Keratoderma, palmoplantar, with deafness, 148350 (3), Autosomal dominant; Vohwinkel syndrome, 124500 (3), Autosomal dominant	Gjb2 (MGI:95720)
chr13	20221961	20232394	13q12	13q12.11	604418	GJB6, CX30, DFNA3B, DFNB1B, ECTD2, HED2	Gap junction protein, beta-6 (connexin-30)	GJB6	10804	ENSG00000121742		Deafness, autosomal dominant 3B, 612643 (3), Autosomal dominant; Deafness, autosomal recessive 1B, 612645 (3), Autosomal recessive; Deafness, digenic GJB2/GJB6, 220290 (3), Autosomal recessive; Ectodermal dysplasia 2, Clouston type, 129500 (3), Autosomal dominant	Gjb6 (MGI:107588)
chr13	20403666	20525872	13q12.11	13q12.11	609877	CRYL1	Crystallin, lambda-1	CRYL1	51084	ENSG00000165475			Cryl1 (MGI:1915881)
chr13	20566445	20691436	13q12.1	13q12.11	600595	IFT88, D13S1056E, TG737	Intraflagellar transport 88, Chlamydomonas, homolog of	IFT88	8100	ENSG00000032742			Ift88 (MGI:98715)
chr13	20701104	20723099	13p11	13q12.11	607587	IL17D	Interleukin 17D	IL17D	53342	ENSG00000172458	?associated with Hodgkin lymphoma		Il17d (MGI:2446510)
chr13	20728930	20773957	13q12.11	13q12.11	617793	EEF1AKMT1, N6AMT2	EEF1A lysine methyltransferase 1	EEF1AKMT1	221143	ENSG00000150456			Eef1akmt1 (MGI:1915293)
chr13	20973035	21061582	13q11-q12	13q12.11	604861	LATS2	Large tumor suppressor, Drosophila, homolog of, 2	LATS2	26524	ENSG00000150457			Lats2 (MGI:1354386)
chr13	21140513	21149084	13q12.11	13q12.11	602949	SAP18	Sin3-associated polypeptide, 18kD	SAP18	10284	ENSG00000150459			Sap18b,Sap18 (MGI:3704317,MGI:1277978)
chr13	21176232	21179083	13q12.11	13q12.11	611997	MRP63	Mitochondrial ribosomal protein 63	MRPL57	78988	ENSG00000173141	10 pseudogenes		Mrpl57 (MGI:1915090)
chr13	21492688	21604215	13q12.11	13q12.11	610632	MICU2, EFHA1	Mitochondrial calcium uptake protein 2	MICU2	221154	ENSG00000165487			Micu2 (MGI:1915764)
chr13	21671075	21704500	13q11-q12	13q12.11	600921	FGF9, SYNS3	Fibroblast growth factor-9 (glia-activating factor)	FGF9	2254	ENSG00000102678		Multiple synostoses syndrome 3, 612961 (3), Autosomal dominant	Fgf9 (MGI:104723)
chr13	22600000	24900000	13q12.12		614166	MYP20	Myopia 20, autosomal dominant		100682326		associated with rs9318086	Myopia 20, autosomal dominant, 614166 (2)	
chr13	23160307	23325164	13q12	13q12.12	608896	SGCG, LGMD2C, DMDA1, SCG3	Sarcoglycan, gamma (35kD dystrophin-associated glycoprotein)	SGCG	6445	ENSG00000102683		Muscular dystrophy, limb-girdle, type 2C, 253700 (3), Autosomal recessive	Sgcg (MGI:1346524)
chr13	23328822	23433727	13q12	13q12.12	604490	SACS, ARSACS	Sacsin	SACS	26278	ENSG00000151835		Spastic ataxia, Charlevoix-Saguenay type, 270550 (3), Autosomal recessive	
chr13	23570247	23676104	13q12.11-q12.3	13q12.12	606122	TAJ, TROY	Toxicity and JNK inducer	TNFRSF19	55504	ENSG00000127863			Tnfrsf19 (MGI:1352474)
chr13	23730188	23889447	13q12	13q12.12	602241	MIPEP, COXPD31	Mitochondrial intermediate peptidase	MIPEP	4285	ENSG00000027001		Combined oxidative phosphorylation deficiency 31, 617228 (3), Autosomal recessive	Mipep (MGI:1917728)
chr13	23888886	23892103	13q12.12	13q12.12	617122	C1QTNF9BAS1, PCOTH	C1QTNF9B antisense RNA 1	PCOTH	542767	ENSG00000205861			
chr13	23891098	23897501	13q12.12	13q12.12	614148	C1QTNF9B, CTRP9B	C1q- and tumor necrosis factor-related protein 9B	C1QTNF9B	387911	ENSG00000205863			C1qtnf9 (MGI:3045252)
chr13	23979625	24307073	13q12.12	13q12.12	613324	SPATA13, ASEF2	Spermatogenesis-associated protein 13	SPATA13	221178	ENSG00000182957			Spata13 (MGI:104838)
chr13	24307165	24322530	13q12.12	13q12.12	614285	C1QTNF9A, CTRP9, C1QTNF9	C1q- and tumor necrosis factor-related protein 9A	C1QTNF9	338872	ENSG00000240654			
chr13	24420929	24512992	13q11	13q12.12	607519	PARP4, ADPRTL1, VPARP, KIAA0177	Poly(ADP-ribose) polymerase 4	PARP4	143	ENSG00000102699			Parp4 (MGI:2685589)
chr13	24680410	24711784	13q12.1-q12.3	13q12.12	182360	ATP12A, ATP1AL1	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	ATP12A	479	ENSG00000075673			Atp12a (MGI:1926943)
chr13	24747640	24888815	13q12.1	13q12.12	605793	RNF17	RING finger protein-17	RNF17	56163	ENSG00000132972			Rnf17 (MGI:1353419)
chr13	24882273	24922888	13q12.2	13q12.12-q12.13	609279	CENPJ, CPAP, MCPH6, SCKL4	Centromeric protein J	CENPJ	55835	ENSG00000151849	mutation identified in 1 SCKL4 family	Microcephaly 6, primary, autosomal recessive, 608393 (3), Autosomal recessive; ?Seckel syndrome 4, 613676 (3), Autosomal recessive	Cenpj (MGI:2684927)
chr13	25161678	25172450	13q12.13	13q12.13	614659	FAM123A, AMER2	Family with sequence similarity 123, member A (APC membrane recruitment protein 2)	AMER2	219287	ENSG00000165566			Amer2 (MGI:1919375)
chr13	25246200	25287565	13q12	13q12.13	603561	MTMR6	Myotubularin-related protein 6	MTMR6	9107	ENSG00000139505			Mtmr6 (MGI:2145637)
chr13	25301083	25349794	13q12.1	13q12.13	607615	NUP58, NUPL1, KIAA0410	Nucleoporin 58kDa	NUP58	9818	ENSG00000139496			Nupl1 (MGI:1919094)
chr13	25372010	26025850	13q12	13q12.13	605870	ATP8A2, ATPIB, CAMRQ4	ATPase, class I, type 8A, member 2	ATP8A2	51761	ENSG00000132932		?Cerebellar ataxia, mental retardation, and dysequilibrium syndrome 4, 615268 (3), Autosomal recessive	Atp8a2 (MGI:1354710)
chr13	26044596	26051059	13q12.13	13q12.13	617324	SHISA2, C13orf13, TMEM46	Shisa family, member 2	SHISA2	387914	ENSG00000180730			Shisa2 (MGI:2444716)
chr13	26132114	26223084	13q12.11	13q12.13	604242	RNF6	RING finger protein-6	RNF6	6049	ENSG00000127870		Esophageal carcinoma, somatic, 133239 (3)	Rnf6 (MGI:1921382)
chr13	26254103	26405237	13q12	13q12.13	603184	CDK8	Cyclin-dependent kinase 8	CDK8	1024	ENSG00000132964			Cdk8 (MGI:1196224)
chr13	26539138	26688944	13q12	13q12.13	605068	WASF3, WAVE3, SCAR3	WAS protein family member 3	WASF3	10810	ENSG00000132970			Wasf3 (MGI:2658986)
chr13	26755199	26760785	13q12	13q12.13	600752	GPR12	G protein-coupled receptor-12	GPR12	2835	ENSG00000132975			Gpr12 (MGI:101909)
chr13	27066149	27171895	13q12.13	13q12.13	603091	USP12, UBH1	Ubiquitin-specific protease 12	USP12	219333	ENSG00000152484			Usp12 (MGI:1270128)
chr13	27200000	39500000	13q12.2-q13		157900	MBS, MBS1	Moebius syndrome	MBS1	4156			?Moebius syndrome, 157900 (2), Autosomal dominant, Isolated cases	
chr13	27251554	27256567	13q12.2	13q12.2	603636	RPL21, HYPT12	Ribosomal protein L21	RPL21	6144	ENSG00000122026		Hypotrichosis 12, 615885 (3), Autosomal dominant	Rpl21 (MGI:1278340)
chr13	27270326	27273766	13q12.2	13q12.2	612403	RASL11A	RAS-like, family 11, member A	RASL11A	387496	ENSG00000122035			Rasl11a (MGI:1916145)
chr13	27424543	27435708	13q12.3-q13.1	13q12.2	600860	GTF3A, TFIIIA	General transcription factor IIIA	GTF3A	2971	ENSG00000122034			Gtf3a (MGI:1913846)
chr13	27545912	27621105	13q12.2	13q12.2	609733	LNX2, PDZRN1	Ligand of numb protein X2	LNX2	222484	ENSG00000139517			Lnx2 (MGI:2155959)
chr13	27620742	27667421	13q12.2	13q12.2	613715	POLR1D, RPA16, RPAC2, TCS2	Polymerase I, RNA, subunit D	POLR1D	51082	ENSG00000186184		Treacher Collins syndrome 2, 613717 (3), Autosomal recessive, Autosomal dominant	Polr1d (MGI:108403)
chr13	27792642	27793951	13q12.2	13q12.2	616542	GSX1, GSH1	GS homeobox 1	GSX1	219409	ENSG00000169840			Gsx1 (MGI:95842)
chr13	27919981	27926313	13q12.1	13q12.2	600733	PDX1, IPF1, MODY4, PAGEN1	Pancreas/duodenum homeobox protein 1	PDX1	3651	ENSG00000139515		{Diabetes mellitus, type II, susceptibility to}, 125853 (3), Autosomal dominant; MODY, type IV, 606392 (3); Pancreatic agenesis 1, 260370 (3), Autosomal recessive	Pdx1 (MGI:102851)
chr13	27960917	27969367	13q12.3	13q12.2	600297	CDX2, CDX3	Caudal type homeo box transcription factor 2	CDX2	1045	ENSG00000165556			Cdx2 (MGI:88361)
chr13	27978105	27988636	13q12.2	13q12.2	615804	URAD	Ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase	URAD	646625	ENSG00000183463			Urad (MGI:3647519)
chr13	28003273	28100591	13q12	13q12.2	136351	FLT3	fms-related tyrosine kinase-3	FLT3	2322	ENSG00000122025		Leukemia, acute lymphoblastic, somatic, 613065 (3); Leukemia, acute myeloid, reduced survival in, somatic, 601626 (3); Leukemia, acute myeloid, somatic, 601626 (3)	Flt3 (MGI:95559)
chr13	28135020	28295337	13q12.2	13q12.2	617448	PAN3	PABP-dependent poly(A) nuclease 3	PAN3	255967	ENSG00000152520			Pan3 (MGI:1919837)
chr13	28300345	28495127	13q12	13q12.3	165070	FLT1	fms-related tyrosine kinase-1 (vascular endothelial growth factor/vascular permeability factor receptor)	FLT1	2321	ENSG00000102755	150kb from FLT3		Flt1 (MGI:95558)
chr13	28659003	28678956	13q12.3	13q12.3	613386	POMP, UMP1	Proteasome maturation protein	POMP	51371	ENSG00000132963		Keratosis linearis with ichthyosis congenita and sclerosing keratoderma, 601952 (3), Autosomal recessive	Pomp (MGI:1913787)
chr13	28700079	28719012	13q12.3	13q12.3	616764	SLC46A3	Solute carrier family 46, member 3	SLC46A3	283537	ENSG00000139508			Slc46a3 (MGI:1918956)
chr13	29509409	29595687	13q12.3	13q12.3	104615	SLC7A1, ATRC1	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 1	SLC7A1	6541	ENSG00000139514	distal to ATP1AL1		Slc7a1 (MGI:88117)
chr13	29764407	29850682	13q12-q13	13q12.3	604711	UBL3	Ubiquitin-like 3	UBL3	5412	ENSG00000122042			Ubl3 (MGI:1344373)
chr13	30200025	30307500	13q12.3	13q12.3	614764	KATNAL1	Katanin p60 subunit A-like 1	KATNAL1	84056	ENSG00000102781			Katnal1 (MGI:2387638)
chr13	30457915	30617596	13q12	13q12.3	163905	HMGB1, HMG1	High-mobility group box 1 (high-mobility group (nonhistone chromosomal) protein 1)	HMGB1	3146	ENSG00000189403			
chr13	30617678	30660769	13q12.3	13q12.3	617470	USPL1	Ubiquitin-specific peptidase-like 1	USPL1	10208	ENSG00000132952			Uspl1 (MGI:2442342)
chr13	30713477	30764427	13q12	13q12.3	603700	ALOX5AP, FLAP	Arachidonate 5-lipoxygenase-activating protein	ALOX5AP	241	ENSG00000132965		{Stroke, susceptibility to}, 601367 (3), Multifactorial	Alox5ap (MGI:107505)
chr13	31134973	31162387	13q12.3	13q12.3	610703	HSPH1, HSP105, KIAA0201	Heat-shock 105/110kD protein 1	HSPH1	10808	ENSG00000120694			Hsph1 (MGI:105053)
chr13	31199974	31332275	13q12.3	13q12.3	610308	B3GLCT, B3GALTL, B3GTL	Beta 3-glucosyltransferase	B3GLCT	145173	ENSG00000187676		Peters-plus syndrome, 261540 (3), Autosomal recessive	B3glct (MGI:2685903)
chr13	31600000	54700000	13q13-q14.3		600631	ENUR1	Enuresis, nocturnal, 1	ENUR1	2031			Enuresis, nocturnal, 1, 600631 (2), Autosomal dominant	
chr13	31600000	33400000	13q13.1		612089	HPRHP	Hypophosphatemic rickets and hyperparathyroidism		100188880		?due to altered KLOTHO expression	Hypophosphatemic rickets and hyperparathyroidism, 612089 (2), Autosomal dominant	
chr13	31739541	31802871	13q13.1	13q13.1	606655	LGR8, GREAT	Leucine-rich repeat-containing G protein-coupled receptor 8	RXFP2	122042	ENSG00000133105			Rxfp2 (MGI:2153463)
chr13	32031299	32299121	13q13.1	13q13.1	614818	FRY, C13orf14	Furry, Drosophila, homolog of	FRY	10129	ENSG00000073910			Fry (MGI:2443895)
chr13	32315479	32399671	13q12.3	13q13.1	600185	BRCA2, FANCD1, BROVCA2, GLM3, PNCA2	BRCA2 gene	BRCA2	675	ENSG00000139618		{Breast cancer, male, susceptibility to}, 114480 (3), Autosomal dominant; {Breast-ovarian cancer, familial, 2}, 612555 (3), Autosomal dominant; Fanconi anemia, complementation group D1, 605724 (3), Autosomal recessive; {Glioblastoma 3}, 613029 (3), Autosomal recessive; {Medulloblastoma}, 155255 (3), Autosomal recessive, Autosomal dominant; {Pancreatic cancer 2}, 613347 (3); {Prostate cancer}, 176807 (3), Autosomal dominant; Wilms tumor, 194070 (3), Autosomal dominant, Somatic mutation	Brca2 (MGI:109337)
chr13	32432487	32542709	13q13.1	13q13.1	615788	N4BP2L2, PFAAP5	NEDD4-binding protein 2-like 2	N4BP2L2	10443	ENSG00000244754			N4bp2l2 (MGI:2687207)
chr13	32586426	32778019	13q12.3	13q13.1	605333	AS3	Androgen-induced prostate proliferative shutoff-associated protein	PDS5B	23047	ENSG00000083642			Pds5b (MGI:2140945)
chr13	33016062	33066144	13q12	13q13.1	604824	KL, KLOTHO	Klotho	KL	9365	ENSG00000133116		{Coronary artery disease, susceptibility to} (3); Tumoral calcinosis, hyperphosphatemic, 211900 (3), Autosomal recessive	Kl (MGI:1101771)
chr13	33103134	33676834	13q12.3	13q13.1-q13.2	609866	STARD13, DLC2	Start domain-containing protein 13	STARD13	90627	ENSG00000133121			Stard13 (MGI:2385331)
chr13	33818068	33973945	13q12.3-q13	13q13.2	600405	RFC3	Replication factor C3, 38kD (activator 1, 38kD)	RFC3	5983	ENSG00000133119			Rfc3 (MGI:1916513)
chr13	34900000	39500000	13q13.3		612796	IBD27	Inflammatory bowel disease 27		100302059			{Inflammatory bowel disease 27}, 612796 (2)	
chr13	34900000	72800000	13q13.3-q21		263450	PAPA5	Polydactyly, postaxial, type A5		101241897		between D13S1288 and D13S632	Polydactyly, postaxial, type A5, 263450 (2), Autosomal recessive	
chr13	34942286	35672736	13q13.2	13q13.3	604889	NBEA	Neurobeachin	NBEA	26960	ENSG00000172915	site of FRA13A		Nbea (MGI:1347075)
chr13	35473788	35476694	13q13	13q13.3	601280	MAB21L1	mab-21 (C. elegans)-like 1	MAB21L1	4081	ENSG00000180660			Mab21l1 (MGI:1333773)
chr13	35768651	36132019	13q13	13q13.3	604742	DCLK1, DCAMKL1, CLICK1, CL1, KIAA0369	Doublecortin-like kinase 1	DCLK1	9201	ENSG00000133083			Dclk1 (MGI:1330861)
chr13	36168207	36214614	13q13.3	13q13.3	616066	SOHLH2	Spermatogenesis- and oogenesis-specific basic helix-loop-helix protein 2	SOHLH2	54937	ENSG00000120669			
chr13	36301637	36370179	13q12.3	13q13.3	607111	SPG20	Spartin	SPART	23111	ENSG00000133104		Troyer syndrome, 275900 (3), Autosomal recessive	
chr13	36430487	36442881	13q12.3-q13	13q13.3	604036	CCNA1	Cyclin A1	CCNA1	8900	ENSG00000133101			Ccna1 (MGI:108042)
chr13	36819201	36829602	13q14	13q13.3	601861	RFXAP	Regulatory factor X-associated protein	RFXAP	5994	ENSG00000133111		Bare lymphocyte syndrome, type II, complementation group D, 209920 (3), Autosomal recessive	Rfxap (MGI:2180854)
chr13	36844830	36920720	13q12-q14	13q13.3	603295	MADH9, SMAD9, MADH6, PPH2	Mothers against decapentaplegic, Drosophila, homolog of, 9	SMAD9	4093	ENSG00000120693		Pulmonary hypertension, primary, 2, 615342 (3), Autosomal dominant	Smad9 (MGI:1859993)
chr13	36949769	36999366	13q13.3	13q13.3	604565	ALG5	Alg5, S. cerevisiae, homolog of	ALG5	29880	ENSG00000120697			Alg5 (MGI:1913498)
chr13	37000372	37009613	13q13.1	13q13.3	606019	EXOSC8, OIP2, RRP43, PCH1C	Exosome component 8	EXOSC8	11340	ENSG00000120699		Pontocerebellar hypoplasia, type 1C, 616081 (3), Autosomal recessive	Exosc8 (MGI:1916889)
chr13	37009311	37059713	13q13.3	13q13.3	613417	FAM48A, P38IP, C13orf19	Family with sequence similarity 48, member A	SUPT20H	55578	ENSG00000102710			
chr13	37562581	37598843	13q13.3	13q13.3	608777	POSTN, OSF2, PN	Periostin	POSTN	10631	ENSG00000133110			Postn (MGI:1926321)
chr13	37632062	37870424	13q13.1-q13.2	13q13.3	603651	TRPC4, TRP4	Transient receptor potential cation channel, subfamily C, member 4	TRPC4	7223	ENSG00000133107			Trpc4 (MGI:109525)
chr13	38349770	38363006	13q13.3	13q13.3	610553	UFM1, HLD14	Ubiquitin-fold modifier 1	UFM1	51569	ENSG00000120686		Leukodystrophy, hypomyelinating, 14, 617899 (3), Autosomal recessive	Ufm1 (MGI:1915140)
chr13	38687035	38887130	13q13.3	13q13.3	608945	FREM2, FRASRS2	FRAS1-related extracellular matrix protein 2	FREM2	341640	ENSG00000150893		Fraser syndrome 2, 617666 (3), Autosomal recessive	Frem2 (MGI:2444465)
chr13	38965924	38990858	13q13	13q13.3	608327	STOML3, SRO	Stomatin-like protein 3	STOML3	161003	ENSG00000133115			Stoml3 (MGI:2388072)
chr13	39342891	39603218	13q12	13q13.3-q14.1	606710	LHFP	Lipoma HMGIC fusion partner	LHFPL6	10186	ENSG00000183722			Lhfp (MGI:1920048)
chr13	39500000	54700000	13q14		606643	BMIQ2	Body mass index quantitative trait locus 2	BMIQ2	192149		max lod at D13S257	[Body mass index QTL2], 606643 (2)	
chr13	39500000	54700000	13q14		612110	BMND9	Bone mineral density quantitative trait locus 9		100188882		associated with rs9594759	[Bone mineral density QTL 9], 612110 (2)	
chr13	39500000	54700000	13q14		109543	CLLS2, D13S25, DBM	Leukemia, chronic lymphocytic, susceptibility to, 2		8101		>530kb telomeric to RB1	{Leukemia, chronic lymphocytic, susceptibility to, 2}, 109543 (2), Autosomal dominant	
chr13	39500000	54700000	13q14		613884	DEL13q14, C13DELq14	Chromosome 13q14 deletion syndrome					Chromosome 13q14 deletion syndrome, 613884 (4), Autosomal dominant, Isolated cases	
chr13	39500000	54700000	13q14		109350	GER	Gastroesophageal reflux		59330			Gastroesophageal reflux, 109350 (2), Autosomal dominant	
chr13	39500000	44600000	13q14.11		613407	LPRS6	Leprosy, susceptibility to, 6		100499166		associated with rs9533634 and rs3764147	{Leprosy, susceptibility to, 6}, 613407 (2)	
chr13	39500000	54700000	13q14		601499	RIEG2, RGS2	Rieger syndrome, type 2	RIEG2	6012			Rieger syndrome, type 2, 601499 (2), Autosomal dominant	
chr13	39500000	54700000	13q14		607584	SPG24	Spastic paraplegia 24, autosomal recessive	SPG24	338090			Spastic paraplegia 24, autosomal recessive, 607584 (2), Autosomal recessive	
chr13	39500000	54700000	13q14		194370	XRS	X-ray sensitivity		8102				
chr13	39655626	39791664	13q13.3	13q14.11	606977	COG6, COD2, KIAA1134, CDG2L, SHNS	Component of oligomeric golgi complex 6	COG6	57511	ENSG00000133103		Congenital disorder of glycosylation, type IIl, 614576 (3), Autosomal recessive; Shaheen syndrome, 615328 (3), Autosomal recessive	Cog6 (MGI:1914792)
chr13	40555663	40666596	13q14.1	13q14.11	136533	FOXO1A, FKHR	Forkhead box O1A (forkhead in rhabdomyosarcoma)	FOXO1	2308	ENSG00000150907	chimeric with PAX3 in t(2;13); fuses with PAX3	Rhabdomyosarcoma, alveolar, 268220 (3), Autosomal recessive	Foxo1 (MGI:1890077)
chr13	40729295	40771210	13q13.3	13q14.11	611992	MRPS31	Mitochondrial ribosomal protein S31	MRPS31	10240	ENSG00000102738	4 pseudogenes		Mrps31 (MGI:1913153)
chr13	40789410	40812459	13q14	13q14.11	603861	SLC25A15, ORNT1, HHH	Solute carrier family 25 (mitochondrial carrier), member 15 (ornithine transporter 1)	SLC25A15	10166	ENSG00000102743	with deficiency of factors VII and X in 3 unrelated cases	Hyperornithinemia-hyperammonemia-homocitrullinemia syndrome, 238970 (3), Autosomal recessive	Slc25a15 (MGI:1342274)
chr13	40931918	41061383	13q14.11	13q14.11	189973	ELF1, RIA1, EFTUD1	E74-like factor 1	ELF1	1997	ENSG00000120690			Elf1 (MGI:107180)
chr13	41061256	41084011	13q14.11	13q14.11	604981	WBP4, FBP21	WW domain-containing binding protein 4	WBP4	11193	ENSG00000120688			Wbp4 (MGI:109568)
chr13	41127572	41132799	13q14.11	13q14.11	617738	KBTBD6	Kelch repeat- and BTB domain-containing protein 6	KBTBD6	89890	ENSG00000165572			Kbtbd6 (MGI:3643058)
chr13	41189833	41194583	13q14.11	13q14.11	617739	KBTBD7	Kelch repeat- and BTB domain-containing protein 7	KBTBD7	84078	ENSG00000120696			Kbtbd7 (MGI:2685141)
chr13	41216368	41312037	13q14.1-q14.3	13q14.11	604601	MTRF1	Translational release factor, mitochondrial, 1	MTRF1	9617	ENSG00000120662			Mtrf1 (MGI:2384815)
chr13	41457405	41470876	13q12-q14	13q14.11	610077	RGC32	Response gene to complement 32	RGCC	28984	ENSG00000102760			Rgcc (MGI:1913464)
chr13	41566824	41961745	13q14.11	13q14.11	617509	VWA8, KIAA0564	von Willebrand factor A domain-containing protein 8	VWA8	23078	ENSG00000102763			Vwa8 (MGI:1919008)
chr13	42040035	42256583	13q14.11	13q14.11	604071	DGKH	Diacylglycerol kinase, eta, 130kD	DGKH	160851	ENSG00000102780			Dgkh (MGI:2444188)
chr13	42271469	42323266	13q14.11	13q14.11	604696	AKAP11, AKAP220	A-kinase anchor protein 11	AKAP11	11215	ENSG00000023516			Akap11 (MGI:2684060)
chr13	42562735	42608012	13q14	13q14.11	602642	TNFSF11, OPGL, TRANCE, OPTB2	Tumor necrosis factor ligand superfamily, member 11 (osteoprotegerin ligand)	TNFSF11	8600	ENSG00000120659		Osteopetrosis, autosomal recessive 2, 259710 (3), Autosomal recessive	Tnfsf11 (MGI:1100089)
chr13	42886387	42992311	13q13.3	13q14.11	607441	EPSTI1	Epithelial stromal interaction 1	EPSTI1	94240	ENSG00000133106			Epsti1 (MGI:1915168)
chr13	43023225	43109169	13q14.1	13q14.11	615339	DNAJC15, MCJ	DNAJ/HSP40 homolog, subfamily C, member 15	DNAJC15	29103	ENSG00000120675			Dnajc15 (MGI:1913398)
chr13	43213132	43786979	13q14.11	13q14.11	610914	ENOX1, CNOX	ECTO-NOX disulfide-thiol exchanger 1	ENOX1	55068	ENSG00000120658			Enox1 (MGI:2444896)
chr13	43821958	43880022	13q14.11	13q14.11	613408	CCDC122	Coiled-coil domain-containing protein 122	CCDC122	160857	ENSG00000151773			Ccdc122 (MGI:1918358)
chr13	43879177	43893931	13q14.11	13q14.11	613409	LACC1, C13orf31	Laccase (multicopper reductase) domain-containing protein 1	LACC1	144811	ENSG00000179630			Lacc1 (MGI:2445077)
chr13	44432142	44576824	13q14	13q14.11	607715	TSC22D1, TSC22	TSC22 domain family, member 1	TSC22D1	8848	ENSG00000102804			Tsc22d1 (MGI:109127)
chr13	44939248	44989482	13q14	13q14.12	604354	NUFIP1, NUFIP	Nuclear fragile X mental retardation protein-interacting protein 1	NUFIP1	26747	ENSG00000083635	pseudogene on 6q12		Nufip1 (MGI:1351474)
chr13	45119829	45284104	13q14.12-q14.13	13q14.12-q14.13	189969	GTF2F2, TF2F2, RAP30	General transcription factor IIF, polypeptide 2, 30kD	GTF2F2	2963	ENSG00000188342			Gtf2f2 (MGI:1915955)
chr13	45333470	45341283	13q12-q14	13q14.13	600763	TPT1, HRF	Tumor protein, translationally-controlled 1	TPT1	7178	ENSG00000133112			Tpt1 (MGI:104890)
chr13	45393315	45434015	13q14.11	13q14.13	610793	SLC25A30, KMCP1	Solute carrier family 25 (mitochondrial carrier, kidney), member 30	SLC25A30	253512	ENSG00000174032			Slc25a30 (MGI:1914804)
chr13	45464894	45536697	13q14.12	13q14.13	606975	COG3, SEC34	Component of oligomeric golgi complex 3	COG3	83548	ENSG00000136152			Cog3 (MGI:2450151)
chr13	45780269	45851710	13q14.12	13q14.13	615609	SIAH3	SIAH E3 ubiquitin protein ligase family, member 3	SIAH3	283514	ENSG00000215475			Siah3 (MGI:2685758)
chr13	45954464	46052793	13q14.13	13q14.13	616453	ZC3H13, KIAA0853	Zinc finger CCCH domain-containing protein 13	ZC3H13	23091	ENSG00000123200			
chr13	46053065	46105075	13q14.11	13q14.13	603101	CPB2, CPU, TAFI	Carboxypeptidase B2, plasma (carboxypeptidase U)	CPB2	1361	ENSG00000080618			Cpb2 (MGI:1891837)
chr13	46125922	46182323	13q14.1-q14.3	13q14.13	153430	LCP1	Lymphocyte cytosolic protein-1 (plasmin)	LCP1	3936	ENSG00000136167			Lcp1 (MGI:104808)
chr13	46553160	46753040	13q14	13q14.1-q14.2	610368	LRCH1, KIAA1016	Leucine-rich repeats and calponin homology domain-containing 1	LRCH1	23143	ENSG00000136141			Lrch1 (MGI:2443390)
chr13	46700000	46700000	13q14.2-q14.1		608049	AUTS3	Autism, susceptibility to, 3		387577			{Autism susceptibility 3}, 608049 (2), Isolated cases, Multifactorial	
chr13	46771255	46797699	13q14.11	13q14.2	133280	ESD	Esterase D; S-formylglutathione hydrolase	ESD	2098	ENSG00000139684	proximal to RB1, WND		Esd,Esd-ps (MGI:3781082,MGI:95421)
chr13	46831541	46897075	13q14-q21	13q14.2	182135	HTR2A	5-hydroxytryptamine (serotonin) receptor-2A	HTR2A	3356	ENSG00000102468		{Alcohol dependence, susceptibility to}, 103780 (3), Multifactorial; {Anorexia nervosa, susceptibility to}, 606788 (3); {Major depressive disorder, response to citalopram therapy in}, 608516 (3); {Obsessive-compulsive disorder, susceptibility to}, 164230 (3), Autosomal dominant; {Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant; {Seasonal affective disorder, susceptibility to}, 608516 (3)	Htr2a (MGI:109521)
chr13	47942655	48001325	13q14.2	13q14.2	603921	SUCLA2, MTDPS5	Succinate-CoA ligase, ADP-forming, beta subunit	SUCLA2	8803	ENSG00000136143		Mitochondrial DNA depletion syndrome 5 (encephalomyopathic with or without methylmalonic aciduria), 612073 (3), Autosomal recessive	Sucla2 (MGI:1306775)
chr13	48037566	48052741	13q14.2	13q14.2	615792	NUDT15, MTH2, NUDT15D	Nucleoside diphosphate-linked moiety X motif 15	NUDT15	55270	ENSG00000136159		{Thiopurines, poor metabolism of, 2}, 616903 (3), Autosomal dominant	Nudt15 (MGI:2443366)
chr13	48075727	48095140	13q14.2	13q14.2	605718	MED4, DRIP36, HSPC126	Mediator of RNA polymerase II transcription, subunit 4, S. cerevisiae, homolog of	MED4	29079	ENSG00000136146			Med4 (MGI:1914631)
chr13	48233137	48262095	13q14	13q14.2	603904	ITM2B, BRI, ABRI, FBD, RDGCA	Integral membrane protein 2B (BRI gene)	ITM2B	9445	ENSG00000136156	mutation identified in 1 RDGCA family	Dementia, familial British, 176500 (3), Autosomal dominant; Dementia, familial Danish, 117300 (3), Autosomal dominant; ?Retinal dystrophy with inner retinal dysfunction and ganglion cell abnormalities, 616079 (3), Autosomal dominant	Itm2b (MGI:1309517)
chr13	48303746	48481889	13q14.1-q14.2	13q14.2	614041	RB1	Retinoblastoma-1	RB1	5925	ENSG00000139687		Bladder cancer, somatic, 109800 (3); Osteosarcoma, somatic, 259500 (3); Retinoblastoma, 180200 (3), Autosomal dominant, Somatic mutation; Retinoblastoma, trilateral, 180200 (3), Autosomal dominant, Somatic mutation; Small cell cancer of the lung, somatic, 182280 (3)	Rb1 (MGI:97874)
chr13	48400896	48444703	13q14.12-q14.2	13q14.2	609239	LPAR6, P2RY5, P2Y5, LAH3, ARWH1, HYPT8	Lysophosphatidic acid receptor 6	LPAR6	10161	ENSG00000139679	in intron 17 of RB gene	Hypotrichosis 8, 278150 (3), Autosomal recessive; Woolly hair, autosomal recessive 1, with or without hypotrichosis, 278150 (3), Autosomal recessive	Lpar6 (MGI:1914418)
chr13	48488962	48535996	13q14.3	13q14.2	603524	RCBTB2, CHC1L	RCC1 domain- and BTB domain-containing protein 2	RCBTB2	1102	ENSG00000136161			Rcbtb2 (MGI:1917200)
chr13	48653710	48711225	13q14	13q14.2	605666	CYSLTR2, CYSLT2	Cysteinyl leukotriene receptor 2	CYSLTR2	57105	ENSG00000152207			Cysltr2 (MGI:1917336)
chr13	48975240	49209778	13q14.2	13q14.2	615794	FNDC3A, KIAA0970, HUGO	Fibronectin type III domain-containing protein 3A	FNDC3A	22862	ENSG00000102531			Fndc3a (MGI:1196463)
chr13	49220337	49222376	13q14-q21	13q14.2	602885	MLNR, GPR38	Motilin receptor	MLNR	2862	ENSG00000102539			
chr13	49308649	49444850	13q14.2	13q14.2	612175	CAB39L	Calcium-binding protein 39-like protein	CAB39L	81617	ENSG00000102547			Cab39l (MGI:1914081)
chr13	49444292	49495002	13q14	13q14.2	607865	SETDB2, CLLD8	SET domain protein, bifurcated, 2	SETDB2	83852	ENSG00000136169			Setdb2 (MGI:2685139)
chr13	49495609	49528991	13q14.1	13q14.2	607796	PHF11, NYREN34	PHD finger protein 11	PHF11	51131	ENSG00000136147			Phf11b,Phf11c,Phf11d,Phf11a (MGI:3645789,MGI:1277133,MGI:1918441,MGI:3648476)
chr13	49531943	49585586	13q14	13q14.2	607867	RCBTB1, CLLD7, GLP, RDEOA	RCC1 domain- and BTB domain-containing protein 1	RCBTB1	55213	ENSG00000136144		Retinal dystrophy with or without extraocular anomalies, 617175 (3), Autosomal recessive	Rcbtb1 (MGI:1918580)
chr13	49628298	49633871	13q14.3	13q14.2	609351	ARL11, ARLTS1	ADP-ribosylation factor-like 11	ARL11	115761	ENSG00000152213			Arl11 (MGI:2444054)
chr13	49660675	49691486	13q14.2	13q14.2	617335	EBPL	Emopamil-binding protein-like	EBPL	84650	ENSG00000123179			Ebpl (MGI:1915427)
chr13	49699306	49792920	13q14.3	13q14.2	601892	KPNA3	Karyopherin (importin) alpha-3	KPNA3	3839	ENSG00000102753			Kpna3 (MGI:1100863)
chr13	49912701	49936500	13q14	13q14.2	607866	CLLD6, C13orf1	Chronic lymphocytic leukemia deletion region gene 6	SPRYD7	57213	ENSG00000123178			Spryd7 (MGI:1913924)
chr13	49982548	50125540	13q14	13q14.2	605766	DLEU2, LEU2, BCMSUN	Deleted in lymphocytic leukemia 2	DLEU2	8847				
chr13	49997006	50018466	13q14.3	13q14.2	605661	TRIM13, RFP2, LEU5	Tripartite motif-containing protein 13	TRIM13	10206	ENSG00000204977			Trim13 (MGI:1913847)
chr13	50015253	50020921	13q14.3	13q14.2	607947	KCNRG, DLTET	Potassium channel regulator	KCNRG	283518	ENSG00000198553			Kcnrg (MGI:2685591)
chr13	50048972	50049060	13q14.3	13q14.2	609704	MIR16-1, MIRN16-1	Micro RNA 16-1	MIR16-1	406950				
chr13	50049118	50049200	13q14.3	13q14.2	609703	MIR15A, MIRN15A	Micro RNA 15A	MIR15A	406948				
chr13	50082168	50528642	13q14	13q14.2-q14.3	605765	DLEU1, LEU1	Deleted in lymphocytic leukemia 1	DLEU1	10301				
chr13	50300000	54700000	13q14.3		612894	STQTL20	Stature quantitative trait locus 20		100302685		associated with rs3118914	{Stature QTL 20}, 612894 (2)	
chr13	50909677	50970461	13q14.1	13q14.3	610326	RNASEH2B, DLEU8, FLJ11712, AGS2	Ribonuclease H2, subunit B	RNASEH2B	79621	ENSG00000136104		Aicardi-Goutieres syndrome 2, 610181 (3), Autosomal recessive	Rnaseh2b (MGI:1914403)
chr13	50994510	51066156	13q14.3	13q14.3	603695	GUCY1B2	Guanylate cyclase 1, soluble, beta-2	GUCY1B2	2974				
chr13	51353170	51453332	13q14.3	13q14.3	604331	INTS6, DDX26, DICE1	Integrator complex subunit 6	INTS6	26512	ENSG00000102786			Ints6 (MGI:1202397)
chr13	51584193	51766798	13q14.3	13q14.3	610418	WDFY2	WD repeat- and FYVE domain-containing protein 2	WDFY2	115825	ENSG00000139668			Wdfy2 (MGI:2442811)
chr13	51767992	51804161	13q14.3	13q14.3	616163	DHRS12, SDR40C1	Short-chain dehydrogenase reductase family, member 12	DHRS12	79758	ENSG00000102796			
chr13	51907819	51910752	13q14-q21	13q14.3	608857	CTAGE3	Cutaneous T-cell lymphoma-associated antigen 3	CTAGE3P	220112				
chr13	51932668	52012129	13q14.3-q21.1	13q14.3	606882	ATP7B, WND	ATPase, Cu++ transporting, beta polypeptide	ATP7B	540	ENSG00000123191		Wilson disease, 277900 (3), Autosomal recessive	Atp7b (MGI:103297)
chr13	52012386	52029647	13q14.3	13q14.3	613666	ALG11, KIAA1266, CDG1P	Alg11, S. cerevisiae, homolog of	ALG11	440138	ENSG00000253710		Congenital disorder of glycosylation, type Ip, 613661 (3), Autosomal recessive	Alg11 (MGI:2142632)
chr13	52064761	52129091	13q14.3	13q14.3	616731	NEK5	Never in mitosis gene A-related kinase 5	NEK5	341676	ENSG00000197168			Nek5 (MGI:2142824)
chr13	52132642	52159860	13q14.2	13q14.3	604044	NEK3	Never in mitosis gene A-related kinase 3	NEK3	4752	ENSG00000136098			Nek3 (MGI:1344371)
chr13	52377166	52406493	13q14.3	13q14.3	616821	THSD1, TMTSP	Thrombospondin type 1 domain-containing protein 1	THSD1	55901	ENSG00000136114			Thsd1 (MGI:1929096)
chr13	52412601	52450677	13q14.3	13q14.3	610903	VPS36, EAP45	Vacuolar protein sorting 36, S. cerevisiae, homolog of	VPS36	51028	ENSG00000136100			Vps36 (MGI:1917410)
chr13	52455359	52476630	13q14	13q14.3	611569	CKAP2, TMAP, LB1	Cytoskeleton-associated protein 2	CKAP2	26586	ENSG00000136108			Ckap2 (MGI:1931797)
chr13	52652690	52700755	13q14.3	13q14.3	604098	SUGT1, SGT1	Suppressor of G2 allele of Skp1, S. Cerevisiae, homolog of	SUGT1	10910	ENSG00000165416			Sugt1 (MGI:1915205)
chr13	52703263	52739811	13q14-q21	13q14.3	605147	LECT1, CHM1	Leukocyte cell derived chemotaxin 1 (chondromodulin)	CNMD	11061	ENSG00000136110			Cnmd (MGI:1341171)
chr13	52843973	52848639	13q14.3	13q14.3	603580	PCDH8	Protocadherin 8	PCDH8	5100	ENSG00000136099			Pcdh8 (MGI:1306800)
chr13	53028740	53052060	13q14.3	13q14.3	614061	OLFM4, GC1, GW112	Olfactomedin 4	OLFM4	10562	ENSG00000102837			Olfm4 (MGI:2685142)
chr13	54700000	72800000	13q21		613289	ATXN8	Ataxin 8	ATXN8	724066		CAG repeat results in polyglutamine expansion protein	Spinocerebellar ataxia 8, 608768 (3), Autosomal dominant	
chr13	54700000	101100000	13q21-q32		602085	PAPA2	Postaxial polydactyly, type A2		8103			Postaxial polydactyly, type A2, 602085 (2), Autosomal dominant	
chr13	54700000	72800000	13q21		607134	SLI3	Specific language impairment QTL, 3		780906		max with D13S1317	Specific language impairment QTL, 3, 607134 (2)	
chr13	57630103	57728930	13q21.1	13q21.1	611760	PCDH17, PCDH68	Protocadherin 17	PCDH17	27253	ENSG00000118946			Pcdh17 (MGI:2684924)
chr13	59665582	60163984	13q21.2	13q21.2	614567	DIAPH3, DIA2, DRF3, AUNA1, NSDAN	Diaphanous, Drosophila, homolog of, 3	DIAPH3	81624	ENSG00000139734		Auditory neuropathy, autosomal dominant, 1, 609129 (3), Autosomal dominant	Diaph3 (MGI:1927222)
chr13	60396456	60573878	13q21.2	13q21.2	614392	TDRD3	Tudor domain-containing protein 3	TDRD3	81550	ENSG00000083544			Tdrd3 (MGI:2444023)
chr13	61409684	61415521	13q21.2	13q21.2	614449	PCDH20, PCDH13	Protocadherin 20	PCDH20	64881	ENSG00000280165			Pcdh20 (MGI:2443376)
chr13	66302833	67230335	13q21.1	13q21.32	603581	PCDH9	Protocadherin 9	PCDH9	5101	ENSG00000184226			Pcdh9 (MGI:1306801)
chr13	69700592	70108492	13q21	13q21.33	605332	KLHL1	Kelch-like 1	KLHL1	57626	ENSG00000150361			Klhl1 (MGI:2136335)
chr13	70107212	70139752	13q21	13q21.33	603680	ATXN8OS, SCA8, KLHL1AS	Ataxin 8 opposite strand	ATXN8OS	6315		due to CTG repeat in untranslated DNA	Spinocerebellar ataxia 8, 608768 (3), Autosomal dominant	
chr13	71437965	71868067	13q22	13q21.33	603803	DACH	Dachshund, Drosophila, homolog of	DACH1	1602	ENSG00000276644			Dach1 (MGI:1277991)
chr13	72708356	72727799	13q21.33-q22.1	13q21.33	613448	C13orf37, MOZART1	Mitotic spindle-organizing protein associated with a ring of gamma-tubulin	MZT1	440145	ENSG00000204899			Mzt1 (MGI:1924039)
chr13	72727738	72756197	13q22.1	13q21.33	610510	BORA, C13orf34	Aurora borealis	BORA	79866	ENSG00000136122			Bora (MGI:1924994)
chr13	72755401	72782127	13q21-q22	13q21.33	607533	DIS3, KIAA1008	Dis3, S. pombe, homolog of	DIS3	22894	ENSG00000083520			Dis3 (MGI:1919912)
chr13	72782022	73016453	13q21-q22	13q21.3-q22.1	607532	PIBF1, JBTS33	Progesterone-induced blocking factor 1	PIBF1	10464	ENSG00000083535		Joubert syndrome 33, 617767 (3), Autosomal recessive	Pibf1 (MGI:1261910)
chr13	72800000	78500000	13q22		142700	DDH1	Developmental dysplasia of the hip 1		780896			Developmental dysplasia of the hip 1, 142700 (2), Multifactorial	
chr13	72800000	101100000	13q22-q32		167870	PAND1	Panic disorder syndrome 1		387572			Panic disorder syndrome 1, 167870 (2), ?Autosomal dominant	
chr13	73686011	74168294	13q22	13q22.1	607531	KLF12, AP2REP	Kruppel-like factor 12	KLF12	11278	ENSG00000118922			Klf12 (MGI:1333796)
chr13	75284663	75483143	13q22.2	13q22.2	612465	TBC1D4, AS160, KIAA0603, NIDDM5	TPC1 domain family, member 4	TBC1D4	9882	ENSG00000136111		{Diabetes mellitus, noninsulin-dependent, 5}, 616087 (3)	Tbc1d4 (MGI:2429660)
chr13	75525213	75549438	13q22	13q22.2	612377	COMMD6	COMM domain-containing protein 6	COMMD6	170622	ENSG00000188243			
chr13	75549479	75606019	13q22	13q22.2	603090	UCHL3	Ubiquitin carboxyl-terminal esterase L3	UCHL3	7347	ENSG00000118939			Uchl3 (MGI:1355274)
chr13	75620433	75859869	13q21-q22	13q22.2	604362	LMO7, FBXO20, FBX20, KIAA0858	LIM domain only 7	LMO7	4008	ENSG00000136153			Lmo7 (MGI:1353586)
chr13	76880168	76886404	13q21	13q22.3	610521	KCTD12, PFET1, KIAA1778, C13orf2	Potassium channel tetramerization domain-containing protein 12	KCTD12	115207	ENSG00000178695			Kctd12 (MGI:2145823)
chr13	76928450	76929089	13q22	13q22.3	602543	TNFRSF11B, OPG, OCIF	Tumor necrosis factor receptor superfamily, member 11B	BTF3P11	690				
chr13	76948558	76958641	13q22.3	13q22.3	615275	ACOD1, IRG1	Aconitate decarboxylase 1	ACOD1	730249	ENSG00000102794			Acod1 (MGI:103206)
chr13	76991923	77002516	13q22.3	13q22.3	608102	CLN5	CLN5 gene	CLN5	1203	ENSG00000102805		Ceroid lipofuscinosis, neuronal, 5, 256731 (3), Autosomal recessive	Cln5 (MGI:2442253)
chr13	76992596	77027195	13q22	13q22.3	605653	FBXL3A, FBL3A, FBL3	F-box and leucine-rich repeat protein 3A	FBXL3	26224	ENSG00000005812			Fbxl3 (MGI:1354702)
chr13	77044656	77327097	13q22	13q22.3	610392	MYCBP2, PAM, KIAA0916	Myc-binding protein 2	MYCBP2	23077	ENSG00000005810			Mycbp2 (MGI:2179432)
chr13	77535673	77645262	13q22	13q22.3	604112	SCEL	Sciellin	SCEL	8796	ENSG00000136155			Scel (MGI:1891228)
chr13	77697673	77764241	13q22.3	13q22.3	610491	SLAIN1	SLAIN motif family, member 1	SLAIN1	122060	ENSG00000139737			Slain1 (MGI:2145578)
chr13	77895480	77975722	13q22	13q22.3	131244	EDNRB, HSCR2, ABCDS, WS4A	Endothelin receptor type B	EDNRB	1910	ENSG00000136160	?piebald lethal in mouse	ABCD syndrome, 600501 (3), Autosomal recessive; {Hirschsprung disease, susceptibility to, 2}, 600155 (3), Autosomal dominant; Waardenburg syndrome, type 4A, 277580 (3), Autosomal recessive, Autosomal dominant	Ednrb (MGI:102720)
chr13	78500000	109600000	13q31-q33		193003	NYS4	Nystagmus 4, congenital, autosomal dominant	NYS4	317685			Nystagmus 4, congenital, autosomal dominant, 193003 (2), Autosomal dominant	
chr13	78599091	78603559	13q21.1-q22	13q31.1	601632	POU4F1, BRN3A	POU domain, class 4, transcription factor 1	POU4F1	5457	ENSG00000152192			Pou4f1 (MGI:102525)
chr13	78614285	78659178	13q31.1	13q31.1	615906	RNF219, C13orf7	Ring finger protein 219	RNF219	79596	ENSG00000152193			Rnf219 (MGI:1919736)
chr13	79480721	79556076	13q22.2	13q31.1	610041	NDFIP2, N4WBP5A, KIAA1165	NEDD4 family-interacting protein 2	NDFIP2	54602	ENSG00000102471			Ndfip2 (MGI:1923523)
chr13	80011076	80026662	13q31.1	13q31.1	615230	LNCR13Q1	Long noncoding RNA on 13q (TCONS_00021856)	LINC01080	101515984				
chr13	80335975	80341114	13q31.1	13q31.1	602466	SPRY2, IGAN3	Sprouty, Drosophila, homolog of, 2	SPRY2	10253	ENSG00000136158	mutation identified in 1 IGAN3 family	{?IgA nephropathy, susceptibility to, 3}, 616818 (3), Autosomal dominant	Spry2 (MGI:1345138)
chr13	83877204	83882392	13q31	13q31.1	609678	SLITRK1, KIAA1910, TTM	SLIT- and NTRK-like family, member 1	SLITRK1	114798	ENSG00000178235	mutation identified in 1 TTM patient	Tourette syndrome, 137580 (3), Autosomal dominant; ?Trichotillomania, 613229 (3), Autosomal dominant, Multifactorial	Slitrk1 (MGI:2679446)
chr13	85792786	85799347	13q31	13q31.1	609681	SLITRK6, DFNMYP	SLIT- and NTRK-like family, member 6	SLITRK6	84189	ENSG00000184564		Deafness and myopia, 221200 (3), Autosomal recessive	Slitrk6 (MGI:2443198)
chr13	87671231	87679618	13q31	13q31.2	609680	SLITRK5, KIAA0918	SLIT- and NTRK-like family, member 5	SLITRK5	26050	ENSG00000165300			Slitrk5 (MGI:2679448)
chr13	89400000	97500000	13q31.3-q32.1		610840	MMVP3	Mitral valve prolapse, myxomatous 3		100034705		max lod at D13S132	Mitral valve prolapse, myxomatous 3, 610840 (2), Autosomal dominant	
chr13	89400000	94400000	13q31.3		609572	PPR2	Photoparoxysmal response 2		780910		max lod at D13S1230	Photoparoxysmal response 2, 609572 (2)	
chr13	91347819	91354574	13q31.3	13q31.3	609415	MIR17HG, MIRH1, MIHG1, MIRHG1, C13orf25, FGLDS2	Micro RNA 17 host gene	MIR17HG	407975			Feingold syndrome 2, 614326 (3), Autosomal dominant	
chr13	91350604	91350687	13q31.3	13q31.3	609416	MIR17, MIR91, MIRN17	Micro RNA 17	MIR17	406952		within C13orf25; sequence encodes 2 micro RNAs		
chr13	91350750	91350820	13q31.3	13q31.3	609417	MIR18A, MIRN18A	Micro RNA 18A	MIR18A	406953		within C13orf25		
chr13	91350890	91350971	13q31.3	13q31.3	609418	MIR19A, MIRN19A	Micro RNA 19A	MIR19A	406979		within C13orf25		
chr13	91351064	91351134	13q31.3	13q31.3	609420	MIR20A, MIRN20A	Micro RNA 20A	MIR20A	406982		within C13orf25		
chr13	91351191	91351277	13q31.3	13q31.3	609419	MIR19B1, MIRN19B1	Micro RNA 19B1	MIR19B1	406980		within C13orf25		
chr13	91351313	91351390	13q31.3	13q31.3	609422	MIR92A1, MIR92-1, MIRN92-1	Micro RNA 92A1	MIR92A1	407048		within C13orf25		
chr13	91398618	92867236	13q32	13q31.3	602446	GPC5	Glypican 5	GPC5	2262	ENSG00000179399			Gpc5 (MGI:1194894)
chr13	93226807	94408019	13q32	13q31.3-q32.1	604404	GPC6, OMIMD1	Glypican 6	GPC6	10082	ENSG00000183098		Omodysplasia 1, 258315 (3), Autosomal recessive	Gpc6 (MGI:1346322)
chr13	94400000	101100000	13q32		614629	KTCN7	Keratoconus 7		100887822		max lod at D13S159	Keratoconus 7, 614629 (2), Autosomal dominant	
chr13	94400000	101100000	13q32		156600	MCOR, C13DELq32, DEL13q32	Microcoria, congenital (chromosome 13q32 deletion syndrome)				35-80kb deletion encompassing TGDS and GPR180	Microcoria, congenital, 156600 (4), Autosomal dominant	
chr13	94400000	101100000	13q32		603176	SCZD7	Schizophrenia susceptibility locus, chromosome 13q-related	SCZD7	8401			{Schizophrenia}, 181500 (2), Autosomal dominant	
chr13	94400000	101100000	13q32		609903	SLEB5	Systemic lupus erythematosus, susceptibility to, 5		100188798		max lod at D13S892	{Systemic lupus erythematosus, susceptibility to, 5}, 609903 (2)	
chr13	94400000	109600000	13q32-q33		606258	STQTL4	Stature quantitative trait locus 4		282550		max lod at D13S779 and D13S797	{Stature QTL 4}, 606258 (2)	
chr13	94437303	94549412	13q31-q32	13q32.1	191275	DCT, TYRP2	Dopachrome tautomerase (dopachrome delta-isomerase; tyrosinase-related protein 2)	DCT	1638	ENSG00000080166			Dct (MGI:102563)
chr13	94574053	94596274	13q32.1	13q32.1	616146	TGDS, SDR2E1, CATMANS	TDP-glucose 4,6-dehydratase	TGDS	23483	ENSG00000088451		Catel-Manzke syndrome, 616145 (3), Autosomal recessive	Tgds (MGI:1923605)
chr13	94601849	94634644	13q31	13q32.1	607787	GPR180, ITR	G protein-coupled receptor 180	GPR180	160897	ENSG00000152749			Gpr180 (MGI:1930949)
chr13	94709621	94712542	13q31-q32	13q32.1	604974	SOX21	SRY-box 21	SOX21	11166	ENSG00000125285			Sox21 (MGI:2654070)
chr13	95019828	95301445	13q32	13q32.1	605250	ABCC4, MRP4, MOATB	ATP-binding cassette, subfamily C, member 4	ABCC4	10257	ENSG00000125257			Abcc4 (MGI:2443111)
chr13	95433587	95579755	13q32.1	13q32.1	617579	CLDN10, OSPL, CPETRL3, HELIX	Claudin 10	CLDN10	9071	ENSG00000134873		HELIX syndrome, 617671 (3), Autosomal recessive	Cldn10 (MGI:1913101)
chr13	95578201	95644705	13q31	13q32.1	608671	DZIP1, KIAA0996	DAZ-interacting zinc finger protein 1	DZIP1	22873	ENSG00000134874			Dzip1 (MGI:1914311)
chr13	95677138	95794988	13q32	13q32.1	601184	DNAJC3, PRKRI, P58, ACPHD	DnaJ, E. coli, homolog of, subfamily C, member 3 (protein kinase inhibitor p58)	DNAJC3	5611	ENSG00000102580	mutation identified in 1 ACPHD family	?Ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus, 616192 (3), Autosomal recessive	Dnajc3 (MGI:107373)
chr13	95801579	96053481	13q32.1	13q32.1	605898	UGGT2, HUGT2	UDP-glucose glycoprotein glucosyltransferase 2	UGGT2	55757	ENSG00000102595			Uggt2 (MGI:1913685)
chr13	96090633	96839561	13q32-q33	13q32.1	609401	HS6ST3	Heparan sulfate 6-O-sulfotransferase 3	HS6ST3	266722	ENSG00000185352			Hs6st3 (MGI:1354960)
chr13	96985718	96994729	13q32.1	13q32.1	606922	GPR80	G protein-coupled receptor 80	OXGR1	27199	ENSG00000165621			Oxgr1 (MGI:2685145)
chr13	97434220	97467997	13q34	13q32.1	179540	RAP2A	RAP2, member of RAS oncogene family (K-rev)	RAP2A	5911	ENSG00000125249			Rap2a (MGI:97855)
chr13	97953640	98024295	13q32.2	13q32.2	602008	IPO5, RANBP5, KPNB3	Importin 5	IPO5	3843	ENSG00000065150			Ipo5 (MGI:1917822)
chr13	98142561	98449772	13q32.2	13q32.2	602654	FARP1, CDEP	FERM, ARHGEF, and pleckstrin domain-containing protein 1	FARP1	10160	ENSG00000152767			Farp1 (MGI:2446173)
chr13	98450198	98577150	13q31.2-q32.3	13q32.2	604984	STK24, MST3, MST3B	Serine/threonine protein kinase 24	STK24	8428	ENSG00000102572			Stk24 (MGI:2385007)
chr13	98683800	98752674	13q33-q34	13q32.2-q32.3	600544	SLC15A1, HPECT1	Solute carrier family 15 (oligopeptide transporter), member 1	SLC15A1	6564	ENSG00000088386			Slc15a1 (MGI:1861376)
chr13	98793486	99086405	13q32.3	13q32.3	607325	ZIZ1, KIAA1058	Zizimin 1	DOCK9	23348	ENSG00000088387			Dock9 (MGI:106321)
chr13	99254712	99262497	13q32	13q32.3	602042	GPR18	G protein-coupled receptor-18	GPR18	2841	ENSG00000125245			Gpr18 (MGI:107859)
chr13	99294272	99307494	13q32.3	13q32.3	605741	GPR183, EBI2	G protein-coupled receptor 183	GPR183	1880	ENSG00000169508			Gpr183 (MGI:2442034)
chr13	99501373	99564047	13q32.3	13q32.3	604678	TM9SF2	Transmembrane 9 superfamily, member 2	TM9SF2	9375	ENSG00000125304			Tm9sf2 (MGI:1915309)
chr13	99606663	99909458	13q32	13q32.3	609686	CLYBL, CLB	Citrate lyase beta-like	CLYBL	171425	ENSG00000125246			Clybl (MGI:1916884)
chr13	99962963	99971908	13q32.3	13q32.3	617896	ZIC5, OPR	Zic family, member 5	ZIC5	85416	ENSG00000139800			Zic5 (MGI:1929518)
chr13	99981755	99986772	13q32	13q32.3	603073	ZIC2, HPE5	ZIC family, member 2	ZIC2	7546	ENSG00000043355		Holoprosencephaly 5, 609637 (3), Autosomal dominant	Zic2 (MGI:106679)
chr13	100089014	100530436	13q32	13q32.3	232000	PCCA	Propionyl Coenzyme A carboxylase, alpha polypeptide	PCCA	5095	ENSG00000175198		Propionicacidemia, 606054 (3), Autosomal recessive	Pcca (MGI:97499)
chr13	100530163	100588791	13q32.3	13q32.3	613378	A2LD1, GGACT	AIG1-like domain-containing protein 1	GGACT	87769	ENSG00000134864			Ggact (MGI:2385008)
chr13	101053773	101417205	13q33.11	13q32.3-q33.1	611549	NALCN, IHPRF1, CLIFAHDD	Sodium leak channel, nonselective	NALCN	259232	ENSG00000102452		Congenital contractures of the limbs and face, hypotonia, and developmental delay, 616266 (3), Autosomal dominant; Hypotonia, infantile, with psychomotor retardation and characteristic facies 1, 615419 (3), Autosomal recessive	Nalcn (MGI:2444306)
chr13	101100000	114364328	13q33.1-q34		610361	OFC9	Orofacial cleft 9		100462724		associated with rs1830756	Orofacial cleft 9, 610361 (2)	
chr13	101452592	101720856	13q33	13q33.1	604234	ITGBL1, TIED	Integrin, beta-like 1	ITGBL1	9358	ENSG00000198542			Itgbl1 (MGI:2443439)
chr13	101720854	102402427	13q34	13q33.1	601515	FGF14, FHF4, SCA27	Fibroblast growth factor-14	FGF14	2259	ENSG00000102466		Spinocerebellar ataxia 27, 609307 (3), Autosomal dominant	Fgf14 (MGI:109189)
chr13	102596935	102679957	13q32-q33	13q33.1	190470	TPP2	Tripeptidyl peptidase II	TPP2	7174	ENSG00000134900			Tpp2 (MGI:102724)
chr13	102678781	102704310	13q33.1	13q33.1	615259	METTL21C, C13orf39	Methyltransferase-like 21C	METTL21C	196541	ENSG00000139780			Mettl21c (MGI:3611450)
chr13	102784280	102799053	13q33	13q33.1	611613	KDELC1, EP58	KDEL motif-containing 1	KDELC1	79070	ENSG00000134901			Kdelc1 (MGI:1919300)
chr13	102845840	102876000	13q33	13q33.1	133530	ERCC5, XPG, COFS3	Excision-repair, complementing defective, in Chinese hamster, number 5	ERCC5	2073	ENSG00000134899		Cerebrooculofacioskeletal syndrome 3, 616570 (3), Autosomal recessive; Xeroderma pigmentosum, group G, 278780 (3), Autosomal recessive; Xeroderma pigmentosum, group G/Cockayne syndrome, 278780 (3), Autosomal recessive	Ercc5 (MGI:103582)
chr13	103043997	103066845	13q33	13q33.1	601295	SLC10A2, NTCP2, PBAM	Solute carrier family 10 (sodium/bile acid cotransporter family), member 2	SLC10A2	6555	ENSG00000125255		Bile acid malabsorption, primary, 613291 (3), Autosomal recessive	Slc10a2 (MGI:1201406)
chr13	104200000	106400000	13q33.2		614318	VUR5	Vesicoureteral reflux 5		100820760		nearest marker rs4476030	Vesicoureteral reflux 5, 614318 (2)	
chr13	105459054	105505680	13q34	13q33.2	607415	DAOAAS, G30	DAOA antisense RAN	DAOA-AS1	282706				
chr13	105465866	105491033	13q34	13q33.2	607408	DAOA, G72	D-amino acid oxidase activator	DAOA	267012	ENSG00000182346		{Schizophrenia}, 181500 (2), Autosomal dominant	
chr13	106489730	106535039	13q33	13q33.3	600527	EFNB2, EPLG5, LERK5, HTKL	eph-related receptor tyrosine kinase ligand 5 (ephrin-B2)	EFNB2	1948	ENSG00000125266			Efnb2 (MGI:105097)
chr13	106543313	106568165	13q33.3	13q33.3	614046	ARGLU1	Arginine- and glutamate-rich protein 1	ARGLU1	55082	ENSG00000134884			Arglu1 (MGI:2442985)
chr13	108207441	108218367	13q22-q34	13q33.3	601837	LIG4, LIG4S	Ligase IV, DNA, ATP-dependent	LIG4	3981	ENSG00000174405		LIG4 syndrome, 606593 (3), Autosomal recessive; {Multiple myeloma, resistance to}, 254500 (3), Somatic mutation	Lig4 (MGI:1335098)
chr13	108268239	108308483	13q32-q34	13q33.3	603969	TNFSF13B, BLYS, BAFF	Tumor necrosis factor ligand superfamily, member 13B	TNFSF13B	10673	ENSG00000102524			Tnfsf13b (MGI:1344376)
chr13	108495728	109208006	13q33.3	13q33.3	615479	MYO16, MYAP3, KIAA0865	Myosin XVI	MYO16	23026	ENSG00000041515			Myo16 (MGI:2685951)
chr13	109600000	114364328	13q34		614211	DFNA33	Deafness, autosomal dominant 33	DFNA33	29779		maximum lod at D13S285	Deafness, autosomal dominant 33, 614211 (2), Autosomal dominant	
chr13	109753836	109786566	13q34	13q34	600797	IRS2	Insulin receptor substrate 2	IRS2	8660	ENSG00000185950		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant	Irs2 (MGI:109334)
chr13	110148957	110307156	13q34	13q34	120130	COL4A1, POREN1, HANAC, ICH, BSVD, RATOR	Collagen IV, alpha-1 polypeptide	COL4A1	1282	ENSG00000187498	mutation identified in 1 RATOR family	Angiopathy, hereditary, with nephropathy, aneurysms, and muscle cramps, 611773 (3), Autosomal dominant; Brain small vessel disease with or without ocular anomalies, 607595 (3), Autosomal dominant; {Hemorrhage, intracerebral, susceptibility to}, 614519 (3); Porencephaly 1, 175780 (3), Autosomal dominant; ?Retinal arteries, tortuosity of, 180000 (3), Autosomal dominant; Schizencephaly, 269160 (3)	Col4a1 (MGI:88454)
chr13	110307266	110513208	13q34	13q34	120090	COL4A2, POREN2, ICH	Collagen IV, alpha-2 polypeptide	COL4A2	1284	ENSG00000134871		{Hemorrhage, intracerebral, susceptibility to}, 614519 (3); Porencephaly 2, 614483 (3), Autosomal dominant	Col4a2 (MGI:88455)
chr13	110615459	110639995	13q34	13q34	615910	CARKD	Carbohydrate kinase domain-containing protein	NAXD	55739	ENSG00000213995			Naxd (MGI:1913353)
chr13	110641409	110713600	13q34	13q34	612800	CARS2, COXPD27	Cysteinyl-tRNA synthetase 2	CARS2	79587	ENSG00000134905		Combined oxidative phosphorylation deficiency 27, 616672 (3), Autosomal recessive	Cars2 (MGI:1919191)
chr13	110712622	110721073	13q34	13q34	601566	ING1	Inhibitor of growth 1	ING1	3621	ENSG00000153487		Squamous cell carcinoma, head and neck, somatic, 275355 (3)	Ing1 (MGI:1349481)
chr13	111114618	111305733	13q34	13q34	605477	ARHGEF7, PIXB, COOL1	Rho guanine nucleotide exchange factor 7 (PAK-interacting exchange factor, beta)	ARHGEF7	8874	ENSG00000102606			Arhgef7 (MGI:1860493)
chr13	112067598	112071705	13q34	13q34	602148	SOX1	SRY (sex determining region Y)-box 1	SOX1	6656	ENSG00000182968			Sox1 (MGI:98357)
chr13	112485004	112606468	13q34	13q34	617818	TUBGCP3, GCP3, GRIP104, SPC98, ALP6	Tubulin-gamma complex-associated protein 3	TUBGCP3	10426	ENSG00000126216			Tubgcp3 (MGI:2183752)
chr13	112690033	112887167	13q34	13q34	605868	ATP11A, ATPIS, ATPIH	ATPase, class VI, type 11A	ATP11A	23250	ENSG00000068650			Atp11a (MGI:1354735)
chr13	112894377	113099738	13q34	13q34	609499	MCF2L, OST, KIAA0362	MCF2-like protein	MCF2L	23263	ENSG00000126217			Mcf2l (MGI:103263)
chr13	113105772	113120680	13q34	13q34	613878	F7	Coagulation factor VII	F7	2155	ENSG00000057593		Factor VII deficiency, 227500 (3), Autosomal recessive; {Myocardial infarction, decreased susceptibility to}, 608446 (3)	F7 (MGI:109325)
chr13	113122798	113149528	13q34	13q34	613872	F10	Coagulation factor X	F10	2159	ENSG00000126218		Factor X deficiency, 227600 (3), Autosomal recessive	F10 (MGI:103107)
chr13	113155863	113172385	13q34	13q34	176895	PROZ, PZ	Protein Z	PROZ	8858	ENSG00000126231		[Protein Z deficiency], 614024 (3)	Proz (MGI:1860488)
chr13	113165001	113209466	13q34	13q34	613713	PCID2	PCI domain-containing protein 2	PCID2	55795	ENSG00000126226			Pcid2 (MGI:2443003)
chr13	113208192	113267107	13q34	13q34	603137	CUL4A	Cullin 4A	CUL4A	8451	ENSG00000139842			Cul4a (MGI:1914487)
chr13	113297153	113323425	13q34	13q34	153330	LAMP1	Lysosome-associated membrane protein-1	LAMP1	3916	ENSG00000185896			Lamp1 (MGI:96745)
chr13	113421939	113453523	13q31	13q34	610620	ADPRHL1, ARH2	ADP-ribosylhydrolase-like 1	ADPRHL1	113622	ENSG00000153531			Adprhl1 (MGI:2442168)
chr13	113490737	113550228	13q34	13q34	617134	TMCO3, C13orf11	Transmembrane and coiled-coil domains protein 3	TMCO3	55002	ENSG00000150403			Tmco3 (MGI:2444946)
chr13	113584687	113641472	13q34	13q34	189902	TFDP1, DP1, DRTF1	Transcription factor Dp-1	TFDP1	7027	ENSG00000198176	pseudogene on 1q32.3		Tfdp1 (MGI:101934)
chr13	113645770	113735663	13q34	13q34	180381	GRK1, RHOK, RK	G protein-dependent receptor kinase 1 (rhodopsin kinase)	GRK1	6011	ENSG00000185974		Oguchi disease-2, 613411 (3)	Grk1 (MGI:1345146)
chr13	113648803	113658197	13q34	13q34	137217	ATP4B	ATPase, H+, K+ transporting, beta	ATP4B	496	ENSG00000186009			Atp4b (MGI:88114)
chr13	113820548	113864102	13q34	13q34	600441	GAS6, AXLLG, AXSF	Growth arrest-specific 6	GAS6	2621	ENSG00000183087			Gas6 (MGI:95660)
chr13	113977782	114132622	13q34	13q34	605182	RASA3	Ras p21 protein activator 3	RASA3	22821	ENSG00000185989			Rasa3 (MGI:1197013)
chr13	114234844	114272722	13q34	13q34	603461	CDC16, APC6	Cell division cycle 16, S. cerevisiae, homolog of	CDC16	8881	ENSG00000130177			Cdc16 (MGI:1917207)
chr13	114281583	114305816	13q34	13q34	605530	UPF3A, RENT3A	UPF3 regulator of nonsense transcripts, yeast, homolog of, A	UPF3A	65110	ENSG00000169062			Upf3a (MGI:1914281)
chr13	114314334	114327327	13q34	13q34	616327	CHAMP1, ZNF828, C13orf8, KIAA1802, MRD40	Chromosome alignment-maintaining phosphoprotein 1	CHAMP1	283489	ENSG00000198824		Mental retardation, autosomal dominant 40, 616579 (3), Autosomal dominant	Champ1 (MGI:1196398)
chr14	3600000	8000000	14p12		180451	RNR2	Ribosomal RNA-2	RNR2	6053				
chr14	8000000	37400000	14p11.2-q13		606771	ADIPQTL3, CAQ14	Adiponectin, serum level of, quantitative trait locus 3		171512		between D14S608 and D14S599	{Adiponectin, serum level of, QTL3}, 606771 (2)	
chr14	17200000	57600000	14q11-q22		613457	DEL14q11q22, C14DELq11q22	Chromosome 14q11-q22 deletion syndrome				contiguous gene syndrome	Chromosome 14q11-q22 deletion syndrome, 613457 (4), Isolated cases	
chr14	17200000	32900000	14q11-q12		606675	IBD4	Inflammatory bowel disease 4	IBD4	50608			{Inflammatory bowel disease 4}, 606675 (2)	
chr14	17200000	24100000	14q11		617833	ZFHX2AS1	ZFHX2 antisense RNA 1	ZFHX2-AS1	109729160				
chr14	18200000	32900000	14q11.2-q12		609965	DFNA53	Deafness, autosomal dominant 53	DFNA53	353347		max lod at D14S1280	Deafness, autosomal dominant 53, 609965 (2), Autosomal dominant	
chr14	18200000	37400000	14q11.2-q13		144110	HHPP	Hyperhidrosis palmaris et plantaris		100861529		between D14S283 and D14S264	Hyperhidrosis palmaris et plantaris, 144110 (2), Autosomal dominant	
chr14	18200000	32900000	14q11.2-q12		611095	MRT9, MRT26	Mental retardation, autosomal recessive, 9/26	MRT9	100101424		between rs1998463 and rs243286	Mental retardation, autosomal recessive, 9/26, 611095 (2), Autosomal recessive	
chr14	18200000	24100000	14q11.2		612851	NRCLP5	Narcolepsy 5		100302514		associated with rs1154155, rs12587781, rs1263646	{Narcolepsy 5}, 612851 (2)	
chr14	18200000	32900000	14q11.2-q12		610420	PAURT1	Preauricular tag, isolated, autosomal dominant, 1		101669760		between D14S990 and D14S264	Preauricular tag, isolated, autosomal dominant, 1, 610420 (2), Autosomal dominant	
chr14	18200000	24100000	14q11.2		605463	RSCIS	Radiation sensitivity/chromosome instability syndrome, autosomal dominant		64239			Radiation sensitivity/chromosome instability syndrome, autosomal dominant (1)	
chr14	18200000	32900000	14q11.2-q12		610234	SPD3	Synpolydactyly 3		780922		max lod at D14S264	Synpolydactyly 3, 610234 (2)	
chr14	18200000	24100000	14q11.2		615443	TRAJ@	T-cell receptor alpha chain joining gene cluster						
chr14	18200000	24100000	14q11.2		615442	TRAV@	T-cell receptor alpha chain variable gene cluster						
chr14	18200000	24100000	14q11.2		615460	TRDD@	T-cell receptor delta chain diversity gene cluster						
chr14	18200000	24100000	14q11.2		615461	TRDJ@	T-cell receptor delta chain joining gene cluster						
chr14	18200000	24100000	14q11.2		615459	TRDV@	T-cell receptor delta chain variable gene cluster						
chr14	20311367	20333311	14q11.1	14q11.2	608249	C14orf18, HEI10	Human enhancer of invasion 10	CCNB1IP1	57820	ENSG00000100814			Ccnb1ip1 (MGI:2685134)
chr14	20343040	20357903	14q11.2	14q11.2	607725	PARP2, ADPRTL2, ADPRT2	Poly(ADP-ribose) polymerase 2	PARP2	10038	ENSG00000129484			Parp2 (MGI:1341112)
chr14	20343070	20343410	14q11.2	14q11.2	608513	RPPH1, H1RNA	Ribonuclease P, RNA component H1	RPPH1	85495				
chr14	20365666	20413539	14q11.2	14q11.2	601686	TEP1, TP1	Telomerase-associated protein-1	TEP1	7011	ENSG00000129566			Tep1 (MGI:109573)
chr14	20447047	20455107	14q11.2-q12	14q11.2	610107	OSGEP, FLJ20411, GAMOS3	O-sialoglycoprotein endopeptidase	OSGEP	55644	ENSG00000092094		Galloway-Mowat syndrome 3, 617729 (3), Autosomal recessive	Osgep (MGI:1913496)
chr14	20455130	20457771	14q12	14q11.2	107748	APEX, APE	APEX nuclease (multifunctional DNA repair enzyme)	APEX1	328	ENSG00000100823			Apex1 (MGI:88042)
chr14	20469378	20478005	14q13.1	14q11.2	164050	PNP, NP	Purine nucleoside phosphorylase	PNP	4860	ENSG00000198805	centromeric to TCRA	Immunodeficiency due to purine nucleoside phosphorylase deficiency, 613179 (3), Autosomal recessive	Pnp,Pnp2 (MGI:3712328,MGI:97365)
chr14	20556092	20560930	14q11.2	14q11.2	614014	RNAE9	Ribonuclease A family, 9	RNASE9	390443	ENSG00000188655			Rnase9 (MGI:3057273)
chr14	20609335	20609406	14q11	14q11.2	189930	TRNAP1, TRP1	tRNA proline-1	TRP-AGG2-5	7217				
chr14	20610131	20610212	14q11-q12	14q11.2	189932	TRL-AAG2-1, TRNAL1, TRL1	tRNA leucine (AAG) 2-1	TRL-AAG2-3	7207				
chr14	20613400	20613471	14q11-q12	14q11.2	189931	TRNAP2, TRP2	tRNA proline-2	TRP-AGG2-6	7218				
chr14	20613789	20613861	14q11-q12	14q11.2	189933	TRNAT2, TRT2	tRNA threonine-2	TRT-TGT3-1	7237				
chr14	20684176	20694185	14q11.2	14q11.2	105850	ANG, RNASE5, ALS9	Angiogenin	ANG	283	ENSG00000214274	proximal to TCRA/TCRD	Amyotrophic lateral sclerosis 9, 611895 (3)	Ang (MGI:88022)
chr14	20684212	20700601	14q11.2	14q11.2	601030	RNASE4, RNS4	Ribonuclease, RNase A family, 4	RNASE4	6038	ENSG00000258818			Rnase4 (MGI:1926217)
chr14	20722390	20748379	14q11.2	14q11.2	611580	EDDM3A, FAM12A, HE3A	Epididymal protein 3A	EDDM3A	10876	ENSG00000181562			
chr14	20768426	20770947	14q11.2	14q11.2	611582	FAM12B, HE3B	Family with sequence similarity 12, member B	EDDM3B	64184	ENSG00000181552			Eddm3b (MGI:2684921)
chr14	20780955	20782466	14q11.2	14q11.2	601981	RNASE6	Ribonuclease, RNase A family, k6	RNASE6	6039	ENSG00000169413			Rnase6 (MGI:1925666)
chr14	20801355	20802876	14q11.2	14q11.2	180440	RNASE1, RNS1	Ribonuclease, RNase A family, 1 (pancreatic)	RNASE1	6035	ENSG00000129538			Rnase1 (MGI:97919)
chr14	20891402	20892347	14q11.2	14q11.2	131398	RNASE3, RNS3, ECP	Ribonuclease, RNase A family, 3 (eosinophil cationic protein)	RNASE3	6037	ENSG00000169397			
chr14	20955470	20956434	14q11.2	14q11.2	131410	RNASE2, RNS2, EDN	Ribonuclease, RNase A family, 2, liver (eosinophil-derived neurotoxin)	RNASE2	6036	ENSG00000169385			Rnase2a,Rnase2b (MGI:1890465,MGI:1858598)
chr14	20989805	20997034	14q11.2	14q11.2	616091	METTL17, METT11D1	Methyltransferase-like 17	METTL17	64745	ENSG00000165792			Mettl17 (MGI:1098577)
chr14	20999254	21001874	14q11.2	14q11.2	612166	SLC39A2, ZIP2	Solute carrier family 39 (zinc transporter), member 2	SLC39A2	29986	ENSG00000165794			Slc39a2 (MGI:2684326)
chr14	21016762	21070871	14q11.2	14q11.2	605272	NDRG2	N-myc downstream-regulated gene 2	NDRG2	57447	ENSG00000165795			Ndrg2 (MGI:1352498)
chr14	21024261	21036351	14q11.2	14q11.2	616956	TPPP2, p18	Tubulin polymerization-promoting protein family, member 2	TPPP2	122664	ENSG00000179636			Tppp2 (MGI:2684923)
chr14	21042225	21044232	14q11.2	14q11.2	612484	RNASE7	Ribonuclease A family 7	RNASE7	84659	ENSG00000165799			
chr14	21057821	21058454	14q11.2	14q11.2	612485	RNASE8	Ribonuclease A family, 8	RNASE8	122665	ENSG00000173431			
chr14	21061275	21090247	14q11.2	14q11.2	610018	SOLO, FLJ10357	SOLO gene	ARHGEF40	55701	ENSG00000165801			Arhgef40 (MGI:2685515)
chr14	21090045	21104720	14q11	14q11.2	605036	ZNF219	Zinc finger protein-219	ZNF219	51222	ENSG00000165804			Zfp219 (MGI:1917140)
chr14	21209135	21269478	14q11.2	14q11.2	164020	HNRNPC, HNRPC	Heterogeneous nuclear ribonucleoprotein C	HNRNPC	3183	ENSG00000092199			Hnrnpc (MGI:107795)
chr14	21287976	21351315	14q11	14q11.2	605446	RPGRIP1, LCA6, CORD13	Retinitis pigmentosa GTPase regulator-interacting protein	RPGRIP1	57096	ENSG00000092200		Cone-rod dystrophy 13, 608194 (3); Leber congenital amaurosis 6, 613826 (3)	Rpgrip1 (MGI:1932134)
chr14	21351471	21384265	14q11.2	14q11.2	605012	SUPT16H, SPT16	Suppressor of ty 16, S. cerevisiae, homolog of	SUPT16H	11198	ENSG00000092201			Supt16 (MGI:1890948)
chr14	21385193	21437297	14q11.2	14q11.2	610528	CHD8, DUPLIN, KIAA1564, AUTS18	Chromodomain helicase DNA-binding protein 8	CHD8	57680	ENSG00000100888		{Autism, susceptibility to, 18}, 615032 (3), Autosomal dominant	Chd8 (MGI:1915022)
chr14	21459019	21476972	14q11.1-q11.2	14q11.2	607466	RAB2B	Ras-associated protein RAB2B	RAB2B	84932	ENSG00000129472			Rab2b (MGI:1923588)
chr14	21477175	21499176	14q11.2	14q11.2	614032	TOX4, LCP1, KIAA0737	TOX high mobility group box family member 4	TOX4	9878	ENSG00000092203			Tox4 (MGI:1915389)
chr14	21498130	21511374	14q11.1	14q11.2	612472	METTL3, IME4	Methyltransferase-like 3	METTL3	56339	ENSG00000165819			Mettl3 (MGI:1927165)
chr14	21521079	21537215	14q11.1-q12	14q11.2	602219	SALL2, HSAL2, COLB	Sal-like 2	SALL2	6297	ENSG00000165821	mutation identified in 1 COLB family	?Coloboma, ocular, autosomal recessive, 216820 (3), Autosomal recessive	Sall2 (MGI:1354373)
chr14	22462931	22466576	14q11.2	14q11.2	186810	TRDC	T-cell receptor delta chain constant region	TRDC	28526		in midst of TCRA		
chr14	22547505	22552131	14q11.2	14q11.2	186880	TRAC, TRCA, TRA, IMD7	T-cell receptor alpha	TRAC	28755		cen--V-C--ter	Immunodeficiency 7, TCR-alpha/beta deficient, 615387 (3), Autosomal recessive	
chr14	22564906	22589236	14q11-q12	14q11.2	600243	DAD1	Defender against cell death 1	DAD1	1603	ENSG00000129562			Dad1 (MGI:101912)
chr14	22766521	22771788	14q11.2	14q11.2	601066	OXA1L	Oxidase (cytochrome c) assembly 1-like	OXA1L	5018	ENSG00000155463			Oxa1l (MGI:1916339)
chr14	22773221	22819810	14q11.2	14q11.2	603593	SLC7A7, LPI	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 7	SLC7A7	9056	ENSG00000155465		Lysinuric protein intolerance, 222700 (3), Autosomal recessive	Slc7a7 (MGI:1337120)
chr14	22829861	22835036	14q11.2	14q11.2	611856	MRPL52	Mitochondrial ribosomal protein L52	MRPL52	122704	ENSG00000172590			Mrpl52 (MGI:1916086)
chr14	22836532	22847599	14q11-q12	14q11.2	600754	MMP14, WNCHRS	Matrix metalloproteinase 14 (membrane-inserted)	MMP14	4323	ENSG00000157227	mutation identified in 1 family	?Winchester syndrome, 277950 (3)	Mmp14 (MGI:101900)
chr14	22871612	22881712	14q11.2	14q11.2	609921	LRP10, LRP9	Low density lipoprotein receptor-related protein 10	LRP10	26020	ENSG00000197324			Lrp10 (MGI:1929480)
chr14	22883164	22887679	14q11.2	14q11.2	616955	REM2	RRAD- and GEM-like GTPase 2	REM2	161253	ENSG00000139890			Rem2 (MGI:2155260)
chr14	22946227	22957141	14q11.2	14q11.2	613431	HAUS4, C14orf94	HAUS augmin-like complex, subunit 4	HAUS4	54930	ENSG00000092036			Haus4 (MGI:1261794)
chr14	23016542	23035219	14q11.2	14q11.2	600306	PSMB5, LMPX	Proteasome subunit, beta type, 5	PSMB5	5693	ENSG00000100804			Psmb5 (MGI:1194513)
chr14	23042166	23044059	14q11.2	14q11.2	611137	PSMB11	Proteasome subunit, beta-type, 11	PSMB11	122706	ENSG00000222028			Psmb11 (MGI:1921152)
chr14	23058563	23095613	14q11.2	14q11.2	604562	ACIN1, KIAA0670	Acinus	ACIN1	22985	ENSG00000100813			Acin1 (MGI:1891824)
chr14	23117305	23119610	14q11.2	14q11.2	600749	CEBPE, CRP1	CCAAT/enhancer-binding protein (C/EBP), epsilon	CEBPE	1053	ENSG00000092067		Specific granule deficiency, 245480 (3), Autosomal recessive	Cebpe (MGI:103572)
chr14	23125294	23183659	14q11.2	14q11.2	604235	SLC7A8, LAT2	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 8	SLC7A8	23428	ENSG00000092068			Slc7a8 (MGI:1355323)
chr14	23273634	23286099	11q11.2	14q11.2	608119	HOMEZ, KIAA1443	Homeodomain leucine zipper-containing factor	HOMEZ	57594	ENSG00000215271			Homez (MGI:2678023)
chr14	23306761	23311758	14q11.2-q12	14q11.2	601931	BCL2L2, BCLW	BCL2-like 2	BCL2L2	599	ENSG00000129473			Bcl2l2 (MGI:108052)
chr14	23320187	23326184	14q11.2-q13	14q11.2	602279	PABPN1, PABP2, PAB2	Poly(A)-binding protein, nuclear 1	PABPN1	8106	ENSG00000100836		Oculopharyngeal muscular dystrophy, 164300 (3), Autosomal dominant	Pabpn1 (MGI:1859158)
chr14	23346303	23354990	14q11.2	14q11.2	611461	SLC22A17, NGALR, BOIT, BOCT, NGALR2, NGALR3	Solute carrier family 22, organic cation transporter, member 17	SLC22A17	51310	ENSG00000092096			Slc22a17 (MGI:1926225)
chr14	23356399	23365632	14q11.2-q12	14q11.2	609906	EFS	Embryonal FYN-associated substrate	EFS	10278	ENSG00000100842			Efs (MGI:105311)
chr14	23372808	23376402	14q11.2	14q11.2	605658	IL25, IL17E	Interleukin 25	IL25	64806	ENSG00000166090			Il25 (MGI:2155888)
chr14	23376431	23379771	14q11.2	14q11.2	607888	CMTM5, CKLFSF5	CKLF-like marvel transmembrane domain-containing 5	CMTM5	116173	ENSG00000166091			Cmtm5 (MGI:2447164)
chr14	23381989	23408276	14q12	14q11.2	160710	MYH6, ASD3, MYHCA, CMD1EE, CMH14, SSS3	Myosin, heavy polypeptide-6, cardiac muscle, alpha	MYH6	4624	ENSG00000197616		Atrial septal defect 3, 614089 (3); Cardiomyopathy, dilated, 1EE, 613252 (3); Cardiomyopathy, hypertrophic, 14, 613251 (3), Autosomal dominant; {Sick sinus syndrome 3}, 614090 (3)	Myh6 (MGI:97255)
chr14	23388595	23388665	14q12	14q11.2	611116	MIR208A, MIRN208A, MIR208, MIRN208	Micro RNA 208A	MIR208A	406990				
chr14	23412737	23435685	14q12	14q11.2	160760	MYH7, CMH1, MPD1, CMD1S, SPMM, SPMD	Myosin, heavy polypeptide-7, cardiac muscle, beta	MYH7	4625	ENSG00000092054	5'-B-4.5kb-A-3'	Cardiomyopathy, dilated, 1S, 613426 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 1, 192600 (3), Autosomal dominant; Laing distal myopathy, 160500 (3), Autosomal dominant; Left ventricular noncompaction 5, 613426 (3), Autosomal dominant; Myopathy, myosin storage, autosomal dominant, 608358 (3), Autosomal dominant; Myopathy, myosin storage, autosomal recessive, 255160 (3), Autosomal recessive; Scapuloperoneal syndrome, myopathic type, 181430 (3), Autosomal dominant	Myh7 (MGI:2155600)
chr14	23415449	23417594	14q11.2	14q11.2	616096	MHRT	Myosin heavy chain-associated RNA transcript, noncoding	MHRT	104564225				
chr14	23417986	23418062	14q11.2	14q11.2	613613	MIR208B, MIRN208B	Micro RNA 208B	MIR208B	100126336				
chr14	23469688	23478192	14q11.2	14q11.2	610777	NGDN, NGD	Neuroguidin	NGDN	25983	ENSG00000129460			Ngdn (MGI:1916216)
chr14	23511759	23559580	14q11.2	14q11.2	611612	THTPA	Thiamine triphosphatase	THTPA	79178	ENSG00000259431			Thtpa (MGI:2446078)
chr14	23520854	23556314	14q11.2	14q11.2	617828	ZFHX2, ZFH5, ZNF409, KIAA1056, KIAA1762, MARSIS	Zinc finger homeobox 2	ZFHX2	85446	ENSG00000136367	mutation identified in 1 MARSIS family	?Marsili syndrome, 147430 (3), Autosomal dominant	Zfhx2 (MGI:2686934)
chr14	23630114	23645638	14q11.2	14q11.2	615194	DHRS2, HEP27	Short-chain dehydrogenase/reductase family, member 2	DHRS2	10202	ENSG00000100867			
chr14	23938730	23955111	14q11.2	14q11.2	616925	DHRS4AS1, AS1DHRS4, C14orf67	DDHRS4 antisense RNA 1, noncoding	DHRS4-AS1	55449				
chr14	23953734	23969278	14q11.2	14q11.2	611596	DHRS4, NRDR	Short-chain dehydrogenase/reductase family, member 4	DHRS4	10901	ENSG00000157326			Dhrs4 (MGI:90169)
chr14	23969873	24006407	14q11.2	14q11.2	615196	DHRS4L2	Short-chain dehydrogenase/reductase family, member 4-like 2	DHRS4L2	317749	ENSG00000187630			
chr14	24007008	24051376	14q11.2	14q11.2	615195	DHRS4L1	Short-chain dehydrogenase/reductase family, member 4-like 1	DHRS4L1	728635	ENSG00000225766			
chr14	24051996	24069727	14q11.2	14q11.2	614716	LRRC16B	Leucine-rich repeat-containing protein 16B	CARMIL3	90668	ENSG00000186648			Carmil3 (MGI:2448573)
chr14	24069832	24078099	14q11.2	14q11.2	605688	CPNE6	Copine VI	CPNE6	9362	ENSG00000100884			Cpne6 (MGI:1334445)
chr14	24078685	24115013	14q11.1-q11.2	14q11-q12	162080	NRL, D14S46E, RP27	Neural retina leucine zipper	NRL	4901	ENSG00000129535		Retinal degeneration, autosomal recessive, clumped pigment type (3); Retinitis pigmentosa 27, 613750 (3), Autosomal dominant	Nrl (MGI:102567)
chr14	24094130	24104131	14q11.2-q12	14q11-q12	614095	PCK2, PEPCK2	Phosphoenolpyruvate carboxykinase 2, mitochondrial	PCK2	5106	ENSG00000100889		PEPCK deficiency, mitochondrial, 261650 (1), Autosomal recessive	Pck2 (MGI:1860456)
chr14	24100000	57600000	14q12-q22		602086	ARVD3	Arrhythmogenic right ventricular dysplasia 3	ARVD3	424		?distinct from ARVD1	Arrhythmogenic right ventricular dysplasia 3, 602086 (2), Autosomal dominant	
chr14	24100000	32900000	14q12		600792	DFNB5	Deafness, autosomal recessive 5	DFNB5	1697			Deafness, autosomal recessive 5, 600792 (2), Autosomal recessive	
chr14	24100000	50400000	14q12-q21		611252	SPG32	Spastic paraplegia-32	SPG32	724107		between D14S264 and D14S978	Spastic paraplegia 32, autosomal recessive, 611252 (2), Autosomal recessive	
chr14	24114696	24125241	14q11.2	14q12	613317	DCAF11, WDR23	DDB1- and CUL4-associated factor 11	DCAF11	80344	ENSG00000100897			Dcaf11 (MGI:90168)
chr14	24131465	24132848	14q12	14q12	612028	FITM1, FIT1	Fat storage-inducing transmembrane protein 1	FITM1	161247	ENSG00000139914			Fitm1 (MGI:1915930)
chr14	24136157	24138966	14q11.2	14q12	600654	PSME1, IFI5111	Proteasome activator subunit-1	PSME1	5720	ENSG00000092010			Psme1 (MGI:1096367)
chr14	24143364	24146645	14q11.2	14q12	602161	PSME2	Proteasome activator subunit-2	PSME2	5721	ENSG00000100911			Psme2 (MGI:1096365)
chr14	24146874	24160660	14q11.2	14q12	612487	RNF31, ZIBRA	Ring finger protein 31	RNF31	55072	ENSG00000092098			Rnf31 (MGI:1934704)
chr14	24161212	24166564	14q11.2	14q12	147574	ISGF3, ISGF3G	Interferon-stimulated gene transcription factor 3, gamma, 48kD	IRF9	10379	ENSG00000213928			Irf9 (MGI:107587)
chr14	24171930	24180407	14q11.2-q12	14q12	608193	REC8L1, REC8	Rec8, S. pombe, homolog of	REC8	9985	ENSG00000100918			Rec8 (MGI:1929645)
chr14	24205523	24208361	14q11.2	14q12	610711	TSSK4, TSSK5	Testis-specific serine/threonine kinase 4	TSSK4	283629	ENSG00000139908			Tssk4 (MGI:1918349)
chr14	24209580	24213829	14q12	14q12	610051	CHMP4A, SNF7	CHMP family, member 4A	CHMP4A	29082	ENSG00000254505			
chr14	24216850	24232369	14q12	14q12	603171	NEDD8	Neural precursor cel expressed, developmentally downregulated 8	NEDD8	4738	ENSG00000129559			Nedd8 (MGI:97301)
chr14	24232421	24239241	14q11-q21	14q12	610781	GMPR2	Guanosine monophosphate reductase 2	GMPR2	51292	ENSG00000100938			Gmpr2 (MGI:1917903)
chr14	24239640	24242673	14q12	14q12	604319	TINF2, TIN2, DKCA3	TRF1-interacting nuclear factor 2	TINF2	26277	ENSG00000092330		Dyskeratosis congenita, autosomal dominant 3, 613990 (3), Autosomal dominant; Revesz syndrome, 268130 (3), Autosomal dominant	Tinf2 (MGI:107246)
chr14	24249113	24263209	14q11.2	14q12	190195	TGM1, ICR2, ARCI1	Transglutaminase-1 (K polypeptide epidermal type I, protein-glutamine gamma-glutamyltransferase)	TGM1	7051	ENSG00000092295		Ichthyosis, congenital, autosomal recessive 1, 242300 (3), Autosomal recessive	Tgm1 (MGI:98730)
chr14	24265537	24271626	14q11.2	14q12	601905	RABGGTA	Rab geranylgeranyltransferase, alpha subunit	RABGGTA	5875	ENSG00000100949			Rabggta (MGI:1860443)
chr14	24290597	24299832	14q21.3	14q12	610410	DHRS1	Short-chain dehydrogenase/reductase family, member 1	DHRS1	115817	ENSG00000157379			Dhrs1 (MGI:1196314)
chr14	24310150	24312052	14q11.2-q12	14q12	605773	LTB4R2, BLTR2, BLT2	Leukotriene B4 receptor 2	LTB4R2	56413	ENSG00000213906			Ltb4r2 (MGI:1888501)
chr14	24311498	24318035	14q11.2-q12	14q12	601531	LTB4R, CMKRL1, P2RY7, BLTR	Leukotriene b4 receptor (purinergic receptor P2Y, G protein-coupled, 7; chemokine receptor-like 1)	LTB4R	1241	ENSG00000213903			Ltb4r1 (MGI:1309472)
chr14	24318348	24335070	14q11.2	14q12	600292	ADCY4	Adenylate cyclase-4	ADCY4	196883	ENSG00000129467			Adcy4 (MGI:99674)
chr14	24336020	24340035	14q11.2	14q12	605817	RIPK3, RIP3	Receptor-interacting serine/threonine kinase 3	RIPK3	11035	ENSG00000129465			Ripk3 (MGI:2154952)
chr14	24366910	24379603	Chr.14	14q12	602699	NFATC4	Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 4	NFATC4	4776	ENSG00000100968			Nfatc4 (MGI:1920431)
chr14	24426531	24429524	14q12	14q12	612978	CBLN3	Precerebellin 3	CBLN3	643866	ENSG00000139899			Cbln3 (MGI:1889286)
chr14	24439764	24442904	14q12	14q12	616162	SDR39U1	Short-chain dehydrogenase/reductase family 39U, member 1	SDR39U1	56948	ENSG00000100445			Sdr39u1 (MGI:1916876)
chr14	24505354	24508264	14q11.2	14q12	118938	CMA1	Chymase-1, mast cell	CMA1	1215	ENSG00000092009			Cma1 (MGI:96941)
chr14	24573517	24576259	14q11.2	14q12	116830	CTSG	Cathepsin G	CTSG	1511	ENSG00000100448			Ctsg (MGI:88563)
chr14	24606479	24609762	14q11.2	14q12	116831	GZMH, CTSGL2	Granzyme H (cathepsin G-like 2)	GZMH	2999	ENSG00000100450			Gzmd,Gzme,Gzmf,Gzmg (MGI:109253,MGI:109255,MGI:109265,MGI:109254)
chr14	24630953	24634268	14q11.2	14q12	123910	GZMB, CTLA1, CSPB	Granzyme B (cytotoxic T-lymphocyte-associated serine esterase-1; cathepsin G-like 1)	GZMB	3002	ENSG00000100453			
chr14	24809653	25050296	14q12	14q12	607958	STXBP6, AMISYN, HSPC156	Syntaxin-binding protein 6	STXBP6	29091	ENSG00000168952			Stxbp6 (MGI:2384963)
chr14	26445882	26597753	14q12	14q12	602157	NOVA1	NOVA alternative splicing regulator 1	NOVA1	4857	ENSG00000139910			Nova1 (MGI:104297)
chr14	28767071	28770276	14q13	14q12	164874	FOXG1, FOXG1B, FKHL1, FKH2, QIN, BF1	Forkhead box G1B	FOXG1	2290	ENSG00000176165		Rett syndrome, congenital variant, 613454 (3), Autosomal dominant	Foxg1 (MGI:1347464)
chr14	29576478	29927804	14q12	14q12	605435	PRKD1, PRKCM, PKD, CHDED	Protein kinase D1	PRKD1	5587	ENSG00000184304		Congenital heart defects and ectodermal dysplasia, 617364 (3), Autosomal dominant	Prkd1 (MGI:99879)
chr14	30559122	30620063	14q12	14q12	611299	G2E3, KIAA1333	G2/M phase-specific E3 ubiquitin ligase	G2E3	55632	ENSG00000092140			G2e3 (MGI:2444298)
chr14	30874495	30890617	14q12-q13	14q12	603196	COCH, DFNA9	Cochlin	COCH	1690	ENSG00000100473		Deafness, autosomal dominant 9, 601369 (3), Autosomal dominant	Coch (MGI:1278313)
chr14	30893798	31026400	14q12	14q12	614766	STRN3, SG2NA	Striatin, calmodulin-binding protein 3	STRN3	29966	ENSG00000196792			Strn3 (MGI:2151064)
chr14	31025105	31096449	14q12	14q12	607243	AP4S1, CPSQ6, SPG52	Adaptor-related protein complex 4, sigma-1 subunit	AP4S1	11154	ENSG00000100478		Spastic paraplegia 52, autosomal recessive, 614067 (3), Autosomal recessive	Ap4s1 (MGI:1337065)
chr14	31482943	31487944	14q12	14q12	610118	GPR33	G protein-coupled receptor 33	GPR33	2856	ENSG00000214943			Gpr33 (MGI:1277106)
chr14	31561384	31861292	14q12	14q12	613621	NUBPL, IND1	Nucleotide-binding protein-like protein	NUBPL	80224	ENSG00000151413		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Nubpl (MGI:1924076)
chr14	32072587	32159727	14q12	14q12	602680	ARHGAP5, RHOGAP5	RHO GTPase-activating protein 5	ARHGAP5	394	ENSG00000100852			Arhgap5 (MGI:1332637)
chr14	32203609	32833998	14q	14q12	604691	ADAP6, ADAP100	A-kinase anchor protein 6	AKAP6	9472	ENSG00000151320			Akap6 (MGI:3050566)
chr14	32900000	37400000	14q13		609408	HPE8	Holoprosencephaly 8		619406		between D14S49 and D14S1014	Holoprosencephaly 8, 609408 (2)	
chr14	32900000	50400000	14q13-q21		608831	RLS2	Restless legs syndrome, susceptibility to, 2		450097		max lod at D14S288	{Restless legs syndrome 2}, 608831 (2)	
chr14	32934784	33804175	14q13	14q13.1	609430	NPAS3, MOP6	Neuronal PAS domain protein 3	NPAS3	64067	ENSG00000151322			Npas3 (MGI:1351610)
chr14	33924214	33951077	14q13.1	14q13.1	606426	EGLN3, PHD3, HIFP4H3	Egl9, C. elegans, homolog of, 3	EGLN3	112399	ENSG00000129521			Egln3 (MGI:1932288)
chr14	34432937	34462261	14q13.1	14q13.1	613540	SPTSSA, C14orf147, SSSPTA	Serine palmitoyltransferase, small subunit, A	SPTSSA	171546	ENSG00000165389			Sptssa (MGI:1913399)
chr14	34561092	34630182	14q13.1	14q13.1	606098	SNX6	Sorting nexin 6	SNX6	58533	ENSG00000129515			Snx6 (MGI:1919433)
chr14	34710381	34714822	14q12	14q13.1	601443	CFL2, NEM7	Cofilin 2, muscle	CFL2	1073	ENSG00000165410		Nemaline myopathy 7, autosomal recessive, 610687 (3), Autosomal recessive	Cfl2 (MGI:101763)
chr14	34752730	34875646	14q12-q13	14q13.1-q13.2	605680	BAZ1A	Bromodomain adjacent to zinc finger domain, 1A	BAZ1A	11177	ENSG00000198604			Baz1a (MGI:1309478)
chr14	34982897	35029566	14q13.2	14q13.2	604857	SRP54	Signal recognition particle, 54kD	SRP54	6729	ENSG00000100883			Srp54a,Srp54b (MGI:3714357,MGI:1346087)
chr14	35085466	35122661	14q13.2	14q13.2	615902	PPP2RC2, G5PR	Protein phosphatase 2, regulatory subunit B-double prime, gamma	PPP2R3C	55012	ENSG00000092020			Ppp2r3c (MGI:1930009)
chr14	35122302	35274077	14q13	14q13.2	609947	KIAA0391	KIAA0391 gene	KIAA0391	9692	ENSG00000100890			1110008L16Rik (MGI:1913382)
chr14	35278557	35317478	14q13	14q13.2	602855	PSMA6, PROS27, P27K	Proteasome subunit, alpha-type, 6	PSMA6	5687	ENSG00000100902		{Myocardial infarction, susceptibility to}, 608446 (3)	Psma6 (MGI:1347006)
chr14	35401509	35404753	14q13	14q13.2	164008	NFKBIA, IKBA	Nuclear factor of kappa light chain gene enhancer in B-cells inhibitor, alpha	NFKBIA	4792	ENSG00000100906		Ectodermal dysplasia, anhidrotic, with T-cell immunodeficiency, 612132 (3), Autosomal dominant	Nfkbia (MGI:104741)
chr14	35534041	35537053	14q13.2	14q13.2	614027	INSM2, IA6	Insulinoma-associated 2	INSM2	84684	ENSG00000168348			Insm2 (MGI:1930787)
chr14	35538351	35809322	14q13.2	14q13.2	608884	RALGAPA1, GARNL1, TULIP1, GRIPE, KIAA0884	Ral GTPase activating protein, alpha subunit 1 (catalytic)	RALGAPA1	253959	ENSG00000174373	pseudogene on 9q31.1		Ralgapa1 (MGI:1931050)
chr14	36100000	43000000	14q13.3-q21.1		604461	HPV6AI1	Human papillomavirus type 6A integration site 1	HPV6AI1	3259		previously assigned to 10q24		
chr14	36135709	36176650	14q13.3	14q13.3	614821	PTCSC3	PTCSC3 gene	PTCSC3	100886964				
chr14	36298557	36320675	14q13.3	14q13.3	609431	MBIP	MAP3K12-binding inhibitory protein	MBIP	51562	ENSG00000151332			Mbip (MGI:1918320)
chr14	36473287	36519520	14q13.3	14q13.3	617860	SFTA3, SPH	Surfactant-associated protein 3	SFTA3	253970	ENSG00000229415			
chr14	36516396	36520224	14q13	14q13.3	600635	NKX2-1, TITF1, NKX2A, TTF1, NMTC1	NK2 homeobox 1	NKX2-1	7080	ENSG00000136352		Chorea, hereditary benign, 118700 (3), Autosomal dominant; Choreoathetosis, hypothyroidism, and neonatal respiratory distress, 610978 (3), Autosomal dominant; {Thyroid cancer, nonmedullary, 1}, 188550 (3), Autosomal dominant	Nkx2-1 (MGI:108067)
chr14	36580010	36582613	14q12-q13	14q13.3	603245	NKX2-8, NKX2H, NKX2.8	NK2 homeobox 8	NKX2-8	26257	ENSG00000136327			Nkx2-9 (MGI:1270158)
chr14	36657567	36677806	14q12-q13	14q13.3	167416	PAX9, STHAG3	Paired box gene 9	PAX9	5083	ENSG00000198807		Tooth agenesis, selective, 3, 604625 (3), Autosomal dominant	Pax9 (MGI:97493)
chr14	36677317	37172659	14q11.2	14q13.3	607571	SLC25A21, ODC	Solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	SLC25A21	89874	ENSG00000183032			Slc25a21 (MGI:2445059)
chr14	37197887	37579206	14q13	14q13.3-q21.1	606850	MIPOL1	MIPOL1 gene	MIPOL1	145282	ENSG00000151338			Mipol1 (MGI:1920740)
chr14	37589551	37595119	14q13	14q21.1	602294	FOXA1, HNF3A	Forkhead box A1 (hepatocyte nuclear factor-3, alpha)	FOXA1	3169	ENSG00000129514			Foxa1 (MGI:1347472)
chr14	38207998	38213062	14q13	14q21.1	182451	SSTR1	Somatostatin receptor-1	SSTR1	6751	ENSG00000139874			Sstr1 (MGI:98327)
chr14	38253999	38256369	14q21.1	14q21.1	616845	CLEC14A	C-type lectin domain family 14, member A	CLEC14A	161198	ENSG00000176435			Clec14a (MGI:1914114)
chr14	39031918	39103527	14q21.1	14q21.1	610511	SEC23A, CLSD	Sec23, S. cerevisiae, homolog of, A	SEC23A	10484	ENSG00000100934		Craniolenticulosutural dysplasia, 607812 (3), Autosomal recessive	Sec23a (MGI:1349635)
chr14	39114260	39136972	14q21.1	14q21.1	602595	GEMIN2, SIP1	GEM-associated protein 2	GEMIN2	8487	ENSG00000092208			Gemin2 (MGI:1913853)
chr14	39147810	39170429	14q21.1	14q21.1	610397	TRAPPC6B, TPC6, NEDMEBA	Trafficking protein particle complex, subunit 6B	TRAPPC6B	122553	ENSG00000182400		Neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy, 617862 (3)	Trappc6b (MGI:1925482)
chr14	39175182	39183217	Chr.14	14q21.1	603154	PNN, DRS	Pinin	PNN	5411	ENSG00000100941			Pnn (MGI:1100514)
chr14	39233915	39388512	14q	14q21.1	602132	MGEA, MEA6	Meningioma-expressed antigen 6	MIA2	4253	ENSG00000150527	?pseudogenes on other chromosomes		
chr14	39396372	39432499	14q13.3	14q21.1	609103	FBXO33, FBX33, BMND12	F-box only protein 33	FBXO33	254170	ENSG00000165355			Fbxo33 (MGI:1917861)
chr14	41606855	41904548	14q21.2	14q21.1	612811	LRFN5, SALM5	Leucine-rich repeat and fibronectin type III domain-containing protein 5	LRFN5	145581	ENSG00000165379			Lrfn5 (MGI:2144814)
chr14	43000000	57600000	14q21.2-q22.3		607501	MGR4, MGOA	Migraine without aura, susceptibility to, 4		338342		between D14S976 and D14S978	{Migraine without aura, susceptibility to, 4}, 607501 (2), Autosomal dominant	
chr14	44504148	44507295	14q21.3	14q21.2	611779	FSCB, C14orf155	Fibrous sheath cabyr-binding protein	FSCB	84075	ENSG00000189139			
chr14	44962189	45074430	14q21.2	14q21.2	617618	TOGARAM1, FAM179B, KIAA0423	TOG array regulator of axonemal microtubules 1	TOGARAM1	23116	ENSG00000198718			Togaram1 (MGI:2684313)
chr14	45084098	45115600	14q21.2	14q21.2	614907	PRPF39	Precursor mRNA-processing factor 39, S. cerevisiae, homolog of	PRPF39	55015	ENSG00000185246			Prpf39 (MGI:104602)
chr14	45115291	45134528	14q21.2	14q21.2	186947	FKBP3, FKBP25	FK506-binding protein 3	FKBP3	2287	ENSG00000100442			Fkbp3 (MGI:1353460)
chr14	45135938	45200889	14q21.3	14q21.2	609644	FANCM, KIAA1596	FANCM gene	FANCM	57697	ENSG00000187790			Fancm (MGI:2442306)
chr14	46836517	47675315	14q21	14q21.3	611128	MDGA2	MAM domain-containing glycosylphosphatidylinositol anchor 2	MDGA2	161357	ENSG00000139915			Mdga2 (MGI:2444706)
chr14	49570983	49598709	14q	14q21.3	603633	RPS29, DBA13	Ribosomal protein S29	RPS29	6235	ENSG00000213741		Diamond-Blackfan anemia 13, 615909 (3), Autosomal dominant	Rps29 (MGI:107681)
chr14	49586579	49586877	14q22.1	14q21.3	612177	RN7SL1, 7SL, 7L1A	RNA, 7SL, cytoplasmic 1	RN7SL1	6029				
chr14	49618687	49620684	Chr.14	14q21.3	180469	RPL36AL, RPL36A	Ribosomal protein L36a-like	RPL36AL	6166	ENSG00000165502			Rpl36al (MGI:1913733)
chr14	49620770	49623480	14q21	14q21.3	602616	MGAT2, CDGS2, CDG2A	Mannosyl (alpha-1,6-)-glycoprotein beta-1,2-N-acetylglucosaminyl- transferase	MGAT2	4247	ENSG00000168282		Congenital disorder of glycosylation, type IIa, 212066 (3), Autosomal recessive	Mgat2 (MGI:2384966)
chr14	49625173	49635229	14q21.3	14q21.3	612517	KTU, C14orf104, CILD10	Kintoun, Medaka, homolog of	DNAAF2	55172	ENSG00000165506		Ciliary dyskinesia, primary, 10, 612518 (3)	Dnaaf2 (MGI:1923566)
chr14	49643551	49688416	14q13-q21	14q21.3	602670	POLE2, DPE2	Polymerase, DNA, epsilon-2	POLE2	5427	ENSG00000100479			Pole2 (MGI:1197514)
chr14	49690461	49753151	14q21.3	14q21.3	611281	KLHDC1	KELCH domain-containing protein 1	KLHDC1	122773	ENSG00000197776			Klhdc1 (MGI:2672853)
chr14	49767607	49786384	14q21.3	14q21.3	611280	KLHDC2, HCLP1	KELCH domain-containing protein 2	KLHDC2	23588	ENSG00000165516			Klhdc2 (MGI:1916804)
chr14	49782082	49853202	14q22	14q21.3	608378	NEMF, SDCCAG1	Nuclear export mediator factor	NEMF	9147	ENSG00000165525			Nemf (MGI:1918305)
chr14	49853615	49853913	14q22.1	14q21.3	612180	RN7SL3	RNA, 7SL, cytoplasmic 3	RN7SL3	378707				
chr14	49862550	49862848	14q22.1	14q21.3	612179	RN7SL2, 7L1C	RNA, 7SL, cytoplasmic 2	RN7SL2	378706				
chr14	49893017	49897053	14q21.3	14q21.3	600464	ARF6	ADP-ribosylation factor 6	ARF6	382	ENSG00000165527			Arf6 (MGI:99435)
chr14	50100455	50116578	14q21.3	14q21.3	615260	VCPKMT, METTL21D, C14orf138	Valosin-containing protein lysine methyltransferase	VCPKMT	79609	ENSG00000100483			Vcpkmt (MGI:2684917)
chr14	50117118	50231692	14q21	14q21.3	601247	SOS2, NS9	Son of sevenless, Drosophila, homolog of, 2	SOS2	6655	ENSG00000100485		Noonan syndrome 9, 616559 (3), Autosomal dominant	Sos2 (MGI:98355)
chr14	50242433	50312228	14q22.1	14q21.3	609584	L2HGDH, C14orf160, L2HGA	L-2-hydroxyglutarate dehydrogenase	L2HGDH	79944	ENSG00000087299		L-2-hydroxyglutaric aciduria, 236792 (3), Autosomal recessive	L2hgdh (MGI:2384968)
chr14	50329403	50397403	14q21.3	14q21.3	603441	CDKL1, KKIALRE, p42	Cyclin-dependent kinase-like 1	CDKL1	8814	ENSG00000100490			Cdkl1 (MGI:1918341)
chr14	50400000	67400000	14q22-q23		115650	CTRCT32, CTAA1, CAP, CTPP5	Cataract 32, multiple types	CTAA1	1483		between D14S980 and D14S1069	Cataract 32, multiple types, 115650 (2), Autosomal dominant	
chr14	50400000	57600000	14q22.1-q22.3		609640	FRIASS, DEL14q22, C14DELq22	Frias syndrome				deletion spans 4.1 Mb on 14q22.1-q22.3	Frias syndrome, 609640 (4), Autosomal dominant	
chr14	50400000	73300000	14q22.1-q24.2		255500	MYP18	Myopia 18	MYP18	100359406		between D14S984 and D14S999	Myopia 18, 255500 (2), Autosomal recessive	
chr14	50533081	50633067	14q11-q21	14q22.1	606439	ATL1, SPG3A, HSN1D	Atlastin GTPase 1	ATL1	51062	ENSG00000198513		Neuropathy, hereditary sensory, type ID, 613708 (3), Autosomal dominant; Spastic paraplegia 3A, autosomal dominant, 182600 (3), Autosomal dominant	Atl1 (MGI:1921241)
chr14	50418491	50561125	Chr.14	14q22.1	604923	MAP4K5, MAPKKKK5	Mitogen-activated protein kinase kinase kinase kinase-5	MAP4K5	11183	ENSG00000012983			Map4k5 (MGI:1925503)
chr14	50633103	50668352	14q13-q23	14q22.1	607203	WW45, SAV	WW domain-containing protein, 45kD	SAV1	60485	ENSG00000151748			Sav1 (MGI:1927144)
chr14	50719762	50831139	14q22.1	14q22.1	608684	NIN, KIAA1565, SCKL7	Ninein	NIN	51199	ENSG00000100503	mutation identified in 1 SCKL7 family	?Seckel syndrome 7, 614851 (3), Autosomal recessive	Nin (MGI:105108)
chr14	50905216	50944529	14q22.1	14q22.1	613741	PYGL	Phosphorylase, glycogen, liver	PYGL	5836	ENSG00000100504		Glycogen storage disease VI, 232700 (3), Autosomal recessive	Pygl (MGI:97829)
chr14	50975260	51105172	14q21-q24	14q22.1	606555	TRIM9, SPRING, KIAA0282	Tripartite motif-containing protein 9	TRIM9	114088	ENSG00000100505			Trim9 (MGI:2137354)
chr14	51240167	51257654	14q22.1	14q22.1	610527	TXNDC1, TMX	Thioredoxin domain-containing 1	TMX1	81542	ENSG00000139921			Tmx1 (MGI:1919986)
chr14	51489099	51730726	14q22.1	14q22.1	614555	FRMD6, WILLIN, C14orf31	FERM domain-containing protein 6	FRMD6	122786	ENSG00000139926			Frmd6 (MGI:2442579)
chr14	51847130	51969799	14q21	14q22.1	606981	GNG2	Guanine nucleotide-binding protein, gamma-2	GNG2	54331	ENSG00000186469			Gng2 (MGI:102705)
chr14	51989509	52004701	14q22.1	14q22.1	610858	C14orf166, CGI99	Chromosome 14 open reading frame 166	RTRAF	51637	ENSG00000087302			Rtraf (MGI:1915295)
chr14	52004801	52069227	Chr.14	14q22.1	605399	NID2	Nidogen 2	NID2	22795	ENSG00000087303			Nid2 (MGI:1298229)
chr14	52267255	52276723	14q22.1	14q22.1	604687	PTGDR, AS1, ASRT1	Prostaglandin D2 receptor	PTGDR	5729	ENSG00000168229		{Asthma, susceptibility to, 1}, 607277 (3)	Ptgdr (MGI:102966)
chr14	52314297	52328605	14q22	14q22.1	176804	PTGER2	Prostaglandin E receptor 2, EP2 subtype, 53kD	PTGER2	5732	ENSG00000125384		{Asthma, aspirin-induced, susceptibility to}, 208550 (3), Autosomal recessive	Ptger2 (MGI:97794)
chr14	52430589	52552582	14q22.1	14q22.1	616179	TXNDC16, KIAA1344	Thioredoxin domain-containing protein 16	TXNDC16	57544	ENSG00000087301			Txndc16 (MGI:1917811)
chr14	52639914	52695930	14q22.1	14q22.1	615435	ERO1L, ERO1LA	Endoplasmic reticulum oxidoreduction 1-like	ERO1A	30001	ENSG00000197930			Ero1l (MGI:1354385)
chr14	52707156	52727997	14q22.1	14q22.1	602708	PSMC6	Proteasome 26S subunit, ATPase, 6	PSMC6	5706	ENSG00000100519	previously assigned to 12q15 by FISH		Psmc6 (MGI:1914339)
chr14	52730158	52774988	14q22.1	14q22.1	615814	STYX	Serine/threonine/tyrosine-interacting protein	STYX	6815	ENSG00000198252			Styx (MGI:1891150)
chr14	52775192	52791667	14q22.1	14q22.1	616510	GNPNAT1, GNA1	Glucosamine-phosphate N-acetyltransferase 1	GNPNAT1	64841	ENSG00000100522			Gnpnat1 (MGI:1858963)
chr14	52857270	52951096	14q22.1	14q22.1	607746	FERMT2, PLEKHC1, MIG2, UNC112, KIND2	Fermitin family, Drosophila, homolog of, 2	FERMT2	10979	ENSG00000073712			Fermt2 (MGI:2385001)
chr14	53036739	53153327	14q22.1	14q22.1	614603	DDHD1, PAPLA1, KIAA1705, SPG28	DDHD domain-containing protein 1	DDHD1	80821	ENSG00000100523		Spastic paraplegia 28, autosomal recessive, 609340 (3), Autosomal recessive	Ddhd1 (MGI:2150302)
chr14	53600000	55000000	14q22.2		612589	CRCS8	Colorectal cancer, susceptibility to, 8		100271690		associated with rs4444235	{Colorectal cancer, susceptibility to, 8}, 612589 (2)	
chr14	53949735	53956890	14q22.2	14q22.2	112262	BMP4, BMP2B1, BMP2B, MCOPS6, OFC11	Bone morphogenetic protein-4	BMP4	652	ENSG00000125378		Microphthalmia, syndromic 6, 607932 (3), Autosomal dominant; Orofacial cleft 11, 600625 (3)	Bmp4 (MGI:88180)
chr14	54396867	54420217	14q22	14q22.2	123832	CDKN3	Cyclin-dependent kinase inhibitor 3 (CDK2-associated dual specificity phosphatase)	CDKN3	1033	ENSG00000100526			Cdkn3 (MGI:1919641)
chr14	54426928	54441429	14q22.2	14q22.2	611287	CNIH, TGAM77	Cornichon, Drosophila, homolog of	CNIH1	10175	ENSG00000100528			Cnih1 (MGI:1277202)
chr14	54474490	54489025	14q22.2	14q22.2	601713	GMFB, GMF	Glia maturation factor, beta	GMFB	2764	ENSG00000197045			Gmfb (MGI:1927133)
chr14	54509868	54539309	14q22.1	14q22.2	606138	GCRRF1, CGR19	Cell growth regulator with ring finger domain 1	CGRRF1	10668	ENSG00000100532			Cgrrf1 (MGI:1916368)
chr14	54567096	54793314	14q22.2	14q22.2	610747	SAMD4A, SMAUG1, KIAA1053	Sterile alpha motif domain-containing 4A	SAMD4A	23034	ENSG00000020577			Samd4 (MGI:1921730)
chr14	54842004	54902823	14q22.1-q22.2	14q22.2	600225	GCH1, DYT5, HPABH4B	GTP cyclohydrolase 1	GCH1	2643	ENSG00000131979		Dystonia, DOPA-responsive, with or without hyperphenylalaninemia, 128230 (3), Autosomal recessive, Autosomal dominant; Hyperphenylalaninemia, BH4-deficient, B, 233910 (3), Autosomal recessive	Gch1 (MGI:95675)
chr14	54938937	55027105	14q22.2	14q22.2-q22.3	608126	WDHD1, AND1	WD repeat and HMG-box DNA binding protein 1	WDHD1	11169	ENSG00000198554			Wdhd1 (MGI:2443514)
chr14	55027125	55049488	14q22.3	14q22.3	616337	SOCS4, SOCS7	Suppressor of cytokine signaling 4	SOCS4	122809	ENSG00000180008			Socs4 (MGI:1914546)
chr14	55051643	55070193	14q22.3	14q22.3	617226	MAP1IP1L, MISS	Mitogen-activated protein kinase 1-interacting protein 1-like protein	MAPK1IP1L	93487	ENSG00000168175			Mapk1ip1l (MGI:2444022)
chr14	55129216	55145429	14q21-q22	14q22.3	153619	LGALS3, MAC2, GALBP	Lectin, galactose-binding, soluble, 3	LGALS3	3958	ENSG00000131981	assigned earlier to 1p13		Lgals3 (MGI:96778)
chr14	55148115	55191677	14q22.3	14q22.3	617859	DLGAP5, DLG7, HURP, KIAA0008	Discs large-associated protein 5	DLGAP5	9787	ENSG00000126787			Dlgap5 (MGI:2183453)
chr14	55229192	55229935	14q24.3	14q22.3	600012	UBE2L1, UBCL, UBC4	Ubiquitin-conjugating enzyme E2L 1	UBE2L1	283556				
chr14	55271302	55353610	14q22.2	14q22.3	609104	FBXO34, FBX34	F-box only protein 34	FBXO34	55030	ENSG00000178974			Fbxo34 (MGI:1926188)
chr14	55366390	55411857	14q22.3	14q22.3	613515	ATG14, ATG14L, KIAA0831, BARKOR	Autophagy 14, S. cerevisiae, homolog of	ATG14	22863	ENSG00000126775			Atg14 (MGI:1261775)
chr14	55580206	55684583	14q22	14q22.3	600381	KTN1, CG1	Kinectin	KTN1	3895	ENSG00000126777			
chr14	56118328	56301585	14q21	14q22.3	614798	PELI2	Pellino, Drosophila, homolog of, 2	PELI2	57161	ENSG00000139946			Peli2 (MGI:1891445)
chr14	56579791	56660628	14q22.3	14q22.3	617449	TMEM260, C14orf101, SHDRA	Transmembrane protein 260	TMEM260	54916	ENSG00000070269		Structural heart defects and renal anomalies syndrome, 617478 (3), Autosomal recessive	Tmem260 (MGI:2443219)
chr14	56800706	56810475	14q22.3	14q22.3	600037	OTX2, MCOPS5, CPHD6	Orthodenticle, Drosophila, homolog of, 2	OTX2	5015	ENSG00000165588		Microphthalmia, syndromic 5, 610125 (3), Autosomal dominant; Pituitary hormone deficiency, combined, 6, 613986 (3), Autosomal dominant; Retinal dystrophy, early-onset, with or without pituitary dysfunction, 610125 (3), Autosomal dominant	Otx2 (MGI:97451)
chr14	57202475	57268898	14q22.3	14q22.3	604469	EXOC5, SEC10L1	Exocyst complex component 5	EXOC5	10640	ENSG00000070367			Exoc5 (MGI:2145645)
chr14	57268887	57298741	14q22.3	14q22.3	614368	AP5M1, MUDENG, MUD, C14orf108	Adaptor-related protein complex 5, mu-1 subunit	AP5M1	55745	ENSG00000053770			Ap5m1 (MGI:1921635)
chr14	57600000	67400000	14q23		612162	ANIB8	Aneurysm, intracranial berry, 8		100188886		associated with rs767603	Aneurysm, intracranial berry, 8, 612162 (2)	
chr14	57600000	67400000	14q23		606972	EIG2	Epilepsy, idiopathic generalized, susceptibility to, 2		353124			{Epilepsy, idiopathic generalized, susceptibility to, 2}, 606972 (2)	
chr14	58244804	58272008	14q23	14q23.1	176843	PSMA3	Proteasome (prosome, macropain) subunit, alpha type, 3	PSMA3	5684	ENSG00000100567			Psma3 (MGI:104883)
chr14	58298384	58373732	14q23.1	14q23.1	180201	ARID4A, RBP1, RBBP1	AT-rich interactive domain-containing protein 4A	ARID4A	5926	ENSG00000032219			Arid4a (MGI:2444354)
chr14	58408493	58427613	14q21	14q23.1	607384	TIMM9, TIM9	Translocase of inner mitochondrial membrane 9, yeast, homolog of	TIMM9	26520	ENSG00000100575			Timm9 (MGI:1353436)
chr14	58427384	58548830	14q23.1	14q23.1	610178	KIAA0586, TALPID3, JBTS23, SRTD14	KIAA0586 gene	KIAA0586	9786	ENSG00000100578		Joubert syndrome 23, 616490 (3), Autosomal recessive; Short-rib thoracic dysplasia 14 with polydactyly, 616546 (3), Autosomal recessive	2700049A03Rik (MGI:1924217)
chr14	58634067	58648320	14q22.3	14q23.1	607861	DACT1, DPR1, DAPPER1, FRODO, TBS2	Dapper, antagonist of beta-catenin, 1	DACT1	51339	ENSG00000165617	mutation identified in 1 TBS2 family	?Townes-Brocks syndrome 2, 617466 (3), Autosomal dominant	Dact1 (MGI:1891740)
chr14	59188656	59371404	14q23.1	14q23.1	606626	DAAM1, KIAA0666	Dishevelled-associated activator of morphogenesis 1	DAAM1	23002	ENSG00000100592			Daam1 (MGI:1914596)
chr14	59452772	59465635	14q23.1	14q23.1	607970	GPR135	G protein-coupled receptor 135	GPR135	64582	ENSG00000181619			Gpr135 (MGI:2676315)
chr14	59472610	59505265	14q23.1	14q23.1	614811	L3HYPDH, C14orf149	L-3-hydroxyproline dehydratase, trans	L3HYPDH	112849	ENSG00000126790			L3hypdh (MGI:1914467)
chr14	59484442	59505406	14q23.1	14q23.1	611176	JKAMP, C24orf100, JAMP	JNK1/MAPK8-associated membrane protein	JKAMP	51528	ENSG00000050130			Jkamp (MGI:1915057)
chr14	59595975	59871287	14q21-q22	14q23.1	600865	RTN1, NSP	Reticulon 1 (neuroendocrine-specific protein)	RTN1	6252	ENSG00000139970			Rtn1 (MGI:1933947)
chr14	60144118	60169863	14q23.1	14q23.1	612833	DHRS7, RETSDR4	Short-chain dehydrogenase/reductase family, member 7	DHRS7	51635	ENSG00000100612			Dhrs7 (MGI:1913625)
chr14	60245751	60299086	14q23.1	14q23.1	606108	PPM1A, PP2CA	Protein phosphatase, magnesium/manganese-dependent, 1A	PPM1A	5494	ENSG00000100614			Ppm1a (MGI:99878)
chr14	60435953	60499773	14q23.1	14q23.1	617307	C14orf39, SIX6OS1	Chromosome 14 open reading frame 39	C14orf39	317761	ENSG00000179008			4930447C04Rik (MGI:1923051)
chr14	60509219	60511806	14q23	14q23.1	606326	SIX6, ODRMD	Sine oculis homeo box, Drosophila, homolog of, 6	SIX6	4990	ENSG00000184302		Optic disc anomalies with retinal and/or macular dystrophy, 212550 (3), Autosomal recessive	Six6 (MGI:1341840)
chr14	60644698	60649488	14q23	14q23.1	601205	SIX1, BOS3, DFNA23	Sine oculis homeo box, Drosophila, homolog of, 1	SIX1	6495	ENSG00000126778		Branchiootic syndrome 3, 608389 (3), Autosomal dominant; Deafness, autosomal dominant 23, 605192 (3), Autosomal dominant	Six1 (MGI:102780)
chr14	60709537	60724320	14q23	14q23.1	606342	SIX4	Sine oculis homeo box, Drosophila, homolog of, 4	SIX4	51804	ENSG00000100625			Six4 (MGI:106034)
chr14	60734734	60969880	14q23	14q23.1	602659	MNAT1, MAT1	Menage a trois 1	MNAT1	4331	ENSG00000020426			Mnat1 (MGI:106207)
chr14	60971440	60981689	14q23.1	14q23.1	611023	TRMT5, TRM5, KIAA1393, COXPD26	tRNA methyltransferase 5, S. cerevisiae, homolog of	TRMT5	57570	ENSG00000126814		Combined oxidative phosphorylation deficiency 26, 616539 (3), Autosomal recessive	Trmt5 (MGI:1923607)
chr14	60981113	61083732	14q23.1	14q23.1	616518	SLC38A6, SNAT6	Solute carrier family 38 (amino acid transporter), member 6	SLC38A6	145389	ENSG00000139974			Slc38a6 (MGI:3648156)
chr14	61187304	61550979	14q22-q23	14q23.1	605437	PRKCH, PKCL, PRKCL	Protein kinase C, eta	PRKCH	5583	ENSG00000027075		{Cerebral infarction, susceptibility to}, 601367 (3), Multifactorial	Prkch (MGI:97600)
chr14	61277369	61281811	14q23.1	14q23.1	611029	TMEM30B, CDC50B	Transmembrane protein 30B	TMEM30B	161291	ENSG00000182107			Tmem30b (MGI:2442082)
chr14	61600000	64300000	14q23.2		609113	TELM	Telomere length, mean leukocyte		550641		suggestive QTL on 12, 10q, 3p	[Telomere length, mean leukocyte], 609113 (2)	
chr14	61681040	61695822	14q23.2	14q23.2	614528	HIF1AAS1	HIF1A antisense RNA 1	HIF1A-AS1	100750246				
chr14	61695400	61748258	14q21-q24	14q23.2	603348	HIF1A, MOP1	Hypoxia-inducible factor 1, alpha subunit	HIF1A	3091	ENSG00000100644			Hif1a (MGI:106918)
chr14	61747038	61749088	14q23.2	14q23.2	614529	HIF1AAS2	HIF1A antisense RNA 2	HIF1A-AS2	100750247				
chr14	61762356	61796427	14q23.2	14q23.2	600591	SNAPC1, SNAP43	Small nuclear RNA-activating protein complex, polypeptide 1	SNAPC1	6617	ENSG00000023608			Snapc1 (MGI:1922877)
chr14	61812155	62112824	14q23.1	14q23.2	610950	SYT16, STREP14	Synaptotagmin 16	SYT16	83851	ENSG00000139973			Syt16 (MGI:2673872)
chr14	62706572	63045237	14q23.2	14q23.2	605716	KCNH5	Potassium voltage-gated channel, subfamily H, member 5	KCNH5	27133	ENSG00000140015			Kcnh5 (MGI:3584508)
chr14	63204383	63293511	14q23.2	14q23.2	607653	RHOJ, ARHJ, TCL	Ras homolog gene family, member J	RHOJ	57381	ENSG00000126785			Rhoj (MGI:1931551)
chr14	63312834	63318878	14q23.2	14q23.2	609652	GPHB5, GPB5	Glycoprotein hormone, beta-5	GPHB5	122876	ENSG00000179600			Gphb5 (MGI:2156540)
chr14	63371355	63543394	14q23.1	14q23.2	601647	PPP2R5E	Protein phosphatase-2, regulatory subunit B (B56), epsilon isoform	PPP2R5E	5529	ENSG00000154001	incorrectly assigned to 7p12-p11.2 by FISH		Ppp2r5e (MGI:1349473)
chr14	63684215	63728107	14q22.1	14q23.2	612826	SGPP1, SPPASE1	Sphingosine-1-phosphate phosphatase 1	SGPP1	81537	ENSG00000126821			Sgpp1 (MGI:2135760)
chr14	63761903	64226448	14q23	14q23.2	608442	SYNE2, NUANCE, KIAA1011, EDMD5	Spectrin repeat-containing nuclear envelope protein 2 (nesprin 2)	SYNE2	23224	ENSG00000054654		Emery-Dreifuss muscular dystrophy 5, autosomal dominant, 612999 (3), Autosomal dominant	Syne2 (MGI:2449316)
chr14	64226711	64338630	14q	14q23.2-q23.3	601663	ESR2	Estrogen receptor-2 (ER beta)	ESR2	2100	ENSG00000140009			Esr2 (MGI:109392)
chr14	64388040	64460006	14q24	14q23.3	172460	MTHFD1, MTHFC, CIMAH	Methylenetetrahydrofolate dehydrogenase 1	MTHFD1	4522	ENSG00000100714	trifunctional protein	Combined immunodeficiency and megaloblastic anemia with or without hyperhomocysteinemia, 617780 (3), Autosomal recessive; {Neural tube defects, folate-sensitive, susceptibility to}, 601634 (3), Autosomal recessive	Mthfd1 (MGI:1342005)
chr14	64449105	64505212	14q23-q24	14q23.3	194541	ZBTB25, ZNF46, KUP	Zinc finger and BTB domain containing 25	ZBTB25	7597	ENSG00000089775			Zbtb25 (MGI:99197)
chr14	64465498	64474502	14q23.3	14q23.3	604688	AKAP5, AKAP79	A-kinase anchor protein 5	AKAP5	9495	ENSG00000179841			Akap5 (MGI:2685104)
chr14	64504573	64533689	14q23.3	14q23.3	616578	ZBTB1	Zinc finger- and BTB domain-containing protein 1	ZBTB1	22890	ENSG00000126804			Zbtb1 (MGI:2442326)
chr14	64540467	64543236	14q24.1	14q23.3	140560	HSPA2	Heat-shock 70kD protein-2	HSPA2	3306	ENSG00000126803			Hspa2 (MGI:96243)
chr14	64744105	64879888	14q23.3	14q23.3	182870	SPTB, SPH2, EL3, HS2	Spectrin, beta, erythrocytic	SPTB	6710	ENSG00000070182		Anemia, neonatal hemolytic, fatal and near-fatal (3); Elliptocytosis-3 (3); Spherocytosis, type 2, 616649 (3), Autosomal dominant	Sptb (MGI:98387)
chr14	64914360	64935367	14q23.3	14q23.3	608577	CHURC1, CHCH, C14orf52	Churchill domain-containing 1	CHURC1	91612	ENSG00000258289			Churc1 (MGI:1923684)
chr14	64939151	64942904	14q24.1	14q23.3	138319	GPX2	Glutathione peroxidase-2, gastrointestinal	GPX2	2877	ENSG00000176153			Gpx2 (MGI:106609)
chr14	64986788	65062651	14q23-q24	14q23.3	134636	FNTB	Farnesyltransferase, CAAX box, beta	FNTB	2342	ENSG00000257365	related FNTBL1 on 9		Fntb (MGI:1861305)
chr14	65006100	65102694	14q23	14q23.3	154950	MAX	MAX protein	MAX	4149	ENSG00000125952	interacts with MYC	{Pheochromocytoma, susceptibility to}, 171300 (3), Autosomal dominant	Max (MGI:96921)
chr14	65410591	65744121	14q23	14q23.3	602589	FUT8	Fucosyltransferase 8	FUT8	2530	ENSG00000033170			Fut8 (MGI:1858901)
chr14	66507406	67735830	14q24	14q23.3-q24.1	603930	GPHN, GPH, KIAA1385, GEPH, MOCODC	Gephyrin	GPHN	10243	ENSG00000171723		Molybdenum cofactor deficiency C, 615501 (3), Autosomal recessive	Gphn (MGI:109602)
chr14	67241294	67336060	14q23.3	14q23.3	606958	MPP5, PALS1	Membrane protein, palmitoylated 5	MPP5	64398	ENSG00000072415			Mpp5 (MGI:1927339)
chr14	67337863	67360002	14q24	14q23.3	609398	ATP6V1D, ATP6M	ATPase, H+ transporting, lysosomal, 34-kD, V1 subunit D	ATP6V1D	51382	ENSG00000100554			Atp6v1d (MGI:1921084)
chr14	67386978	67412199	14q23.3	14q23.3-q24.1	608007	PLEK2	Pleckstrin 2	PLEK2	26499	ENSG00000100558			Plek2 (MGI:1351466)
chr14	67589305	67600301	14q11-q24	14q24.1	600154	PIGH	Phosphatidylinositol glycan, class H	PIGH	5283	ENSG00000100564			Pigh (MGI:99463)
chr14	67619861	67651719	14q24.1-q24.3	14q24.1	107830	ARG2	Arginase II	ARG2	384	ENSG00000081181			Arg2 (MGI:1330806)
chr14	67651148	67674884	14q24.1	14q24.1	603207	VTI1B, VTI1, VTI1L	Vti1, S. cerevisiae, homolog of, B	VTI1B	10490	ENSG00000100568			Vti1b (MGI:1855688)
chr14	67676799	67695792	14q23.3	14q24.1	607849	RDH11, PSDR1, RALR1, RDJCSS	Retinol dehydrogenase 11	RDH11	51109	ENSG00000072042	mutation identified in 1 RDJCSS family	?Retinal dystrophy, juvenile cataracts, and short stature syndrome, 616108 (3), Autosomal recessive	Rdh11 (MGI:102581)
chr14	67701885	67734450	14q23.3	14q24.1	608830	RDH12, LCA13	Retinol dehydrogenase 12	RDH12	145226	ENSG00000139988	near RDH11	Leber congenital amaurosis 13, 612712 (3), Autosomal recessive	Rdh12 (MGI:1925224)
chr14	67728891	67817292	14q24.1	14q24.1	612012	ZFYVE26, KIAA0321, SPG15	Zinc finger FYVE domain-containing protein 26	ZFYVE26	23503	ENSG00000072121		Spastic paraplegia 15, autosomal recessive, 270700 (3), Autosomal recessive	Zfyve26 (MGI:1924767)
chr14	67819778	68683117	14q23.3-q24	14q24.1	602948	RAD51L1	RAD51. S. cerevisiae, homolog of, like 1	RAD51B	5890	ENSG00000182185	fused with HMGA2 in uterine leiomyoma		Rad51b (MGI:1099436)
chr14	68787654	68796242	14q22-q24	14q24.1	601064	ZFP36L1, BRF1, ERF1	Zinc finger protein 36, C3H type-like 1 (butyrate response factor 1; EGF-response factor 1)	ZFP36L1	677	ENSG00000185650			Zfp36l1 (MGI:107946)
chr14	68874122	68979365	14q24.1	14q24.1	102575	ACTN1, BDPLT15	Actinin, alpha-1	ACTN1	87	ENSG00000072110		Bleeding disorder, platelet-type, 15, 615193 (3), Autosomal dominant	Actn1 (MGI:2137706)
chr14	69050919	69153392	14q24.1-q24.2	14q24.1	603812	DCAF5, WDR22, BCRP2, D14S1461E	DDB1- and CUL4-associated factor 5	DCAF5	8816	ENSG00000139990			Dcaf5 (MGI:2444785)
chr14	69191476	69244019	14q24.1	14q24.1	616940	EXD2, EXDL2	Exonuclease 3'-to-5' domain-containing protein 2	EXD2	55218	ENSG00000081177			Exd2 (MGI:1922485)
chr14	69259545	69379903	14q24.1	14q24.1	615132	GALNT16, GALNACT16, GALNTL1, KIAA1130	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 16	GALNT16	57452	ENSG00000100626			Galnt16 (MGI:1917754)
chr14	69380122	69398303	14q24.1	14q24.1	601191	ERH	Enhancer of rudimentary, Drosophila, homolog of	ERH	2079	ENSG00000100632	possible pseudogene on 7q34		Erh (MGI:108089)
chr14	69611592	69715143	14q24.1	14q24.1	616761	SUSD6, DRAGO, KIAA0247	SUSHI domain-containing protein 6	SUSD6	9766	ENSG00000100647			Susd6 (MGI:2444661)
chr14	69767086	69772004	14q24.2	14q24.1	600914	SRSF5, SFRS5, SRp40	Splicing factor, serine/arginine-rich, 5	SRSF5	6430	ENSG00000100650			
chr14	69775834	69797288	14q24.1	14q24.1	182396	SLC10A1, NTCP1	Solute carrier family 10 (sodium/bile acid cotransporter family), member 1	SLC10A1	6554	ENSG00000100652			Slc10a1 (MGI:97379)
chr14	69879387	70032365	14q24.1	14q24.2	608488	SMOC1, OAS	SPARC-related modular calcium-binding 1	SMOC1	64093	ENSG00000198732		Microphthalmia with limb anomalies, 206920 (3), Autosomal recessive	Smoc1 (MGI:1929878)
chr14	70366495	70417089	14q24.2	14q24.2	609411	SYNJ2BP, OMP25, ARIP2	Synaptojanin 2-binding protein	SYNJ2BP	55333	ENSG00000213463			Synj2bp (MGI:1344347)
chr14	70452156	70459904	14q24.1	14q24.2	603713	ADAM21	A disintegrin and metalloproteinase domain 21	ADAM21	8747	ENSG00000139985			Adam21 (MGI:1861229)
chr14	70520816	70564741	14q24.1	14q24.2	603712	ADAM20	A disintegrin and metalloproteinase domain 20	ADAM20	8748	ENSG00000134007			Adam20,Adam25,Adam39 (MGI:3045694,MGI:1345157,MGI:2152342)
chr14	70641786	70675359	14q24.2	14q24.2	610488	TTC9, KIAA0227	Tetratricopeptide repeat domain-containing protein 9	TTC9	23508	ENSG00000133985			Ttc9 (MGI:1916730)
chr14	70722525	70809261	14q24.3-q31	14q24.2	600136	MAP3K9, MLK1	Mitogen-activated protein kinase kinase kinase 9	MAP3K9	4293	ENSG00000006432			Map3k9 (MGI:2449952)
chr14	70907404	71115381	14q24.2	14q24.2	617655	PCNX1, KIAA0995	Pecanex, Drosophila, homolog of, 1	PCNX1	22990	ENSG00000100731			Pcnx (MGI:1891924)
chr14	71320417	71741228	14q24.2	14q24.2	617504	SIPA1L1, E6TP1, KIAA0440	SIPA1-like protein 1	SIPA1L1	26037	ENSG00000197555			Sipa1l1 (MGI:2443679)
chr14	71867396	72632477	14q24.3	14q24.2	603894	RGS6	Regulator of G protein signaling 6	RGS6	9628	ENSG00000182732			Rgs6 (MGI:1354730)
chr14	72609031	72894115	14q24.3-q31.1	14q24.2	601672	DPF3, CERD4	D4, zinc and double PHD fingers, family 3	DPF3	8110	ENSG00000205683			Dpf3 (MGI:1917377)
chr14	72926331	72962097	14q24.2	14q24.2	616372	DCAF4, WDR21, WDR21A	DDB1- and CUL4-associated factor 4	DCAF4	26094	ENSG00000119599			Dcaf4 (MGI:1921078)
chr14	72969444	73027211	14q22-q24	14q24.2	605471	ZFYVE1, ZNFN2A1, DFCP1, TAFF1	Zinc finger FYVE type-containing protein 1	ZFYVE1	53349	ENSG00000165861			Zfyve1 (MGI:3026685)
chr14	73058512	73121413	14q24.2	14q24.2	612427	RBM25, RED120	RNA-binding motif protein 25	RBM25	58517	ENSG00000119707			
chr14	73136434	73223690	14q24.3	14q24.2	104311	PSEN1, AD3, ACNINV3	Presenilin 1	PSEN1	5663	ENSG00000080815	mutation identified in 1 ACNINV3 family	?Acne inversa, familial, 3, 613737 (3), Autosomal dominant; Alzheimer disease, type 3, 607822 (3), Autosomal dominant; Alzheimer disease, type 3, with spastic paraparesis and apraxia, 607822 (3), Autosomal dominant; Alzheimer disease, type 3, with spastic paraparesis and unusual plaques, 607822 (3), Autosomal dominant; Cardiomyopathy, dilated, 1U, 613694 (3), Autosomal dominant; Dementia, frontotemporal, 600274 (3), Autosomal dominant; Pick disease, 172700 (3), Autosomal dominant, Isolated cases	Psen1 (MGI:1202717)
chr14	73235840	73274639	14q24.2	14q24.2	617785	PAPLN, PPN	Papilin, proteoglycan-like sulfated glycoprotein	PAPLN	89932	ENSG00000100767			Papln (MGI:2386139)
chr14	73275209	73458579	14q24.3	14q24.2-q24.3	603728	NUMB, S171	Numb, Drosophila, homolog of	NUMB	8650	ENSG00000133961			Numb (MGI:107423)
chr14	73300000	78800000	14q24.3		613085	GLC3C	Glaucoma 3, primary congenital, C	GLC3C	399565		between D14S61 and D14S1000	Glaucoma 3, primary congenital, C, 613085 (2)	
chr14	73300000	89300000	14q24.3-q31		601208	IDDM11	Insulin-dependent diabetes mellitus-11	IDDM11	3410			{Diabetes mellitus, insulin-dependent, 11}, 601208 (2)	
chr14	73300000	78800000	14q24.3		614628	KTCN8	Keratoconus 8		100885803		between rs1074501 and rs755212	Keratoconus 8, 614628 (2), Autosomal dominant	
chr14	73300000	78800000	14q24.3		612083	MUSTQTL1	Muscle strength quantitative trait locus 1		100192311			Muscle strength quantitative trait locus 1, 612083 (2)	
chr14	73490933	73493400	14q24.3	14q24.3	611919	RIOX1, C14orf169, NO66, MAPJD	Ribosomal oxygenase 1	RIOX1	79697	ENSG00000170468			Riox1 (MGI:1919202)
chr14	73493020	73543798	14q24.3	14q24.3	614313	ACOT1	Acyl-CoA thioesterase 1	ACOT1	641371	ENSG00000184227			Acot3 (MGI:2159619)
chr14	73567619	73575657	14q24.3	14q24.3	609972	ACOT2, PTE2, MTE1	Acyl-CoA thioesterase 2	ACOT2	10965	ENSG00000119673			Acot2 (MGI:2159605)
chr14	73591705	73595765	14q24.3	14q24.3	614314	ACOT4	Acyl-CoA thioesterase 4	ACOT4	122970	ENSG00000177465	?pseudogene on 19q13.12		Acot4 (MGI:2159621)
chr14	73612275	73619928	14q24.3	14q24.3	614267	ACOT6	Acyl-CoA thioesterase 6	ACOT6	641372	ENSG00000205669			
chr14	73644874	73703727	14q24.3	14q24.3	610062	DNAL1, C14orf168, CILD16	Dynein, axonemal, light chain 1	DNAL1	83544	ENSG00000119661		Ciliary dyskinesia, primary, 16, 614017 (3), Autosomal recessive	Dnal1 (MGI:1921462)
chr14	73711782	73714424	14q24.3	14q24.3	604010	PNMA1, MA1	Paraneoplastic MA antigen 1	PNMA1	9240	ENSG00000176903			Pnma1 (MGI:2180564)
chr14	73851830	73885464	14q24	14q24.3	608642	ZADH1	Zinc-binding alcohol dehydrogenase domain-containing protein 1	PTGR2	145482	ENSG00000140043			Ptgr2 (MGI:1916372)
chr14	73949933	73963459	14q24.3	14q24.3	614647	COQ6, CGI10, COQ10D6	Coq6, S. cerevisiae, homolog of	COQ6	51004	ENSG00000119723		Coenzyme Q10 deficiency, primary, 6, 614650 (3), Autosomal recessive	Coq6 (MGI:1924408)
chr14	73957915	74019331	14q24	14q24.3	603162	ENTPD5, CD39L4	Ectonucleoside triphosphate diphosphohydrolase 5	ENTPD5	957	ENSG00000187097			Entpd5 (MGI:1321385)
chr14	74057661	74084492	14q24.3	14q24.3	603178	ALDH6A1, MMSDH	Aldehyde dehydrogenase 6 family, member A1 (methylmalonate semialdehyde dehydrogenase)	ALDH6A1	4329	ENSG00000119711		Methylmalonate semialdehyde dehydrogenase deficiency, 614105 (3), Autosomal recessive	Aldh6a1 (MGI:1915077)
chr14	74239471	74262737	14q24.3	14q24.3	142993	CHX10, HOX10, MCOP2, MCOPCB3	C. elegans ceh-10 homeo domain-containing homolog	VSX2	338917	ENSG00000119614		Microphthalmia with coloboma 3, 610092 (3); Microphthalmia, isolated 2, 610093 (3)	Vsx2 (MGI:88401)
chr14	74285276	74303063	14q24.3	14q24.3	603214	ABCD4, PXMP1L, P79R, PMP69, MAHCJ	ATP-binding cassette, subfamily D, member 4 (peroxisomal membrane protein 1-like)	ABCD4	5826	ENSG00000119688		Methylmalonic aciduria and homocystinuria, cblJ type, 614857 (3), Autosomal recessive	Abcd4 (MGI:1349217)
chr14	74405892	74477079	14q24.3	14q24.3	609999	SYNDIG1L, TMEM90A, CAPUCIN	Synapse differentiation-induced gene 1-like	SYNDIG1L	646658	ENSG00000183379			Syndig1l (MGI:2685107)
chr14	74479939	74493380	14q24.3	14q24.3	601015	NPC2, HE1	Epididymal secretory protein HE1	NPC2	10577	ENSG00000119655		Niemann-pick disease, type C2, 607625 (3), Autosomal recessive	Npc2 (MGI:1915213)
chr14	74493719	74495567	14q24.3	14q24.3	615317	ISCA2, MMDS4	Iron-sulfur cluster assembly 2, S. cerevisiae, homolog of	ISCA2	122961	ENSG00000165898		Multiple mitochondrial dysfunctions syndrome 4, 616370 (3), Autosomal recessive	Isca2 (MGI:1921566)
chr14	74498182	74612592	14q24	14q24.3	602091	LTBP2, LTBP3, GLC3D, MSPKA, WMS3	Latent transforming growth factor beta binding protein-2	LTBP2	4053	ENSG00000119681	mutation identified in 1 WMS3 family	Glaucoma 3, primary congenital, D, 613086 (3); Microspherophakia and/or megalocornea, with ectopia lentis and with or without secondary glaucoma, 251750 (3), Autosomal recessive; ?Weill-Marchesani syndrome 3, recessive, 614819 (3), Autosomal recessive	Ltbp2 (MGI:99502)
chr14	74661251	74713117	14q24.3	14q24.3	615380	AREL1, KIAA0317	Apoptosis-resistant E3 ubiquitin protein ligase 1	AREL1	9870	ENSG00000119682			Arel1 (MGI:1915747)
chr14	74853032	74876662	14q24.3	14q24.3	615094	PROX2	Prospero-related homeobox 2	PROX2	283571	ENSG00000119608			Prox2 (MGI:1920672)
chr14	74881890	74903746	14q24.3	14q24.3	126063	DLST	Dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)	DLST	1743	ENSG00000119689			Dlst (MGI:1926170)
chr14	74941829	74955763	14q24-q31	14q24.3	601121	PGF, PLGF	Placental growth factor, vascular endothelial growth factor-related protein	PGF	5228	ENSG00000119630			Pgf (MGI:105095)
chr14	75002908	75009590	14q24	14q24.3	606454	EIF2B2	Eukaryotic translation initiation factor 2B, subunit 2	EIF2B2	8892	ENSG00000119718		Leukoencephalopathy with vanishing white matter, 603896 (3), Autosomal recessive; Ovarioleukodystrophy, 603896 (3), Autosomal recessive	Eif2b2 (MGI:2145118)
chr14	75013763	75051531	14q24.3	14q24.3	604395	MLH3, HNPCC7	Mismatch repair gene MLH3	MLH3	27030	ENSG00000119684		Colorectal cancer, hereditary nonpolyposis, type 7, 614385 (3); Colorectal cancer, somatic, 114500 (3); {Endometrial cancer, susceptibility to}, 608089 (3)	Mlh3 (MGI:1353455)
chr14	75053220	75069482	14q24.3	14q24.3	600875	ACYP1, ACYPE	Acylphosphatase, erythrocyte	ACYP1	97	ENSG00000119640			Acyp1 (MGI:1913454)
chr14	75081378	75127636	14q24.3	14q24.3	609798	NEK9, NERCC1, LCCS10, APUG, NC	Never in mitosis gene A-related kinase 9	NEK9	91754	ENSG00000119638	mutation identified in 1 APUG family	?Arthrogryposis, Perthes disease, and upward gaze palsy, 614262 (3), Autosomal recessive; Lethal congenital contracture syndrome 10, 617022 (3), Autosomal recessive; Nevus comedonicus, somatic, 617025 (3)	Nek9 (MGI:2387995)
chr14	75131467	75176645	14q24.3	14q24.3	605406	TMED10, TMP21	Transmembrane p24 trafficking protein 10	TMED10	10972	ENSG00000170348			Tmed10,Tmed10-ps (MGI:3782198,MGI:1915831)
chr14	75278777	75282233	14q24.3	14q24.3	164810	FOS	FBJ murine osteosarcoma viral (v-fos) oncogene homolog (oncogene FOS)	FOS	2353	ENSG00000170345			Fos (MGI:95574)
chr14	75426691	75472700	14q24.3	14q24.3	608657	JDP2	JUN dimerization protein 2	JDP2	122953	ENSG00000140044			Jdp2 (MGI:1932093)
chr14	75522440	75546991	14q24	14q24.3	612476	BATF, BATF1, SFA2	Basic leucine zipper transcription factor, ATF-like	BATF	10538	ENSG00000156127			Batf (MGI:1859147)
chr14	75578596	75648168	14q24.3	14q24.3	610865	FLVCR2, C14orf58, CCT, PVHH, EPV	Feline leukemia virus subgroup C receptor 2	FLVCR2	55640	ENSG00000119686		Proliferative vasculopathy and hydranencephaly-hydrocephaly syndrome, 225790 (3), Autosomal recessive	Flvcr2 (MGI:2384974)
chr14	75650889	75661194	14q24	14q24.3	604576	ERG28, C14orf1	Ergosterol biosynthesis 28 homolog	ERG28	11161	ENSG00000133935			Erg28 (MGI:1915571)
chr14	75661207	75955081	14q24.3	14q24.3	612268	TTLL5, STAMP, KIAA0998, CORD19	Tubulin tyrosine ligase-like family, member 5	TTLL5	23093	ENSG00000119685		Cone-rod dystrophy 19, 615860 (3), Autosomal recessive	Ttll5 (MGI:2443657)
chr14	75958060	75983010	14q24	14q24.3	190230	TGFB3, ARVD1, RNHF, LDS5	Transforming growth factor, beta-3	TGFB3	7043	ENSG00000119699		Arrhythmogenic right ventricular dysplasia 1, 107970 (3), Autosomal dominant; Loeys-Dietz syndrome 5, 615582 (3), Autosomal dominant	Tgfb3 (MGI:98727)
chr14	75985752	76084072	14q24.3	14q24.3	614068	IFT43, C14orf179, CED3, SRTD18, RP81	Intraflagellar transport 43, Chlamydomonas, homolog of	IFT43	112752	ENSG00000119650	mutation identified in 1 CED3 family and 1 RP81 family	?Cranioectodermal dysplasia 3, 614099 (3), Autosomal recessive; ?Retinitis pigmentosa 81, 617871 (3), Autosomal recessive; Short-rib thoracic dysplasia 18 with polydactyly, 617866 (3), Autosomal recessive	Ift43 (MGI:1923661)
chr14	76371346	76501838	14q24.3	14q24.3	602167	ESRRB, ESRL2, DFNB35	Estrogen-related receptor beta	ESRRB	2103	ENSG00000119715		Deafness, autosomal recessive 35, 608565 (3), Autosomal recessive	Esrrb (MGI:1346832)
chr14	77024542	77028698	14q24.3	14q24.3	611720	IRF2BPL, C14orf4, EAP1	Interferon regulatory factor 2-binding protein like	IRF2BPL	64207	ENSG00000119669			Irf2bpl (MGI:2442463)
chr14	77098234	77117286	14q24.3	14q24.3	616995	CIPC, KIAA1737	Clock-interacting pacemaker	CIPC	85457	ENSG00000198894			Cipc (MGI:1919185)
chr14	77265490	77271311	14q24	14q24.3	605304	NGB	Neuroglobin	NGB	58157	ENSG00000165553			Ngb (MGI:2151886)
chr14	77274955	77320884	14q24.3	14q24.3	607439	POMT2, MDDGA2, MDDGB2, MDDGC2	Putative protein O-mannosyltransferase 2	POMT2	29954	ENSG00000009830		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 2, 613150 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 2, 613156 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 2, 613158 (3), Autosomal recessive	Pomt2 (MGI:2444430)
chr14	77320886	77331596	14q24.3	14q24.3	603758	GSTZ1, MAAI, MAAID	Glutathione S-transferase, zeta-1 (maleylacetoacetate isomerase)	GSTZ1	2954	ENSG00000100577		[Maleylacetoacetate isomerase deficiency], 617596 (3), Autosomal recessive	Gstz1 (MGI:1341859)
chr14	77426674	77457726	14q24.3	14q24.3	613401	VIPAS39, VIPAR, SPE39, C14orf133	VPS33B-interacting protein, apical-basolateral polarity regulator, spe-39 homolog	VIPAS39	63894	ENSG00000151445		Arthrogryposis, renal dysfunction, and cholestasis 2, 613404 (3), Autosomal recessive	Vipas39 (MGI:2144805)
chr14	77457876	77469471	14q24.3	14q24.3	608466	AHSA1, AHA1	Activator of heat-shock 90kD protein ATPase 1	AHSA1	10598	ENSG00000100591			Ahsa1 (MGI:2387603)
chr14	77474393	77498866	14q24.3	14q24.3	612684	ISM2, THSD3, TAIL1	Isthmin 2, zebrafish, homolog of	ISM2	145501	ENSG00000100593			
chr14	77505996	77616766	14q24.3-q31	14q24.3	605713	SPTLC2, KIAA0526, SPT2, LCB2, HSN1C, NSAN1C	Serine palmitoyltransferase, long-chain base subunit 2	SPTLC2	9517	ENSG00000100596		Neuropathy, hereditary sensory and autonomic, type IC, 613640 (3), Autosomal dominant	Sptlc2 (MGI:108074)
chr14	77672403	77708037	14q24	14q24.3	605345	ALKBH1, ALKB	AlkB, E. coli, homolog of, 1	ALKBH1	8846	ENSG00000100601			Alkbh1 (MGI:2384034)
chr14	77708070	77717597	14q24.3	14q24.3	610211	SLIRP, C14orf156	SRA stem loop-interacting RNA-binding protein	SLIRP	81892	ENSG00000119705			Slirp (MGI:1916394)
chr14	77717598	77761155	14q24.3	14q24.3	603055	SKIIP, SKIP, SNW1, BX42	SKI-interacting protein	SNW1	22938	ENSG00000100603			Snw1 (MGI:1913604)
chr14	77979903	79868289	14q24.3-q31.1	14q24.3-q31.1	600567	NRXN3	Neurexin 3	NRXN3	9369	ENSG00000021645			
chr14	78800000	89300000	14q31		275000	GRD1	Graves disease, susceptibility to, 1		100312954		associated with rs2268458	{Graves disease, susceptibility to, 1}, 275000 (2), Autosomal recessive	
chr14	78800000	89300000	14q31		614187	HPPD	Hypertelorism, preauricular sinus, punctal pits, and deafness		100682260			Hypertelorism, preauricular sinus, punctal pits, and deafness, 614187 (2), Autosomal dominant	
chr14	80197524	80231053	14q24.3	14q31.1	601413	DIO2, TXDI2, D2	Deiodinase, iodothyronine, type II	DIO2	1734	ENSG00000211448			Dio2 (MGI:1338833)
chr14	80954988	81146301	14q31	14q31.1	603372	TSHR, CHNG1	Thyroid-stimulating hormone receptor	TSHR	7253	ENSG00000165409		Hyperthyroidism, familial gestational, 603373 (3); Hyperthyroidism, nonautoimmune, 609152 (3), Autosomal dominant, Isolated cases; Hypothyroidism, congenital, nongoitrous, 1, 275200 (3), Autosomal recessive; Thyroid adenoma, hyperfunctioning, somatic (3); Thyroid carcinoma with thyrotoxicosis (3)	Tshr (MGI:98849)
chr14	81175451	81221230	14q31.1	14q31.1	600520	GTF2A1, TF2A1	General transcription factor IIA, alpha/beta subunits	GTF2A1	2957	ENSG00000165417			Gtf2a1 (MGI:1933277)
chr14	81260649	81436463	14q13.1	14q31.1	608467	STON2, STN2, STNB	Stonin 2	STON2	85439	ENSG00000140022			Ston2 (MGI:1918272)
chr14	81471546	81533860	14q31	14q31.1	602329	SEL1L	Suppressor of lin 12 (sel-1), C. elegans, homolog of	SEL1L	6400	ENSG00000071537			Sel1l (MGI:1329016)
chr14	85527371	85628695	14q24-q32	14q31.3	604807	FLRT2	Fibronectin-like domain-containing leucine-rich transmembrane protein-2	FLRT2	23768	ENSG00000185070			Flrt2 (MGI:3603594)
chr14	87933013	87993664	14q31	14q31.3	606890	GALC	Galactosylceramidase	GALC	2581	ENSG00000054983		Krabbe disease, 245200 (3), Autosomal recessive	Galc (MGI:95636)
chr14	88005123	88014810	14q31-q32.1	14q31.3	604620	GPR65, TDAG8	G protein-coupled receptor 65	GPR65	8477	ENSG00000140030			Gpr65 (MGI:108031)
chr14	88180107	88326911	14q31	14q31.3	605873	KCNK10, TREK2	Potassium channel, subfamily K, member 10	KCNK10	54207	ENSG00000100433			Kcnk10 (MGI:1919508)
chr14	88385637	88470349	14q31.3	14q31.3	609868	SPATA7, HSD3, LCA3	Spermatogenesis-associated protein 7	SPATA7	55812	ENSG00000042317		Leber congenital amaurosis 3, 604232 (3); Retinitis pigmentosa, juvenile, autosomal recessive, 604232 (3)	Spata7 (MGI:2144877)
chr14	88465777	88554778	14q31.3	14q31.3	603271	PTPN21, PTPD1	Protein-tyrosine phosphatase, nonreceptor-type, 21	PTPN21	11099	ENSG00000070778			Ptpn21 (MGI:1344406)
chr14	88562908	88613508	14q31.3	14q31.3	613279	ZC3H14, SUT2, MRT56	Zinc finger CCCH domain-containing protein 14	ZC3H14	79882	ENSG00000100722		Mental retardation, autosomal recessive 56, 617125 (3), Autosomal recessive	Zc3h14 (MGI:1919824)
chr14	88824152	88877995	14q32.1	14q31.3	608132	TTC8, BBS8, RP51	Tetratricopeptide repeat domain 8	TTC8	123016	ENSG00000165533	mutation identified in 1 RP51 family	Bardet-Biedl syndrome 8, 615985 (3), Autosomal recessive; ?Retinitis pigmentosa 51, 613464 (3), Autosomal recessive	Ttc8 (MGI:1923510)
chr14	89156171	89619149	14q24.3-q31	14q31.3-q32.1	602628	FOXN3, CHES1	Forkhead box N3	FOXN3	1112	ENSG00000053254			
chr14	89300000	107043718	14q32		608318	CHDS4	Coronary heart disease, susceptibility to, 4		387585		highest LOD with D14S1426	{Coronary heart disease, susceptibility to, 4}, 608318 (2)	
chr14	89300000	107043718	14q32		123270	CKBE	Creatine kinase, ectopic expression	CKBE	1156		linked to IGH, PI; ?same locus as CKBB	[Creatine kinase, brain type, ectopic expression of], 123270 (2)	
chr14	89300000	107043718	14q32		616604	DUP14q32, C14DUPq32	Chromosome 14q32 duplication syndrome, 700kB				heterozygous germline duplication of 700kb	{Myeloproliferative neoplasms, familial, susceptibility to}, 616604 (4), Autosomal dominant	
chr14	89300000	107043718	14q32		608875	GEVQ1	Gene expression, variation in, quantitative trait locus on chromosome 14		474334			{Gene expression, variation in, QTL}, 608875 (2)	
chr14	89300000	107043718	14q32		164210	HFM	Hemifacial microsomia		170474			Hemifacial microsomia, 164210 (2), Autosomal dominant	
chr14	89300000	107043718	14q32		608149	KAOGS	Kagami-Ogata syndrome				uniparental isodisomy of imprinted region of chromosome 14	Kagami-Ogata syndrome, 608149 (4), Isolated cases	
chr14	89300000	107043718	14q32		251600	MCOP1	Microphthalmia, isolated 1		8113			Microphthalmia, isolated 1, 251600 (2), Autosomal recessive	
chr14	89300000	95800000	14q32.1		107410	SERPINA2P, PIL, ATR, ARGS	Serpin peptidase inhibitor, clade A, member 2, pseudogene	SERPINA2	390502	ENSG00000258597	?pseudogene		
chr14	89300000	107043718	14q32		616222	TEMPS	Temple syndrome (maternal uniparental disomy chromosome 14)					Temple syndrome, 616222 (4), Isolated cases	
chr14	89954922	90044767	14q31-q32	14q32.11	607198	TDP1	Tyrosyl-DNA phosphodiesterase 1	TDP1	55775	ENSG00000042088		Spinocerebellar ataxia, autosomal recessive with axonal neuropathy, 607250 (3)	Tdp1 (MGI:1920036)
chr14	90061764	90185856	14q24.1-q24.3	14q32.11	607367	KCNK13, THIK1	Potassium channel, subfamily K, member 13	KCNK13	56659	ENSG00000152315			Kcnk13 (MGI:2384976)
chr14	90256549	90272624	14q32.11	14q32.11	602706	PSMC1, S4	Proteasome 26S subunit, ATPase, 1	PSMC1	5700	ENSG00000100764	previously assigned to 19p13.3 by FISH		Psmc1 (MGI:106054)
chr14	90396982	90408274	14q24-q31	14q32.11	114180	CALM1, PHKD, CPVT4, LQT14	Calmodulin-1 (phosphorylase kinase, delta)	CALM1	801	ENSG00000198668		Long QT syndrome 14, 616247 (3), Autosomal dominant; Ventricular tachycardia, catecholaminergic polymorphic, 4, 614916 (3), Autosomal dominant	
chr14	90868121	91060648	14q31-q32	14q32.11	603607	RPS6KA5, MSK1	Ribosomal protein S6 kinase, 90kD, 5	RPS6KA5	9252	ENSG00000100784			Rps6ka5 (MGI:1920336)
chr14	91232531	91264580	14q31	14q32.11	601404	GPR68, OGR1, AI2A6	G protein-coupled receptor 68	GPR68	8111	ENSG00000119714		Amelogenesis imperfecta, hypomaturation type, IIA6, 617217 (3), Autosomal recessive	Gpr68 (MGI:2441763)
chr14	91271322	91417843	14q32.11	14q32.11-q32.12	611204	CCDC88C, HKRP2, DAPLE, KIAA1509, HYC, SCA40	Coiled-coil domain-containing protein 88C	CCDC88C	440193	ENSG00000015133	mutation identified in 1 SCA40 family	Hydrocephalus, nonsyndromic, autosomal recessive, 236600 (3), Autosomal recessive; ?Spinocerebellar ataxia 40, 616053 (3), Autosomal dominant	Ccdc88c (MGI:1915589)
chr14	91457480	91510553	14q32.12	14q32.12	610351	PPP4R3A, SMEK1, PP4R3A, KIAA2010	Protein phosphatase 4, regulatory subunit 3, alpha	PPP4R3A	55671	ENSG00000100796			Ppp4r3a (MGI:1915984)
chr14	91580773	91732085	14q32.12	14q32.12	611169	CATSPERB, C14orf161	Cation channel, sperm-associated, beta	CATSPERB	79820	ENSG00000133962			Catsperb (MGI:2443988)
chr14	91869410	91947701	14q32.1	14q32.12	604580	FBLN5, ARMD3, ADCL2, ARCL1A, HNARMD	Fibulin 5	FBLN5	10516	ENSG00000140092		Cutis laxa, autosomal dominant 2, 614434 (3); Cutis laxa, autosomal recessive, type IA, 219100 (3), Autosomal recessive; Macular degeneration, age-related, 3, 608895 (3), Autosomal dominant; Neuropathy, hereditary, with or without age-related macular degeneration, 608895 (3), Autosomal dominant	Fbln5 (MGI:1346091)
chr14	91965990	92040133	14q31-q32	14q32.12	604505	TRIP11, TRIP230, CEV14, ACG1A	Thyroid hormone receptor interactor 11	TRIP11	9321	ENSG00000100815		Achondrogenesis, type IA, 200600 (3), Autosomal recessive	Trip11 (MGI:1924393)
chr14	92058551	92106620	14q32.12	14q32.12	607047	ATXN3, MJD, SCA3	Ataxin-3 (josephin)	ATXN3	4287	ENSG00000066427		Machado-Joseph disease, 109150 (3), Autosomal dominant	Atxn3 (MGI:1099442)
chr14	92116122	92121808	14q32.12	14q32.12	603837	NDUFB1	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 1	NDUFB1	4707	ENSG00000183648			Ndufb1-ps (MGI:3780865)
chr14	92322580	92501480	14q32	14q32.12	609840	SLC24A4, NCKX4, SHEP6, AI2A5	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 4	SLC24A4	123041	ENSG00000140090		Amelogenesis imperfecta, type IIA5, 615887 (3), Autosomal recessive; [Skin/hair/eye pigmentation 6, blond/brown hair], 210750 (3), Autosomal recessive; [Skin/hair/eye pigmentation 6, blue/green eyes], 210750 (3), Autosomal recessive	Slc24a4 (MGI:2447362)
chr14	92703806	92748701	14q32.1	14q32.12	602620	LGMN, PRSC1	Legumain (protease, cysteine, 1)	LGMN	5641	ENSG00000100600			Lgmn (MGI:1330838)
chr14	92794230	92839962	14q	14q32.12	606918	GOLGA5, RFG5	Golgi autoantigen, golgin subfamily A, 5	GOLGA5	9950	ENSG00000066455	fused with RET to form PTC5		Golga5 (MGI:1351475)
chr14	92922593	92935292	14q32	14q32.12	118910	CHGA	Chromogranin A, parathyroid secretory protein-1	CHGA	1113	ENSG00000100604			Chga (MGI:88394)
chr14	92936913	93115918	14q32.12	14q32.12	601838	ITPK1, ITRPK1	Inositol 1,3,4-trisphosphate 5/6-kinase	ITPK1	3705	ENSG00000100605			Itpk1 (MGI:2446159)
chr14	93182195	93184903	14q32.12	14q32.12	609485	MOAP1, MAP1, PNMA4	Modulator of apoptosis 1	MOAP1	64112	ENSG00000165943			Moap1 (MGI:1915555)
chr14	93202891	93207113	14q32.12	14q32.12	617436	GON7, C14orf142	Gon7, S. cerevisiae, homolog of	GON7	84520	ENSG00000170270			Gon7 (MGI:4845848)
chr14	93207055	93229214	14q32.12	14q32.12	613816	UBR7	Ubiquitin protein ligase E3 component N-recognin 7	UBR7	55148	ENSG00000012963			Ubr7 (MGI:1913872)
chr14	93237549	93333091	14q32.1	14q32.12	610386	BTBD7, FUP1	BTB/POX domain-containing protein 7	BTBD7	55727	ENSG00000011114			Btbd7 (MGI:1917858)
chr14	93333218	93710472	14q32.12	14q32.12	616884	UNC79	Unc79, C. elegans, homolog of	UNC79	57578	ENSG00000133958			Unc79 (MGI:2684729)
chr14	93347190	93348353	14q32.12	14q32.12	616855	COX8C	Cytochrome c oxidase, subunit 8c	COX8C	341947	ENSG00000187581			
chr14	93718297	93789028	14q32.12	14q32.12	613851	PRIMA1, PRIMA	Proline-rich membrane anchor 1	PRIMA1	145270	ENSG00000175785			Prima1 (MGI:1926097)
chr14	93934152	93976738	14q32.12	14q32.12	605759	ASB2	Ankyrin repeat-containing SOCS box protein 2	ASB2	51676	ENSG00000100628			Asb2 (MGI:1929743)
chr14	94015599	94048929	14q32.12	14q32.12	608338	OTUB2, OTU2, OTB2, C14orf137	OTU domain-containing ubiquitin aldehyde-binding protein 2	OTUB2	78990	ENSG00000089723			Otub2 (MGI:1915399)
chr14	94050921	94081211	14q32	14q32.12	606181	DDX24	DEAD/H box 24	DDX24	57062	ENSG00000089737			Ddx24 (MGI:1351337)
chr14	94110732	94116698	14q32	14q32.12	600009	IFI27	Interferon, alpha-inducible protein-27	IFI27	3429	ENSG00000165949			
chr14	94127780	94129619	14q32.12	14q32.12	611319	IFI27L2, FAM14A, ISG12B	Interferon alpha inducible protein 27 like 2	IFI27L2	83982	ENSG00000119632			
chr14	94174311	94279734	14q32.13	14q32.12-q32.13	616790	PPP4R4, PP4R4, KIAA1622	Protein phosphatase 4, regulatory subunit 4	PPP4R4	57718	ENSG00000119698			Ppp4r4 (MGI:1921771)
chr14	94280459	94293352	14q32.1	14q32.13	605271	SERPINA10, ZPI	Serine (or cysteine) proteinase inhibitor, clade A, member 10 (protein Z-dependent protease inhibitor precursor)	SERPINA10	51156	ENSG00000140093			Serpina10 (MGI:2667725)
chr14	94304247	94323350	14q32.1	14q32.13	122500	CBG, SERPINA6	Corticosteroid-binding globulin	SERPINA6	866	ENSG00000170099		Corticosteroid-binding globulin deficiency, 611489 (3), Autosomal recessive, Autosomal dominant	Serpina6 (MGI:88278)
chr14	94376746	94390691	14q32.1	14q32.13	107400	SERPINA1, PI, AAT	Alpha-1-antitrypsin (serpin peptidase inhibitor, clade A, member 1)	SERPINA1	5265	ENSG00000197249		Emphysema due to AAT deficiency, 613490 (3), Autosomal recessive; Emphysema-cirrhosis, due to AAT deficiency, 613490 (3), Autosomal recessive; Hemorrhagic diathesis due to antithrombin Pittsburgh, 613490 (3), Autosomal recessive; {Pulmonary disease, chronic obstructive, susceptibility to}, 606963 (1)	Serpina1e,Serpina1c,Serpina1d,Serpina1a,Serpina1b (MGI:891971,MGI:891970,MGI:891968,MGI:891969,MGI:891967)
chr14	94462720	94476332	14q32	14q32.13	615677	SERPINA9, GCET1, CENTERIN	Serpin peptidase inhibitor, clade A, member 9	SERPINA9	327657	ENSG00000170054			Serpina9 (MGI:1919157)
chr14	94481650	94517843	14q32.1	14q32.13	617471	SERPINA12, VASPIN	Serpin peptidase inhibitor, clade A, member 12 (vaspin)	SERPINA12	145264	ENSG00000165953			Serpina12 (MGI:1915304)
chr14	94561419	94569912	14q31-q32.1	14q32.13	147935	SERPINA4, KST, PI4	Serpin peptidase inhibitor, clade A, member 4	SERPINA4	5267	ENSG00000100665	in cluster with related AAT, AACT, CBG, PCI		
chr14	94581368	94593119	14q32.1	14q32.13	601841	SERPNA5, PCI	Serpin peptidase inhibitor, clade A, member 5 (protein C inhibitor)	SERPINA5	5104	ENSG00000188488			Serpina5 (MGI:107817)
chr14	94612376	94624052	14q32.1	14q32.13	107280	SERPINA3, AACT, ACT	Alpha-1-antichymotrypsin	SERPINA3	12	ENSG00000196136	220kb from PI	Alpha-1-antichymotrypsin deficiency (3); Cerebrovascular disease, occlusive (3)	Serpina3m,Serpina3n,Serpina3k,Serpina3c (MGI:98378,MGI:105045,MGI:102848,MGI:98377)
chr14	94768222	94770161	14q32.1	14q32.13	138890	GSC, SAMS	Goosecoid	GSC	145258	ENSG00000133937		Short stature, auditory canal atresia, mandibular hypoplasia, skeletal abnormalities, 602471 (3), Autosomal recessive	Gsc (MGI:95841)
chr14	95086227	95158262	14q31	14q32.13	606241	DICER1, HERNA, KIAA0928, MNG1, RMSE2	Dicer, Drosophila, homolog of, 1	DICER1	23405	ENSG00000100697		Goiter, multinodular 1, with or without Sertoli-Leydig cell tumors, 138800 (3), Autosomal dominant; Pleuropulmonary blastoma, 601200 (3), Autosomal dominant; Rhabdomyosarcoma, embryonal, 2, 180295 (3)	Dicer1 (MGI:2177178)
chr14	95181938	95319907	14q32.13	14q32.13	611121	CLMN, KIAA1188	Calmin	CLMN	79789	ENSG00000165959			Clmn (MGI:2136957)
chr14	95407265	95516692	14q32.13	14q32.13	610861	SYNE3, C14orf49	Spectrin repeat-containing nuclear envelope protein 3 (nesprin 3)	SYNE3	161176	ENSG00000176438			Syne3 (MGI:2442408)
chr14	95534985	95544717	14q32	14q32.13	609588	GLRX5, C14orf87, PRO1238, FLB4739, PRSA, SIDBA3, SPAHGC	Glutaredoxin 5	GLRX5	51218	ENSG00000182512		Anemia, sideroblastic, 3, pyridoxine-refractory, 616860 (3), Autosomal recessive; Spasticity, childhood-onset, with hyperglycinemia, 616859 (3), Autosomal recessive	Glrx5 (MGI:1920296)
chr14	95652096	95673451	14q32.1	14q32.13	604412	TCL6, TNG1, TNG2	T-cell leukemia/lymphoma 6	TCL6	27004				
chr14	95686416	95692642	14q32.1	14q32.13	603769	TCL1B, TML1	T-cell lymphoma/leukemia 1B	TCL1B	9623	ENSG00000213231		Leukemia/lymphoma, T-cell, 603769 (2)	
chr14	95694159	95714195	14q32.1	14q32.13	186960	TCL1A, TCL1	T-cell lymphoma/leukemia 1A	TCL1A	8115	ENSG00000100721		Leukemia/lymphoma, T-cell, 186960 (2)	Tcl1 (MGI:1097166)
chr14	95876391	95925570	14q32	14q32.2	615719	TUNAR, TUNA, LINC00617	TCL1 upstream neural differentiation-associated RNA	TUNAR	100507043				
chr14	96204797	96244328	14q32.1-q32.2	14q32.2	113503	BDKRB2	Bradykinin receptor B2	BDKRB2	624	ENSG00000168398			Bdkrb2 (MGI:102845)
chr14	96256209	96264762	14q32.1-q32.2	14q32.2	600337	BDKRB1	Bradykinin receptor B1	BDKRB1	623	ENSG00000100739			Bdkrb1 (MGI:88144)
chr14	96279201	96363400	14q32.2	14q32.2	616226	ATG2B	Autophagy 2, S. cerevisiae, homolog of, B	ATG2B	55102	ENSG00000066739			Atg2b (MGI:1923809)
chr14	96363451	96387289	14q32.2	14q32.2	616605	GSKIP, C14orf129	GSK3B-interacting protein	GSKIP	51527	ENSG00000100744			Gskip (MGI:1914037)
chr14	96392087	96489426	14q32.2	14q32.2	615364	AK7	Adenylate kinase 7	AK7	122481	ENSG00000140057			Ak7 (MGI:1926051)
chr14	96502375	96567115	14q32.1-q32.2	14q32.2	605553	PAPOLA, PAP	Poly(A) polymerase	PAPOLA	10914	ENSG00000090060			Papola (MGI:109301)
chr14	96797346	96881613	14q32	14q32.2	602168	VRK1, PCH1A	Vaccinia-related kinase-1	VRK1	7443	ENSG00000100749		Pontocerebellar hypoplasia type 1A, 607596 (3), Autosomal recessive	Vrk1 (MGI:1261847)
chr14	99169286	99271712	14q32.1	14q32.2	606558	BCL11B, CTIP2, IMD49	C-cell CLL/lymphoma 11B	BCL11B	64919	ENSG00000127152	mutation identified in 1 IMD49 patient	?Immunodeficiency 49, 617237 (3), Autosomal dominant	Bcl11b (MGI:1929913)
chr14	99397745	99486457	14q32.2	14q32.2	615671	SETD3	SET domain-containing protein 3	SETD3	84193	ENSG00000183576			Setd3 (MGI:1289184)
chr14	99481401	99511514	14q32	14q32.2	603544	CCNK	Cyclin K	CCNK	8812	ENSG00000090061			Ccnk (MGI:1276106)
chr14	99684261	99727320	14q32.1	14q32.2	604087	CYP46A1, CYP46	Cytochrome P450, family 46, subfamily A, polypeptide 1 (cholesterol 24-hydroxylase)	CYP46A1	10858	ENSG00000036530			Cyp46a1 (MGI:1341877)
chr14	99737698	99942059	14q32	14q32.2	602033	EML1, EMAPL, EMAP, BH	Echinoderm microtubule associated protein like 1	EML1	2009	ENSG00000066629		Band heterotopia, 600348 (3), Autosomal recessive	Eml1 (MGI:1915769)
chr14	99971453	100144235	14q32.2	14q32.2	616912	EVL	ENAH/VASP-like protein	EVL	51466	ENSG00000196405			Evl (MGI:1194884)
chr14	100146415	100166885	14q32.2	14q32.2	610862	DEGS2, DES2	Delta(4)-desaturase, sphingolipid, 2	DEGS2	123099	ENSG00000168350			Degs2 (MGI:1917309)
chr14	100238764	100279033	14q	14q32.2	600013	YY1, GADEVS	YY1 transcription factor	YY1	7528	ENSG00000100811		Gabriele-de Vries syndrome, 617557 (3), Autosomal dominant	Yy1 (MGI:99150)
chr14	100277985	100306546	14q32	14q32.2	615064	SLC25A29, CACL, ORNT3	Solute carrier family 25 (carnitine/acylcarnitine translocase), member 29	SLC25A29	123096	ENSG00000197119			Slc25a29 (MGI:2444911)
chr14	100323336	100330420	14q32.31	14q32.2	609911	HDMCP, C14orf68	Hepatocellular carcinoma-downregulated mitochondrial carrier protein	SLC25A47	283600	ENSG00000140107			Slc25a47 (MGI:2144766)
chr14	100333787	100376342	14q32.31	14q32.2	191050	WARS, HMN9	Tryptophanyl-tRNA synthetase	WARS	7453	ENSG00000140105		Neuronopathy, distal hereditary motor, type IX, 617721 (3)	Wars (MGI:104630)
chr14	100726864	100738223	14q32	14q32.2	176290	DLK1, PREF1, FA1	Delta, Drosophila, homolog-like 1	DLK1	8788	ENSG00000185559			Dlk1 (MGI:94900)
chr14	100826107	100861025	14q32.3	14q32.2	605636	MEG3, GTL2	Maternally expressed gene 3	MEG3	55384		100kb from DLK1		
chr14	100880654	100884846	14q32.2	14q32.2	611896	RTL1, PEG11	Retrotransposon-like gene 1	RTL1	388015	ENSG00000254656			Rtl1 (MGI:2656842)
chr14	100881006	100881119	14q32.31	14q32.2	611708	MIR431, MIRN431	Micro RNA 431	MIR431	574038				
chr14	100881885	100881977	14q32.31	14q32.2	611711	MIR433, MIRN433	Micro RNA 433	MIR433	574034				
chr14	100882978	100883074	14q32.31	14q32.2	611709	MIR127, MIRN127	Micro RNA 127	MIR127	406914				
chr14	100884701	100884782	14q32.31	14q32.2	611710	MIR136, MIRN136	Micro RNA 136	MIR136	406927				
chr14	100889648	100999112	14q32	14q32.2-q32.3	613648	MEG8	Maternally expressed gene 8	MEG8	79104				
chr14	100897919	100897995	14q32	14q32.2	613649	SNORD112	Small nucleolar, C/D box, 112	SNORD112	692215		located in an intron of MEG8		
chr14	100911138	100911212	14q32.31	14q32.31	612553	MIR370, MIRN370	Micro RNA 370	MIR370	442915				
chr14	100924820	100924889	14q32	14q32.31	613650	SNORD113-1	Small nucleolar RNA, C/D box, 113-1	SNORD113-1	767561				
chr14	100949832	100949902	14q32	14q32.31	613651	SNORD114-1	Small nucleolar RNA, C/D box, 114-1	SNORD114-1	767577				
chr14	101022065	101022131	14q32.31	14q32.31	616358	MIR379	Micro RNA 379	MIR379	494328				
chr14	101025016	101025076	14q32	14q32.31	613654	MIR380, MIRN380	Micro RNA 380	MIR380	494329				
chr14	101029633	101029713	14q32.31	14q32.31	616036	MIR494	Micro RNA 494	MIR494	574452				
chr14	101033754	101033835	14q32.31	14q32.31	615149	MIR551A	Micro RNA 495	MIR495	574453				
chr14	101039689	101039754	14q32.31	14q32.31	610983	MIR376C, MIR368	Micro RNA 368C	MIR376C	442913				
chr14	101040068	101040147	14q32.31	14q32.31	610960	MIR376A-2, MIRN376A-2	Micro RNA 376A-2	MIR376A2	664615				
chr14	101040435	101040534	14q32.31	14q32.31	610961	MIR376B, MIRN376B	Micro RNA 376b	MIR376B	574435				
chr14	101040781	101040848	14q32.31	14q32.31	610959	MIR376A-1, MIRN376A-1	Micro RNA 376A-1	MIR376A1	494325				
chr14	101046454	101046537	14q32.31	14q32.31	615037	MIR487B	Micro RNA 487B	MIR487B	664616				
chr14	101054686	101054758	14q32.31	14q32.31	610164	MIR134	Micro RNA 134	MIR134	406924				
chr14	101055418	101055490	14q32.31	14q32.31	615385	MIR485	Micro RNA 485	MIR485	574436				
chr14	101065299	101065377	14q32.31	14q32.31	614057	MIR409, MIRN409	Micro RNA 409	MIR409	574413				
chr14	101065597	101065666	14q32.31	14q32.31	611794	MIR369, MIR369-3, MIRN369-3	Micro RNA 369	MIR369	442914				
chr14	101065911	101065990	14q32.31	14q32.31	615036	MIR410	Micro RNA 410	MIR410	574434				
chr14	101066723	101066800	14q32.31	14q32.31	616376	MIR656	Micro RNA 656	MIR656	724026				
chr14	101552220	101560421	14q32	14q32.31	608523	DIO3OS	Deiodinase, iodothyronine, type 3, opposite strand	DIO3OS	64150				
chr14	101561350	101563451	14q32	14q32.31	601038	DIO3, TXDI3	Deiodinase, iodothyronine, type 3	DIO3	1735	ENSG00000197406			Dio3 (MGI:1306782)
chr14	101760572	101927991	14q32.31	14q32.31	601645	PPP2R5C	Protein phosphatase-2, regulatory subunit B (B56), gamma isoform	PPP2R5C	5527	ENSG00000078304	pseudogene on 3p21		
chr14	101964527	102050797	14q32	14q32.31	600112	DYNC1H1, DNCL, DNECL, CMT20, MRD13, SMALED1	Dynein, cytoplasmic-1, heavy chain-1	DYNC1H1	1778	ENSG00000197102		Charcot-Marie-Tooth disease, axonal, type 20, 614228 (3), Autosomal dominant; Mental retardation, autosomal dominant 13, 614563 (3), Autosomal dominant; Spinal muscular atrophy, lower extremity-predominant 1, AD, 158600 (3), Autosomal dominant	Dync1h1 (MGI:103147)
chr14	102080737	102139748	14q32.2	14q32.31	140571	HSP90AA1, HSPCA, HSPC1, HSP90A, HSP89A, HSPCAL4, LAP2	Heat-shock protein, 90kD, alpha, class A, member 1	HSP90AA1	3320	ENSG00000080824			Hsp90aa1 (MGI:96250)
chr14	102139365	102224685	14q32.31	14q32.31	617741	WDR20	WD repeat-containing protein 20	WDR20	91833	ENSG00000140153			Wdr20 (MGI:1916891)
chr14	102224449	102305199	14q32	14q32.31	605762	RAGE, MOK	Renal tumor antigen	MOK	5891	ENSG00000080823			Mok (MGI:1336881)
chr14	102348281	102362915	14q32.31	14q32.31	613362	CINP	CDK2-interacting protein	CINP	51550	ENSG00000100865			Cinp (MGI:1914486)
chr14	102362911	102502480	14q32.31	14q32.31	615000	TECPR2, KIAA0329, SPG49	Tectonin beta-propeller repeat-containing protein 2	TECPR2	9895	ENSG00000196663		Spastic paraplegia 49, autosomal recessive, 615031 (3), Autosomal recessive	Tecpr2 (MGI:2144865)
chr14	102592592	102730575	Chr.14	14q32.31-q32.32	607675	RCOR, COREST, KIAA0071	REST corepressor	RCOR1	23186	ENSG00000089902			Rcor1 (MGI:106340)
chr14	102777478	102911499	14q32.32	14q32.32	601896	TRAF3, CD40BP, LAP1, CAP1, CRAF1, IIAE5	TNF receptor-associated factor 3	TRAF3	7187	ENSG00000131323	mutation identified in 1 IIAE5 patient	{?Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 5}, 614849 (3)	Traf3 (MGI:108041)
chr14	102922429	102933596	14q32	14q32.32	605799	AMN	Amnionless, mouse, homolog of	AMN	81693	ENSG00000166126		Megaloblastic anemia-1, Norwegian type, 261100 (3), Autosomal recessive	Amn (MGI:1934943)
chr14	102932378	103057404	14q32.3	14q32.32	614062	CDC42BPB, MRCKB	CDC42-binding protein kinase, beta	CDC42BPB	9578	ENSG00000198752			Cdc42bpb (MGI:2136459)
chr14	103121174	103137438	14q32	14q32.32	603300	TNFAIP2	Tumor necrosis factor, alpha-induced protein-2	TNFAIP2	7127	ENSG00000185215			Tnfaip2 (MGI:104960)
chr14	103334001	103345024	14q32.3	14q32.32	601710	EIF5	Eukaryotic translation initiation factor 5	EIF5	1983	ENSG00000100664			Eif5 (MGI:95309)
chr14	103385363	103503830	14q32.3	14q32.32-q32.33	602678	MARK3	MAP/microtubule affinity-regulating kinase-3	MARK3	4140	ENSG00000075413			Mark3 (MGI:1341865)
chr14	103500000	107043718	14q32.33		144120	IGHR	Immunoglobulin heavy chain regulator					?Hyperimmunoglobulin G1 syndrome, 144120 (2), Autosomal dominant	
chr14	103519657	103522858	14q32	14q32.33	123280	CKB, CKBB, BCK	Creatine kinase, brain type	CKB	1152	ENSG00000166165	distal to PI and AACT; closely linked to AKT1 and IGH; proximal to IGH		Ckb (MGI:88407)
chr14	103562956	103592186	14q32.33	14q32.33	616003	APOPT1, APOP	Apoptogenic protein 1, mitochondrial	APOPT1	84334	ENSG00000256053		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Apopt1 (MGI:1915270)
chr14	103629187	103701550	14q32.3	14q32.33	600025	KLC1, KNS2, KNS2A	Kinesin, light chain 1	KLC1	3831	ENSG00000126214			Klc1 (MGI:107978)
chr14	103697610	103715485	14q32.3	14q32.33	600675	XRCC3, CMM6	X-ray-repair, complementing defective, repair in Chinese hamster cells-3	XRCC3	7517	ENSG00000126215		{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant; {Melanoma, cutaneous malignant, 6}, 613972 (3)	Xrcc3 (MGI:1921585)
chr14	103715743	103733667	14q32.33	14q32.33	613504	ZFYVE21, ZF21	Zinc finger FYVE domain-containing protein 21	ZFYVE21	79038	ENSG00000100711			Zfyve21 (MGI:1915770)
chr14	103912287	103921565	14q32.33	14q32.33	604573	C14orf2, MP68	MP68, rat, homolog of	ATP5MPL	9556	ENSG00000156411			2010107E04Rik (MGI:1917507)
chr14	104117404	104117513	14q32.33	14q32.33	611899	MIR203, MIRN203	Micro RNA 203	MIR203A	406986				
chr14	104138722	104180897	14q32.33	14q32.33	613231	KIF26A, KIAA1236	Kinesin family member 26A	KIF26A	26153	ENSG00000066735			Kif26a (MGI:2447072)
chr14	104689605	104719609	14q32.33	14q32.33	610982	INF2, FSGS5, C14orf173, CMTDIE	Inverted formin 2	INF2	64423	ENSG00000203485		Charcot-Marie-Tooth disease, dominant intermediate E, 614455 (3), Autosomal dominant; Glomerulosclerosis, focal segmental, 5, 613237 (3)	Inf2 (MGI:1917685)
chr14	104724196	104747324	14q32.33	14q32.33	612498	ADSSL1, MPD5	Adenylosuccinate synthase-like 1	ADSSL1	122622	ENSG00000185100		Myopathy, distal, 5, 617030 (3), Autosomal recessive	Adssl1 (MGI:87947)
chr14	104769348	104795742	14q32.3	14q32.33	164730	AKT1, CWS6	Murine thymoma viral (v-akt) oncogene homolog-1	AKT1	207	ENSG00000142208	proximal to IGH	Breast cancer, somatic, 114480 (3); Colorectal cancer, somatic, 114500 (3); Cowden syndrome 6, 615109 (3); Ovarian cancer, somatic, 167000 (3); Proteus syndrome, somatic, 176920 (3); {Schizophrenia, susceptibility to}, 181500 (2), Autosomal dominant	Akt1 (MGI:87986)
chr14	104800596	104804711	14q32.33	14q32.33	613915	ZBTB42, ZNF925, LCCS6	Zinc finger- and BTB domain-containing protein 42	ZBTB42	100128927	ENSG00000179627	mutation identified in 1 LCCS6 family	?Lethal congenital contracture syndrome 6, 616248 (3), Autosomal recessive	Zbtb42 (MGI:3644133)
chr14	105009572	105021087	14q32.33	14q32.33	612270	CDCA4, HEPP	Cell division cycle-associated protein 4	CDCA4	55038	ENSG00000170779			Cdca4 (MGI:1919213)
chr14	105049388	105065549	14q32.3	14q32.33	606167	GPR132, G2A	G protein-coupled receptor-132	GPR132	29933	ENSG00000183484			Gpr132 (MGI:1890220)
chr14	105140980	105168823	14q32	14q32.33	602570	JAG2	Jagged 2	JAG2	3714	ENSG00000184916			Jag2 (MGI:1098270)
chr14	105209285	105315576	14q32.33	14q32.33	604902	BRF1, TAF3C, GTF3B, TF3B90, CFDS	BRF1, S. cerevisiae, homolog of (TATA box-binding protein-associated factor 3C)	BRF1	2972	ENSG00000185024		Cerebellofaciodental syndrome, 616202 (3), Autosomal recessive	Brf1 (MGI:1919558)
chr14	105300717	105398146	14q32.33	14q32.33	610423	PACS2, KIAA0602	Phosphofurin acidic cluster sorting protein 2	PACS2	23241	ENSG00000179364			Pacs2 (MGI:1924399)
chr14	105419848	105470728	14q32.3	14q32.33	603526	MTA1	Metastasis-associated gene 1	MTA1	9112	ENSG00000182979			Mta1 (MGI:2150037)
chr14	105472937	105480169	14q32.3	14q32.33	601183	CRIP2, CRP2	Cysteine-rich intestinal protein 2	CRIP2	1397	ENSG00000182809			
chr14	105486919	105488788	14q32.33	14q32.33	123875	CRIP1, CRIP	Cysteine-rich intestinal protein 1	CRIP1	1396	ENSG00000213145	previously assigned to 7q11.23		Crip1 (MGI:88501)
chr14	105586436	106879843	14q32.33	14q32.33	146910	IGHD@	Immunoglobulin heavy chain diversity gene cluster	IGH	3492		many genes		
chr14	105586436	106879843	14q32.33	14q32.33	147010	IGHJ@	Immunoglobulin heavy chain joining gene cluster	IGH	3492		more than 4 genes		
chr14	105586436	106879843	14q32.33	14q32.33	147070	IGHV@	Immunoglobin heavy polypeptide, variable gene cluster	IGH	3492		~250 genes; orientation: cen-PI-D14S1-IGH-IGHV--qter; 3' centromeric, 5' telomeric; IgM telomeric to IgG		
chr14	105586936	105588393	14q32.33	14q32.33	147000	IGHA2	Constant region of heavy chain of IgA2	IGHA2	3494				
chr14	105600065	105601726	14q32.33	14q32.33	147180	IGHE	Constant region of heavy chain of IgE	IGHE	3497		pseudogene IGHEP1 nearby; IGHEP2 on chr.9		
chr14	105624475	105626064	14q32.33	14q32.33	147130	IGHG4	Constant region of heavy chain of IgG4	IGHG4	3503				
chr14	105643202	105644788	14q32.33	14q32.33	147110	IGHG2	Constant region of heavy chain of IgG2	IGHG2	3501		5'-G2-17kb-G4-3'; closeness of IGG3 and IGG1 known from Lepore-like myeloma protein	IgG2 deficiency, selective (3)	
chr14	105707167	105708663	14q32.33	14q32.33	146900	IGHA1	Constant region of heavy chain of IgA1	IGHA1	3493		Fused with IRTA1 in multiple myeloma		
chr14	105741472	105743069	14q32.33	14q32.33	147100	IGHG1	Constant region of heavy chain of IgG1	IGHG1	3500				
chr14	105765913	105771404	14q32.33	14q32.33	147120	IGHG3	Constant region of heavy chain of IgG3	IGHG3	3502				
chr14	105838400	105845676	14q32.33	14q32.33	147170	IGHD	Constant region of heavy chain of IgD	IGHD	3495				
chr14	105851965	105856216	14q32.33	14q32.33	147020	IGHM, MU, AGM1	Constant region of heavy chain of IgM	IGHM	3507			Agammaglobulinemia 1, 601495 (3), Autosomal recessive	
chr14	105914358	105914388	14q32.33	14q32.33	611937	IGHD3-3, DXP4	Immunoglobulin heavy chain diversity gene 3-3	IGHD3-3	28501				
chr14	105917978	105932641	14q32.33	14q32.33	616623	KIAA0125, FAM30A, C14orf110	KIAA0125 gene, noncoding	FAM30A	9834				
chr14	106268605	106269060	14q32.33	14q32.33	611939	IGHV3-23, IGHV323, DP47, VH26	Immunoglobulin heavy chain variable gene 3-23	IGHV3-23	28442				
chr14	0	107043718	Chr.14		151020	LCH	Lentil agglutinin-binding						
chr14	0	107043718	Chr.14		608251	PHOBS	Phobia, specific		404684			Phobia, specific, 608251 (2)	
chr14	0	107043718	Chr.14		616606	RC14S	Ring chromosome 14 syndrome					Ring chromosome 14 syndrome, 616606 (4), Isolated cases	
chr15	4200000	9700000	15p12		180452	RNR3	Ribosomal RNA-3	RNR3	6054				
chr15	19000000	25500000	15q11		608636	AUTS4	Autism, susceptibility to, 4					{Autism susceptibility 4}, 608636 (2), Autosomal dominant	
chr15	19000000	33400000	15q11-q13		607202	CELIAC5, GSES	Celiac disease, susceptibility to, 5		338332		in homogeneous Finnish population	{Celiac disease, susceptibility to, 5}, 607202 (2)	
chr15	19000000	33400000	15q11-q13		609745	GLC1I	Glaucoma 1, open angle, I	GLC1I	497188		max lod at GABRB3	Glaucoma 1, open angle, I, 609745 (2)	
chr15	19000000	101991189	15q11-qter		122460	HCVS	Human coronavirus sensitivity	HCVS	3063				
chr15	19000000	101991189	15q		604329	HYT2	Hypertension, essential, susceptibility to, 2		50986			{Hypertension, essential, susceptibility to, 2}, 145500 (2), Multifactorial	
chr15	19000000	27800000	15q11-q12		146990	IGHDY2	Immunoglobulin heavy chain diversity region-2		3496		?functional		
chr15	19000000	101991189	15q		214900	LCS1, CHLS	Cholestasis-lymphedema syndrome	LCS1	84565			Cholestasis-lymphedema syndrome, 214900 (2), Autosomal recessive	
chr15	19000000	67200000	15q11-q22		107254	MIC12	Antigen identified by monoclonal antibody 30.2A8	MIC12	4273		in myoblasts, but not myotubes		
chr15	19000000	27800000	15q11-q12		108990	MIC7	Attached cell antigen 28.3.7	MIC7	4270				
chr15	19000000	33400000	15q11-q13		603857	MRKN3AS, ZNF127AS	MKRN3 antisense RNA	MKRN3-AS1	10108				
chr15	19000000	49200000	15q11-q21.1		613328	RCHTS	Roifman-Chitayat syndrome		100462676		?1p36.23-p33	?Roifman-Chitayat syndrome, 613328 (2), Autosomal recessive	
chr15	20500000	25500000	15q11.2		615656	DEL15q11.2, C15DELq11.2	Chromosome 15q11.2 deletion syndrome				deleted region spans 300-500kb between BP1 and BP2	Chromosome 15q11.2 deletion syndrome, 615656 (4), Autosomal dominant	
chr15	20500000	27800000	15q11.2-q12		609179	MGR7	Migraine with aura, susceptibility to, 7		553992		between D15S113 and D15S1019	{Migraine with aura, susceptibility to, 7}, 609179 (2)	
chr15	20669467	20756150	15q11.2	15q11.2	601889	NBEAP1, BCL8	Neurobeachin pseudogene 1	NBEAP1	606				
chr15	22786224	22829788	15q11.1	15q11.2	608145	NIPA1, SPG6	Nonimprinted gene in Prader-Willi syndrome/Angelman syndrome chromosome region 1	NIPA1	123606	ENSG00000170113		Spastic paraplegia 6, autosomal dominant, 600363 (3), Autosomal dominant	Nipa1 (MGI:2442058)
chr15	22838640	22868383	15q11.2	15q11.2	608146	NIPA2	Nonimprinted gene in Prader-Willi syndrome/Angelman syndrome chromosome region 2	NIPA2	81614	ENSG00000140157			Nipa2 (MGI:1913918)
chr15	22867051	22980905	15q11	15q11.2	606322	CYFIP1, KIAA0068	Cytoplasmic FMRP interacting protein 1	CYFIP1	23191	ENSG00000273749			Cyfip1 (MGI:1338801)
chr15	22983025	23039672	15q11.2	15q11.2	608147	TUBGCP5, GCP5, KIAA1899	Tubulin-gamma complex-associated protein 5	TUBGCP5	114791	ENSG00000275835			Tubgcp5 (MGI:2178836)
chr15	23565306	23568019	15q11-q13	15q11.2	603856	MKRN3, ZFP127, ZNF127, CPPB2	Makorin 3	MKRN3	7681	ENSG00000179455	expressed only from paternal allele	Precocious puberty, central, 2, 615346 (3), Autosomal dominant	Mkrn3 (MGI:2181178)
chr15	23643548	23647845	15q11.2	15q11.2	605283	MAGEL2, NDNL1, SHFYNG	MAGE-like 2	MAGEL2	54551	ENSG00000254585		Schaaf-Yang syndrome, 615547 (3), Autosomal dominant	Magel2 (MGI:1351648)
chr15	23685406	23687302	15q11-q13	15q11.2	602117	NDN	Necdin	NDN	4692	ENSG00000182636		Prader-Willi syndrome, 176270 (3), Isolated cases	Ndn (MGI:97290)
chr15	24164776	24169947	15q11.2	15q11.2	611217	PWRN2	Prader-Willi region noncoding RNA 2	PWRN2	791115				
chr15	24558156	24587779	15q11.2	15q11.2	611215	PWRN1	Prader-Willi region noncoding RNA 1	PWRN1	791114				
chr15	24675393	24683445	15q11.2	15q11.2	610922	NPAP1, C15orf2	Nuclear pore associated protein 1	NPAP1	23742	ENSG00000185823			
chr15	24823607	25419461	15q11.2	15q11.2	616259	SNHG14, LNCAT, UBE3AATS	Small nucleolar RNA host gene 14	SNHG14	104472715				
chr15	24823607	24978722	15q12	15q11.2	182279	SNRPN	Small nuclear ribonucleoprotein polypeptide N	SNRPN	6638	ENSG00000128739		Prader-Willi syndrome, 176270 (3), Isolated cases	Snrpn (MGI:98347)
chr15	24984859	24988231	15q11-q13	15q11.2	600162	D15S226E, PAR5	Prader-Willi/Angelman syndrome-5	PWAR5	8123		paternally imprinted		
chr15	25051475	25051571	15q11.2	15q11.2	605436	SNORD116-1, PWCR1	Small nucleolar RNA, C/D box, 116-1	SNORD116-1	100033413				
chr15	25116544	25122475	15q11-q13	15q11.2	601491	IPW	Imprinted in Prader-Willi syndrome	IPW	3653				
chr15	25135641	25138052	15q11-q13	15q11.2	600161	D15S227E, PAR1	Prader-Willi/Angelman region-1	PWAR1	145624		paternally imprinted		
chr15	25170722	25170803	15q11.2	15q11.2	609837	SNORD115-1, RNHBII52	Small nucleolar RNA, C/D box, 115-1	SNORD115-1	338433				
chr15	25337233	25439380	15q11-q13	15q11.2	601623	UBE3A, ANCR	Ubiquitin protein ligase E3A	UBE3A	7337	ENSG00000114062	same location as PWS	Angelman syndrome, 105830 (3), Isolated cases	Ube3a (MGI:105098)
chr15	25500000	27800000	15q12		610321	HPC7	Prostate cancer, hereditary, 7		100188809			{Prostate cancer, hereditary, 7}, 610321 (2)	
chr15	25500000	44500000	15q12-q15		605738	MCOPCB2	Microphthalmia, isolated, with coloboma 2		80771			Microphthalmia with coloboma 2, 605738 (2)	
chr15	25672240	25865143	15q11-q13	15q12	605855	ATP10A, ATP10C, ATPVC	ATPase, class V, type 10A	ATP10A	57194	ENSG00000206190			Atp10a (MGI:1330809)
chr15	26543545	26773787	15q11.2-q12	15q12	137192	GABRB3, ECA5, EIEE43	Gamma-aminobutyric acid (GABA) A receptor, beta-3	GABRB3	2562	ENSG00000166206		{Epilepsy, childhood absence, susceptibility to, 5}, 612269 (3); Epileptic encephalopathy, early infantile, 43, 617113 (3), Autosomal dominant	Gabrb3 (MGI:95621)
chr15	26866718	26949209	15q11.2-q12	15q12	137142	GABRA5	Gamma-aminobutyric acid (GABA) A receptor, alpha-5	GABRA5	2558	ENSG00000186297	100kb from GABRB3		Gabra5 (MGI:95617)
chr15	26971281	27541118	15q11.2-q12	15q12	600233	GABRG3	Gamma-aminobutyric acid (GABA) A receptor, gamma-3	GABRG3	2567	ENSG00000182256	cen--G3--A5--B3		Gabrg3 (MGI:95624)
chr15	27719007	28099341	15q11.2-q12	15q12-q13	611409	OCA2, P, PED, D15S12, BOCA, EYCL3, HCL3, SHEP1	Pink-eye dilution, murine, homolog of (oculocutaneous albinism II)	OCA2	4948	ENSG00000104044	?hypopigmentation in PWS and AS	Albinism, brown oculocutaneous, 203200 (3), Autosomal recessive; Albinism, oculocutaneous, type II, 203200 (3), Autosomal recessive; [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3), Autosomal recessive; [Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3), Autosomal recessive	Oca2 (MGI:97454)
chr15	27800000	44500000	15q13-q15		109710	B2MR	Beta-2-microglobulin regulator	B2MR	568				
chr15	27800000	42500000	15q13.1-q15.1		608646	CILD4	Ciliary dyskinesia, primary, 4		408257		between D15S1012 and D15S1048	Ciliary dyskinesia, primary, 4, 608646 (2)	
chr15	27800000	33400000	15q13		613025	SCZD13	Schizophrenia 13		100329170		associated with deletion at 15q13.3	{Schizophrenia, susceptibility to, 13}, 613025 (2)	
chr15	27800000	33400000	15q13		208500	SRTD1, ATD1	Short-rib thoracic dysplasia 1 with or without polydactyly	ATD	465			Short-rib thoracic dysplasia 1 with or without polydactyly, 208500 (2), Autosomal recessive	
chr15	28111036	28322172	15q13.1	15q13.1	605837	HERC2, SHEP1, MRT38	HECT domain and RCC1-like domain 2	HERC2	8924	ENSG00000128731	mutations in intron 4	Mental retardation, autosomal recessive 38, 615516 (3), Autosomal recessive; [Skin/hair/eye pigmentation 1, blond/brown hair], 227220 (3), Autosomal recessive; [Skin/hair/eye pigmentation 1, blue/nonblue eyes], 227220 (3), Autosomal recessive	Herc2 (MGI:103234)
chr15	28885478	29118314	15q	15q13.1	602712	APBA2	Amyloid beta A4 precursor protein-binding, family A, member 2	APBA2	321	ENSG00000034053			Apba2 (MGI:1261791)
chr15	29268148	29269815	15q13.1	15q13.1	608243	NSMCE3, NDNL2, MAGEG1, LICS	NSE3 homolog, SMC5-SMC6 complex component	NSMCE3	56160	ENSG00000185115		Lung disease, immunodeficiency, and chromosome breakage syndrome, 617241 (3), Autosomal recessive	Nsmce3 (MGI:1913897)
chr15	29699366	29968923	15q13	15q13.1	601009	TJP1	Tight junction protein 1 (zona occludens 1)	TJP1	7082	ENSG00000104067			Tjp1 (MGI:98759)
chr15	30626147	30649181	15q13.2	15q13.2	616310	ARHGAP11B, FAM7B1	RHO GTPase-activating protein 11B	ARHGAP11B	89839	ENSG00000285077			
chr15	30900000	33400000	15q13.3		612001	DEL15q13.3, MICRODEL15q13.3	Chromosome 15q13.3 microdeletion syndrome					Chromosome 15q13.3 microdeletion syndrome, 612001 (4)	
chr15	30903851	30943107	15q13.2-q13.3	15q13.3	613534	FAN1, MTMR15, KIAA1018, KMIN	FANCD2/FANCI-associated nuclease 1	FAN1	22909	ENSG00000198690		Interstitial nephritis, karyomegalic, 614817 (3), Autosomal recessive	Fan1 (MGI:3045266)
chr15	31001060	31161272	15q13-q14	15q13.3	603576	TRPM1, MLSN1, CSNB1C	Transient receptor potential cation channel, subfamily M, member 1 (melastatin)	TRPM1	4308	ENSG00000134160		Night blindness, congenital stationary (complete), 1C, autosomal recessive, 613216 (3)	Trpm1 (MGI:1330305)
chr15	31065031	31065140	15q13.3	15q13.3	613753	MIR211, MIRN211	Micro RNA 211	MIR211	406993				
chr15	31326854	31435664	15q12	15q13.3	605328	KLF13, RFLAT1, FKLF2	Kruppel-like factor 13	KLF13	51621	ENSG00000169926			Klf13 (MGI:1354948)
chr15	31475397	31870671	15q13.3	15q13.3	612024	OTUD7A, OTUD7, C16orf15, CEZANNE2	OTU domain-containing protein 7A	OTUD7A	161725	ENSG00000169918			Otud7a (MGI:2158505)
chr15	32030461	32172520	15q14	15q13.3	118511	CHRNA7	Cholinergic receptor, nicotinic, alpha polypeptide-7	CHRNA7	1139	ENSG00000175344			Chrna7 (MGI:99779)
chr15	32615143	32639936	15q13.2	15q13.3	610589	ARHGAP11A, KIAA0013	RHO GTPase-activating protein 11A	ARHGAP11A	9824	ENSG00000198826			Arhgap11a (MGI:2444300)
chr15	32641612	32697097	15q11-q15	15q13.3	173120	SCG5, SGNE1	Secretogranin V (7B2 protein )	SCG5	6447	ENSG00000166922			Scg5 (MGI:98289)
chr15	32718003	32734668	15q13-q15	15q13.3	603054	GREM1, CKTSF1B1	Gremlin 1 homolog, cystine knot superfamily	GREM1	26585	ENSG00000166923			Grem1 (MGI:1344337)
chr15	32765543	33194764	15q13-q14	15q13.3	136535	FMN, LD	Formin (limb deformity)	FMN1	342184	ENSG00000248905			Fmn1 (MGI:101815)
chr15	33310772	33866102	15q14-q15	15q13-q14	180903	RYR3	Ryanodine receptor-3	RYR3	6263	ENSG00000198838			Ryr3 (MGI:99684)
chr15	33400000	39800000	15q14		616898	DEL15q14, C15DELq14	Chromosome 15q14 deletion syndrome					Chromosome 15q14 deletion syndrome, 616898 (4), Autosomal dominant	
chr15	33400000	39800000	15q14		604827	EIG7, EJM2	Epilepsy, idiopathic generalized, susceptibility to, 7	EJM2	50715		?role of CHRNA7	{Epilepsy, idiopathic generalized, susceptibility to, 7}, 604827 (2), Autosomal recessive; Epilepsy, juvenile myoclonic, 604827 (2), Autosomal recessive	
chr15	33968313	34065093	15q26	15q14	118496	CHRM5	Cholinergic receptor, muscarinic, 5	CHRM5	1133	ENSG00000184984			Chrm5 (MGI:109248)
chr15	33851784	34074876	Chr.15	15q14	605265	AVEN	Cell death regulator AVEN	AVEN	57099	ENSG00000169857			Aven (MGI:1921518)
chr15	34140673	34210095	15q14	15q14	616235	KATNBL1, C15orf29	Katanin, p80 subunit, B-like 1	KATNBL1	79768	ENSG00000134152			Katnbl1 (MGI:1919675)
chr15	34224996	34230164	15q14	15q14	616245	EMC4, TMEM85, PIG17	ER membrane protein complex subunit 4	EMC4	51234	ENSG00000128463			Emc4 (MGI:1915282)
chr15	34229995	34338063	15q13-q14	15q14	604878	SLC12A6, KCC3A, KCC3B, KCC3, ACCPN	Solute carrier family 12 (potassium/chloride transporters), member 6	SLC12A6	9990	ENSG00000140199		Agenesis of the corpus callosum with peripheral neuropathy, 218000 (3), Autosomal recessive	Slc12a6 (MGI:2135960)
chr15	34341715	34343160	15q14-q15	15q14	606471	NOLA3, NOP10, DKCB1	Nucleolar protein family A, member 3	NOP10	55505	ENSG00000182117		Dyskeratosis congenita, autosomal recessive 1, 224230 (3), Autosomal recessive	Nop10 (MGI:1913431)
chr15	34358887	34367195	15q14	15q14	612039	AGPAT7, AYTL3	1-acylglycerol-3-phosphate O-acyltransferase 7	LPCAT4	254531	ENSG00000176454			Lpcat4 (MGI:2138993)
chr15	34379067	34437465	15q14	15q14	616180	GOLGA8A, KIAA0855	Golgin A8 family, member A	GOLGA8A	23015	ENSG00000175265			
chr15	34525275	34583650	15q14	15q14	609619	GOLGA8B, KIAA0855	Golgi autoantigen, golgin subfamily A, 8B	GOLGA8B	440270	ENSG00000215252			
chr15	34751745	34754954	15q14	15q14	607058	GJD2, GJA9, CX36	Gap junction protein, delta-2 (connexin 36)	GJD2	57369	ENSG00000159248			Gjd2 (MGI:1334209)
chr15	34788095	34795725	15q14	15q14	102540	ACTC1, CMD1R, CMH11, ASD5, LVNC4	Actin, alpha, cardiac muscle	ACTC1	70	ENSG00000159251		Atrial septal defect 5, 612794 (3), Autosomal dominant; Cardiomyopathy, dilated, 1R, 613424 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 11, 612098 (3), Autosomal dominant; Left ventricular noncompaction 4, 613424 (3), Autosomal dominant	Actc1 (MGI:87905)
chr15	34856350	34969793	15q14	15q14	610548	AQR, IBP160, KIAA0560	Aquarius, mouse, homolog of	AQR	9716	ENSG00000021776			Aqr (MGI:1276102)
chr15	36579602	36810259	15q14	15q14	615626	C15orf41	Chromosome 15 open reading fram 41	C15orf41	84529	ENSG00000186073		Dyserythropoietic anemia, congenital, type Ib, 615631 (3), Autosomal recessive	BC052040 (MGI:3026886)
chr15	36891020	37101298	15q14-q25	15q14	601740	MEIS2, MRG1, CPCMR	Meis1, mouse, homolog of, 2	MEIS2	4212	ENSG00000134138		Cleft palate, cardiac defects, and mental retardation, 600987 (3), Autosomal dominant	Meis2 (MGI:108564)
chr15	38252086	38357248	15q13.2	15q14	609291	SPRED1, NFLS	Sprouty-related EVH1 domain-containing protein 1	SPRED1	161742	ENSG00000166068		Legius syndrome, 611431 (3), Autosomal dominant	Spred1 (MGI:2150016)
chr15	38454126	38487709	15q14	15q14	616142	FAM98B	Family with sequence similarity 98, member B	FAM98B	283742	ENSG00000171262			Fam98b (MGI:1915465)
chr15	38488096	38564805	15q15	15q14	603962	RASGRP1	Ras guanyl nucleotide releasing protein-1	RASGRP1	10125	ENSG00000172575			Rasgrp1 (MGI:1314635)
chr15	39581078	39598917	15q15	15q14	188060	THBS1	Thrombospondin 1	THBS1	7057	ENSG00000137801			Thbs1 (MGI:98737)
chr15	39597280	39782837	15q14	15q14	615795	FSIP1, HSD10	Fibrous sheath-interacting protein 1	FSIP1	161835	ENSG00000150667			Fsip1 (MGI:1918563)
chr15	39795048	39920938	15q14-q15	15q14-q15	612183	GPR176	G protein-coupled receptor 176	GPR176	11245	ENSG00000166073			Gpr176 (MGI:2685858)
chr15	39800000	44500000	15q15		605419	SCZD10	Schizophrenia 10	SCZD10	63944		between D15S1042 and D15S659	{Schizophrenia 10}, 605419 (2), Autosomal dominant	
chr15	39934100	40036152	15q15.1	15q15.1	609280	EIF2AK4, GCN2, KIAA1338, PVOD2	Eukaryotic translation initiation factor 2-alpha kinase 4	EIF2AK4	440275	ENSG00000128829		Pulmonary venoocclusive disease 2, 234810 (3), Autosomal recessive	Eif2ak4 (MGI:1353427)
chr15	40035689	40039201	15q22	15q15.1	600708	SRP14	Signal recognition particle 14kD (homologous Alu RNA-binding protein)	SRP14	6727	ENSG00000140319			Srp14 (MGI:107169)
chr15	40087889	40108883	15q14	15q15.1	606266	BMF	BCL2-modifying factor	BMF	90427	ENSG00000104081			Bmf (MGI:2176433)
chr15	40161008	40221135	15q15	15q15.1	602860	BUB1B, BUBR1, MVA1	Budding uninhibited by benzimidazoles 1, S. cerevisiae, homolog of, beta	BUB1B	701	ENSG00000156970		Colorectal cancer, somatic, 114500 (3); Mosaic variegated aneuploidy syndrome 1, 257300 (3), Autosomal recessive; [Premature chromatid separation trait], 176430 (3), Autosomal dominant	Bub1b (MGI:1333889)
chr15	40239090	40277486	15q15.1	15q15.1	608110	PAK6	p21-activated kinase 6	PAK6	56924	ENSG00000137843			Pak6 (MGI:2679420)
chr15	40285495	40307972	15q15	15q15.1	604114	PLCB2	Phospholipase C, beta-2	PLCB2	5330	ENSG00000137841		Platelet PLC beta-2 deficiency (1)	Plcb2 (MGI:107465)
chr15	40354358	40375988	Chr.15	15q15.1	607503	DISPB, KIAA1742	Dispatched, Drosophila, homolog of, B	DISP2	85455	ENSG00000140323			Disp2 (MGI:2388733)
chr15	40382720	40394287	15q15.1	15q15.1	614718	KNSTRN, C15orf23, SKAP	Kinetochore-localized astrin/SPAG5 binding protein	KNSTRN	90417	ENSG00000128944			Knstrn (MGI:1289298)
chr15	40405484	40435947	15q14-q15	15q15.1	607036	IVD	Isovaleryl Coenzyme A dehydrogenase	IVD	3712	ENSG00000128928		Isovaleric acidemia, 243500 (3), Autosomal recessive	Ivd (MGI:1929242)
chr15	40439720	40468241	15q15.1	15q15.1	613880	BAHD1, KIAA0945	BROMO-adjacent homology domain-containing protein 1	BAHD1	22893	ENSG00000140320			Bahd1 (MGI:2139371)
chr15	40470960	40473157	15q14	15q15.1	608429	CHST14, D4ST1, ATCS, EDSMC1	Carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 14	CHST14	113189	ENSG00000169105		Ehlers-Danlos syndrome, musculocontractural type 1, 601776 (3), Autosomal recessive	Chst14 (MGI:1919386)
chr15	40594011	40664341	15q15.1	15q15.1	609173	KNL1, CASC5, AF15Q14, KIAA1570, D40, MCPH4	Kinetochore scaffold 1	KNL1	57082	ENSG00000137812		Microcephaly 4, primary, autosomal recessive, 604321 (3), Autosomal recessive	Knl1 (MGI:1923714)
chr15	40694773	40732339	15q15.1	15q15.1	179617	RAD51A, RECA, MRMV2, FANCR	RAD51, S. cerevisiae, homolog of, A (E. coli RecA homolog)	RAD51	5888	ENSG00000285396	mutation identified in 1 FANCR patient	{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant; ?Fanconi anemia, complementation group R, 617244 (3), Autosomal dominant; Mirror movements 2, 614508 (3), Autosomal dominant	Rad51 (MGI:97890)
chr15	40735883	40755335	15q15.1	15q15.1	611873	FAM82A2, FAM82C, RMD3, PTPIP51	Family with sequence similarity 82, member A2	RMDN3	55177	ENSG00000137824			Rmdn3 (MGI:1915059)
chr15	40764086	40767712	15q15.1	15q15.1	602437	GCHFR, GFRP	GTP cyclohydrolase I feedback regulatory protein	GCHFR	2644	ENSG00000137880			Gchfr (MGI:2443977)
chr15	40767447	40807477	15q15.1	15q15.1	616844	DNAJC17	DNAJ/HSP40 homolog, subfamily C, member 17	DNAJC17	55192	ENSG00000104129			Dnajc17 (MGI:1916658)
chr15	40815444	40828792	15q15.1	15q15.1	613256	PPP1R14D, GBPI1	Protein phosphatase 1, regulatory subunit 14D	PPP1R14D	54866	ENSG00000166143			Ppp1r14d (MGI:1919362)
chr15	40894409	40903974	15q15.1	15q15.1	608551	VPS18	Vacuolar protein sorting 18, yeast, homolog of	VPS18	57617	ENSG00000104142			Vps18 (MGI:2443626)
chr15	40929332	40939059	15q21.1	15q15.1	605185	DLL4, AOS6	Delta-like 4	DLL4	54567	ENSG00000128917		Adams-Oliver syndrome 6, 616589 (3), Autosomal dominant	Dll4 (MGI:1859388)
chr15	40942136	40956518	15q15.1	15q15.1	614587	CHAC1	ChaC, E. coli, homolog of, 1	CHAC1	79094	ENSG00000128965			Chac1 (MGI:1916315)
chr15	40978879	41117777	15q15.1	15q15.1	610169	INO80, INOC1	INO80 complex subunit	INO80	54617	ENSG00000128908			Ino80 (MGI:1915392)
chr15	41231155	41281886	15q13.3	15q15.1	606988	CHP	Calcineurin B homologous protein	CHP1	11261	ENSG00000187446			Chp1 (MGI:1927185)
chr15	41332693	41381049	15q15.1	15q15.1	612818	NUSAP1, ANKT, NUSAP	Nucleolar and spindle-associated protein 1	NUSAP1	51203	ENSG00000137804			Nusap1 (MGI:2675669)
chr15	41387348	41402500	15q13.3	15q15.1	606934	NDUFAF1, CIA30, CGI65	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, assembly factor 1	NDUFAF1	51103	ENSG00000137806		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufaf1 (MGI:1916952)
chr15	41417103	41483562	15q15.1	15q15.1	611633	RTF1, KIAA0252	RTF1, S. cerevisiae, homolog of	RTF1	23168	ENSG00000137815			Rtf1 (MGI:1309480)
chr15	41493857	41503558	15q14-q21	15q15.1	147521	ITPKA	Inositol 1,4,5-trisphosphate 3-kinase A	ITPKA	3706	ENSG00000137825			Itpka (MGI:1333822)
chr15	41503638	41513886	15q15.1-q21.1	15q15.1	151520	LTK, TYK1	Leukocyte tyrosine kinase	LTK	4058	ENSG00000062524			Ltk (MGI:96840)
chr15	41517175	41544276	15q15.1	15q15.1	611475	RPAP1, KIAA1403	RNA polymerase II-associated protein 1	RPAP1	26015	ENSG00000103932			Rpap1 (MGI:1916175)
chr15	41559021	41579337	15q15.1	15q15.1	600341	TYRO3	TYRO3 protein tyrosine kinase	TYRO3	7301	ENSG00000092445			Tyro3 (MGI:104294)
chr15	41621224	41769942	15q15	15q15.1	616061	MGA, KIAA0518	MAX dimerization protein MGA	MGA	23269	ENSG00000174197			Mga (MGI:1352483)
chr15	41774433	41827854	15q13	15q15.1	616786	MAPKBP1, JNKBP1, NPHP20	Mitogen-activated protein kinase-binding protein 1	MAPKBP1	23005	ENSG00000137802		Nephronophthisis 20, 617271 (3), Autosomal recessive	Mapkbp1 (MGI:1347004)
chr15	41848145	41894076	15q21	15q15.1	605916	SPTBN5, BSPECV	Spectrin, beta, non-erythrocytic 5	SPTBN5	51332	ENSG00000137877			Sptbn5 (MGI:2685200)
chr15	41838812	41848147	Chr.15	15q15.1	606088	PLA2G4B	Phospholipase A2, group IVB	PLA2G4B	100137049	ENSG00000243708			Pla2g4b (MGI:2384819)
chr15	41899439	41972556	15q11.1	15q15.1	605892	EHD4	EH domain-containing 4	EHD4	30844	ENSG00000103966			Ehd4 (MGI:1919619)
chr15	42067561	42094558	15q15	15q15.1	612864	PLA2G4D	Phospholipase A2, Group IVD	PLA2G4D	283748	ENSG00000159337			Pla2g4d (MGI:1925640)
chr15	42158700	42208330	15q15.1	15q15.1	612188	VPS39, VAM6, TLP, KIAA0770	Vacuolar protein sorting 39, yeast, homolog of	VPS39	23339	ENSG00000166887			Vps39 (MGI:2443189)
chr15	42273657	42353665	15q15.1-q15.2	15q15.1	104180	GANC	Neutral alpha-glucosidase C	GANC	2595	ENSG00000214013			Ganc (MGI:1923301)
chr15	42359499	42412316	15q15.1-q21.1	15q15.1	114240	CAPN3, CANP3	Calpain, large polypeptide L3	CAPN3	825	ENSG00000092529		Muscular dystrophy, limb-girdle, type 2A, 253600 (3), Autosomal recessive	Capn3 (MGI:107437)
chr15	42491243	42533060	15q21-q22	15q15.1-q15.2	602534	SNAP23	Synaptosomal-associated protein, 23kD	SNAP23	8773	ENSG00000092531			Snap23 (MGI:109356)
chr15	42548812	42569993	15q15.2	15q15.2	613429	HAUS2, CEP27	HAUS augmin-like complex, subunit 2	HAUS2	55142	ENSG00000137814			Haus2 (MGI:1913546)
chr15	42575609	42720997	15q15	15q15.2	614642	STARD9, KIAA1300	START domain-containing protein 9	STARD9	57519	ENSG00000159433			Stard9 (MGI:3045258)
chr15	42723543	42737132	15q15	15q15.2	607465	CDAN1, CDA1, CDAN1A	Codanin 1	CDAN1	146059	ENSG00000140326		Dyserythropoietic anemia, congenital, type Ia, 224120 (3), Autosomal recessive	Cdan1 (MGI:1916218)
chr15	42738973	42920994	15q15.2	15q15.2	611695	TTBK2, SCA11	Tau tubulin kinase 2	TTBK2	146057	ENSG00000128881		Spinocerebellar ataxia 11, 604432 (3), Autosomal dominant	Ttbk2 (MGI:2155779)
chr15	42942896	43106087	15q15-q21.1	15q15.2	605981	UBR1, JBS	Ubiquitin-protein ligase E3-alpha	UBR1	197131	ENSG00000159459		Johanson-Blizzard syndrome, 243800 (3), Autosomal recessive	Ubr1 (MGI:1277977)
chr15	43185117	43197176	Chr.15	15q15.2	607089	CCNDBP1, GCIP	Cyclin D-type-binding protein 1	CCNDBP1	23582	ENSG00000166946			Ccndbp1 (MGI:109595)
chr15	43197226	43225855	15q15	15q15.2	177070	EPB42, SPH5	Erythrocyte surface protein band 4.2	EPB42	2038	ENSG00000166947		Spherocytosis, type 5, 612690 (3)	Epb42 (MGI:95402)
chr15	43232594	43266856	15q15.2	15q15.2	603805	TGM5, TGX, PSS2	Transglutaminase 5	TGM5	9333	ENSG00000104055		Peeling skin syndrome 2, 609796 (3), Autosomal recessive	Tgm5 (MGI:1921426)
chr15	43276276	43302254	15q15.2	15q15.2-q15.3	606776	TGM7, TGMZ	Transglutaminase 7	TGM7	116179	ENSG00000159495			Tgm7 (MGI:2151164)
chr15	43300000	44500000	15q15.3		611102	DEL15q15.3, C15DELq15.3	Chromosome 15q15.3 deletion syndrome					Deafness and male infertility, 611102 (4), Autosomal recessive	
chr15	43300000	44500000	15q15.3		134600	FRTS1, FRTS, RFS	Fanconi renotubular syndrome		65211			Fanconi renotubular syndrome 1, 134600 (2), Autosomal dominant	
chr15	43300000	59000000	15q15.3-q22.1		601228	HMPS1, CRAC1, CRCS4, DUP15q, C15DUPq	Polyposis syndrome, mixed, hereditary 1				duplication of 40kb of 15q resulting in overexpression of GREM1	{Colorectal cancer, susceptibility to, 4}, 601228 (4), Autosomal dominant; Polyposis syndrome, mixed hereditary 1, 601228 (4), Autosomal dominant	
chr15	43327775	43330621	15q15.3	15q15.3	611246	LCMT2, TYW4, KIAA0547	Leucine carboxyl methyltransferase 2	LCMT2	9836	ENSG00000168806			Lcmt2 (MGI:1353659)
chr15	43371058	43409770	15q15	15q15.3	609610	TUBGCP4, GCP4, MCCRP3	Tubulin-gamma complex-associated protein 4	TUBGCP4	27229	ENSG00000137822		Microcephaly and chorioretinopathy, autosomal recessive, 3, 616335 (3), Autosomal recessive	Tubgcp4 (MGI:1196293)
chr15	43403063	43510727	15q15-q21	15q15.3	605230	TP53BP1, 53BP1	Tumor protein p53-binding protein-1	TP53BP1	7158	ENSG00000067369			Trp53bp1 (MGI:1351320)
chr15	43517607	43531619	15q13-qter	15q15.3	600178	MAP1A, MAP1L	Microtubule-associated protein 1A	MAP1A	4130	ENSG00000166963			Map1a (MGI:1306776)
chr15	43533461	43590271	15q15.3	15q15.3	610979	PPIP5K1, HISPPD2A, IPS1, KIAA0377	Diphosphoinositol pentakisphosphate kinase 1	PPIP5K1	9677	ENSG00000168781			Ppip5k1 (MGI:2443281)
chr15	43592856	43599405	15q15	15q15.3	123290	CKMT1B, CKMT1	Creatine kinase, mitochondrial 1B	CKMT1B	1159	ENSG00000237289	centromeric to CKMT1A		Ckmt1 (MGI:99441)
chr15	43599562	43618799	15q15	15q15.3	606440	STRC, DFNB16	Stereocilin	STRC	161497	ENSG00000242866		Deafness, autosomal recessive 16, 603720 (3), Autosomal recessive	Strc (MGI:2153816)
chr15	43630561	43648883	15q15.1-q15.3	15q15.3	607249	CATSPER2	Cation channel, sperm-associated, 2	CATSPER2	117155	ENSG00000166762	in region with tandem duplication containing a CATSPER2 pseudogene		Catsper2 (MGI:2387404)
chr15	43692643	43699221	15q15	15q15.3	613415	CKMT1A	Creatine kinase, mitochondrial 1A	CKMT1A	548596	ENSG00000223572	telomeric to CKMT1B		Ckmt1 (MGI:99441)
chr15	43746391	43772605	15q15	15q15.3	602046	GRP58	Glucose regulated protein, 58kD	PDIA3	2923	ENSG00000167004			Pdia3 (MGI:95834)
chr15	43772599	43777303	15q15.3	15q15.3	609885	ELL3	Elongation factor, RNA polymerase II, 3	ELL3	80237	ENSG00000128886			Ell3 (MGI:2673679)
chr15	43777095	43796088	15q14.3	15q15.3	605054	SERF2, H4F5REL	Small EDRK-rich factor 2	SERF2	10169	ENSG00000140264			Serf2 (MGI:1337041)
chr15	43794173	43800096	15q15.3	15q15.3	614550	SERINC4	Serine incorporator 4	SERINC4	619189	ENSG00000184716			Serinc4 (MGI:2441842)
chr15	43800420	43802588	15q15.3	15q15.3	612784	HYPK	Huntingtin-interacting protein K	HYPK	25764	ENSG00000242028			Hypk (MGI:1914943)
chr15	43804534	43824752	15q15-q12	15q15.3	600215	MFAP1	Microfibrillar-associated protein-1	MFAP1	4236	ENSG00000140259			Mfap1a,Mfap1b (MGI:3694697,MGI:1914782)
chr15	43870760	44195293	15q15.3	15q15.3	616309	FRMD5	FERM domain-containing protein 5	FRMD5	84978	ENSG00000171877			Frmd5 (MGI:2442557)
chr15	44500000	58800000	15q21		105600	CDAN3, CDA3	Congenital dyserythropoietic anemia, type III	CDAN3	981			Dyserythropoietic anemia, congenital, type III, 105600 (2), Autosomal dominant	
chr15	44500000	67200000	15q21-q22		605728	CTRCT25, CCSSO	Cataract 25		80770			Cataract 25, 605728 (2)	
chr15	44537067	44562802	15q15.3	15q21.1	603910	EIF3J, EIF3S1	Eukaryotic translation initiation factor 3, subunit J	EIF3J	8669	ENSG00000104131			Eif3j2,Eif3j1 (MGI:1925905,MGI:3704486)
chr15	44562695	44663677	15q21.1	15q21.1	610844	SPG11, KIAA1840, FLJ21439, ALS5, CMT2X	Spastascin	SPG11	80208	ENSG00000104133		Amyotrophic lateral sclerosis 5, juvenile, 602099 (3), Autosomal recessive; Charcot-Marie-Tooth disease, axonal, type 2X, 616668 (3), Autosomal recessive; Spastic paraplegia 11, autosomal recessive, 604360 (3), Autosomal recessive	Spg11 (MGI:2444989)
chr15	44665731	44711405	15q21.1	15q21.1	614661	PATL2, PAT1A, OOMD4	Protein associated with topoisomerase II, S. Cerevisiae, homolog of	PATL2	197135	ENSG00000229474		Oocyte maturation defect 4, 617743 (3), Autosomal recessive	Patl2 (MGI:1914828)
chr15	44711486	44718158	15q21-q22	15q21.1	109700	B2M, IMD43	Beta-2-microglobulin	B2M	567	ENSG00000166710	mutation identified in 1 FVA family	?Amyloidosis, familial visceral, 105200 (3), Autosomal dominant; Immunodeficiency 43, 241600 (3), Autosomal recessive	B2m (MGI:88127)
chr15	44736361	44767828	15q21.1	15q21.1	616017	TRIM69, TRIF, RNF36	Tripartite motif-containing protein 69	TRIM69	140691	ENSG00000185880			Trim69 (MGI:1918178)
chr15	44956673	44979222	15q21.1	15q21.1	617131	TERB2, C15orf43	Telomere repeat-binding bouquet formation protein 2	TERB2	145645	ENSG00000167014			Terb2 (MGI:1921651)
chr15	45023103	45075088	15q15.3	15q21.1	182500	SORD, SORD1	Sorbitol dehydrogenase	SORD	6652	ENSG00000140263		?Cataract, congenital, 182500 (2)	Sord (MGI:98266)
chr15	45092647	45114160	15q15.3	15q21.1	606759	DUOX2, THOX2, TDH6	Dual oxidase 2 (thyroid oxidase 2)	DUOX2	50506	ENSG00000140279		Thyroid dyshormonogenesis 6, 607200 (3), Autosomal recessive	Duox2 (MGI:3036280)
chr15	45114320	45118105	15q15	15q21.1	612772	DUOXA2, TDH5	Dual oxidase maturation factor 2	DUOXA2	405753	ENSG00000140274	head-to-head with DUOX2	Thyroid dyshormonogenesis 5, 274900 (3), Autosomal recessive	Duoxa2 (MGI:1914061)
chr15	45117365	45129937	15q15	15q21.1	612771	DUOXA1	Dual oxidase maturation factor 1	DUOXA1	90527	ENSG00000140254	tail-to-tail with DUOXA2		Duoxa1 (MGI:2384861)
chr15	45129993	45165577	15q15.3	15q21.1	606758	DUOX1, THOX1	Dual oxidase 1 (thyroid oxidase 1)	DUOX1	53905	ENSG00000137857			Duox1 (MGI:2139422)
chr15	45167213	45201174	15q21.1	15q21.1	617313	SHF	SH2 domain-containing adaptor protein F	SHF	90525	ENSG00000138606			Shf (MGI:3613669)
chr15	45252229	45275933	15q15	15q21.1	606208	SLC28A2, CNT2, SPNT1	Solute carrier family 28 (sodium-coupled nucleoside transporter), member 2	SLC28A2	9153	ENSG00000137860			Slc28a2 (MGI:1913105)
chr15	45361123	45402316	15q21.1	15q21.1	602360	GATM, AGAT, CCDS3	L-arginine:glycine amidinotransferase	GATM	2628	ENSG00000171766		Cerebral creatine deficiency syndrome 3, 612718 (3), Autosomal recessive	Gatm (MGI:1914342)
chr15	45430528	45433448	15q21.1	15q21.1	608409	NMES1	Normal mucosa of esophagus-specific gene 1	C15orf48	84419	ENSG00000166920			AA467197 (MGI:3034182)
chr15	45479612	45523754	15q21.1	15q21.1	602095	SLC30A4, ZNT4	Solute carrier family 30 (zinc transporter), member 4	SLC30A4	7782	ENSG00000104154			Slc30a4 (MGI:1345282)
chr15	45511135	45556729	15q21.1	15q21.1	611314	HMGN2P46, C15orf21	High mobility group nucleosomal binding domain 2 pseudogene 46	HMGN2P46	283651				
chr15	45587122	45609715	15q15	15q21.1	604310	BLOC1S6, BLOS6, PLDN, PA, HPS9	Biogenesis of lysosome-related organelles complex 1, subunit 6	BLOC1S6	26258	ENSG00000104164	mutation identified in 1 HPS9 patient	?Hermansky-pudlak syndrome 9, 614171 (3), Autosomal recessive	Bloc1s6 (MGI:1927580)
chr15	45631147	45691293	15q21.1	15q21.1	617658	SQOR, SQRDL	Sulfide quinone oxidoreductase	SQOR	58472	ENSG00000137767			Sqor (MGI:1929899)
chr15	47184097	47774222	15q21.1	15q21.1	609295	SEMA6D, KIAA1479	Semaphorin 6D	SEMA6D	80031	ENSG00000137872			Sema6d (MGI:2387661)
chr15	48120971	48142391	15q21.1	15q21.1	609802	SLC24A5, NCKX5, SHEP4, OCA6	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 5	SLC24A5	283652	ENSG00000188467		Albinism, oculocutaneous, type VI, 113750 (3), Autosomal recessive; [Skin/hair/eye pigmentation 4, fair/dark skin], 113750 (3), Autosomal recessive	Slc24a5 (MGI:2677271)
chr15	48206300	48304077	15q15-q21.1	15q21.1	600839	SLC12A1, NKCC2	Solute carrier family 12 (sodium/potassium/chloride transporters), member 1	SLC12A1	6557	ENSG00000074803		Bartter syndrome, type 1, 601678 (3), Autosomal recessive	Slc12a1 (MGI:103150)
chr15	48329990	48343372	15q15-q21.1	15q21.1	601266	DUT	dUTP pyrophosphatase	DUT	1854	ENSG00000128951			Dut (MGI:1346051)
chr15	48408305	48645787	15q21.1	15q21.1	134797	FBN1, MFS1, WMS2, SSKS, GPHYSD2, ACMICD, ECTOL1, MFLS	Fibrillin-1	FBN1	2200	ENSG00000166147		Acromicric dysplasia, 102370 (3), Autosomal dominant; Ectopia lentis, familial, 129600 (3), Autosomal dominant; Geleophysic dysplasia 2, 614185 (3), Autosomal dominant; MASS syndrome, 604308 (3); Marfan lipodystrophy syndrome, 616914 (3), Autosomal dominant; Marfan syndrome, 154700 (3), Autosomal dominant; Stiff skin syndrome, 184900 (3), Autosomal dominant; Weill-Marchesani syndrome 2, dominant, 608328 (3), Autosomal dominant	Fbn1 (MGI:95489)
chr15	48662533	48811903	15q21.1	15q21.1	613529	CEP152, KIAA0912, MCPH9, SCKL5	Centrosomal protein, 152kD	CEP152	22995	ENSG00000103995		Microcephaly 9, primary, autosomal recessive, 614852 (3), Autosomal recessive; Seckel syndrome 5, 613823 (3), Autosomal recessive	Cep152 (MGI:2139083)
chr15	48823736	48963443	15q21.1	15q21.1	617372	SHC4, RALP, SHCD	SHC transforming protein 4	SHC4	399694	ENSG00000185634			Shc4 (MGI:2655364)
chr15	48878092	48880182	15q21.1-q21.2	15q21.1	605894	EID1, CRI1, C15orf3	EP300-interacting inhibitor of differentiation 1	EID1	23741	ENSG00000255302			Eid1 (MGI:1889651)
chr15	48988637	49046562	15q21.1	15q21.1	615756	SECISBP2L, SBP2L, KIAA0256	Selenocysteine insertion sequence-binding protein 2-like	SECISBP2L	9728	ENSG00000138593			Secisbp2l (MGI:1917604)
chr15	49125273	49155656	15q21.2	15q21.1	604508	TRIP15, SGN2, COPS2	Thyroid hormone receptor interactor-15	COPS2	9318	ENSG00000166200			
chr15	49155758	49367882	Chr.15	15q21.1-q21.2	137028	GALK2, GK2	Galactokinase-2	GALK2	2585	ENSG00000156958			Galk2 (MGI:1917226)
chr15	49423177	49487325	15q15-q21.1	15q21.2	148180	FGF7	Fibroblast growth factor-7 (keratinocyte growth factor)	FGF7	2252	ENSG00000140285			Fgf7 (MGI:95521)
chr15	50182195	50236391	15q21.2	15q21.2	603247	SLC27A2, FACVL1, VLACS	Solute carrier family 27 (fatty acid transporter), member 2 (fatty acid CoA ligase, very long-chain 1)	SLC27A2	11001	ENSG00000140284			Slc27a2 (MGI:1347099)
chr15	50241944	50266048	15q21-q22	15q21.2	142704	HDC	Histidine decarboxylase	HDC	3067	ENSG00000140287		{Gilles de la Tourette syndrome, susceptibility to}, 137580 (3), Autosomal dominant	Hdc (MGI:96062)
chr15	50277191	50359305	15q21.2	15q21.2	600610	GABPB, BABPB2, GABPB1, E4TF1B, NRF2B1	GA-binding protein transcription factor, beta subunit	GABPB1	2553	ENSG00000104064			Gabpb1 (MGI:95611)
chr15	50424358	50501082	15q21.2	15q21.2	603158	USP8, HUMORF8, PITA4	Ubiquitin-specific protease 8	USP8	9101	ENSG00000138592		Pituitary adenoma 4, ACTH-secreting, somatic, 219090 (3)	Usp8 (MGI:1934029)
chr15	50557157	50686814	15q21	15q21.2	605692	TRPM7, LTRPC7, CHAK, ALSPDC	Transient receptor potential cation channel, subfamily M, member 7	TRPM7	54822	ENSG00000092439		{Amyotrophic lateral sclerosis-parkinsonism/dementia complex, susceptibility to}, 105500 (3), Autosomal dominant	Trpm7 (MGI:1929996)
chr15	50702265	50765712	15q15.3	15q21.2	608238	SPPL2A, IMP3	Signal peptide peptidase-like 2A	SPPL2A	84888	ENSG00000138600			Sppl2a (MGI:1913802)
chr15	50908568	51005899	15q21.2	15q21.2	607244	AP4E1, SPG51, CPSQ4, STUT1	Adaptor-related protein complex 4, epsilon-1 subunit	AP4E1	23431	ENSG00000081014		Spastic paraplegia 51, autosomal recessive, 613744 (3), Autosomal recessive; Stuttering, familial persistent, 1, 184450 (3), Autosomal dominant	Ap4e1 (MGI:1336993)
chr15	51056595	51105275	15q21.2	15q21.2	616438	TNFAIP8L3, TIPE3	Tumor necrosis factor-alpha-induced protein 8-like 3	TNFAIP8L3	388121	ENSG00000183578			Tnfaip8l3 (MGI:2685363)
chr15	51208056	51338597	15q21.1	15q21.2	107910	CYP19A1, CYP19, ARO	Cytochrome P450, family 19, subfamily A, polypeptide 1 (aromatization of androgens)	CYP19A1	1588	ENSG00000137869	close to CYP11 in mouse	Aromatase deficiency, 613546 (3); Aromatase excess syndrome, 139300 (3), Autosomal dominant	Cyp19a1 (MGI:88587)
chr15	51341503	51413364	15q21.2	15q21.2	608603	GLDN, CRGL2, LCCS11	Gliomedin	GLDN	342035	ENSG00000186417		Lethal congenital contracture syndrome 11, 617194 (3), Autosomal recessive	Gldn (MGI:2388361)
chr15	51447723	51622832	15q21.2	15q21.2	612186	DMXL2, RC3, KIAA0856, PEPNS, DFNA71	DMX-like 2	DMXL2	23312	ENSG00000104093	mutation identified in 1 PEPNS family and 1 DFNA71 family	?Deafness, autosomal dominant 71, 617605 (3), Autosomal dominant; ?Polyendocrine-polyneuropathy syndrome, 616113 (3), Autosomal recessive	Dmxl2 (MGI:2444630)
chr15	51681352	51721025	15q21.3	15q21.2	611796	SCG3	Secretogranin III	SCG3	29106	ENSG00000104112			Scg3 (MGI:103032)
chr15	51751560	51816362	15q21.1-q21.2	15q21.2	602928	TMOD2	Tropomodulin 2, neuronal	TMOD2	29767	ENSG00000128872			Tmod2 (MGI:1355335)
chr15	51829627	51912137	15q21.1-q21.2	15q21.2	605112	TMOD3	Tropomodulin 3	TMOD3	29766	ENSG00000138594			Tmod3 (MGI:1355315)
chr15	51938023	51971800	15q15.3	15q21.2	610507	LEO1, RDL	LEO1 RNA polymerase II associated factor, S. cerevisiae, homolog of	LEO1	123169	ENSG00000166477			Leo1 (MGI:2685031)
chr15	52109262	52112774	15q21	15q21.2	606910	BCL2L10	BCL2-like 10	BCL2L10	10017	ENSG00000137875			Bcl2l10 (MGI:1330841)
chr15	52120925	52191367	15q21.2	15q21.2	604447	GNB5, GB5, IDDCA, LADCI	Guanine nucleotide-binding protein, beta-5	GNB5	10681	ENSG00000069966		Intellectual developmental disorder with cardiac arrhythmia, 617173 (3), Autosomal recessive; Language delay and ADHD/cognitive impairment with or without cardiac arrhythmia, 617182 (3), Autosomal recessive	Gnb5 (MGI:101848)
chr15	52192317	52295797	15q21	15q21.2	610022	MYO5C	Myosin Vc	MYO5C	55930	ENSG00000128833			Myo5c (MGI:2442485)
chr15	52307282	52529049	15q21	15q21.2	160777	MYO5A, MYH12, GS1	Myosin Va	MYO5A	4644	ENSG00000197535		Griscelli syndrome, type 1, 214450 (3), Autosomal recessive	Myo5a (MGI:105976)
chr15	52547044	52569445	Chr.15	15q21.2	605487	ARPP19, ARPP16	cAMP-regulated phosphoprotein, 19kD	ARPP19	10776	ENSG00000128989			Arpp19 (MGI:1891691)
chr15	52755052	52790263	15q21.1-q21.2	15q21.3	604164	ONECUT1, HNF6A, HNF6	One cut domain, family member 1 (hepatocyte nuclear factor 6-alpha)	ONECUT1	3175	ENSG00000169856			Onecut1 (MGI:1196423)
chr15	53513740	53762877	15q21.3	15q21.3	613214	WDR72, AI2A3	WD repeat-containing protein 72	WDR72	256764	ENSG00000166415		Amelogenesis imperfecta, type IIA3, 613211 (3), Autosomal recessive	Wdr72 (MGI:3583957)
chr15	53837572	54628607	15q21.3	15q21.3	614568	UNC13C	Unc13, C. elegans, homolog of, C	UNC13C	440279	ENSG00000137766			Unc13c (MGI:2149021)
chr15	55181313	55197032	15q21.3	15q21.3	613262	RSL24D1, RLP24	Ribosomal protein L24 domain-containing protein 1	RSL24D1	51187	ENSG00000137876			Rsl24d1 (MGI:2681840)
chr15	55202965	55291337	15q21	15q21.3	603868	RAB27A, RAM, GS2	Ras-associated protein RAB27A	RAB27A	5873	ENSG00000069974		Griscelli syndrome, type 2, 607624 (3), Autosomal recessive	Rab27a (MGI:1861441)
chr15	55318934	55355647	15q21-q22	15q21.3	604122	PIGB	Phosphatidylinositol glycan, class B	PIGB	9488	ENSG00000069943			Pigb (MGI:1891825)
chr15	55355222	55408509	15q21.3	15q21.3	611326	CCPG1, KIAA1254, CPR8	Cell cycle progression 1	CCPG1	9236	ENSG00000260916			Ccpg1 (MGI:1196419)
chr15	55417754	55508233	15q21	15q21.3	608706	DNAAF4, DYX1C1, DYXC1, DYX1, CILD25	Dynein, axonemal, assembly factor 4	DNAAF4	161582	ENSG00000256061	not confirmed by some studies	Ciliary dyskinesia, primary, 25, 615482 (3), Autosomal recessive; {Dyslexia, susceptibility to, 1}, 127700 (3), Autosomal dominant	Dyx1c1 (MGI:1914935)
chr15	55611539	55743123	15q21.3	15q21.3	613261	PRTG	Protogenin, chicken, homolog of	PRTG	283659	ENSG00000166450			Prtg (MGI:2444710)
chr15	55826916	55993745	15q	15q21.3	602278	NEDD4	Neural precursor cell expressed, developmentally downregulated-4	NEDD4	4734	ENSG00000069869			
chr15	56090532	56247653	15q21.3	15q21.3	612660	RFX7, RFXDC2	Regulatory factor X, 7	RFX7	64864	ENSG00000181827			Rfx7 (MGI:2442675)
chr15	56428730	56465136	15q21.3	15q21.3	610766	MNS1, FLJ11222	Meiosis-specific nuclear structural protein 1	MNS1	55329	ENSG00000138587			Mns1 (MGI:107933)
chr15	56918089	57292594	15q21	15q21.3	600480	TCF12, HTF4, CRS3	Transcription factor-12 (HTF4, helix-loop-helix transcription factors-4)	TCF12	6938	ENSG00000140262		Craniosynostosis 3, 615314 (3), Autosomal dominant	Tcf12 (MGI:101877)
chr15	57376457	57550726	15q21.2-q21.3	15q21.3	607856	CGNL1, FLJ14957, KIAA1749	Cingulin-like 1	CGNL1	84952	ENSG00000128849			Cgnl1 (MGI:1915428)
chr15	57591903	57685363	15q21.3-q22.1	15q21.3	614071	GUP, GCOM1, MYOZAP	GRINL1A complex locus upstream gene	MYZAP	100820829	ENSG00000263155			Myzap (MGI:2142908)
chr15	57706520	57717556	15q22.1	15q21.3	606485	POLR2M, GDOWN, GRINL1A	Polymerase II, RNA, subunit M	POLR2M	81488	ENSG00000255529			Polr2m (MGI:107282)
chr15	57953423	58065922	15q21.3	15q21.3	603687	ALDH1A2, RALDH2	Aldehyde dehydrogenase 1 family, member A2 (retinaldehyde dehydrogenase 2)	ALDH1A2	8854	ENSG00000128918			Aldh1a2 (MGI:107928)
chr15	58138168	58185910	15q22	15q21.3	602914	AQP9	Aquaporin 9	AQP9	366	ENSG00000103569			Aqp9 (MGI:1891066)
chr15	58410456	58568951	15q21.3	15q21.3	151670	LIPC, HL, LIPH, HDLCQ12	Lipase C, hepatic	LIPC	3990	ENSG00000166035		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant; Hepatic lipase deficiency, 614025 (3), Autosomal recessive; [High density lipoprotein cholesterol level QTL 12], 612797 (3)	Lipc (MGI:96216)
chr15	58595203	58749977	15q21.3	15q21.3	602192	ADAM10, MADM, RAK, AD18	A disintegrin and metalloprotease domain 10	ADAM10	102	ENSG00000137845		{Alzheimer disease 18, susceptibility to}, 615590 (3); Reticulate acropigmentation of Kitamura, 615537 (3), Autosomal dominant	Adam10 (MGI:109548)
chr15	58800000	78000000	15q22-q24		611274	GLC1N	Glaucoma 1, open angle, N	GLC1N	777645		max lod at D15S125	Glaucoma 1, open angle, N, 611274 (2)	
chr15	58800000	72400000	15q22-q23		612632	USH1H	Usher syndrome, type 1H	USH1H	100271837		max lod at D15S980	Usher syndrome, type 1H, 612632 (2)	
chr15	58987587	59097418	15q22.1-q22.2	15q22.1-q22.2	605840	RNF111	Ring finger protein 111	RNF111	54778	ENSG00000157450			Rnf111 (MGI:1934919)
chr15	59105084	59125044	15q22.2	15q22.2	602755	CCNB2	Cyclin B2	CCNB2	9133	ENSG00000157456			Ccnb2 (MGI:88311)
chr15	59135968	59372871	15q21-q22	15q22.2	601479	MYO1E, MYO1C, FSGS6	Myosin IE	MYO1E	4643	ENSG00000157483		Glomerulosclerosis, focal segmental, 6, 614131 (3), Autosomal recessive	Myo1e (MGI:106621)
chr15	59611782	59620010	15q21.3	15q22.2	606836	GCNT3	Glucosaminyl (N-acetyl) transferase 3, mucin-type	GCNT3	9245	ENSG00000140297			Gcnt3 (MGI:1919327)
chr15	59638061	59657540	15q22.2	15q22.2	600519	GTF2A2, TF2A2	General transcription factor IIA, gamma subunit	GTF2A2	2958	ENSG00000140307	pseudogenes on chr. 1, 8, 9		Gtf2a2 (MGI:1933289)
chr15	59659145	59689533	15q22.2	15q22.2	603292	BNIP2, NIP2	BCL2/adenovirus E1B 19kD protein-interacting protein 2	BNIP2	663	ENSG00000140299			Bnip2 (MGI:109327)
chr15	60347150	60398024	15q21-q22	15q22.2	151740	ANXA2, ANX2L4, LPC2D, LIP2	Annexin A2 (lipocortin I)	ANXA2	302	ENSG00000182718	pseudogenes ANX2P1 on 4q21-q31; ANX2P2 on 9p13; ANX2P3 on 10q24-q22		Anxa2 (MGI:88246)
chr15	60419608	60479159	15q21.3	15q22.2	610835	NARG2	NMDA receptor-regulated 2	ICE2	79664	ENSG00000128915	pseudogenes on chr.4 and chr.3		Ice2 (MGI:2135947)
chr15	60488283	61229302	15q21-q22	15q22.2	600825	RORA	RAR-related orphan receptor A	RORA	6095	ENSG00000069667			Rora (MGI:104661)
chr15	61852388	62060464	15q22.1	15q22.2	608879	VPS13C, KIAA1421, PARK23	Vacuolar protein sorting 13, yeast, homolog of, C	VPS13C	54832	ENSG00000129003		Parkinson disease 23, autosomal recessive, early onset, 616840 (3), Autosomal recessive	Vps13c (MGI:2444207)
chr15	62066976	62070916	15q21.3	15q22.2	610343	C2CD4A, NLF1	C2 calcium-dependent domain containing 4A	C2CD4A	145741	ENSG00000198535			C2cd4a (MGI:3645763)
chr15	62163534	62165731	15q21.3	15q22.2	610344	C2CD4B, NLF2	C2 calcium-dependent domain containing 4B	C2CD4B	388125	ENSG00000205502			C2cd4b (MGI:1922947)
chr15	62390522	62844630	15q22.2	15q22.2	607349	TLN2, KIAA0320	Talin 2	TLN2	83660	ENSG00000171914			Tln2 (MGI:1917799)
chr15	62823956	62824040	15q22.2	15q22.2	615845	MIR190A	Micro RNA 190A	MIR190A	406965				
chr15	63042638	63071914	15q22.1	15q22.2	191010	TPM1, CMH3, CMD1Y , LVNC9	Tropomyosin 1, alpha	TPM1	7168	ENSG00000140416		Cardiomyopathy, dilated, 1Y, 611878 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 3, 115196 (3), Autosomal dominant; Left ventricular noncompaction 9, 611878 (3), Autosomal dominant	
chr15	63121799	63142064	15q22.1	15q22.2	608440	LACTB	Lactamase, beta	LACTB	114294	ENSG00000103642			Lactb (MGI:1933395)
chr15	63153339	63157541	15q22.2	15q22.2	612055	RPS27L	Ribosomal protein S27-like	RPS27L	51065	ENSG00000185088			Rps27l (MGI:1915191)
chr15	63189528	63267775	15q22.2	15q22.2	613532	RAB8B	Ras-associated protein RAB8B	RAB8B	51762	ENSG00000166128			Rab8b (MGI:2442982)
chr15	63277549	63309125	15q22.2	15q22.2	607630	APH1B	Anterior pharynx defective 1, C. elegans, homolog of, B	APH1B	83464	ENSG00000138613			Aph1b (MGI:3522097)
chr15	63321377	63382165	15q22	15q22.2	603263	CA12	Carbonic anhydrase XII	CA12	771	ENSG00000074410		Hyperchlorhidrosis, isolated, 143860 (3), Autosomal recessive	Car12 (MGI:1923709)
chr15	63504510	63594639	15q22.3	15q22.31	604728	USP3	Ubiquitin-specific protease 3	USP3	9960	ENSG00000140455			Usp3 (MGI:2152450)
chr15	63594793	63603431	15q22.1	15q22.31	609088	FBXL22, FBL22	F-box and leucine-rich repeat protein 22	FBXL22	283807	ENSG00000197361			
chr15	63608617	63833947	15q22.31	15q22.31	605109	HERC1, MDFPMR	HECT domain and RCC1-like domain 1	HERC1	8925	ENSG00000103657		Macrocephaly, dysmorphic facies, and psychomotor retardation, 617011 (3), Autosomal recessive	Herc1 (MGI:2384589)
chr15	63907035	64046469	15q22.31	15q22.31	616567	DAPK2, DRP1	Death-associated protein kinase 2	DAPK2	23604	ENSG00000035664			Dapk2 (MGI:1341297)
chr15	64094065	64144233	15q22.3	15q22.31	601272	SNX1, SNX1A	Sorting nexin 1	SNX1	6642	ENSG00000028528			Snx1 (MGI:1928395)
chr15	64155814	64163154	15q21-q22	15q22.31	123841	PPIB, CYPB, OI9	Peptidyl-prolyl isomerase B	PPIB	5479	ENSG00000166794		Osteogenesis imperfecta, type IX, 259440 (3), Autosomal recessive	Ppib (MGI:97750)
chr15	64165516	64356258	15q22.1-q22.31	15q22.31	606274	CSNK1G1	Casein kinase I, gamma-1	CSNK1G1	53944	ENSG00000169118			Csnk1g1 (MGI:2660884)
chr15	64364993	64387686	15q22.1	15q22.31	610696	PAF, OEATC1, KIAA0101	PCNA-associated factor, 15kD	PCLAF	9768	ENSG00000166803			Pclaf (MGI:1915276)
chr15	64387803	64455302	15q22.31	15q22.31	604501	TRIP4, ASC1, SMABF1, MDCDC	Thyroid hormone receptor interactor 4	TRIP4	9325	ENSG00000103671	mutation identified in 1 MDCDC family	?Muscular dystrophy, congenital, Davignon-Chauveau type, 617066 (3), Autosomal recessive; Spinal muscular atrophy with congenital bone fractures 1, 616866 (3), Autosomal recessive	Trip4 (MGI:1928469)
chr15	64460349	64686067	15q22.31	15q22.31	617474	ZNF609, KIAA0295	Zinc finger ptoein 609	ZNF609	23060	ENSG00000180357			Zfp609 (MGI:2674092)
chr15	64687573	64703280	15q22.31	15q22.31	604152	OAZ2	Ornithine decarboxylase antizyme 2	OAZ2	4947	ENSG00000180304			Oaz2 (MGI:109492)
chr15	64815629	64827172	15q22.31	15q22.31	610953	PIF1, PIF	Pif1, S. cerevisiae, homolog of	PIF1	80119	ENSG00000140451			Pif1 (MGI:2143057)
chr15	64963020	64989945	15q21-q22	15q22.31	608181	ACP33, MAST, SPG21	Acidic cluster protein, 33kD, (maspardin)	SPG21	51324	ENSG00000090487		Mast syndrome, 248900 (3), Autosomal recessive	Spg21 (MGI:106403)
chr15	65001511	65029638	15q22.31	15q22.31	611766	MTFMT, COXPD15	Mitochondrial methionyl-tRNA formyltransferase	MTFMT	123263	ENSG00000103707		Combined oxidative phosphorylation deficiency 15, 614947 (3), Autosomal recessive	Mtfmt (MGI:1916856)
chr15	65045369	65053396	15q21	15q22.31	612085	OSTB	Organic solute transporter, beta	SLC51B	123264	ENSG00000186198			Slc51b (MGI:3582052)
chr15	65076815	65079937	15q22.31	15q22.31	613727	KBTBD13, NEM6	Kelch repeat and BTB/POZ domains-containing protein 13	KBTBD13	390594	ENSG00000234438		Nemaline myopathy 6, autosomal dominant, 609273 (3), Autosomal dominant	Kbtbd13 (MGI:1921742)
chr15	65117378	65133835	15q22.31	15q22.31	608138	PDCD7	Programmed cell death 7	PDCD7	10081	ENSG00000090470			Pdcd7 (MGI:1859170)
chr15	65148218	65185419	15q22.31	15q22.31	615611	CLPX	Caseinolytic mitochondrial matrix peptidase chaperone subunit	CLPX	10845	ENSG00000166855			Clpx (MGI:1346017)
chr15	65195998	65213141	15q22	15q22.31	603489	CILP	Cartilage intermediate layer protein	CILP	8483			{Lumbar disc disease, susceptibility to}, 603932 (3)	Cilp (MGI:2444507)
chr15	65296050	65296166	15q22.31	15q22.31	180691	RNU5A, RNU5	RNA, U5A small nuclear	RNU5A-1	26831				
chr15	65327126	65378039	15q22.3-q23	15q22.31	604184	PUNC	Putative neuronal cell adhesion molecule	IGDCC3	9543	ENSG00000174498			Igdcc3 (MGI:1202390)
chr15	65381483	65423071	15q22.31	15q22.31	616810	IGDCC4, NOPE, KIAA1628	Immunoglobulin superfamily, DCC subclass, member 4	IGDCC4	57722	ENSG00000103742			Igdcc4 (MGI:1858497)
chr15	65442462	65517712	15q22	15q22.31	606819	DPP8	Dipeptidyl peptidase 8	DPP8	54878	ENSG00000074603			Dpp8 (MGI:1921638)
chr15	65530488	65578354	15q22.31	15q22.31	615940	PTPLAD1, BIND1, HACD3	Protein tyrosine phosphatase-like A domain-containing protein 1	HACD3	51495	ENSG00000074696			Hacd3 (MGI:1889341)
chr15	65611312	65660994	15q22	15q22.31	603617	SLC24A1, NCKX1, CSNB1D	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 1	SLC24A1	9187	ENSG00000074621		Night blindness, congenital stationary (complete), 1D, autosomal recessive, 613830 (3), Autosomal recessive	Slc24a1 (MGI:2384871)
chr15	65655233	65792292	15q22.31	15q22.31	600382	DENND4A	DENN/MADD domain containing 4A	DENND4A	10260	ENSG00000174485			Dennd4a (MGI:2142979)
chr15	65869458	65891990	15q21.3-q22.31	15q22.31	605570	RAB11A	Ras family, member RAB11A	RAB11A	8766	ENSG00000103769			Rab11a (MGI:1858202)
chr15	65889716	66253736	15q22.31	15q22.31	612454	MEGF11, KIAA1781	Multiple epidermal growth factor-like domains 11	MEGF11	84465	ENSG00000157890			Megf11 (MGI:1920951)
chr15	66293256	66333897	15q22.31	15q22.31	614183	DIS3L, DIS3L1, KIAA1955	Dis3 mitotic control, S. cerevisiae, homolog-like	DIS3L	115752	ENSG00000166938			Dis3l (MGI:2143272)
chr15	66334973	66387272	15q22.3	15q22.31	610716	TIPIN	Timeless-interacting protein	TIPIN	54962	ENSG00000075131			Tipin (MGI:1921571)
chr15	66386872	66491543	15q21	15q22.31	176872	MAP2K1, PRKMK1, MKK1, MEK1, CFC3	Mitogen-activated protein kinase kinase 1	MAP2K1	5604	ENSG00000169032	pseudogene on 8p21	Cardiofaciocutaneous syndrome 3, 615279 (3)	Map2k1 (MGI:1346866)
chr15	66489747	66497814	15q22.31	15q22.31	605979	SNAPC5, SNAP19	Small nuclear RNA-activating protein complex, polypeptide 5	SNAPC5	10302	ENSG00000174446			Snapc5 (MGI:1914282)
chr15	66499314	66504854	15q	15q22.31	180479	RPL4	Ribosomal protein L4	RPL4	6124	ENSG00000174444			Rpl4 (MGI:1915141)
chr15	66505082	66549484	15q22.3	15q22.31	609984	ZWILCH	Zwilch, Drosophila, homolog of	ZWILCH	55055	ENSG00000174442			Zwilch (MGI:1915264)
chr15	66547467	66565978	15q22.31	15q22.31	617060	LCTL, KLG, KLPH	Lactase-like protein	LCTL	197021	ENSG00000188501			Lctl (MGI:2183549)
chr15	66702109	66781999	15q21-q22	15q22.31	602931	SMAD6, MADH6, AOVD2	Mothers against decapentaplegic, Drosophila, homolog of, 6	SMAD6	4091	ENSG00000137834		Aortic valve disease 2, 614823 (3), Autosomal dominant; {Craniosynostosis 7, susceptibility to}, 617439 (3), Autosomal dominant	Smad6 (MGI:1336883)
chr15	66900000	67000000	15q22.32		612579	STQTL16	Stature quantitative trait locus 16		100270802		associated with rs8038652	{Stature QTL 16}, 612579 (2)	
chr15	67065856	67195194	15q22.3	15q22.33	603109	SMAD3, MADH3, LDS3	Mothers against decapentaplegic, Drosophila, homolog of, 3	SMAD3	4088	ENSG00000166949		Loeys-Dietz syndrome 3, 613795 (3), Autosomal dominant	Smad3 (MGI:1201674)
chr15	67200000	101991189	15q23-q26.3		607248	GLM4	Glioma susceptibility 4		338030		max lod at D15S130	{Glioma susceptibility 4}, 607248 (2)	
chr15	67200674	67255197	15q22.33-q23	15q23	614888	AAGAB, p34, PPKP1A, PPKP1, KPPP1	Alpha- and gamma-adaptin-binding protein	AAGAB	79719	ENSG00000103591		Keratoderma, palmoplantar, punctate type IA, 148600 (3), Autosomal dominant	Aagab (MGI:1914189)
chr15	67254771	67501803	15q22.31	15q23	612523	IQCH, NYDSP5	IQ motif-containing protein H	IQCH	64799	ENSG00000103599			Iqch (MGI:1925500)
chr15	67542682	67807116	15q23	15q23	602520	MAP2K5, PRKMK5, MEK5, MAPKK5	Mitogen-activated protein kinase kinase 5	MAP2K5	5607	ENSG00000137764			Map2k5 (MGI:1346345)
chr15	67819703	67834560	15q23	15q23	611273	LBXCOR1, CORL1	LBX1 corepressor 1, mouse, homolog of	SKOR1	390598	ENSG00000188779			
chr15	67839939	67840044	15q23	15q23	180692	RNU6-1, RNU6A, RNU6	RNA, U6 small nuclear 1	RNU6-1	26827				
chr15	68054178	68191463	15q22	15q23	603566	PIAS1, DDXBP1, GBP	protein inhibitor of activated STAT, 1	PIAS1	8554	ENSG00000033800			Pias1 (MGI:1913125)
chr15	68206991	68229741	15q21-q23	15q23	606725	CLN6, CLN4A	CLN6 gene	CLN6	54982	ENSG00000128973		Ceroid lipofuscinosis, neuronal, 6, 601780 (3), Autosomal recessive; Ceroid lipofuscinosis, neuronal, Kufs type, adult onset, 204300 (3), Autosomal recessive	Cln6 (MGI:2159324)
chr15	68277802	68295864	15q23	15q23	613539	FEM1B, KIAA0396	Fem1, C. elegans, homolog of, B	FEM1B	10116	ENSG00000169018			Fem1b (MGI:1335087)
chr15	68297432	68432311	15q23	15q23	604789	ITGA11	Integrin, alpha-11	ITGA11	22801	ENSG00000137809			Itga11 (MGI:2442114)
chr15	68518372	68727805	15q23	15q23	605002	CORO2B, CLIPINC	Coronin 2B	CORO2B	10391	ENSG00000103647			Coro2b (MGI:2444283)
chr15	68778534	68820921	15q22.3-q23	15q23	600832	ANP32A, PHAP1	Acidic (leucine-rich) nuclear phosphoprotein 32 family, member A	ANP32A	8125	ENSG00000140350			
chr15	68930499	69057160	15q23	15q23	606572	NOX5	NADPH oxidase 5	NOX5	79400	ENSG00000255346			
chr15	68930499	68946810	15q22	15q23	609399	SPESP1	Sperm equatorial segment protein 1	SPESP1	246777	ENSG00000258484			Spesp1 (MGI:1913962)
chr15	69080849	69095823	15q23	15q23	616492	EWSAT1, LINC00277	Ewing sarcoma-associated transcript 1, noncoding	EWSAT1	283673				
chr15	69160554	69272208	15q23	15q23	612134	GLCE, HSEPI, KIAA0836	Glucuronic acid epimerase	GLCE	26035	ENSG00000138604			Glce (MGI:2136405)
chr15	69284133	69407636	15q23	15q23	607781	PAQR5, MPRG	Progestin and ADIPOQ receptor family, member 5	PAQR5	54852	ENSG00000137819			Paqr5 (MGI:1921340)
chr15	69414245	69448426	15q23	15q23	605064	KIF23, KNSL5, MKLP1	Kinesin family member 23	KIF23	9493	ENSG00000137807			Kif23 (MGI:1919069)
chr15	69452819	69455544	Chr.15	15q23	180520	RPLP1	Ribosomal phosphoprotein, Large, P1	RPLP1	6176	ENSG00000137818			
chr15	69561719	69571439	15q23	15q23	616387	DRAIC	Downregulated RNA in androgen-independent cells, noncoding	DRAIC	145837				
chr15	69592199	69695749	15q23	15q23	616273	PCAT29	Prostate cancer-associated transcript 29, noncoding	PCAT29	104472713				
chr15	70047789	70098170	15q22	15q23	600190	TLE3, ESG	Transducin-like enhancer of split 3, homolog of Drosophila a E(spl)	TLE3	7090	ENSG00000140332			Tle3 (MGI:104634)
chr15	70654553	70778822	15q24	15q23	612516	UACA, NUCLING	Uveal autoantigen with coiled-coil domains and ankyrin repeats	UACA	55075	ENSG00000137831			Uaca (MGI:1919815)
chr15	70831523	70854264	15q23	15q23	611300	LARP6, ACHN	La ribonucleoprotein domain family, member 6	LARP6	55323	ENSG00000166173			Larp6 (MGI:1914807)
chr15	70881341	70892432	15q23	15q23	612538	THAP10	THAP domain-containing protein 10	THAP10	56906	ENSG00000129028			
chr15	71115615	71783382	15q23	15q23	614476	THSD4, ADAMTSL6	Thrombospondin type-1 domain-containing 4	THSD4	79875	ENSG00000187720			Thsd4 (MGI:2672033)
chr15	71810547	71818258	15q23	15q23	604485	NR2E3, PNR, ESCS, RP37	Nuclear receptor subfamily 2, group E, member 3	NR2E3	10002	ENSG00000278570	near BBS4	Enhanced S-cone syndrome, 268100 (3), Autosomal recessive; Retinitis pigmentosa 37, 611131 (3), Autosomal recessive, Autosomal dominant	Nr2e3 (MGI:1346317)
chr15	71822290	72118576	15q22-q23	15q23	604875	MYO9A	Myosin IXa	MYO9A	4649	ENSG00000066933			Myo9a (MGI:107735)
chr15	72114257	72143687	15q23	15q23	608659	SENP8, NEDP1, DEN1	Sentrin-specific protease family, member 8	SENP8	123228	ENSG00000166192			Senp8 (MGI:1918849)
chr15	72199028	72231623	15q22	15q23	179050	PKM, PKM2, PK3, THBP1	Pyruvate kinase, muscle	PKM	5315	ENSG00000067225			Pkm (MGI:97591)
chr15	72284726	72320183	15q24	15q23	612681	CELF6, BRUNOL6	CUGbp- and ELAV-like family, member 6	CELF6	60677	ENSG00000140488			
chr15	72343434	72376472	15q23-q24	15q23	606869	HEXA, TSD	Hexosaminidase A, alpha polypeptide	HEXA	3073	ENSG00000213614	on 15q+ in APL	GM2-gangliosidosis, several forms, 272800 (3), Autosomal recessive; [Hex A pseudodeficiency], 272800 (3), Autosomal recessive; Tay-Sachs disease, 272800 (3), Autosomal recessive	Hexa (MGI:96073)
chr15	72400000	88500000	15q24-q25		612274	CILD8	Ciliary dyskinesia, primary, 8		100190786		max lod at D15S154	Ciliary dyskinesia, primary, 8, 612274 (2)	
chr15	72400000	78000000	15q24		603204	ENFL2	Epilepsy, nocturnal frontal lobe, type 2		50971		some ENFL not on 20q or 15q	Epilepsy, nocturnal frontal lobe, type 2, 603204 (2), Autosomal dominant	
chr15	72400000	78000000	15q24		602685	MRST	Mental retardation, severe, with spasticity and tapetoretinal degeneration		8126			Mental retardation, severe, with spasticity and tapetoretinal degeneration, 602685 (2)	
chr15	72474325	72586554	15q24	15q24.1	605624	ARIH1, ARI, UBCH7BP	Ariadne, Drosophila, homolog of, 1	ARIH1	25820	ENSG00000166233			Arih1 (MGI:1344363)
chr15	72686178	72738475	15q22.3-q23	15q24.1	600374	BBS4	BBS4 gene	BBS4	585	ENSG00000140463		Bardet-Biedl syndrome 4, 615982 (3), Autosomal recessive	Bbs4 (MGI:2143311)
chr15	72751366	72783784	15q24.1	15q24.1	611861	ADPGK	ADP-dependent glucokinase	ADPGK	83440	ENSG00000159322			Adpgk (MGI:1919391)
chr15	73051714	73305205	15q22.3-q23	15q24.1	601907	NEO1, NGN	Neogenin, chicken, homolog of, 1	NEO1	4756	ENSG00000067141			Neo1 (MGI:1097159)
chr15	73319858	73369263	15q24-q25	15q24.1	605206	HCN4, SSS2	Hyperpolarization-activated cyclic nucleotide-gated potassium channel 4	HCN4	10021	ENSG00000138622		Brugada syndrome 8, 613123 (3); Sick sinus syndrome 2, 163800 (3), Autosomal dominant	Hcn4 (MGI:1298209)
chr15	73560002	73633411	15q24.1	15q24.1	612820	NPTN, SDFR1, GP55, NP55, GP65, NP65	Neuroplastin	NPTN	27020	ENSG00000156642			
chr15	73566937	73569542	15q24.1	15q24.1	615176	NPTNIT1	NPTN intronic transcript 1, noncoding	NPTN-IT1	101241892				
chr15	73683965	73714517	15q23-q24	15q24.1	605715	CD276, B7H3	CD276 molecule	CD276	80381	ENSG00000103855			Cd276 (MGI:2183926)
chr15	73735430	73753169	15q24.1	15q24.1	617128	C15orf59, INSYN1	Chromosome 15 open reading frame 59	C15orf59	388135	ENSG00000205363			6030419C18Rik (MGI:2442108)
chr15	73917467	73928247	15q24.1	15q24.1	616800	LOXL1AS1	LOXL1 antisense RNA 1	LOXL1-AS1	100287616				
chr15	73926457	73952140	15q24.1	15q24.1	153456	LOXL1, LOXL	Lysyl oxidase-like 1	LOXL1	4016	ENSG00000129038		{Exfoliation syndrome, susceptibility to}, 177650 (3), Autosomal dominant	Loxl1 (MGI:106096)
chr15	73983217	73994635	15q22	15q24.1	608326	STOML1, STORP	Stomatin-like protein 1	STOML1	9399	ENSG00000067221			Stoml1 (MGI:1916356)
chr15	73994672	74047818	15q22	15q24.1	102578	PML, MYL	Promyelocytic leukemia, inducer of	PML	5371	ENSG00000140464	fused with RARA in APL	Leukemia, acute promyelocytic, PML/RARA type (3)	Pml (MGI:104662)
chr15	74069856	74082549	15q22	15q24.1	610288	GOLGA6, GLP	Golgi autoantigen, golgin subfamily A, 6	GOLGA6A	342096	ENSG00000159289			
chr15	74100313	74141825	15q24.1	15q24.1	614179	ISLR2, LINX, KIAA1464	Immunoglobulin superfamily containing leucine-rich repeat 2	ISLR2	57611	ENSG00000167178			Islr2 (MGI:2444277)
chr15	74173745	74176870	15q23-q24	15q24.1	602059	ISLR	Immunoglobulin superfamily containing leucine-rich repeat	ISLR	3671	ENSG00000129009			Islr (MGI:1349645)
chr15	74179465	74212266	15q24.1	15q24.1	610745	STRA6, MCOPS9, MCOPCB8	Stimulated by retinoic acid 6, mouse, homolog of	STRA6	64220	ENSG00000137868		Microphthalmia, isolated, with coloboma 8, 601186 (3), Autosomal recessive; Microphthalmia, syndromic 9, 601186 (3), Autosomal recessive	Stra6 (MGI:107742)
chr15	74337761	74367739	15q24.1	15q24.1	118485	CYP11A1, P450SCC	Cytochrome P450, subfamily XIA, polypeptide 1 (cholesterol side chain cleavage enzyme)	CYP11A1	1583	ENSG00000140459		Adrenal insufficiency, congenital, with 46XY sex reversal, partial or complete, 613743 (3)	Cyp11a1 (MGI:88582)
chr15	74409283	74433958	15q24.1	15q24.1	607961	SEMA7A, SEMAL, SEMAK1, CDW108, JMH	Semaphorin 7A	SEMA7A	8482	ENSG00000138623		[Blood group, John-Milton-Hagen system], 614745 (3)	Sema7a (MGI:1306826)
chr15	74445976	74461828	15q22.3-q23	15q24.1	609748	UBL7	Ubiquitin-like 7	UBL7	84993	ENSG00000138629			Ubl7 (MGI:1916709)
chr15	74541176	74598130	15q24	15q24.1	612457	ARID3B, DRIL2, BDP	AT-rich interactive domain-containing protein 3B	ARID3B	10620	ENSG00000179361			Arid3b (MGI:1930768)
chr15	74598475	74645417	15q24	15q24.1	602990	CLK3	CDC-like kinase 3	CLK3	1198	ENSG00000179335			Clk3 (MGI:1098670)
chr15	74630557	74696433	15q24.1	15q24.1	609842	EDC3, YJDC, MRT50	Enhancer of mRNA decapping 3, S. cerevisiae, homolog of	EDC3	80153	ENSG00000179151	mutation identified in 1 MRT50 family	?Mental retardation, autosomal recessive 50, 616460 (3), Autosomal recessive	Edc3 (MGI:2142951)
chr15	74719541	74725609	15q24.1	15q24.1	108330	CYP1A1, CYP1	Cytochrome P450, subfamily I, aromatic compound-inducible, polypeptide 1	CYP1A1	1543	ENSG00000140465	head-to-head with CYP1A2		Cyp1a1 (MGI:88588)
chr15	74748842	74756599	15q24.1	15q24.1	124060	CYP1A2	Cytochrome P450, subfamily I, aromatic compound-inducible, polypeptide 2	CYP1A2	1544	ENSG00000140505	23.3kb from CYP1A1		Cyp1a2 (MGI:88589)
chr15	74782083	74803197	15q23-q25	15q24.1	124095	CSK	c-src tyrosine kinase	CSK	1445	ENSG00000103653			Csk (MGI:88537)
chr15	74836115	74843210	15q24.1	15q24.1	613472	ULK3	UNC51-like kinase 3	ULK3	25989	ENSG00000140474			Ulk3 (MGI:1918992)
chr15	74843729	74873378	Chr.15	15q24.1	606912	SCAMP2	Secretory carrier membrane protein 2	SCAMP2	10066	ENSG00000140497			Scamp2 (MGI:1346518)
chr15	74890004	74899456	15q22-qter	15q24.1	154550	MPI, PMI1, CDG1B	Mannosephosphate isomerase (phosphomannose isomerase 1)	MPI	4351	ENSG00000178802		Congenital disorder of glycosylation, type Ib, 602579 (3), Autosomal recessive	Mpi (MGI:97075)
chr15	74920274	74938153	15q25	15q24.2	603773	COX5A	Cytochrome C oxidase, subunit Va	COX5A	9377	ENSG00000178741	pseudogene on 14q22		Cox5a (MGI:88474)
chr15	74995534	75021494	15q23	15q24.2	613766	SCAMP5	Secretory carrier membrane protein 5	SCAMP5	192683	ENSG00000198794			Scamp5 (MGI:1928948)
chr15	75023543	75060179	15q24.2	15q24.2	609854	PPCDC	Phosphopantothenoylcysteine decarboxylase	PPCDC	60490	ENSG00000138621			Ppcdc (MGI:1914062)
chr15	75335995	75341926	15q24.2	15q24.2	616701	COMMD4	COMM domain-containing protein 4	COMMD4	54939	ENSG00000140365			Commd4 (MGI:1913449)
chr15	75346637	75355250	15q24.2	15q24.2	608844	NEIL1, NEI1, FPG1	Endonuclease VIII-like 1	NEIL1	79661	ENSG00000140398			Neil1 (MGI:1920024)
chr15	75354325	75368679	15q11-q13	15q24.2	154580	MAN2C1, MANA	Mannosidase, alpha, class 2C, member 1	MAN2C1	4123	ENSG00000140400			Man2c1 (MGI:1920994)
chr15	75369378	75455818	15q24	15q24.2	607776	SIN3A, WITKOS	Sin3, yeast, homolog of, A	SIN3A	25942	ENSG00000169375		Witteveen-Kolk syndrome, 613406 (3), Autosomal dominant	Sin3a (MGI:107157)
chr15	75467120	75579290	15q24.2	15q24.2	600768	PTPN9	Protein-tyrosine phosphatase, nonreceptor-type, 9	PTPN9	5780	ENSG00000169410			Ptpn9 (MGI:1928376)
chr15	75639084	75640322	15q24	15q24.2	612980	IMP3, MRPS4, BRMS2	Imp3, S. cerevisiae, homolog of	IMP3	55272	ENSG00000177971			Imp3 (MGI:1916119)
chr15	75674321	75712847	15q24.2	15q24.2	601172	CSPG4, MCSPG, MSK16, NG2	Chondroitin sulfate proteoglycan	CSPG4	1464	ENSG00000173546			Cspg4 (MGI:2153093)
chr15	75843285	75901046	15q23	15q24.2	612501	UBE2Q2, LOC92912	Ubiquitin-conjugating enzyme E2Q 2	UBE2Q2	92912	ENSG00000140367			Ube2q2 (MGI:2388672)
chr15	75903858	75935267	15q23	15q24.2	609096	FBXO22, FBX22	F-box only protein 22	FBXO22	26263	ENSG00000167196			Fbxo22 (MGI:1926014)
chr15	75933218	76069829	15q24.1	15q24.2	610894	NRG4, HRG4	Neuregulin 4	NRG4	145957	ENSG00000169752			Nrg4 (MGI:1933833)
chr15	76216227	76311468	15q23-q25	15q24.2-q24.3	608053	ETFA, GA2, MADD	Electron transfer flavoprotein, alpha polypeptide	ETFA	2108	ENSG00000140374		Glutaric acidemia IIA, 231680 (3), Autosomal recessive	Etfa (MGI:106092)
chr15	76348184	76905456	15q24	15q24.3	611611	SCAPER, KIAA1454	S-phase cyclin A-associated protein in the endoplasmic reticulum	SCAPER	49855	ENSG00000140386			Scaper (MGI:1925976)
chr15	76931620	76950259	15q23	15q24.3	602584	RCN2, ERC55	Reticulocalbin 2, EF-hand calcium binding domain (endoplasmic reticulum calcium-binding protein, 55kD)	RCN2	5955	ENSG00000117906			Rcn2 (MGI:1349765)
chr15	76994679	77037474	15q24-q25.1	15q24.3	606347	PSTPIP1, PSTPIP, CD2BP1, PAPAS	Proline-serine-threonine phosphatase-interacting protein 1	PSTPIP1	9051	ENSG00000140368		Pyogenic sterile arthritis, pyoderma gangrenosum, and acne, 604416 (3), Autosomal dominant	Pstpip1 (MGI:1321396)
chr15	77044016	77071227	15q24.3	15q24.3	613134	TSPAN3	Tetraspanin 3	TSPAN3	10099	ENSG00000140391			Tspan3 (MGI:1928098)
chr15	77100828	77420698	15q24.3	15q24.3	614248	PEAK1, KIAA2002	Pseudopodium-enriched atypical kinase 1	PEAK1	79834	ENSG00000173517			Peak1 (MGI:2442366)
chr15	77420650	77519898	15q24	15q24.3	605534	HMG20A	High mobility group protein 20A	HMG20A	10363	ENSG00000140382			Hmg20a (MGI:1914117)
chr15	77613023	77820899	15q24	15q24.3	609791	LRRN6A, LERN1, LINGO1	Leucine-rich repeat protein, neuronal, 6A	LINGO1	84894	ENSG00000169783			Lingo1 (MGI:1915522)
chr15	78000000	88500000	15q25		614294	DEL15q25, C15DELq25	Chromosome 15q25 deletion syndrome				chr15:82,889,423-83,552,890, NCBI36	Chromosome 15q25 deletion syndrome, 614294 (4), Autosomal dominant	
chr15	78000000	101991189	15q25-q26		606451	DFNA30	Deafness, autosomal dominant 30	DFNA30	23719			Deafness, autosomal dominant 30, 606451 (2), Autosomal dominant	
chr15	78000000	93800000	15q25.1-q26.1		607728	POROK4, DSAP2	Porokeratosis 4, disseminated superficial actinic		353147		between D15S1023 and D15S1030	Porokeratosis 4, disseminated superficial actinic, 607728 (2)	
chr15	78104605	78131975	15q24	15q25.1	605564	CIB2, KIP2	Calcium- and integrin-binding protein 2	CIB2	10518	ENSG00000136425		Deafness, autosomal recessive 48, 609439 (3), Autosomal recessive; Usher syndrome, type IJ, 614869 (3), Autosomal recessive	Cib2 (MGI:1929293)
chr15	78149361	78170541	15q25.1-q25.2	15q25.1	601149	IDH3A	Isocitrate dehydrogenase 3 (NAD+) alpha	IDH3A	3419	ENSG00000166411			Idh3a (MGI:1915084)
chr15	78167467	78234706	12q23-q24	15q25.1	614362	ACSBG1, BG, BG1, KIAA0631	Acyl-CoA synthetase, bubble gum family, member 1	ACSBG1	23205	ENSG00000103740			Acsbg1 (MGI:2385656)
chr15	78340323	78348229	15q24	15q25.1	180230	CRABP1, RBP5	Cellular retinoic acid-binding protein-1	CRABP1	1381	ENSG00000166426	distal to APL breakpoint		Crabp1 (MGI:88490)
chr15	78437430	78501455	15q25.1	15q25.1	147582	IREB2	Iron-responsive element-binding protein-2	IREB2	3658	ENSG00000136381			Ireb2 (MGI:1928268)
chr15	78507563	78537372	15q25.1	15q25.1	614681	AGPHD1	Aminoglycoside phosphotransferase domain-containing protein 1	HYKK	123688	ENSG00000188266			Hykk (MGI:2443139)
chr15	78540404	78549261	15q25.1	15q25.1	176846	PSMA4, PSC9, HC9	Proteasome subunit, alpha-type, 4	PSMA4	5685	ENSG00000041357			Psma4 (MGI:1347060)
chr15	78565519	78595268	15q25.1	15q25.1	118505	CHRNA5, LNCR2	Cholinergic receptor, neuronal nicotinic, alpha polypeptide-5	CHRNA5	1138	ENSG00000169684		{Lung cancer susceptibility 2}, 612052 (3); {Nicotine dependence, susceptibility to}, 612052 (3)	Chrna5 (MGI:87889)
chr15	78593051	78621294	15q25.1	15q25.1	118503	CHRNA3, LNCR2, PAOD2	Cholinergic receptor, neuronal nicotinic, alpha polypeptide-3	CHRNA3	1136	ENSG00000080644		{Lung cancer susceptibility 2}, 612052 (3)	Chrna3 (MGI:87887)
chr15	78623281	78655585	15q24	15q25.1	118509	CHRNB4	Cholinergic receptor, neuronal nicotinic, beta polypeptide-4	CHRNB4	1143	ENSG00000117971			Chrnb4 (MGI:87892)
chr15	78759202	78811475	15q25.1	15q25.1	605009	ADAMTS7	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 7	ADAMTS7	11173	ENSG00000136378			Adamts7 (MGI:1347346)
chr15	78872780	78897738	15q24	15q25.1	607303	MORF4L1, MRG15	Mortality factor 4-like 1	MORF4L1	10933	ENSG00000185787			Morf4l1 (MGI:1096551)
chr15	78921749	78945097	15q24-q25	15q25.1	116820	CTSH	Cathepsin H	CTSH	1512	ENSG00000103811			Ctsh (MGI:107285)
chr15	79209787	79209870	15q25.1	15q25.1	613146	MIR184, MIRN184, KTCNCT, EDICT	Micro RNA 184	MIR184	406960			EDICT syndrome, 614303 (3), Autosomal dominant	
chr15	79843546	79897284	15q25.1	15q25.1	604197	MTHFS	5,10-methenyltetrahydrofolate synthetase	MTHFS	10588	ENSG00000136371			Mthfsl,Mthfs (MGI:1340032,MGI:3780550)
chr15	79960889	79971300	15q24.3	15q25.1	601056	BCL2A1	BCL2-related protein A1	BCL2A1	597	ENSG00000140379			Bcl2a1d,Bcl2a1b,Bcl2a1a (MGI:102687,MGI:1278325,MGI:1278326)
chr15	80059567	80138392	15q25.1	15q25.1	610183	ZFAND6, ZA20D3, AWP1	Zinc finger AN1 domain-containing protein 6	ZFAND6	54469	ENSG00000086666			Zfand6 (MGI:1929510)
chr15	80152822	80186581	15q23-q25	15q25.1	613871	FAH	Fumarylacetoacetase	FAH	2184	ENSG00000103876		Tyrosinemia, type I, 276700 (3), Autosomal recessive	Fah (MGI:95482)
chr15	80404349	80597936	15q24	15q25.1	606036	ARNT2, WEDAS	Aryl hydrocarbon receptor nuclear translocator 2	ARNT2	9915	ENSG00000172379	mutation identified in 1 WEDAS family	?Webb-Dattani syndrome, 615926 (3), Autosomal recessive	Arnt2 (MGI:107188)
chr15	80779342	80951770	15q24	15q25.1	608366	KIAA1199	KIAA1199 gene	CEMIP	57214	ENSG00000103888			Cemip (MGI:2443629)
chr15	80947325	80989877	Chr.15	15q25.1	607783	MESDC2, MESD, BOCA, KIAA0081	Mesoderm development candidate gene 2	MESD	23184	ENSG00000117899			Mesd (MGI:1891421)
chr15	81000953	81004003	15q25.1	15q25.1	615466	MESDC1	Mesoderm development candidate 1	TLNRD1	59274	ENSG00000140406			Tlnrd1 (MGI:1891420)
chr15	81196877	81312762	15q26.1	15q25.1	603035	IL16, LCF	Interleukin 16	IL16	3603	ENSG00000172349			Il16 (MGI:1270855)
chr15	81312665	81324182	15q26	15q25.1	607050	STARD5	Start domain-containing protein 5	STARD5	80765	ENSG00000172345			Stard5 (MGI:2156765)
chr15	81331104	81374155	15q25.1	15q25.1	617196	TMC3	Transmembrane channel-like protein 3	TMC3	342125	ENSG00000188869			Tmc3 (MGI:2669033)
chr15	82041777	82046142	15q25.2	15q25.2	611008	MEX3B, RKHD3	Mex-3, C. elegans, homolog of, B	MEX3B	84206	ENSG00000183496			Mex3b (MGI:1918252)
chr15	82130219	82262762	15q25.2	15q25.2	617538	EFL1, RIA1, EFTUD1, FAM42A	Elongation factor-like GTPase 1	EFL1	79631	ENSG00000140598			Efl1 (MGI:2141969)
chr15	82536749	82540563	15q	15q25.2	180472	RPS17, RPS17L1, RPS17L2, DBA4	Ribosomal protein S17	RPS17	6218	ENSG00000182774	previously on chr.11; pseudogenes on 5q33-qter and 17q	Diamond-Blackfan anemia 4, 612527 (3), Autosomal dominant	Rps17 (MGI:1309526)
chr15	82543200	82648015	15q25.2	15q25.2	607342	CPEB1	Cytoplasmic polyadenylation element-binding protein 1	CPEB1	64506	ENSG00000214575			Cpeb1 (MGI:108442)
chr15	82659280	82709907	15q25.2	15q25.2	602166	AP3B2, NAPTB, EIEE48	Adaptor-related protein complex 3, beta 2 subunit	AP3B2	8120	ENSG00000103723		Epileptic encephalopathy, early infantile, 48, 617276 (3), Autosomal recessive	Ap3b2 (MGI:1100869)
chr15	82755944	82756070	15q25.2	15q25.2	612675	SCARNA15, ACA45	Small cajal body-specific RNA 15	SCARNA15	677778				
chr15	82809627	82834860	15q25.2	15q25.2	612393	WHAMM, KIAA1971	Was protein homolog associated with actin, golgi membranes, and microtubules	WHAMM	123720	ENSG00000156232			Whamm (MGI:2142282)
chr15	82836945	82986175	15q24.3	15q25.2	604799	HOMER2, HOMER2B, HOMER2A, DFNA68	Homer, homolog 2 (Drosophila)	HOMER2	9455	ENSG00000103942	mutation identified in 1 DFNA68 family	?Deafness, autosomal dominant 68, 616707 (3), Autosomal dominant	Homer2 (MGI:1347354)
chr15	82986202	82991056	15q25.2	15q25.2	614547	FAM103A1, RAM	Family with sequence similarity 103, member A1	RAMMET	83640	ENSG00000169612			Fam103a1 (MGI:1914398)
chr15	83107485	83145402	15q24-q26	15q25.2	606562	TM6SF1	Transmembrane 6 superfamily, member 1	TM6SF1	53346	ENSG00000136404			Tm6sf1 (MGI:1933209)
chr15	83112737	83208017	15q25	15q25.2	616643	HRP3, HDGFRP3	Hepatoma-derived growth factor-related protein 3	HDGFL3	50810	ENSG00000166503			Hdgfl3 (MGI:1352760)
chr15	83255883	83284715	15q25.1	15q25.2	601930	BNC1	Basonuclin	BNC1	646	ENSG00000169594			Bnc1 (MGI:1097164)
chr15	83447122	83618742	15q24	15q25.2	603362	SH3GL3	SH3-domain GRB2-like 3	SH3GL3	6457	ENSG00000140600			Sh3gl3 (MGI:700011)
chr15	83654085	84039841	15q25.2	15q25.2	609199	ADAMTSL3, KIAA1233	ADAMTS-like protein 3	ADAMTSL3	57188	ENSG00000156218			Adamtsl3 (MGI:3028499)
chr15	84631459	84642462	15q25.2	15q25.2	610417	SCAND2	SCAN domain-containing 2	SCAND2P	54581				
chr15	84641494	84654342	15q25.2	15q25.2	616144	WDR73, HSPC264, GAMOS1	WD repeat-containing protein 73	WDR73	84942	ENSG00000177082		Galloway-Mowat syndrome 1, 251300 (3), Autosomal recessive	Wdr73 (MGI:1919218)
chr15	84655128	84658610	15q22-qter	15q25.2	162340	NMB	Neuromedin B	NMB	4828	ENSG00000197696			Nmb (MGI:1915289)
chr15	84700000	93800000	15q25.3-q26.1		609893	CHNG3, RTSH	Hypothyroidism, congenital, nongoitrous, 3		780915		max lod at D15S655	Hypothyroidism, congenital, nongoitrous, 3, 609893 (2)	
chr15	84700000	98000000	15q25.3-q26.2		608691	MDD2	Major depressive disorder 2		431709			Major depressive disorder 2, 608516 (2)	
chr15	84748555	84806431	15q25.3	15q25.3	613624	ZNF592, KIAA0211	Zinc finger protein 592	ZNF592	9640	ENSG00000166716			Zfp592 (MGI:2443541)
chr15	84816679	84873481	15q25.2	15q25.3	617608	ALPK3, MIDORI, KIAA1330	Alpha kinase 3	ALPK3	57538	ENSG00000136383			Alpk3 (MGI:2151224)
chr15	84884349	84975648	15q25-q26	15q25.3	606207	SLC28A1, CNT1	Solute carrier family 28 (sodium-coupled nucleoside transporter), member 1	SLC28A1	9154	ENSG00000156222			Slc28a1 (MGI:3605073)
chr15	84980512	85139144	15q25.3-q26.1	15q25.3	602972	PDE8A	Phosphodiesterase 8A	PDE8A	5151	ENSG00000073417			Pde8a (MGI:1277116)
chr15	85380615	85749357	15q24-q25	15q25.3	604686	AKAP13, HT31, LBC, BRX	A-kinase anchor protein 13	AKAP13	11214	ENSG00000170776			Akap13 (MGI:2676556)
chr15	86079638	87031475	15q25.3	15q25.3	615496	AGBL1, CCP4, FECD8	ATP/GTP-binding protein-like 1	AGBL1	123624	ENSG00000273540		Corneal dystrophy, Fuchs endothelial, 8, 615523 (3), Autosomal dominant	Agbl1 (MGI:3646469)
chr15	87859748	88256795	15q25	15q25.3	191316	NTRK3, TRKC	Neurotrophic tyrosine kinase, receptor, type 3	NTRK3	4916	ENSG00000140538			Ntrk3 (MGI:97385)
chr15	88459477	88467401	15q24-q25	15q25.3	611851	MRPL46	Mitochondrial ribosomal protein L46	MRPL46	26589	ENSG00000259494			Mrpl46 (MGI:1914558)
chr15	88467452	88480766	15q25	15q25.3	611977	MRPS11	Mitochondrial ribosomal protein S11	MRPS11	64963	ENSG00000181991			Mrps11 (MGI:1915244)
chr15	88500000	101991189	15q26-qter		612626	DEL15q26qter, C15DELq26qter	Chromosome 15q26-qter deletion syndrome				contiguous gene deletion syndrome	Chromosome 15q26-qter deletion syndrome, 612626 (4), Isolated cases	
chr15	88500000	93800000	15q26.1		142340	DIH1, HCD	Hernia, congenital diaphragmatic 1	DIH1	1732			Hernia, congenital diaphragmatic 1, 142340 (2), Multifactorial	
chr15	88500000	101991189	15q26		600318	IDDM3	Insulin-dependent diabetes mellitus-3	IDDM3	3402			{Diabetes mellitus, insulin-dependent, 3}, 600318 (2)	
chr15	88500000	101991189	15q26-qter		614846	LVSKS	Levy-Shanske syndrome (tetrasomy 15q26)					Levy-Shanske syndrome, 614846 (4)	
chr15	88500000	101991189	15q26.1-qter		166800	OTSC1, OTS	Otosclerosis 1	OTSC1	5012			Otosclerosis 1, 166800 (2), Autosomal dominant	
chr15	88500000	101991189	15q26		609289	VVS	Syncope, familial vasovagal		105031671			Syncope, familial vasovagal, 609289 (2), Autosomal dominant	
chr15	88501923	88546702	15q25.3	15q26.1	608727	DET1	De-etiolated 1, Arabidopsis, homolog of	DET1	55070	ENSG00000140543			Det1 (MGI:1923625)
chr15	88604600	88632280	15q26.1	15q26.1	610177	ISG20L1, AEN	Interferon-stimulated exonuclease gene 20kD-like 1	AEN	64782	ENSG00000181026			Aen (MGI:1915298)
chr15	88635613	88656343	15q26	15q26.1	604533	ISG20, HEM45	Interferon-stimulated gene, 20kD	ISG20	3669	ENSG00000172183			Isg20 (MGI:1928895)
chr15	88803441	88875353	15q26.1	15q26.1	155760	ACAN, AGC1, CSPG1, MSK16, SEDK, SSOAOD	Aggrecan (chondroitin sulfate proteoglycan-1, large aggregating proteoglycan, antigen identifies by monoclonal antibody A0122)	ACAN	176	ENSG00000157766	mutation identified in 1 SEDK family and 1 SEMDAG family	Short stature and advanced bone age, with or without early-onset osteoarthritis and/or osteochondritis dissecans, 165800 (3), Autosomal dominant; ?Spondyloepimetaphyseal dysplasia, aggrecan type, 612813 (3), Autosomal recessive; ?Spondyloepiphyseal dysplasia, Kimberley type, 608361 (3), Autosomal dominant	
chr15	88898682	88913468	15q25	15q26.1	602281	MFGE8	Milk fat globule-EGF factor 8	MFGE8	4240	ENSG00000140545			Mfge8 (MGI:102768)
chr15	89088149	89202359	15q26.1	15q26.1	612196	ABHD2, LABH2	Abhydrolase domain-containing 2	ABHD2	11057	ENSG00000140526			Abhd2 (MGI:1914344)
chr15	89209866	89223178	15q26	15q26.1	180090	RLBP1	Retinaldehyde-binding protein-1, cellular	RLBP1	6017	ENSG00000140522		Bothnia retinal dystrophy, 607475 (3), Autosomal recessive; Fundus albipunctatus, 136880 (3), Autosomal recessive, Autosomal dominant; Newfoundland rod-cone dystrophy, 607476 (3); Retinitis punctata albescens, 136880 (3), Autosomal recessive, Autosomal dominant	Rlbp1 (MGI:97930)
chr15	89243953	89317131	15q25-q26	15q26.1	611360	FANCI, KIAA1794	FANCI gene	FANCI	55215	ENSG00000140525		Fanconi anemia, complementation group I, 609053 (3), Autosomal recessive	Fanci (MGI:2384790)
chr15	89316304	89334794	15q25	15q26.1	174763	POLG, POLG1, POLGA, PEO, SANDO, SCAE, MTDPS4A, MTDPS4B, MIRAS	Polymerase (DNA directed), gamma	POLG	5428	ENSG00000140521	PEO also digenic with C10orf2	Mitochondrial DNA depletion syndrome 4A (Alpers type), 203700 (3), Autosomal recessive; Mitochondrial DNA depletion syndrome 4B (MNGIE type), 613662 (3), Autosomal recessive; Mitochondrial recessive ataxia syndrome (includes SANDO and SCAE), 607459 (3), Autosomal recessive; Progressive external ophthalmoplegia, autosomal dominant 1, 157640 (3), Autosomal dominant; Progressive external ophthalmoplegia, autosomal recessive 1, 258450 (3), Autosomal recessive	Polg (MGI:1196389)
chr15	89368016	89368105	15q26.1	15q26.1	611188	MIR9-3, MIRN9-3	Micro RNA 9-3	MIR9-3	407051				
chr15	89471406	89496612	15q25	15q26.1	605381	RHCG, RHGK	Rhesus blood group-associated kidney homolog	RHCG	51458	ENSG00000140519			Rhcg (MGI:1888517)
chr15	89575586	89628022	15q26.1	15q26.1	613298	C15orf42, TRESLIN	Treslin	TICRR	90381	ENSG00000140534			Ticrr (MGI:1924261)
chr15	89627969	89663085	15q26.1	15q26.1	611254	KIF7, HLS2, ACLS, JBTS12, AGBK	Kinesin family member 7	KIF7	374654	ENSG00000166813	mutation identified in 1 HLS2 family and 1 AGBK family	Acrocallosal syndrome, 200990 (3), Autosomal recessive; ?Al-Gazali-Bakalinova syndrome, 607131 (3), Autosomal recessive; ?Hydrolethalus syndrome 2, 614120 (3), Autosomal recessive; Joubert syndrome 12, 200990 (3), Autosomal recessive	Kif7 (MGI:1098239)
chr15	89664364	89679416	15q26	15q26.1	170290	PLIN1, PLIN, FPLD4	Perilipin 1	PLIN1	5346	ENSG00000166819		Lipodystrophy, familial partial, type 4, 613877 (3), Autosomal dominant	Plin1 (MGI:1890505)
chr15	89681530	89690783	15q26.1	15q26.1	603866	PEX11A	Peroxisome biogenesis factor 11A	PEX11A	8800	ENSG00000166821			Pex11a (MGI:1338788)
chr15	89734771	89751308	15q26.1	15q26.1	608689	MESP1	Mesoderm posterior bHLH transcription factor 1	MESP1	55897	ENSG00000166823			Mesp1 (MGI:107785)
chr15	89776357	89778753	15q26.1	15q26.1	605195	MESP2, SCDO2	Mesoderm posterior bHLH transcription factor 2	MESP2	145873	ENSG00000188095		Spondylocostal dysostosis 2, autosomal recessive, 608681 (3)	Mesp2 (MGI:1096325)
chr15	89784894	89814851	15q25-q26	15q26.1	151530	ANPEP, PEPN, CD13	Alanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)	ANPEP	290	ENSG00000166825			Anpep (MGI:5000466)
chr15	89830598	89894384	15q26.1	15q26.1	602416	AP3S2	Adaptor-related protein complex 3, sigma-2 subunit	AP3S2	10239	ENSG00000157823			Ap3s2 (MGI:1337060)
chr15	89896531	89912989	15q26.1	15q26.1	615543	C15orf38, ARPIN	Chromosome 15 open reading frame 38	ARPIN	348110	ENSG00000242498			Arpin (MGI:1917670)
chr15	90083977	90102553	15q26.1	15q26.1	147650	IDH2, IDPM, D2HGA2	Isocitrate dehydrogenase, mitochondrial	IDH2	3418	ENSG00000182054		D-2-hydroxyglutaric aciduria 2, 613657 (3)	Idh2 (MGI:96414)
chr15	90184919	90229659	15q26.1	15q26.1	617029	SEMA4B	Semaphorin 4B	SEMA4B	10509	ENSG00000185033			Sema4b (MGI:107559)
chr15	90230244	90265758	15q25.3-q26.1	15q26.1	602293	CIB, KIP	Calcium- and integrin-binding protein (kinase-interacting protein)	CIB1	10519	ENSG00000185043			Cib1 (MGI:1344418)
chr15	90265662	90272210	15q26.1	15q26.1	616718	NGRN	Neurite outgrowth-associated protein	NGRN	51335	ENSG00000182768			Ngrn (MGI:1933212)
chr15	90388240	90502242	15q26	15q26.1	603379	IQGAP1, SAR1	RASGAP-like with IQ motifs (sar1, S. pombe, homolog of)	IQGAP1	8826	ENSG00000140575	amplified in gastric cancer		Iqgap1 (MGI:1352757)
chr15	90529885	90645344	15q26.1	15q26.1	608986	CRTC3, TORC3	CREB-regulated transcription coactivator 3	CRTC3	64784	ENSG00000140577			Crtc3 (MGI:1917711)
chr15	90717326	90815461	15q26.1	15q26.1	604610	RECQL3, RECQ2, BLM, BS	DNA helicase, RecQ-like 3	BLM	641	ENSG00000197299		Bloom syndrome, 210900 (3), Autosomal recessive	Blm (MGI:1328362)
chr15	90868591	90883457	15q25-q26	15q26.1	136950	FURIN, PACE, FUR, PCSK3	Furin (paired basic amino acid cleaving enzyme)	FURIN	5045	ENSG00000140564	less than 1.1kb 5' to FES		Furin (MGI:97513)
chr15	90884420	90895775	15q26.1	15q26.1	190030	FES	Oncogene FES, feline sarcoma virus	FES	2242	ENSG00000182511			Fes (MGI:95514)
chr15	90902217	90922584	15q25	15q26.1	600988	MAN2A2, MANA2X	Mannosidase, alpha-, type II, isozyme X	MAN2A2	4122	ENSG00000196547			Man2a2 (MGI:2150656)
chr15	90930179	90954092	15q25-q26	15q26.1	611219	UNC45A, SMAP1, GCUNC45	UNC45, C. elegans, homolog of, A	UNC45A	55898	ENSG00000140553			Unc45a (MGI:2142246)
chr15	90966037	90994650	15q26.1	15q26.1	603484	PRC1	Protein regulating cytokinesis 1	PRC1	9055	ENSG00000198901			Prc1 (MGI:1858961)
chr15	90998415	91022838	15q26.1	15q26.1	608552	VPS33B	Vacuolar protein sorting 33, yeast, homolog of, B	VPS33B	26276	ENSG00000184056		Arthrogryposis, renal dysfunction, and cholestasis 1, 208085 (3), Autosomal recessive	Vps33b (MGI:2446237)
chr15	91099587	91302564	15q26.1	15q26.1	185861	SV2B, KIAA0735	Synaptic vesicle glycoprotein 2B	SV2B	9899	ENSG00000185518			Sv2b (MGI:1927338)
chr15	91853707	92172434	15q26	15q26.1	612435	SLCO3A1, OATPD, OATP3A1	Solute carrier organic anion transporter family, member 3A1	SLCO3A1	28232	ENSG00000176463			Slco3a1 (MGI:1351867)
chr15	92393886	92468727	15q26	15q26.1	602546	STX	Sialyltransferase X	ST8SIA2	8128	ENSG00000140557			St8sia2 (MGI:106020)
chr15	92900320	93028006	15q26	15q26.1	602119	CHD2, EEOC	Chromodomain helicase DNA binding protein-2	CHD2	1106	ENSG00000173575		Epileptic encephalopathy, childhood-onset, 615369 (3), Autosomal dominant	Chd2 (MGI:2448567)
chr15	93043405	93089213	15q26.1	15q26.1	607362	RGMA	RGM domain family, member A (repulsive guidance molecule)	RGMA	56963	ENSG00000182175			Rgma (MGI:2679262)
chr15	94231537	94483951	15q26.2	15q26.2	616297	MCTP2	Multiple C2 domains-containing transmembrane protein 2	MCTP2	55784	ENSG00000140563			Mctp2 (MGI:2685335)
chr15	96325927	96340262	15q26.1-q26.2	15q26.2	107773	NR2F2, TFCOUP2, ARP1, CHTD4	Nuclear receptor subfamily 2, group F, member 2 (transcription factor COUP 2)	NR2F2	7026	ENSG00000185551		Congenital heart defects, multiple types, 4, 615779 (3), Autosomal dominant	Nr2f2 (MGI:1352452)
chr15	96783406	96785614	15q26.2	15q26.2	613948	SPATA8, SRG8	Spermatogenesis-associated protein 8	SPATA8	145946	ENSG00000185594			
chr15	98648538	98964529	15q25-q26	15q26.3	147370	IGF1R	Insulin-like growth factor-1 receptor	IGF1R	3480	ENSG00000140443		Insulin-like growth factor I, resistance to, 270450 (3), Autosomal recessive, Autosomal dominant	Igf1r (MGI:96433)
chr15	99105068	99136585	Chr.15	15q26.3	606087	DMN	Desmuslin	SYNM	23336	ENSG00000182253			Synm (MGI:2661187)
chr15	99565546	99716487	15q26	15q26.3	600660	MEF2A, ADCAD1	MADS box transcription enhancer factor 2, polypeptide A (myocyte enhancer factor 2A)	MEF2A	4205	ENSG00000068305		{Coronary artery disease, autosomal dominant, 1}, 608320 (3), Autosomal dominant	Mef2a (MGI:99532)
chr15	99971437	100342923	15q24	15q26.3	607511	ADAMTS17, WMS4	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 17	ADAMTS17	170691	ENSG00000140470		Weill-Marchesani 4 syndrome, recessive, 613195 (3), Autosomal recessive	Adamts17 (MGI:3588195)
chr15	100400394	100544981	15q26.3	15q26.3	615276	CERS3, LASS3, ARCI9	Ceramide synthase 3	CERS3	204219	ENSG00000154227		Ichthyosis, congenital, autosomal recessive 9, 615023 (3), Autosomal recessive	Cers3 (MGI:2681008)
chr15	100566913	100603031	15q26	15q26.3	610350	LINS1, WINS1, FLJ10583, MRT27	Lines, Drosophila, homolog of, 1	LINS1	55180	ENSG00000140471		Mental retardation, autosomal recessive 27, 614340 (3), Autosomal recessive	Lins1 (MGI:1919885)
chr15	100602549	100651700	15q26.3	15q26.3	615052	ASB7	Ankyrin repeat- and SOCS box-containing protein 7	ASB7	140460	ENSG00000183475			Asb7 (MGI:2152835)
chr15	100879691	100916625	15q26	15q26.3	600463	ALDH1A3, ALDH6, MCOP8	Aldehyde dehydrogenase 1 family, member A3	ALDH1A3	220	ENSG00000184254		Microphthalmia, isolated 8, 615113 (3), Autosomal recessive	Aldh1a3 (MGI:1861722)
chr15	100919016	101072889	15q26.3	15q26.3	610986	LRRK1	Leucine-rich repeat kinase 1	LRRK1	79705	ENSG00000154237			Lrrk1 (MGI:2142227)
chr15	101175722	101251931	15q26.3	15q26.3	608183	CHSY1, KIAA0990, TPBS	Carbohydrate synthase 1	CHSY1	22856	ENSG00000131873		Temtamy preaxial brachydactyly syndrome, 605282 (3), Autosomal recessive	Chsy1 (MGI:2681120)
chr15	101270908	101277519	15q26.3	15q26.3	607918	SELENOS, SEPS1, SELS, VIMP, ADO15	Selenoprotein S	SELENOS	55829	ENSG00000131871			Selenos (MGI:95994)
chr15	101281509	101295281	15q26.3	15q26.3	603521	SNRPA1	Small nuclear ribonucleoprotein polypeptide A'	SNRPA1	6627	ENSG00000131876			Snrpa1 (MGI:1916231)
chr15	101303927	101489983	15q26	15q26.3	167405	PCSK6, PACE4, SPC4	Proprotein convertase subtilisin/kexin type 6	PCSK6	5046	ENSG00000140479			Pcsk6 (MGI:102897)
chr15	101632976	101652390	15q26.3	15q26.3	610014	TM2D3, BLP2	TM2 domain-containing protein 3	TM2D3	80213	ENSG00000184277			Tm2d3 (MGI:1915884)
chr15	0	101991189	Chr.15		120340	COL1AR	Collagen I, alpha, receptor	COL1AR	1279				
chr16	0	16700000	16p13		608903	ADHD1	Attention deficit-hyperactivity disorder, susceptibility to, 1		450087		max lod at D16S3114	{Attention deficit-hyperactivity disorder}, 143465 (2), Autosomal dominant	
chr16	0	16700000	16p13		608558	BMIQ5	Body mass index quantitative trait locus 5	BMIQ5	449016		near D16S404 and D16S764	[Body mass index QTL5], 608558 (2)	
chr16	0	16700000	16pter-p13		607339	CHDS1	Coronary heart disease, susceptibility to, 1		338334			{Coronary heart disease, susceptibility to}, 607339 (2)	
chr16	0	7800000	16p13.3		610543	DEL16p13.3, RSTSS	Chromosome 16p13.3 deletion syndrome (Rubinstein-Taybi deletion syndrome)				contiguous gene deletion syndrome	Chromosome 16p13.3 deletion syndrome, 610543 (4)	
chr16	0	7800000	16p13.3		613458	DUP16p13.3, C16DUPq13.3	Chromosome 16p13.3 duplication syndrome				contiguous gene duplication syndrome	Chromosome 16p13.3 duplication syndrome, 613458 (4), Autosomal dominant, Isolated cases	
chr16	0	7800000	16pter-p13.3		141750	HBHR, ATR1	Alpha-thalassemia/mental retardation syndrome, type 1				contiguous gene syndrome involving deletion of HBA1 and HBA2	Alpha-thalassemia/mental retardation syndrome, type 1, 141750 (4), Autosomal dominant	
chr16	0	36800000	16p		606668	IBD8	Inflammatory bowel disease 8	IBD8	170595			{Inflammatory bowel disease 8}, 606668 (2)	
chr16	0	28500000	16p13-p12		610260	IHPS2	Pyloric stenosis, infantile hypertrophic, 2		780923			Pyloric stenosis, infantile hypertrophic, 2, 610260 (2)	
chr16	0	7800000	16p13.3		156850	MCOPCT1	Microphthalmia with cataract 1		8130		proximal to HBA1	Microphthalmia with cataract 1, 156850 (2), Autosomal dominant	
chr16	0	7800000	16p13.3		600273	PKDTS	Polycystic kidney disease, infantile severe, with tuberous sclerosis				contiguous gene syndrome caused by deletion of TSC2 and PKD1	Polycystic kidney disease, infantile severe, with tuberous sclerosis, 600273 (4), Autosomal dominant	
chr16	46978	53631	16p13.3	16p13.3	606007	POLR3K, RPC11	Polymerase III, RNA, subunit K	POLR3K	51728	ENSG00000161980			Polr3k (MGI:1914255)
chr16	58058	76354	16p13.3	16p13.3	614403	RHBDF1, IRHOM1, DIST1	Rhomboid 5, Drosophila, homolog of, 1	RHBDF1	64285	ENSG00000007384			Rhbdf1 (MGI:104328)
chr16	77018	85850	16pter-p13.3	16p13.3	156565	MPG, MDG	N-methylpurine DNA glycosylase	MPG	4350	ENSG00000103152	75kb upstream of HBZ		Mpg (MGI:97073)
chr16	85800	138697	16p13.3	16p13.3	600928	NPRL3, CGTHBA, FFEVF3	Nitrogen permease regulator-like 3	NPRL3	8131	ENSG00000103148		Epilepsy, familial focal, with variable foci 3, 617118 (3), Autosomal dominant	Nprl3 (MGI:109258)
chr16	142421	154510	16pter-p13.3	16p13.3	142310	HBZ	Hemoglobin, zeta	HBZ	3050	ENSG00000130656			Hba-x (MGI:96019)
chr16	165973	166767	16p13.3	16p13.3	609639	HBM	Hemoglobin mu	HBM	3042	ENSG00000206177	?functional		
chr16	172846	173709	16pter-p13.3	16p13.3	141850	HBA2, HBH	Hemoglobin alpha-2	HBA2	3040	ENSG00000188536		Erythrocytosis (3); Heinz body anemia, 140700 (3), Autosomal dominant; Hemoglobin H disease, nondeletional, 613978 (3); Hypochromic microcytic anemia (3); Thalassemia, alpha-, 604131 (3)	Hba-a1,Hba-a2 (MGI:96016,MGI:96015)
chr16	176650	177521	16pter-p13.3	16p13.3	141800	HBA1, HBH	Hemoglobin alpha-1	HBA1	3039	ENSG00000206172	1, 2, or 3 loci; 5'-zeta-pseudozeta-pseudoalpha-alpha-2-alpha-1-3'	Erythremias, alpha- (3); Heinz body anemias, alpha-, 140700 (3), Autosomal dominant; Hemoglobin H disease, nondeletional, 613978 (3); Methemoglobinemias, alpha- (3); Thalassemias, alpha-, 604131 (3)	Hba-a1,Hba-a2 (MGI:96016,MGI:96015)
chr16	180333	181178	16pter-p13.3	16p13.3	142240	HBQ1	Hemoglobin theta-1	HBQ1	3049	ENSG00000086506			Hbq1b (MGI:3613460)
chr16	188968	229481	16p13.3	16p13.3	607782	LUC7L	Luc7, S. cerevisiae, homolog of	LUC7L	55692	ENSG00000007392			Luc7l (MGI:1914228)
chr16	268300	275942	16p13.3	16p13.3	603895	RS11	Regulator of G protein signaling 11	RGS11	8786	ENSG00000076344			Rgs11 (MGI:1354739)
chr16	283136	287214	16p13.3	16p13.3	608012	PDIA2, PDIP	Protein disulfide isomerase, family A, member 2	PDIA2	64714	ENSG00000185615			Pdia2 (MGI:1916441)
chr16	287439	355225	16p13.3	16p13.3	603816	AXIN1, AXIN	Axis inhibitor 1	AXIN1	8312	ENSG00000103126	hypermethylation of AXIN1 promoter seen in 1 CDUP patient	?Caudal duplication anomaly, 607864 (3); Hepatocellular carcinoma, somatic, 114550 (3)	Axin1 (MGI:1096327)
chr16	367383	370568	16p13.3	16p13.3	604853	MRPL28, MAAT1	Mitochondrial ribosomal protein L28	MRPL28	10573	ENSG00000086504			Mrpl28 (MGI:1915861)
chr16	396754	400753	16p13.3	16p13.3	601818	NME4	Non-metastatic cells 4, protein expressed in	NME4	4833	ENSG00000103202			Nme4 (MGI:1931148)
chr16	401857	412486	16p13.3	16p13.3	615839	DECR2, PDCR	2,4-dienoyl-CoA reductase 2, peroxisomal	DECR2	26063	ENSG00000242612			Decr2 (MGI:1347059)
chr16	425620	522484	16p13.3	16p13.3	608738	RAB11FIP3, EFERIN, KIAA0665	RAB11 family-interacting protein 3	RAB11FIP3	9727	ENSG00000090565			Rab11fip3 (MGI:2444431)
chr16	527793	554635	16p13.3	16p13.3	603267	SOLH	Small optic lobes, Drosophila, homolog of	CAPN15	6650	ENSG00000103326	conflicting localization to Xq24		Capn15 (MGI:1355075)
chr16	569967	584135	16p13.3	16p13.3	605754	PIGQ	Phosphatidylinositol glycan anchor biosynthesis class Q protein	PIGQ	9091	ENSG00000007541			Pigq (MGI:1333114)
chr16	631011	634115	16p13.3	16p13.3	608021	WFIKKN1, WFIKKN	WAP, follistatin, immunoglobulin, Kunitz, and NTR domains-containing protein 1	WFIKKN1	117166	ENSG00000127578			Wfikkn1 (MGI:2670967)
chr16	668082	674173	16p13.3	16p13.3	613889	RHOT2, MIRO2, ARHT2	Ras homolog gene family, member T2	RHOT2	89941	ENSG00000140983			Rhot2 (MGI:2384892)
chr16	675665	678270	16p13.3	16p13.3	603264	RHBDL, RRP	Rhomboid, Drosophila, homolog of	RHBDL1	9028	ENSG00000103269			Rhbdl1 (MGI:2384891)
chr16	680110	682767	16p13.3	16p13.3	607207	STUB1, CHIP, SCAR16	STIP1 homologous and U box-containing protein 1	STUB1	10273	ENSG00000103266		Spinocerebellar ataxia, autosomal recessive 16, 615768 (3), Autosomal recessive	Stub1 (MGI:1891731)
chr16	692499	707852	16p13.3	16p13.3	609082	FBXL16, FBL16, C16orf22	F-box and leucine-rich repeat protein 16	FBXL16	146330	ENSG00000127585			Fbxl16 (MGI:2448488)
chr16	715172	719654	16p13.3	16p13.3	610998	METRN	Meteorin	METRN	79006	ENSG00000103260			Metrn (MGI:1917333)
chr16	722577	726879	16p13.3	16p13.3	614666	CCDC78, C16orf25, CNM4	Coiled-coil domain-containing protein 78	CCDC78	124093	ENSG00000162004	mutation identified in 1 CNM4 family	?Centronuclear myopathy 4, 614807 (3), Autosomal dominant	Ccdc78 (MGI:2685784)
chr16	729752	741037	16p13.3	16p13.3	611118	NARFL, IOP1	Nuclear prelamin A recognition factor-like	NARFL	64428	ENSG00000103245			Narfl (MGI:1914813)
chr16	760764	768864	16p13.3	16p13.3	601051	MSLN	Mesothelin	MSLN	10232	ENSG00000102854			Msln (MGI:1888992)
chr16	788621	798073	16p13.3	16p13.3	613201	CHTF18, CHL12, CTF18	Chromosome transmission fidelity factor 18, S. cerevisiae, homolog of	CHTF18	63922	ENSG00000127586			Chtf18 (MGI:2384887)
chr16	798040	800732	16p13.3	16p13.3	607298	GNG13	Guanine nucleotide-binding protein, gamma-13	GNG13	51764	ENSG00000127588			Gng13 (MGI:1925616)
chr16	853631	981612	16p13.3	16p13.3	611761	LMF1, TMEM112	Lipase maturation factor 1	LMF1	64788	ENSG00000103227		Lipase deficiency, combined, 246650 (3), Autosomal recessive	Lmf1 (MGI:1923733)
chr16	981807	986978	16p13.3	16p13.3	605923	SOX8	SRY-box 8	SOX8	30812	ENSG00000005513			Sox8 (MGI:98370)
chr16	1072755	1081453	16p13.3	16p13.3	182455	SSTR5	Somatostatin receptor-5	SSTR5	6755	ENSG00000162009		Somatostatin analog, resistance to (3)	Sstr5 (MGI:894282)
chr16	1088225	1096305	16p13.3	16p13.3	614147	C1QTNF8, CTRP8	C1q- and tumor necrosis factor-related protein 8	C1QTNF8	390664	ENSG00000184471			
chr16	1153240	1221771	16p13.3	16p13.3	607904	CACNA1H, EIG6, ECA6, HALD4	Calcium channel, voltage-dependent, T type, alpha-1H subunit	CACNA1H	8912	ENSG00000196557		{Epilepsy, childhood absence, susceptibility to, 6}, 611942 (3); {Epilepsy, idiopathic generalized, susceptibility to, 6}, 611942 (3); Hyperaldosteronism, familial, type IV, 617027 (3), Autosomal dominant	Cacna1h (MGI:1928842)
chr16	1221650	1226453	16p13.3	16p13.3	609341	TPSG1, TMT	Tryptase, gamma-1	TPSG1	25823	ENSG00000116176			Tpsg1 (MGI:1349391)
chr16	1228335	1230183	16p13.3	16p13.3	191081	TPSB2, TPS2	Tryptase, beta 2	TPSB2	64499	ENSG00000197253			Tpsb2 (MGI:96942)
chr16	1240676	1242553	16p13.3	16p13.3	191080	TPSAB1, TPS1	Tryptase, alpha/beta-1	TPSAB1	7177	ENSG00000172236			Tpsb2 (MGI:96942)
chr16	1256271	1258492	16p13.3	16p13.3	609272	TPSD1, MCP7L1	Tryptase, delta-1	TPSD1	23430	ENSG00000095917			
chr16	1309152	1327017	16p13.3	16p13.3	601661	UBE2I	Ubiquitin-conjugating enzyme E2I (homologous to yeast UBC9)	UBE2I	7329	ENSG00000103275			Ube2i (MGI:107365)
chr16	1333604	1349440	16p13.3	16p13.3	604009	BAIAP3, BAP3	BAI1-associated protein 3	BAIAP3	8938	ENSG00000007516			Baiap3 (MGI:2685783)
chr16	1349239	1351871	16p13.3	16p13.3	617058	TSR3	TSR3, aminocarboxypropyl transferase ribosome maturation factor	TSR3	115939	ENSG00000007520			Tsr3 (MGI:1915577)
chr16	1351898	1363350	16p	16p13.3	607838	GNPTAG	N-acetylglucosamine-1-phosphotransferase, gamma subunit	GNPTG	84572	ENSG00000090581		Mucolipidosis III gamma, 252605 (3), Autosomal recessive	Gnptg (MGI:2147006)
chr16	1363204	1414748	16p13.3	16p13.3	617463	UNKL, ZC3H5L, C16orf28	Unkempt family-like zinc finger	UNKL	64718	ENSG00000059145			Unkl (MGI:1921404)
chr16	1444932	1475083	16p13	16p13.3	602727	CLCN7, CLC7, OPTA2, OPTB4	Chloride channel-7	CLCN7	1186	ENSG00000103249		Osteopetrosis, autosomal dominant 2, 166600 (3), Autosomal dominant; Osteopetrosis, autosomal recessive 4, 611490 (3)	Clcn7 (MGI:1347048)
chr16	1485938	1488908	16p13.3	16p13.3	613442	PTX4	Pentraxin 4, long	PTX4	390667	ENSG00000251692			Ptx4 (MGI:1915759)
chr16	1493344	1510458	16p13.3	16p13.3	611140	TELO2, TEL2, CLK2, KIAA0683, HCLK2, YHFS	Telomere maintenance 2, S. cerevisiae, homolog of	TELO2	9894	ENSG00000100726		You-Hoover-Fong syndrome, 616954 (3), Autosomal recessive	Telo2 (MGI:1918968)
chr16	1510426	1612107	16p13.3	16p13.3	614620	IFT140, KIAA0590, SRTD9, MZSDS, RP80	Intraflagellar transport 140, Chlamydomonas, homolog of	IFT140	9742	ENSG00000187535		Retinitis pigmentosa 80, 617781 (3), Autosomal recessive; Short-rib thoracic dysplasia 9 with or without polydactyly, 266920 (3), Autosomal recessive	Ift140 (MGI:2146906)
chr16	1528740	1555579	16p13.3	16p13.3	611002	TMEM204, C16orf30, CLP24	Transmembrane protein 204	TMEM204	79652	ENSG00000131634			Tmem204 (MGI:3039635)
chr16	1706182	1770316	16p13.3	16p13.3	605431	MAPK8IP3, SYD2, JSAP1, JIP3	Mitogen-activated protein kinase 8-interacting protein 3	MAPK8IP3	23162	ENSG00000138834			Mapk8ip3 (MGI:1353598)
chr16	1770319	1771749	16q13	16p13.3	601817	NME3, NM23H3	Nonmetastatic cells 3, protein expressed in	NME3	4832	ENSG00000103024			Nme3 (MGI:1930182)
chr16	1771888	1773150	16q13-q21	16p13.3	611994	MRPS34, MRPS12, COXPD32	Mitochondrial ribosomal protein S34	MRPS34	65993	ENSG00000074071		Combined oxidative phosphorylation deficiency 32, 617664 (3), Autosomal recessive	Mrps34 (MGI:1930188)
chr16	1773221	1776713	16p13.3	16p13.3	610886	EME2	Essential meiotic endonuclease 1, S. pombe, homolog of, 2	EME2	197342	ENSG00000197774			Eme2 (MGI:1919889)
chr16	1776711	1782579	16p13.3	16p13.3	611659	SPSB3, SSB3	SPRY domain- and SOCS box-containing 3	SPSB3	90864	ENSG00000162032			Spsb3 (MGI:1891471)
chr16	1782922	1789190	16p13.3	16p13.3	610779	NUBP2, CFD1	Nucleotide-binding protein 2	NUBP2	10101	ENSG00000095906			Nubp2 (MGI:1347072)
chr16	1790412	1794907	16p13.3	16p13.3	601489	IGFALS, ALS, ACLSD	Insulin-like growth factor-binding protein, acid-labile subunit	IGFALS	3483	ENSG00000099769		Acid-labile subunit, deficiency of, 615961 (3)	Igfals (MGI:107973)
chr16	1809102	1827193	16p13	16p13.3	138760	HAGH, GLO2	Hydroxyacyl glutathione hydrolase; glyoxalase II	HAGH	3029	ENSG00000063854		[Glyoxalase II deficiency], 614033 (1), Autosomal dominant	Hagh (MGI:95745)
chr16	1827223	1840206	16p13.3	16p13.3	616320	FAHD1, FLJ36880	Fumarylacetoacetate hydrolase domain-containing protein 1	FAHD1	81889	ENSG00000180185			Fahd1 (MGI:1915886)
chr16	1833982	1872177	16p13.3	16p13.3	617670	MEIOB, SPGF22	Meiosis-specific protein with OB domains	MEIOB	254528	ENSG00000162039	mutation identified in one SPGF22 family	?Spermatogenic failure 22, 617706 (3), Autosomal recessive	Meiob (MGI:1922428)
chr16	1938228	1943325	16p13.3	16p13.3	606216	MSRB1, SEPX1, SELX	Methionine sulfoxide reductase B1	MSRB1	51734	ENSG00000198736			Msrb1 (MGI:1351642)
chr16	1944570	1955122	16p13.3	16p13.3	617416	RPL3L	Ribosomal protein L3-like	RPL3L	6123	ENSG00000140986			Rpl3l (MGI:1913461)
chr16	1959515	1961974	16p13.3	16p13.3	603843	NDUFB10	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 10	NDUFB10	4716	ENSG00000140990			Ndufb10 (MGI:1915592)
chr16	1962060	1964825	16p13.3	16p13.3	603624	RPS2	Ribosomal protein S2	RPS2	6187	ENSG00000140988			Rps2 (MGI:105110)
chr16	1972062	1978749	16p13.3	16p13.3	605915	TBL3	Transducin-beta-like 3	TBL3	10607	ENSG00000183751			Tbl3 (MGI:2384863)
chr16	1978916	1984026	16p13	16p13.3	611256	NOXO1	NADPH oxidase organizer 1	NOXO1	124056	ENSG00000196408			Noxo1 (MGI:1919143)
chr16	1984148	1987748	16p13.3-p13.12	16p13.3	600924	GFER, ERV1, ALR	Growth factor, erv1, S. cerevisiae, homolog of (augmenter of liver regeneration)	GFER	2671	ENSG00000127554		Myopathy, mitochondrial progressive, with congenital cataract, hearing loss, and developmental delay, 613076 (3)	Gfer (MGI:107757)
chr16	1989944	1994274	16pter	16p13.3	603927	SYNGR3	Synaptogyrin 3	SYNGR3	9143	ENSG00000127561			Syngr3 (MGI:1341881)
chr16	1997651	2009820	16p13.3	16p13.3	617508	ZNF598	Zinc finger protein 598	ZNF598	90850	ENSG00000167962			Zfp598 (MGI:2670965)
chr16	2019519	2020754	16p13.3	16p13.3	607997	NPW, PPNPW, PPL8	Neuropeptide W	NPW	283869	ENSG00000183971			Npw (MGI:2685781)
chr16	2026867	2039025	16p13.3	16p13.3	606553	SLC9A3R2, SIP1, NHERF2	Solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulatory factor 2	SLC9A3R2	9351	ENSG00000065054			Slc9a3r2 (MGI:1890662)
chr16	2039814	2047871	16p13.3-p13.2	16p13.3	602656	NTHL1, OCTS3, FAP3	Endonuclease III, E. coli, homolog of	NTHL1	4913	ENSG00000065057		Familial adenomatous polyposis 3, 616415 (3), Autosomal recessive	Nthl1 (MGI:1313275)
chr16	2047803	2088719	16p13.3	16p13.3	191092	TSC2, LAM	Tuberin (tuberous sclerosis 2 gene)	TSC2	7249	ENSG00000103197	somatic mutation identified in 1 FCORD2 patient	?Focal cortical dysplasia, type II, somatic, 607341 (3); Lymphangioleiomyomatosis, somatic, 606690 (3); Tuberous sclerosis-2, 613254 (3), Autosomal dominant	Tsc2 (MGI:102548)
chr16	2088707	2135897	16p13.3-p13.12	16p13.3	601313	PKD1	Polycystin-1	PKD1	5310	ENSG00000008710		Polycystic kidney disease 1, 173900 (3), Autosomal dominant	Pkd1 (MGI:97603)
chr16	2090194	2090283	16p13.3	16p13.3	611621	MIR1225, MIRN1225	Micro RNA 1225	MIR1225	100188847				
chr16	2148143	2154164	16p13.3	16p13.3	605455	RAB26	RAS-associated protein RAB26	RAB26	25837	ENSG00000167964			Rab26 (MGI:2443284)
chr16	2155777	2178128	16p13.3	16p13.3	606692	TRAF7, RFWD1	TNF receptor-associated factor 7	TRAF7	84231	ENSG00000131653			Traf7 (MGI:3042141)
chr16	2177182	2196505	16p13.3	16p13.3	612184	CASKIN1, KIAA1306	CASK-interacting protein 1	CASKIN1	57524	ENSG00000167971			Caskin1 (MGI:2442952)
chr16	2204627	2209453	16p13.3	16p13.3	612190	MLST8, GBL, LST8, WAT1, POP3	MTOR-associated protein LST8	MLST8	64223	ENSG00000167965			Mlst8 (MGI:1929514)
chr16	2211601	2214820	16p13.3	16p13.3	172280	PGP	Phosphoglycolate phosphatase	PGP	283871	ENSG00000184207	no recombination with PKD1		Pgp (MGI:1914328)
chr16	2223487	2235741	16p13.3	16p13.3	603022	E4F1, E4F	E4F transcription factor 1	E4F1	1877	ENSG00000167967			E4f1 (MGI:109530)
chr16	2239871	2251600	16p13.3	16p13.3	600305	ECI1, DCI	Enoyl-CoA delta isomerase 1	ECI1	1632	ENSG00000167969			Eci1 (MGI:94871)
chr16	2275877	2340745	16p13.3	16p13.3	601615	ABCA3, ABC3, SMDP3	ATP-binding cassette-3	ABCA3	21	ENSG00000167972		Surfactant metabolism dysfunction, pulmonary, 3, 610921 (3), Autosomal recessive	Abca3 (MGI:1351617)
chr16	2429390	2458857	16p13.3	16p13.3	600227	CCNF, FBX1	Cyclin F	CCNF	899	ENSG00000162063			Ccnf (MGI:102551)
chr16	2471498	2474144	16p13.3	16p13.3	602349	NTN2L	Netrin-2, chicken, homolog of, like	NTN3	4917	ENSG00000162068			Ntn3 (MGI:1341188)
chr16	2475103	2509668	16p13.3	16p13.3	613577	TBC1D24, KIAA1171, FIME, EIEE16, DOORS, DFNB86, DFNA65	TBC1 domain family, member 24	TBC1D24	57465	ENSG00000162065		DOORS syndrome, 220500 (3), Autosomal recessive; Deafness , autosomal recessive 86, 614617 (3), Autosomal recessive; Deafness, autosomal dominant 65, 616044 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 16, 615338 (3), Autosomal recessive; Myoclonic epilepsy, infantile, familial, 605021 (3), Autosomal recessive	Tbc1d24 (MGI:2443456)
chr16	2513725	2520222	16p13.3	16p13.3	108745	ATP6V0C, ATP6L, ATP6C	ATPase, H+ transporting, lysosomal, 16kD, V0 subunit c	ATP6V0C	527	ENSG00000185883			Atp6v0c (MGI:88116)
chr16	2530034	2531407	16p13.3	16p13.3	611113	CEMP1, CP23	Cementum protein 1	CEMP1	752014	ENSG00000205923			
chr16	2537963	2603189	16p13.3	16p13.3	605213	PDPK1, PDK1	3-phosphoinositide-dependent protein kinase 1	PDPK1	5170	ENSG00000140992			Pdpk1 (MGI:1338068)
chr16	2682493	2709029	16p13.3	16p13.3	611285	KCTD5	Potassium channel tetramerization domain-containing protein 5	KCTD5	54442	ENSG00000167977			Kctd5 (MGI:1916509)
chr16	2750902	2771411	Chr.16	16p13.3	606032	SRRM2, SRM300, KIAA0324	Serine/arginine repetitive matrix 2 (ser/arg-rich splicing factor-related nuclear matrix protein, 300kD)	SRRM2	23524	ENSG00000167978			
chr16	2771413	2777295	16p13.3	16p13.3	600787	TCEB2, ELOB	Transcription elongation factor B, polypeptide 2	ELOB	6923	ENSG00000103363			
chr16	2783952	2787758	16p13.3	16p13.3	613797	PRSS33, EOS	Protease, serine, 33	PRSS33	260429	ENSG00000103355			Prss33 (MGI:2661234)
chr16	2817162	2821721	16p13.3	16p13.3	608159	PRSS21, ESP1	Protease, serine, 21 (testisin)	PRSS21	10942	ENSG00000007038			Prss21 (MGI:1916698)
chr16	2852726	2858629	16p13.3	16p13.3	609343	PRSS22	Protease, serine, 22	PRSS22	64063	ENSG00000005001			Prss22 (MGI:1918085)
chr16	2964215	2968382	16p13.3	16p13.3	609899	KREMEN2, KRM2	Kringle domain-containing transmembrane protein 2	KREMEN2	79412	ENSG00000131650			Kremen2 (MGI:1920266)
chr16	2969244	2973488	16p13.3	16p13.3	614578	PAQR4	Progestin and ADIPOQ receptor family, member 4	PAQR4	124222	ENSG00000162073			Paqr4 (MGI:1923748)
chr16	2972790	2980538	16p13.3	16p13.3	602474	PKMYT1, MYT1	Protein kinase, membrane-associated tyrosine/threonine, 1	PKMYT1	9088	ENSG00000127564			Pkmyt1 (MGI:2137630)
chr16	3012455	3014504	16p13.3	16p13.3	615799	CLDN9	Claudin 9	CLDN9	9080	ENSG00000213937			Cldn9 (MGI:1913100)
chr16	3014711	3018186	16p13.3	16p13.3	615798	CLDN6	Claudin 6	CLDN6	9074	ENSG00000184697			Cldn6 (MGI:1859284)
chr16	3020311	3022382	16p13.3	16p13.3	605914	TNFRSF12A, FN14, TWEAKR	Tumor necrosis factor receptor superfamily, member 12A	TNFRSF12A	51330	ENSG00000006327			Tnfrsf12a (MGI:1351484)
chr16	3024018	3027754	16p13.3	16p13.3	615403	THOC6, FSAP35, BBIS	THO complex subunit 6	THOC6	79228	ENSG00000131652		Beaulieu-Boycott-Innes syndrome, 613680 (3), Autosomal recessive	Thoc6 (MGI:2677480)
chr16	3027709	3036984	16p13.3	16p13.3	617003	BICDL2, BICDR2, CCDC64B	BICD family-like cargo adaptor 2	BICDL2	146439	ENSG00000162069			Bicdl2 (MGI:2388267)
chr16	3045962	3060728	16p13.3	16p13.3	608482	MMP25, MMP20A	Matrix metalloproteinase 25	MMP25	64386	ENSG00000008516			Mmp25 (MGI:2443938)
chr16	3065311	3069818	16p13.3	16p13.3	606001	IL32, NK4	Interleukin 32	IL32	9235	ENSG00000008517			
chr16	3112561	3120516	16p13.3	16p13.3	603436	ZNF205, ZNF210	Zinc finger protein-205	ZNF205	7755	ENSG00000122386			Zfp13 (MGI:99159)
chr16	3135055	3142803	16p13.3	16p13.3	608387	ZNF213, CR53	Zinc finger protein 213	ZNF213	7760	ENSG00000085644			Zfp213 (MGI:3053094)
chr16	3188203	3206558	16p13	16p13.3	603232	OR1F1, OLFMF	Olfactory receptor, family 1, subfamily F, member 1	OR1F1	4992	ENSG00000168124			
chr16	3222324	3236220	16p13	16p13.3	603231	ZNF200	Zinc finger protein-200	ZNF200	7752	ENSG00000010539			
chr16	3242027	3256775	16p13	16p13.3	608107	MEFV, MEF, FMF	Pyrin (marenostrin)	MEFV	4210	ENSG00000103313	between D16S80 and D16S283	Familial Mediterranean fever, AD, 134610 (3), Autosomal dominant; Familial Mediterranean fever, AR, 249100 (3), Autosomal recessive	Mefv (MGI:1859396)
chr16	3283182	3301648	16p13.3	16p13.3	604191	ZNF263	Zinc finger protein 263	ZNF263	10127	ENSG00000006194			Zfp263 (MGI:1921370)
chr16	3298807	3305438	16p13	16p13.3	612969	TIGD7, SANCHO	Tigger transposable element-derived gene 7	TIGD7	91151	ENSG00000140993			
chr16	3305405	3322998	16pter-p11	16p13.3	601473	ZNF75A	Zinc finger protein-75A	ZNF75A	7627	ENSG00000162086			
chr16	3401189	3409363	16p13.3	16p13.3	603900	ZNF174	Zinc finger protein-174	ZNF174	7727	ENSG00000103343			Zfp174 (MGI:2686600)
chr16	3432421	3443536	16p13.3	16p13.3	614685	ZNF597	Zinc finger protein 597	ZNF597	146434	ENSG00000167981			Zfp597 (MGI:1918313)
chr16	3443610	3486962	16p13.3	16p13.3	614246	NAA60, NAT15	N-alpha-acetyltransferase 60, NatF catalytic subunit	NAA60	79903	ENSG00000122390			Naa60 (MGI:1922013)
chr16	3500930	3539047	16p13	16p13.3	616787	CLUAP1, QILIN, FAP22, KIAA0643	Clusterin-associated protein 1	CLUAP1	23059	ENSG00000103351			Cluap1 (MGI:1924029)
chr16	3539032	3577781	16p13.3	16p13.3	615648	NLRC3	NLR family, Caspase recruitment domain-containing 3	NLRC3	197358	ENSG00000167984			Nlrc3 (MGI:2444070)
chr16	3579652	3611638	16p13.3	16p13.3	613278	SLX4, BTBD12, MUS312, KIAA1784, KIAA1987, FANCP	Slx4, S. cerevisiae, homolog of	SLX4	84464	ENSG00000188827		Fanconi anemia, complementation group P, 613951 (3), Autosomal recessive	Slx4 (MGI:106299)
chr16	3611736	3665471	16p13.3	16p13.3	125505	DNASE1, DNL1	Deoxyribonuclease I	DNASE1	1773	ENSG00000213918		{Systemic lupus erythematosus, susceptibility to}, 152700 (3), Autosomal dominant	Dnase1 (MGI:103157)
chr16	3658036	3717596	16p13.3	16p13.3	606219	TRAP1, HSP75, HSP90L	Tumor necrosis factor receptor-associated protein 1	TRAP1	10131	ENSG00000126602			Trap1 (MGI:1915265)
chr16	3725053	3880726	16p13.3	16p13.3	600140	CREBBP, CBP, RSTS1	CREB binding protein	CREBBP	1387	ENSG00000005339	fusion partner with MORF in AML; fusion partner with MLL in therapy-related acute leukemia; fusion partner with MOZ in AML	Rubinstein-Taybi syndrome 1, 180849 (3), Autosomal dominant	Crebbp (MGI:1098280)
chr16	3953386	4116184	16p13.3	16p13.3	603302	ADCY9	Adenylate cyclase-9	ADCY9	115	ENSG00000162104			Adcy9 (MGI:108450)
chr16	4189373	4242252	16p13.3	16p13.3	604992	SRL	Sarcalumenin	SRL	6345	ENSG00000185739			Srl (MGI:2146620)
chr16	4257185	4272999	16p13	16p13.3	600743	TFAP4	Transcription factor AP-4 (activating enhancer-binding protein 4)	TFAP4	7023	ENSG00000090447			Tfap4 (MGI:103239)
chr16	4314760	4339596	16p13.3	16p13.3	608539	GLIS2, NPHP7	GLIS family zinc finger protein 2	GLIS2	84662	ENSG00000126603		Nephronophthisis 7, 611498 (3)	Glis2 (MGI:1932535)
chr16	4340248	4351398	16p13.3	16p13.3	614336	PAM16, MAGMAS, SMDMDM	Presequence translocase-associated motor 16, S. cerevisiae, homolog of	PAM16	51025	ENSG00000217930		Spondylometaphyseal dysplasia, Megarbane-Dagher-Melike type, 613320 (3), Autosomal recessive	Pam16 (MGI:1913699)
chr16	4354541	4416960	16p13.3	16p13.3	611668	CORO7, POD1, CRN7	Coronin 7	CORO7	79585	ENSG00000262246			Coro7 (MGI:1926135)
chr16	4371847	4383527	16p13.3	16p13.3	608843	VASN	Vasorin	VASN	114990	ENSG00000168140			Vasn (MGI:2177651)
chr16	4425804	4456774	16p13.3	16p13.3	608382	DNAJA3, TID1	DNAJ, E. coli, homolog of, subfamily A, member 3	DNAJA3	9093	ENSG00000103423			Dnaja3 (MGI:1933786)
chr16	4474696	4510346	16p13.3	16p13.3	141251	HMOX2	Heme oxygenase 2	HMOX2	3163	ENSG00000103415			Hmox2 (MGI:109373)
chr16	4510674	4538814	16p13.3	16p13.3	610503	C16orf5	Chromosome 16 open reading frame 5	CDIP1	29965	ENSG00000089486			Cdip1 (MGI:1913876)
chr16	4616492	4690973	16p13.3	16p13.3	607559	MGRN1, KIAA0544	Mahogunin, ring finger 1	MGRN1	23295	ENSG00000102858			Mgrn1 (MGI:2447670)
chr16	4688929	4695858	16p13.3	16p13.3	617338	NUDT16L1, SDOS	Nudix hydrolase 16-like 1	NUDT16L1	84309	ENSG00000168101			Nudt16l1 (MGI:1914161)
chr16	4696509	4734376	16p13.3	16p13.3	617310	ANKS3	Ankyrin repeat and sterile alpha motif domains-containing protein 3	ANKS3	124401	ENSG00000168096			Anks3 (MGI:1919865)
chr16	4777589	4791609	16p13.3	16p13.3	611562	SEPT12, SPGF10	Septin 12	SEPT12	124404	ENSG00000140623		Spermatogenic failure 10, 614822 (3), Autosomal dominant	Sept12 (MGI:1918339)
chr16	4796961	4802949	16p13.3	16p13.3	614574	ROGDI, KTZS	Rogdi, Drosophila, homolog of	ROGDI	79641	ENSG00000067836		Kohlschutter-Tonz syndrome, 226750 (3), Autosomal recessive	Rogdi (MGI:1913299)
chr16	4803202	4848031	16p13.3	16p13.3	610660	GLYR1, NP60	Glyoxylate reductase 1 homolog	GLYR1	84656	ENSG00000140632			Glyr1 (MGI:1921272)
chr16	4846664	4882400	16p13.3	16p13.3	609771	UBN1	Ubinuclein 1	UBN1	29855	ENSG00000118900			Ubn1 (MGI:1891307)
chr16	4882506	4937134	16p13	16p13.3	602871	PPL	Periplakin	PPL	5493	ENSG00000118898			Ppl (MGI:1194898)
chr16	5024843	5033940	16p13.3	16p13.3	607985	NAGPA, UCE	N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase	NAGPA	51172	ENSG00000103174			Nagpa (MGI:1351598)
chr16	5071808	5087378	16p13.3	16p13.3	605907	ALG1, HMAT1, HMT1, CDG1K	Alg1, yeast, homolog of (beta-1,4 mannosyltransferase)	ALG1	56052	ENSG00000033011		Congenital disorder of glycosylation, type Ik, 608540 (3), Autosomal recessive	Alg1 (MGI:2384774)
chr16	5084297	5097819	16p13.3	16p13.3	615263	EEF2KMT, FAM86A	Eukaryotic elongation factor 2 lysine methyltransferase	EEF2KMT	196483	ENSG00000118894			Eef2kmt (MGI:1917761)
chr16	5239751	7713342	16p13	16p13.3	605104	RBFOX1, 2BP1, FOX1, HRNBP1	RNA-binding protein FOX1, C. elegans, homolog of, 1	RBFOX1	54715	ENSG00000078328			Rbfox1 (MGI:1926224)
chr16	7800000	10400000	16p13.2		616863	DEL16p13.2, C16DELp13.2	Chromosome 16p13.2 deletion syndrome					Chromosome 16p13.2 deletion syndrome, 616863 (4), Autosomal dominant	
chr16	8526548	8590192	16p13.3	16p13.2	611579	TMEM114	Transmembrane protein 114	TMEM114	283953	ENSG00000232258			Tmem114 (MGI:1921970)
chr16	8621639	8673564	16p13.2	16p13.2	615261	METTL22, C16orf68	Methyltransferase-like 22	METTL22	79091				Mettl22 (MGI:2384301)
chr16	8674586	8784574	16p13.3	16p13.2	137150	ABAT, GABAT	4-aminobutyrate aminotransferase	ABAT	18	ENSG00000183044		GABA-transaminase deficiency, 613163 (3), Autosomal recessive	Abat (MGI:2443582)
chr16	8797812	8849336	16p13.3-p13.2	16p13.2	601785	PMM2, CDG1A	Phosphomannomutase 2	PMM2	5373	ENSG00000140650		Congenital disorder of glycosylation, type Ia, 212065 (3), Autosomal recessive	Pmm2 (MGI:1859214)
chr16	8852941	8869011	16p13.2	16p13.2	616885	CARHSP1, CRHSP24	Calcium-regulated heat-stable protein 1	CARHSP1	23589	ENSG00000153048			Carhsp1 (MGI:1196368)
chr16	8892093	8963911	16p13.3	16p13.2	602519	USP7, HAUSP	Ubiquitin-specific protease-7, herpes virus-associated	USP7	7874	ENSG00000187555	previously reported to map to 3p21		Usp7 (MGI:2182061)
chr16	9753403	10182927	16p13	16p13.2	138253	GRIN2A, NMDAR2A, FESD, LKS	Glutamate receptor, ionotropic, N-methyl D-aspartate 2A	GRIN2A	2903	ENSG00000183454		Epilepsy, focal, with speech disorder and with or without mental retardation, 245570 (3), Autosomal dominant	Grin2a (MGI:95820)
chr16	10385998	10483642	16p13.13	16p13.2-p13.1	613645	ATF7IP2, MCAF2	Activating transcription factor 7-interacting protein 2	ATF7IP2	80063	ENSG00000166669			Gm24392,Atf7ip2 (MGI:5454169,MGI:1922579)
chr16	10400000	12500000	16p13.13		617901	DEXI, MYLE	Dexamethasone-induced gene						
chr16	10528421	10580715	16p13.2	16p13.13	602334	EMP2, NPHS10	Epithelial membrane protein 2	EMP2	2013	ENSG00000213853		Nephrotic syndrome, type 10, 615861 (3), Autosomal recessive	Emp2 (MGI:1098726)
chr16	10743163	10769350	16p13.1	16p13.13	600280	NUBP1, NBP	Nucleotide-binding protein 1	NUBP1	4682	ENSG00000103274			Nubp1 (MGI:1347073)
chr16	10866207	10941561	16p13	16p13.13	600005	CIITA, MHC2TA, C2TA	Class II major histocompatibility complex transactivator	CIITA	4261	ENSG00000179583		Bare lymphocyte syndrome, type II, complementation group A, 209920 (3), Autosomal recessive; {Rheumatoid arthritis, susceptibility to}, 180300 (3)	Ciita (MGI:108445)
chr16	10944487	11193271	16p13.13	16p13.13	611303	CLEC16A, KIAA0350	C-type lectin domain family 16, member A	CLEC16A	23274	ENSG00000038532			Clec16a (MGI:1921624)
chr16	11254416	11256181	16p13.2	16p13.13	603597	SOCS1, SSI1, CIS1, CISH1	Suppressor of cytokine signaling 1	SOCS1	8651	ENSG00000185338			Socs1 (MGI:1354910)
chr16	11267856	11269302	16p13.3	16p13.13	190232	TNP2	Transition protein-2 (during histone to protamine replacement)	TNP2	7142	ENSG00000178279	in 13kb segment with PRM1 and PRM2		
chr16	11275635	11276479	16p13.3	16p13.13	182890	PRM2	Sperm protamine P2	PRM2	5620	ENSG00000122304	in same 4.8kb fragment as PRM2		
chr16	11280835	11281334	16p13.3	16p13.13	182880	PRM1	Sperm protamine P1	PRM1	5619	ENSG00000175646	16q21 = conflicting localization		
chr16	11345437	11351762	16p13.13	16p13.13	612426	C16orf75, RMI2, BLAP18	BLM-associated protein, 18kD	RMI2	116028	ENSG00000175643			Rmi2 (MGI:2685383)
chr16	11547721	11636376	16p13.3-p12	16p13.13	603795	LITAF, CMT1C	LPS-induced TNFA factor	LITAF	9516	ENSG00000189067		Charcot-Marie-Tooth disease, type 1C, 601098 (3), Autosomal dominant	Litaf (MGI:1929512)
chr16	11668432	11679158	16p13	16p13.13	603032	SNN	Stannin	SNN	8303	ENSG00000184602			Snn (MGI:1276549)
chr16	11679079	11742877	16p13.13	16p13.13	617792	TXNDC11, EFP1	Thioredoxin domain-containing protein 11	TXNDC11	51061	ENSG00000153066			Txndc11 (MGI:1923620)
chr16	11819829	11828831	16p13.13	16p13.13	613746	BCAR4	Breast cancer antiestrogen resistance 4	BCAR4	400500				
chr16	11834195	11851584	16p13	16p13.13	615874	RSL1D1, CSIG, PBK1	Ribosomal L1 domain-containing protein 1	RSL1D1	26156	ENSG00000171490			Rsl1d1 (MGI:1913659)
chr16	11868127	11916661	16p13.1	16p13.13	139259	GSPT1	G1 to S phase transition-1	GSPT1	2935	ENSG00000103342			Gspt1 (MGI:1316728)
chr16	11965106	11968067	16p13.1	16p13.13	109545	TNFRSF17, BCMA	Tumor necrosis factor receptor superfamily, member 17 (B-cell maturation factor)	TNFRSF17	608	ENSG00000048462			Tnfrsf17 (MGI:1343050)
chr16	12659798	12803886	16p13.12	16p13.12	615603	CPPED1	Calcineurin-like phosphoesterase domain-containing protein 1	CPPED1	55313	ENSG00000103381			Cpped1 (MGI:2443300)
chr16	12901618	13563426	16p13.12	16p13.12	613346	SHISA9, CKAMP44	Shisa family, member 9	SHISA9	729993	ENSG00000237515			Shisa9 (MGI:1919805)
chr16	13920136	13952347	16p13.3-p13.13	16p13.12	133520	ERCC4, XPF, FANCQ, XFEPS	Excision-repair, complementing defective, in Chinese hamster, number 4	ERCC4	2072	ENSG00000175595	mutation identified in 1 XFEPS patient	Fanconi anemia, complementation group Q, 615272 (3), Autosomal recessive; ?XFE progeroid syndrome, 610965 (3); Xeroderma pigmentosum, group F, 278760 (3), Autosomal recessive; Xeroderma pigmentosum, type F/Cockayne syndrome, 278760 (3), Autosomal recessive	Ercc4 (MGI:1354163)
chr16	14071071	14266778	16p13.1	16p13.12	609463	MKL2, MRTFB	MKL1/myocardin-like 2	MKL2	57496	ENSG00000186260			Mkl2 (MGI:3050795)
chr16	14303966	14304048	16p13.12	16p13.12	614734	MIR193B	Micro RNA 193B	MIR193B	574455				
chr16	14309284	14309370	16p13.12	16p13.12	614735	MIR365A	Micro RNA 365A	MIR365A	100126355				
chr16	14435699	14630285	16p13.12	16p13.12	604212	PARN, DAN, DKCB6, PFBMFT4	Polyadenylate-specific ribonuclease	PARN	5073	ENSG00000140694		Dyskeratosis congenita, autosomal recessive 6, 616353 (3), Autosomal recessive; Pulmonary fibrosis and/or bone marrow failure, telomere-related, 4, 616371 (3), Autosomal dominant	Parn (MGI:1921358)
chr16	14672547	14694661	16p13.1-p12	16p13.12	603603	PLA2G10, SPLA2, GXSPLA2	Phospholipase A2, group X	PLA2G10	8399	ENSG00000069764			Pla2g10 (MGI:1347522)
chr16	14833785	14896156	16p13.11	16p13.11	609157	NOMO1	Nodal modulator 1	NOMO1	23420	ENSG00000103512			Nomo1 (MGI:2385850)
chr16	14937442	14952059	16p13.1	16p13.11	606406	NPIP	Nuclear pore complex-interacting protein	NPIPA1	9284	ENSG00000183426			
chr16	14974590	15153342	16p13.11	16p13.11	614244	PDXDC1, KIAA0251	Pyridoxal-dependent decarboxylase domain-containing protein 1	PDXDC1	23042	ENSG00000179889			Pdxdc1 (MGI:1920909)
chr16	15037852	15056078	16p13.11	16p13.11	615367	NTAN1	N-terminal asparagine amidase	NTAN1	123803	ENSG00000157045			Ntan1 (MGI:108471)
chr16	15060021	15094334	16p12	16p13.11	605121	RRN3, TIFIA	RRN3, S. cerevisiae, homolog of	RRN3	54700	ENSG00000085721			Rrn3 (MGI:1925255)
chr16	15594368	15643165	16p13.13	16p13.11	614593	MARF1, KIAA0430, LKAP	Meiosis regulator and mRNA stability factor 1	MARF1	9665	ENSG00000166783			Marf1 (MGI:2444505)
chr16	15643266	15726352	16p13.1	16p13.11	609449	NDE1, NUDE, LIS4, MHAC	nudE neurodevelopment protein 1	NDE1	54820	ENSG00000072864	mutation identified in 1 MHAC family	Lissencephaly 4 (with microcephaly), 614019 (3), Autosomal recessive; ?Microhydranencephaly, 605013 (3), Autosomal recessive	Nde1 (MGI:1914453)
chr16	15703134	15857031	16p13.13-p13.12	16p13.11	160745	MYH11, AAT4, FAA4	Myosin, heavy polypeptide-11, smooth muscle	MYH11	4629	ENSG00000133392	fused with CBFB by inversion in acute myelomonocytic leukemia	Aortic aneurysm, familial thoracic 4, 132900 (3), Autosomal dominant	Myh11 (MGI:102643)
chr16	15865718	15888648	16p13.11	16p13.11	617149	FOPNL, FOR20, C16orf63	FGFR1OP N-terminal domain-like protein	FOPNL	123811	ENSG00000133393			Fopnl (MGI:1913336)
chr16	15949576	16143073	16p13.1	16p13.11	158343	ABCC1, MRP1, MRP	ATP-binding cassette, subfamily C, member 1 (multidrug resistance-associated protein 1)	ABCC1	4363	ENSG00000103222			Abcc1 (MGI:102676)
chr16	16149564	16223616	16p13.1	16p13.11	603234	ABCC6, ARA, ABC34, MLP1, PXE, GACI2	ATP-binding cassette, subfamily C, member 6	ABCC6	368	ENSG00000091262		Arterial calcification, generalized, of infancy, 2, 614473 (3), Autosomal recessive; Pseudoxanthoma elasticum, 264800 (3), Autosomal recessive; Pseudoxanthoma elasticum, forme fruste, 177850 (3), Autosomal dominant	Abcc6 (MGI:1351634)
chr16	16232531	16294810	16p13.11	16p13.11	609159	NOMO3	Nodal modulator 3	NOMO3	408050	ENSG00000103226			Nomo1 (MGI:2385850)
chr16	16700000	28500000	16p12		136570	DEL16p12.1, C16DELp12.1	Chromosome 16p12.1 deletion syndrome, 520kb				between 21.85-22.37 Mb	Chromosome 16p12.1 deletion syndrome, 520kb, 136570 (4)	
chr16	16700000	35300000	16p12-p11.2		608105	EPRPDC	Epilepsy, rolandic, with paroxysmal exercise-induced dystonia and writer's cramp		574044		between D16S3133 and D16S3131	Epilepsy, rolandic, with paroxysmal exercise-induced dystonia and writer's cramp, 608105 (2), Autosomal recessive	
chr16	16700000	28500000	16p12		611247	MAFD4, BPAD	Major affective disorder 4		100126593		max lod at D16S769	Major affective disorder 4, 611247 (2)	
chr16	16700000	28500000	16p12.3-p12.1		602594	RP22	Retinitis pigmentosa-22	RP22	6114			Retinitis pigmentosa 22, 602594 (2)	
chr16	17102323	17470880	16p13.1	16p12.3	608124	XYLT1, XT1, DBQD2	Xylosyltransferase 1	XYLT1	64131	ENSG00000103489		Desbuquois dysplasia 2, 615777 (3), Autosomal recessive; {Pseudoxanthoma elasticum, modifier of severity of}, 264800 (3), Autosomal recessive	Xylt1 (MGI:2451073)
chr16	18499923	18562142	16p12.3	16p12.3	609158	NOMO2	Nodal modulator 2	NOMO2	283820	ENSG00000185164			Nomo1 (MGI:2385850)
chr16	18782954	18790333	16p	16p12.3	603674	RPS15A	Ribosomal protein S15a	RPS15A	6210	ENSG00000134419			Rps15a (MGI:2389091)
chr16	18791666	18801677	16p12-p11.2	16p12.3	607669	ARL6IP1, KIAA0069, SPG61	ADP-ribosylation factor-like 6 interacting protein 1	ARL6IP1	23204	ENSG00000170540	mutation identified in 1 family	?Spastic paraplegia 61, autosomal recessive, 615685 (3), Autosomal recessive	Arl6ip1 (MGI:1858943)
chr16	18804852	18926427	16p12	16p12.3	607032	SMG1, LIP, KIAA0421	SMG1, C. elegans, homolog of	SMG1	23049	ENSG00000157106			Smg1 (MGI:1919742)
chr16	18983933	19063941	16p12.3	16p12.3	617198	TMC7	Transmembrane channel-like protein 7	TMC7	79905	ENSG00000170537			Tmc7 (MGI:2443317)
chr16	19067594	19080094	16p13.1-p12	16p12.3	601683	COQ7, CLK1, COQ10D8	COQ7, S. cerevisiae, homolog of	COQ7	10229	ENSG00000167186	mutation identified in 1 COQ10D8 patient	?Coenzyme Q10 deficiency, primary, 8, 616733 (3), Autosomal recessive	Coq7 (MGI:107207)
chr16	19410538	19499112	16p12.3	16p12.3	617197	TMC5	Transmembrane channel-like protein 5	TMC5	79838	ENSG00000103534			Tmc5 (MGI:1921674)
chr16	19501692	19522144	16p12-p11.2	16p12.3	605943	GDE1, MIR16	Glycerophosphodiester phosphodiesterase 1	GDE1	51573	ENSG00000006007			Gde1 (MGI:1891827)
chr16	19523856	19553407	16p12.3	16p12.3	609544	CCP110, CP110, KIAA0419	Centrosomal coiled-coil protein, 110kD	CCP110	9738	ENSG00000103540			Ccp110 (MGI:2141942)
chr16	19858970	19886044	16p12.3-p12.1	16p12.3	605948	GPRC5B, RAIG2	G protein-coupled receptor, family C, group 5, member B	GPRC5B	51704	ENSG00000167191			Gprc5b (MGI:1927596)
chr16	20309573	20327804	16p12.3	16p12.3	602977	GP2	Glycoprotein 2, zymogen granule membrane	GP2	2813	ENSG00000169347	previously assigned to chr.9		Gp2 (MGI:1914383)
chr16	20333050	20356300	16p12.3	16p12.3	191845	UMOD, HNFJ1, FJHN, MCKD2, ADMCKD2	Uromodulin (uromucoid, Tamm-Horsfall glycoprotein)	UMOD	7369	ENSG00000169344		Glomerulocystic kidney disease with hyperuricemia and isosthenuria, 609886 (3); Hyperuricemic nephropathy, familial juvenile 1, 162000 (3), Autosomal dominant; Medullary cystic kidney disease 2, 603860 (3)	Umod (MGI:102674)
chr16	20409533	20441332	16p12.3	16p12.3	614361	ACSM5	Acyl-CoA synthetase medium-chain family, member 5	ACSM5	54988	ENSG00000183549			Acsm5 (MGI:2444086)
chr16	20451460	20487668	16p12.3	16p12.3	614358	ACSM2A	Acyl-CoA synthetase medium-chain family, member 2A	ACSM2A	123876	ENSG00000183747			Acsm2 (MGI:2385289)
chr16	20536757	20576375	16p12.3	16p12.3	614359	ACSM2B, HXMA	Acyl-CoA synthetase medium-chain family, member 2B	ACSM2B	348158	ENSG00000066813			
chr16	20623234	20697787	16p12.3	16p12.3	614357	ACSM1, MACS1	Acyl-CoA synthetase medium-chain family, member 1	ACSM1	116285	ENSG00000166743			Acsm1 (MGI:2152200)
chr16	20730588	20741963	16p12.3	16p12.3	616662	THUMPD1	THUMP domain-containing protein 1	THUMPD1	55623	ENSG00000066654			Thumpd1 (MGI:2444479)
chr16	20742439	20797810	16p13.11	16p12.3	145505	ACSM3, SAH	Acyl-CoA synthetase medium-chain family member 3	ACSM3	6296	ENSG00000005187		{?Hypertension, essential} (1)	Acsm3 (MGI:99538)
chr16	20854924	20900357	16p12.3	16p12.3	616167	DCUN1D3, SCCRO3	DCN1 domain-containing protein 3	DCUN1D3	123879	ENSG00000188215			Dcun1d3 (MGI:2679003)
chr16	20899625	20925005	16p12.3	16p12.3	614709	LYRM1	LYR motif-containing protein 1	LYRM1	57149	ENSG00000102897			Lyrm1 (MGI:1921169)
chr16	20933110	21159536	16p12	16p12.3	603334	DNAH3, DNAHC3B	Dynein, axonemal, heavy chain 3	DNAH3	55567	ENSG00000158486			Dnah3 (MGI:2683040)
chr16	21158348	21180615	16p12.3	16p12.3	611304	TMEM159	Transmembrane protein 159	TMEM159	57146	ENSG00000011638			Tmem159 (MGI:1925752)
chr16	21197449	21214509	16p12	16p12.3-p12.2	182888	ZP2	Zona pellucida glycoprotein 2	ZP2	7783	ENSG00000103310			Zp2 (MGI:99214)
chr16	21200000	35300000	16p12.2-p11.2		613604	DEL16p12.1p11.2, C16DELp12.1p11.2	Chromosome 16p12.2-p11.2 deletion syndrome				17.1-8.7 Mb contiguous gene deletion syndrome	Chromosome 16p12.2-p11.2 deletion syndrome, 613604 (4), Isolated cases	
chr16	21200000	52600000	16p12.2-q12.1		611096	MRT10, MRT20	611096	MRT10	100101425		between rs724466 and rs3901517, rs7197568 and rs71972227	Mental retardation, autosomal recessive 10/20, 611096 (2), Autosomal recessive	
chr16	21233694	21252428	16p12.2	16p12.2	609901	ANKS4B, HARP, FLJ38819	Ankyrin repeat and sterile alpha motif domain-containing protein 4B	ANKS4B	257629	ENSG00000175311			Anks4b (MGI:1919324)
chr16	21258517	21303135	16p13.11-p12.3	16p12.2	123740	CRYM, DFNA40	Crystallin, mu	CRYM	1428	ENSG00000103316		Deafness, autosomal dominant 40, 616357 (3), Autosomal dominant	Crym (MGI:102675)
chr16	21597220	21657472	16p12.2	16p12.2	609388	METTL9, DREV	Methyltransferase-like 9	METTL9	51108	ENSG00000197006			Mettl9 (MGI:1914862)
chr16	21641283	21652665	16p13	16p12.2	606222	IGSF6, DORA	Immunoglobulin superfamily, member 6	IGSF6	10261	ENSG00000140749			Igsf6 (MGI:1891393)
chr16	21664132	21762624	16p12.2	16p12.2	607038	OTOA, DFNB22	Otoancorin	OTOA	146183	ENSG00000155719		Deafness, autosomal recessive 22, 607039 (3), Autosomal recessive	Otoa (MGI:2149209)
chr16	21953063	21983659	16p12	16p12.2	191329	UQCRC2, MC3DN5	Ubiquinol-cytochrome c reductase core protein II	UQCRC2	7385	ENSG00000140740		Mitochondrial complex III deficiency, nuclear type 5, 615160 (3), Autosomal recessive	Uqcrc2 (MGI:1914253)
chr16	22206270	22288744	Chr.16	16p12.2	606968	EEF2K	Elongation factor 2 kinase	EEF2K	29904	ENSG00000103319			Eef2k (MGI:1195261)
chr16	22297374	22335102	16p12.2	16p12.2	617815	POLR3E, SIN, KIAA1452	Polymerase III, RNA, subunit E	POLR3E	55718	ENSG00000058600			Polr3e (MGI:1349452)
chr16	22345935	22374616	16p13.1-p12	16p12.2	117340	CDR2	Cerebellar degeneration-related antigen-2, 62kD	CDR2	1039	ENSG00000140743			Cdr2 (MGI:1100885)
chr16	22814165	22916337	16p12	16p12.2	604056	HS3ST2, 30ST2	Heparan sulfate D-glucosaminyl 3-0-sulfotransferase 2	HS3ST2	9956	ENSG00000122254			Hs3st2 (MGI:1333802)
chr16	23182718	23216878	16p13-p12	16p12.2	600761	SCNN1G, PHA1, BESC3	Sodium channel, nonvoltage-gated 1, gamma	SCNN1G	6340	ENSG00000166828	same 400kb fragment as SCNN1B	Bronchiectasis with or without elevated sweat chloride 3, 613071 (3), Autosomal dominant; Liddle syndrome, 177200 (3), Autosomal dominant; Pseudohypoaldosteronism, type I, 264350 (3), Autosomal recessive	Scnn1g (MGI:104695)
chr16	23278230	23381298	16p13-p12	16p12.2	600760	SCNN1B, BESC1	Sodium channel, nonvoltage-gated 1, beta	SCNN1B	6338	ENSG00000168447		Bronchiectasis with or without elevated sweat chloride 1, 211400 (3), Autosomal dominant; Liddle syndrome, 177200 (3), Autosomal dominant; Pseudohypoaldosteronism, type I, 264350 (3), Autosomal recessive	Scnn1b (MGI:104696)
chr16	23388492	23453214	16p	16p12.2	606978	COG7, CDG2E	Component of oligomeric golgi complex 7	COG7	91949	ENSG00000168434		Congenital disorder of glycosylation, type IIe, 608779 (3)	Cog7 (MGI:2685013)
chr16	23522012	23557374	16p13.1-p11.2	16p12.2	612799	EARS2, KIAA1970, COXPD12	Glutamyl-tRNA synthetase 2	EARS2	124454	ENSG00000103356		Combined oxidative phosphorylation deficiency 12, 614924 (3), Autosomal recessive	Ears2 (MGI:1914667)
chr16	23581011	23596328	16p12.3-p12.1	16p12.2	603836	NDUFAB1	NADH-ubiquinone oxidoreductase 1, alpha/beta subcomplex, 1	NDUFAB1	4706	ENSG00000004779			Ndufab1,Ndufab1-ps (MGI:1917566,MGI:4936891)
chr16	23603161	23641356	16p12	16p12.2	610355	PALB2, FANCN, PNCA3	Partner and localizer of BRCA2	PALB2	79728	ENSG00000083093		{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant; Fanconi anemia, complementation group N, 610832 (3); {Pancreatic cancer, susceptibility to, 3}, 613348 (3)	Palb2 (MGI:3040695)
chr16	23641365	23676206	16p12.2	16p12.2	612962	DCTN5, p25	Dynactin 5	DCTN5	84516	ENSG00000166847			Dctn5 (MGI:1891689)
chr16	23678771	23690366	16p12.2	16p12.2	602098	PLK1, STPK13	Polo-like kinase 1	PLK1	5347	ENSG00000166851			Plk1 (MGI:97621)
chr16	23690303	23713499	16p12.2	16p12.2	604034	ERN2	Endoplasmic reticulum-to-nucleus signaling 2	ERN2	10595	ENSG00000134398			Ern2 (MGI:1349436)
chr16	23835978	24220610	16p11.2	16p12.2-p12.1	176970	PRKCB1, PKCB	Protein kinase C, beta 1 polypeptide	PRKCB	5579	ENSG00000166501			Prkcb (MGI:97596)
chr16	24200000	35300000	16p12.1-p11.2		157700	MMVP1, MVP, PMV	Mitral valve prolapse, myxomatous 1	MMVP1	50951			Mitral valve prolapse, myxomatous 1, 157700 (2), Autosomal dominant	
chr16	24255552	24362415	16p13.1-p12	16p12.1	606403	CACNG3	Calcium channel, voltage-dependent, gamma-3 subunit	CACNG3	10368	ENSG00000006116			Cacng3 (MGI:1859165)
chr16	24539586	24572862	16p12-p11.2	16p12.1	600938	RBBP6	Retinoblastoma-binding protein-6	RBBP6	5930	ENSG00000122257			Rbbp6 (MGI:894835)
chr16	24610208	24826226	16p12	16p12.1	610739	TNRC6A, GW182, KIAA1460	Trinucleotide repeat-containing gene 6A	TNRC6A	27327	ENSG00000090905			Tnrc6a (MGI:2385292)
chr16	24845862	24911627	16p12.1	16p12.1	610238	SLC5A11, KST1, SGLT6, SMIT2	Solute carrier family 5 (sodium/glucose cotransporter), member 11	SLC5A11	115584	ENSG00000158865			Slc5a11 (MGI:1919316)
chr16	24919383	25015600	16p12.2	16p12.1	608293	ARHGAP17, RICH1	RHO GTPase-activating protein 17	ARHGAP17	55114	ENSG00000140750			Arhgap17 (MGI:1917747)
chr16	25111701	25178230	16p12.3-p12.1	16p12.1	610286	LCMT1	Leucine carboxyl methyltransferase 1	LCMT1	51451	ENSG00000205629			Lcmt1 (MGI:1353593)
chr16	25216916	25228931	16p12-p11.2	16p12.1	603750	AQP8	Aquaporin 8	AQP8	343	ENSG00000103375			Aqp8 (MGI:1195271)
chr16	25692025	26137687	16p11.2	16p12.1	604059	HS3ST4, 30ST4	Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 4	HS3ST4	9951	ENSG00000182601			Hs3st4 (MGI:1333792)
chr16	27203485	27222304	16p12.1	16p12.1	611917	JMJD5	Jumonji domain-containing protein 5	KDM8	79831	ENSG00000155666			Kdm8 (MGI:1924285)
chr16	27224993	27268791	16p12.1	16p12.1	617263	NSMCE1, NSE1	Non-SMC element 1, S. cerevisiae, homolog of	NSMCE1	197370	ENSG00000169189			Nsmce1 (MGI:1914961)
chr16	27313667	27364777	16p12.1-p11.2	16p12.1	147781	IL4R, IL4RA	Interleukin-4 receptor	IL4R	3566	ENSG00000077238		{AIDS, slow progression to}, 609423 (3); {Atopy, susceptibility to}, 147050 (3), Autosomal dominant	Il4ra (MGI:105367)
chr16	27402161	27452042	16p11	16p12.1	605383	IL21R, IMD56	Interleukin 21 receptor	IL21R	50615	ENSG00000103522	fusion partner with BCL6	[IgE, elevated level of], 147050 (3), Autosomal dominant; Immunodeficiency 56, 615207 (3), Autosomal recessive	Il21r (MGI:1890475)
chr16	27460612	27549929	16p12.1	16p12.1	603246	GTF3C1	General transcription factor 3C, polypeptide 1	GTF3C1	2975	ENSG00000077235			Gtf3c1 (MGI:107887)
chr16	27550127	27780370	16p12.1	16p12.1	616650	KATNIP, KIAA0556	Katanin-interacting protein	KIAA0556	23247	ENSG00000047578		Joubert syndrome 26, 616784 (3), Autosomal recessive	D430042O09Rik (MGI:2442760)
chr16	27787528	28063508	16p12.1	16p12.1	617161	GSG1L	GSG1-like protein	GSG1L	146395	ENSG00000169181			Gsg1l (MGI:2685483)
chr16	28097975	28212030	16p12.1	16p12.1	608411	XPO6, EXP6, KIAA0370	Exportin 6	XPO6	23214	ENSG00000169180			Xpo6 (MGI:2429950)
chr16	28466652	28492301	16p12.1	16p12.1	607042	CLN3, BTS	Battenin	CLN3	1201	ENSG00000188603		Ceroid lipofuscinosis, neuronal, 3, 204200 (3), Autosomal recessive	Cln3 (MGI:107537)
chr16	28494648	28498969	16p11.2	16p12.1	605220	APOBR, APOB48R	Apolipoprotein B receptor	APOBR	55911	ENSG00000184730			Apobr (MGI:2176230)
chr16	28499361	28526729	16p11	16p12.1-p11.2	608273	IL27, IL30	Interleukin 27	IL27	246778	ENSG00000197272			Il27 (MGI:2384409)
chr16	28500000	35300000	16p11.2		613444	BMIQ16, DEL16p.11.2, C16DELp11.2	Chromosome 16p11.2 deletion syndrome, 220kb					[Body mass index QTL16], 613444 (4); Chromosome 16p11.2 deletion syndrome, 220kb, 613444 (4)	
chr16	28500000	35300000	16p11.2		611913	DEL16p11.2, C16DELp11.2, AUTS14A	Chromosome 16p11.2 deletion syndrome, 593kb					{Autism susceptibility 14A}, 611913 (2); Chromosome 16p11.2 deletion syndrome, 593kb, 611913 (4)	
chr16	28500000	35300000	16p11.2		614671	DUP16p11.2, C16DUPp11.2, AUTS14B	Chromosome 16p11.2 duplication syndrome					{Autism, susceptibility to, 14B}, 614671 (2); Chromosome 16p11.2 duplication syndrome, 614671 (4)	
chr16	28500000	36800000	16p11		615835	INV16p11	Chromosome 16p11 inversion (0.45Mb)						
chr16	28537340	28539173	16p11.2	16p11.2	614812	NUPR1, COM1, p8	Nuclear protein, transcriptional regulator, 1	NUPR1	26471	ENSG00000176046			Nupr1 (MGI:1891834)
chr16	28553914	28591789	16p11.2	16p11.2	613374	CCDC101, STAF36	Coiled-coil domain-containing protein 101	SGF29	112869	ENSG00000176476			Sgf29 (MGI:1922815)
chr16	28591942	28597085	16p12.1-p11.2	16p11.2	601292	SULT1A2, STP2	Sulfotransferase family 1A, phenol-preferring, member 2	SULT1A2	6799	ENSG00000197165	45kb from STP1		
chr16	28605586	28623585	16p12.1-p11.2	16p11.2	171150	SULT1A1, STP1, STP, PST	Sulfotransferase family 1A, phenol-preferring, member 1	SULT1A1	6817	ENSG00000196502			
chr16	28688557	28735729	16p11.2	16p11.2	603916	EIF3C, EIF3S8	Eukaryotic translation initiation factor 3, subunit C	EIF3C	8663	ENSG00000184110			Eif3c (MGI:1926966)
chr16	28823047	28837236	16p11	16p11.2	607931	ATXN2L, A2D	Ataxin 2-like	ATXN2L	11273	ENSG00000168488	pseudogene at 7p21		Atxn2l (MGI:2446242)
chr16	28842410	28859561	16p11.2	16p11.2	602389	TUFM, EFTU, COXPD4	Tu translation elongation factor, mitochondrial	TUFM	7284	ENSG00000178952	pseudogene on chr.17	Combined oxidative phosphorylation deficiency 4, 610678 (3), Autosomal recessive	Tufm (MGI:1923686)
chr16	28846599	28874212	16p11.2	16p11.2	608937	SH2B1, SH2B, KIAA1299	SH2B adaptor protein 1	SH2B1	25970	ENSG00000178188			Sh2b1 (MGI:1201407)
chr16	28878487	28904508	16p12	16p11.2	108730	ATP2A1, SERCA1	ATPase, Ca++ transporting, fast-twitch, 1	ATP2A1	487	ENSG00000196296		Brody myopathy, 601003 (3), Autosomal recessive	Atp2a1 (MGI:105058)
chr16	28904420	28925210	16p11.2	16p11.2	611869	RABEP2	RAB GTPase-binding effector protein 2	RABEP2	79874	ENSG00000177548			Rabep2 (MGI:1917564)
chr16	28931734	28939346	16p11.2	16p11.2	107265	CD19, CVID3	CD19 antigen	CD19	930	ENSG00000177455		Immunodeficiency, common variable, 3, 613493 (3), Autosomal recessive	Cd19 (MGI:88319)
chr16	28950991	28966464	16p11.2	16p11.2	614525	NFATC2IP, NIP45	NFATC2-interacting protein	NFATC2IP	84901	ENSG00000176953			Nfatc2ip (MGI:1329015)
chr16	28973998	28984768	16p11.2	16p11.2	612583	SPNS1, SPIN1	Spinster, Drosophila, homolog of, 1	SPNS1	83985	ENSG00000169682			Spns1 (MGI:1920908)
chr16	28984825	28990782	16p11.2	16p11.2	602354	LAT, IMD52	Linker for activation of T cells	LAT	27040	ENSG00000213658		Immunodeficiency 52, 617514 (3), Autosomal recessive	Lat (MGI:1342293)
chr16	29453587	29454963	16p11.2	16p11.2	613182	BOLA2	BolA, E. coli, homolog of, 2	BOLA2	552900	ENSG00000183336			
chr16	29454500	29458223	16p11.2	16p11.2	615823	SLX1B, GIYD2	SLX1 structure-specific endonuclease subunit, S. cerevisiae, homolog of, B	SLX1B	79008	ENSG00000181625			Slx1b (MGI:1915220)
chr16	29459885	29464979	16p11.2	16p11.2	615819	SULT1A4	Sulfotransferase family 1A, cytosolic, phenol-preferring, member 4	SULT1A4	445329	ENSG00000213648			
chr16	29662949	29670875	16p11.2	16p11.2	182160	SPN, LSN, CD43	Sialophorin (leukosialin)	SPN	6693	ENSG00000197471			Spn (MGI:98384)
chr16	29670587	29698698	16p11.2	16p11.2	606248	QPRT	Quinolinate phosphoribosyltransferase	QPRT	23475	ENSG00000103485			Qprt (MGI:1914625)
chr16	29760803	29781647	16p11.2	16p11.2	617311	ZG16, ZG16A, JCLN1	Zymogen granule protein, 16-kD	ZG16	653808	ENSG00000174992			Zg16 (MGI:1916286)
chr16	29790712	29805542	16p11.2	16p11.2	603213	KIF22, KNSL4, KID, OBP, SEMDJL2	Kinesin family member 22	KIF22	3835	ENSG00000079616		Spondyloepimetaphyseal dysplasia with joint laxity, type 2, 603546 (3), Autosomal dominant	Kif22 (MGI:109233)
chr16	29806080	29811182	16p11.2	16p11.2	600999	MAZ, ZF87, PUR1	MYC-associated zinc finger protein	MAZ	4150	ENSG00000103495			Maz (MGI:1338823)
chr16	29812087	29815919	16p11.2	16p11.2	614386	PRRT2, PKC, DYT10, EKD1, BFIS2, BFIC2, ICCA	Proline-rich transmembrane protein 2	PRRT2	112476	ENSG00000167371		Convulsions, familial infantile, with paroxysmal choreoathetosis, 602066 (3), Autosomal dominant; Episodic kinesigenic dyskinesia 1, 128200 (3), Autosomal dominant; Seizures, benign familial infantile, 2, 605751 (3), Autosomal dominant	Prrt2 (MGI:1916267)
chr16	29816206	29822494	16p11.2	16p11.2	612033	PAGR1, C16orf53, PA1	PAXIP1-associated glutamate-rich protein 1	PAGR1	79447	ENSG00000280789			Pagr1a (MGI:1914528)
chr16	29820393	29848038	16p13.1-p11.2	16p11.2	605088	MVP, LRP	Major vault protein, rat, homolog of	MVP	9961	ENSG00000013364			Mvp (MGI:1925638)
chr16	29871158	29899572	16p11.2	16p11.2	616667	SEZ6L2, BSRPA	SEZ6-like protein 2	SEZ6L2	26470	ENSG00000174938			Sez6l2 (MGI:2385295)
chr16	29906334	29926231	16p11.2	16p11.2	608947	KCTD13, POLDIP1, FKSG86	Potassium channel tetramerization domain-containing 13	KCTD13	253980	ENSG00000174943			Kctd13 (MGI:1923739)
chr16	29973866	29992260	16p13.1-p12	16p11.2	613199	TAOK2, TAO2, KIAA0881, PSK, PSK1	Tao kinase 2	TAOK2	9344	ENSG00000149930			Taok2 (MGI:1915919)
chr16	29992320	29996095	16p11.2	16p11.2	603365	HIRIP3	HIRA-interacting protein 3	HIRIP3	8479	ENSG00000149929			Hirip3 (MGI:2142364)
chr16	30005513	30023279	16p11.2	16p11.2	604567	DOC2A	Double C2-like domain-containing protein, alpha	DOC2A	8448	ENSG00000149927			Doc2a (MGI:109446)
chr16	30024422	30053025	16p11.2	16p11.2	615175	FAM57B	Family with sequence similarity 57, member B	FAM57B	83723	ENSG00000149926			Fam57b (MGI:1916202)
chr16	30053089	30070419	16p11.2	16p11.2	103850	ALDOA, GSD12	Aldolase A, fructose-bisphosphatase	ALDOA	226	ENSG00000149925	pseudogenes on 3 and 10	Glycogen storage disease XII, 611881 (3), Autosomal recessive	Aldoa (MGI:87994)
chr16	30075975	30085376	16p12-p11	16p11.2	602035	PPP4C, PP4, PPX	Protein phosphatase 4, catalytic subunit	PPP4C	5531	ENSG00000149923			Ppp4c (MGI:1891763)
chr16	30085792	30091926	16p11.2	16p11.2	602427	TBX6, SCDO5	T-box 6	TBX6	6911	ENSG00000149922		Spondylocostal dysostosis 5, 122600 (3), Autosomal recessive, Autosomal dominant	Tbx6 (MGI:102539)
chr16	30092313	30096215	16p11.2	16p11.2	609724	YPEL3	Yippee-like 3	YPEL3	83719	ENSG00000090238			Ypel3 (MGI:1913340)
chr16	30104809	30113556	16p11.2	16p11.2	616318	GDPD3, GDE7	Glycerophosphodiester phosphodiesterase domain-containing protein 3	GDPD3	79153	ENSG00000102886			Gdpd3 (MGI:1915866)
chr16	30114104	30123308	16p11.2	16p11.2	601795	MAPK3, PRKM3, ERK1	Mitogen-activated protein kinase 3	MAPK3	5595	ENSG00000102882			Mapk3 (MGI:1346859)
chr16	30183409	30189075	16p11.2	16p11.2	605000	CORO1A, TACO, CLIPINA, IMD8	Coronin 1A	CORO1A	11151	ENSG00000102879		Immunodeficiency 8, 615401 (3), Autosomal recessive	Coro1a (MGI:1345961)
chr16	30193842	30197565	16p11.2	16p11.2	615822	SLX1A, GIYD1	SLX1 structure-specific endonuclease subunit, S. cerevisiae, homolog of, A	SLX1A	548593	ENSG00000132207			Slx1b (MGI:1915220)
chr16	30199227	30204328	16p11.2	16p11.2	600641	SULT1A3, STM	Sulfotransferase family 1A, phenol-preferring, member 3	SULT1A3	6818	ENSG00000261052			
chr16	30350765	30355360	16p11.2	16p11.2	604470	CD2BP2	CD2 antigen-binding protein 2	CD2BP2	10421	ENSG00000169217			Cd2bp2 (MGI:1917483)
chr16	30357100	30370465	16p11.2	16p11.2	613620	TBC1D10B	TBC1 domain family, member 10B	TBC1D10B	26000	ENSG00000169221			Tbc1d10b (MGI:1915699)
chr16	30370933	30377990	16p11.2	16p11.2	617378	MYLPF, MLC2B, MRLC2, MYL11	Myosin light chain, phosphorylatable, fast skeletal muscle	MYLPF	29895	ENSG00000180209			Mylpf (MGI:97273)
chr16	30378132	30382849	16p11.2	16p11.2	612897	SEPT1, DIFF6	Septin 1	SEPT1	1731	ENSG00000180096			Sept1 (MGI:1858916)
chr16	30423697	30430051	16p11.2	16p11.2	615840	DCTPP1	dCTP pyrophosphatase 1	DCTPP1	79077	ENSG00000179958			Dctpp1 (MGI:1913672)
chr16	30443624	30445974	16p11.2	16p11.2	606218	SEPHS2, SPS2	Selenophosphate synthetase 2	SEPHS2	22928	ENSG00000179918			Sephs2 (MGI:108388)
chr16	30472661	30523184	16p11.2	16p11.2	153370	ITGAL, CD11A, LFA1A	Integrin, alpha-L (antigen CD11A (p180), lymphocyte function-associated antigen-1, alpha polypeptide)	ITGAL	3683	ENSG00000005844			Itgal (MGI:96606)
chr16	30650701	30656439	16p11.2	16p11.2	617423	PRR14	Proline-rich protein 14	PRR14	78994	ENSG00000156858			Prr14 (MGI:2384565)
chr16	30658430	30670809	16p11.2	16p11.2	608601	FBRS, FBS1	Fibrosin	FBRS	64319	ENSG00000156860			Fbrs (MGI:104648)
chr16	30699140	30740128	16p11.2	16p11.2	611421	SRCAP, SWR1, KIAA0309, FLHS	SNF2-related CBP activator protein	SRCAP	10847	ENSG00000080603		Floating-Harbor syndrome, 136140 (3), Autosomal dominant	Srcap (MGI:2444036)
chr16	30748298	30761175	16p12.1-p11.2	16p11.2	172471	PHKG2, GSD9C	Phosphorylase kinase, gamma 2 (testis/liver)	PHKG2	5261	ENSG00000156873		Cirrhosis due to liver phosphorylase kinase deficiency (3); Glycogen storage disease IXc, 613027 (3), Autosomal recessive	Phkg2 (MGI:1916211)
chr16	30761611	30800230	16p11.2	16p11.2	607700	RNF40, BRE1B, RBP95, KIAA0661	Ring finger protein 40	RNF40	9810	ENSG00000103549			Rnf40 (MGI:2142048)
chr16	30834040	30894715	16p11	16p11.2	605847	BCL7C	B-cell CLL/lymphoma 7C	BCL7C	9274	ENSG00000099385			Bcl7c (MGI:1332237)
chr16	30895823	30903559	16p11.2-p11.1	16p11.2	600435	CTF1, CT1	Cardiotrophin 1	CTF1	1489	ENSG00000150281			Ctf1 (MGI:105115)
chr16	30923054	30948782	16p11.2	16p11.2	609085	FBXL19, FBL19	F-box and leucine-rich repeat protein 19	FBXL19	54620	ENSG00000099364			Fbxl19 (MGI:3039600)
chr16	30949083	30954937	16p11.2	16p11.2	610930	ORAI3, TMEM142C	ORAI calcium release-activated calcium modulator 3	ORAI3	93129	ENSG00000175938			Orai3 (MGI:3039586)
chr16	30956617	30984663	16p11.2	16p11.2	611052	SETD1A, SET1A, SET1, KIAA0339	SET domain-containing protein 1A	SETD1A	9739	ENSG00000099381			Setd1a (MGI:2446244)
chr16	30985188	30989151	16p12-p11.2	16p11.2	607764	HSD3B7, CBAS1	3-beta-hydroxy-delta-5-C27-steroid oxidoreductase	HSD3B7	80270	ENSG00000099377		Bile acid synthesis defect, congenital, 1, 607765 (3), Autosomal recessive	Hsd3b7 (MGI:2141879)
chr16	30989255	31010637	16p11.2	16p11.2	601485	STX1B, GEFSP9	Syntaxin 1B	STX1B	112755	ENSG00000099365		Generalized epilepsy with febrile seizures plus, type 9, 616172 (3), Autosomal dominant	Stx1b (MGI:1930705)
chr16	31033094	31040167	16p11.2	16p11.2	186591	STX4, STX4A	Syntaxin 4	STX4	6810	ENSG00000103496			Stx4a (MGI:893577)
chr16	31060842	31074319	16p11.2	16p11.2	617103	ZNF668	Zinc finger protein 668	ZNF668	79759	ENSG00000167394			Zfp668 (MGI:2442943)
chr16	31083423	31089651	16p11.2	16p11.2	610561	PRSS53, POL3S	Protease, serine, 53	PRSS53	339105	ENSG00000151006			Prss53 (MGI:2652890)
chr16	31090841	31094998	16p11.2	16p11.2	608547	VKORC1, VKOR, VKCFD2, FLJ00289	Vitamin K epoxide reductase complex, subunit 1	VKORC1	79001	ENSG00000167397		Vitamin K-dependent clotting factors, combined deficiency of, 2, 607473 (3); Warfarin resistance, 122700 (3), Autosomal dominant	Vkorc1 (MGI:106442)
chr16	31108293	31117650	16p11.2	16p11.2	614901	BCKDK, BDK, BCKDKD	Branched-chain alpha-keto acid dehydrogenase kinase	BCKDK	10295	ENSG00000103507		Branched-chain ketoacid dehydrogenase kinase deficiency, 614923 (3)	Bckdk (MGI:1276121)
chr16	31117663	31131392	16p11.2	16p11.2	609912	KAT8, MYST1, MOF	K(lysine) acetyltransferase 8	KAT8	84148	ENSG00000103510			Kat8 (MGI:1915023)
chr16	31131432	31135761	16p11.2	16p11.2	600823	PRSS8	Protease, serine, 8 (prostasin)	PRSS8	5652	ENSG00000052344			Prss8 (MGI:1923810)
chr16	31138925	31150093	16p11.2	16p11.2	610560	PRSS36	Protease, serine, 36	PRSS36	146547	ENSG00000178226			Prss36 (MGI:1924863)
chr16	31180109	31194870	16p11.2	16p11.2	137070	FUS, TLS, ALS6, ETM4	Fusion, derived from 12-16 translocation, malignant liposarcoma	FUS	2521	ENSG00000089280	fused with DDIT3 in myxoid liposarcoma, with ERG in leukemia, and ATF1 in angiomatoid fibrous histiocytoma	Amyotrophic lateral sclerosis 6, with or without frontotemporal dementia, 608030 (3); Essential tremor, hereditary, 4, 614782 (3), Autosomal dominant	
chr16	31201485	31202775	16p12-p11.2	16p11.2	606838	PYCARD, TMS1, ASC	PYD and CARD domain-containing protein (target of methylation-induced silencing 1)	PYCARD	29108	ENSG00000103490			Pycard (MGI:1931465)
chr16	31214020	31225655	16p11.2	16p11.2	613288	TRIM72, MG53	Tripartite motif-containing protein 72	TRIM72	493829	ENSG00000177238			Trim72 (MGI:3612190)
chr16	31215961	31217092	16p12.1	16p11.2	615700	PYDC1, POP1, PYC1, ASC2	Pyrin domain-containing protein 1	PYDC1	260434	ENSG00000169900			
chr16	31259966	31332891	16p11.2	16p11.2	120980	ITGAM, CR3A, CD11B, MAC1A, SLEB6	Integrin, alpha-M (complement component receptor-3, alpha; antigen CD11B (p170); macrophage antigen, alpha polypeptide)	ITGAM	3684	ENSG00000169896	?in same restriction fragment as LFA1A	{Systemic lupus erythematous, association with susceptibility to, 6}, 609939 (3)	Itgam (MGI:96607)
chr16	31355133	31382996	16p11.2	16p11.2	151510	ITGAX, CD11C	Integrin, alpha-X (antigen CD11C (p150), alpha polypeptide)	ITGAX	3687	ENSG00000140678			Itgax (MGI:96609)
chr16	31393222	31426512	16p11.2	16p11.2	602453	ITGAD, CD11D	Integrin, alpha D	ITGAD	3681	ENSG00000156886			Itgad (MGI:3578624)
chr16	31427730	31428427	16p11.2	16p11.2	602009	COX6A2	Cytochrome c oxidase, subunit 6A2	COX6A2	1339	ENSG00000156885			Cox6a2 (MGI:104649)
chr16	31458272	31467166	16p11.2	16p11.2	615549	ARMC5, AIMAH2	Armadillo repeat-containing protein 5	ARMC5	79798	ENSG00000140691		ACTH-independent macronodular adrenal hyperplasia 2, 615954 (3), Autosomal dominant, Somatic mutation	Armc5 (MGI:2384586)
chr16	31472154	31477959	16p11.2	16p11.2	602353	TGFB1I1, ARA55, HIC5	Transforming growth factor, beta-1-induced 1	TGFB1I1	7041	ENSG00000140682			Tgfb1i1 (MGI:102784)
chr16	31482534	31490769	16p11.2	16p11.2	182381	SLC5A2, SGLT2	Solute carrier family 5 (sodium/glucose cotransporter), member 2	SLC5A2	6524	ENSG00000140675		Renal glucosuria, 233100 (3), Autosomal recessive, Autosomal dominant	Slc5a2 (MGI:2181411)
chr16	31527851	31528803	16p11.2	16p11.2	605821	ERAF, EDRF, AHSP	Erythroid-associated factor (alpha-hemoglobin stabilizing protein)	AHSP	51327	ENSG00000169877			
chr16	31873757	31917950	Chr.16	16p11.2	604752	ZNF267, HZF2	Zinc finger protein-167	ZNF267	10308	ENSG00000185947			D3Ertd254e (MGI:1098769)
chr16	32673527	32678620	16p13	16p11.2	617482	TP53TG3	TP53 target gene 3	TP53TG3	24150	ENSG00000183632			
chr16	36800000	74100000	16q11-q22		610753	AA2	Alopecia areata 2		100034703		max lod at D16S415	Alopecia areata 2, 610753 (2), Autosomal recessive, Autosomal dominant	
chr16	36800000	74100000	16q11.1-q22		126900	DUPC1	Dupuytren contracture 1		780895		max lod at D16S415	Dupuytren contracture 1, 126900 (2), Autosomal dominant	
chr16	36800000	90338345	16q		610707	PSORS8	Psoriasis susceptibility 8	PSORS8	140454		proximal to D16S3034	{Psoriasis susceptibility 8}, 610707 (2)	
chr16	36800000	90338345	16q		606711	SLI1	Specific language impairment QTL, 1		171013			Specific language impairment QTL, 1, 606711 (2), Multifactorial	
chr16	36800000	90338345	16q		194090	WT3	Wilms tumor-3		8136		loss of heterozygosity	Wilms tumor, type 3, 194090 (2), Autosomal dominant	
chr16	46578590	46621401	16q11.2	16q11.2	611027	SHCBP1, PAL	SHC SH2 domain-binding protein 1	SHCBP1	79801	ENSG00000171241			Shcbp1 (MGI:1338802)
chr16	46657978	46689231	16q11.2	16q11.2	601501	VPS35, MEM3, PARK17	Vacuolar protein sorting 35, yeast, homolog of	VPS35	55737	ENSG00000069329		{Parkinson disease 17}, 614203 (3), Autosomal dominant	Vps35 (MGI:1890467)
chr16	46689645	46698393	16q12	16q11.2	607213	ORC6, ORC6L	Origin recognition complex, subunit 6, S. cerevisiae, homolog of	ORC6	23594	ENSG00000091651		Meier-Gorlin syndrome 3, 613803 (3), Autosomal recessive	Orc6 (MGI:1929285)
chr16	46702281	46763245	16q11.2	16q11.2	612147	MYLK3, MLCK	Myosin light chain kinase 3	MYLK3	91807	ENSG00000140795			Mylk3 (MGI:2443063)
chr16	46884379	46931296	16q12.1	16q11.2	138210	GPT2, ALT2, MRT49	Glutamate pyruvate transaminase 2	GPT2	84706	ENSG00000166123		Mental retardation, autosomal recessive 49, 616281 (3), Autosomal recessive	Gpt2 (MGI:1915391)
chr16	46955361	46973713	16q12.1	16q11.2	611322	DNAJA2, DJ3, CPR3	DNAJ/HSP40 homolog, subfamily A, member 2	DNAJA2	10294	ENSG00000069345			Dnaja2 (MGI:1931882)
chr16	47000000	52600000	16q12.1		602639	STHAG2, HYD2	Tooth agenesis, selective, 2	HYD2	8137			Tooth agenesis, selective, 2, 602639 (2)	
chr16	47000000	79200000	16q12.1-q23.1		614668	STUT4	Stuttering, familial persistent, 4		100909385		max lod at D16S3043	Stuttering, familial persistent, 4, 614668 (2)	
chr16	47081519	47144024	16q11	16q12.1	607974	NEOT2	Neuropilin and tolloid like 2	NETO2	81831	ENSG00000171208			Neto2 (MGI:1921763)
chr16	47154386	47461273	16q12.1	16q12.1	611803	ITFG1, TIP	Integrin-alpha FG-gap repeat-containing protein 1	ITFG1	81533	ENSG00000129636			Itfg1 (MGI:106419)
chr16	47461130	47701522	16q12-q13	16q12.1	172490	PHKB	Phosphorylase kinase, beta polypeptide	PHKB	5257	ENSG00000102893		Phosphorylase kinase deficiency of liver and muscle, autosomal recessive, 261750 (3), Autosomal recessive	Phkb (MGI:97578)
chr16	48082972	48146769	16q12.1	16q12.1	607041	ABCC12, MRP9	ATP-binding cassette, subfamily C, member 12	ABCC12	94160	ENSG00000140798			Abcc12 (MGI:2441679)
chr16	48164841	48249972	16q12.1	16q12.1	607040	ABCC11, MRP8, EWWD, WW	ATP-binding cassette, subfamily C, member 11	ABCC11	85320	ENSG00000121270		[Axillary odor, variation in], 117800 (3), Autosomal dominant; [Colostrum secretion, variation in], 117800 (3), Autosomal dominant; [Earwax, wet/dry], 117800 (3), Autosomal dominant	
chr16	48244166	48362998	16q12.1	16q12.1	617774	LONP2, PLON, PSLON	LON peptidase 2, peroxisomal	LONP2	83752	ENSG00000102910			Lonp2 (MGI:1914137)
chr16	48354580	48448434	16q12	16q12.1	602212	SIAH1	Seven in absentia, Drosophila, homolog of, 1	SIAH1	6477	ENSG00000196470			Siah1a (MGI:108064)
chr16	49277916	49281830	16q12.1	16q12.1	600432	CLN1	Precerebellin 1	CBLN1	869	ENSG00000102924			Cbln1 (MGI:88281)
chr16	49487530	49857918	16q12	16q12.1	604557	ZNF423, ZFP423, OAZ, KIAA0760, NPHP14, JBTS19	Zinc finger protein 423	ZNF423	23090	ENSG00000102935		Joubert syndrome 19, 614844 (3), Autosomal recessive, Autosomal dominant; Nephronophthisis 14, 614844 (3), Autosomal recessive, Autosomal dominant	Zfp423 (MGI:1891217)
chr16	50025205	50037087	16q12.1	16q12.1	616869	CNEP1R1, NEP1R1, TMEM188	C-terminal domain nuclear envelope phosphatase 1 regulatory subunit 1	CNEP1R1	255919	ENSG00000205423			Cnep1r1 (MGI:1921981)
chr16	50065940	50107271	16q12.1	16q12.1	614951	HEATR3, SYO1	HEAT repeat-containing protein 3	HEATR3	55027	ENSG00000155393			Heatr3 (MGI:2444491)
chr16	50246137	50318134	16q12-q13	16q12.1	600385	ADCY7	Adenylate cyclase-7	ADCY7	113	ENSG00000121281			Adcy7 (MGI:102891)
chr16	50548329	50649248	16q12	16q12.1	607851	NKD1	Naked cuticle, Drosophila, homolog of, 1	NKD1	85407	ENSG00000140807			Nkd1 (MGI:2135954)
chr16	50666299	50681352	16q12.1	16q12.1	613281	SNX20, SLIC1	Sorting nexin 20	SNX20	124460	ENSG00000167208			Snx20 (MGI:1918857)
chr16	50693586	50733076	16q12	16q12.1	605956	NOD2, CARD15, IBD1, CD, YAOS, BLAUS	Nucleotide-binding oligomerization domain protein 2	NOD2	64127	ENSG00000167207		Blau syndrome, 186580 (3), Autosomal dominant; {Inflammatory bowel disease 1, Crohn disease}, 266600 (3), Multifactorial; {Psoriatic arthritis, susceptibility to}, 607507 (2); {Yao syndrome}, 617321 (3), Multifactorial	Nod2 (MGI:2429397)
chr16	50742025	50801934	16q12-q13	16q12.1	605018	CYLD, CDMT, EAC, MFT1, KIAA0849, BRSS	CYLD gene	CYLD	1540	ENSG00000083799	behaves as tumor suppressor	Brooke-Spiegler syndrome, 605041 (3), Autosomal dominant; Cylindromatosis, familial, 132700 (3), Autosomal dominant; Trichoepithelioma, multiple familial, 1, 601606 (3), Autosomal dominant	Cyld (MGI:1921506)
chr16	51135974	51151271	16q12.1	16q12.1	602218	SALL1, HSAL1, TBS	Sal-like 1	SALL1	6299	ENSG00000103449		Townes-Brocks branchiootorenal-like syndrome, 107480 (3), Autosomal dominant; Townes-Brocks syndrome 1, 107480 (3), Autosomal dominant	Sall1 (MGI:1889585)
chr16	53054981	53327501	16q12.2	16q12.2	616936	CHD9, CREMM, PRIC320, KIAA0308	Chromodomain helicase DNA-binding protein 9	CHD9	80205	ENSG00000177200			Chd9 (MGI:1924001)
chr16	53434419	53491647	16q12.2	16q12.2	180203	RBL2	Retinoblastoma-like 2	RBL2	5934	ENSG00000103479			Rbl2 (MGI:105085)
chr16	53491039	53504410	16q12.2	16q12.2	608483	AKTIP, FTS, FT1	AKT_interacting protein	AKTIP	64400	ENSG00000166971			Aktip (MGI:3693832)
chr16	53599238	53703937	16q12.2	16q12.2	610937	RPGRIP1L, KIAA1005, JBTS7, MKS5	RPGRIP1-like	RPGRIP1L	23322	ENSG00000103494		COACH syndrome, 216360 (3), Autosomal recessive; Joubert syndrome 7, 611560 (3), Autosomal recessive; Meckel syndrome 5, 611561 (3), Autosomal recessive	Rpgrip1l (MGI:1920563)
chr16	53703962	54114466	16q12.2	16q12.2	610966	FTO, GDFD, BMIQ14	Fat mass- and obesity-associated gene	FTO	79068	ENSG00000140718		Growth retardation, developmental delay, facial dysmorphism, 612938 (3), Autosomal recessive; {Obesity, susceptibility to, BMIQ14}, 612460 (3), Autosomal recessive	Fto (MGI:1347093)
chr16	54283299	54286771	16q12.2	16q12.2	612985	IRX3, IRXB1	Iroquois homeobox protein 3	IRX3	79191	ENSG00000177508			Irx3 (MGI:1197522)
chr16	54918862	54929188	16q12.2	16q12.2	615624	CRNDE	Colorectal neoplasia differentially expressed gene, noncoding	CRNDE	643911				
chr16	54931198	54934484	16q11.2-q13	16q12.2	606195	IRX5, HMMS	Iroquois homeo box protein 5	IRX5	10265	ENSG00000176842		Hamamy syndrome, 611174 (3), Autosomal recessive	
chr16	55323759	55330759	16q11.2-q13	16q12.2	606196	IRX6, IRX7	Iroquois homeo box protein 6	IRX6	79190	ENSG00000159387			Irx6 (MGI:1927642)
chr16	55478829	55506690	16q13	16q12.2	120360	MMP2, CLG4A, MONA	Matrix metalloproteinase 2 (gelatinase A, 72kD type IV collagenase)	MMP2	4313	ENSG00000087245	near MT1,2	Multicentric osteolysis, nodulosis, and arthropathy, 259600 (3), Autosomal recessive	Mmp2 (MGI:97009)
chr16	55509000	55586669	16q12.2	16q12.2	612040	LPCAT1, AYTL1	Lysophosphatidylcholine acyltransferase 2	LPCAT2	54947	ENSG00000087253			Lpcat2 (MGI:3606214)
chr16	55655629	55706191	16q12.2	16q12.2	163970	SLC6A2, NAT1, NET1	Solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 2, cocaine- and antidepressant-sensitive	SLC6A2	6530	ENSG00000103546		Orthostatic intolerance, 604715 (3)	Slc6a2 (MGI:1270850)
chr16	55802850	55833162	16q13-q22.1	16q12.2	114835	CES1, SES1	Carboxylesterase 1 (monocyte/macrophage serine esterase 1)	CES1	1066	ENSG00000198848		Carboxylesterase 1 deficiency (3)	Ces1d (MGI:2148202)
chr16	56000000	66600000	16q13-q21		605746	ANMA	Anisomastia		80871			Anisomastia, 605746 (2)	
chr16	56000000	70800000	16q13-q22.1		611031	EKD2	Episodic kinesigenic dyskinesia 2		100124415		max lod at D16S503	Episodic kinesigenic dyskinesia 2, 611031 (2), Autosomal dominant	
chr16	56191338	56357443	16q13	16q13	139311	GNAO1, EIEE17, NEDIM	Guanine nucleotide-binding protein (G protein), alpha-activating activity	GNAO1	2775	ENSG00000087258	close to MT1 in mouse	Epileptic encephalopathy, early infantile, 17, 615473 (3), Autosomal dominant; Neurodevelopmental disorder with involuntary movements, 617493 (3), Autosomal dominant	Gnao1 (MGI:95775)
chr16	56361451	56425537	16q21	16q13	603243	AMFR, GP78	Autocrine motility factor receptor	AMFR	267	ENSG00000159461			Amfr (MGI:1345634)
chr16	56429135	56451348	16q12.2	16q13	604978	NUDT21, CPSF5, CFIM25	Nudix hydrolase 21	NUDT21	11051	ENSG00000167005			Nudt21 (MGI:1915469)
chr16	56451479	56477494	16q13	16q13	615857	OGFOD1	2-oxoglutarate- and iron-dependent oxygenase domain-containing protein 1	OGFOD1	55239	ENSG00000087263			Ogfod1 (MGI:2442978)
chr16	56470402	56520095	16q21	16q13	606151	BBS2, RP74	Bardet-Biedl syndrome 2	BBS2	583	ENSG00000125124		Bardet-Biedl syndrome 2, 615981 (3), Autosomal recessive; Retinitis pigmentosa 74, 616562 (3), Autosomal recessive	Bbs2 (MGI:2135267)
chr16	56565048	56568956	Chr.16	16q13	606206	MT4, MTIV	Metallothionein 4	MT4	84560	ENSG00000102891			
chr16	56589336	56591087	16q13	16q13	139255	MT3, GIFB	Metallothionein 3 (growth inhibitory factor (neurotrophic))	MT3	4504	ENSG00000087250			
chr16	56608532	56609496	16q13	16q13	156360	MT2A, MT2	Metallothionein 2A	MT2A	4502	ENSG00000125148	pseudogene MT2P1 on 4cen-q21		
chr16	56617460	56618817	16q13	16q13	156358	MT1L	Metallothionein 1L	MT1L	4500				
chr16	56625672	56627111	16q13	16q13	156351	MT1E	Metallothionein 1E (functional)	MT1E	4493	ENSG00000169715			
chr16	56632621	56633985	16q13	16q13	156357	MT1K	Metallothionein 1K	MT1M	4499				
chr16	56635738	56637085	16q13	16q13	156356	MT1J	Metallothionein 1J	MT1JP	4498				
chr16	56638665	56640086	16q13	16q13	156350	MT1A	Metallothionein 1A (functional)	MT1A	4489	ENSG00000205362	proximal to FRA16B		
chr16	56651898	56653203	16q13	16q13	156349	MT1B	Metallothionein 1B (functional)	MT1B	4490	ENSG00000169688			
chr16	56657942	56659302	16q13	16q13	156352	MT1F	Metallothionein 1F (functional)	MT1F	4494	ENSG00000198417			
chr16	56666734	56668064	16q13	16q13	156353	MT1G	Metallothionein 1G	MT1G	4495	ENSG00000125144			
chr16	56669813	56671128	16q13	16q13	156354	MT1H	Metallothionein 1H	MT1H	4496	ENSG00000205358			
chr16	56676115	56677876	16q13	16q13	156355	MT1I	Metallothionein 1I	MT1IP	644314				
chr16	56682469	56684195	16q13	16q13	156359	MT1X	Metallothionein 1X	MT1X	4501	ENSG00000187193			
chr16	56730104	56844949	16q13	16q13	614351	NUP93, NIC96, KIAA0095, NPHS12	Nucleoporin, 93kD	NUP93	9688	ENSG00000102900		Nephrotic syndrome, type 12, 616892 (3), Autosomal recessive	Nup93 (MGI:1919055)
chr16	56858517	56858600	16q13	16q13	613395	MIR138-2, MIRN138-2	Micro RNA 138-2	MIR138-2	406930				
chr16	56865206	56915849	16q13	16q13	600968	SLC12A3, NCCT, TSC	Solute carrier family 12 (sodium/potassium/chloride transporters), member 3	SLC12A3	6559	ENSG00000070915		Gitelman syndrome, 263800 (3), Autosomal recessive	Slc12a3 (MGI:108114)
chr16	56932089	56943880	16q12.2-q13	16q13	608070	HERPUD1, MIF1, HERP, KIAA0025	Homocysteine- and endoplasmic reticulum stress-inducible protein, ubiquitin-like domain-containing, 1	HERPUD1	9709	ENSG00000051108			Herpud1 (MGI:1927406)
chr16	56961922	56983843	16q21	16q13	118470	CETP, HDLCQ10	Cholesteryl ester transfer protein, plasma	CETP	1071	ENSG00000087237		[High density lipoprotein cholesterol level QTL 10], 143470 (3), Autosomal dominant; Hyperalphalipoproteinemia, 143470 (3), Autosomal dominant	
chr16	56989484	57083523	16q13	16q13	613537	NLRC5	NLR family, caspase recruitment domain-containing 5	NLRC5	84166	ENSG00000140853			Nlrc5 (MGI:3612191)
chr16	57092542	57147965	16q13	16q13	604206	CPNE2, CPN2	Copine II	CPNE2	221184	ENSG00000140848			Cpne2 (MGI:2387578)
chr16	57152465	57186340	16q13	16q13	617766	FAM192A, NIP30, C16orf94	Family with sequence similarity 192, member A	FAM192A	80011	ENSG00000172775			Fam192a (MGI:1919637)
chr16	57186136	57240474	16q13	16q13	616585	RSPRY1, KIAA1972, SEMDFA	RING finger- and SPRY domain-containing protein 11	RSPRY1	89970	ENSG00000159579		Spondyloepimetaphyseal dysplasia, Faden-Alkuraya type, 616723 (3), Autosomal recessive	Rspry1 (MGI:1914860)
chr16	57245125	57253632	16q13	16q13	615407	ARL2BP, BART	ADP ribosylation factor-like 2-binding protein	ARL2BP	23568	ENSG00000102931		Retinitis pigmentosa with or without situs inversus, 615434 (3), Autosomal recessive	Arl2bp (MGI:1349429)
chr16	57256096	57284671	16q13	16q13	600340	PLLP, PMLP, TM4SF11	Plasma membrane proteolipid (plasmolipin)	PLLP	51090	ENSG00000102934			Pllp (MGI:1915051)
chr16	57300000	74100000	16q21-q22		616648	OPA8	Optic atrophy 8	OPA8	106783499		max lod at D16S752	Optic atrophy 8, 616648 (2), Autosomal dominant	
chr16	57358782	57366189	16q13	16q21	602957	CCL22, SCYA22	Chemokine, C-C motif, ligand 22	CCL22	6367	ENSG00000102962			Ccl22 (MGI:1306779)
chr16	57372457	57385047	16q	16q21	601880	CX3CL1, SCYD1, NTT, NTN	Chemokine, C-X3-C motif, ligand 1 (fractalkine; neurotactin)	CX3CL1	6376	ENSG00000006210			Cx3cl1 (MGI:1097153)
chr16	57396075	57416062	16q13	16q21	601520	CCL17, SCYA17, TARC	Chemokine, C-C motif, ligand 17	CCL17	6361	ENSG00000102970			Ccl17 (MGI:1329039)
chr16	57428168	57447527	16q21	16q21	608943	CIAPIN1	Cytokine-induced apoptosis inhibitor 1 (anamorsin)	CIAPIN1	57019	ENSG00000005194			Ciapin1 (MGI:1922083)
chr16	57447424	57461274	16q13	16q21	612837	COQ9, C16orf49, COQ10D5	Coq9, S. cerevisiae, homolog of	COQ9	57017	ENSG00000088682		Coenzyme Q10 deficiency, primary, 5, 614654 (3), Autosomal recessive	Coq9 (MGI:1915164)
chr16	57462638	57472008	16q13-q21	16q21	180663	POLR2C	Polymerase (RNA) II (DNA directed) polypeptide C, 33kD	POLR2C	5432	ENSG00000102978			Polr2c (MGI:109299)
chr16	57471921	57487138	16q13	16q21	608333	DOK4	Docking protein 4	DOK4	55715	ENSG00000125170			Dok4 (MGI:2148865)
chr16	57529338	57578181	16q21	16q21	616965	ADGRG5, GPR114	Adhesion G protein-coupled receptor G5	ADGRG5	221188	ENSG00000159618			Adgrg5 (MGI:2685955)
chr16	57619534	57665038	16q13	16q21	604110	ADGRG1, GPR56, TM7XN1, BFPP, BPPR	Adhesion G protein-coupled receptor G1	ADGRG1	9289	ENSG00000205336		Polymicrogyria, bilateral frontoparietal, 606854 (3), Autosomal recessive; Polymicrogyria, bilateral perisylvian, 615752 (3)	Adgrg1 (MGI:1340051)
chr16	57735601	57757249	16q21	16q21	602703	KATNB1, LIS6	Katanin, p80 subunit, B1	KATNB1	10300	ENSG00000140854		Lissencephaly 6, with microcephaly, 616212 (3), Autosomal recessive	Katnb1 (MGI:1921437)
chr16	57758216	57863052	16q13-q21	16q21	604535	KIFC3	Kinesin family member C3	KIFC3	3801	ENSG00000140859			Kifc3 (MGI:109202)
chr16	57882339	57971115	16q13	16q21	600724	CNGB1, CNCG3L, CNCG2, RP45	Cyclic nucleotide gated channel, beta 1	CNGB1	1258	ENSG00000070729		Retinitis pigmentosa 45, 613767 (3), Autosomal recessive	
chr16	57976434	57988115	16q13	16q21	610264	TEPP	Testis-prostate-placenta-expressed protein	TEPP	374739	ENSG00000159648			Tepp (MGI:1920657)
chr16	57999598	58021622	16q13	16q21	613276	USB1, C16orf57, PN	U6 small nuclear RNA biogenesis phosphodiesterase 1	USB1	79650	ENSG00000103005		Poikiloderma with neutropenia, 604173 (3), Autosomal recessive	Usb1 (MGI:2142454)
chr16	58025565	58046900	16q13-q21	16q21	602261	MMP15	Matrix metalloproteinase 15	MMP15	4324	ENSG00000102996			Mmp15 (MGI:109320)
chr16	58113587	58129424	16q21	16q21	617906	CFAP20, BUG22, C16orf80, FSAP23	Cilia- and flagella-associated protein 20	CFAP20	29105	ENSG00000070761			Cfap20 (MGI:107428)
chr16	58157902	58197919	16p13.3-p13.2	16q21	115442	CSNK2A2	Casein kinase-2, alpha-prime polypeptide	CSNK2A2	1459	ENSG00000070770			Csnk2a2 (MGI:88547)
chr16	58196861	58283835	16q21	16q21	616070	CCDC113	Coiled-coil domain-containing protein 113	CCDC113	29070	ENSG00000103021			Ccdc113 (MGI:3606076)
chr16	58392393	58406143	16q21	16q21	610610	GINS3, PSF3	GINS complex subunit 3	GINS3	64785	ENSG00000181938			Gins3 (MGI:1926083)
chr16	58463644	58515402	16q21-q22.3	16q21	614463	NDRG4, SMAP8, KIAA1180	NMYC downstream-regulated gene 4	NDRG4	65009	ENSG00000103034			Ndrg4 (MGI:2384590)
chr16	58515478	58521989	16q21	16q21	616424	SETD6	SET domain-containing protein 6	SETD6	79918	ENSG00000103037			Setd6 (MGI:1913333)
chr16	58519945	58629885	16q21	16q21	604917	CNOT1, NOT1	CCR4-NOT transcription complex, subunit 1	CNOT1	23019	ENSG00000125107			Cnot1 (MGI:2442402)
chr16	58665108	58684776	16q21	16q21	614236	SLC38A7, SNAT7	Solute carrier family 38 (amino acid transporter), member 7	SLC38A7	55238	ENSG00000103042			Slc38a7 (MGI:2679005)
chr16	58707130	58734356	16q21	16q21	138150	GOT2	Glutamic-oxaloacetic transaminase-2, mitochondrial (EC 2.6.1.1)	GOT2	2806	ENSG00000125166	?pseudogenes on 12 and 1		Got2 (MGI:95792)
chr16	61640397	62036834	16q21-q22.1	16q21	603008	CDH8	Cadherin-8	CDH8	1006	ENSG00000150394			Cdh8 (MGI:107434)
chr16	64943752	65126111	16q21-q22.1	16q21	600023	CDH11, CAD11	Cadherin-11 (OB-cadherin, osteoblast)	CDH11	1009	ENSG00000140937			Cdh11 (MGI:99217)
chr16	66366606	66404785	16q22.1	16q21	601120	CDH5	Cadherin-5	CDH5	1003	ENSG00000179776			Cdh5 (MGI:105057)
chr16	66427296	66495287	16q21	16q21	612051	BEAN, SCA31	Brain-expressed, associated with NEDD4	BEAN1	146227	ENSG00000166546		Spinocerebellar ataxia 31, 117210 (3), Autosomal dominant	Bean1 (MGI:1929597)
chr16	66508002	66550411	16q22	16q21	188250	TK2, MTDPS2, PEOB3	Thymidine kinase, mitochondrial	TK2	7084	ENSG00000166548	mutation identified in 1 PEOB3 family	Mitochondrial DNA depletion syndrome 2 (myopathic type), 609560 (3), Autosomal recessive; ?Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3, 617069 (3), Autosomal recessive	Tk2 (MGI:1913266)
chr16	66552562	66566286	16q23	16q21	616074	CKLF, HSPC224	Chemokine-like factor	CKLF	51192	ENSG00000217555			Cklf (MGI:1922708)
chr16	66566390	66579134	16q22	16q21	607884	CMTM1, CKLFSF1	CKLF-like marvel transmembrane domain-containing 1	CMTM1	113540	ENSG00000089505			
chr16	66579447	66588274	16q22	16q21	607885	CMTM2, CKLFSF2	CKLF-like marvel transmembrane domain-containing 2	CMTM2	146225	ENSG00000140932			Cmtm2b (MGI:2447311)
chr16	66598177	66696706	16q22	16q21-q22	607887	CMTM4, CKLFSF4	CKLF-like marvel transmembrane domain-containing 4	CMTM4	146223	ENSG00000183723			Cmtm4 (MGI:2142888)
chr16	66600000	74100000	16q22		606179	ANBC	Aneurysmal bone cysts		114293		t(16:17); ?defect at 17p13	Aneurysmal bone cysts, 606179 (2)	
chr16	66600000	74100000	16q22		613055	ATFB8	Atrial fibrillation, familial, 8		100306979		associated with rs7193343	Atrial fibrillation, familial, 8, 613055 (2)	
chr16	66600000	74100000	16q22		614541	C16DELq22, DEL16q22	Chromosome 16q22 deletion syndrome					Chromosome 16q22 deletion syndrome, 614541 (4), Isolated cases	
chr16	66600000	70800000	16q22.1		612590	CRCS9	Colorectal cancer, susceptibility to, 9		100329169		associated with rs9929218	{Colorectal cancer, susceptibility to, 9}, 612590 (2)	
chr16	66600000	74100000	16q22		604901	NAIC	North American Indian childhood cirrhosis					North American Indian childhood cirrhosis, 604901 (2)	
chr16	66600000	79200000	16q22.1-q23.1		611571	OTSC4	Otosclerosis 4	OTSC4	286751		between D16S3107 and D16S3097	{Otosclerosis 4}, 611571 (2), Autosomal dominant	
chr16	66600000	70800000	16q22.1		600223	SCA4	Spinocerebellar ataxia 4					Spinocerebellar ataxia 4, 600223 (2), Autosomal dominant	
chr16	66603995	66613891	16q22	16q22.1	607886	CMTM3, CKLFSF3	CKLF-like marvel transmembrane domain-containing 3	CMTM3	123920	ENSG00000140931			Cmtm3 (MGI:2447162)
chr16	66754409	66801619	16q22.1	16q22.1	617332	TERB1, CCDC79	Telomere repeat-binding bouquet formation protein 1	TERB1	283847	ENSG00000249961			Terb1 (MGI:2443187)
chr16	66802877	66830976	16q22	16q22.1	603385	NAE1, APPBP1	NEDD8 activating enzyme E1 subunit 1	NAE1	8883	ENSG00000159593			Nae1 (MGI:2384561)
chr16	66844378	66854148	16q21-q23	16q22.1	114770	CA7	Carbonic anhydrase VII	CA7	766	ENSG00000168748			Car7 (MGI:103100)
chr16	66880360	66891100	16q22.1	16q22.1	615499	PDP2, KIAA1348	Pyruvate dehydrogenase phosphatase catalytic subunit 2	PDP2	57546	ENSG00000172840			Pdp2 (MGI:1918878)
chr16	66908121	66918983	16q22.1	16q22.1	603118	CDH16	Cadherin-16	CDH16	1014	ENSG00000166589			Cdh16 (MGI:106671)
chr16	66921678	66925535	16q22	16q22.1	179503	RRAD	Ras-related associated with diabetes	RRAD	6236	ENSG00000166592			Rrad (MGI:1930943)
chr16	66932054	66934422	16q22.1	16q22.1	614778	FAM96B, MIP18	Family with sequence similarity 96, member B	FAM96B	51647	ENSG00000166595			Fam96b (MGI:1915773)
chr16	66934443	66945095	16q22.1	16q22.1	605278	CES2	Carboxylesterase 2	CES2	8824	ENSG00000172831			Ces2h (MGI:3648740)
chr16	66961228	66975151	16q21	16q22.1	605279	CES3, ES31	Carboxylesterase 3	CES3	23491	ENSG00000172828			Ces3a,Ces3b (MGI:102773,MGI:3644960)
chr16	67029146	67101057	16q22	16q22.1	121360	CBFB, PEBP2B	Core-binding factor, beta subunit	CBFB	865	ENSG00000067955	inv(16)(p13;q22); fuses to MYH11	Myeloid leukemia, acute, M4/M4Eo subtype, somatic, 601626 (1)	Cbfb (MGI:99851)
chr16	67154184	67159908	16q22	16q22.1	603500	TRADD	TNRF1-associated death domain protein	TRADD	8717	ENSG00000102871			Tradd (MGI:109200)
chr16	67159987	67164173	16q22.1	16q22.1	609077	FBXL8, FBL8	F-box and leucine-rich repeat protein 8	FBXL8	55336	ENSG00000135722			Fbxl8 (MGI:1354697)
chr16	67163384	67169944	16q21-q22.1	16q22.1	602438	HSF4, CTM, CTRCT5	Heat-shock transcription factor 4	HSF4	3299	ENSG00000102878		Cataract 5, multiple types, 116800 (3), Autosomal dominant	Hsf4 (MGI:1347058)
chr16	67170496	67175736	16q21-q23	16q22.1	605235	NOL3, NOP, MYC, ARC, FCM	Nucleolar protein 3	NOL3	8996	ENSG00000140939		Myoclonus, familial cortical, 614937 (3), Autosomal dominant	Nol3 (MGI:1925938)
chr16	67184378	67190203	16q22.1	16q22.1	614117	EXOC3L1, EXOC3L	Exocyst complex component 3-like 1	EXOC3L1	283849	ENSG00000179044			Exoc3l (MGI:3041195)
chr16	67192159	67198917	16q22.1	16q22.1	600659	E2F4	E2F transcription factor 4, p107/p130-binding	E2F4	1874	ENSG00000205250			E2f4 (MGI:103012)
chr16	67202320	67202394	16q22.1	16q22.1	613701	MIR328, MIRN328	Micro RNA 328	MIR328	442901				
chr16	67199124	67204028	Chr.16	16q22.1	606422	ELMO3	Engulfment and cell motility gene 3	ELMO3	79767	ENSG00000102890			Elmo3 (MGI:2679007)
chr16	67229388	67247521	16q22	16q22.1	606881	FHOD1, FHOS	Formin homology 2 domain-containing 1	FHOD1	29109	ENSG00000135723			
chr16	67247548	67272203	16q22.1	16q22.1	600477	SLC9A5, NHE5	Solute carrier family 9 (sodium/hydrogen exchanger), member 5	SLC9A5	6553	ENSG00000135740			Slc9a5 (MGI:2685542)
chr16	67277819	67289499	16q22.1	16q22.1	609526	PLEKHG4	Pleckstrin homology domain containing, family G (puratrophin 1)	PLEKHG4	25894	ENSG00000196155			Plekhg4 (MGI:2142544)
chr16	67389806	67393534	16q22.1	16q22.1	616957	TPPP3, p20	Tubulin polymerization-promoting protein family, member 3	TPPP3	51673	ENSG00000159713			Tppp3 (MGI:1915221)
chr16	67431132	67437552	16q22	16q22.1	614232	HSD11B2, HSD11K, AME	Hydroxysteroid (11-beta) dehydrogenase 2	HSD11B2	3291	ENSG00000176387		Apparent mineralocorticoid excess, 218030 (3), Autosomal recessive	Hsd11b2 (MGI:104720)
chr16	67438013	67481185	16q22	16q22.1	607028	ATP6V0D1	ATPase, H=transporting lysosomal, 38kD, V0 subunit D, isoform 1	ATP6V0D1	9114	ENSG00000159720			Atp6v0d1 (MGI:1201778)
chr16	67482570	67483812	16q22	16q22.1	602311	AGRP, ART, AGRT	Agouti-related transcript, mouse, homolog of	AGRP	181	ENSG00000159723		{Leanness, inherited} (3); {Obesity, late-onset}, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Agrp (MGI:892013)
chr16	67562406	67639184	16q22.1	16q22.1	604167	CTCF, MRD21	CCCTC-binding factor	CTCF	10664	ENSG00000102974		Mental retardation, autosomal dominant 21, 615502 (3), Autosomal dominant	Ctcf (MGI:109447)
chr16	67644939	67657568	16q22.1	16q22.1	610859	CARMIL2, RLTPR	Capping protein regulator and myosin 1 linker 2	CARMIL2	146206	ENSG00000159753			Carmil2 (MGI:2685431)
chr16	67657511	67660831	16q22.1	16q22.1	609377	ACD, PTOP, PIP1, TINT1	Acd, mouse, homolog of	ACD	65057	ENSG00000102977	mutation has been identified in 1 DKCA7 and 1 DKCB7 family	?Dyskeratosis congenita, autosomal dominant 6, 616553 (3), Autosomal recessive, Autosomal dominant; ?Dyskeratosis congenita, autosomal recessive 7, 616553 (3), Autosomal recessive, Autosomal dominant	Acd (MGI:87873)
chr16	67723065	67806651	16q22.1	16q22.1	614031	RANBP10, KIAA1464	Ran-binding protein 10	RANBP10	57610	ENSG00000141084			Ranbp10 (MGI:1921584)
chr16	67806572	67828067	16q22.1	16q22.1	607720	TSNAXIP1, TXI1	Translin-associated factor X-interacting protein 1	TSNAXIP1	55815	ENSG00000102904			Tsnaxip1 (MGI:1919486)
chr16	67828156	67847457	16q22.1	16q22.1	611510	CENPT	Centromere protein T	CENPT	80152	ENSG00000102901			Cenpt (MGI:2443939)
chr16	67842309	67844194	16q22.1	16q22.1	609119	THAP11, RONIN	THAP domain-containing protein 11	THAP11	57215	ENSG00000168286			Thap11 (MGI:1930964)
chr16	67873022	67884513	16q22.1	16q22.1	606030	EDC4, RCD8, GE1, HEDL5	Enhancer of mRNA decapping 4	EDC4	23644	ENSG00000038358			Edc4 (MGI:2446249)
chr16	67893271	67929677	16q22.1	16q22.1	177015	PSKH1	Putative serine kinase H1	PSKH1	5681	ENSG00000159792			Pskh1 (MGI:3528383)
chr16	67929569	67931874	16q22.1	16q22.1	118888	CTRL	Chymotrypsin-like protease	CTRL	1506	ENSG00000141086			Ctrl (MGI:88558)
chr16	67934503	67936876	16q22.1	16q22.1	176847	MECL1, LMP10, PSMB10	Proteosome subunit MECL1	PSMB10	5699	ENSG00000205220	3.1kb from LCAT		Psmb10 (MGI:1096380)
chr16	67939883	67944111	16q22.1	16q22.1	606967	LCAT	Lecithin-cholesterol acyltransferase	LCAT	3931	ENSG00000213398	very close to HP	Fish-eye disease, 136120 (3), Autosomal recessive; Norum disease, 245900 (3), Autosomal recessive	Lcat (MGI:96755)
chr16	67943473	67968693	16q22.1	16q22.1	604119	SLC12A4, KCC1	Solute carrier family 12 (potassium/chloride transporters), member 4	SLC12A4	6560	ENSG00000124067			Slc12a4 (MGI:1309465)
chr16	67975662	67980548	16q22.1	16q22.1	609926	DPEP3, MBD3	Dipeptidase 3	DPEP3	64180	ENSG00000141096			Dpep3 (MGI:1919104)
chr16	67987389	68000643	16q22.1	16q22.1	609925	DPEP2, MBD2	Dipeptidase 2	DPEP2	64174	ENSG00000167261			Dpep2 (MGI:2442042)
chr16	68021273	68023866	16q22.1	16q22.1	607618	DDX28, MDDX28	DEAD/H box 28	DDX28	55794	ENSG00000182810			Ddx28 (MGI:1919236)
chr16	68022943	68079322	16q22.1	16q22.1	609707	DUS2L, DUS2	Dihydrouridine synthase 2-like	DUS2	54920	ENSG00000167264			Dus2 (MGI:1913619)
chr16	68225967	68236232	16q22.1	16q22.1	612960	ESRP2, RBM35B	Epithelial splicing regulatory protein 2	ESRP2	80004	ENSG00000103067			Esrp2 (MGI:1924661)
chr16	68085365	68229258	Chr.16	16q22.1	602698	NFATC3	Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 3	NFATC3	4775	ENSG00000072736			Nfatc3 (MGI:103296)
chr16	68245343	68261061	16q22.1	16q22.1	609362	LYPLA3, LLPL, ACS, LPLA2	Lysophospholipase 3	PLA2G15	23659	ENSG00000103066			Pla2g15 (MGI:2178076)
chr16	68264509	68301822	Chr.16	16q22.1	605641	SLC7A6	Solute carrier family 7 (y+L-type amino acid transporter), member 6	SLC7A6	9057	ENSG00000103064			Slc7a6 (MGI:2142598)
chr16	68310950	68360875	16q22.1	16q22.1	610087	PRMT7, KIAA1933, SBIDDS	Protein arginine N-methyltransferase 7	PRMT7	54496	ENSG00000132600		Short stature, brachydactyly, intellectual developmental disability, and seizures, 617157 (3), Autosomal recessive	Prmt7 (MGI:2384879)
chr16	68530248	68576071	16q22.1	16q22.1	609451	ZFP90, NK10, KIAA1954	Zinc finger protein 90, mouse, homolog of	ZFP90	146198	ENSG00000184939			Zfp90 (MGI:104786)
chr16	68644835	68727572	16q22.1	16q22.1	114021	CDH3, CDHP, PCAD, HJMD	Cadherin-3 (P-cadherin)	CDH3	1001	ENSG00000062038	in mouse tightly linked to ECAD	Ectodermal dysplasia, ectrodactyly, and macular dystrophy, 225280 (3), Autosomal recessive; Hypotrichosis, congenital, with juvenile macular dystrophy, 601553 (3), Autosomal recessive	Cdh3 (MGI:88356)
chr16	68737289	68835541	16q22.1	16q22.1	192090	CDH1, UVO, LCAM, ECAD, BCDS1	Cadherin-1 (E-cadherin; uvomorulin)	CDH1	999	ENSG00000039068	near LCAT	Blepharocheilodontic syndrome 1, 119580 (3), Autosomal dominant; {Breast cancer, lobular}, 114480 (3), Autosomal dominant; Endometrial carcinoma, somatic, 608089 (3); Gastric cancer, familial diffuse, with or without cleft lip and/or palate, 137215 (3), Autosomal dominant; Ovarian carcinoma, somatic, 167000 (3); {Prostate cancer, susceptibility to}, 176807 (3), Autosomal dominant	Cdh1 (MGI:88354)
chr16	69105563	69118718	16q22.1	16q22.1	602428	HAS3	Hyaluronan synthase 3	HAS3	3038	ENSG00000103044			Has3 (MGI:109599)
chr16	69118008	69132589	16q22.1	16q22.1	613202	CHTF8, CTF8	Chromosome transmission fidelity factor 8, S. cerevisiae, homolog of	CHTF8	54921	ENSG00000168802			Chtf8 (MGI:2443370)
chr16	69132595	69169033	16q22	16q22.1	607456	UTP4, CIRH1A, TEX292, KIAA1988	Utp4, S. cerevisiae, homolog of	UTP4	84916	ENSG00000141076			Utp4 (MGI:1096573)
chr16	69187146	69309051	16q22-q23	16q22.1	600027	SNTB2, SNT2B2, SNTL	Syntrophin, beta-2	SNTB2	6645	ENSG00000168807			Sntb2 (MGI:101771)
chr16	69311383	69325042	16q22	16q22.1	609982	VPS4A, VPS4	Vacuolar protein sorting 4, yeast, homolog of, A	VPS4A	27183	ENSG00000132612			Vps4a (MGI:1890520)
chr16	69328620	69339622	16q22.1	16q22.1	606979	COG8, DOR1, CDG2H	Component of oligomeric golgi complex 8	COG8	84342	ENSG00000272617		Congenital disorder of glycosylation, type IIh, 611182 (3)	Cog8 (MGI:2142885)
chr16	69355560	69386003	16q22.1	16q22.1	602027	TERF2, TRF2	Telomeric repeat-binding factor-2	TERF2	7014	ENSG00000132604			Terf2 (MGI:1195972)
chr16	69424594	69466263	16q22.1	16q22.1	611964	CYB5B, CYPB5M	Cytochrome b5, type B (outer mitochondrial membrane)	CYB5B	80777	ENSG00000103018			Cyb5b (MGI:1913677)
chr16	69565951	69704665	16q22.1	16q22.1	604708	NFAT5, KIAA0827, NFATL1, TONEBP	Nuclear factor of activated T cells 5	NFAT5	10725	ENSG00000102908			Nfat5 (MGI:1859333)
chr16	69709400	69726667	16q22.1	16q22.1	125860	NQO1, DIA4, NMOR1	NAD(P)H dehydrogenase, quinone 1 (diaphorase-4)	NQO1	1728	ENSG00000181019		{Benzene toxicity, susceptibility to} (3); {Breast cancer, poor survival after chemotherapy for} (3); {Leukemia, post-chemotherapy, susceptibility to} (3)	Nqo1 (MGI:103187)
chr16	69762283	69941740	16q21	16q22.1	602308	WWP2	WW domain-containing protein 2	WWP2	11060	ENSG00000198373			Wwp2 (MGI:1914144)
chr16	69933080	69933179	16q22.1	16q22.1	611894	MIR140, MIRN140	Micro RNA 140	MIR140	406932				
chr16	69950231	69968477	16q22.1	16q22.1	616571	CLEC18A	C-type lecting domain family 18, member A	CLEC18A	348174	ENSG00000157322			
chr16	70113625	70163630	16q22.1	16q22.1	617835	PDPR, KIAA1990	Pyruvate dehydrogenase phosphatase regulatory subunit	PDPR	55066	ENSG00000090857			Pdpr (MGI:2442188)
chr16	70173321	70187146	16q22.1	16q22.1	616573	CLEC18C	C-type lectin domain family 18, member C	CLEC18C	283971	ENSG00000157335			
chr16	70250230	70251929	16q22.1	16q22.1	606490	EXOSC6, MTR3	Exosome component 6	EXOSC6	118460	ENSG00000223496			Exosc6 (MGI:1919794)
chr16	70252294	70289508	16q22	16q22.1	601065	AARS, CMT2N, EIEE29	Alanyl-tRNA synthetase	AARS	16	ENSG00000090861		Charcot-Marie-Tooth disease, axonal, type 2N, 613287 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 29, 616339 (3), Autosomal recessive	Aars (MGI:2384560)
chr16	70289766	70335212	Chr.16	16q22.1	605812	DDX19, DBP5	DEAD/H box 19	DDX19B	11269	ENSG00000157349			Ddx19b (MGI:2148251)
chr16	70480568	70523553	16q22.1	16q22.1	606976	COG4, COD1, CDG2J	Component of oligomeric golgi complex 4	COG4	25839	ENSG00000103051		Congenital disorder of glycosylation, type IIj, 613489 (3), Autosomal recessive	Cog4 (MGI:2142808)
chr16	70523787	70577667	16q22.1	16q22.1	605592	SF3B3, SF3B130, SAP130	Splicing factor 3B, subunit 3	SF3B3	23450	ENSG00000189091			Sf3b3 (MGI:1289341)
chr16	70579894	70660681	16q22.1	16q22.1	612081	IL34, C16orf77	Interleukin 34	IL34	146433	ENSG00000157368			Il34 (MGI:1923777)
chr16	70661203	70686050	16q22.1	16q22.1	616951	MTSS1L, ABBA1	Metastasis suppressor 1-like protein	MTSS1L	92154	ENSG00000132613			Mtss1l (MGI:3039591)
chr16	70687438	70801175	16q22.1	16q22.1-q22.2	604632	VAC14, TAX1BP2, TRX, SNDC	Vac14, S. cerevisiae, homolog of	VAC14	55697	ENSG00000103043		Striatonigral degeneration, childhood-onset, 617054 (3), Autosomal recessive	Vac14 (MGI:2157980)
chr16	70802083	71230721	16q22.2	16q22.2	610812	HYDIN, HYDIN1, CILD5	Hydin, mouse, homolog of	HYDIN	54768	ENSG00000157423	duplicated copy on 1q21.1	Ciliary dyskinesia, primary, 5, 608647 (3), Autosomal recessive	Hydin (MGI:2389007)
chr16	71282299	71290177	16q22.2	16q22.2	616190	CMTR2, MTR2, FTSJD1	CAP methyltransferase 2	CMTR2	55783	ENSG00000180917			Cmtr2 (MGI:2384580)
chr16	71358712	71390437	16q22.1	16q22.2	114051	CALB2	Calbindin 2, 29kD (calretinin)	CALB2	794	ENSG00000172137			Calb2 (MGI:101914)
chr16	71447596	71462251	16q22	16q22.2	194527	ZNF23, KOX16	Zinc finger protein-32 (KOX16)	ZNF23	7571	ENSG00000167377			Zfp612 (MGI:2443465)
chr16	71474072	71489350	16q22	16q22.2	194525	ZNF19, KOX12	Zinc finger protein-19 (KOX12)	ZNF19	7567	ENSG00000157429	?16q23, 19q13		
chr16	71566850	71577094	16q22.1-q22.3	16q22.2	613018	TAT	Tyrosine aminotransferase, soluble	TAT	6898	ENSG00000198650		Tyrosinemia, type II, 276600 (3), Autosomal recessive	Tat (MGI:98487)
chr16	71626152	71641964	16q22.2	16q22.2	614094	MARVELD3	Marvel domain-containing protein 3	MARVELD3	91862	ENSG00000140832			Marveld3 (MGI:1920858)
chr16	71644923	71724700	16q22.3	16q22.2	611066	PHLPPL, PHLPP2	PH domain and leucine-rich repeat protein phosphatase-like	PHLPP2	23035	ENSG00000040199			Phlpp2 (MGI:2444928)
chr16	71728999	71809072	16q23	16q22.2	603533	AP1G1, ADTG, CLAPG1	Adaptor-related protein complex 1, gamma 1 subunit (adaptin, gamma)	AP1G1	164	ENSG00000166747			Ap1g1 (MGI:101919)
chr16	71845990	71857332	16q22.2	16q22.2	614301	ATXN1L, BOAT1	Ataxin 1-like (brother of ataxin 1)	ATXN1L	342371	ENSG00000224470			Atxn1l (MGI:3694797)
chr16	71894407	71930638	16q22.2	16q22.2	616434	IST1, KIAA0174	Increased sodium tolerance 1, yeast, homolog of	IST1	9798	ENSG00000182149			Ist1 (MGI:1919205)
chr16	71929537	72000400	16q22	16q22.2	607895	PKD1L3	Polycystin 1-like 3	PKD1L3	342372	ENSG00000277481			Pkd1l3 (MGI:2664670)
chr16	72008743	72025416	16q22	16q22.2	126064	DHODH, URA1, POADS	Dihydroorotate dehydrogenase	DHODH	1723	ENSG00000102967		Miller syndrome, 263750 (3), Autosomal recessive	Dhodh (MGI:1928378)
chr16	72044260	72094315	16q22.2	16q22.2	617722	TXNL4B, DLP, DIM2	Thioredoxin-like 4B	TXNL4B	54957	ENSG00000140830			Txnl4b (MGI:2443724)
chr16	72054591	72061055	16q22.1	16q22.2	140100	HP	Haptoglobin	HP	3240	ENSG00000257017	just distal to fra16q22.1	[Anhaptoglobinemia], 614081 (3); [Hypohaptoglobinemia], 614081 (3)	Hp (MGI:96211)
chr16	72063225	72077245	16q22.1	16q22.2	140210	HPR	Haptoglobin-related locus	HPR	3250	ENSG00000261701	2.2kb 3' to HP; multiple tandem genes in blacks		
chr16	72093664	72112911	16q21-q22	16q22.2	605584	DHX38, DDX38, PRP16	DEAH (Asp-Glu-Ala-His) box polypeptide 38 (PRP6, S. cerevisiae, homolog of)	DHX38	9785	ENSG00000140829			Dhx38 (MGI:1927617)
chr16	72782884	73058634	16q22.3-q23.1	16q22.2-q22.3	104155	ZFHX3, ATBF1	Zinc finger homeobox 3	ZFHX3	463	ENSG00000140836		{Prostate cancer, susceptibility to, somatic}, 176807 (3)	Zfhx3 (MGI:99948)
chr16	72800000	79200000	16q22.3-q23.1		608932	KTCN2	Keratoconus 2		450092			Keratoconus 2, 608932 (2)	
chr16	73092348	73093773	16q22.3	16q22.3	615613	HCCAT5, HTA	Hepatocellular carcinoma-associated transcript 5	HCCAT5	283902				
chr16	74100000	84100000	16q23		612727	BMND13	Bone mineral density quantitative trait locus 13		100294717		associated with rs16945612	[Bone mineral density QTL 13], 612727 (2)	
chr16	74100000	84100000	16q23		608462	HSCR8	Hirschsprung disease, susceptibility to, 8		404719			{Hirschsprung disease, susceptibility to, 8}, 608462 (2)	
chr16	74296774	74306287	16q23-q24	16q23.1	157970	PSMD7, MOV34	Proteasome 25S subunit, non-ATPase, 7 (Moloney leukemia virus-34 proviral integration homolog)	PSMD7	5713	ENSG00000103035			Psmd7 (MGI:1351511)
chr16	74408630	74422247	16q22.3	16q23.1	616572	CLEC18B	C-type lectin domain family 18, member B	CLEC18B	497190	ENSG00000140839			Clec18a (MGI:2672935)
chr16	74447426	74607143	16q22-q23	16q23.1	600753	GLG1	Golgi apparatus protein 1	GLG1	2734	ENSG00000090863			Glg1 (MGI:104967)
chr16	74621395	74666891	16q23.1	16q23.1	614151	RFWD3, FANCW	RING finger and WD repeat domains-containing protein 3	RFWD3	55159	ENSG00000168411	mutation identified in 1 FANCW patient	?Fanconi anemia, complementation group W, 617784 (3), Autosomal recessive	Rfwd3 (MGI:2384584)
chr16	74671854	74701147	16q23.1	16q23.1	615153	MLKL	Mixed lineage kinase domain-like protein	MLKL	197259	ENSG00000168404			Mlkl (MGI:1921818)
chr16	74712954	74774830	16q23	16q23.1	611026	FA2H, FAAH, FAXDC1, FAH1, SCS7, SPG35	Fatty acid 2-hydroxylase	FA2H	79152	ENSG00000103089		Spastic paraplegia 35, autosomal recessive, 612319 (3), Autosomal recessive	Fa2h (MGI:2443327)
chr16	74873567	74985145	16q23.1	16q23.1	617418	WDR59, KIAA1923	WD repeat-containing protein 59	WDR59	79726	ENSG00000103091			Wdr59 (MGI:2442115)
chr16	74999016	75110993	16q23.1	16q23.1	612060	ZNRF1, NIN283	Zinc finger and ring finger protein 1	ZNRF1	84937	ENSG00000186187			Znrf1 (MGI:2177308)
chr16	75111859	75116794	Chr.16	16q23.1	607490	LDHD	D-lactate dehydrogenase	LDHD	197257	ENSG00000166816			Ldhd (MGI:106428)
chr16	75126284	75172233	16q23.1	16q23.1	617230	ZFP1, ZNF475	Zinc finger protein 1, mouse, homolog of	ZFP1	162239	ENSG00000184517			Zfp1 (MGI:99154)
chr16	75218985	75224926	16q23.2-q23.3	16q23.1	118890	CTRB1	Chymotrypsinogen B1	CTRB1	1504	ENSG00000168925	HP-7cM-TAT-9cM-CTRB		
chr16	75228186	75268052	16q23.1	16q23.1	602941	BCAR1, CRKAS, CAS	Breast cancer antiestrogen resistance 1	BCAR1	9564	ENSG00000050820			Bcar1 (MGI:108091)
chr16	75293709	75433488	16q22.2-q22.3	16q23.1	608108	CFDP1, CP27, BCNT	Craniofacial development protein 1	CFDP1	10428	ENSG00000153774			Cfdp1 (MGI:1344403)
chr16	75473123	75495429	16q22	16q23.1	605294	CHST6, MCDC1	Carbohydrate sulfotransferase-6 (GlcNAc-6-sulfotransferase, corneal)	CHST6	4166	ENSG00000183196		Macular corneal dystrophy, 217800 (3), Autosomal recessive	Chst5 (MGI:1931825)
chr16	75528529	75535169	16q22	16q23.1	604817	CHST5	Carbohydrate sulfotransferase-5 (GlcNAc-6-O-sulfotransferase, intestinal)	CHST5	23563	ENSG00000135702			
chr16	75538116	75556285	16q23.1	16q23.1	614949	TMEM231, JBTS20, MKS11	Transmembrane protein 231	TMEM231	79583	ENSG00000205084		Joubert syndrome 20, 614970 (3), Autosomal recessive; Meckel syndrome 11, 615397 (3), Autosomal recessive	Tmem231 (MGI:2685024)
chr16	75566350	75577880	16q22.3-q24.1	16q23.1	607452	GABARAPL2	GABA-A receptor-associated protein-like protein 2	GABARAPL2	11345	ENSG00000034713			Gabarapl2 (MGI:1890602)
chr16	75596878	75623322	16q22.2-q22.3	16q23.1	604230	ADAT1	Adenosine deaminase, tRNA-specific, 1	ADAT1	23536	ENSG00000065457			Adat1 (MGI:1353631)
chr16	75627723	75647686	16q22.2-q22.3	16q23.1	601421	KARS, CMTRIB, DFNB89	Lysyl-tRNA synthetase	KARS	3735	ENSG00000065427	mutation identified in 1 CMTRIB patient	?Charcot-Marie-Tooth disease, recessive intermediate, B, 613641 (3), Autosomal recessive; Deafness, autosomal recessive 89, 613916 (3), Autosomal recessive	Kars (MGI:1934754)
chr16	75647736	75657441	16q23.1	16q23.1	605061	TERF2IP, RAP1	Telomeric repeat binding factor 2, interacting protein	TERF2IP	54386	ENSG00000166848			Terf2ip (MGI:1929871)
chr16	76277216	76563609	16q22	16q23.1	610518	CNTNAP4, CASPR4, KIAA1763	Contactin-associated protein-like 4	CNTNAP4	85445	ENSG00000152910			Cntnap4 (MGI:2183572)
chr16	77190918	77199645	16q23.1	16q23.1	608954	MON1B, SRG1, KIAA0872	Mon1, S. cerevisiae, homolog of, B	MON1B	22879	ENSG00000103111			Mon1b (MGI:1923231)
chr16	77282127	77435113	16q23	16q23.1	607512	ADAMTS18, MMCAT	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 18	ADAMTS18	170692	ENSG00000140873		Microcornea, myopic chorioretinal atrophy, and telecanthus, 615458 (3), Autosomal recessive	Adamts18 (MGI:2442600)
chr16	78022545	78032105	16q23	16q23.1	613588	CLEC3A, CLECSF1	C-type lectin domain family 3, member A	CLEC3A	10143	ENSG00000166509			Clec3a (MGI:2685642)
chr16	78099412	79212666	16q23.3-q24.1	16q23.1-q23.2	605131	WWOX, FOR, SCAR12, EIEE28	WW domain-containing oxidoreductase	WWOX	51741	ENSG00000186153		Epileptic encephalopathy, early infantile, 28, 616211 (3), Autosomal recessive; Esophageal squamous cell carcinoma, somatic, 133239 (3); Spinocerebellar ataxia, autosomal recessive 12, 614322 (3), Autosomal recessive	Wwox (MGI:1931237)
chr16	79202623	79601951	16q22-q23	16q23.2	177075	MAF, CCA4, CTRCT21, AYGRP	v-Maf avian musculoaponeurotic fibrosarcoma oncogene homolog	MAF	4094	ENSG00000178573		Ayme-Gripp syndrome, 601088 (3), Autosomal dominant; Cataract 21, multiple types, 610202 (3), Autosomal dominant	Maf (MGI:96909)
chr16	79721311	79770531	16q23.2	16q23.2	616264	MAFTRR, lincMAF4	MAF transcriptional regulator FNA, noncoding	MAFTRR	102467146				
chr16	80540258	80550810	16q23.3	16q23.2	607168	DYNLRB2, DNCL2B	Dynein, light chain, roadblock-type 2	DYNLRB2	83657	ENSG00000168589			Dynlrb2 (MGI:1922715)
chr16	81006497	81033106	16q23.2	16q23.2	611509	CENPN	Centromere protein N	CENPN	55839	ENSG00000166451			Cenpn (MGI:1919405)
chr16	81035852	81047345	16q23.2	16q23.2	614693	ATMIN, ASCIZ, KIAA0431	ATM interactor	ATMIN	23300	ENSG00000166454			Atmin (MGI:2682328)
chr16	81081946	81096374	16q24	16q23.2	238330	GCSH, NKH	Glycine cleavage system H protein	GCSH	2653	ENSG00000140905		Glycine encephalopathy, 605899 (3), Autosomal recessive	Gcsh (MGI:1915383)
chr16	81100878	81220369	16q23.2	16q23.2	607894	PKD1L2, PC1L2, KIAA1879	Polycystin 1-like 2	PKD1L2	114780	ENSG00000166473			Pkd1l2 (MGI:2664668)
chr16	81238447	81291141	16q21-q23	16q23.2	605748	BCO1, BCMO1, BCDO	Beta-carotene oxygenase 1	BCO1	53630	ENSG00000135697	mutation identified in 1 HCVAD patient	?Hypercarotenemia and vitamin A deficiency, autosomal dominant, 115300 (3), Autosomal dominant	Bco1 (MGI:1926923)
chr16	81314940	81380197	16q24.1	16q23.2	605379	GAN, GAN1	Gigaxonin	GAN	8139	ENSG00000261609		Giant axonal neuropathy-1, 256850 (3), Autosomal recessive	Gan (MGI:1890619)
chr16	81445169	81711761	16q24	16q23.2-q23.3	610112	CMIP, KIAA1694, TCMIP	C-MAF-inducing protein	CMIP	80790	ENSG00000153815			Cmip (MGI:1921690)
chr16	81600000	84100000	16q23.3		613836	ADIPQTL5	Adiponectin, serum level of, quantitative trait locus 5		100653375		associated with rs3865188	{Adiponectin, serum level of, QTL5], 613836 (2)	
chr16	81779257	81962692	16q24.1	16q23.3	600220	PLCG2, FCAS3, APLAID	Phospholipase C, gamma 2	PLCG2	5336	ENSG00000197943		Autoinflammation, antibody deficiency, and immune dysregulation syndrome, 614878 (3), Autosomal dominant; Familial cold autoinflammatory syndrome 3, 614468 (3), Autosomal dominant	Plcg2 (MGI:97616)
chr16	81997645	82011525	16q23.3	16q23.3	616164	SDR42E1	Short-chain dehydrogenase/reductase family 42E, member 1	SDR42E1	93517	ENSG00000184860			Sdr42e1 (MGI:1921282)
chr16	82035252	82098533	16q24.1-q24.2	16q23.3	109685	HSD17B2, EDH17B2	Hydroxysteroid (17-beta) dehydrogenase 2	HSD17B2	3294	ENSG00000086696			Hsd17b2 (MGI:1096386)
chr16	82148161	82170223	Chr.16	16q23.3	605500	MPHOSPH6, MPP	M-phase phosphoprotein 6	MPHOSPH6	10200	ENSG00000135698			Mphosph6 (MGI:1915783)
chr16	82626793	83796609	16q24.2-q24.3	16q23.3	601364	CDH13, CDHH	Cadherin-13 (H-cadherin, heart)	CDH13	1012	ENSG00000140945			Cdh13 (MGI:99551)
chr16	83807902	83813001	16q23.3	16q23.3	604553	HSBP1	Heat-shock factor-binding protein 1	HSBP1	3281	ENSG00000230989			Hsbp1 (MGI:1915446)
chr16	83899124	83916181	16q24	16q23.3	606761	MLYCD, MCD	Malonyl-CoA decarboxylase	MLYCD	23417	ENSG00000103150		Malonyl-CoA decarboxylase deficiency, 248360 (3), Autosomal recessive	Mlycd (MGI:1928485)
chr16	83953221	83966331	16q23.3	16q23.3	607975	OSGIN1, OKL38	Oxidative stress-induced growth inhibitor 1	OSGIN1	29948	ENSG00000140961			Osgin1 (MGI:1919089)
chr16	84009666	84043371	16q23.3	16q23.3	615585	SLC38A8, FVH2	Solute carrier family 38 (amino acid transporter), member 8	SLC38A8	146167	ENSG00000166558		Foveal hypoplasia 2, with or without optic nerve misrouting and/or anterior segment dysgenesis, 609218 (3), Autosomal recessive	Slc38a8 (MGI:2685433)
chr16	84053760	84116942	16q24	16q23.3-q24.1	603355	MBTPS1, S1P	Membrane-bound transcription factor protease, site 1	MBTPS1	8720	ENSG00000140943			Mbtps1 (MGI:1927235)
chr16	84100000	87000000	16q24.1		607687	HDLC3	High density lipoprotein cholesterol, low serum, 3		353125			{High density lipoprotein cholesterol, low serum, 3}, 607687 (2)	
chr16	84100000	90338345	16q24		613547	STQTL22	Stature quantitative trait locus 22		100529227		linked to rs299956 and rs2076962	{Stature QTL 22}, 613547 (2)	
chr16	84145259	84178760	16q24.1	16q24.1	613190	DNAAF1, LRRC50, ODA7, CILD13	Dynein, axonemal, assembly factor 1	DNAAF1	123872	ENSG00000154099		Ciliary dyskinesia, primary, 13, 613193 (3), Autosomal recessive	Dnaaf1 (MGI:1915520)
chr16	84177846	84187069	16q24	16q24.1	604905	TAF1C, TAFI110, SL1	TATA box-binding protein-associated factor 1C	TAF1C	9013	ENSG00000103168			Taf1c (MGI:109576)
chr16	84221134	84239749	16q24.1	16q24.1	607603	KCNG4, KV6.3, KV6.4	Potassium channel, voltage-gated, subfamily G, member 4	KCNG4	93107	ENSG00000168418			Kcng4 (MGI:1913983)
chr16	84292232	84329850	16q24.3	16q24.1	605322	WFDC1, PS20	WAP four-disulfide core domain-1, mouse, homolog of	WFDC1	58189	ENSG00000103175			Wfdc1 (MGI:1915116)
chr16	84368522	84465776	16q24.1	16q24.1	613082	ATP2C2, SPCA2, KIAA0703	ATPase, Ca(2+)-transporting, type 2C, member 2	ATP2C2	9914	ENSG00000064270			Atp2c2 (MGI:1916297)
chr16	84565595	84618095	16q24.1	16q24.1	606748	COTL1, CLP	Coactosin-like protein 1	COTL1	23406	ENSG00000103187	pseudogenes on 15, 17, and Y		Cotl1 (MGI:1919292)
chr16	84699948	84779921	16q24.1	16q24.1	609818	USP10, KIAA0190	Ubiquitin-specific protein 10	USP10	9100	ENSG00000103194			Usp10 (MGI:894652)
chr16	84819980	84909509	16q24.1	16q24.1	612434	CRISPLD2	Cysteine-rich secretory protein, LCCL domain-containing, 2	CRISPLD2	83716	ENSG00000103196			Crispld2 (MGI:1926142)
chr16	84974459	85011534	16q24.1	16q24.1	614604	ZDHHC7, DHHC7	Zinc finger DHHC domain-containing protein 7	ZDHHC7	55625	ENSG00000153786			Zdhhc7 (MGI:2142662)
chr16	85027708	85094229	16q24.1	16q24.1	611675	KIAA0513	KIAA0513 gene	KIAA0513	9764	ENSG00000135709			6430548M08Rik (MGI:2443793)
chr16	85098351	85112507	16q24.1	16q24.1	617274	FAM92B	Family with sequence similarity 92, member B	FAM92B	339145	ENSG00000153789			Fam92b (MGI:3588213)
chr16	85169511	85676205	16q24.1	16q24.1	616886	GSE1, KIAA0182	GSE1 coiled-coil protein	GSE1	23199	ENSG00000131149			Gse1 (MGI:1098275)
chr16	85677673	85688981	16q24.1	16q24.1	610609	GINS2, PSF2	GINS complex subunit 2	GINS2	51659	ENSG00000131153			Gins2 (MGI:1921019)
chr16	85778623	85799554	16q24.1	16q24.1	604886	EMC8, NOC4	ER membrane protein complex subunit 8	EMC8	10328	ENSG00000131148			Emc8 (MGI:1343095)
chr16	85799566	85807002	16q22-qter	16q24.1	123864	COX4I1, COX4	Cytochrome c oxidase, subunit IV, isoform 1	COX4I1	1327	ENSG00000131143			Cox4i1 (MGI:88473)
chr16	85899167	85922605	16q24.1	16q24.1	601565	IRF8, ICSBP1, IMD32A, IMD32B	Interferon regulatory factor 8	IRF8	3394	ENSG00000140968		Immunodeficiency 32A, mycobacteriosis, autosomal dominant, 614893 (3), Autosomal dominant; Immunodeficiency 32B, monocyte and dendritic cell deficiency, autosomal recessive, 614894 (3), Autosomal recessive	Irf8 (MGI:96395)
chr16	86196180	86199719	16q24.1	16q24.1	614978	TCONS00024492	Long noncoding RNA TCONS_00024492	LINC01082	100506542				
chr16	86225579	86286246	16q24.1	16q24.1	614977	LINC01081, TCONS00024764	Long intergenic non-protein coding RNA 1081	LINC01081	101154687				
chr16	86474524	86508859	16q24.1	16q24.1	614975	FENDRR, FOXF1AS1, TCONS_00024240	FOXF1 adjacent noncoding developmental regulatory RNA	FENDRR	400550		partial overlap with FOXF1 promoter		
chr16	86510526	86514463	16q24	16q24.1	601089	FOXF1, FKHL5, ACDMPV	Forkhead box F1	FOXF1	2294	ENSG00000103241		Alveolar capillary dysplasia with misalignment of pulmonary veins, 265380 (3), Autosomal dominant	Foxf1 (MGI:1347470)
chr16	86530175	86555839	16q24.1	16q24.1	616820	MTHFSD	Methenyltetrahydrofolate synthetase domain-containing protein	MTHFSD	64779	ENSG00000103248			Mthfsd (MGI:2679252)
chr16	86567250	86568932	16q24.3	16q24.1	602402	FOXC2, FKHL14, MFH1	Forkhead box C2	FOXC2	2303	ENSG00000176692		Lymphedema-distichiasis syndrome, 153400 (3), Autosomal dominant; Lymphedema-distichiasis syndrome with renal disease and diabetes mellitus, 153400 (3), Autosomal dominant	Foxc2 (MGI:1347481)
chr16	86578508	86581697	16q24.1	16q24.1	603252	FOXL1, FKHL11, FREAC7, FKH6	Forkhead box L1	FOXL1	2300	ENSG00000176678			Foxl1 (MGI:1347469)
chr16	87326986	87392106	16q24.3	16q24.2	609102	FBXO31, FBX31, FBXO14, FBX14, MRT45	F-box only protein 31	FBXO31	79791	ENSG00000103264	mutation identified in 1 MRT45 family	?Mental retardation, autosomal recessive 45, 615979 (3), Autosomal recessive	Fbxo31 (MGI:1354708)
chr16	87392194	87404773	16q24.2	16q24.2	609604	MAP1LC3B, LC3B	Microtubule-associated protein 1, light chain 3, beta	MAP1LC3B	81631	ENSG00000140941			Map1lc3b (MGI:1914693)
chr16	87601834	87698155	16q24.3	16q24.2	605268	JPH3, JP3, HDL2	Junctophilin 3	JPH3	57338	ENSG00000154118	mutation identified in 1 HDL2 family	?Huntington disease-like 2, 606438 (3), Autosomal dominant	Jph3 (MGI:1891497)
chr16	87830015	87869498	16q24.3	16q24.2	600182	SLC7A5, D16S469E, MPE16	Solute carrier family 7, member 5	SLC7A5	8140	ENSG00000103257			Slc7a5 (MGI:1298205)
chr16	87888012	87936574	16q24.3	16q24.2	114761	CA5A, CA5AD	Carbonic anhydrase VA (mitochondrial)	CA5A	763	ENSG00000174990	pseudogene on 16p	Hyperammonemia due to carbonic anhydrase VA deficiency, 615751 (3), Autosomal recessive	Car5a (MGI:101946)
chr16	87949215	88077317	16q24	16q24.2	611564	BANP, SMAR1	BTG3-associated nuclear protein	BANP	54971	ENSG00000172530			Banp (MGI:1889023)
chr16	88424804	88440756	16q24	16q24.2	612078	ZNF469, KIAA1858, BCS1	Zinc finger protein 469	ZNF469	84627	ENSG00000225614		Brittle cornea syndrome 1, 229200 (3), Autosomal recessive	Zfp469 (MGI:2684868)
chr16	88451781	88535165	16q24.3	16q24.2	601950	ZFPM1, FOG, FOG1	Zinc finger protein, multitype 1 (friend of GATA1)	ZFPM1	161882	ENSG00000179588			Zfpm1 (MGI:1095400)
chr16	88638592	88640473	16q24	16q24.2	604628	IL17C	Interleukin 17C	IL17C	27189	ENSG00000124391			Il17c (MGI:2446486)
chr16	88643288	88651083	16q24	16q24.2	608508	CYBA	Cytochrome b-245, alpha polypeptide	CYBA	1535	ENSG00000051523		Chronic granulomatous disease, autosomal, due to deficiency of CYBA, 233690 (3), Autosomal recessive	Cyba (MGI:1316658)
chr16	88651934	88663152	16q24.3	16q24.2	603236	MVD, MPD, POROK7	Mevalonate pyrophosphate decarboxylase	MVD	4597	ENSG00000167508		Porokeratosis 7, multiple types, 614714 (3), Autosomal dominant	Mvd (MGI:2179327)
chr16	88677681	88686473	16q24.3	16q24.2	612741	SNAI3, SNAIL3, SMUC, ZFP293	SNAIL, Drosophila, homolog of, 3	SNAI3	333929	ENSG00000185669			Snai3 (MGI:1353563)
chr16	88696494	88706420	16q24.2-q24.3	16q24.2-q24.3	617178	RNF166	RING finger protein 166	RNF166	115992	ENSG00000158717			Rnf166 (MGI:1915968)
chr16	88700000	90338345	16q24.3		612525	IHPS5	Pyloric stenosis, infantile hypertrophic, 5		100270639		between rs7197068 and rs750740	Pyloric stenosis, infantile hypertrophic, 5, 612525 (2)	
chr16	88715337	88785219	16q24.3	16q24.3	611184	PIEZO1, FAM38A, MIB, DHS, LMPH3	PIEZO1 ion channel	PIEZO1	9780	ENSG00000103335		Dehydrated hereditary stomatocytosis with or without pseudohyperkalemia and/or perinatal edema, 194380 (3), Autosomal dominant; Lymphedema, hereditary, III, 616843 (3), Autosomal recessive	Piezo1 (MGI:3603204)
chr16	88803777	88809257	16q24.3	16q24.3	605525	CDT1	Chromatin licensing and DNA replication factor 1	CDT1	81620	ENSG00000167513		Meier-Gorlin syndrome 4, 613804 (3), Autosomal recessive	Cdt1 (MGI:1914427)
chr16	88809468	88811933	16q24.3	16q24.3	102600	APRT, APRTD	Adenine phosphoribosyltransferase	APRT	353	ENSG00000198931	telomeric to GALNS, transcribed in same cen-tel direction	Adenine phosphoribosyltransferase deficiency, 614723 (3), Autosomal recessive	Aprt (MGI:88061)
chr16	88813733	88856969	16q24.3	16q24.3	612222	GALNS, MPS4A	Galactosamine (N-acetyl)-6-sulfate sulfatase	GALNS	2588	ENSG00000141012	centromeric to APRT	Mucopolysaccharidosis IVA, 253000 (3), Autosomal recessive	Galns (MGI:1355303)
chr16	88856219	88862685	16q22.1-q22.2	16q24.3	610970	TRAPPC2L	Trafficking protein particle complex 2-like	TRAPPC2L	51693	ENSG00000167515			Trappc2l (MGI:1916295)
chr16	88874854	88977148	16q24	16q24.3	603870	CBFA2T3, MTGR2, MTG16	Core-binding factor, alpha subunit 2, translocated to, 3	CBFA2T3	863	ENSG00000129993			Cbfa2t3 (MGI:1338013)
chr16	89093808	89160555	16q24.3	16q24.3	614245	ACSF3	Acyl-CoA synthetase family member 3	ACSF3	197322	ENSG00000176715		Combined malonic and methylmalonic aciduria, 614265 (3)	Acsf3 (MGI:2182591)
chr16	89171754	89195491	16q24.3	16q24.3	114019	CDH15, CDH14, CDH3, MRD3	Cadherin-15, M-cadherin (myotubule)	CDH15	1013	ENSG00000129910	tightly linked to Aprt in mouse	Mental retardation, autosomal dominant 3, 612580 (3)	Cdh15 (MGI:106672)
chr16	89267618	89490560	16q24.3	16q24.3	611192	ANKRD11, ANCO1, KBGS	Ankyrin repeat domain-containing protein 11	ANKRD11	29123	ENSG00000167522		KBG syndrome, 148050 (3), Autosomal dominant	Ankrd11 (MGI:1924337)
chr16	89508378	89557767	16q24.3	16q24.3	602783	PGN, SPG7, CMAR, CAR	Paraplegin	SPG7	6687	ENSG00000197912		Spastic paraplegia 7, autosomal recessive, 607259 (3), Autosomal recessive, Autosomal dominant	Spg7 (MGI:2385906)
chr16	89560656	89566828	16q24.3	16q24.3	113703	RPL13, BBC1, D16S44E	Ribosomal protein L13	RPL13	6137	ENSG00000167526			Rpl13-ps6,Rpl13 (MGI:3642685,MGI:105922)
chr16	89575767	89597245	16q24.3	16q24.3	605689	CPNE7	Copine VII	CPNE7	27132	ENSG00000178773			Cpne7 (MGI:2142747)
chr16	89613307	89641539	16q24.3	16q24.3	179780	DPEP1, RDP, MDP, MBD1	Dipeptidase 1	DPEP1	1800	ENSG00000015413			Dpep1 (MGI:94917)
chr16	89644430	89657784	16q24.3	16q24.3	164010	CHMP1A, PCOLN3, PRSM1, PCH8	CHMP family, member 1A	CHMP1A	5119	ENSG00000131165		Pontocerebellar hypoplasia, type 8, 614961 (3), Autosomal recessive	Chmp1a (MGI:1920159)
chr16	89657743	89670457	16q24.3	16q24.3	615409	SPATA33, C16orf55	Spermatogenesis-associated protein 33	SPATA33	124045	ENSG00000167523			Spata33 (MGI:2444920)
chr16	89686611	89696363	16q24	16q24.3	603464	CDK10, PISSLRE, ALSAS	Cyclin-dependent kinase 10	CDK10	8558	ENSG00000185324		Al Kaissi syndrome, 617694 (3), Autosomal recessive	Cdk10 (MGI:2448549)
chr16	89720367	89740924	16q24.3	16q24.3	608460	ZFP276	Zinc finger protein 276	ZNF276	92822	ENSG00000158805			Zfp276 (MGI:1888495)
chr16	89737548	89816657	16q24.3	16q24.3	607139	FANCA, FACA, FA1, FA, FAA	Fanconi anemia, complementation group A	FANCA	2175	ENSG00000187741	linkage heterogeneity	Fanconi anemia, complementation group A, 227650 (3), Autosomal recessive	Fanca (MGI:1341823)
chr16	89873585	89911383	16q24.3	16q24.3	612326	TCF25, NULP1, KIAA1049	Transcription factor 25	TCF25	22980	ENSG00000141002			Tcf25 (MGI:1914105)
chr16	89917878	89920976	16q24.3	16q24.3	155555	MC1R, SHEP2, CMM5	Melanocortin-1 receptor (alpha melanocyte-stimulating hormone receptor)	MC1R	4157	ENSG00000258839		{Albinism, oculocutaneous, type II, modifier of}, 203200 (3), Autosomal recessive; [Analgesia from kappa-opioid receptor agonist, female-specific], 613098 (3); {Melanoma, cutaneous malignant, 5}, 613099 (3); [Skin/hair/eye pigmentation 2, blond hair/fair skin], 266300 (3), Autosomal recessive; [Skin/hair/eye pigmentation 2, red hair/fair skin], 266300 (3), Autosomal recessive; {UV-induced skin damage}, 266300 (3), Autosomal recessive	Mc1r (MGI:99456)
chr16	89922008	89936096	16q24.3	16q24.3	602661	TUBB3, TUBB4, CFEOM3A, CDCBM1	Tubulin, beta-3	TUBB3	10381	ENSG00000258947		Cortical dysplasia, complex, with other brain malformations 1, 614039 (3), Autosomal dominant; Fibrosis of extraocular muscles, congenital, 3A, 600638 (3), Autosomal dominant	Tubb3 (MGI:107813)
chr16	89972579	90000786	16q24	16q24.3	603020	AFG3L1, AFG3	ATPase family gene 3, yeast, homolog of	AFG3L1P	172	ENSG00000223959			
chr16	90019628	90044970	16q24.3	16q24.3	605178	GAS8, GAS11, CILD33	Growth arrest-specific 8	GAS8	2622	ENSG00000141013		Ciliary dyskinesia, primary, 33, 616726 (3), Autosomal recessive	Gas8 (MGI:1202386)
chr16	90028907	90029900	16q24.3	16q24.3	605179	GAS8-AS1, C16orf3, EID1	GAS8 antisense RNA 1	GAS8-AS1	750				
chr16	90039760	90047782	16q24.3	16q24.3	615805	URAHP, URAH	Urate (hydroxyiso-) hydrolase, pseudogene	URAHP	100130015				
chr16	0	90338345	Chr.16		133290	ESB3	Esterase-B3	ESB3	2097				
chr16	0	90338345	Chr.16		138060	GRLL1	Glucocorticoid receptor-like 1	NR3C1P1	2910				
chr16	0	90338345	Chr.16		147573	IFNR	Interferon production regulator	IFNR	3466				
chr16	0	90338345	Chr.16		247980	LIPB	Lipase B, lysosomal acid	LIPB	3989				
chr16	0	90338345	Chr.16		118870	NHCP1	Nonhistone chromosomal protein-1	NHCP1	4805				
chr16	0	90338345	Chr.16		125260	VDI, DIPI	Vesicular stomatitis virus defective interfering particle repressor	VDI	7420				
chr17	0	10800000	17p13		608631	ASPG2	Asperger syndrome, susceptibility to, 2		431711		breakpoints between CHRNE and GP1BA	{Asperger syndrome susceptibility 2}, 608631 (2), Isolated cases, Multifactorial	
chr17	0	3400000	17p13.3		113721	BCPR	Breast cancer-related regulator of TP53					Breast cancer (1)	
chr17	0	25100000	17p		215500	CACD1	Choroidal dystrophy, central areolar 1					Choroidal dystrophy, central areolar 1, 215500 (2), Autosomal recessive	
chr17	0	10800000	17p13		601202	CTRCT24, CTAA2	Cataract 24, anterior polar	CTAA2	1484			Cataract 24, anterior polar, 601202 (2), Autosomal dominant	
chr17	0	3400000	17p13.3		615674	DDD3	Dowling-Degos disease 3		102997065		max lod at D17S1529	Dowling-Degos disease 3, 615674 (2), Autosomal dominant	
chr17	0	3400000	17p13.3		613215	DUP17p13.3, C17DUPp13.3	Chromosome 17p13.3 duplication syndrome				includes LIS1 and/or YWHAE	Chromosome 17p13.3 duplication syndrome, 613215 (4)	
chr17	0	3400000	17p13.3		247200	MDLS, MDS, MDCR, DEL17p13.3, C17DELp13.3	Miller-Dieker lissencephaly syndrome (chromosome 17p13.3 deletion syndrome)					Miller-Dieker lissencephaly syndrome, 247200 (4), Autosomal dominant	
chr17	0	16100000	17p13.3-p12		616964	MSPC	Palmoplantar carcinoma, multiple self-healing				between rs8065368 and rs2322788	Palmoplantar carcinoma, multiple self-healing, 616964 (2)	
chr17	0	10800000	17p13		605779	NDNC7	Nail disorder, nonsyndromic congenital, 7 (onychodysplasia, isolated congenital)		81866			Nail disorder, nonsyndromic congenital, 7, 605779 (2), Autosomal dominant	
chr17	0	10800000	17p13.3-p13.1		612576	SHFLD3, DUP17p13.3, C17DUPp13.3	Split-hand/foot malformation with long bone deficiency 3				max lod at or near D17S1533; contiguous gene duplication syndrome	Split-hand/foot malformation with long bone deficiency 3, 612576 (4), Autosomal dominant	
chr17	0	10800000	17p13		613498	SXGQTL1	Sex hormone-binding globulin circulating level quantitative trait locus 1		100528025		associated with rs1799941	[Sex hormone-binding globulin circulating level QTL 1], 613498 (2)	
chr17	146804	181629	17p13.3	17p13.3	604568	DOC2B	Double C2-like domain-containing protein, beta	DOC2B	8447	ENSG00000272636			Doc2b (MGI:1100497)
chr17	212148	386266	17p13.3	17p13.3	604881	RPH3AL, NOC2	Rabphilin 3A-like	RPH3AL	9501	ENSG00000181031			Rph3al (MGI:1923492)
chr17	439977	445939	17p13.3	17p13.3	615928	FAM101B, CFM1	Family with sequence similarity 101, member B	RFLNB	359845	ENSG00000183688			Rflnb (MGI:1923816)
chr17	508667	714855	17p13.3	17p13.3	615850	VPS53, HCCS1, PCH2E	Vacuolar protein sorting 53, S. cerevisiae, homolog of	VPS53	55275	ENSG00000141252		Pontocerebellar hypoplasia, type 2E, 615851 (3), Autosomal recessive	Vps53 (MGI:1915549)
chr17	732545	742967	17p13.3	17p13.3	611627	FAM57A, CT120	Family with sequence similarity 57, member A	FAM57A	79850	ENSG00000167695			Fam57a (MGI:2151840)
chr17	744420	752867	17p13.3	17p13.3	606969	GEMIN4, NEDMCR	Neurodevelopmental disorder with microcephaly, cataracts, and renal abnormalities	GEMIN4	50628	ENSG00000179409		Neurodevelopmental disorder with microcephaly, cataracts, and renal abnormalities, 617913 (3), Autosomal recessive	Gemin4 (MGI:2449313)
chr17	782328	792508	17p13.3	17p13.3	612600	RNMTL1, HC90	RNA methyltransferase-like 1	MRM3	55178	ENSG00000171861			Mrm3 (MGI:1914640)
chr17	799312	979765	17p13.3	17p13.3	612895	NXN	Nucleoredoxin	NXN	64359	ENSG00000167693			Nxn (MGI:109331)
chr17	996892	1002182	17p13.3	17p13.3	607251	TIMM22, TIM22	Translocase of inner mitochondrial membrane 22, yeast, homolog of	TIMM22	29928	ENSG00000177370			Timm22 (MGI:1929742)
chr17	1003517	1229711	17p13.3	17p13.3	600365	ABR	Active BCR-related gene	ABR	29	ENSG00000159842			Abr (MGI:107771)
chr17	1270563	1271270	17p13.3	17p13.3	615416	BHLHA9, BHLHF42, MSSD, CCSPD	Basic helix-loop-helix family, member A9	BHLHA9	727857	ENSG00000205899	mutation identified in 1 CCSPD family	?Camptosynpolydactyly, complex, 607539 (3), Autosomal recessive; Syndactyly, mesoaxial synostotic, with phalangeal reduction, 609432 (3), Autosomal recessive	Bhlha9 (MGI:2444198)
chr17	1279662	1300986	17p13.3	17p13.3	612211	TUSC5, LOST1	Tumor suppressor candidate 5	TRARG1	286753	ENSG00000184811			Tusc5 (MGI:3029307)
chr17	1344538	1400261	17p13.3	17p13.3	605066	YWHAE, MDCR, MDS	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon isoform	YWHAE	7531	ENSG00000108953			Ywhae (MGI:894689)
chr17	1421352	1456266	17p13.3	17p13.3	164762	CRK	Avian sarcoma virus CT10 (v-crk) oncogene homolog	CRK	1398	ENSG00000167193			Crk (MGI:88508)
chr17	1464185	1492706	17p13	17p13.3	606538	MYO1C	Myosin IC	MYO1C	4641	ENSG00000197879			Myo1c (MGI:106612)
chr17	1494574	1516887	17p13.3	17p13.3	607875	INPP5K, SKIP, MDCCAID	Inositol polyphosphate-5-phosphatase K	INPP5K	51763	ENSG00000132376		Muscular dystrophy, congenital, with cataracts and intellectual disability, 617404 (3), Autosomal recessive	Inpp5k (MGI:1194899)
chr17	1517988	1562815	17p13.3	17p13.3	600174	PITPNA, PITPN	Phosphotidylinositol transfer protein, alpha	PITPNA	5306	ENSG00000174238			Pitpna (MGI:99887)
chr17	1569253	1630013	17p13.3	17p13.3	610791	SLC43A2, LAT4	Solute carrier family 43 (L-type amino acid transporter, member 2	SLC43A2	124935	ENSG00000167703			Slc43a2 (MGI:2442746)
chr17	1633857	1645788	17p13.3	17p13.3	607873	SCARF1, SREC, KIAA0149	Scavenger receptor class F, member 1	SCARF1	8578	ENSG00000074660			Scarf1 (MGI:2449455)
chr17	1646149	1650097	17p13.3	17p13.3	607848	RILP	RAB-interacting lysosomal protein	RILP	83547	ENSG00000167705			Rilp (MGI:2144271)
chr17	1650628	1684881	17p13.3	17p13.3	607300	PRPF8, PRPC8, RP13	Precursor mRNA-processing factor 8, S. cerevisiae, homolog of	PRPF8	10594	ENSG00000174231		Retinitis pigmentosa 13, 600059 (3), Autosomal dominant	Prpf8 (MGI:2179381)
chr17	1713902	1713986	17p13.3	17p13.3	612077	MIR22, MIRN22	Micro RNA 22	MIR22	407004				
chr17	1716522	1738598	17p13.3	17p13.3	614218	WDR81, CAMRQ2	WD repeat-containing protein 81	WDR81	124997	ENSG00000167716		Cerebellar ataxia, mental retardation, and dysequilibrium syndrome 2, 610185 (3), Autosomal recessive	Wdr81 (MGI:2681828)
chr17	1742807	1755264	17pter-p12	17p13.3	613168	PLI, SERPINF2	Alpha-2-plasmin inhibitor	SERPINF2	5345	ENSG00000167711		Alpha-2-plasmin inhibitor deficiency, 262850 (3), Autosomal recessive	Serpinf2 (MGI:107173)
chr17	1761924	1777573	17p13.3	17p13.3	172860	SERPINF1, PEDF, OI6	Serpin peptidase inhibitor, clade F, member 1	SERPINF1	5176	ENSG00000132386	same region as RP13	Osteogenesis imperfecta, type VI, 613982 (3)	Serpinf1 (MGI:108080)
chr17	1829970	1899553	17p13.3	17p13.3	179835	RPA1	Replication protein A1, 70kD	RPA1	6117	ENSG00000132383			Rpa1 (MGI:1915525)
chr17	1934676	2025344	17p13.3	17p13.3	610461	RTN4RL1, NGRH2, NGR3	Reticulon 4 receptor-like 1	RTN4RL1	146760	ENSG00000185924			Rtn4rl1 (MGI:2661375)
chr17	2030111	2043430	17p13.3	17p13.3	603527	DPH1, DPH2L1, OVCA1, DEDSSH	DPH1, S. cerevisiae, homolog of (ovarian cancer gene 1)	DPH1	1801	ENSG00000108963		Developmental delay with short stature, dysmorphic features, and sparse hair, 616901 (3), Autosomal recessive	Dph1 (MGI:2151233)
chr17	2041982	2043430	17p13.3	17p13.3	607896	OVCA2	Ovarian cancer-associated gene 2	OVCA2	124641	ENSG00000262664			Ovca2 (MGI:2179725)
chr17	2049907	2050007	17p13.3	17p13.3	610016	MIR132, MIRN132	Micro RNA 132	MIR132	406921				
chr17	2050270	2050379	17p13.3	17p13.3	613487	MIR212, MIRN212	Micro RNA 212	MIR212	406994				
chr17	2055098	2059686	17p13.3	17p13.3	603825	HIC1	Hypermethylated in cancer	HIC1	3090	ENSG00000177374			Hic1 (MGI:1338010)
chr17	2059838	2303835	17p13.3	17p13.3	610963	SMG6, EST1A, KIAA0732	SMG6, C. elegans, homolog of	SMG6	23293	ENSG00000070366			Smg6 (MGI:2144117)
chr17	2303370	2325266	17p13.3	17p13.3	606477	SRR	Serine racemase	SRR	63826	ENSG00000167720			Srr (MGI:1351636)
chr17	2322677	2337383	17p13.3	17p13.3	611214	TSR1, KIAA1401	TSR1, 20S r RNA accumulation, S. cerevisiae, homolog of	TSR1	55720	ENSG00000167721			Tsr1 (MGI:2144566)
chr17	2336491	2381073	17p13.3	17p13.3	611418	SGSM2, KIAA0397	Small G protein signaling modulator 2	SGSM2	9905	ENSG00000141258			Sgsm2 (MGI:2144695)
chr17	2384059	2400963	17p13.3	17p13.3	603039	MNT, ROX	MAX-binding protein	MNT	4335	ENSG00000070444			Mnt (MGI:109150)
chr17	2593209	2685616	17p13.3	17p13.3	601545	PAFAH1B1, LIS1	Platelet-activating factor acetylhydrolase, isoform 1B, alpha subunit	PAFAH1B1	5048	ENSG00000007168		Lissencephaly 1, 607432 (3), Isolated cases; Subcortical laminar heterotopia, 607432 (3), Isolated cases	Pafah1b1 (MGI:109520)
chr17	2689385	2711786	17p13.3	17p13.3	616184	CLUH, CLU1, KIAA0664	Clustered mitochondria, D. discoideum, homolog of	CLUH	23277	ENSG00000132361			Cluh (MGI:1921398)
chr17	3092057	3092995	17p13.3	17p13.3	164342	OR1D2, OLFR1	Olfactory receptor, family 1, subfamily D, member 2	OR1D2	4991	ENSG00000184166	cluster of 16 genes in 350kb		Olfr412 (MGI:3030246)
chr17	3400000	10800000	17p13.2-p13.1		614341	MRT33	Mental retardation, autosomal recessive 33		100852394		between rs1367950 and rs1826925	Mental retardation, autosomal recessive 33, 614341 (2), Autosomal recessive	
chr17	3440010	3513851	17p13.2	17p13.2	617673	SPATA22	Spermatogenesis-associated protein 22	SPATA22	84690	ENSG00000141255			Spata22 (MGI:2685728)
chr17	3473645	3502533	17pter-p13	17p13.2	608034	ASPA	Aspartoacylase (aminoacylase-2)	ASPA	443	ENSG00000108381		Canavan disease, 271900 (3), Autosomal recessive	Aspa (MGI:87914)
chr17	3510501	3557994	17p13	17p13.2	607066	TRPV3, OLMS, FNEPPK2	Transient receptor potential cation channel, subfamily V, member 3	TRPV3	162514	ENSG00000167723	mutation identified in 1 FNEPPK2 family	Olmsted syndrome, 614594 (3), Autosomal dominant; ?Palmoplantar keratoderma, nonepidermolytic, focal 2, 616400 (3), Autosomal dominant	Trpv3 (MGI:2181407)
chr17	3565445	3609410	17p13	17p13.2	602076	TRPV1, VR1	Transient receptor potential cation channel, subfamily V, member 1 (vanilloid receptor 1; capsaicin receptor)	TRPV1	7442	ENSG00000196689			Trpv1 (MGI:1341787)
chr17	3608261	3636321	17p13	17p13.2	605060	SHPK, CARKL	Sedoheptulokinase	SHPK	23729	ENSG00000197417		[Sedoheptulokinase deficiency], 617213 (3), Autosomal recessive	Shpk (MGI:1921887)
chr17	3636467	3663102	17p13	17p13.2	606272	CTNS	Cystinosin	CTNS	1497	ENSG00000040531	?3 allelic forms	Cystinosis, atypical nephropathic, 219800 (3), Autosomal recessive; Cystinosis, late-onset juvenile or adolescent nephropathic, 219900 (3), Autosomal recessive; Cystinosis, nephropathic, 219800 (3), Autosomal recessive; Cystinosis, ocular nonnephropathic, 219750 (3), Autosomal recessive	Ctns (MGI:1932872)
chr17	3662892	3668678	17p13	17p13.2	616484	TAX1BP3, TIP1	TAX1-binding protein 3	TAX1BP3	30851	ENSG00000213977			Tax1bp3 (MGI:1923531)
chr17	3714624	3803765	17p13	17p13.2	604682	ITGAE, CD103	Integrin, alpha-E	ITGAE	3682	ENSG00000083457			Itgae (MGI:1298377)
chr17	3806747	3846250	17p13.2	17p13.2	616624	NCBP3, C17orf85	Nuclear cap-binding protein 3	NCBP3	55421	ENSG00000074356			Ncbp3 (MGI:1914124)
chr17	3896590	3916665	17p13.3	17p13.2	600845	P2RX1, P2X1	Purinergic receptor P2X, ligand-gated ion channel, 1	P2RX1	5023	ENSG00000108405			P2rx1 (MGI:1098235)
chr17	3923868	3964463	17p13.3	17p13.2	601929	ATP2A3, SERCA3	ATPase, Ca(2+)-transporting, ubiquitous	ATP2A3	489	ENSG00000074370			Atp2a3 (MGI:1194503)
chr17	4163817	4263994	17p13.2	17p13.2	607927	ANKFY1, ANKHZN, KIAA1255	Ankyrin repeats- and FYVE domain-containing protein 1	ANKFY1	51479	ENSG00000185722			Ankfy1 (MGI:1337008)
chr17	4269216	4366673	17p13.2	17p13.2	601569	UBE2G	Ubiquitin-conjugating enzyme E2G (UBC7, C. elegans, homolog of)	UBE2G1	7326	ENSG00000132388	possible pseudogene on 1q42		Ube2g1 (MGI:1914378)
chr17	4433923	4488203	17p13.2	17p13.2	611701	SPNS3	Spinster, Drosophila, homolog of, 3	SPNS3	201305	ENSG00000182557			Spns3 (MGI:1924827)
chr17	4498842	4539036	17p13.2	17p13.2	612584	SPNS2	Spinster, Drosophila, homolog of, 2	SPNS2	124976	ENSG00000183018			Spns2 (MGI:2384936)
chr17	4538895	4555385	17p13.3	17p13.2	604885	MYBBP1A, P160	MYB-binding protein 1A	MYBBP1A	10514	ENSG00000132382			Mybbp1a (MGI:106181)
chr17	4556926	4560919	17p13.2	17p13.2	612341	GGT6	Gamma-glutamyltransferase 6	GGT6	124975	ENSG00000167741			Ggt6 (MGI:1918772)
chr17	4630918	4641672	17p13.3	17p13.2	152392	ALOX15	Arachidonate 15-lipoxygenase	ALOX15	246	ENSG00000161905			Alox15 (MGI:87997)
chr17	4671383	4704336	17p13.3	17p13.2	609455	PELP1, MNAR	Proline-, glutamic acid-, and leucine-rich protein 1	PELP1	27043	ENSG00000141456			Pelp1 (MGI:1922523)
chr17	4710493	4721499	17p13	17p13.2	107941	ARRB2	Arrestin, beta 2	ARRB2	409	ENSG00000141480			Arrb2 (MGI:99474)
chr17	4731407	4733609	17p13.2	17p13.2	612383	MED11	Mediator complex subunit 11	MED11	400569	ENSG00000161920			Med11 (MGI:1913422)
chr17	4733528	4739927	17p13	17p13.2	605398	CXCL16	CXC chemokine ligand-16	CXCL16	58191	ENSG00000161921			Cxcl16 (MGI:1932682)
chr17	4740014	4746118	17p13.2	17p13.2	614312	ZMYND15, SPGF14	Zinc finger MYND-containing protein 15	ZMYND15	84225	ENSG00000141497	mutation identified in 1 SPGF14 family	?Spermatogenic failure 14, 615842 (3), Autosomal recessive	Zmynd15 (MGI:3603821)
chr17	4771891	4783210	17p13.3	17p13.2	604657	TM4SF5	Transmembrane 4 superfamily, member 5	TM4SF5	9032	ENSG00000142484			Tm4sf5 (MGI:1922854)
chr17	4796143	4798502	17p13.2	17p13.2	600307	PSMB6, LMPY	Proteasome subunit, beta-type, 6	PSMB6	5694	ENSG00000142507			Psmb6 (MGI:104880)
chr17	4807100	4823431	17p13.1	17p13.2	602384	PLD2	Phospholipase D2	PLD2	5338	ENSG00000129219			Pld2 (MGI:892877)
chr17	4833339	4898060	17p13.1	17p13.2	609426	MINK1, MINK	Misshapen/nik-related kinase 1	MINK1	50488	ENSG00000141503			Mink1 (MGI:1355329)
chr17	4897768	4905018	17p13-p12	17p13.2	100725	CHRNE, SCCMS, CMS4A, CMS4B, CMS4C	Cholinergic receptor, nicotinic, epsilon polypeptide	CHRNE	1145	ENSG00000108556		Myasthenic syndrome, congenital, 4A, slow-channel, 605809 (3), Autosomal recessive, Autosomal dominant; Myasthenic syndrome, congenital, 4B, fast-channel, 616324 (3), Autosomal recessive; Myasthenic syndrome, congenital, 4C, associated with acetylcholine receptor deficiency, 608931 (3), Autosomal recessive	Chrne (MGI:87894)
chr17	4932274	4935029	17pter-p12	17p13.2	606672	GP1BA, BSS, BDPLT1, VWDP, BDPLT3	Glycoprotein Ib, platelet, alpha polypeptide	GP1BA	2811	ENSG00000185245		Bernard-Soulier syndrome, type A1 (recessive), 231200 (3), Autosomal recessive; Bernard-Soulier syndrome, type A2 (dominant), 153670 (3), Autosomal dominant; {Nonarteritic anterior ischemic optic neuropathy, susceptibility to}, 258660 (3), Autosomal recessive; von Willebrand disease, platelet-type, 177820 (3), Autosomal dominant	Gp1ba (MGI:1333744)
chr17	4937129	4940250	17p13.3	17p13.2	604165	SLC25A11, SLC20A4, OGC	Solute carrier family 25 (mitochondrial carrier; oxoglutarate carrier), member 11	SLC25A11	8402	ENSG00000108528			Slc25a11 (MGI:1915113)
chr17	4940007	4945222	17p13.2	17p13.2	610431	RNF167, RING105	RING finger protein 167	RNF167	26001	ENSG00000108523			Rnf167 (MGI:1917760)
chr17	4945649	4949087	17p13.3	17p13.2	176610	PFN1, ALS18	Profilin-1	PFN1	5216	ENSG00000108518		Amyotrophic lateral sclerosis 18, 614808 (3)	Pfn1 (MGI:97549)
chr17	4949181	4957130	17pter-p12	17p13.2	131370	ENO3, GSD13	Enolase-3, beta, muscle	ENO3	2027	ENSG00000108515	mutation identified in 1 GSD13 patient	?Glycogen storage disease XIII, 612932 (3), Autosomal recessive	Eno3 (MGI:95395)
chr17	4959225	4967836	17p13.2	17p13.2	610056	SPAG7	Sperm-associated antigen 7	SPAG7	9552	ENSG00000091640			Spag7 (MGI:107380)
chr17	4967991	4988280	17p13.2	17p13.2	611508	CAMTA2, KIAA0909	Calmodulin-binding transcription activator 2	CAMTA2	23125	ENSG00000108509			Camta2 (MGI:2135957)
chr17	4988129	5006092	17p13	17p13.2	617374	INCA1, HSD45	Inhibitor of CDK, cyclin A1-interacting protein 1	INCA1	388324	ENSG00000196388			Inca1 (MGI:2144284)
chr17	4997947	5028398	17p13.2	17p13.2	603060	KIF1C, LTXS1, KIAA0706, SPAX2	Kinesin family member 1C	KIF1C	10749	ENSG00000129250		Spastic ataxia 2, autosomal recessive, 611302 (3), Autosomal recessive	Kif1c (MGI:1098260)
chr17	5032601	5035431	17p13.2	17p13.2	607883	SLC52A1, GPR172B, GPCR42, PAR2, FLJ10060, RBFVD	Solute carrier family 52, riboflavin transporter, member 1	SLC52A1	55065	ENSG00000132517		Riboflavin deficiency, 615026 (3), Autosomal dominant	
chr17	5078458	5096373	17pter-p12	17p13.2	194480	ZFP3	Zinc finger protein-3	ZFP3	124961	ENSG00000180787	probably in cluster with ZNF29 proximal to TP53		Zfp3 (MGI:99177)
chr17	5105733	5123115	17p13.2	17p13.2	616463	ZNF232, ZSCAN11	Zinc finger protein 232	ZNF232	7775	ENSG00000167840			
chr17	5116437	5175031	17p13	17p13.2	604334	USP6, TRE2	Ubiquitin-specific protease 6	USP6	9098	ENSG00000129204			
chr17	5208919	5234859	17p13.2	17p13.2	614406	SCIMP, C17orf87	SLP adaptor- and CSK-interacting membrane protein	SCIMP	388325	ENSG00000161929			Scimp (MGI:3610314)
chr17	5282262	5386339	17p13	17p13.2	603616	RABEP1, RABPT5	RAB GTPase-binding effector protein 1	RABEP1	9135	ENSG00000029725	fused to PDGFRB in CMML		Rabep1 (MGI:1860236)
chr17	5384832	5419738	17p13	17p13.2	602552	NUP88	Nucleoporin, 88-kD	NUP88	4927	ENSG00000108559			Nup88 (MGI:104900)
chr17	5419640	5433019	17p13	17p13.2	617299	RPAIN, RIP	RPA-interacting protein	RPAIN	84268	ENSG00000129197			Rpain (MGI:1916973)
chr17	5432778	5439150	17p13.3	17p13.2	601269	C1QBP, HABP1, COXPD33	Complement component C1q binding protein (hyaluronic acid-binding protein 1)	C1QBP	708	ENSG00000108561		Combined oxidative phosphorylation deficiency 33, 617713 (3), Autosomal recessive	C1qbp (MGI:1194505)
chr17	5440911	5469059	17p13.2	17p13.2	614405	DHX33	DEAH box polypeptide 33	DHX33	56919	ENSG00000005100			Dhx33 (MGI:2445102)
chr17	5471250	5486229	17p13.2	17p13.2	610304	DERL2	DER1-like domain family, member 2	DERL2	51009	ENSG00000072849			Derl2 (MGI:2151483)
chr17	5486373	5490813	17p13.2	17p13.2	609178	MIS12	Mis12, S. pombe, homolog of	MIS12	79003	ENSG00000167842			Mis12 (MGI:1914389)
chr17	5501398	5584511	17p13	17p13.2	606636	NLRP1, NALP1, KIAA0926, DEFCAP, CARD7, SLEV1, VAMAS1, MSPC, AIADK	NLR family, pyrin domain containing 1	NLRP1	22861	ENSG00000091592		Autoinflammation with arthritis and dyskeratosis, 617388 (3), Autosomal recessive, Autosomal dominant; Palmoplantar carcinoma, multiple self-healing, 615225 (3), Autosomal dominant; {Vitiligo-associated multiple autoimmune disease susceptibility 1}, 606579 (3)	Nlrp1b (MGI:3582959)
chr17	6423736	6435198	17p13.1	17p13.2	604392	AIPL1, LCA4	Arylhydrocarbon-interacting receptor protein-like 1	AIPL1	23746	ENSG00000129221	LCA1 due to GUCY2D mutation also on 17p13.1	Cone-rod dystrophy, 604393 (3), Autosomal recessive; Leber congenital amaurosis 4, 604393 (3), Autosomal recessive; Retinitis pigmentosa, juvenile, 604393 (3), Autosomal recessive	Aipl1 (MGI:2148800)
chr17	6444414	6451064	17p13.2	17p13.2	617611	PIMREG, RCS1, FAM64A	PICALM-interacting mitotic regulator	PIMREG	54478	ENSG00000129195			Pimreg (MGI:1924434)
chr17	6451262	6556556	17p13.1	17p13.2-p13.1	608921	PITPNM3, NIR1, CORD5	Phosphatidylinositol transfer protein, membrane-associated, 3	PITPNM3	83394	ENSG00000091622		Cone-rod dystrophy 5, 600977 (3), Autosomal dominant	Pitpnm3 (MGI:2685726)
chr17	6500000	10800000	17p13.1		613776	DEL17p13.1, C17DELp13.1	Chromosome 17p13.1 deletion syndrome				contiguous gene deletion syndrome	Chromosome 17p13.1 deletion syndrome, 613776 (4), Autosomal dominant	
chr17	6578150	6640926	17p13.1	17p13.1	617112	KIAA0753, OFIP, OFD15	KIAA0753 gene	KIAA0753	9851	ENSG00000198920	mutation identified in 1 OFD15 patient	?Orofaciodigital syndrome XV, 617127 (3), Autosomal recessive	4933427D14Rik (MGI:1921727)
chr17	6640901	6644540	17p13.1	17p13.1	616967	TXNDC17, TRP14, TXNL5	Thioredoxin domain-containing protein 17	TXNDC17	84817	ENSG00000129235			Txndc17 (MGI:1289248)
chr17	6684712	6713420	17p13-p12	17p13.1	608305	SLC13A5, NACT, EIEE25	Solute carrier family 13 (sodium-dependent citrate transporter), member 5	SLC13A5	284111	ENSG00000141485		Epileptic encephalopathy, early infantile, 25, 615905 (3), Autosomal recessive	Slc13a5 (MGI:3037150)
chr17	6755407	6775646	17p13.2	17p13.1	606717	XAF1	XIAP-associated factor 1	XAF1	54739	ENSG00000132530			Xaf1 (MGI:3772572)
chr17	6776232	6787645	17p13.2	17p13.1	609106	FBXO39, FBX39	F-box protein 39	FBXO39	162517	ENSG00000177294			Fbxo39 (MGI:3505735)
chr17	6799980	6831740	17p13.1	17p13.1	609002	TEKT1	Tektin 1	TEKT1	83659	ENSG00000167858			Tekt1 (MGI:1333819)
chr17	6993790	7010735	17p13.1	17p13.1	152391	ALOX12	Arachidonate 12-lipoxygenase	ALOX12	239	ENSG00000108839	pseudogene also on chr.17		Alox12 (MGI:87998)
chr17	7012416	7014532	17p13.1	17p13.1	617098	RNASEK	Ribonuclease K	RNASEK	440400	ENSG00000219200			Rnasek (MGI:106369)
chr17	7014736	7017523	17p13.1	17p13.1	617215	C17orf49, BAP18	Chromosome 17 open reading frame 49	C17orf49	124944	ENSG00000258315			0610010K14Rik (MGI:1915609)
chr17	7017614	7017700	17p13.1	17p13.1	610718	MIR195, MIRN195	Micro RNA 195	MIR195	406971				
chr17	7017910	7018021	17p13.1	17p13.1	615672	MIR497	Micro RNA 497	MIR497	574456				
chr17	7023049	7029641	17p13.1	17p13.1	608992	BCL6B, BAZF	B-cell lymphoma 6B	BCL6B	255877	ENSG00000161940			Bcl6b (MGI:1278332)
chr17	7041629	7044410	17p13.2	17p13.1	615765	SLC16A11, MCT11	Solute carrier family 16, member 11	SLC16A11	162515	ENSG00000174326			Slc16a11 (MGI:2663709)
chr17	7074536	7080306	17p13.1	17p13.1	605999	CLEC10A, CLECSF14, MGL, HML, CD301	C-type lectin domain family 10, member A	CLEC10A	10462	ENSG00000132514			Clec10a,Mgl2 (MGI:2385729,MGI:96975)
chr17	7101321	7115537	17p	17p13.1	108361	ASGR2	Asialoglycoprotein receptor-2	ASGR2	433	ENSG00000161944			Asgr2 (MGI:88082)
chr17	7173430	7179563	17p13-p11	17p13.1	108360	ASGR1	Asialoglycoprotein receptor-1	ASGR1	432	ENSG00000141505			Asgr1 (MGI:88081)
chr17	7189889	7220049	17p13.1	17p13.1	602887	DLG4, PSD95, SAP90	Discs large, Drosophila, homolog of, 4	DLG4	1742	ENSG00000132535			Dlg4 (MGI:1277959)
chr17	7217124	7225266	17p13	17p13.1	609575	ACADVL, VLCAD	Acyl-Coenzyme A dehydrogenase, very long chain	ACADVL	37	ENSG00000072778		VLCAD deficiency, 201475 (3), Autosomal recessive	Acadvl (MGI:895149)
chr17	7225340	7234543	17p13.1	17p13.1	602151	DVL2	Dishevelled 2	DVL2	1856	ENSG00000004975			Dvl2 (MGI:106613)
chr17	7235027	7239655	17p13	17p13.1	612910	PHF23	PHD finger protein 23	PHF23	79142	ENSG00000040633			Phf23 (MGI:1925496)
chr17	7240418	7242433	17p13.1	17p13.1	605125	GABARAP	GABA-A receptor-associated protein	GABARAP	11337	ENSG00000170296			Gabarap (MGI:1861742)
chr17	7243586	7251939	17p13.1	17p13.1	610684	CTDNEP1, DULLARD	C-terminal domain nuclear envelope phosphatase 1	CTDNEP1	23399	ENSG00000175826			Ctdnep1 (MGI:1914431)
chr17	7251736	7259939	17p13.1	17p13.1	615019	ELP5, DERP6, C17orf81	Elongator acetyltransferase complex, subunit 5	ELP5	23587	ENSG00000170291			Elp5 (MGI:1859017)
chr17	7281734	7288047	17p13	17p13.1	138190	SLC2A4, GLUT4	Solute carrier family 2 (facilitated glucose transporter), member 4	SLC2A4	6517	ENSG00000181856			Slc2a4 (MGI:95758)
chr17	7288251	7294556	17p13.1	17p13.1	611447	YBX2, MSY2, CSDA3, DBPC	Y box-binding protein 2	YBX2	51087	ENSG00000006047			Ybx2 (MGI:1096372)
chr17	7306998	7312462	17p13-p12	17p13.1	600187	EIF5A	Eukaryotic translation initiation factor-5A	EIF5A	1984	ENSG00000132507			Eif5a (MGI:106248)
chr17	7312658	7315338	17p13.1	17p13.1	601935	GPS2	G protein pathway suppressor 2	GPS2	2874	ENSG00000132522			Gps2 (MGI:1891751)
chr17	7315631	7329318	17p13.1	17p13.1	615865	NEURL4, KIAA1787	Neuralized E3 ubiquitin protein ligase 4	NEURL4	84461	ENSG00000215041			Neurl4 (MGI:1921092)
chr17	7351888	7354943	17p13.2	17p13.1	609848	KCTD11, REn	Potassium channel tetramerization domain-containing protein 11	KCTD11	147040	ENSG00000213859			Kctd11 (MGI:2448712)
chr17	7336505	7354943	Chr.17	17p13.1	607763	CENTB1, KIAA0050, ACAP1	Centaurin, beta-1	ACAP1	9744	ENSG00000072818			Acap1 (MGI:2388270)
chr17	7354967	7357218	17p13.1	17p13.1	617814	TMEM95	Transmembrane protein 95	TMEM95	339168	ENSG00000182896			Tmem95 (MGI:3779488)
chr17	7380558	7389963	17p13.1	17p13.1	608076	TNK1	Tyrosine kinase, nonreceptor, 1	TNK1	8711	ENSG00000174292			Tnk1 (MGI:1930958)
chr17	7389726	7394842	17p13.1	17p13.1	607611	PLSCR3	Phospholipid scramblase 3	PLSCR3	57048	ENSG00000187838			Plscr3 (MGI:1917560)
chr17	7402973	7404137	17p13.1	17p13.1	617779	TMEM256, C17orf61	Transmembrane protein 256	TMEM256	254863	ENSG00000205544			Tmem256 (MGI:1916436)
chr17	7405491	7419863	Chr.17	17p13.1	606479	NLGN2, KIAA1366	Neuroligin 2	NLGN2	57555	ENSG00000169992			Nlgn2 (MGI:2681835)
chr17	7420359	7421631	17p13.1	17p13.1	615116	SPEM1, C17orf83	Spermatid maturation protein 1	SPEM1	374768	ENSG00000181323			Spem1 (MGI:1921538)
chr17	7435442	7437678	17p13.1	17p13.1	613936	TMEM102, CBAP	Transmembrane protein 102	TMEM102	284114	ENSG00000181284			Tmem102 (MGI:1921591)
chr17	7438272	7444931	17q21	17p13.1	601514	FGF11, FHF3	Fibroblast growth factor-11	FGF11	2256	ENSG00000161958			Fgf11 (MGI:109167)
chr17	7445086	7457612	17p12-p11	17p13.1	100710	CHRNB1, ACHRB, SCCMS, CMS2A, CMS2C	Cholinergic receptor, nicotinic, beta polypeptide-1, muscle	CHRNB1	1140	ENSG00000170175	mutation identified in 1 CMS2C family	Myasthenic syndrome, congenital, 2A, slow-channel, 616313 (3), Autosomal dominant; ?Myasthenic syndrome, congenital, 2C, associated with acetylcholine receptor deficiency, 616314 (3), Autosomal recessive	Chrnb1 (MGI:87890)
chr17	7459365	7484248	17p13.1	17p13.1	612308	ZBTB4, KIAA1538	Zinc finger and BTB domain-containing 4	ZBTB4	57659	ENSG00000174282			Zbtb4 (MGI:1922830)
chr17	7484378	7514617	17p13.1	17p13.1	180660	POLR2A, RPOL2	Polymerase (RNA) II (DNA directed) polypeptide A, 220kD	POLR2A	5430				Polr2a (MGI:98086)
chr17	7549057	7557889	17p13.3	17p13.1	602695	TNFSF12, TWEAK, APO3L, DR3LG	Tumor necrosis factor ligand superfamily, member 12	TNFSF12	8742	ENSG00000239697			Tnfsf12 (MGI:1196259)
chr17	7558291	7561607	17p13.1	17p13.1	604472	TNFSF13, APRIL, TALL2	Tumor necrosis factor ligand superfamily, member 13	TNFSF13	8741	ENSG00000161955			Tnfsf13 (MGI:1916833)
chr17	7561991	7571968	17p13.1	17p13.1	612844	SENP3	Sentrin-specific protease family, member 3	SENP3	26168	ENSG00000161956			Senp3 (MGI:2158736)
chr17	7572705	7579005	17p13	17p13.1	602641	EIF4A1, DDX2A	Eukaryotic translation initiation factor 4A, isoform 1	EIF4A1	1973	ENSG00000161960			Eif4a1 (MGI:95303)
chr17	7579486	7582110	17p13	17p13.1	153634	CD68	Macrophage antigen CD68 (macrosialin)	CD68	968	ENSG00000129226			Cd68 (MGI:88342)
chr17	7583646	7588211	17p13.1-p12	17p13.1	604041	MPDU1, SL15, CDGIF	Mannose-P-dolichol utilization defect 1	MPDU1	9526	ENSG00000129255		Congenital disorder of glycosylation, type If, 609180 (3), Autosomal recessive	Mpdu1 (MGI:1346040)
chr17	7588179	7590169	17p13	17p13.1	601297	SOX15, SOX20	SRY (sex-determining region Y)-box 15	SOX15	6665	ENSG00000129194			Sox15 (MGI:98363)
chr17	7591229	7614896	17p13.1	17p13.1	605339	FXR2	Fragile X mental retardation, autosomal homolog-2	FXR2	9513	ENSG00000129245			Fxr2 (MGI:1346074)
chr17	7614063	7633382	17p13-p12	17p13.1	182205	SHBG, ABP	Sex hormone-binding globulin (androgen binding protein)	SHBG	6462	ENSG00000129214			Shbg (MGI:98295)
chr17	7626233	7627877	17p13.1	17p13.1	611463	SAT2, SSAT2	Spermidine/spermine N(1)-acetyltransferase 2	SAT2	112483	ENSG00000141504			Sat2 (MGI:1916465)
chr17	7646626	7657770	17p	17p13.1	182331	ATP1B2, AMOG	ATPase, Na+K+ transporting, beta-2 polypeptide	ATP1B2	482	ENSG00000129244			Atp1b2 (MGI:88109)
chr17	7668401	7687549	17p13.1	17p13.1	191170	TP53, P53, LFS1 , BCC7	Tumor protein p53	TP53	7157	ENSG00000141510		Adrenal cortical carcinoma, 202300 (3), Autosomal recessive; {Basal cell carcinoma 7}, 614740 (3); Breast cancer, 114480 (3), Autosomal dominant; Choroid plexus papilloma, 260500 (3), Autosomal dominant; Colorectal cancer, 114500 (3), Autosomal dominant; {Glioma susceptibility 1}, 137800 (3), Autosomal dominant, Somatic mutation; Hepatocellular carcinoma, 114550 (3), Somatic mutation; Li-Fraumeni syndrome, 151623 (3), Autosomal dominant; Nasopharyngeal carcinoma, 607107 (3); Osteosarcoma, 259500 (3), Autosomal recessive; Pancreatic cancer, 260350 (3), Autosomal dominant, Somatic mutation, Multifactorial	Trp53 (MGI:98834)
chr17	7686070	7703501	17p13	17p13.1	612661	WRAP53, TCAB1, WDR79, DKCB3	WD repeat-containing protein antisense to TP53	WRAP53	55135	ENSG00000141499		Dyskeratosis congenita, autosomal recessive 3, 613988 (3), Autosomal recessive	Wrap53 (MGI:2384933)
chr17	7705201	7711374	17p13.1-p11.2	17p13.1	602297	EFNB3, EPLG8, LERK8, EFL6	Ephrin B3	EFNB3	1949	ENSG00000108947			Efnb3 (MGI:109196)
chr17	7717353	7833743	17p13	17p13.1	603333	DNAH2, DNAHC2	Dynein, axonemal, heavy chain-2	DNAH2	146754	ENSG00000183914			Dnah2 (MGI:107731)
chr17	7834209	7854795	17p13.1	17p13.1	611577	KDM6B, JMJD3, KIAA0346	Lysine-specific demethylase 6B	KDM6B	23135	ENSG00000132510			Kdm6b (MGI:2448492)
chr17	7854885	7856098	17p13.1	17p13.1	617813	TMEM88	Transmembrane protein 88	TMEM88	92162	ENSG00000167874			Tmem88 (MGI:1914270)
chr17	7884763	7912756	17p13	17p13.1	602120	CHD3	Chromodomain helicase DNA binding protein-3	CHD3	1107	ENSG00000170004			Chd3 (MGI:1344395)
chr17	7921858	7930345	17p13.1	17p13.1	604111	KCNAB3, KCNA3B	Potassium voltage-gated channel, shaker-related subfamily, beta member 3	KCNAB3	9196	ENSG00000170049			Kcnab3 (MGI:1336208)
chr17	7930344	7931998	17p13	17p13.1	610969	TRAPPC1, MUM2, BET5	Trafficking protein particle complex, subunit 1	TRAPPC1	58485	ENSG00000170043			Trappc1 (MGI:1098727)
chr17	7932053	7949918	17p13.1	17p13.1	611425	CNTROB, LIP8	Centrosomal BRCA2-interacting protein	CNTROB	116840	ENSG00000170037			Cntrob (MGI:2443290)
chr17	8002669	8020339	17p13.1	17p13.1	600179	GUCY2D, GUC2D, LCA1, CORD6, RCD2, CACD1	Guanylate cyclase 2D, membrane, retina-specific	GUCY2D	3000	ENSG00000132518	mutation identified in 1 CACD1 family	?Central areolar choroidal dystrophy 1, 215500 (3), Autosomal recessive; Cone-rod dystrophy 6, 601777 (3), Autosomal recessive, Autosomal dominant; Leber congenital amaurosis 1, 204000 (3), Autosomal recessive	Gucy2e (MGI:105123)
chr17	8039039	8049133	17p13.1	17p13.1	603697	ALOX15B	Arachidonate 15-lipoxygenase, second type	ALOX15B	247	ENSG00000179593			Alox8 (MGI:1098228)
chr17	8072635	8087702	17p13.1	17p13.1	603741	ALOX12B, ARCI2	Archidonate 12-lipoxygenase, R type	ALOX12B	242	ENSG00000179477		Ichthyosis, congenital, autosomal recessive 2, 242100 (3), Autosomal recessive	Alox12b (MGI:1274782)
chr17	8095899	8118915	17p13.1	17p13.1	607206	ALOXE3, ARCI3	Arachidonate lipoxygenase 3	ALOXE3	59344	ENSG00000179148		Ichthyosis, congenital, autosomal recessive 3, 606545 (3), Autosomal recessive	Aloxe3 (MGI:1345140)
chr17	8119154	8119226	17p13.1	17p13.1	189918	TRNAK1, TRK1, TRK-TTT3-4	Transfer RNA lysine (TTT) 3-4	TRK-TTT3-5	7206				
chr17	8119751	8119822	17p13.1	17p13.1	189919	TRNAQ1, TRQ1	tRNA glutamine-1	TRQ-CTG1-5	7228				
chr17	8120313	8120394	17p13.1	17p13.1	189920	TRNAL2, TRL2	tRNA leucine-2	TRL-TAG1-1	7208				
chr17	8120589	8126031	17p13.2	17p13.1	608059	HES7, SCDO4	Hairy/enhancer of split, Drosophila, homolog of, 7	HES7	84667	ENSG00000179111		Spondylocostal dysostosis 4, autosomal recessive, 613686 (3), Autosomal recessive	Hes7 (MGI:2135679)
chr17	8120924	8121011	17p13.1	17p13.1	610406	TRNAR1, TRR1	tRNA arginine-1	TRR-TCT2-1	7230				
chr17	8125745	8125815	17p13.1	17p13.1	610407	TRNAG2, TRG2	tRNA glycine-2	TRG-GCC2-6	7196		at least 8 copies in this region		
chr17	8140469	8156359	17p12	17p13.1	602260	PER, RIGUI	Period, Drosophila, homolog of	PER1	5187	ENSG00000179094			Per1 (MGI:1098283)
chr17	8159146	8162974	17p12	17p13.1	185881	VAMP2, SYB2	Vesicle-associated membrane protein-2 (synaptobrevin-2)	VAMP2	6844	ENSG00000220205			Vamp2 (MGI:1313277)
chr17	8172459	8176410	17p13.1	17p13.1	616183	TMEM107, MKS13, JBTS29	Transmembrane protein 107	TMEM107	84314	ENSG00000179029	mutation identified in 1 JBTS29	?Joubert syndrome 29, 617562 (3), Autosomal recessive; Meckel syndrome 13, 617562 (3), Autosomal recessive; Orofaciodigital syndrome XVI, 617563 (3), Autosomal recessive	Tmem107 (MGI:1914160)
chr17	8173452	8173587	17p13.1	17p13.1	616663	SNORD118, LCC	Small nucleolar RNA,  C/D box, 118	SNORD118	727676			Leukoencephalopathy, brain calcifications, and cysts, 614561 (3), Autosomal recessive	
chr17	8188332	8190245	17p13.1	17p13.1	616599	BORCS6, C17orf59, LYSPERSIN	BLOC1-related complex, subunit 6	BORCS6	54785	ENSG00000196544			Borcs6 (MGI:1919173)
chr17	8204730	8210766	17p13.1	17p13.1	604970	STK12, ARK2, AIK2, AIM1	Serine/threonine protein kinase 12	AURKB	9212	ENSG00000178999			Aurkb (MGI:107168)
chr17	8224820	8248094	17p13.1	17p13.1	613129	CTC1, CRMCC, C17orf68, AAF132	Conserved telomere maintenance component 1	CTC1	80169	ENSG00000178971		Cerebroretinal microangiopathy with calcifications and cysts, 612199 (3), Autosomal recessive	Ctc1 (MGI:1916214)
chr17	8247595	8270490	Chr.17	17p13.1	602133	PFAS, FGARAT	phosphoribosylformylglycinamidine synthase (FGAR amidotransferase)	PFAS	5198	ENSG00000178921			Pfas (MGI:2684864)
chr17	8287762	8295688	17p13.1	17p13.1	610818	SLC25A35	Solute carrier family 25, member 35	SLC25A35	399512	ENSG00000125434			Slc25a35 (MGI:1919248)
chr17	8288496	8290091	17p13.1	17p13.1	607954	RANGRF, MOG1	RAN guanine nucleotide release factor	RANGRF	29098	ENSG00000108961			Rangrf (MGI:1889073)
chr17	8310237	8322515	17p13.1	17p13.1	608504	ARGEF15, KIAA0915	Rho guanine nucleotide exchange factor 15	ARHGEF15	22899	ENSG00000198844			Arhgef15 (MGI:3045246)
chr17	8339839	8346047	17p13.1	17p13.1	610097	ODF4, OPPO1	Outer dense fiber of sperm tails 4	ODF4	146852	ENSG00000184650			Odf4 (MGI:2182079)
chr17	8377515	8383249	17p	17p13.1	603704	RPL26, DBA11	Ribosomal protein L26	RPL26	6154	ENSG00000161970	mutation identified in 1 family	?Diamond-Blackfan anemia 11, 614900 (3), Autosomal dominant	Rpl26 (MGI:106022)
chr17	8435851	8472743	Chr.17	17p13.1	607538	NUDEL	Nude-like protein (endooligopeptidase A)	NDEL1	81565	ENSG00000166579			Ndel1 (MGI:1932915)
chr17	8474204	8631368	17p13	17p13.1	160776	MYH10	Myosin, heavy polypeptide-10, non-muscle	MYH10	4628	ENSG00000133026			Myh10 (MGI:1930780)
chr17	8747531	8759427	17p13.1	17p13.1	617628	SPDYE4	SPEEDY/RINGO cell cycle regulator family, member E4	SPDYE4	388333	ENSG00000183318			
chr17	8802722	8870002	17p13.1	17p13.1	611462	PIK3R6, C17orf38	Phosphatidylinositol 3-kinase, regulatory subunit 6	PIK3R6	146850	ENSG00000276231			Pik3r6 (MGI:2144613)
chr17	8878915	8965711	17p13.1	17p13.1	611317	PIK3R5, p101	Phosphatidylinositol 3-kinase, regulatory subunit 5	PIK3R5	23533	ENSG00000141506		Ataxia-oculomotor apraxia 3, 615217 (3), Autosomal recessive	Pik3r5 (MGI:2443588)
chr17	9021541	9243999	17p13.1	17p13.1	601614	NTN1, NTN1L	Netrin 1, mouse, homolog of	NTN1	9423	ENSG00000065320			Ntn1 (MGI:105088)
chr17	9250470	9575957	17p12	17p13.1	604203	STX8	Syntaxin 8	STX8	9482	ENSG00000170310			Stx8 (MGI:1890156)
chr17	9576626	9643458	17p13.1	17p13.1	609804	WDR16, WDRPUH	WD repeat-containing protein 16	CFAP52	146845	ENSG00000166596			Cfap52 (MGI:1919110)
chr17	9771433	9791296	17p13.1	17p13.1	616161	DHRS7C, SDR32C2	Short-chain dehydrogenase reductase family, member 7C	DHRS7C	201140	ENSG00000184544			Dhrs7c (MGI:1915710)
chr17	9825507	9894162	17p13.3	17p13.1	603659	GLP2R	Glucagon-like peptide 2 receptor	GLP2R	9340	ENSG00000065325			Glp2r (MGI:2136733)
chr17	9897709	9905366	17p13.1	17p13.1	179618	RCV1	Recoverin	RCVRN	5957	ENSG00000109047			Rcvrn (MGI:97883)
chr17	9910608	10198550	17p	17p13.1	603127	GAS7	Growth arrest-specific 7	GAS7	8522	ENSG00000007237			Gas7 (MGI:1202388)
chr17	10300865	10373004	17p13.1-p12	17p13.1	603487	MYH13	Myosin, heavy polypeptide 13, skeletal muscle	MYH13	8735	ENSG00000006788			Myh13 (MGI:1339967)
chr17	10390324	10421949	17p13.1	17p13.1	160741	MYH8, DA7	Myosin, heavy polypeptide-8, skeletal muscle, perinatal	MYH8	4626	ENSG00000133020		Carney complex variant, 608837 (3); Trismus-pseudocamptodactyly syndrome, 158300 (3), Autosomal dominant	Myh8 (MGI:1339712)
chr17	10443057	10469558	17p13.1	17p13.1	160742	MYH4	Myosin, heavy polypeptide-4, skeletal muscle	MYH4	4622	ENSG00000264424			Myh4 (MGI:1339713)
chr17	10492306	10518718	17p13.1	17p13.1	160730	MYH1	Myosin, heavy polypeptide-1, skeletal muscle, adult	MYH1	4619	ENSG00000109061	cluster = 6 genes in 500kb		Myh1 (MGI:1339711)
chr17	10521147	10549699	17p13.1	17p13.1	160740	MYH2, MYPOP	Myosin, heavy polypeptide-2, skeletal muscle, adult	MYH2	4620	ENSG00000125414		Proximal myopathy and ophthalmoplegia, 605637 (3), Autosomal recessive, Autosomal dominant	Myh2 (MGI:1339710)
chr17	10628525	10678346	17p13.1	17p13.1	160720	MYH3, DA2A, DA2B, DA8	Myosin, heavy polypeptide-3, skeletal muscle, embryonic	MYH3	4621	ENSG00000109063		Arthrogryposis, distal, type 2A, 193700 (3), Autosomal dominant; Arthrogryposis, distal, type 2B, 601680 (3), Autosomal dominant; Arthrogryposis, distal, type 8, 178110 (3), Autosomal dominant	Myh3 (MGI:1339709)
chr17	10672473	10697567	17p13-p12	17p13.1	603644	SCO1, SCOD1	SCO1 cytochrome c oxidase assembly protein	SCO1	6341	ENSG00000133028		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Sco1 (MGI:106362)
chr17	10800000	16100000	17p12		605572	AOMS2	Abdominal obesity-metabolic syndrome QTL2		65077		second QTL on 3q27	Abdominal obesity-metabolic syndrome, 605572 (2), Autosomal dominant	
chr17	10800000	33500000	17p12-q11.2		613392	DFNB85	Deafness, autosomal recessive 85	DFNB85	100359399		between rs230884 and rs12603885	Deafness, autosomal recessive 85, 613392 (2), Autosomal recessive	
chr17	10800000	42800000	17p12-q21.2		614928	ECTD6	Ectodermal dysplasia 6, hair/nail type		101101770		between D17S839 and D17S1299	Ectodermal dysplasia 6, hair/nail type, 614928 (2), Autosomal recessive	
chr17	10800000	22700000	17p12-p11.2		616652	YUHAL	Yuan-Harel-Lupski syndrome				contiguous gene duplication syndrome	Yuan-Harel-Lupski syndrome, 616652 (4), Autosomal dominant	
chr17	10822474	10838100	17p13.1	17p12	612068	PIRT	Phosphoinositide-interacting regulator of transient receptor potential channels	PIRT	644139	ENSG00000233670			Pirt (MGI:2443635)
chr17	11241422	11564062	17p12	17p12	617327	SHISA6	Shisa family, member 6	SHISA6	388336	ENSG00000188803			Shisa6 (MGI:2685725)
chr17	11598430	11970167	17p12	17p12	603330	DNAH9, DNAH17L, DNEL1	Dynein, axonemal, heavy chain 9	DNAH9	1770	ENSG00000007174			Dnah9 (MGI:1289279)
chr17	11957432	12021521	17p13-p12	17p12	194524	ZNF18, KOX11	Zinc finger protein-18 (KOX11)	ZNF18	7566	ENSG00000154957			Zkscan6 (MGI:1289293)
chr17	12020817	12143830	17p11.2	17p12	601335	SERK1, PRKMK4, MAPKK4, JNKK1	SAPK/ERK kinase-1	MAP2K4	6416	ENSG00000065559			Map2k4 (MGI:1346869)
chr17	12665889	12768948	17p11.2	17p12	606127	MYOCD	Myocardin	MYOCD	93649	ENSG00000141052			Myocd (MGI:2137495)
chr17	12789511	12991643	17p12	17p12	617716	ARHGAP44, RICH2, KIAA0672	RHO GTPase-activating protein 44	ARHGAP44	9912	ENSG00000006740			Arhgap44 (MGI:2144423)
chr17	12991611	13018063	17p11	17p12	605367	ELAC2, HPC2, COXPD17	elaC, E. coli, homolog 2	ELAC2	60528	ENSG00000006744	at ~365cR	Combined oxidative phosphorylation deficiency 17, 615440 (3), Autosomal recessive; {Prostate cancer, hereditary, 2, susceptibility to}, 614731 (3)	Elac2 (MGI:1890496)
chr17	13494031	13601941	17p12-p11.2	17p12	604057	HS3ST3A1, 30ST3A1	Heparan sulfate D-glucosaminyl 3-0-sulfotransferase 3A1	HS3ST3A1	9955	ENSG00000153976			Hs3st3a1 (MGI:1333861)
chr17	14069401	14208678	17p12-p11.2	17p12	602125	COX10	Cytochrome c oxidase, subunit X	COX10	1352	ENSG00000006695		Leigh syndrome due to mitochondrial COX4 deficiency, 256000 (3), Autosomal recessive, Mitochondrial; Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Cox10 (MGI:1917633)
chr17	14301049	14349405	17p12-p11.2	17p12	604058	HS3ST3B1, 30ST3B1	Heparan sulfate D-glucosaminyl 3-0-sulfotransferase 3B1	HS3ST3B1	9953	ENSG00000125430			Hs3st3b1 (MGI:1333853)
chr17	15229776	15265372	17p11.2	17p12	601097	PMP22, CMT1A, CMT1E, DSS, CIDP	Peripheral myelin protein-22	PMP22	5376	ENSG00000109099	mutation identified in 1 CIDP family	Charcot-Marie-Tooth disease, type 1A, 118220 (3), Autosomal dominant; Charcot-Marie-Tooth disease, type 1E, 118300 (3), Autosomal dominant; Dejerine-Sottas disease, 145900 (3), Autosomal recessive, Autosomal dominant; ?Neuropathy, inflammatory demyelinating, 139393 (3), ?Autosomal dominant; Neuropathy, recurrent, with pressure palsies, 162500 (3), Autosomal dominant; Roussy-Levy syndrome, 180800 (3), Autosomal dominant	Pmp22 (MGI:97631)
chr17	15303810	15343681	17p12	17p12	612683	TEKT3	Tektin 3	TEKT3	64518	ENSG00000125409			Tekt3 (MGI:1918312)
chr17	15627965	15684310	17p11.2	17p12	609505	TRIM16, EBBP	Tripartite motif-containing protein 16	TRIM16	10626	ENSG00000221926			Trim16 (MGI:2137356)
chr17	15675475	15675642	17p13-p12	17p12	194535	ZNF29	Zinc finger protein-29 (KOX26)	ZNF29P	7577		proximal to TP53		
chr17	15927781	15975895	17p12-p11.2	17p12	600446	ADORA2B	Adenosine A2b receptor	ADORA2B	136	ENSG00000170425	incorrectly put on 10		Adora2b (MGI:99403)
chr17	15976559	15999691	17p12	17p12	614535	ZSWIM7, SWS1	Zinc finger SWIM domain-containing protein 7	ZSWIM7	125150	ENSG00000214941			Zswim7 (MGI:1916997)
chr17	15999379	16045427	17p12	17p12	613814	TTC19, MC3DN2	Tetratricopeptide repeat domain 19	TTC19	54902	ENSG00000011295		Mitochondrial complex III deficiency, nuclear type 2, 615157 (3), Autosomal recessive	Ttc19 (MGI:1920045)
chr17	16030093	16216474	11p11.2	17p12-p11	600849	NCOR1	Nuclear receptor corepressor 1	NCOR1	9611	ENSG00000141027			Ncor1 (MGI:1349717)
chr17	16100000	25100000	17p11		608904	ADHD2	Attention deficit-hyperactivity disorder, susceptibility to, 2		450088			{Attention deficit-hyperactivity disorder}, 143465 (2), Autosomal dominant	
chr17	16100000	22700000	17p11.2		607354	IS2, AIS2	Scoliosis, idiopathic 2		282552		between D17S947 and D17S798	Scoliosis, idiopathic 2, 607354 (2)	
chr17	16100000	22700000	17p11.2		610883	PTLS	Potocki-Lupski syndrome				contiguous gene syndrome	Potocki-Lupski syndrome, 610883 (4), Isolated cases	
chr17	16100000	22700000	17p11.2-p11.2		604547	VWSM	Van der Woude syndrome modifier		100917				
chr17	16217194	16351799	17p12-p11.2	17p11.2	605947	PIGL, CHIME	Phosphatidylinositol glycan, class L	PIGL	9487	ENSG00000108474		CHIME syndrome, 280000 (3), Autosomal recessive	Pigl (MGI:2681271)
chr17	16342533	16353497	17p11.2	17p11.2	608139	CENPV, P30	Centromere protein V	CENPV	201161	ENSG00000166582			Cenpv (MGI:1920389)
chr17	16380792	16382744	17p12-p11.1	17p11.2	191339	UBB	Ubiquitin B	UBB	7314	ENSG00000170315		Cleft palate, isolated, 119540 (2), Autosomal dominant	
chr17	16415541	16437002	Chr.17	17p11.2	606676	TRPV2, VRL1	Transient receptor potential cation channel, subfamily V, member 2	TRPV2	51393	ENSG00000187688			Trpv2 (MGI:1341836)
chr17	16939083	16972087	17p11.2	17p11.2	604907	TNFRSF13B, TACI, CVID2	Tumor necrosis factor receptor superfamily, member 13B	TNFRSF13B	23495	ENSG00000240505		Immunodeficiency, common variable, 2, 240500 (3), Autosomal recessive, Autosomal dominant; Immunoglobulin A deficiency 2, 609529 (3)	Tnfrsf13b (MGI:1889411)
chr17	17042437	17192647	17p11.2	17p11.2	612935	MPRIP, MRIP, KIAA0864, RIP3, P116RIP	Myosin phosphatase Rho-interacting protein	MPRIP	23164	ENSG00000133030			Mprip (MGI:1349438)
chr17	17200989	17206904	17p11.2	17p11.2	614960	PLD6, ZUC	Phospholipase D family, member 6	PLD6	201164	ENSG00000179598			
chr17	17206945	17237190	17p11.2	17p11.2	607273	FLCN, BHD	Folliculin	FLCN	201163	ENSG00000154803		Birt-Hogg-Dube syndrome, 135150 (3), Autosomal dominant; Colorectal cancer, somatic, 114500 (3); Pneumothorax, primary spontaneous, 173600 (3), Autosomal dominant; Renal carcinoma, chromophobe, somatic, 144700 (3)	Flcn (MGI:2442184)
chr17	17246623	17281302	17p11.2	17p11.2	604665	COPS3, SGN3	COP9 signalosome, subunit 3	COPS3	8533	ENSG00000141030			Cops3 (MGI:1349409)
chr17	17303365	17347662	17p11.2	17p11.2	605292	NT5M, DNT2	Deoxyribonucleotidase, mitochondrial (5' nucleotidase, mitochondrial)	NT5M	56953	ENSG00000205309			Nt5m (MGI:1917127)
chr17	17476985	17493219	17p11.2	17p11.2	609878	MED9, MED25, FLJ10193	Mediator of RNA polymerase II transcription, subunit 9, S. cerevisiae, homolog of	MED9	55090	ENSG00000141026			Med9 (MGI:2183151)
chr17	17494436	17496394	17p11.2	17p11.2	605550	RASD1, DEXRAS1	Ras protein, dexamethasone-induced, 1	RASD1	51655	ENSG00000108551			Rasd1 (MGI:1270848)
chr17	17505560	17591986	17p11.2	17p11.2	602391	PEMT, PEMPT	Phosphatidylethanolamine N-methyltransferase	PEMT	10400	ENSG00000133027			Pemt (MGI:104535)
chr17	17681375	17811452	17p11.2	17p11.2	607642	RAI1, SMCR, SMS	Retinoic acid-induced gene 1	RAI1	10743	ENSG00000108557		Smith-Magenis syndrome, 182290 (3), Autosomal dominant, Isolated cases	Rai1 (MGI:103291)
chr17	17811348	17837016	17p11.2	17p11.2	184756	SREBF1	Sterol regulatory element binding transcription factor 1	SREBF1	6720	ENSG00000072310			Srebf1 (MGI:107606)
chr17	17813835	17813930	17p11.2	17p11.2	613486	MIR33B, MIRN33B	Micro RNA 33B	MIR33B	693120				
chr17	17843507	17972469	17p11.2	17p11.2	615519	TOM1L2	TOM1-like 2	TOM1L2	146691	ENSG00000175662			Tom1l2 (MGI:2443306)
chr17	18015058	18039167	17p11.2	17p11.2	608918	ATPAF2, ATP12, MC5DN1	ATP synthase, mitochondrial F1 complex, assembly factor 2	ATPAF2	91647	ENSG00000171953	mutation identified in 1 MC5DN1 patient	?Mitochondrial complex V (ATP synthase) deficiency, nuclear type 1, 604273 (3), Autosomal recessive	Atpaf2 (MGI:2180561)
chr17	18039296	18068404	17p11.2	17p11.2	617699	GID4, VID2, C17orf39	GID complex, subunit 4	GID4	79018	ENSG00000141034			Gid4 (MGI:1914021)
chr17	18087866	18107984	17p11.2	17p11.2	602986	DRG2	Developmentally regulated GTP-binding protein 2	DRG2	1819	ENSG00000108591			Drg2 (MGI:1342307)
chr17	18108705	18180243	17p11.2	17p11.2	602666	MYO15A, DFNB3	Myosin XVA	MYO15A	51168	ENSG00000091536		Deafness, autosomal recessive 3, 600316 (3), Autosomal recessive	Myo15 (MGI:1261811)
chr17	18183552	18209953	17p11.2	17p11.2	613303	ALKBH5, ABH5	AlkB, E. coli, homolog of, 5	ALKBH5	54890	ENSG00000091542			Alkbh5 (MGI:2144489)
chr17	18225592	18244874	17p12-p11.2	17p11.2	600966	LLGL1, DLG4	Lethal giant larvae, Drosophila, homolog of, 1	LLGL1	3996	ENSG00000131899			Llgl1 (MGI:102682)
chr17	18244814	18258915	17p11.2	17p11.2	600362	FLII	Flightless-I, Drosophila, homolog of	FLII	2314	ENSG00000177731			Flii (MGI:1342286)
chr17	18260533	18265789	17p11.2	17p11.2	615498	MEIF2, SMCR7, MID49	Mitochondrial elongation factor 2	MIEF2	125170	ENSG00000177427			Mief2 (MGI:2144199)
chr17	18269957	18315091	17p12-p11.2	17p11.2	601243	TOP3A	Topoisomerase (DNA) III, alpha	TOP3A	7156	ENSG00000177302			Top3a (MGI:1197527)
chr17	18315279	18328055	17p11.2	17p11.2	617074	SMCR8	Smith-Magenis syndrome chromosome region, candidate gene 8	SMCR8	140775	ENSG00000176994			Smcr8 (MGI:2444720)
chr17	18327859	18363562	17p11.2	17p11.2	182144	SHMT1	Serine hydroxymethyltransferase (soluble)	SHMT1	6470	ENSG00000176974	?role in Smith-Magenis syndrome		Shmt1 (MGI:98299)
chr17	18497089	18503284	17p13.1-q25	17p11.2	600719	NOS2B	Nitric oxide synthase 2B	NOS2P2	201288				
chr17	18744012	18779348	17p12	17p11.2	611679	FBXW10	F-box and WD40 domain protein 10	FBXW10	10517	ENSG00000171931			Fbxw10 (MGI:3052463)
chr17	18856298	18931286	17p12-p11.2	17p11.2	603762	PRPSAP2, PAP41	Phosphoribosylpyrophosphate synthetase-associated protein 2	PRPSAP2	5636	ENSG00000141127			Prpsap2 (MGI:2384838)
chr17	19188015	19188231	17p11.2	17p11.2	180710	RNU3	RNA, U3 small nuclear	SNORD3A	780851		deleted in Smith-Magenis syndrome		
chr17	19335371	19378192	17p11.2	17p11.2	614144	B9D1, MKSR1, MKS9, JBTS27	B9 domain-containing protein 1	B9D1	27077	ENSG00000108641	mutation identified in 1 MKS9 patient	Joubert syndrome 27, 617120 (3), Autosomal recessive; ?Meckel syndrome 9, 614209 (3), Autosomal recessive	B9d1 (MGI:1351471)
chr17	19237376	19336714	Chr.17	17p11.2	607263	EPN2, KIAA1065	Epsin 2	EPN2	22905	ENSG00000072134			Epn2 (MGI:1333766)
chr17	19377720	19383543	17p11.2	17p11.2	602521	MAPK7, PRKM7, ERK5	Mitogen-activated protein kinase 7 (extracellular signal-regulated kinase 5)	MAPK7	5598	ENSG00000166484			Mapk7 (MGI:1346347)
chr17	19383441	19387218	17p11.2	17p11.2	600596	MFAP4	Microfibrillar-associated protein-4	MFAP4	4239	ENSG00000166482			Mfap4 (MGI:1342276)
chr17	19406978	19417275	17p11.2	17p11.2	601237	RNF112, ZNF179, BFP	RING finger protein 112	RNF112	7732	ENSG00000128482			Rnf112 (MGI:106611)
chr17	19533853	19579032	17p11.2	17p11.2	609832	SLC47A1, MATE1, FLJ10847	Solute carrier family 47, member 1	SLC47A1	55244	ENSG00000142494			Slc47a1 (MGI:1914723)
chr17	19648145	19677595	17p11.2	17p11.2	609523	ALDH3A2, ALDH10, SLS, FALDH	Aldehyde dehydrogenase 3 family, member A2 (fatty aldehyde dehydrogenase)	ALDH3A2	224	ENSG00000072210		Sjogren-Larsson syndrome, 270200 (3), Autosomal recessive	Aldh3a2 (MGI:1353452)
chr17	19678312	19719597	17p11.2	17p11.2	609833	SLC47A2, MATE2, FLJ31196, MATE2K	Solute carrier family 47, member 2	SLC47A2	146802	ENSG00000180638			
chr17	19737983	19748432	17p11.2	17p11.2	100660	ALDH3A1, ALDH3	Aldehyde dehydrogenase 3 family, member A1	ALDH3A1	218	ENSG00000108602			Aldh3a1 (MGI:1353451)
chr17	19770827	19867925	17p11.2	17p11.2	608650	ULK2, KIAA0623, UNC51.2	UNC51-like kinase 2	ULK2	9706	ENSG00000083290			Ulk2 (MGI:1352758)
chr17	19904301	19977855	17p11.1	17p11.2	604694	AKAP10	A-kinase anchor protein 10	AKAP10	11216	ENSG00000108599		{Cardiac conduction defect, susceptibility to}, 115080 (3), Autosomal dominant	Akap10 (MGI:1890218)
chr17	20009300	20319025	17p11.2	17p11.2	608793	SPECC1, HCMOGT1, NSP	Sperm antigen with calponin homology and coiled-coil domains 1	SPECC1	92521	ENSG00000128487			Specc1 (MGI:2442356)
chr17	20999592	21043408	17p11.2	17p11.2	612116	USP22, KIAA1064	Ubiquitin-specific protease 22	USP22	23326	ENSG00000124422			Usp22 (MGI:2144157)
chr17	21123367	21192029	17p11.2	17p11.2	616160	DHRS7B, SDR32C1	Short-chain dehydrogenase reductase family, member 7B	DHRS7B	25979	ENSG00000109016			Dhrs7b (MGI:2384931)
chr17	21284655	21315239	17q11.2	17p11.2	602315	PRKMK3, MAPKK3, MEK3	Protein kinase, mitogen-activated, kinase-3	MAP2K3	5606	ENSG00000034152			Map2k3 (MGI:1346868)
chr17	21376386	21419869	17p11.2-p11.1	17p11.2	602323	KCNJ12, KCNJN1	Potassium inwardly-rectifying channel, subfamily J, member 12	KCNJ12	3768	ENSG00000184185			Kcnj12 (MGI:108495)
chr17	21692522	21705699	17p11.2	17p11.2	613236	KCNJ18, KIR2.6, TTPP2	Potassium channel, inwardly rectifying, subfamily J, member 18	KCNJ18	100134444	ENSG00000260458		{Thyrotoxic periodic paralysis, susceptibility to, 2}, 613239 (3), Isolated cases	
chr17	22406018	22413740	17p11.2	17p11.2	605160	PRG4, FLJ36000	p53-responsive gene 4		284124				
chr17	22523110	22524664	17p11.2	17p11.2	616985	MTRNR2L1, HN1	MTRNR2-like 1	MTRNR2L1	100462977	ENSG00000256618			
chr17	25100000	33500000	17q11		609378	AUTS6	Autism, susceptibility to, 6		554314		max lod at D17S1800	{Autism susceptibility 6}, 609378 (2)	
chr17	25100000	33500000	17q11		606601	ERVE1, HERVE1	Endogenous retroviral sequence E, 1	ERVE-1	85314				
chr17	25100000	83257441	17q		603918	HYT1	Hypertension, essential, susceptibility to, 1		117191		~18cM distal to ACE	{Hypertension, essential, susceptibility to, 1}, 145500 (2), Multifactorial	
chr17	27294020	27313630	17q11.1	17q11.1	610091	WSB1, SWIP1	WD repeat- and SOCS box-containing protein 1	WSB1	26118	ENSG00000109046			Wsb1 (MGI:1926139)
chr17	27400000	33500000	17q11.2		601395	CCL3L1, SCYA3L1, LD78	Chemokine, C-C motif, ligand 3-like 1	CCL3L1	6349	ENSG00000276085	varies in copy number 1-10	{HIV/AIDS, susceptibility to}, 609423 (3)	
chr17	27400000	33500000	17q11.2		613675	DEL17q11.2, C17DELq11.2	Chromosome 17q11.2 deletion syndrome, 1.4Mb (NF1 microdeletion syndrome)					Chromosome 17q11.2 deletion syndrome, 1.4Mb, 613675 (4), Autosomal dominant	
chr17	27400000	72900000	17q11.2-q24		154275	MHS2	Malignant hyperthermia susceptibility 2	MHS2	4264		?due to mutation in SCN4A	{Malignant hyperthermia susceptibility 2}, 154275 (2), Autosomal dominant	
chr17	27400000	33500000	17q11.2		612575	MPVQTL3	Mean platelet volume quantitative trait locus 3		100271869		associated with rs2138852	[Mean platelet volume QTL3], 612575 (2)	
chr17	27456440	27626437	17q11.2	17q11.2	601132	KSR, KSR1	Kinase suppressor of RAS	KSR1	8844	ENSG00000141068			Ksr1 (MGI:105051)
chr17	27631147	27649559	17q11.2	17q11.2	601879	LGALS9	Lectin, galactoside-binding, soluble, 9	LGALS9	3965	ENSG00000168961			
chr17	27651442	27664654	17p13.1-q25	17q11.2	600720	NOS2C	Nitric oxide synthase 2C	NOS2P1	645740				
chr17	27756765	27800528	17cen-q11.2	17q11.2	163730	NOS2A, NOS2	Nitric oxide synthase 2A, inducible, hepatocytes	NOS2	4843	ENSG00000007171	?cluster of 3 NOS2 genes	{Hypertension, susceptibility to}, 145500 (2), Multifactorial; {Malaria, resistance to}, 611162 (3)	Nos2 (MGI:97361)
chr17	28226562	28228059	17q11	17q11.2	606637	PYY2	Peptide YY, 2	PYY2	23615				
chr17	28247443	28248288	17q11	17q11.2	606638	PPY2	Pancreatic polypeptide 2	PPY2P	23614				
chr17	28319040	28328684	17q11.2	17q11.2	612912	TMEM97, MAC30	Transmembrane protein 97	TMEM97	27346	ENSG00000109084			Tmem97 (MGI:1916321)
chr17	28328324	28335488	17p11.1	17q11.2	614394	IFT20	Intraflagellar transport 20, chlamydomonas, homolog of	IFT20	90410	ENSG00000109083			Ift20 (MGI:1915585)
chr17	28335521	28347008	17q22-q23	17q11.2	191161	TNFAIP1	Tumor necrosis factor, alpha-induced protein-1 (endothelial)	TNFAIP1	7126	ENSG00000109079			Tnfaip1 (MGI:104961)
chr17	28346627	28357588	17q11.2	17q11.2	611519	POLDIP2, PDIP38	Polymerase delta-interacting protein 2	POLDIP2	26073	ENSG00000004142			Poldip2 (MGI:1915061)
chr17	28357580	28363682	17q11.2	17q11.2	616815	TMEM199, VMA12, VPH2, C17orf32, CDG2P	Transmembrane protein 199	TMEM199	147007	ENSG00000244045		Congenital disorder of glycosylation, type IIp, 616829 (3), Autosomal recessive	Tmem199 (MGI:2144113)
chr17	28364267	28365150	17q11.2	17q11.2	610975	SEBOX, OG9	Skin-, embryo-, brain-, and oocyte-specific homeobox	SEBOX	645832	ENSG00000274529			Sebox (MGI:108012)
chr17	28367276	28370351	17q11	17q11.2	193190	VTN, VNT	Vitronectin (serum spreading factor, somatomedin B, complement S-protein)	VTN	7448	ENSG00000109072			Vtn (MGI:98940)
chr17	28371661	28401044	17q11	17q11.2	607732	SARM, KIAA0524	Sterile alpha and heat/armadillo motifs-containing protein	SARM1	23098	ENSG00000004139			Sarm1 (MGI:2136419)
chr17	28394641	28406629	17q11.1	17q11.2	611672	SLC46A1, HCP1, PCFT	Solute carrier family 46 (folate transporter), member 1	SLC46A1	113235	ENSG00000076351		Folate malabsorption, hereditary, 229050 (3), Autosomal recessive	Slc46a1 (MGI:1098733)
chr17	28473356	28497780	17p11.1-q11.1	17q11.2	604148	SLC13A2, NADC1	Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2	SLC13A2	9058	ENSG00000007216			Slc13a2 (MGI:1276558)
chr17	28506210	28538899	17q11-q12	17q11.2	600838	FOXN1, WHN	Forkhead box N1 (winged helix nude)	FOXN1	8456	ENSG00000109101		T-cell immunodeficiency, congenital alopecia, and nail dystrophy, 601705 (3), Autosomal recessive	Foxn1 (MGI:102949)
chr17	28546706	28552662	17q11.2	17q11.2	604011	UNC119, HRG4, IMD13	Unc119, C. elegans, homolog of (human retinal gene 4)	UNC119	9094	ENSG00000109103	mutation identified in 1 IMD13 family and CORD family	?Cone-rod dystrophy (3); ?Immunodeficiency 13, 615518 (3), Autosomal dominant	Unc119 (MGI:1328357)
chr17	28553387	28571868	17q11.2	17q11.2	610271	PIGS	Phosphatidylinositol glycan, class S	PIGS	94005	ENSG00000087111			Pigs (MGI:2687325)
chr17	28573114	28576962	17cen-q12	17q11.2	103870	ALDOC	Aldolase C, fructose-bisphosphatase	ALDOC	230	ENSG00000109107			Aldoc (MGI:101863)
chr17	28577564	28599037	17q11.2	17q11.2	615562	SPAG5, MAP126, ASTRIN	Sperm-associated antigen 5	SPAG5	10615	ENSG00000076382			Spag5 (MGI:1927470)
chr17	28648355	28662188	17q11.2	17q11.2	602934	SDF2	Stromal cell-derived factor-2	SDF2	6388	ENSG00000132581			Sdf2 (MGI:108019)
chr17	28662182	28702683	17q11.2	17q11.2	601333	SUPT6H	Suppressor of Ty, S.cerevisiae, 6 homolog of	SUPT6H	6830	ENSG00000109111			Supt6 (MGI:107726)
chr17	28703196	28712064	17q11.2	17q11.2	617376	PROCA1	Proline-rich cyclin A1-interacting protein	PROCA1	147011	ENSG00000167525			Proca1 (MGI:1918274)
chr17	28714280	28718439	17q11.1	17q11.2	610917	RAB34, RAH	Ras-associated protein 34	RAB34	83871	ENSG00000109113			Rab34 (MGI:104606)
chr17	28719981	28724355	17q11	17q11.2	602326	RPL23A	Ribosomal protein L23a	RPL23A	6147	ENSG00000198242			
chr17	28727898	28742765	17q11.1	17q11.2	609799	NEK8, JCK, NPHP9, RHPD2	Never in mitosis gene A-related kinase 8	NEK8	284086	ENSG00000160602	mutations identified in 1 family with NPHP9	?Nephronophthisis 9, 613824 (3); Renal-hepatic-pancreatic dysplasia 2, 615415 (3), Autosomal recessive	Nek8 (MGI:1890646)
chr17	28744003	28750957	17q11.2	17q11.2	602464	TRAF4, MLN62, CART1	TNF receptor-associated factor 4	TRAF4	9618	ENSG00000076604			Traf4 (MGI:1202880)
chr17	28854956	28861066	17q11.2	17q11.2	607435	ERAL1, ERAL1A, ERAL1B, PRLTS6	ERA G-protein-like 1	ERAL1	26284	ENSG00000132591		Perrault syndrome 6, 617565 (3), Autosomal recessive	Eral1 (MGI:1889295)
chr17	28861368	28861439	17q11.2	17q11.2	612071	MIR451, MIRN451	Micro RNA 451	MIR451A	574411				
chr17	28861532	28861617	17q11.2	17q11.2	612070	MIR144, MIRN144	Micro RNA 144	MIR144	406936				
chr17	28879334	28897735	17q11-q12	17q11.2	131560	FLOT2, M17S1, ECS1, ESA1	Flotillin 2 (epidermal surface antigen 1)	FLOT2	2319	ENSG00000132589	~180kb centromeric to NF1		Flot2 (MGI:103309)
chr17	28897780	28903070	17q11.2	17q11.2	616157	DHRS13, SDR7C5	Short-chain dehydrogenase reductase family, member 13	DHRS13	147015	ENSG00000167536			Dhrs13 (MGI:1917701)
chr17	28954904	29006439	17q11.2	17q11.2	616666	SEZ6, BSRPC	Seizure-related 6, mouse, homolog of	SEZ6	124925	ENSG00000063015			Sez6 (MGI:104745)
chr17	29073509	29180388	17q11.2	17q11.2	610067	MYO18A, SPR210	Myosin XVIIIA	MYO18A	399687	ENSG00000196535			Myo18a (MGI:2667185)
chr17	29073520	29075608	17q11.2	17q11.2	609517	TIAF1, MYO18A, MYSPDZ, MAJN, SPR210, KIAA0216	TGFB1-induced antiapoptotic factor 1	TIAF1	9220	ENSG00000221995			
chr17	29246856	29254493	17q11.1-q12	17q11.2	123610	CRYBA1, CRYB1, CTRCT10	Crystallin, beta A1	CRYBA1	1411	ENSG00000108255	centromeric to NF1	Cataract 10, multiple types, 600881 (3), Autosomal dominant	Cryba1 (MGI:88518)
chr17	29255835	29294147	17q11.2	17q11.2	609356	NUFIP2, KIAA1321, PIG1	Nuclear fragile X mental retardation protein-interacting protein 2	NUFIP2	57532	ENSG00000108256			Nufip2 (MGI:1915814)
chr17	29390924	29551903	17q11.2	17q11.2	610266	TAOK1, PSK2, TAO1, MARKK	TAO kinase 1	TAOK1	57551	ENSG00000160551			Taok1 (MGI:1914490)
chr17	29573468	29589591	17p11.2	17q11.2	608434	GIT1	G protein-coupled receptor kinase-interacting protein 1	GIT1	28964	ENSG00000108262			Git1 (MGI:1927140)
chr17	29589768	29615005	17q11.2	17q11.2	615124	ANKRD13B	Ankyrin repeat domain-containing protein 13B	ANKRD13B	124930	ENSG00000198720			Ankrd13b (MGI:2144501)
chr17	29625937	29930238	17q11.2	17q11.2	606779	SSH2, KIAA1725	Slingshot, Drosophila, homolog of, 2	SSH2	85464	ENSG00000141298			Ssh2 (MGI:2679255)
chr17	30116806	30186474	17q11.2	17q11.2	616173	NSRP1, NSRP70, CCDC55	Nuclear speckle splicing regulatory protein 1	NSRP1	84081	ENSG00000126653			Nsrp1 (MGI:2144305)
chr17	30194318	30235967	17q11.1-q12	17q11.2	182138	SLC6A4, HTT, OCD1	Solute carrier family 6 (neurotransmitter transporter, serotonin), member 4	SLC6A4	6532	ENSG00000108576		{Anxiety-related personality traits}, 607834 (3); {Obsessive-compulsive disorder}, 164230 (3), Autosomal dominant	Slc6a4 (MGI:96285)
chr17	30248194	30292165	17q11.2	17q11.2	602403	BLMH, BMH	Bleomycin hydrolase	BLMH	642	ENSG00000108578			Blmh (MGI:1345186)
chr17	30378923	30469656	17p11.1-q11.1	17q11.2	603102	CPD	Carboxypeptidase D	CPD	1362	ENSG00000108582			Cpd (MGI:107265)
chr17	30477401	30526813	17q11	17q11.2	604026	GOSR1, GOS28, GS28	Golgi snap receptor complex member 1	GOSR1	9527	ENSG00000108587			Gosr1 (MGI:1858260)
chr17	30782683	30824759	17q11.2	17q11.2	614853	CRLF3, CYTOR4, CRLM9, CREME9	Cytokine receptor-like factor 3	CRLF3	51379	ENSG00000176390			Crlf3 (MGI:1860086)
chr17	30830829	30895868	17q11.2	17q11.2	609534	ATAD5, C17orf41, FRAG1, FLJ12735	ATPase family, AAA domain containing 5	ATAD5	79915	ENSG00000176208			Atad5 (MGI:2442925)
chr17	30898982	30907628	17q11.2	17q11.2	616422	TEFM, C17orf42	Transcription elongation factor, mitochondrial	TEFM	79736	ENSG00000172171			Tefm (MGI:1915800)
chr17	30921735	30959397	17q11.2	17q11.2	608635	ADAP2, CENTA2	ArfGAP with dual PH domains 2	ADAP2	55803	ENSG00000184060			Adap2 (MGI:2663075)
chr17	30968641	30999910	17q11	17q11.2	611358	RNF135, MMFD	Ring finger protein 135	RNF135	84282	ENSG00000181481		Macrocephaly, macrosomia, facial dysmorphism syndrome, 614192 (3)	Rnf135 (MGI:1919206)
chr17	31094926	31377676	17q11.2	17q11.2	613113	NF1, VRNF, WSS, NFNS	Neurofibromin (neurofibromatosis, type I)	NF1	4763	ENSG00000196712		Leukemia, juvenile myelomonocytic, 607785 (3), Autosomal dominant, Somatic mutation; Neurofibromatosis, familial spinal, 162210 (3), Autosomal dominant; Neurofibromatosis, type 1, 162200 (3), Autosomal dominant; Neurofibromatosis-Noonan syndrome, 601321 (3), Autosomal dominant; Watson syndrome, 193520 (3), Autosomal dominant	Nf1 (MGI:97306)
chr17	31294649	31297361	17q11.2	17q11.2	164345	OMG, OMGP	Oligodendrocyte-myelin glycoprotein	OMG	4974	ENSG00000126861	within the NF1 gene		Omg (MGI:106586)
chr17	31303769	31314148	17q11.2	17q11.2	158381	EVI2B, EVDB	Ecotropic viral integration site 2B	EVI2B	2124	ENSG00000185862	within the NF1 gene		Evi2,Evi2b (MGI:5439444,MGI:1890682)
chr17	31316409	31321748	17q11.2	17q11.2	158380	EVI2A, EVI2, EVDA	Ecotropic viral integration site 2A	EVI2A	2123	ENSG00000126860	within the NF1 gene		Evi2a (MGI:95458)
chr17	31391623	31538216	17q11.2	17q11.2	611999	RAB11FIP4, KIAA1821	RAB11 family-interacting protein 4	RAB11FIP4	84440	ENSG00000131242			Rab11fip4 (MGI:2442920)
chr17	31559995	31560082	17q11.2	17q11.2	614733	MIR193A	Micro RNA 193A	MIR193A	406968				
chr17	31937009	32001044	17q11.2	17q11.2	606245	JJAZ1, KIAA0160	JJAZ1 gene	SUZ12	23512	ENSG00000178691			Suz12 (MGI:1261758)
chr17	32007871	32053499	17q11.2	17q11.2	616558	LRRC37B	Leucine-rich repeat-containing protein 37B	LRRC37B	114659	ENSG00000185158			
chr17	32142453	32253373	17q11.2	17q11.2	613888	RHOT1, MIRO1, ARHT1	Ras homolog gene family, member T1	RHOT1	55288	ENSG00000126858			Rhot1 (MGI:1926078)
chr17	32350137	32381884	17q11.2	17q11.2	603428	ZNF207	Zinc finger protein-207	ZNF207	7756	ENSG00000010244	mapped by FISH to 6p21.3		Zfp207 (MGI:1340045)
chr17	32444462	32483318	17q11.2	17q11.2	604449	PSMD11, S9	Proteasome 26S subunit, non-ATPase, 11	PSMD11	5717	ENSG00000108671			Psmd11 (MGI:1916327)
chr17	32485027	32491255	17q11.2	17q11.2	603460	CDK5R1, p35	Cyclin-dependent kinase 5, regulatory subunit 1	CDK5R1	8851	ENSG00000176749			Cdk5r1 (MGI:101764)
chr17	32492521	32877172	17q11-q12	17q11.2	606539	MYO1D, KIAA0727	Myosin ID	MYO1D	4642	ENSG00000176658			Myo1d (MGI:107728)
chr17	32927909	32941648	17q11.2	17q11.2	615949	TMEM98, NNO4	Transmembrane protein 98	TMEM98	26022	ENSG00000006042		Nanophthalmos 4, 615972 (3), Autosomal dominant	Tmem98 (MGI:1923457)
chr17	32991863	32997876	17q12	17q11.2	612749	SPACA3, LYZL3, SLLP1, LYC3, ALLP17	Sperm acrosome-associated 3	SPACA3	124912	ENSG00000141316			Spaca3 (MGI:1922872)
chr17	33013086	34156805	17q11.2-q12	17q11-q12	601784	ACCN1, BNC1, MDEG	Amiloride-sensitive cation channel 1, neuronal (degenerin)	ASIC2	40	ENSG00000108684			Asic2 (MGI:1100867)
chr17	33500000	39800000	17q12		603782	CCL4L, SCYA4L, LAG1	Chemokine, C-C motif, ligand 4-like	CCL4L1	388372	ENSG00000276070			
chr17	33500000	39800000	17q12		614527	DEL17q12, C17DELq12	Chromosome 17q12 deletion syndrome					Chromosome 17q12 deletion syndrome, 614527 (4), Autosomal dominant	
chr17	33500000	39800000	17q12		614526	DUP17q12, C17DUPq12	Chromosome 17q12 duplication syndrome					Chromosome 17q12 duplication syndrome, 614526 (4), Autosomal dominant	
chr17	33500000	39800000	17q12		611955	HPC11	Prostate cancer, hereditary, 11				associated with rs4430796 and rs7501939	{Prostate cancer, hereditary, 11}, 611955 (2)	
chr17	33500000	39800000	17q12		614221	PBC5	Biliary cirrhosis, primary, 5		100689212		associated with rs9303277	Biliary cirrhosis, primary, 5, 614221 (2)	
chr17	33500000	52100000	17q12-q21		601363	WT4	Wilms tumor-4		8151			Wilms tumor, type 4, 601363 (2), Autosomal dominant	
chr17	34255276	34257202	17q11.2-q12	17q12	158105	CCL2, SCYA2, MCP1, MCAF	Small inducible cytokine A2 (monocyte chemotactic protein, homologous to mouse Sig-je)	CCL2	6347	ENSG00000108691		{Coronary artery disease, modifier of} (3); {HIV-1, resistance to}, 609423 (3); {Mycobacterium tuberculosis, susceptibility to}, 607948 (3); {Spina bifida, susceptibility to}, 182940 (3), Autosomal dominant	Ccl12 (MGI:108224)
chr17	34270215	34272241	17q11.2-q12	17q12	158106	CCL7, SCYA7, MCP3	Chemokine, C-C motif, ligand 5	CCL7	6354	ENSG00000108688	close to ERBB2		
chr17	34285667	34288179	17q21.1-q21.2	17q12	601156	CCL11, SCYA11	Chemokine, C-C motif, ligand 11	CCL11	6356	ENSG00000172156		{Asthma, susceptibility to}, 600807 (3), Autosomal dominant; {HIV1, resistance to}, 609423 (3)	Ccl11 (MGI:103576)
chr17	34319046	34321401	17q11.2	17q12	602283	CCL8, SCYA8	Chemokine, C-C motif, ligand 8	CCL8	6355	ENSG00000108700			
chr17	34356451	34358609	17q11.2	17q12	601391	CCL13, SCYA13, NCC1	Chemokine, C-C motif, ligand 13	CCL13	6357	ENSG00000181374			Ccl2 (MGI:98259)
chr17	34360327	34363232	Chr.17	17q12	182281	CCL1, SCYA1	Chemokine, C-C motif, ligand 1	CCL1	6346	ENSG00000108702			Ccl1 (MGI:98258)
chr17	34580748	34639317	17q12	17q12	616178	TMEM132E	Transmembrane protein 132E	TMEM132E	124842	ENSG00000181291			Tmem132e (MGI:2685490)
chr17	34927858	34981221	17q12	17q12	610730	CCT6B, CCTZ2	Chaperonin containing T-complex polypeptide 1, subunit 6B	CCT6B	10693	ENSG00000132141			Cct6b (MGI:1329013)
chr17	34980497	35005827	17q11.2-q12	17q12	600940	LIG3	Ligase III, DNA, ATP-dependent	LIG3	3980	ENSG00000005156			Lig3 (MGI:109152)
chr17	35009111	35089328	17q12	17q12	609735	RFFL	Ring finger and FYVE-like domain containing 1 (rififylin)	RFFL	117584	ENSG00000092871			Rffl (MGI:1914588)
chr17	35099791	35119868	17q11	17q12	602954	RAD51D, RAD51L3, BROVCA4	RAD51, S. cerevisiae, homolog of, D	RAD51D	5892	ENSG00000185379		{Breast-ovarian cancer, familial, susceptibility to, 4}, 614291 (3)	Rad51d (MGI:1261809)
chr17	35147792	35189344	17q11	17q12	611220	UNC45B, SMUNC45, CTRCT43	UNC45, C. elegans, homolog of, B	UNC45B	146862	ENSG00000141161	mutation identified in 1 CTRCT43 family	?Cataract 43, 616279 (3), Autosomal dominant	Unc45b (MGI:2443377)
chr17	35243035	35273654	17q12	17q12	614952	SLFN5	Schlafen family, member 5	SLFN5	162394	ENSG00000166750			Slfn5 (MGI:1329004)
chr17	35350304	35373913	17q12	17q12	614953	SLFN11	Schlafen family, member 11	SLFN11	91607	ENSG00000172716			
chr17	35407170	35433309	17q12	17q12	614955	SLFN12	Schlafen family, member 12	SLFN12	55106	ENSG00000172123			
chr17	35435095	35522292	17q12	17q12	614957	SLFN13	Schlafen family, member 13	SLFN13	146857	ENSG00000154760			Slfn8,Slfn9 (MGI:2672859,MGI:2445121)
chr17	35474905	35537860	17q12	17q12	614956	SLFN12L	Schlafen family, member 12-like	SLFN12L	100506736	ENSG00000205045			Slfn3,Slfn4 (MGI:1329005,MGI:1329010)
chr17	35545731	35560840	17q12	17q12	614958	SLFN14, BDPLT20	Schlafen family, member 14	SLFN14	342618	ENSG00000236320		Bleeding disorder, platelet-type, 20, 616913 (3), Autosomal dominant	Slfn14 (MGI:2684866)
chr17	35574794	35578636	17q12	17q12	601758	PEX12, PBD3A	Peroxisome biogenesis factor 12	PEX12	5193	ENSG00000108733		Peroxisome biogenesis disorder 3A (Zellweger), 614859 (3), Autosomal recessive; Peroxisome biogenesis disorder 3B, 266510 (3), Autosomal recessive	Pex12 (MGI:2144177)
chr17	35587262	35726416	17q11.2-q12	17q12	601025	AP2B1, CLAPB1, ADTB2	Adaptor-related protein complex 2, beta 1 subunit	AP2B1	163	ENSG00000006125			
chr17	35731659	35743520	17q12	17q12	612128	RASL10B, RRP17	Ras-like, family 10, member B	RASL10B	91608	ENSG00000270885			Rasl10b (MGI:2685575)
chr17	35744510	35752877	17q12	17q12	611398	GAS2L2, GAR17	Growth arrest-specific 2-like 2	GAS2L2	246176	ENSG00000270765			Gas2l2 (MGI:3652048)
chr17	35756248	35795706	17q11.2	17q12	608417	MMP28	Matrix metalloproteinase 28	MMP28	79148	ENSG00000271447			Mmp28 (MGI:2153062)
chr17	35809454	35847241	17q11.1-q11.2	17q12	601574	TAF15, TAF2N, RBP56	TAF15 RNA polymerase II, TATA box-binding protein-associated factor, 68kD	TAF15	8148	ENSG00000270647	fusion gene with CSMF	Chondrosarcoma, extraskeletal myxoid, 612237 (1)	Taf15 (MGI:1917689)
chr17	35871490	35880372	17q11.2-q12	17q12	187011	CCL5, SCYA5, D17S136E, TCP228	Chemokine, C-C motif, ligand 5	CCL5	6352	ENSG00000271503		{HIV-1 disease, delayed progression of} (3); {HIV-1 disease, rapid progression of} (3)	Ccl5 (MGI:98262)
chr17	35918079	35931820	17q11.2	17q12	612896	RDM1	RAD52 motif-containing protein 1	RDM1	201299	ENSG00000278023			Rdm1 (MGI:1913849)
chr17	35934517	35943709	17q11.2	17q12	612751	LYZL6	Lysozyme-like 6	LYZL6	57151	ENSG00000275722			Lyzl6 (MGI:1916694)
chr17	35976492	35983619	17q11.2	17q12	601394	CCL16, SCYA16, NCC4	Chemokine, C-C motif, ligand 16	CCL16	6360	ENSG00000275152			
chr17	35983655	35986727	17q11.2	17q12	601392	CCL14, SCYA14, NCC2	Chemokine, C-C motif, ligand 14	CCL14	6358	ENSG00000276409			
chr17	35997581	36002037	17q11.2	17q12	601393	CCL15, SCYA15, NCC3, LKN1	Chemokine, C-C motif, ligand 15	CCL15	6359	ENSG00000275718			
chr17	36013055	36018178	17q12	17q12	602494	CCL23, SCYA23	Chemokine, C-C motif, ligand 23	CCL23	6368	ENSG00000274736			
chr17	36064271	36071480	17q11.2	17q12	603757	CCL18, SCYA18, PARC, AMAC1, DCCK1	Chemokine, C-C motif, ligand 18	CCL18	6362	ENSG00000275385	in 47kb, CCL18-CCL3-CCL4		
chr17	36088255	36090159	17q12	17q12	182283	CCL3, SCYA3, MIP1A	Chemokine, C-C motif, ligand 3	CCL3	6348	ENSG00000277632	in 47kb, CCL18-CCL3-CCL4	{HIV infection, resistance to}, 609423 (2)	
chr17	36103826	36105620	17q12	17q12	182284	CCL4, SCYA4, ACT2, MIP1B, AT744.1	Chemokine, C-C motif, ligand 4	CCL4	6351	ENSG00000275302			Ccl4 (MGI:98261)
chr17	36165680	36176623	17q12	17q12	610144	TBC1D3B, PRC17	TBC1 domain family, member 3B	TBC1D3B	414059	ENSG00000274808			
chr17	36211062	36212877	17q12	17q12	610757	CCL4L2	Chemokine, CC motif, ligand 4-like 2	CCL4L2	9560	ENSG00000276070			
chr17	36322241	36334758	17q12	17q12	610810	TBC1D3G	TBC1 domain family, member 3G	TBC1D3G	101060321	ENSG00000260287			
chr17	36377474	36388451	17q12	17q12	610811	TBC1D3H	TBC1 domain family, member 3H	TBC1D3H	729877	ENSG00000274226			
chr17	36428611	36439522	17q12	17q12	610809	TBC1D3F	TBC1 domain family, member 3F	TBC1D3F	84218	ENSG00000275954			
chr17	36486626	36499309	17q12	17q12	604500	ZNHIT3, TRIP3, PEHO	Zinc finger HIT domain-containing protein 3	ZNHIT3	9326	ENSG00000273611		PEHO syndrome, 260565 (3), Autosomal recessive	Znhit3 (MGI:3051596)
chr17	36495635	36535456	17q12	17q12	617379	MYO19, MYOHD1	Myosin XIX	MYO19	80179	ENSG00000278259			Myo19 (MGI:1913446)
chr17	36534761	36539302	17q12	17q12	610275	PIGW, HPMRS5	Phosphatidylinositol glycan, class W	PIGW	284098	ENSG00000277161		Glycosylphosphatidylinositol biosynthesis defect 11, 616025 (3), Autosomal recessive	Pigw (MGI:1917575)
chr17	36544887	36589847	17q12-q21.1	17q12	612275	GGNBP2, DIF3, LCRG1, LZK1	Gametogenetin-binding protein 2	GGNBP2	79893	ENSG00000278311			Ggnbp2 (MGI:2387356)
chr17	36591795	36600803	17q12	17q12	616159	DHRS11, SDR24C1	Short-chain dehydrogenase reductase family, member 11	DHRS11	79154	ENSG00000278535			Dhrs11 (MGI:2652816)
chr17	36937474	36944614	17q12	17q12	601999	LHX1, LIM1	LIM/homeodomain protein LHX1	LHX1	3975	ENSG00000273706	previously mapped to 11p13-p12 by FISH		Lhx1 (MGI:99783)
chr17	36948874	37056870	17q11.2-q12	17q12	608463	AATF, CHE1	Apoptosis-antagonizing transcription factor	AATF	26574	ENSG00000275700			Aatf (MGI:1929608)
chr17	37084991	37406821	17q21	17q12	200350	ACACA, ACAC, ACC1, ACACAD	Acetyl-Coenzyme A carboxylase, alpha	ACACA	31	ENSG00000278540	proximal to q21.33; others put at 17q12	Acetyl-CoA carboxylase deficiency, 613933 (1), Autosomal recessive	Acaca (MGI:108451)
chr17	37406876	37479724	17q12-q21	17q12	602276	TADA2L, TADA2A, ADA2A	Transcriptional adaptor 2A	TADA2A	6871	ENSG00000276234			Tada2a (MGI:2144471)
chr17	37488560	37513500	Chr.17	17q12	606618	DUSP14, MKP6	Dual-specificity phosphatase 14	DUSP14	11072	ENSG00000276023			Dusp14 (MGI:1927168)
chr17	37514796	37609495	Chr.17	17q12	607291	AP1GBP1, SYNG	Adaptor-related protein complex 1 gamma subunit-binding protein 1	SYNRG	11276	ENSG00000275066			Synrg (MGI:1354742)
chr17	37609738	37643463	17q21.1	17q12	612500	DDX52, ROK1, HUSSY19	DEAD box polypeptide 52	DDX52	11056	ENSG00000278053			Ddx52 (MGI:1925644)
chr17	37686430	37745077	17q12	17q12	189907	HNF1B, TCF2, HNF2, MODY5, FJHN, HPC11	HNF1 homeobox B (transcription factor 2)	HNF1B	6928	ENSG00000275410		Diabetes mellitus, noninsulin-dependent, 125853 (3), Autosomal dominant; {Renal cell carcinoma}, 144700 (3); Renal cysts and diabetes syndrome, 137920 (3), Autosomal dominant	Hnf1b (MGI:98505)
chr17	38004032	38014907	17q12	17q12	610807	TBC1D3D	TBC1 domain family, member 3D	TBC1D3D	101060389	ENSG00000274419			
chr17	38057692	38068633	17q12	17q12	610806	TBC1D3C	TBC1 domain family, member 3C	TBC1D3C	414060	ENSG00000274808			
chr17	38118407	38138867	17q12	17q12	610808	TBC1D3E	TBC1 domain family, member 3E	TBC1D3E	102723859	ENSG00000273513			
chr17	38181475	38192554	17q12	17q12	607741	TBC1D3, PRC17, TBC1D3A	TBC1D3 gene	TBC1D3	729873	ENSG00000274512			
chr17	38297022	38323217	17q21.31	17q12	611850	MRPL45	Mitochondrial ribosomal protein L45	MRPL45	84311	ENSG00000278845	pseudogenes on 2 and 17		Mrpl45 (MGI:1914286)
chr17	38325609	38343809	17q12	17q12	614515	GPR179, GPR158L, GPR158L1, CSNB1E	G protein-coupled receptor 179	GPR179	440435	ENSG00000277399		Night blindness, congenital stationary (complete), 1E, autosomal recessive, 614565 (3), Autosomal recessive	Gpr179 (MGI:2443409)
chr17	38419285	38512391	17q12	17q12	610590	ARHGAP23, KIAA1501	RHO GTPase-activating protein 23	ARHGAP23	57636	ENSG00000275832			Arhgap23 (MGI:3697726)
chr17	38530014	38607165	17q12	17q12	610786	SRCIN1, SNIP, KIAA1684	Src kinase signaling inhibitor 1	SRCIN1	80725	ENSG00000277363			Srcin1 (MGI:1933179)
chr17	38671702	38674933	17q12	17q12	617795	EPOP, C17orf96	Elongin BC- and polycomb repressive complex 2-associated protein	EPOP	100170841	ENSG00000273604			Epop (MGI:2143991)
chr17	38705619	38729802	17q21	17q12	600328	MLLT6, AF17	Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 6	MLLT6	4302	ENSG00000275023			Mllt6 (MGI:1935145)
chr17	38730256	38735604	17q12	17q12	611933	CISD3, MINER2	CDGSH iron sulfur domain protein 3	CISD3	284106	ENSG00000277972			Cisd3b,Cisd3 (MGI:5012452,MGI:101788)
chr17	38733896	38749816	17q12	17q12	600346	RNF110, ZNF144, MEL18	Ring finger protein 110 (zinc finger protein-144)	PCGF2	7703	ENSG00000277258	previously assigned to 12q22		Pcgf2 (MGI:99161)
chr17	38752712	38764230	17q12	17q12	602176	PSMB3	Proteasome subunit, beta type, 3	PSMB3	5691	ENSG00000277791	previously assigned to 2q35		Psmb3 (MGI:1347014)
chr17	38765690	38799904	17q12	17q12	603261	PIP4K2B, PIP5P4KB, PIP5K2B	Phosphatidylinositol 5-phosphate 4-kinase, type II, beta	PIP4K2B	8396	ENSG00000276293			Pip4k2b (MGI:1934234)
chr17	38850067	38853799	17q	17q12	603662	RPL23	Ribosomal protein L23	RPL23	9349	ENSG00000125691			Rpl23 (MGI:1929455)
chr17	38869858	38921769	17q21	17q12	602920	LASP1, MLN50	LIM and SH3 protein 1	LASP1	3927	ENSG00000002834	fused to MLL in AML		Lasp1 (MGI:109656)
chr17	38925167	38929383	17q12	17q12	617544	LINC00672	Long intergenic noncoding RNA 672	LINC00672	100505576				
chr17	38936277	38967475	17q12	17q12	609498	FBXO47	F-box only protein 47	FBXO47	494188	ENSG00000204952			Fbxo47 (MGI:1920223)
chr17	39063302	39151648	17q21.1	17q12	606826	PLXDC1, TEM7	Plexin domain containing 1	PLXDC1	57125	ENSG00000161381			Plxdc1 (MGI:1919574)
chr17	39173455	39197702	17q21-q22	17q12	114207	CACNB1, CACNLB1, CCHLB1	Calcium channel, voltage-dependent, beta 1 subunit	CACNB1	782	ENSG00000067191			Cacnb1 (MGI:102522)
chr17	39200282	39204729	17q11	17q12	180466	RPL19	Ribosomal protein L19	RPL19	6143	ENSG00000108298			Rpl19 (MGI:98020)
chr17	39252643	39402658	17q21.2	17q12	609086	FBXL20, FBL20, FBL2, SCR	F-box and leucine-rich repeat protein 20	FBXL20	84961	ENSG00000108306			Fbxl20 (MGI:1919444)
chr17	39404284	39451280	17q12	17q12	604311	MED1, PPARBP, PBP, TRAP220	Mediator complex subunit 1 (peroxisome proliferator-activated receptor-binding protein)	MED1	5469	ENSG00000125686			Med1 (MGI:1100846)
chr17	39461485	39567559	17q21	17q12	615514	CDK12, CRKRS, CRK7, KIAA0904	Cyclin-dependent kinase 12	CDK12	51755	ENSG00000167258			Cdk12 (MGI:1098802)
chr17	39603767	39607921	17q12	17q12	601725	NEUROD2	Neurogenic differentiation 2	NEUROD2	4761	ENSG00000171532			Neurod2 (MGI:107755)
chr17	39637079	39664200	17q11-q21	17q12	607048	STARD3, MLN64	Start domain-containing protein 3	STARD3	10948	ENSG00000131748			Stard3 (MGI:1929618)
chr17	39665345	39666553	17q12	17q12	604488	TCAP, LGMD2G, CMH25	Telethonin	TCAP	8557	ENSG00000173991		Cardiomyopathy, hypertrophic, 25, 607487 (3), Autosomal dominant; Muscular dystrophy, limb-girdle, type 2G, 601954 (3), Autosomal recessive	Tcap (MGI:1330233)
chr17	39667980	39670474	17q12	17q12	171190	PNMT, PENT	Phenylethanolamine N-methyltransferase	PNMT	5409	ENSG00000141744			Pnmt (MGI:97724)
chr17	39671121	39688069	17q12	17q12	611801	PGAP3, PERLD1, CAB2, MGC9753, HPMRS4	Post-GPI attachment to proteins 3	PGAP3	93210	ENSG00000161395		Hyperphosphatasia with mental retardation syndrome 4, 615716 (3), Autosomal recessive	Pgap3 (MGI:2444461)
chr17	39688083	39728661	17q21.1	17q12	164870	ERBB2, NGL, NEU, HER2	Avian erythroblastic leukemia viral (v-erb-b2) oncogene homolog 2 (neuro/glioblastoma derived oncogene homolog)	ERBB2	2064	ENSG00000141736		Adenocarcinoma of lung, somatic, 211980 (3); Gastric cancer, somatic, 613659 (3); Glioblastoma, somatic, 137800 (3); Ovarian cancer, somatic (3)	Erbb2 (MGI:95410)
chr17	39728499	39730562	17q12	17q12	611802	MIEN1, C17orf37, RDX12	Migration and invasion enhancer 1	MIEN1	84299	ENSG00000141741			Mien1 (MGI:1913678)
chr17	39737900	39747284	17q21-q22	17q12	601522	GRB7	Growth factor receptor-bound protein 7	GRB7	2886	ENSG00000141738			Grb7 (MGI:102683)
chr17	39757714	39864187	17q21	17q12-q21	606221	IKZF3, ZNFN1A3, AIOLOS	Ikaros family zinc finger 3	IKZF3	22806	ENSG00000161405			Ikzf3 (MGI:1342542)
chr17	39800000	52100000	17q21		611403	ASRT6	Asthma-related traits, susceptibility to, 6		100188840		strongly associated with rs7216389	{Asthma-related traits, susceptibility to, 6}, 611403 (2)	
chr17	39800000	52100000	17q21		610676	AUTS7	Autism, susceptibility to, 7		100188816		max lod at D17S2180	{Autism susceptibility 7}, 610676 (2)	
chr17	39800000	59500000	17q21-q22		610997	HPC9	Prostate cancer, hereditary, 9		100188826		max LOD at D17S1820	{Prostate cancer, hereditary, 9}, 610997 (2)	
chr17	39800000	59500000	17q21-q22		608474	MYP5	Myopia 5	MYP5	404682		between D17S787 and D17S1811	Myopia 5, 608474 (2), Autosomal dominant	
chr17	39800000	59500000	17q21-q22		168860	PTLAH, FPAH	Patella aplasia or hypoplasia	PTLAH	8830			Patella aplasia or hypoplasia, 168860 (2), Autosomal dominant	
chr17	39868163	39877895	17q12-q21	17q21.1	608499	ZPBP2, ZPBPL	Zona pellucida-binding protein 2	ZPBP2	124626	ENSG00000186075			Zpbp2 (MGI:1916626)
chr17	39904594	39918649	17q21	17q21.1	611221	GSDMB, GSDML	Gasdermin B	GSDMB	55876	ENSG00000073605			
chr17	39921040	39927803	17q21.1	17q21.1	610075	ORMDL3	ORM1-like protein 3	ORMDL3	94103	ENSG00000172057			Ormdl3 (MGI:1913862)
chr17	39962972	39977765	17q12	17q21.1	611218	GSDMA, GSDM1, GSDM	Gasdermin A	GSDMA	284110	ENSG00000167914			Gsdma (MGI:1889509)
chr17	39980767	39997959	17q21.1	17q21.1	617676	PSMD3, RPN3	Proteasome 26S subunit, non-ATPase, 3	PSMD3	5709	ENSG00000108344			Psmd3 (MGI:98858)
chr17	40015360	40017812	17q11.2-q12	17q21.1	138970	CSF3, GCSF	Colony-stimulating factor-3 (granulocyte)	CSF3	1440	ENSG00000108342			Csf3 (MGI:1339751)
chr17	40019096	40054741	17q21.1	17q21.1	607000	MED24, TRAP100, KIAA0130	Mediator complex subunit 24	MED24	9862	ENSG00000008838			Med24 (MGI:1344385)
chr17	40062192	40093866	17q11.2	17q21.1	190120	THRA, ERBA1, THRA1, CHNG6	Thyroid hormone receptor, alpha (oncogene ERBA1)	THRA	7067	ENSG00000126351		Hypothyroidism, congenital, nongoitrous, 6, 614450 (3), Autosomal dominant	Thra (MGI:98742)
chr17	40092783	40100724	17q11.2	17q21.1	602408	NR1D1, THRAL, EAR1	Nuclear receptor 1, subfamily D, member 1 (thyroid hormone receptor, alpha-1-like)	NR1D1	9572	ENSG00000126368			Nr1d1 (MGI:2444210)
chr17	40121408	40136789	17q21.1	17q21.1	614801	MSL1	Male-specific lethal 1, Drosophila, homolog of	MSL1	339287	ENSG00000188895			Msl1 (MGI:1921276)
chr17	40140253	40172177	17q12-q21.3	17q21.1	606504	MLN51, CASC3	MLN51 gene	CASC3	22794	ENSG00000108349			Casc3 (MGI:2179723)
chr17	40200000	42800000	17q21.2		612380	IBD22	Inflammatory bowel disease 22		100240732		associated with rs744166	{Inflammatory bowel disease 22}, 612380 (2)	
chr17	40219303	40284135	17q21.2	17q21.2	609692	WIRE, WICH	WASP-interacting protein-related protein	WIPF2	147179	ENSG00000171475			Wipf2 (MGI:1924462)
chr17	40287877	40303160	17q21.2	17q21.2	602627	CDC6, CDC18L, MGORS5	Cell division cycle 6, S. cerevisiae, homolog of	CDC6	990	ENSG00000094804	mutation identified in 1 MGORS5 patient	?Meier-Gorlin syndrome 5, 613805 (3), Autosomal recessive	Cdc6 (MGI:1345150)
chr17	40309170	40357642	17q21.1	17q21.2	180240	RARA	Retinoic acid receptor, alpha polypeptide	RARA	5914	ENSG00000131759	fused with MYL in APL	Leukemia, acute promyelocytic, 612376 (1)	Rara (MGI:97856)
chr17	40360651	40364692	17q21.1	17q21.2	607425	GJD3, GJC1, CX31.9	Gap junction protein, delta-3 (31.9kD)	GJD3	125111	ENSG00000183153			Gjd3 (MGI:2384150)
chr17	40388520	40417949	17q21-q22	17q21.2	126430	TOP2A, TOP2	Topoisomerase (DNA) II, alpha, 170kD	TOP2A	7153	ENSG00000131747		DNA topoisomerase II, resistance to inhibition of, by amsacrine (3)	Top2a (MGI:98790)
chr17	40443423	40457729	17q12-q21	17q21.2	146733	IGFBP4	Insulin-like growth factor-binding protein-4	IGFBP4	3487	ENSG00000141753			Igfbp4 (MGI:96439)
chr17	40475827	40501680	17q12-q21	17q21.2	608385	TNS4, CTEN	Tensin 4	TNS4	84951	ENSG00000131746			Tns4 (MGI:2144377)
chr17	40553768	40565483	17q12-q21.2	17q21.2	600242	CCR7, CMKBR7, EBI1	Chemokine (C-C) receptor 7 (Epstein-Barr virus induced gene 1)	CCR7	1236	ENSG00000126353			Ccr7 (MGI:103011)
chr17	40627719	40647850	17q21.2	17q21.2	603111	SMARCE1, BAF57, CSS5	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily E, member 1	SMARCE1	6605	ENSG00000073584		Coffin-Siris syndrome 5, 616938 (3), Autosomal dominant; {Meningioma, familial, susceptibility to}, 607174 (3), Autosomal dominant	Smarce1 (MGI:1927347)
chr17	40694245	40703749	17q11.2	17q21.2	607742	KRT24, FLJ20261	Keratin 24	KRT24	192666	ENSG00000167916			Krt24 (MGI:1922956)
chr17	40748020	40755541	17q21.2	17q21.2	616646	KRT25, K25, KRT24IRS1, ARWH3	Keratin 25, type I	KRT25	147183	ENSG00000204897		Woolly hair, autosomal recessive 3, 616760 (3), Autosomal recessive	Krt25 (MGI:1918060)
chr17	40766237	40772158	17q21.2	17q21.2	616675	KRT26, K25, K25B, K25IRS2	Keratin 26, type I	KRT26	353288	ENSG00000186393			Krt26 (MGI:2444913)
chr17	40776807	40782533	17q21.2	17q21.2	616676	KRT27, KRT25C, K25IRS3	Keratin 27, type I	KRT27	342574	ENSG00000171446			Krt27 (MGI:1339999)
chr17	40792195	40799958	17q21.2	17q21.2	616677	KRT28, K25D, K25IRS4	Keratin 28, type I	KRT28	162605	ENSG00000173908			Krt28 (MGI:1918093)
chr17	40818116	40822620	17q21-q22	17q21.2	148080	KRT10, EHK, BCIE, BIE	Keratin 10	KRT10	3858	ENSG00000186395	in cluster of class I keratins	Epidermolytic hyperkeratosis, 113800 (3), Autosomal recessive, Autosomal dominant; Ichthyosis with confetti, 609165 (3), Autosomal dominant; Ichthyosis, cyclic, with epidermolytic hyperkeratosis, 607602 (3), Autosomal dominant	
chr17	40861177	40867209	17q12	17q21.2	601687	KRT12	Keratin 12	KRT12	3859	ENSG00000187242		Meesmann corneal dystrophy, 122100 (3), Autosomal dominant	Krt12 (MGI:96687)
chr17	40875888	40885242	17q12-q21	17q21.2	608218	KRT20, CD20, KRT21	Keratin 20	KRT20	54474	ENSG00000171431			Krt20 (MGI:1914059)
chr17	40922695	40937642	17q21.2	17q21.2	606194	KRT23	Keratin 23	KRT23	25984	ENSG00000108244			Krt23 (MGI:2148866)
chr17	40958416	40966891	17q21.2	17q21.2	616678	KRT39	Keratin 38, type I	KRT39	390792	ENSG00000196859			Krt39 (MGI:3588208)
chr17	40977715	40987134	17q21.2	17q21.2	616679	KRT40, KA36	Keratin 40, type I	KRT40	125115	ENSG00000204889			Krt40 (MGI:3629968)
chr17	41026025	41027201	17q12-q21	17q21.2	608822	KRTAP-15, KAP1.5	Keratin-associated protein 1-5	KRTAP1-5	83895	ENSG00000221852			Krtap1-4 (MGI:3651229)
chr17	41029676	41030124	17q12-q21	17q21.2	608821	KRTAP1-4, KAP1.4	Keratin-associated protein 1-4	KRTAP1-4	728255	ENSG00000204887			
chr17	41033883	41034854	17q12-q21	17q21.2	608820	KRTAP1-3, KAP1.3, KAP1.2, KAP1.9	Keratin-associated protein 1-3	KRTAP1-3	81850	ENSG00000221880			Krtap9-3 (MGI:1922836)
chr17	41040558	41041460	17q12-q21	17q21.2	608819	KRTAP1-1, KAP1.1, KAP1.7, KAP1.6	Keratin-associated protein 1-1	KRTAP1-1	81851	ENSG00000188581			Krtap1-3 (MGI:3650443)
chr17	41345703	41350811	17q12-q21	17q21.2	602761	KRT33A, KRTHA3A, HA3I	Keratin 33A	KRT33A	3883	ENSG00000006059			
chr17	41363493	41369799	17q12-q21	17q21.2	602762	KRT33B, KRTHA3A, HA3II	Keratin 33B	KRT33B	3884	ENSG00000131738			
chr17	41377664	41383815	17q12-q21	17q21.2	602763	KRT34, KRTHA4, HA4	Keratin 34	KRT34	3885	ENSG00000131737			Krt34 (MGI:1309994)
chr17	41393723	41397591	17q12-q21	17q21.2	601077	KRT31, KRTHA1, HA1	Keratin 31	KRT31	3881	ENSG00000094796			Krt33b,Krt33a,Krt31 (MGI:1919138,MGI:1309993,MGI:1309991)
chr17	41420556	41424569	17q12-q21	17q21.2	604541	KRT37, KRTHA7, HA7	Keratin 37	KRT37	8688	ENSG00000108417			
chr17	41436368	41441343	17q12-q21	17q21.2	604542	KRT38,  KRTHA8, HA8	Keratin 38	KRT38	8687	ENSG00000171360			
chr17	41459512	41469251	17q12-q21	17q21.2	602760	KRT32, KRTHA2, HA2	Keratin 32	KRT32	3882	ENSG00000108759			Krt32 (MGI:1309995)
chr17	41476688	41482742	17q12-q21	17q21.2	602764	KRT35, KRTHA5	Keratin 35	KRT35	3886	ENSG00000197079			Krt35 (MGI:1858899)
chr17	41486135	41489863	17q12-q21	17q21.2	604540	KRT36, KRTHA6, HA6	Keratin 36	KRT36	8689	ENSG00000126337			Krt36 (MGI:109364)
chr17	41500980	41505612	17q21.2	17q21.2	148065	KRT13, WSN2	Keratin 13	KRT13	3860	ENSG00000171401	in same PFGE fragment as KRT10, KRT15	White sponge nevus 2, 615785 (3), Autosomal dominant	Krt13 (MGI:101925)
chr17	41513744	41521923	17q21-q22	17q21.2	148030	KRT15	Keratin 15	KRT15	3866		tightly linked to Hox-2 in mouse		Krt15 (MGI:96689)
chr17	41523616	41528388	17q21-q22	17q21.2	148020	KRT19	Keratin 19	KRT19	3880	ENSG00000171345	probably 17q21-q22		Krt19 (MGI:96693)
chr17	41565840	41572057	17q12-q21	17q21.2	607606	KRT9, EPPK	Keratin 9	KRT9	3857	ENSG00000171403		Palmoplantar keratoderma, epidermolytic, 144200 (3), Autosomal dominant	
chr17	41582278	41586894	17q12-q21	17q21.2	148066	KRT14	Keratin 14	KRT14	3861	ENSG00000186847		Dermatopathia pigmentosa reticularis, 125595 (3), Autosomal dominant; Epidermolysis bullosa simplex, Dowling-Meara type, 131760 (3), Autosomal dominant; Epidermolysis bullosa simplex, Koebner type, 131900 (3), Autosomal dominant; Epidermolysis bullosa simplex, Weber-Cockayne type, 131800 (3), Autosomal dominant; Epidermolysis bullosa simplex, recessive 1, 601001 (3), Autosomal recessive; Naegeli-Franceschetti-Jadassohn syndrome, 161000 (3), Autosomal dominant	Krt14 (MGI:96688)
chr17	41609777	41612826	17q12-q21	17q21.2	148067	KRT16, FNEPPK, PC1	Keratin 16	KRT16	3868	ENSG00000186832	probably 17q21-q22	Pachyonychia congenita 1, 167200 (3), Autosomal dominant; Palmoplantar keratoderma, nonepidermolytic, focal, 613000 (3), Autosomal dominant	Krt16 (MGI:96690)
chr17	41619439	41624629	17q12-q21	17q21.2	148069	KRT17, PC2, PCHC1	Keratin 17	KRT17	3872	ENSG00000128422	~5' to KRT16; probably 17q21-q22	Pachyonychia congenita 2, 167210 (3), Autosomal dominant; Steatocystoma multiplex, 184500 (3), Autosomal dominant	Krt17 (MGI:96691)
chr17	41712325	41715968	17q21	17q21.2	137250	GAS, GAST	Gastrin	GAST	2520	ENSG00000184502			Gast (MGI:104768)
chr17	41722638	41734645	17q21.2-q21.3	17q21.2	600947	HAP1, HLP, HAP2	Huntingtin-associated protein 1 (neuroan 1)	HAP1	9001	ENSG00000173805			Hap1 (MGI:1261831)
chr17	41754606	41786767	17q21	17q21.2	173325	JUP, DP3, PDGB, ARVD12	Junction plakoglobin	JUP	3728	ENSG00000173801	incorrectly mapped to 7; close to BRCA1	Arrhythmogenic right ventricular dysplasia 12, 611528 (3), Autosomal dominant; Naxos disease, 601214 (3), Autosomal recessive	Jup (MGI:96650)
chr17	41801951	41812709	17q21.2	17q21.2	617419	P3H4, SC65, LEPREL4	Proyly 3-hydroxylase 4	P3H4	10609	ENSG00000141696			P3h4 (MGI:1913430)
chr17	41812709	41823216	17q21.2	17q21.2	607063	FKBP10, FKBP65, OI11, BRKS1	FK506-binding protein 10	FKBP10	60681	ENSG00000141756		Bruck syndrome 1, 259450 (3), Autosomal recessive; Osteogenesis imperfecta, type XI, 610968 (3), Autosomal recessive	Fkbp10 (MGI:104769)
chr17	41835684	41848367	17q21.2	17q21.2	608778	KLHL10, SPGF11	Kelch-like 10	KLHL10	317719	ENSG00000161594		Spermatogenic failure 11, 615081 (3), Autosomal dominant	Klhl10 (MGI:2181067)
chr17	41866915	41930541	17q21.1	17q21.2	108728	ACLY	ATP citrate lyase	ACLY	47	ENSG00000131473			Acly (MGI:103251)
chr17	41930593	41966516	17q21.2	17q21.2	617095	TTC25, CILD35	Tetratricopeptide repeat domain-containing protein 25	TTC25	83538	ENSG00000204815		Ciliary dyskinesia, primary, 35, 617092 (3), Autosomal recessive	Ttc25 (MGI:1921657)
chr17	41966740	41977739	17q21	17q21.2	123830	CNP, CNP1	2', 3' cyclic nucleotide 3' phosphohydrolase	CNP	1267	ENSG00000173786	flanked by THRA1 and NGFR		Cnp (MGI:88437)
chr17	41976420	42021370	17q11-q23	17q21.2	601964	DANJC7, TTC2, TPR2	DnaJ, E. coli, homolog of, subfamily C, member 7 (tetratricopeptide repeat domain 2)	DNAJC7	7266	ENSG00000168259			Dnajc7 (MGI:1928373)
chr17	42017575	42025640	17q21.1	17q21.2	604497	NKIRAS2, KBRAS2	NFKB inhibitor-interacting Ras-like protein 2	NKIRAS2	28511	ENSG00000168256			Nkiras2 (MGI:1919216)
chr17	42101403	42112732	17q21.2	17q21.2	608588	DHX58, LGP2, D11LGP2	DEAH (Asp-Glu-Ala-His) box polypeptide 58	DHX58	79132	ENSG00000108771			Dhx58 (MGI:1931560)
chr17	42113110	42121408	17q21	17q21.2	602301	KAT2A, GCN5L2, GCN5	K(lysine) acetyltransferase 2A	KAT2A	2648	ENSG00000108773			Kat2a (MGI:1343101)
chr17	42122737	42123352	17q21.3	17q21.2	608344	HSPB9	Heat-shock 27kD protein 9	HSPB9	94086	ENSG00000260325			Hspb9 (MGI:1922732)
chr17	42124975	42155043	17q21.2	17q21.2	604037	RAB5C, RABL	Ras-associated protein RAB5c	RAB5C	5878	ENSG00000108774			Rab5c (MGI:105306)
chr17	42184059	42185451	17q21	17q21.2	602358	HCRT, OX, NRCLP1	Hypocretin	HCRT	3060	ENSG00000161610	mutation identified in 1 NRCLP1 patient	?Narcolepsy 1, 161400 (3), Autosomal dominant	Hcrt (MGI:1202306)
chr17	42199176	42288436	17q11.2	17q21.2	604260	STAT5B	Signal transducer and activator of transcription 5B	STAT5B	6777	ENSG00000173757	fused with RARA in PML	Growth hormone insensitivity with immunodeficiency, 245590 (3); Leukemia, acute promyelocytic, somatic, 102578 (3)	Stat5b (MGI:103035)
chr17	42287546	42311942	17q21.2	17q21.2	601511	STAT5A, STAT5, MGF	Signal transducer and activator of transcription 5a	STAT5A	6776	ENSG00000126561			Stat5a (MGI:103036)
chr17	42313323	42388502	17q21	17q21.2	102582	STAT3, APRF, HIES, ADMIO1	Signal transducer and activator of transcription-3 (acute-phase response factor)	STAT3	6774	ENSG00000168610		Autoimmune disease, multisystem, infantile-onset, 1, 615952 (3), Autosomal dominant; Hyper-IgE recurrent infection syndrome, 147060 (3), Autosomal dominant	Stat3 (MGI:103038)
chr17	42402448	42423319	17q21	17q21.2	603198	CAVIN1, PTRF	Caveolae-associated protein 1	CAVIN1	284119	ENSG00000177469		Lipodystrophy, congenital generalized, type 4, 613327 (3), Autosomal recessive	Cavin1 (MGI:1277968)
chr17	42458843	42522578	17q21	17q21.2	192130	ATP6V0A1, ATP6N1A, VPP1	ATPase, H+ transporting, lysosomal, V0 subunit A1	ATP6V0A1	535	ENSG00000033627			Atp6v0a1 (MGI:103286)
chr17	42534237	42544448	17q21	17q21.2	609701	NAGLU, MPS3B, CMT2V	N-acetylglucosaminidase, alpha-	NAGLU	4669	ENSG00000108784	mutation identified in 1 CMT2V family	?Charcot-Marie-Tooth disease, axonal, type 2V, 616491 (3), Autosomal dominant; Mucopolysaccharidosis type IIIB (Sanfilippo B), 252920 (3), Autosomal recessive	Naglu (MGI:1351641)
chr17	42552557	42555213	17q21.2	17q21.2	109684	HSD17B1, EDH17B2	Estradiol 17-beta-dehydrogenase-1	HSD17B1	3292	ENSG00000108786			Hsd17b1 (MGI:105077)
chr17	42562073	42566280	17q12-q21	17q21.2	609855	COASY, NBIA6	Coenzyme A synthase	COASY	80347	ENSG00000068120		Neurodegeneration with brain iron accumulation 6, 615643 (3), Autosomal recessive	Coasy (MGI:1918993)
chr17	42567059	42573202	17q21.1	17q21.2	602976	MLX, TCFL4	MAX-like protein X	MLX	6945	ENSG00000108788			Mlx (MGI:108398)
chr17	42572309	42577830	17q21.2	17q21.2	608665	PSMC3IP, TBPIP, GT198, HOP2, ODG3	PSMC3-interacting protein	PSMC3IP	29893	ENSG00000131470		Ovarian dysgenesis 3, 614324 (3), Autosomal recessive	Psmc3ip (MGI:1098610)
chr17	42579507	42609426	17q21.2	17q21.2	616498	FAM134C	Family with sequence similarity 134, member C	RETREG3	162427	ENSG00000141699			Retreg3 (MGI:1915248)
chr17	42609339	42615237	17q21	17q21.2	191135	TUBG1, CDCBM4	Tubulin, gamma 1	TUBG1	7283	ENSG00000131462		Cortical dysplasia, complex, with other brain malformations 4, 615412 (3), Autosomal dominant	Tubg1 (MGI:101834)
chr17	42659247	42667005	17q21	17q21.2	605785	TUBG2	Tubulin, gamma 2	TUBG2	27175	ENSG00000037042	pseudogene on chr. 7		Tubg2 (MGI:2144208)
chr17	42679401	42681826	17q21.2	17q21.2	600240	CCR10, GPR2	Chemokine (C-C) receptor 10	CCR10	2826	ENSG00000184451			Ccr10 (MGI:1096320)
chr17	42679766	42699992	17q21	17q21.2	602346	CNTNAP1, CASPR, P190	Contactin-associated protein 1	CNTNAP1	8506	ENSG00000108797		Lethal congenital contracture syndrome 7, 616286 (3), Autosomal recessive	Cntnap1 (MGI:1858201)
chr17	42700274	42745095	17q21.1-q21.3	17q21.2	601674	EZH1	Enhancer of zeste, Drosophila, homolog of, 1	EZH1	2145	ENSG00000108799			Ezh1 (MGI:1097695)
chr17	42761193	42763040	17q12-q21.1	17q21.2	605154	RAMP2	Receptor activity-modifying protein 2	RAMP2	10266	ENSG00000131477			Ramp2 (MGI:1859650)
chr17	42773435	42779599	17q21.3	17q21.2	610907	VPS25, FAP20	Vacuolar protein sorting 25, S. cerevisiae, homolog of	VPS25	84313	ENSG00000131475			Vps25 (MGI:106354)
chr17	42779700	42797065	17q21-q22	17q21.2	601844	WNK4, PRKWNK4, PHA2B	WNK lysine deficient protein kinase 4	WNK4	65266	ENSG00000126562		Pseudohypoaldosteronism, type IIB, 614491 (3), Autosomal dominant	Wnk4 (MGI:1917097)
chr17	42797617	42798724	17q21.31	17q21.2	614775	COA3, CCDC56	Cytochrome c oxidase assembly factor 3	COA3	28958	ENSG00000183978			Coa3 (MGI:1098757)
chr17	42800000	46800000	17q21.31		613533	DUP17q21.31, C17DUPq21.31	Chromosome 17q21.31 duplication syndrome				contiguous gene duplication syndrome	Chromosome 17q21.31 duplication syndrome, 613533 (4)	
chr17	42800000	52100000	17q21.3		603279	ERDA1	Expanded repeat domain, CAG/CTG, 1	ERDA1	9030		no apparent pathology		
chr17	42800000	59500000	17q21.31-q22		615162	MRT35	Mental retardation, autosomal recessive 35		101409266		between rs4792947 and rs11079258	Mental retardation, autosomal recessive 35, 615162 (2), Autosomal recessive	
chr17	42810131	42824315	17q21	17q21.31	604378	BECN1	Beclin 1	BECN1	8678	ENSG00000126581			Becn1 (MGI:1891828)
chr17	42833141	42843759	17q12-q21	17q21.31	605129	PSME3, PA28G	Proteasome activator subunit 3	PSME3	10197	ENSG00000131467			Psme3 (MGI:1096366)
chr17	42844582	42850711	17q21	17q21.31	602268	AOC2, RAO	Amine oxidase, copper-containing, 2	AOC2	314	ENSG00000131480			Aoc2 (MGI:2668431)
chr17	42851181	42858129	17q21	17q21.31	603735	AOC3, HPAO, VAP1	Amine oxidase, copper-containing 3	AOC3	8639	ENSG00000131471			Aoc3 (MGI:1306797)
chr17	42900796	42914432	17q21	17q21.31	613742	G6PC, G6PT	Glucose-6-phosphatase, catalytic	G6PC	2538	ENSG00000131482		Glycogen storage disease Ia, 232200 (3), Autosomal recessive	G6pc (MGI:95607)
chr17	42950525	42964497	17q21.31	17q21.31	613212	AARSD1	Alanyl-tRNA synthetase domain-containing 1	AARSD1	80755	ENSG00000266967			Aarsd1 (MGI:1916934)
chr17	42998272	43002958	17q21.1-q21.2	17q21.31	607526	RPL27, DBA16	Ribosomal protein L27	RPL27	6155	ENSG00000131469	mutation identified in 1 DBA16 patient	?Diamond-Blackfan anemia 16, 617408 (3), Autosomal dominant	Rpl27 (MGI:98036)
chr17	43006724	43014458	17q21	17q21.31	600735	IFI35	Interferon-induced protein-35	IFI35	3430	ENSG00000068079			Ifi35 (MGI:1917360)
chr17	43014604	43022441	17q21	17q21.31	604631	VAT1	Vesicle amine transport protein 1	VAT1	10493	ENSG00000108828			Vat1 (MGI:1349450)
chr17	43025240	43032040	17q21	17q21.31	601555	RND2, ARHN, RHO7	Ras homolog gene family, member N (GTP-binding protein Rho7)	RND2	8153	ENSG00000108830			Rnd2 (MGI:1338755)
chr17	43044294	43125482	17q21	17q21.31	113705	BRCA1, PSCP, BROVCA1, PNCA4, FANCS	Breast cancer-1 gene	BRCA1	672	ENSG00000012048		{Breast-ovarian cancer, familial, 1}, 604370 (3), Autosomal dominant, Multifactorial; Fanconi anemia, complementation group S, 617883 (3), Autosomal recessive; {Pancreatic cancer, susceptibility to, 4}, 614320 (3)	Brca1 (MGI:104537)
chr17	43170309	43211688	17q21.1	17q21.31	166945	NBR1, M17S2	Neighbor of BRCA1 gene 1 (membrane component, chromosome 17, surface marker 2)	NBR1	4077	ENSG00000188554			Nbr1 (MGI:108498)
chr17	43233789	43233976	17q21-q22	17q21.31	180690	RNU2-1, RNU2	RNA, U2 small nuclear, 1	RNU2-1	6066				
chr17	43398984	43401135	17q12-q21	17q21.31	600732	ARL4D, ARF4L	ADP-ribosylation factor-like 4D	ARL4D	379	ENSG00000175906			Arl4d (MGI:1933155)
chr17	43483864	43544786	17q21.31	17q21.31	600396	DHX8, DDX8, HRH1	DEAH (Asp-Glu-Ala-His) box polypeptide 8	DHX8	1659	ENSG00000067596			Dhx8 (MGI:1306823)
chr17	43527842	43546431	17q21	17q21.31	600711	ETV4	ETS variant gene-4 (E1A enhancer-binding protein, E1AF)	ETV4	2118	ENSG00000175832			Etv4 (MGI:99423)
chr17	43640388	43661976	17q21	17q21.31	600147	MEOX1, MOX1, KFS2	Mesenchyme homeo box 1 (Mox1, mouse, homolog of)	MEOX1	4222	ENSG00000005102		Klippel-Feil syndrome 2, 214300 (3), Autosomal recessive	Meox1 (MGI:103220)
chr17	43753730	43758787	17q12-q21	17q21.31	605740	SOST, VBCH, CDD, SOST1	Sclerostin	SOST	50964	ENSG00000167941		Craniodiaphyseal dysplasia, autosomal dominant, 122860 (3), Autosomal dominant; Sclerosteosis 1, 269500 (3), Autosomal recessive; Van Buchem disease, 239100 (3), Autosomal recessive	Sost (MGI:1921749)
chr17	43766120	43778999	17q21	17q21.31	600183	DUSP3, VHR	Dual specificity phosphatase-3 (vaccinia virus phosphatase VH1-related)	DUSP3	1845	ENSG00000108861			Dusp3 (MGI:1919599)
chr17	43800798	43833193	17q12-q21	17q21.31	601114	MPP3, DLG3	Membrane protein, palmitoylated-3 (MAGUK p55 subfamily member 3)	MPP3	4356	ENSG00000161647			Mpp3 (MGI:1328354)
chr17	43847096	43863638	17q21.31	17q21.31	610520	CD300LG, TREM4, CLM9	CD300 antigen-like family, member G	CD300LG	146894	ENSG00000161649			Cd300lg (MGI:1289168)
chr17	43875356	43909710	17q12-q21	17q21.31	600723	MPP2, DLG2	Membrane protein, palmitoylated-2 (MAGUK p55 subfamily member 2)	MPP2	4355	ENSG00000108852			Mpp2 (MGI:1858257)
chr17	43940801	43944211	17q12-q21	17q21.31	167780	PPY	Pancreatic polypeptide	PPY	5539	ENSG00000108849	in rat, close to GH		Ppy (MGI:97753)
chr17	43952732	44004468	17q21	17q21.31	600781	PYY	Peptide YY	PYY	5697	ENSG00000131096	10kb from PPY		Pyy (MGI:99924)
chr17	44004545	44009067	17q21.31	17q21.31	608300	NAGS	N-acetylglutamate synthase	NAGS	162417	ENSG00000161653		N-acetylglutamate synthase deficiency, 237310 (3), Autosomal recessive	Nags (MGI:2387600)
chr17	44034634	44067618	17q21.31	17q21.31	611793	LSM12	LSM12, S. cerevisiae, homolog of	LSM12	124801	ENSG00000161654			Lsm12 (MGI:1919592)
chr17	44070699	44076343	17q21	17q21.31	611045	G6PC3, UGRP, SCN4	Glucose-6-phosphatase, catalytic, 3	G6PC3	92579	ENSG00000141349		Dursun syndrome, 612541 (3), Autosomal recessive; Neutropenia, severe congenital 4, autosomal recessive, 612541 (3), Autosomal recessive	G6pc3 (MGI:1915651)
chr17	44076752	44123650	17q21	17q21.31	605315	HDAC5	Histone deacetylase 5	HDAC5	10014	ENSG00000108840			Hdac5 (MGI:1333784)
chr17	44170705	44179082	17q21.31	17q21.31	615056	ASB16	Ankyrin repeat- and SOCS box-containing protein 16	ASB16	92591	ENSG00000161664			Asb16 (MGI:2654437)
chr17	44205032	44221625	17q21.3	17q21.31	600673	UBTF, UBF, CONDBA	Upstream binding transcription factor, RNA polymerase I	UBTF	7343	ENSG00000108312		Neurodegeneration, childhood-onset, with brain atrophy, 617672 (3), Autosomal dominant	Ubtf (MGI:98512)
chr17	44226960	44230549	17q21-q22	17q21.31	600739	SHCL1	SHC (Src homology 2 domain-containing) transforming protein-like 1	SHC1P2	6466				
chr17	44248389	44268160	17q21-q22	17q21.31	109270	SLC4A1, AE1, EPB3, SPH4, SAO, CHC	Solute carrier family 4, anion exchanger, member 1 (erythrocyte membrane protein band 3, Diego blood group)	SLC4A1	6521	ENSG00000004939		[Blood group, Diego], 110500 (3); [Blood group, Froese], 601551 (3); [Blood group, Swann], 601550 (3); [Blood group, Waldner], 112010 (3); [Blood group, Wright], 112050 (3); Cryohydrocytosis, 185020 (3), Autosomal dominant; [Malaria, resistance to], 611162 (3); Ovalocytosis, SA type, 166900 (3), Autosomal dominant; Renal tubular acidosis, distal, AD, 179800 (3), Autosomal dominant; Renal tubular acidosis, distal, AR, 611590 (3), Autosomal recessive; Spherocytosis, type 4, 612653 (3), Autosomal dominant	Slc4a1 (MGI:109393)
chr17	44308558	44318669	17q21.3	17q21.31	605448	RUNDC3A, RPIP8	RUN domain contain 3A	RUNDC3A	10900	ENSG00000108309			Rundc3a (MGI:1858752)
chr17	44319624	44324869	17q21.31	17q21.31	610820	SLC25A39, CGI69	Solute carrier family 25, member 39	SLC25A39	51629	ENSG00000013306			Slc25a39 (MGI:1196386)
chr17	44345085	44353105	17q21.32	17q21.31	138945	GRN, CLN11	Granulin	GRN	2896	ENSG00000030582		Aphasia, primary progressive, 607485 (3), Autosomal dominant; Ceroid lipofuscinosis, neuronal, 11, 614706 (3), Autosomal recessive; Frontotemporal lobar degeneration with ubiquitin-positive inclusions, 607485 (3), Autosomal dominant	Grn (MGI:95832)
chr17	44372180	44389600	17q21.32	17q21.31	607759	ITGA2B, GP2B, CD41B, GT, BDPLT2, BDPLT16	Integrin, alpha-2b (platelet glycoprotein IIb of IIb/IIIa complex, antigen CD41B)	ITGA2B	3674	ENSG00000005961	3' to GP3A; BAK platelet antigen	Bleeding disorder, platelet-type, 16, autosomal dominant, 187800 (3), Autosomal dominant; Glanzmann thrombasthenia, 273800 (3), Autosomal recessive; Thrombocytopenia, neonatal alloimmune, BAK antigen related (3)	Itga2b (MGI:96601)
chr17	44395276	44503601	17q21.31	17q21.31	614396	GPATCH8, KIAA0553	G-patch domain-containing protein 8	GPATCH8	23131	ENSG00000186566			Gpatch8 (MGI:1918667)
chr17	44557443	44561261	17q21.1	17q21.31	600667	FZD2	Frizzled, Drosophila, homolog of, 2	FZD2	2535	ENSG00000180340			Fzd2 (MGI:1888513)
chr17	44656393	44677085	17q21.31	17q21.31	616934	MEIOC, C17orf104	Meiosis-specific protein with coiled-coil domain	MEIOC	284071	ENSG00000180336			Meioc (MGI:2686410)
chr17	44708580	44752731	17q21	17q21.31	611661	DBF4B, DRF1, ASKL1	DBF4, S. cerevisiae, homolog of, B	DBF4B	80174	ENSG00000161692			
chr17	44759150	44781845	17q21.3	17q21.31	155120	ADAM11, MDC	A disintegrin and metalloproteinase domain 11	ADAM11	4185	ENSG00000073670			Adam11 (MGI:1098667)
chr17	44850286	44899624	17q21.31	17q21.31	603892	EFTUD2, KIAA0031, MFDGA	Elongation factor Tu GTP-binding domain-containing 2	EFTUD2	9343	ENSG00000108883		Mandibulofacial dysostosis, Guion-Almeida type, 610536 (3), Autosomal dominant	Eftud2 (MGI:1336880)
chr17	44899711	44903678	17q21.31	17q21.31	614677	CCDC103, SMH, PR46B, CILD17	Coiled-coil domain-containing protein 103	CCDC103	388389	ENSG00000167131		Ciliary dyskinesia, primary, 17, 614679 (3), Autosomal recessive	Ccdc103 (MGI:1920543)
chr17	44905625	44915551	17q21	17q21.31	137780	GFAP, ALXDRD	Glial fibrillary acidic protein	GFAP	2670	ENSG00000131095		Alexander disease, 203450 (3), Autosomal dominant	Gfap (MGI:95697)
chr17	44924710	44947745	17q21.31	17q21.31	614570	KIF18B	Kinesin family member 18B	KIF18B	146909	ENSG00000186185			Kif18b (MGI:2446979)
chr17	44959692	44968275	17q21	17q21.31	611586	C1QL1, CRF, C1QRF	Complement component 1, q subcomponent-like 1	C1QL1	10882	ENSG00000131094			C1ql1 (MGI:1344400)
chr17	45061298	45109015	17q21.31	17q21.31	160993	NMT1, NMT	N-myristoyltransferase 1	NMT1	4836	ENSG00000136448			Nmt1 (MGI:102579)
chr17	45147316	45152100	Chr.17	17q21.31	607328	CLP1, HIS1	Cardiac lineage protein 1	HEXIM1	10614	ENSG00000186834			Hexim1 (MGI:2385923)
chr17	45159947	45170039	17q21.32	17q21.31	615695	HEXIM2	Hexamethylene bis acetamide-inducible protein 2	HEXIM2	124790	ENSG00000168517			Hexim2 (MGI:1918309)
chr17	45220267	45247321	17q21	17q21.31	604656	FMNL, C17orf1B	Formin-like	FMNL1	752	ENSG00000184922			
chr17	45263118	45317063	17q21	17q21.31	604655	MAP3K14, NIK, HSNIK	Mitogen-activated protein kinase kinase kinase-14	MAP3K14	9020	ENSG00000006062			Map3k14 (MGI:1858204)
chr17	45393901	45432915	17q21	17q21.31	610591	ARHGAP27, CAMGAP1	RHO GTPase-activating protein 27	ARHGAP27	201176	ENSG00000159314			Arhgap27 (MGI:1916903)
chr17	45434261	45490779	17q21.3	17q21.31	611466	PLEKHM1, AP162, KIAA0356, OPTB6	Pleckstrin homology domain-containing protein, family M, member 1	PLEKHM1	9842	ENSG00000225190		Osteopetrosis, autosomal recessive 6, 611497 (3)	Plekhm1 (MGI:2443207)
chr17	45784279	45835827	17q12-q22	17q21.31	122561	CRHR1, CRHR	Corticotropin releasing hormone receptor 1	CRHR1	1394	ENSG00000120088			Crhr1 (MGI:88498)
chr17	45844889	45847071	17q21.31	17q21.31	608284	IMP5	Intramembrane protease 5	SPPL2C	162540	ENSG00000185294			Sppl2c (MGI:3045264)
chr17	45894381	46028333	17q21.1	17q21.31	157140	MAPT, MTBT1, DDPAC, MSTD	Microtubule-associated protein tau	MAPT	4137	ENSG00000186868	see 6p21	Dementia, frontotemporal, with or without parkinsonism, 600274 (3), Autosomal dominant; {Parkinson disease, susceptibility to}, 168600 (3), Isolated cases, Multifactorial; Pick disease, 172700 (3), Autosomal dominant, Isolated cases; Supranuclear palsy, progressive, 601104 (3), Autosomal dominant; Supranuclear palsy, progressive atypical, 260540 (3), Autosomal recessive	Mapt (MGI:97180)
chr17	45999249	45999693	17q21.1	17q21.31	607067	STH	Saitohin	STH	246744	ENSG00000256762	in intron 9 of TAU		
chr17	46027334	46225373	17q21.31	17q21.31	612452	KANSL1, KIAA1267, MSL1V1, KDVS	KAT8 regulatory NSL complex subunit 1	KANSL1	284058	ENSG00000120071		Koolen-De Vries syndrome, 610443 (3), Autosomal dominant	Kansl1 (MGI:1923969)
chr17	46295130	46337793	17q21.31-q21.32	17q21.31	616555	LRRC37A	Leucine-rich repeat-containing protein 37A	LRRC37A	9884	ENSG00000176681			
chr17	46512709	47049127	17q21.31-q21.32	17q21.31-q21.32	616556	LRRC37A2	Leucine-rich repeat-containing protein 37A2	LRRC37A2	474170	ENSG00000238083			
chr17	46590668	46757463	17q21-q22	17q21.31	601633	NSF	N-ethylmaleimide-sensitive factor	NSF	4905	ENSG00000073969			Nsf (MGI:104560)
chr17	46762505	46818759	17q21	17q21.31-q21.32	165330	WNT3, INT4, TETAMS	Wingless-type MMTV integration site family, member 3	WNT3	7473	ENSG00000108379	mutation identified in 1 TETAMS family	?Tetra-amelia syndrome, 273395 (3), Autosomal recessive	Wnt3 (MGI:98955)
chr17	46833200	46886729	17q21	17q21.32	602864	WNT15	Wingless-type MMTV integration site family, member 15	WNT9B	7484	ENSG00000158955			Wnt9b (MGI:1197020)
chr17	46923107	46975518	17q21	17q21.32	604027	GOSR2, GS27, EPM6	Golgi snap receptor complex member 2	GOSR2	9570	ENSG00000108433		Epilepsy, progressive myoclonic 6, 614018 (3), Autosomal recessive	Gosr2 (MGI:1927204)
chr17	47117696	47189338	17q12-q23.2	17q21.32	116946	CDC27	Cell division cycle 27	CDC27	996	ENSG00000004897	between ERBB2 and PRKCA		Cdc27 (MGI:102685)
chr17	47209016	47227649	17q21.32	17q21.32	160770	MYL4	Myosin, light polypeptide-4, alkali, atrial, embryonic	MYL4	4635	ENSG00000198336	mutation identified in 1 ATFB18 family	?Atrial fibrillation, familial, 18, 617280 (3), Autosomal dominant	Myl4 (MGI:97267)
chr17	47253841	47312710	17q21.32	17q21.32	173470	ITGB3, GP3A, GT, BDPLT2, BDPLT16	Integrin, beta-3 (platelet glycoprotein IIIa; antigen CD61)	ITGB3	3690	ENSG00000259207	in same 260kb fragment as GP2B; PL(A) platelet antigen	Bleeding disorder, platelet-type, 16, autosomal dominant, 187800 (3), Autosomal dominant; Glanzmann thrombasthenia, 273800 (3), Autosomal recessive; {Myocardial infarction, susceptibility to}, 608446 (3); Purpura, posttransfusion (3); Thrombocytopenia, neonatal alloimmune (3)	Itgb3 (MGI:96612)
chr17	47522949	47623275	17q21	17q21.32	606793	NPEPPS, PSA, MP100	Aminopeptidase, puromycin-sensitive	NPEPPS	9520	ENSG00000141279			Npepps (MGI:1101358)
chr17	47649837	47683637	17q21	17q21.32	602738	KPNB1	Karyopherin beta-1	KPNB1	3837	ENSG00000108424			Kpnb1 (MGI:107532)
chr17	47694064	47712062	17q21.32	17q21.32	608476	TBKBP1, PROSAPIP2, KIAA0775	TBK1-binding protein 1	TBKBP1	9755	ENSG00000198933			Tbkbp1 (MGI:1920424)
chr17	47733243	47746118	17q21.3	17q21.32	604895	TBX21, TBET	T-box 21	TBX21	30009	ENSG00000073861		Asthma and nasal polyps, 208550 (3), Autosomal recessive; {Asthma, aspirin-induced, susceptibility to}, 208550 (3), Autosomal recessive	Tbx21 (MGI:1888984)
chr17	47807366	47821821	17q21.2	17q21.32	606735	OSBPL7, ORP7	Oxysterol-binding protein-like protein 7	OSBPL7	114881	ENSG00000006025			Osbpl7 (MGI:1918490)
chr17	47823271	47831540	17q21.3	17q21.32	611825	MRPL10, MRPL8	Mitochondrial ribosomal protein L10	MRPL10	124995	ENSG00000159111			Mrpl10 (MGI:1333801)
chr17	47837680	47841332	17q21.3	17q21.32	614966	SCRN2, SES2	Secernin 2	SCRN2	90507	ENSG00000141295			Scrn2 (MGI:1343092)
chr17	47896031	47932270	17q21.32	17q21.32	601801	SP2	Transcription factor Sp2	SP2	6668	ENSG00000167182			Sp2 (MGI:1926162)
chr17	47941522	47949307	17q21.32	17q21.32	603287	PNPO	Pyridoxamine 5'-phosphate oxidase	PNPO	55163	ENSG00000108439		Pyridoxamine 5'-phosphate oxidase deficiency, 610090 (3), Autosomal recessive	Pnpo (MGI:2144151)
chr17	47967903	47981785	17q21.31	17q21.32	608202	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	CDK5RAP3	80279	ENSG00000108465			Cdk5rap3 (MGI:1933126)
chr17	48026166	48048085	17q21.32	17q21.32	615526	COPZ2	Coatomer protein complex, subunit zeta-2	COPZ2	51226	ENSG00000005243			Copz2 (MGI:1929008)
chr17	48037160	48037246	17q21.32	17q21.32	613788	MIR152, MIRN152	Micro RNA 152	MIR152	406943				
chr17	48048304	48061544	17q21.3	17q21.32	163260	NFE2L1, NRF1	Nuclear factor, erythroid-derived 2-like 1	NFE2L1	4779	ENSG00000082641			Nfe2l1 (MGI:99421)
chr17	48107532	48123600	17q21.32	17q21.32	614906	SNX11	Sorting nexin 11	SNX11	29916	ENSG00000002919			Snx11 (MGI:1921729)
chr17	48133437	48430249	17q21.32	17q21.32	604969	SKAP1, SCAP1, SKAP55	SRC kinase-associated phosphoprotein 1, 55kD	SKAP1	8631	ENSG00000141293			Skap1 (MGI:1925723)
chr17	48529444	48530909	17q21-q22	17q21.32	142968	HOXB1, HOX2I, HCFP3	Homeo box-B1	HOXB1	3211	ENSG00000120094		Facial paresis, hereditary congenital, 3, 614744 (3), Autosomal recessive	Hoxb1 (MGI:96182)
chr17	48542654	48545030	17q21-q22	17q21.32	142967	HOXB2, HOX2H	Homeo box-B2	HOXB2	3212	ENSG00000173917			Hoxb2 (MGI:96183)
chr17	48548869	48590271	17q21-q22	17q21.32	142966	HOXB3, HOX2G	Homeo box-B3	HOXB3	3213	ENSG00000120093			Hoxb3 (MGI:96184)
chr17	48575506	48578380	17q21-q22	17q21.32	142965	HOXB4, HOX2F	Homeo box-B4	HOXB4	3214	ENSG00000182742			Hoxb4 (MGI:96185)
chr17	48579837	48579946	17q21	17q21.32	610173	MIR10A	Micro RNA 10A	MIR10A	406902				
chr17	48591256	48593740	17q21-q22	17q21.32	142960	HOXB5, HOX2A	Homeo box-B5	HOXB5	3215	ENSG00000120075			Hoxb5 (MGI:96186)
chr17	48595735	48604991	17q21-q22	17q21.32	142961	HOXB6, HOX2B	Homeo box-B6	HOXB6	3216	ENSG00000108511			Hoxb6 (MGI:96187)
chr17	48607231	48611020	17q21-q22	17q21.32	142962	HOXB7, HOX2C	Homeo box-B7	HOXB7	3217	ENSG00000260027			Hoxb7 (MGI:96188)
chr17	48612345	48619530	17q21-q22	17q21.32	142963	HOXB8, HOX2D	Homeo box-B8	HOXB8	3218	ENSG00000120068			Hoxb8 (MGI:96189)
chr17	48621155	48626472	17q21-q22	17q21.32	142964	HOXB9, HOX2E	Homeo box-B9	HOXB9	3219	ENSG00000170689			Hoxb9 (MGI:96190)
chr17	48632489	48632558	17q21-q22	17q21.32	608632	MIR196A1, MIRN196A1	Micro RNA 196A1	MIR196A1	406972				
chr17	48720801	48724757	17q21.3	17q21.32	610787	HOXBAS5, PRAC2	HOXB cluster antisense RNA 5	PRAC2	360205	ENSG00000229637			
chr17	48721718	48722519	17q21.3	17q21.32	609819	PRAC1	Prostate, rectum, and colon gene	PRAC1	84366	ENSG00000159182			
chr17	48724762	48728748	17q21.2	17q21.32	604607	HOXB13	Homeo box B13	HOXB13	10481	ENSG00000159184			Hoxb13 (MGI:107730)
chr17	48762230	48817246	17q21.32	17q21.32	610849	TTLL6	Tubulin tyrosine ligase-like family, member 6	TTLL6	284076	ENSG00000170703			Ttll6 (MGI:2683461)
chr17	48892785	48895870	Chr.17	17q21.32	603192	ATP5G1	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C, isoform 1	ATP5MC1	516	ENSG00000159199			Atp5g1 (MGI:107653)
chr17	48908368	48929059	17q21.32	17q21.32	611362	UBE2Z, USE1	Ubiquitin-conjugating enzyme E2Z	UBE2Z	65264	ENSG00000159202			Ube2z (MGI:1343160)
chr17	48930095	48944841	17q21.32	17q21.32	610904	SNF8, VPS22, EAP30	SNF8, S. cerevisiae, homolog of	SNF8	11267	ENSG00000159210			Snf8 (MGI:1343161)
chr17	48958555	48968592	17q21.3-q22	17q21.32	137240	GIP	Gastric inhibitory polypeptide	GIP	2695	ENSG00000159224			Gip (MGI:107504)
chr17	48997411	49056144	17q21.3	17q21.32	608288	IGF2BP1, IMP1, CRDBP, ZBP1	Insulin-like growth factor 2 mRNA-binding protein 1	IGF2BP1	10642	ENSG00000159217			Igf2bp1 (MGI:1890357)
chr17	49120346	49170721	17q21.2	17q21.32	111730	B4GALGT2, GALGT2, SD	Beta-1,4-N-acetyl-galactosaminyl transferase 2	B4GALNT2	124872	ENSG00000167080			B4galnt2 (MGI:1342058)
chr17	49206233	49210573	17q21	17q21.32	139391	GNGT2	Guanine nucleotide-binding protein, gamma-transducing activity polypeptide 2	GNGT2	2793	ENSG00000167083			Gngt2 (MGI:893584)
chr17	49210226	49223224	17q21.3	17q21.32	606363	NESH	NESH protein	ABI3	51225	ENSG00000108798			Abi3 (MGI:1913860)
chr17	49289205	49362472	17q21.32	17q21.32-q21.33	613907	ZNF652, KIAA0924	Zinc finger protein 652	ZNF652	22834	ENSG00000198740			Zfp652 (MGI:2442221)
chr17	49404047	49414904	17q21	17q21.33	176705	PHB	Prohibitin	PHB	5245	ENSG00000167085		{Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant	Phb (MGI:97572)
chr17	49495292	49515019	17q21-q22	17q21.33	162010	NGFR, TNFRSF16	Nerve growth factor receptor	NGFR	4804	ENSG00000064300	distal to APL breakpoint, q21; < 0.5mb from HOX2		Ngfr (MGI:97323)
chr17	49575935	49583809	17q21.33	17q21.33	604636	NXPH3, NPH3	Neuroexophilin 3	NXPH3	11248	ENSG00000182575			Nxph3 (MGI:1336188)
chr17	49598883	49678162	17q21.33	17q21.33	602650	SPOP	Speckle-type POZ protein	SPOP	8405	ENSG00000121067			Spop (MGI:1343085)
chr17	49700933	49708172	17q21.33	17q21.33	610790	SLC35B1, UGTREL1	Solute carrier family 35, member B1	SLC35B1	10237	ENSG00000121073			Slc35b1 (MGI:1343133)
chr17	49788618	49829095	17q21.32	17q21.33	609880	KAT7, MYST2, HBO1	K(lysine) acetyltransferase 7	KAT7	11143	ENSG00000136504			Kat7 (MGI:2182799)
chr17	49838308	49848016	17q21.3	17q21.33	607833	RAC4, PPTC, HK1	Tachykinin 4	TAC4	255061	ENSG00000176358			
chr17	49968969	49974958	17q21.3-q22	17q21.33	601911	DLX4, DLX7, DLX8, OFC15	Distal-less homeo box-4	DLX4	1748	ENSG00000108813	mutation identified in 1 OFC15 family	?Orofacial cleft 15, 616788 (3), Autosomal dominant	Dlx4 (MGI:94904)
chr17	49990004	49995223	17q21.3-q22	17q21.33	600525	DLX3, TDO, AI4	Distal-less homeo box-3	DLX3	1747	ENSG00000064195		Amelogenesis imperfecta, type IV, 104510 (3), Autosomal dominant; Trichodontoosseous syndrome, 190320 (3), Autosomal dominant	Dlx3 (MGI:94903)
chr17	50055967	50090484	17q21.33	17q21.33	605025	ITGA3, CD49C, GAPB3, ILNEB	Integrin, alpha-3	ITGA3	3675	ENSG00000005884		Interstitial lung disease, nephrotic syndrome, and epidermolysis bullosa, congenital, 614748 (3), Autosomal recessive	Itga3 (MGI:96602)
chr17	50094736	50111368	17q21.33	17q21.33	602525	PDK2	Pyruvate dehydrogenase kinase, isoenzyme 2	PDK2	5164	ENSG00000005882			Pdk2 (MGI:1343087)
chr17	50133734	50151026	17q21.33	17q21.33	603325	PPP1R9B, SPINO	Protein phosphatase 1, regulatory subunit 9B	PPP1R9B	84687	ENSG00000108819			Ppp1r9b (MGI:2387581)
chr17	50165516	50175931	17q12-q21.33	17q21.33	600119	SGCA, ADL, DAG2, LGMD2D, DMDA2	Sarcoglycan, alpha (50kD dystrophin-associated glycoprotein; adhalin)	SGCA	6442	ENSG00000108823		Muscular dystrophy, limb-girdle, type 2D, 608099 (3), Autosomal recessive	Sgca (MGI:894698)
chr17	50171427	50172475	17q21.33	17q21.33	608101	HILS1	Spermatid-specific linker histone H1-like protein	HILS1	373861				
chr17	50184095	50201648	17q21.31-q22	17q21.33	120150	COL1A1, OI1, OI2, OI3, OI4, EDSARTH1	Collagen I, alpha-1 polypeptide	COL1A1	1277	ENSG00000108821	fused with PDGFB in DFPB	{Bone mineral density variation QTL, osteoporosis}, 166710 (3), Autosomal dominant; Caffey disease, 114000 (3), Autosomal dominant; Ehlers-Danlos syndrome, arthrochalasia type, 1, 130060 (3), Autosomal dominant; Osteogenesis imperfecta, type I, 166200 (3), Autosomal dominant; Osteogenesis imperfecta, type II, 166210 (3), Autosomal dominant; Osteogenesis imperfecta, type III, 259420 (3), Autosomal dominant; Osteogenesis imperfecta, type IV, 166220 (3), Autosomal dominant	Col1a1 (MGI:88467)
chr17	50346031	50361184	17q21.3-q22	17q21.33	608125	XYLT2, XT2, SOS	Xylosyltransferase 2	XYLT2	64132	ENSG00000015532		{Pseudoxanthoma elasticum, modifier of severity of}, 264800 (3), Autosomal recessive; Spondyloocular syndrome, 605822 (3), Autosomal recessive	Xylt2 (MGI:2444797)
chr17	50367866	50373200	17q21.3-q22	17q21.33	611837	MRPL27	Mitochondrial ribosomal protein L27	MRPL27	51264	ENSG00000108826			Mrpl27 (MGI:2137224)
chr17	50373219	50381478	17q21.3	17q21.33	610885	EME1	Essential meiotic endonuclease 1, S. pombe, homolog of, 1	EME1	146956	ENSG00000154920			Eme1 (MGI:3576783)
chr17	50381232	50397552	17q21.33	17q21.33	614854	LRRC59, p34	Leucine-rich repeat-containing protein 59	LRRC59	55379	ENSG00000108829			Lrrc59 (MGI:2138133)
chr17	50426157	50474844	17q21.33	17q21.33	610465	ACSF2, FLJ20920	Acyl-CoA synthetase family member 2	ACSF2	80221	ENSG00000167107			Acsf2 (MGI:2388287)
chr17	50464491	50469880	17q21.33	17q21.33	602178	CHAD	Chondroadherin	CHAD	1101	ENSG00000136457			Chad (MGI:1096866)
chr17	50507777	50531501	17q21	17q21.33	609835	MYCBPAP, AMAP1	MYCBP-associated protein	MYCBPAP	84073	ENSG00000136449			Mycbpap (MGI:2388726)
chr17	50532686	50543749	Chr.17	17q21.33	607264	EPN3	Epsin 3	EPN3	55040	ENSG00000049283			Epn3 (MGI:1919139)
chr17	50547088	50555851	17q21.33	17q21.33	613939	SPATA20, SSP411	Spermatogenesis-associated protein 20	SPATA20	64847	ENSG00000006282			Spata20 (MGI:2183449)
chr17	50560932	50629624	17q22	17q21.33	604065	CACNA1G, SCA42	Calcium channel, voltage-dependent, T type, alpha-1G subunit	CACNA1G	8913	ENSG00000006283		Spinocerebellar ataxia 42, 616795 (3), Autosomal dominant	Cacna1g (MGI:1201678)
chr17	50634842	50691703	17q22	17q21.33	604323	ABCC3, CMOAT2, MRP3, MLP2	ATP-binding cassette, sub-family C, member 3	ABCC3	8714	ENSG00000108846			Abcc3 (MGI:1923658)
chr17	50719543	50756212	17q21.3	17q21.33	609434	LUC7L3, CROP, LUC7A	Luc7, S. cerevisiae, homolog of, 3	LUC7L3	51747	ENSG00000108848			Luc7l3 (MGI:1914934)
chr17	50834649	50842352	17q21.3	17q21.33	610895	WFIKKN2, WFIKKNRP	WAP, fillistatin, immunoglobulin, Kunitz, and NTR domains-containing protein 2	WFIKKN2	124857	ENSG00000173714			Wfikkn2 (MGI:2669209)
chr17	50862222	50867977	17q21	17q21.33	605523	TOB1, TOB	Transducer of ERBB2, 1	TOB1	10140	ENSG00000141232			Tob1 (MGI:1349721)
chr17	50962173	51120864	17q21.33	17q21.33	605430	SPAG9, SYD1, KIAA0516	Sperm-associated antigen 9	SPAG9	9043	ENSG00000008294			Spag9 (MGI:1918084)
chr17	51153558	51162088	17q21.3	17q21.33	156490	NME1, NM23	Non-metastatic cells 1, protein (NM23A) expressed in	NME1	4830	ENSG00000239672		Neuroblastoma, 256700 (3), Autosomal dominant, Isolated cases	Nme1 (MGI:97355)
chr17	51165434	51171743	17q21.3	17q21.33	156491	NME2	Non-metastatic cells 2, protein (NM23) expressed in	NME2	4831	ENSG00000243678			Nme2 (MGI:97356)
chr17	51260535	51297932	17q21.33	17q21.33	612816	UTP18	UTP18, S. cerevisiae, homolog of	UTP18	51096	ENSG00000011260			Utp18 (MGI:1923402)
chr17	51630312	52160016	17q21.33-q22	17q21-q22	604642	CA10, CARPX	Carbonic anhydrase X	CA10	56934	ENSG00000154975			Car10 (MGI:1919855)
chr17	52100000	59500000	17q22		151441	BCL5	B-cell CLL/lymphoma-5	BCL5	603				
chr17	53822877	53825211	17q22	17q22	615142	KIF2B	Kinesin family member 2B	KIF2B	84643	ENSG00000141200			Kif2b (MGI:1920720)
chr17	54900690	54961966	17q22	17q22	604701	TOM1L1	TOM1-like 1	TOM1L1	10040	ENSG00000141198			Tom1l1 (MGI:1919193)
chr17	54951897	54968784	17q22	17q22	603648	COX11	Cytochrome c oxidase, subunit 11	COX11	1353	ENSG00000166260	pseudogene on 6p23-p22		Cox11 (MGI:1917052)
chr17	54968727	55164284	17q22	17q22	610415	STXBP4, SYNIP	Syntaxin-binding protein 4	STXBP4	252983	ENSG00000166263			Stxbp4 (MGI:1342296)
chr17	55264959	55325175	17q22	17q22	142385	HLF	Hepatic leukemia factor	HLF	3131	ENSG00000108924			Hlf (MGI:96108)
chr17	55392612	55421979	17q22	17q22	604467	MMD, MMD1, PAQR11	Monocyte-to-macrophage differentiation-associated protein	MMD	23531	ENSG00000108960			Mmd (MGI:1914718)
chr17	55719626	55732120	17q22	17q22	616334	TMEM100	Transmembrane protein 100	TMEM100	55273	ENSG00000166292			Tmem100 (MGI:1915138)
chr17	55750978	55845000	17q21-q22	17q22	606055	PCTP	Phosphatidylcholine transfer protein	PCTP	58488	ENSG00000141179			Pctp (MGI:107375)
chr17	56593698	56595589	17q22	17q22	602991	NOG, SYM1, SYNS1A	Noggin, mouse, homolog of	NOG	9241	ENSG00000183691		Brachydactyly, type B2, 611377 (3), Autosomal dominant; Multiple synostoses syndrome 1, 186500 (3), Autosomal dominant; Stapes ankylosis with broad thumbs and toes, 184460 (3), Autosomal dominant; Symphalangism, proximal, 1A, 185800 (3), Autosomal dominant; Tarsal-carpal coalition syndrome, 186570 (3), Autosomal dominant	Nog (MGI:104327)
chr17	56834098	56869566	17q22	17q22	601440	DGKE, NPHS7, AHUS7	Diacylglycerol kinase, epsilon, 64-kD	DGKE	8526	ENSG00000153933		{Hemolytic uremic syndrome, atypical, susceptibility to, 7}, 615008 (3), Autosomal recessive; Nephrotic syndrome, type 7, 615008 (3), Autosomal recessive	Dgke (MGI:1889276)
chr17	56887908	56914047	17q23.1	17q22	600453	TRIM25, ZNF147, EFP	Tripartite motif-containing 25	TRIM25	7706	ENSG00000121060	300kb from MPO		Trim25 (MGI:102749)
chr17	56938198	56961049	17q22-q23	17q22	600272	COIL, CLN80	Coilin p80	COIL	8161	ENSG00000121058			Coil (MGI:104842)
chr17	57085191	57121348	Chr.17	17q22	602449	AKAP1, AKAP149, SAKAP84	A-kinase anchor protein 1, 149kD	AKAP1	8165	ENSG00000121057			Akap1 (MGI:104729)
chr17	57255850	57684688	17q22	17q22	607897	MSI2	Musashi, Drosophila, homolog of, 2	MSI2	124540	ENSG00000153944			Msi2 (MGI:1923876)
chr17	57838925	57850071	17q22-q23	17q22	611985	MRPS23	Mitochondrial ribosomal protein S23	MRPS23	51649	ENSG00000181610			Mrps23 (MGI:1928138)
chr17	57971546	57988263	17q22	17q22	606747	VEZF1, ZNF161	Vascular endothelial zinc finger 1	VEZF1	7716	ENSG00000136451			Vezf1 (MGI:1313291)
chr17	58000918	58007345	17q21.3-q22	17q22	600812	SRSF1, SFRS1, ASF, SF2, SRp30a	Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)	SRSF1	6426	ENSG00000136450			Srsf1 (MGI:98283)
chr17	58083418	58090256	17q23.2	17q22	608942	DYNLL2, DLC2	Dynein, light chain, LC8-type 2	DYNLL2	140735	ENSG00000264364			Dynll2 (MGI:1915347)
chr17	58192723	58205173	17q23.1	17q22	131399	EPX, EPXD	Eosinophil peroxidase	EPX	8288	ENSG00000121053		[Eosinophil peroxidase deficiency], 261500 (3), Autosomal recessive	Epx (MGI:107569)
chr17	58205435	58219604	17q23	17q22	609883	MKS1, MKS, BBS13, JBTS28	MKS1 gene	MKS1	54903	ENSG00000011143	frequent in Finland	Bardet-Biedl syndrome 13, 615990 (3), Autosomal recessive; Joubert syndrome 28, 617121 (3), Autosomal recessive; Meckel syndrome 1, 249000 (3), Autosomal recessive	Mks1 (MGI:3584243)
chr17	58238425	58268517	17q23.1	17q22	150205	LPO	Lactoperoxidase	LPO	4025	ENSG00000167419			Lpo (MGI:1923363)
chr17	58269855	58280934	17q23.1	17q22	606989	MPO	Myeloperoxidase	MPO	4353	ENSG00000005381	translocated in t(15;17)(q22;q11.2)	{Alzheimer disease, susceptibility to}, 104300 (3), Autosomal dominant; {Lung cancer, protection against, in smokers} (3); Myeloperoxidase deficiency, 254600 (3), Autosomal recessive	Mpo (MGI:97137)
chr17	58301226	58329029	17q23.2	17q22	610764	BZRAP1, PRAX1, RIMBP1, KIAA0612	Benzodiazapine receptor (peripheral)-associated protein 1	TSPOAP1	9256	ENSG00000005379			Tspoap1 (MGI:2450877)
chr17	58331231	58331317	17q22	17q22	615657	MIR142	Micro RNA 142	MIR142	406934				
chr17	58352499	58418893	17q23.2	17q22	612482	RNF43, RNF124, SSPCS	Ring finger protein 43	RNF43	54894	ENSG00000108375		Sessile serrated polyposis cancer syndrome, 617108 (3), Autosomal dominant	Rnf43 (MGI:2442609)
chr17	58489531	58518108	Chr.17	17q22	603559	MTMR4	Myotubularin-related protein 4	MTMR4	9110	ENSG00000108389			Mtmr4 (MGI:2180699)
chr17	58520249	58540817	17q23	17q22	603696	SEPT4, PNUTL2	Septin 4	SEPT4	5414	ENSG00000108387			Sept4 (MGI:1270156)
chr17	58556676	58692054	17q22	17q22	605792	TEX14, SPGF23	Testis-expressed gene 14	TEX14	56155	ENSG00000121101	mutation identified in 1 SPGF23 family	?Spermatogenic failure 23, 617707 (3), Autosomal recessive	Tex14 (MGI:1933227)
chr17	58692139	58734341	17q22	17q22	602774	RAD51C, FANCO, BROVCA3	RAD51, S. cerevisiae, homolog of, C	RAD51C	5889	ENSG00000108384		{Breast-ovarian cancer, familial, susceptibility to, 3}, 613399 (3); Fanconi anemia, complementation group O, 613390 (3), Autosomal recessive	Rad51c (MGI:2150020)
chr17	58968009	59106963	17q22-q23	17q22	605073	TRIM37, MUL, KIAA0898	Tripartite motif-containing 37	TRIM37	4591	ENSG00000108395		Mulibrey nanism, 253250 (3), Autosomal recessive	Trim37 (MGI:2153072)
chr17	59109858	59155438	17q22	17q22	616674	SKA2, FAM33A	Spindle- and kinetochore-associated complex, subunit 2	SKA2	348235	ENSG00000182628			Ska2 (MGI:1913390)
chr17	59151135	59151220	17q22	17q22	615675	MIR301A, MIR301	Micro RNA 301A	MIR301A	407027				
chr17	59155354	59206708	17q22	17q22	615920	PRR11	Proline-rich protein 11	PRR11	55771	ENSG00000068489			Prr11 (MGI:2444496)
chr17	59210009	59215249	17q22	17q22	613175	C17orf71, SMG8	Chromosome 17 open reading frame 71	SMG8	55181	ENSG00000167447			Smg8 (MGI:1921383)
chr17	59220466	59275969	17q23.2	17q22	616317	GDPD1, GDE4	Glycerophosphodiester phosphodiesterase domain-containing protein 1	GDPD1	284161	ENSG00000153982			Gdpd1 (MGI:1913819)
chr17	59331691	59401733	17q23.2	17q22	609723	YPEL2	Yippee-like 2	YPEL2	388403	ENSG00000175155			Ypel2 (MGI:1925114)
chr17	59500000	64600000	17q23		609656	BSZQTL	Bone size quantitative trait locus 1		100188793			{Bone size QTL}, 609656 (2)	
chr17	59500000	63100000	17q23.1-q23.2		613355	DEL17q23.1q23.2, C17DELq23.1q23.2	Chromosome 17q23.1-q23.2 deletion syndrome					Chromosome 17q23.1-q23.2 deletion syndrome, 613355 (4), Isolated cases	
chr17	59500000	63100000	17q23.1-q23.2		613618	DUP17q23.1q23.2, C17DUPq23.1q23.2	Chromosome 17q23.1-q23.2 duplication syndrome				2.2 Mb contiguous gene duplication syndrome	Chromosome 17q23.1-q23.2 duplication syndrome, 613618 (4), Autosomal dominant	
chr17	59500000	83257441	17q23-qter		170200	PEPE	Peptidase E	PEPE	5185				
chr17	59565524	59608351	17q23.3	17q23.1	607570	DHX40, DDX40	DEAH (Asp-Glu-Ala-His) box polypeptide 40	DHX40	79665	ENSG00000108406			Dhx40 (MGI:1914737)
chr17	59619688	59696955	17q23	17q23.1	118955	CLTC, MRD56	Clathrin, heavy polypeptide (Hc)	CLTC	1213	ENSG00000141367	fusion gene with TFE3 in renal adenocarcinoma	Mental retardation, autosomal dominant 56, 617854 (3)	Cltc (MGI:2388633)
chr17	59697305	59707625	17q23.1	17q23.1	608625	PTRH2, BIT1, IMNEPD	Peptidyl-tRNA hydrolase 2	PTRH2	51651	ENSG00000141378		Infantile-onset multisystem neurologic, endocrine, and pancreatic disease, 616263 (3), Autosomal recessive	Ptrh2 (MGI:2444848)
chr17	59707464	59842254	17q23.1	17q23.1	611753	VMP1, TMEM49, EPG3	Vacuole membrane protein 1	VMP1	81671	ENSG00000062716			Vmp1 (MGI:1923159)
chr17	59841265	59841336	17q23.1	17q23.1	611020	MIR21, MIRN21	Micro RNA 21	MIR21	406991				
chr17	59859466	59892947	Chr.17	17q23.1	607344	TUBD1, TUBD	Tubulin, delta-1	TUBD1	51174	ENSG00000108423			Tubd1 (MGI:1891826)
chr17	59893045	59950425	17q23.1	17q23.1	608938	RPS6KB1, S6K1	Ribosomal protein S6 kinase, 70kD	RPS6KB1	6198	ENSG00000108443			Rps6kb1 (MGI:1270849)
chr17	59952361	59964755	17q23.1	17q23.1	615172	RNFT1	RING finger protein, transmembrane 1	RNFT1	51136	ENSG00000189050			Rnft1 (MGI:1924142)
chr17	60083565	60088466	17q23	17q23.1	615772	LNCDC, LOC615638	Long noncoding RNA, dendritic cell	WFDC21P	645638				
chr17	60149935	60179020	17q23	17q23.1	114760	CA4, RP17	Carbonic anhydrase IV	CA4	762	ENSG00000167434		Retinitis pigmentosa 17, 600852 (3), Autosomal dominant	Car4 (MGI:1096574)
chr17	60177230	60422469	17q22	17q23.1-q23.2	607740	USP32, USP10	Ubiquitin-specific protease 32	USP32	84669	ENSG00000170832			Usp32 (MGI:2144475)
chr17	60200000	76800000	17q23.2-q25.1		612967	BMIQ15	Body mass index quantitative trait locus 15		100302719		associated with rs228883 and rs1005651	[Body mass index QTL 15], 612967 (2)	
chr17	60443148	60526239	17q22-q23	17q23.2	605324	APPBP2, PAT1	Amyloid beta precursor protein-binding protein 2	APPBP2	10513	ENSG00000062725			Appbp2 (MGI:1914134)
chr17	60600182	60666279	17q22-q23	17q23.2	605100	PPM1D, WIP1, IDDGIP	Protein phosphatase, magnesium-dependent, 1, delta isoform	PPM1D	8493	ENSG00000170836	amplified in breast cancer	Breast cancer, somatic, 114480 (3); Intellectual developmental disorder with gastrointestinal difficulties and high pain threshold, 617450 (3), Autosomal dominant	Ppm1d (MGI:1858214)
chr17	61399895	61409465	17q23	17q23.2	600747	TBX2	T-box 2	TBX2	6909	ENSG00000121068			Tbx2 (MGI:98494)
chr17	61452417	61485109	17q21-q22	17q23.2	601719	TBX4, ICPPS	T-box 4	TBX4	9496	ENSG00000121075		Ischiocoxopodopatellar syndrome, 147891 (3), Autosomal dominant	Tbx4 (MGI:102556)
chr17	61679185	61864119	17q22	17q23.2	605882	BRIP1, BACH1, FANCJ	BRCA1-associated C-terminal helicase 1	BRIP1	83990	ENSG00000136492	?or 17q23	Breast cancer, early-onset, 114480 (3), Autosomal dominant; Fanconi anemia, complementation group J, 609054 (3)	Brip1 (MGI:2442836)
chr17	61865366	61928031	17q23.2	17q23.2	611346	INTS2, INT2, KIAA1287	Integrator complex subunit 2	INTS2	57508	ENSG00000108506			Ints2 (MGI:1917672)
chr17	61942604	62065982	17q22-q23	17q23.2	603808	MED13, THRAP1, TRAP240	Mediator complex subunit 13	MED13	9969	ENSG00000108510			Med13 (MGI:3029632)
chr17	62470907	62615480	17q23.2	17q23.2	608439	TLK2	Tousled-like kinase 2	TLK2	11011	ENSG00000146872			Tlk2 (MGI:1346023)
chr17	62627400	62693600	17q23.2	17q23.2	612264	MRC2, ENDO180, UPARAP, CD280	Mannose receptor, C-type, 2	MRC2	9902	ENSG00000011028			Mrc2 (MGI:107818)
chr17	62701313	62808380	17q23.2	17q23.2	613337	MARCH10	Membrane-associated RING-CH finger protein 10	MARCH10	162333	ENSG00000173838			March10 (MGI:2443469)
chr17	62966522	63427705	17q23.3	17q23.2-q23.3	615047	TANC2, KIAA1636	Tetratricopeptide repeat-, ankyrin repeat-, and coiled-coil-containing protein 2	TANC2	26115	ENSG00000170921			Tanc2 (MGI:2444121)
chr17	63432302	63446360	17q11-qter	17q23.3	600019	CYB561	Cytochrome b-561	CYB561	1534	ENSG00000008283			Cyb561 (MGI:103253)
chr17	63477060	63498379	17q23	17q23.3	106180	ACE, DCP1, ACE1, MVCD3, ICH	Angiotensin I converting enzyme (dipeptidyl carboxypeptidase-1)	ACE	1636	ENSG00000159640		[Angiotensin I-converting enzyme, benign serum increase] (3); {Microvascular complications of diabetes 3}, 612624 (3); {Myocardial infarction, susceptibility to} (3); Renal tubular dysgenesis, 267430 (3), Autosomal recessive; {SARS, progression of} (3); {Stroke, hemorrhagic}, 614519 (3)	Ace (MGI:87874)
chr17	63523333	63548976	17q23.3	17q23.3	608168	KCNH6, HERG2	Potassium channel, voltage-gated, subfamily H, member 6	KCNH6	81033	ENSG00000173826			Kcnh6 (MGI:2684139)
chr17	63600871	63608364	17q22-q24.2	17q23.3	612958	TACO1, CCDC44	Translational activator of mitochondrially encoded cytochrome c oxidase subunit I	TACO1	51204	ENSG00000136463		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Taco1 (MGI:1917457)
chr17	63622208	63696309	17q23.3	17q23.3	602539	MAP3K3, MEKK3, MAPKKK3	Mitogen-activated kinase kinase kinase 3	MAP3K3	4215	ENSG00000198909			Map3k3 (MGI:1346874)
chr17	63702831	63741969	17q23.3	17q23.3	608626	STRADA, STRAD, LYK5	STE20-related kinase adaptor alpha	STRADA	92335	ENSG00000266173		Polyhydramnios, megalencephaly, and symptomatic epilepsy, 611087 (3), Autosomal recessive	Strada (MGI:1919399)
chr17	63773855	63819316	17q23.3	17q23.3	613369	DDX42, RHELP	DEAD (Asp-Glu-Ala-Asp) box polypeptide 42	DDX42	11325	ENSG00000198231			Ddx42 (MGI:1919297)
chr17	63827409	63832026	17q24-q25	17q23.3	601681	PSMC5, TRIP1	Proteasome (prosome, macropain) 26S subunit, ATPase, 5	PSMC5	5705	ENSG00000087191			Psmc5 (MGI:105047)
chr17	63832080	63842990	17q23-q24	17q23.3	601736	SMARCD2, BAF60B, SGD2	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily d, member 2	SMARCD2	6603	ENSG00000108604		Specific granule deficiency 2, 617475 (3), Autosomal recessive	Smarcd2 (MGI:1933621)
chr17	63857015	63864378	17q23.3	17q23.3	612756	TCAM1	Testicular cell adhesion molecule 1	TCAM1P	146771				
chr17	63872011	63873728	17q22-q24	17q23.3	118820	CSH2, CSB	Chorionic somatomammotropin B	CSH2	1443	ENSG00000213218			
chr17	63880211	63881941	17q22-q24	17q23.3	139240	GH2, GHV	Growth hormone-2	GH2	2689	ENSG00000136487			
chr17	63894907	63896660	17q22-q24	17q23.3	150200	CSH1, CSA, PL	Chorionic somatomammotropin hormone-1	CSH1	1442	ENSG00000136488		[Placental lactogen deficiency] (1)	
chr17	63909596	63911327	17q22-q24	17q23.3	603515	CSHL1, CSL	Chorionic somatomammotropin hormone-like 1	CSHL1	1444	ENSG00000204414			Gh (MGI:95707)
chr17	63917192	63918851	17q22-q24	17q23.3	139250	GH1, GHN, IGHD1B	Growth hormone-1	GH1	2688	ENSG00000259384	5'-GH1-CSHP1-CSH1-GH2-CSH2-3'	Growth hormone deficiency, isolated, type IA, 262400 (3), Autosomal recessive; Growth hormone deficiency, isolated, type IB, 612781 (3); Growth hormone deficiency, isolated, type II, 173100 (3), Autosomal dominant; Kowarski syndrome, 262650 (3), Autosomal recessive	
chr17	63928735	63932353	17q23	17q23.3	147245	CD79B, IGB, B29, AGM6	CD79B antigen	CD79B	974	ENSG00000007312		Agammaglobulinemia 6, 612692 (3), Autosomal recessive	Cd79b (MGI:96431)
chr17	63938553	63972917	17q23.1-q25.3	17q23.3	603967	SCN4A, HYPP, NAC1A, HOKPP2, CMS16	Sodium channel, voltage-gated, type IV, alpha polypeptide	SCN4A	6329	ENSG00000007314	21.5kb from GH1	Hyperkalemic periodic paralysis, type 2, 170500 (3), Autosomal dominant; Hypokalemic periodic paralysis, type 2, 613345 (3), Autosomal dominant; Myasthenic syndrome, congenital, 16, 614198 (3), Autosomal recessive; Myotonia congenita, atypical, acetazolamide-responsive, 608390 (3), Autosomal dominant; Paramyotonia congenita, 168300 (3), Autosomal dominant	Scn4a (MGI:98250)
chr17	64002594	64020633	17q23-q25	17q23.3	146630	ICAM2	Intercellular adhesion molecule-2	ICAM2	3384	ENSG00000108622			Icam2 (MGI:96394)
chr17	64039141	64132468	17q23.3	17q23.3	604033	ERN1, IRE1, IRE1A	Endoplasmic reticulum-to-nucleus signaling 1	ERN1	2081	ENSG00000178607			Ern1 (MGI:1930134)
chr17	64319414	64413843	17q23	17q23.3	173445	PECAM1	Platelet/endothelial cell adhesion molecule (CD31 antigen)	PECAM1	5175	ENSG00000261371			Pecam1 (MGI:97537)
chr17	64477784	64497065	17q23-q24	17q23.3	604983	POLG2, POLGB, PEOA4	Polymerase, DNA, gamma-2	POLG2	11232	ENSG00000256525		Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal dominant 4, 610131 (3), Autosomal dominant	Polg2 (MGI:1354947)
chr17	64498253	64507037	17q23-q25	17q23.3	180630	DDX5, HLR1, G17P1	DEAD/H box-5 (RNA helicase, 68kD)	DDX5	1655	ENSG00000108654	near BRCA1		Ddx5 (MGI:105037)
chr17	64542281	64662267	17q23.3-q24.1	17q23.3-q24.1	605532	SMURF2	SMAD-specific E3 ubiquitin protein ligase 2	SMURF2	64750	ENSG00000108854			Smurf2 (MGI:1913563)
chr17	64600000	72900000	17q24		115660	CTRCT7, CCA1	Cataract 7	CCA1	878			Cataract 7, 115660 (2), Autosomal dominant	
chr17	64600000	72900000	17q24		616425	SRXY10	46,XY sex reversal 10				deletion of 32.5kb XYSR regulatory region upstream of SOX9	46XY sex reversal 10, 616425 (4), Autosomal dominant	
chr17	64854133	64919490	17q24.1	17q24.1	616557	LRRC37A3	Leucine-rich repeat-containing protein 37A3	LRRC37A3	374819	ENSG00000176809			
chr17	65009288	65056801	17q24.3	17q24.1	604406	GNA13	Guanine nucleotide-binding protein, alpha-13	GNA13	10672	ENSG00000120063			Gna13 (MGI:95768)
chr17	65137337	65227702	17q23-q24	17q24.1	604067	RGS9, PERRS	Regulator of G protein signaling 9	RGS9	8787	ENSG00000108370		Bradyopsia, 608415 (3)	Rgs9 (MGI:1338824)
chr17	65528562	65561621	17q24	17q24.1	604025	AXIN2, ODCRCS	Axis inhibitor 2 (conductin, mouse, homolog of)	AXIN2	8313	ENSG00000168646		Colorectal cancer, somatic, 114500 (3); Oligodontia-colorectal cancer syndrome, 608615 (3), Autosomal dominant	Axin2 (MGI:1270862)
chr17	66200000	72900000	17q24.2-q24.3		135400	HTGH, DEL17q24	Hypertrichosis terminalis, generalized, with or without gingival hyperplasia (chromosome 17q24 microdeletion syndrome)					Hypertrichosis terminalis, generalized, with or without gingival hyperplasia, 135400 (4), Autosomal recessive	
chr17	66212028	66229437	17q23-qter	17q24.2	138700	APOH	Apolipoprotein H (beta-2-glycoprotein I)	APOH	350	ENSG00000091583			Apoh (MGI:88058)
chr17	66302639	66810743	17q22-q23.2	17q24.2	176960	PRKCA, PKCA	Protein kinase C, alpha polypeptide	PRKCA	5578	ENSG00000154229	cen-COL1A1-PKCA-GH1	Pituitary tumor, invasive (3)	Prkca (MGI:97595)
chr17	66877272	66885277	17q24	17q24.2	606405	CACNG5	Calcium channel, voltage-dependent, gamma-5 subunit	CACNG5	27091	ENSG00000075429			Cacng5 (MGI:2157946)
chr17	67044535	67056796	17q24	17q24.2	114209	CACNG1, CACNLG	Calcium channel, voltage-dependent, gamma-1 subunit	CACNG1	786	ENSG00000108878			Cacng1 (MGI:1206582)
chr17	67070437	67245988	17q24.2	17q24.2	606699	HELZ, KIAA0054, HUMORF5	Helicase with zinc finger domain	HELZ	9931	ENSG00000198265			Helz (MGI:1925705)
chr17	67337915	67366626	17q24.2	17q24.2	604450	PSMD12, P55, STISS	Proteasome 26S subunit, non-ATPase, 12	PSMD12	5718	ENSG00000197170		Stankiewicz-Isidor syndrome, 617516 (3), Autosomal dominant	Psmd12 (MGI:1914247)
chr17	67377280	67697262	17q24.2	17q24.2	605134	PITPNC1, RDGBB	Phosphatidylinositol transfer protein, cytoplasmic, 1	PITPNC1	26207	ENSG00000154217			
chr17	67717832	67744207	17q24.2	17q24.2	615366	NOL11	Nucleolar protein 11	NOL11	25926	ENSG00000130935			Nol11 (MGI:1916229)
chr17	67825516	67984377	17q24	17q24.2	601819	BPTF, FALZ, FAC1, NURF301, NEDDFL	Bromodomain PHD finger transcription factor	BPTF	2186	ENSG00000171634		Neurodevelopmental disorder with dysmorphic facies and distal limb anomalies, 617755 (3), Autosomal dominant	Bptf (MGI:2444008)
chr17	68035601	68046858	17q23-q24	17q24.2	600685	KPNA2, RCH1, QIP2	Karyopherin alpha-2	KPNA2	3838	ENSG00000182481			Kpna2 (MGI:103561)
chr17	68205485	68257163	17q24.2	17q24.2	615169	AMZ2	Archaelysin family metallopeptidase 2	AMZ2	51321	ENSG00000196704			
chr17	68259181	68452004	17q24.2	17q24.2	610008	ARSG, KIAA1001	Arylsulfatase G	ARSG	22901	ENSG00000141337			Arsg (MGI:1921258)
chr17	68413622	68551315	17q23-q24	17q24.2	188830	PRKAR1A, TSE1, CNC1, CAR, PPNAD1, ACRDYS1	Protein kinase, cAMP-dependent, regulatory, type I, alpha	PRKAR1A	5573	ENSG00000108946	fused with RET to form PTC2	Acrodysostosis 1, with or without hormone resistance, 101800 (3), Autosomal dominant; Adrenocortical tumor, somatic (3); Carney complex, type 1, 160980 (3), Autosomal dominant; Myxoma, intracardiac, 255960 (3), Autosomal dominant; Pigmented nodular adrenocortical disease, primary, 1, 610489 (3), Autosomal dominant	Prkar1a (MGI:104878)
chr17	68530275	68600953	17q24.2	17q24.2	611062	FAM20A, AIGFS, AI1G	Family with sequence similarity 20, member A	FAM20A	54757	ENSG00000108950		Amelogenesis imperfecta, type IG (enamel-renal syndrome), 204690 (3), Autosomal recessive	Fam20a (MGI:2388266)
chr17	68867284	68955425	17q24.2	17q24.2	612505	ABCA8, KIAA0822	ATP-binding cassette, subfamily A, member 8	ABCA8	10351	ENSG00000141338			Abca8b (MGI:1351668)
chr17	68974631	69078977	17q24.2	17q24.2	612507	ABCA9	ATP-binding cassette, subfamily A, member 9	ABCA9	10350	ENSG00000154258			Abca9 (MGI:2386796)
chr17	69062043	69141926	17q24.2	17q24.2-q24.3	612504	ABCA6	ATP-binding cassette, subfamily A, member 6	ABCA6	23460	ENSG00000154262			Abca6 (MGI:1923434)
chr17	69100000	76800000	17q24.3-q25.1		261800	PRBNS	Pierre Robin syndrome		100301572		between D17S795 and D17S929	Pierre Robin syndrome, 261800 (2), Autosomal recessive	
chr17	69100000	76800000	17q24.3-q25.1		278850	SRXX2, DUP17q24.3	46XX sex reversal 2				duplication or triplication of 68kb XXSR regulatory region upstream of SOX9	46XX sex reversal 2, 278850 (4), Autosomal dominant	
chr17	69100000	72900000	17q24.3		614834	TTPP3	Thyrotoxic periodic paralysis, susceptibility to, 3		112272595		associated with rs312691	{Thyrotoxic periodic paralysis, susceptibility to, 3}, 614834 (2)	
chr17	69148006	69244814	17q24.2	17q24.3	612508	ABCA10	ATP-binding cassette, subfamily A, member 10	ABCA10	10349	ENSG00000154263			
chr17	69244434	69327181	17q24.2	17q24.3	612503	ABCA5, KIAA1888	ATP-binding cassette, subfamily A, member 5	ABCA5	23461	ENSG00000154265			Abca5 (MGI:2386607)
chr17	69414696	69553860	17q24.3	17q24.3	601254	MAP2K6, PRKMK6, MKK6, MEK6, MAPKK6	Mitogen-activated protein kinase kinase 6	MAP2K6	5608	ENSG00000108984			Map2k6 (MGI:1346870)
chr17	70075224	70135607	17q25	17q24.3	605722	KCNJ16, KIR5.1	Potassium channel, inwardly rectifying, subfamily J, member 16	KCNJ16	3773	ENSG00000153822			Kcnj16 (MGI:1314842)
chr17	70169534	70180043	17q23.1-q24.2	17q24.3	600681	KCNJ2, HHIRK1, KIR2.1, IRK1, LQT7, SQT3, ATFB9	Potassium channel, inwardly rectifying, subfamily J, member 2	KCNJ2	3759	ENSG00000123700		Andersen syndrome, 170390 (3), Autosomal dominant; Atrial fibrillation, familial, 9, 613980 (3), Autosomal dominant; Short QT syndrome 3, 609622 (3)	Kcnj2 (MGI:104744)
chr17	72121019	72126419	17q24.3-q25.1	17q24.3	608160	SOX9, CMD1, SRA1	SRY (sex-determining region Y)-box 9	SOX9	6662	ENSG00000125398		Acampomelic campomelic dysplasia, 114290 (3), Autosomal dominant; Campomelic dysplasia, 114290 (3), Autosomal dominant; Campomelic dysplasia with autosomal sex reversal, 114290 (3), Autosomal dominant	Sox9 (MGI:98371)
chr17	72403321	72592803	17q24.3	17q24.3	617079	LINC00673, HILNC75, SLNCR, LUCAIR1	Long intergenic noncoding RNA 673	LINC00673	100499467				
chr17	72645945	73092713	17q24.3-q25.1	17q24.3-q25.1	616508	SLC39A11, ZIP11, C17orf26	Solute carrier family 39 (zinc transporter), member 11	SLC39A11	201266	ENSG00000133195			Slc39a11 (MGI:1917056)
chr17	72900000	83257441	17q25		602197	CDR3	Cerebellar degeneration-related autoantigen-3		8163				
chr17	72900000	83257441	17q25		614163	DSPS	Delayed sleep phase syndrome, susceptibility to				associated with rs28936679 in AANAT	{Delayed sleep phase syndrome, susceptibility to}, 614163 (2), Autosomal dominant	
chr17	72900000	83257441	17q25		603411	EPR1	Effector cell protease receptor 1						
chr17	72900000	83257441	17q25.1-q25.3		614149	NDNC9	Nail disorder, nonsyndromic congenital, 9 (anonychia-onycholysis)		100682325		max lod at D17S1301	Nail disorder, nonsyndromic congenital, 9, 614149 (2), Autosomal recessive	
chr17	73165020	73171954	17q24	17q25.1	182452	SSTR2	Somatostatin receptor-2	SSTR2	6752	ENSG00000180616			Sstr2 (MGI:98328)
chr17	73193033	73208506	17q25.1	17q25.1	606973	COG1, LDLB, KIAA1381, CDG2G	Component of oligomeric golgi complex 1	COG1	9382	ENSG00000166685		Congenital disorder of glycosylation, type IIg, 611209 (3)	Cog1 (MGI:1333873)
chr17	73283623	73312003	17q24-q25	17q25.1	605468	CDC42EP4, BORG4	CDC42 effector protein 4 (binder of Rho GTPases 4)	CDC42EP4	23580	ENSG00000179604			Cdc42ep4 (MGI:1929760)
chr17	73334383	73644480	17q25.1	17q25.1	607217	SDK2, KIAA1514	Sidekick, Drosophila, homolog of, 2	SDK2	54549	ENSG00000069188			Sdk2 (MGI:2443847)
chr17	74203655	74209879	17q	17q25.1	604182	RPL38	Ribosomal protein L38	RPL38	6169	ENSG00000172809			Rpl38 (MGI:1914921)
chr17	74213556	74262019	17q25.1	17q25.1	608855	TTYH2	Tweety, Drosophila, homolog of, 2	TTYH2	94015	ENSG00000141540			Ttyh2 (MGI:2157091)
chr17	74274209	74314883	17q25	17q25.1	605483	DNAI2, CILD9	Dynein, axonemal, intermediate chain 2	DNAI2	64446	ENSG00000171595		Ciliary dyskinesia, primary, 9, with or without situs inversus, 612444 (3)	Dnaic2 (MGI:2685574)
chr17	74367505	74372599	17q25.1	17q25.1	609046	GPR142, PGR2	G protein-coupled receptor 142	GPR142	350383	ENSG00000257008			Gpr142 (MGI:2668437)
chr17	74431349	74451657	17q25.1-q25.3	17q25.1	605949	GPRC5C, RAIG3	G protein-coupled receptor, family C, group 5, member C	GPRC5C	55890	ENSG00000170412			Gprc5c (MGI:1917605)
chr17	74466372	74484797	17q24	17q25.1	606790	CMRF35H, CMRF35H9	CMRF35H antigen	CD300A	11314	ENSG00000167851			Cd300a (MGI:2443411)
chr17	74521173	74531473	17q25.1	17q25.1	610705	CD300LB, TREM5, IREM3	CD300 antigen-like family, member B	CD300LB	124599	ENSG00000178789			Cd300lb (MGI:2685099)
chr17	74534358	74546170	17q22-q24	17q25.1	606786	CMRF35, CMRF35A	CMRF35 antigen	CD300C	10871	ENSG00000167850			Cd300c2,Cd300c (MGI:2153249,MGI:3032626)
chr17	74557228	74567511	17q25.1	17q25.1	616560	CD300H	CD300H antigen		100130520	ENSG00000284690			
chr17	74579364	74592282	17q25.1	17q25.1	616301	CD300LD, CD300D	CD300 antigen-like family, member D	CD300LD	100131439	ENSG00000204345			Cd300ld,Cd300ld3,Cd300ld4,Cd300ld5 (MGI:3702661,MGI:2687214,MGI:2442358,MGI:3702658)
chr17	74609882	74623957	17q25.1	17q25.1	609801	CD300E, CD300LE, IREM2, CLM2	CD300E antigen	CD300E	342510	ENSG00000186407			Cd300e (MGI:2387602)
chr17	74671116	74747334	17q25.1	17q25.1	609956	RAB37	Pas-associated protein RAB37	RAB37	326624	ENSG00000172794			Rab37 (MGI:1929945)
chr17	74694307	74712999	17q25.1	17q25.1	609807	CD300LF, IGSF13, IREM1, CLM1	CD300 antigen-like family, member F	CD300LF	146722	ENSG00000186074			Cd300lf (MGI:2442359)
chr17	74748611	74769359	17q25.1	17q25.1	604990	SLC9A3R1, EBP50, NHERF1, NPHLOP2	Solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulatory factor 1	SLC9A3R1	9368	ENSG00000109062		Nephrolithiasis/osteoporosis, hypophosphatemic, 2, 612287 (3), Autosomal dominant	Slc9a3r1 (MGI:1349482)
chr17	74842020	74860842	17q25	17q25.1	138254	GRIN2C, NMDAR2C	Glutamate receptor, ionotropic, N-methyl D-aspartate 2C	GRIN2C	2905	ENSG00000161509			Grin2c (MGI:95822)
chr17	74862496	74873030	17q24-q25	17q25.1	103270	FDXR, ADXR, ANOA	Ferredoxin reductase (adrenodoxin reductase)	FDXR	2232	ENSG00000161513		Auditory neuropathy and optic atrophy, 617717 (3), Autosomal recessive	Fdxr (MGI:104724)
chr17	74916082	74923262	17q24-q25	17q25.1	607696	SANS, USH1G	Scaffold protein containing ankyrin repeats and SAM domain	USH1G	124590	ENSG00000182040	?allelic to DFNA20	Usher syndrome, type 1G, 606943 (3), Autosomal recessive	Ush1g (MGI:2450757)
chr17	74922954	74933912	17q25.3	17q25.1	607827	OTOP2	Otopetrin 2	OTOP2	92736	ENSG00000183034			Otop2 (MGI:2388365)
chr17	74935801	74949992	17q25.3	17q25.1	607828	OTOP3	Otopetrin 3	OTOP3	347741	ENSG00000182938			Otop3 (MGI:1916852)
chr17	74950741	74972804	17q25.1	17q25.1	605752	HID1, 17orf28, DMC1	HID1 domain-containing protein 1	HID1	283987	ENSG00000167861			Hid1 (MGI:2445087)
chr17	75012663	75021260	17q25.1	17q25.1	603000	ICT1, DS1	Immature colon carcinoma transcript 1	MRPL58	3396	ENSG00000167862			Mrpl58 (MGI:1915822)
chr17	75032566	75065888	17q25.1	17q25.1	613422	KCTD2, KIAA0176	Potassium channel tetramerization domain-containing 2	KCTD2	23510	ENSG00000180901			Kctd2 (MGI:1917632)
chr17	75130224	75131964	17q23-q25	17q25.1	191720	NT5C, UMPH2, DNT1	5', 3' nucleotidase, cytosolic	NT5C	30833	ENSG00000125458			Nt5c (MGI:1354954)
chr17	75205435	75235758	17q25	17q25.1	170285	NUP85, PCNT1, PCNT	Nucleoporin 85kD	NUP85	79902	ENSG00000125450			Nup85 (MGI:3046173)
chr17	75261667	75266375	17q23-q25	17q25.1	611974	MRPS7, COXPD34	Mitochondrial ribosomal protein S7	MRPS7	51081	ENSG00000125445	mutation identified in 1 COXPD34 family	?Combined oxidative phosphorylation deficiency 34, 617872 (3), Autosomal recessive	Mrps7 (MGI:1354367)
chr17	75225463	75262392	Chr.17	17q25.1	606006	GGA3, KIAA0154	Golgi associated, gamma adaptin ear containing, ARF binding protein 3	GGA3	23163	ENSG00000125447			Gga3 (MGI:2384159)
chr17	75266227	75271291	17q25.1	17q25.1	612072	MIF4GD, SLIP1	MIF4G domain-containing protein	MIF4GD	57409	ENSG00000125457			Mif4gd (MGI:1916924)
chr17	75272979	75289957	17q25.3	17q25.1	606521	SLC25A19, DNC, MUP1, MCPHA, THMD3, THMD4	Solute carrier family 25 (mitochondrial deoxynucleotide carrier), member 19	SLC25A19	60386	ENSG00000125454		Microcephaly, Amish type, 607196 (3), Autosomal recessive; Thiamine metabolism dysfunction syndrome 4 (progressive polyneuropathy type), 613710 (3), Autosomal recessive	Slc25a19 (MGI:1914533)
chr17	75318075	75405708	17q24-q25	17q25.1	108355	GRB2	Growth factor receptor-bound protein 2	GRB2	2885	ENSG00000177885			Grb2 (MGI:95805)
chr17	75500259	75515582	17q25.1	17q25.1	612185	CASKIN2, KIAA1139	CASK-interacting protein 2	CASKIN2	57513	ENSG00000177303			Caskin2 (MGI:2157062)
chr17	75516507	75524738	17q25.1	17q25.1	608755	TSEN54, SEN54, PCH2A, PCH4, PCH5	tRNA splicing endonuclease 54, S. cerevisiae, homolog of	TSEN54	283989	ENSG00000182173	mutation identified in 1 PCH5 patient	Pontocerebellar hypoplasia type 2A, 277470 (3), Autosomal recessive; Pontocerebellar hypoplasia type 4, 225753 (3), Autosomal recessive; ?Pontocerebellar hypoplasia type 5, 610204 (3), Autosomal recessive	Tsen54 (MGI:1923515)
chr17	75626844	75667201	17q25	17q25.1	603781	RECQL5, RECQ5	DNA helicase, RecQ-like 5	RECQL5	9400	ENSG00000108469			Recql5 (MGI:2156841)
chr17	75667115	75708061	17q25.1	17q25.1	610218	SAP30BP, HTRP, HCNGP, HTRG	SAP30-binding protein	SAP30BP	29115	ENSG00000161526			Sap30bp (MGI:1927479)
chr17	75721327	75757818	17q11-qter	17q25.1	147557	ITGB4	Integrin, beta-4	ITGB4	3691	ENSG00000132470		Epidermolysis bullosa of hands and feet, 131800 (3), Autosomal dominant; Epidermolysis bullosa, junctional, non-Herlitz type, 226650 (3), Autosomal recessive; Epidermolysis bullosa, junctional, with pyloric atresia, 226730 (3), Autosomal recessive	Itgb4 (MGI:96613)
chr17	75757936	75765198	17q24	17q25.1	604313	GALK1	Galactokinase-1	GALK1	2584	ENSG00000108479		Galactokinase deficiency with cataracts, 230200 (3), Autosomal recessive	Galk1 (MGI:95730)
chr17	75776433	75779934	17q25	17q25.1	601058	H3F3B	H3 histone, family 3B (H3.3B)	H3F3B	3021	ENSG00000132475			H3f3b,H3f3a (MGI:1101768,MGI:1097686)
chr17	75784770	75825804	17q25.1	17q25.1	616375	UNK, UNKEMPT, ZC3H5, KIAA1753	Unkempt family zinc finger protein	UNK	85451	ENSG00000132478			Unk (MGI:2442456)
chr17	75827224	75844716	17q25.1	17q25.1	608897	UNC13D, MUNC13-4, HPLH3, HLH3, FHL3	UNC13, C. elegans, homolog of, D	UNC13D	201294	ENSG00000092929		Hemophagocytic lymphohistiocytosis, familial, 3, 608898 (3)	Unc13d (MGI:1917700)
chr17	75845698	75856435	17q25	17q25.1	606962	WBP2, DFNB107	WW domain-binding protein 2	WBP2	23558	ENSG00000132471		Deafness, autosomal recessive 107, 617639 (3), Autosomal recessive	Wbp2 (MGI:104709)
chr17	75874163	75878598	17q24-q25	17q25.1	611041	TRIM47, GOA	Tripartite motif-containing protein 47	TRIM47	91107	ENSG00000132481			Trim47 (MGI:1917374)
chr17	75898642	75905099	17q23-q25	17q25.1	611844	MRPL38	Mitochondrial ribosomal protein L38	MRPL38	64978	ENSG00000204316			Mrpl38 (MGI:1926269)
chr17	75909573	75938231	17q25.1	17q25.1	616807	FGF1, ALB	FAS-binding factor 1	FBF1	85302	ENSG00000188878			Fbf1 (MGI:1922033)
chr17	75941506	75979433	17q25.1	17q25.1	609751	ACOX1, ACOX, SCOX	Acyl-Coenzyme A oxidase 1, palmitoyl	ACOX1	51	ENSG00000161533		Peroxisomal acyl-CoA oxidase deficiency, 264470 (3), Autosomal recessive	Acox1 (MGI:1330812)
chr17	75979216	76000585	17q25.1	17q25.1	613130	TEN1, C17orf106	TEN1, CST complex subunit	TEN1	100134934	ENSG00000257949			Ten1 (MGI:1916785)
chr17	76000905	76005998	17q22-qter	17q25.1	123828	CDK3	Cyclin-dependent kinase 3	CDK3	1018	ENSG00000250506	distal to BRCA1		
chr17	76006844	76027451	17q25	17q25.1	601590	EVPL	Envoplakin	EVPL	2125	ENSG00000167880			Evpl (MGI:107507)
chr17	76038774	76072525	17q25.1	17q25.1	604858	SRP68	Signal recognition particle, 68kD	SRP68	6730	ENSG00000167881			Srp68 (MGI:1917447)
chr17	76070823	76077540	17q25.3	17q25.1	603691	GALR2, GALNR2	Galanin receptor 2	GALR2	8811	ENSG00000182687			Galr2 (MGI:1337018)
chr17	76079181	76082803	17q25.3	17q25.1	610935	LGICZ1, ZAC, L2	Ligand-gated ion channel, zinc-activated, 1	ZACN	353174	ENSG00000186919			
chr17	76080992	76103786	17q25.1	17q25.1	608163	EXOC1, EX070, KIAA1067	Exocyst complex component 7	EXOC7	23265	ENSG00000182473			Exoc7 (MGI:1859270)
chr17	76136332	76141298	17q22-q25	17q25.1	602291	FOXJ1, FKHL13, HFH4	Forkhead box J1	FOXJ1	2302	ENSG00000129654			Foxj1 (MGI:1347474)
chr17	76310735	76354201	17q24-q25	17q25.1	601249	PRPSAP1	Phosphoribosyl pyrophosphate synthetase-associated protein-1	PRPSAP1	5635	ENSG00000161542			Prpsap1 (MGI:1915013)
chr17	76382976	76387859	17q25.2	17q25.1	603730	SPHK1	Sphingosine kinase	SPHK1	8877	ENSG00000176170			Sphk1 (MGI:1316649)
chr17	76389457	76453233	17q25.1	17q25.1	617649	UBE2O, KIAA1734	Ubiquitin-conjugating enzyme E2O	UBE2O	63893	ENSG00000175931			Ube2o (MGI:2444266)
chr17	76453350	76470796	17q25	17q25.1	600950	AANAT, SNAT	Arylalkylamine N-acetyltransferase	AANAT	15	ENSG00000129673			Aanat (MGI:1328365)
chr17	76470892	76501439	17p25.1	17q25.1	614404	RHBDF2, IRHOM2, TOC	Rhomboid 5, Drosophila, homolog of, 2	RHBDF2	79651	ENSG00000129667		Tylosis with esophageal cancer, 148500 (3), Autosomal dominant	Rhbdf2 (MGI:2442473)
chr17	76527347	76557691	17q25	17q25.1	608759	CYGB, HGB, STAP	Cytoglobin	CYGB	114757	ENSG00000161544			Cygb (MGI:2149481)
chr17	76527585	76555338	17q22	17q25.1	610598	PRCD, RP36	PRCD, Dog, homolog of	PRCD	768206	ENSG00000214140		Retinitis pigmentosa 36, 610599 (3)	
chr17	76565378	76586127	17q25.1	17q25.1	610137	ST6GALNAC2, SIAT7B, SAITL1	ST6 alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2	ST6GALNAC2	10610	ENSG00000070731			St6galnac2 (MGI:107553)
chr17	76617768	76643837	17q25.1	17q25.1	610138	ST6GALNAC1, SIAT7A, STYI	ST6 alpha-N-aetyl-neuraminyl-2,3-beta-galactosyl-1, 3-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1	ST6GALNAC1	55808	ENSG00000070526			St6galnac1 (MGI:1341826)
chr17	76712829	76726798	17q25	17q25.1	604914	JMJD6, PSR	Jumonji domain containing 6 (phosphatidylserine receptor)	JMJD6	23210	ENSG00000070495			Jmjd6 (MGI:1858910)
chr17	76725875	76733880	17q25.1	17q25.1	615262	METTL23, C17orf95, MRT44	Methyltransferase-like 23	METTL23	124512	ENSG00000181038		Mental retardation, autosomal recessive 44, 615942 (3), Autosomal recessive	Mettl23 (MGI:1921569)
chr17	76734114	76737410	17q25	17q25.1	600813	SRSF2, SFRS2, SC35	Serine/arginine-rich splicing factor 2	SRSF2	6427	ENSG00000161547			Srsf2 (MGI:98284)
chr17	76868485	76950388	17q25.3	17q25.2	612441	MGAT5B	Alpha-1,6-mannosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase isozyme B	MGAT5B	146664	ENSG00000167889			Mgat5b (MGI:3606200)
chr17	77088642	77217100	17q25.1-q25.2	17q25.2-q25.3	601504	SEC14L	SEC14, S. cerevisiae, like	SEC14L1	6397	ENSG00000129657			Sec14l1 (MGI:1921386)
chr17	77200000	83257441	17q25.3		605805	ATOD4	Dermatitis, atopic, 4				maximum lod at D17S1290	{Dermatitis, atopic, susceptibility to, 4}, 605805 (2)	
chr17	77200000	83257441	17q25.3		612239	IS5	Scoliosis, idiopathic, susceptibility to, 5		100190985		between D17S1806 and 17qter	{Scoliosis, idiopathic, susceptibility to, 5}, 612239 (2)	
chr17	77281409	77500595	17q25	17q25.3	604061	SEPT9, MSF, MSF1, NAPB	Septin 9	SEPT9	10801	ENSG00000184640		Amyotrophy, hereditary neuralgic, 162100 (3), Autosomal dominant; Leukemia, acute myeloid, therapy-related (1); Ovarian carcinoma (1)	Sept9 (MGI:1858222)
chr17	77958852	78108834	17q25.3	17q25.3	610741	TNRC6C, KIAA1582	Trinucleotide repeat-containing gene 6C	TNRC6C	57690	ENSG00000078687			Tnrc6c (MGI:2443265)
chr17	78108774	78132426	17q25	17q25.3	605828	TMC6, EVER1, EV1	Transmembrane channel-like 6	TMC6	11322	ENSG00000141524		Epidermodysplasia verruciformis, 226400 (3), Autosomal recessive	Tmc6 (MGI:1098686)
chr17	78129297	78142967	17q25	17q25.3	605829	TMC8, EVER2, EV2	Transmembrane channel-like 8	TMC8	147138	ENSG00000167895	previously mapped to 2p24-p21	Epidermodysplasia verruciformis, 226400 (3), Autosomal recessive	Tmc8 (MGI:2669037)
chr17	78168544	78172927	17q25	17q25.3	603926	SYNGR2	Synaptogyrin 2	SYNGR2	9144	ENSG00000108639	pseudogene on 15q11; near EV1, EV2, TK1		Syngr2 (MGI:1328324)
chr17	78174078	78187203	17q25.2-q25.3	17q25.3	188300	TK1	Thymidine kinase-1	TK1	7083	ENSG00000167900			Tk1 (MGI:98763)
chr17	78214195	78225634	17q25	17q25.3	603352	API4	Apoptosis inhibitor 4	BIRC5	332	ENSG00000089685			Birc5 (MGI:1203517)
chr17	78356776	78360078	17q25.3	17q25.3	604176	SOCS3, SSI3, CIS3	Suppressor of cytokine signaling 3	SOCS3	9021	ENSG00000184557			Socs3 (MGI:1201791)
chr17	78378617	78424658	17q25.3	17q25.3	614942	PGS1	Phosphatidylglycerophosphate synthase 1	PGS1	9489	ENSG00000087157			Pgs1 (MGI:1921701)
chr17	78423696	78577435	17q25	17q25.3	610063	DNAH17, DNEL2	Dynein, axonemal, heavy chain 17	DNAH17	8632	ENSG00000187775			Dnah17 (MGI:1917176)
chr17	78674046	78782341	17q25	17q25.3	182115	CYTH1, D17S811E, SEC7	Cytohesin 1	CYTH1	9267	ENSG00000108669			Cyth1 (MGI:1334257)
chr17	78787380	78840839	17q25.3	17q25.3	612543	USP36, KIAA1453	Ubiquitin-specific protease 36	USP36	57602	ENSG00000055483			Usp36 (MGI:1919594)
chr17	78852976	78925389	17q25	17q25.3	188825	TIMP2	Tissue inhibitor of metalloproteinase-2	TIMP2	7077	ENSG00000035862			Timp2 (MGI:98753)
chr17	78971252	78979978	17q25	17q25.3	600626	LGALS3BP	Lectin, galactoside-binding, soluble, 3 binding protein (galectin 6 binding protein)	LGALS3BP	3959	ENSG00000108679			Lgals3bp (MGI:99554)
chr17	78991715	79009816	17q25.3	17q25.3	613165	CANT1, SCAN1, DBQD1, EDM7	Calcium-activated nucleotidase 1	CANT1	124583	ENSG00000171302		Desbuquois dysplasia 1, 251450 (3), Autosomal recessive; Epiphyseal dysplasia, multiple, 7, 617719 (3), Autosomal recessive	Cant1 (MGI:1923275)
chr17	79022933	79049787	17q25	17q25.3	610365	C1QTNF1, GIP	C1q- and tumor necrosis factor-related protein 1	C1QTNF1	114897	ENSG00000173918			C1qtnf1 (MGI:1919254)
chr17	79074811	79088602	17q25.3	17q25.3	611898	NAGLUEB, FLJ21865	N-acetylglucosaminidase, endo-beta	ENGASE	64772	ENSG00000167280			Engase (MGI:2443788)
chr17	79089344	79665599	17q25.3	17q25.3	616999	RBFOX3, FOX3, NEUN, HRNBP3	RNA-binding protein FOX1, C. Elegans, homolog of, 3	RBFOX3	146713	ENSG00000167281			
chr17	79730918	79742925	17q25.3	17q25.3	616997	ENPP7	Ectonucleotide pyrophosphatase/phosphodiesterase 7	ENPP7	339221	ENSG00000182156			Enpp7 (MGI:3027917)
chr17	79776253	79787649	17q25	17q25.3	602770	CBX2, M33, SRXY5	Chromobox homolog 2, Drosophila polycomb class	CBX2	84733	ENSG00000173894	mutation identified in 1 SRXY5 patient	?46XY sex reversal 5, 613080 (3), Autosomal recessive	Cbx2 (MGI:88289)
chr17	79794376	79797115	17q25.3	17q25.3	617354	CBX8, PC3	Chromobox homolog 8	CBX8	57332	ENSG00000141570			Cbx8 (MGI:1353589)
chr17	79833155	79839413	17q25.3	17q25.3	603079	CBX4, PC2	Chromobox homolog 4, Drosophila polycomb class	CBX4	8535	ENSG00000141582			Cbx4 (MGI:1195985)
chr17	79932342	80035874	17q25.3	17q25.3	616637	TBC1D16	TBC1 domain family, member 16	TBC1D16	125058	ENSG00000167291			Tbc1d16 (MGI:2652878)
chr17	80036631	80100612	17q25.3	17q25.3	613799	CCDC40, KIAA1640	Coiled-coil domain-containing protein 40	CCDC40	55036	ENSG00000141519		Ciliary dyskinesia, primary, 15, 613808 (3)	Ccdc40 (MGI:2443893)
chr17	80101525	80119881	17q25.2-q25.3	17q25.3	606800	GAA	Glucosidase, acid alpha-	GAA	2548	ENSG00000171298	distal to TK1	Glycogen storage disease II, 232300 (3), Autosomal recessive	Gaa (MGI:95609)
chr17	80135213	80147182	17q25.3	17q25.3	608546	DDX48, EIF4A3, MUK34, NMP265, KIAA0111, RCPS	DEAD/H Box 48	EIF4A3	9775	ENSG00000141543		Robin sequence with cleft mandible and limb anomalies, 268305 (3), Autosomal recessive	Eif4a3 (MGI:1923731)
chr17	80169991	80209330	17q25.3	17q25.3	607211	CARD14, CARMA2, BIMP2, PSORS2, PSS1, PRP	Caspase recruitment domain-containing protein 14	CARD14	79092	ENSG00000141527		Pityriasis rubra pilaris, 173200 (3), Autosomal dominant; Psoriasis 2, 602723 (3), Autosomal dominant	Card14 (MGI:2386258)
chr17	80200667	80220399	17q25.3	17q25.3	605270	SGSH, MPS3A, SFMD	N-sulfoglucosamine sulfohydrolase (sulfamidase)	SGSH	6448	ENSG00000181523		Mucopolysaccharidosis type IIIA (Sanfilippo A), 252900 (3), Autosomal recessive	Sgsh (MGI:1350341)
chr17	80220286	80253508	17q25	17q25.3	610117	SLC26A11	Solute carrier family 26 (sulfate transporter), member 11	SLC26A11	284129	ENSG00000181045			Slc26a11 (MGI:2444589)
chr17	80260819	80398785	17q25	17q25.3	613768	RNF213, ALO17, KIAA1618, MYMY2	Ring finger protein 213	RNF213	57674	ENSG00000173821		{Moyamoya disease 2, susceptibility to}, 607151 (3)	Rnf213 (MGI:1289196)
chr17	80466832	80476603	17q25.1-q25.2	17q25.3	602367	NPTX1, NP1	Pentraxin I, neuronal	NPTX1	4884	ENSG00000171246			Nptx1 (MGI:107811)
chr17	80544824	80966372	17q25.3	17q25.3	607130	RPTOR, RAPTOR, KIAA1303	Regulatory-associated protein of MTOR	RPTOR	57521	ENSG00000141564			Rptor (MGI:1921620)
chr17	80991840	81000132	17q25.3	17q25.3	610901	CHMP6	CHMP family, member 6	CHMP6	79643	ENSG00000176108			Chmp6 (MGI:3583942)
chr17	81035130	81117431	17q25	17q25.3	605475	BAIAP2, IRSP53	BAI1-associated protein 2	BAIAP2	10458	ENSG00000175866			Baiap2 (MGI:2137336)
chr17	81117294	81166071	17q25.3	17q25.3	605276	AATK, AATYK	Apoptosis-associated tyrosine kinase	AATK	9625	ENSG00000181409			Aatk (MGI:1197518)
chr17	81125882	81125948	17q25.3	17q25.3	614059	MIR338, MIRN338	Micro RNA 338	MIR338	442906				
chr17	81189592	81222988	17q25.3	17q25.3	613479	AZI1, ZA1, KIAA1118	5-azacytidine-induced gene 1, mouse, homolog of	CEP131	22994	ENSG00000141577			Cep131 (MGI:107440)
chr17	81244810	81295432	17q25.3	17q25.3	616525	SLC38A10	Solute carrier family 38 (amino acid transporter), member 10	SLC38A10	124565	ENSG00000157637			Slc38a10 (MGI:1919305)
chr17	81395430	81466331	17q25.3	17q25.3	617646	BAHCC1, BAHD2, KIAA1447	BAH domain- and coiled-coil domain-containing protein 1	BAHCC1	57597	ENSG00000266074			Bahcc1 (MGI:2679272)
chr17	81509970	81512865	17q25.3	17q25.3	102560	ACTG1, DFNA20, DFNA26, BRWS2	Actin, gamma-1	ACTG1	71	ENSG00000184009		Baraitser-Winter syndrome 2, 614583 (3), Autosomal dominant; Deafness, autosomal dominant 20/26, 604717 (3), Autosomal dominant	Actg1 (MGI:87906)
chr17	81513018	81537129	17q25	17q25.3	607643	FSCN2, RFSN, RP30	Fascin, sea urchin, homolog of, 2	FSCN2	25794	ENSG00000186765	within 200kb of ACTG1	Retinitis pigmentosa 30, 607921 (3)	Fscn2 (MGI:2443337)
chr17	81539884	81552402	17q25.3	17q25.3	611301	C17orf70, FAAP100	Chromosome 17 open reading frame 70	FAAP100	80233	ENSG00000185504			Faap100 (MGI:1919135)
chr17	81556884	81637152	17qter	17q25.3	606590	NPL4, KIAA1499	Npl4, S. cerevisiae, homolog of	NPLOC4	55666	ENSG00000182446			Nploc4 (MGI:2679787)
chr17	81650458	81663417	17q25	17q25.3	180073	PDE6G, PDEG, RP57	Phosphodiesterase-6G, cGMP-specific, rod, gamma	PDE6G	5148	ENSG00000185527		Retinitis pigmentosa 57, 613582 (3), Autosomal recessive	Pde6g (MGI:97526)
chr17	81666696	81673906	17q25.3	17q25.3	614271	CCDC137	Coiled-coil domain-containing protein 137	CCDC137	339230	ENSG00000185298			Ccdc137 (MGI:1914541)
chr17	81683931	81702120	17q25	17q25.3	604375	HGS, HRS	Human growth factor-regulated tyrosine kinase substrate	HGS	9146	ENSG00000185359			Hgs (MGI:104681)
chr17	81703369	81707525	17q25-qter	17q25.3	602375	MRPL12, RPML12	Ribosomal protein, mitochondrial, L12	MRPL12	6182	ENSG00000262814			Mrpl12 (MGI:1926273)
chr17	81712235	81721015	17q25.3	17q25.3	606794	SLC25A10, DIC	Solute carrier family 25 (mitochondrial carrier), member 10 (dicarboxylate ion carrier)	SLC25A10	1468	ENSG00000183048			Slc25a10 (MGI:1353497)
chr17	81804077	81814012	17q25	17q25.3	138033	GCGR	Glucagon receptor	GCGR	2642	ENSG00000215644		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant	Gcgr (MGI:99572)
chr17	81822360	81833293	17q25.3	17q25.3	616514	FAM195B, MCRIP1	Family with sequence similarity 194, member B	MCRIP1	348262	ENSG00000225663			Mcrip1 (MGI:2384752)
chr17	81843157	81860667	17q25	17q25.3	176790	P4HB, PROHB, CLCRP1	Procollagen-proline, 2-oxoglutarate-4-dioxygenase, beta polypeptide	P4HB	5034	ENSG00000185624		Cole-Carpenter syndrome 1, 112240 (3), Autosomal dominant	P4hb (MGI:97464)
chr17	81867718	81871405	17q25.3	17q25.3	601925	ARHGDIA, GDIA1, NPHS8	Rho GDP dissociation inhibitor (GDI) alpha	ARHGDIA	396	ENSG00000141522		Nephrotic syndrome, type 8, 615244 (3), Autosomal recessive	Arhgdia (MGI:2178103)
chr17	81887834	81891621	17q25.3	17q25.3	604171	ALYREF, THOC4, ALY, BEF	ALY/REF export factor	ALYREF	10189	ENSG00000183684			
chr17	81890789	81900532	17q25.3	17q25.3	614534	ANAPC11, APC11	Anaphase-promoting complex subunit 11	ANAPC11	51529	ENSG00000141552			Anapc11 (MGI:1913406)
chr17	81902108	81902904	17q25.3	17q25.3	607996	NPB, PPL7	Neuropeptide B	NPB	256933	ENSG00000183979			Npb (MGI:2387153)
chr17	81911938	81918181	17q25.3	17q25.3	606212	SIRT7, SIR2L7	Sirtuin 7 (Sir2, S. cerevisiae, homolog of, 7)	SIRT7	51547	ENSG00000187531			Sirt7 (MGI:2385849)
chr17	81918268	81927710	17q25	17q25.3	602020	MAFG	v-maf avian musculoaponeurotic fibrosarcoma oncogene family, protein G	MAFG	4097	ENSG00000197063			Mafg (MGI:96911)
chr17	81932383	81937327	17q25.3	17q25.3	179035	PYCR1, PRO3, ARCL2B, ARCL3B	Pyrroline-5-carboxylate reductase-1	PYCR1	5831	ENSG00000183010		Cutis laxa, autosomal recessive, type IIB, 612940 (3), Autosomal recessive; Cutis laxa, autosomal recessive, type IIIB, 614438 (3)	Pycr1 (MGI:2384795)
chr17	81952506	81961180	17q25.3	17q25.3	609847	NOTUM	Notum, Drosophila, homolog of	NOTUM	147111	ENSG00000185269			Notum (MGI:1924833)
chr17	81977545	82017668	17q25	17q25.3	606236	ASPSCR1, RCC17, ASPL, ASPS	Alveolar soft-part sarcoma chromosome region, candidate 1	ASPSCR1	79058	ENSG00000169696	t(X;17)(p11.2;q25)	Alveolar soft-part sarcoma, 606243 (3)	Aspscr1 (MGI:1916188)
chr17	82018702	82022929	17q25.3	17q25.3	615128	STRA13, CENPX, FAAP10, MHF2, D9	Stimulated by retinoic acid 13	CENPX	201254	ENSG00000169689			Cenpx (MGI:894324)
chr17	82031655	82034203	17q25.3	17q25.3	602050	RAC3	Ras-related C3 botulinum toxin substrate-3 (rho family, small GTP-binding protein Rac3)	RAC3	5881	ENSG00000169750			Rac3 (MGI:2180784)
chr17	82035880	82037696	17q25.3	17q25.3	608347	DCXR, P34H, PNTSU	Dicarbonyl/L-xylulose reductase	DCXR	51181	ENSG00000169738		[Pentosuria], 260800 (3), Autosomal recessive	Dcxr (MGI:1915130)
chr17	82047901	82051773	17q25	17q25.3	602578	RFNG	Radical fringe	RFNG	5986	ENSG00000169733			Rfng (MGI:894275)
chr17	82051464	82058060	17q25.3	17q25.3	601934	GPS1	G protein pathway suppressor 1	GPS1	2873	ENSG00000169727			Gps1 (MGI:2384801)
chr17	82078337	82098302	17q25	17q25.3	600212	FASN	Fatty acid synthase	FASN	2194	ENSG00000169710			Fasn (MGI:95485)
chr17	82239018	82273741	17q25	17q25.3	600864	CSNK1D, ASPS, FASPS2	Casein kinase-1, delta	CSNK1D	1453	ENSG00000141551		Advanced sleep-phase syndrome, familial, 2, 615224 (3), Autosomal dominant	Csnk1d (MGI:1355272)
chr17	82314864	82320828	17q25.2-q25.3	17q25.3	186820	CD7	CD7 antigen (p41)	CD7	924	ENSG00000173762			Cd7 (MGI:88344)
chr17	82321023	82334044	17q25.2-q25.3	17q25.3	602602	SECTM1, K12	Secreted and transmembrane 1	SECTM1	6398	ENSG00000141574			Sectm1a (MGI:2384805)
chr17	82359246	82363775	17q25.3	17q25.3	615647	TEX19	Testis-expressed gene 19	TEX19	400629	ENSG00000182459			Tex19.2 (MGI:1918206)
chr17	82374276	82375585	17q25.3	17q25.3	600896	GPR14, UTR2, UTR	G protein-coupled receptor-14 (urotensin II receptor)	UTS2R	2837	ENSG00000181408			Uts2r (MGI:2183450)
chr17	82519717	82604606	17q25	17q25.3	147685	FOXK2, ILF1	Forkhead box K2 (interleukin enhancer-binding factor 1)	FOXK2	3607	ENSG00000141568			Foxk2 (MGI:1916087)
chr17	82614561	82648534	17q25.3	17q25.3	609226	WDR45B, WIPI3, WDR45L	WD repeat domain 45B	WDR45B	56270	ENSG00000141580			Wdr45b (MGI:1914090)
chr17	82716705	82728016	17q25	17q25.3	611683	FN3KRP	Fructosamine 3-kinase-related protein	FN3KRP	79672	ENSG00000141560			Fn3krp (MGI:2679256)
chr17	82735575	82751196	17q25.3	17q25.3	608425	FN3K	Fructosamine 3-kinase	FN3K	64122	ENSG00000167363			Fn3k (MGI:1926834)
chr17	82752047	82943185	17q25	17q25.3	604649	TBCD, PEBAT	Tubulin-specific chaperone D	TBCD	6904	ENSG00000141556		Encephalopathy, progressive, early-onset, with brain atrophy and thin corpus callosum, 617193 (3), Autosomal recessive	Tbcd (MGI:1919686)
chr17	82829433	82840054	17q25.3	17q25.3	610226	ZNF750, FLJ13841	Zinc finger protein 750	ZNF750	79755	ENSG00000141579		Seborrhea-like dermatitis with psoriasiform elements, 610227 (3)	Zfp750 (MGI:2442210)
chr17	82942148	83051844	17q25.3	17q25.3	615337	B3GNTL1	Beat-1,3-N-acetylglucosaminyltransferase-like 1	B3GNTL1	146712	ENSG00000175711			B3gntl1 (MGI:2441705)
chr17	83079690	83095125	17q25.3	17q25.3	616241	METRNL	Meteorin-like protein	METRNL	284207	ENSG00000176845			Metrnl (MGI:2384806)
chr17	0	83257441	Chr.17		138110	G6PDL	Glucose-6-phosphate dehydrogenase-like						
chr17	0	83257441	Chr.17		610064	ODS1	Opioid dependence, susceptibility to, 1		100188802			{Opioid dependence, susceptibility to, 1}, 610064 (2)	
chr18	0	15400000	18p11.3-p11.2		104000	AA1	Alopecia areata 1		100034700		max lod at D18S967	Alopecia areata 1, 104000 (2), Multifactorial	
chr18	0	18500000	18p		146390	DEL18p, C18DELp	Chromosome 18p deletion syndrome					Chromosome 18p deletion syndrome, 146390 (4), Autosomal dominant	
chr18	0	7200000	18p11.32-p11.31		609647	DFNB46	Deafness, neurosensory, autosomal recessive 46	DFNB46	449488		between D18S59 and D18S391	Deafness, autosomal recessive 46, 609647 (2), Autosomal recessive	
chr18	0	18500000	18p11		607488	DYT15	Dystonia-15, myoclonic	DYT15	317714			Dystonia-15, myoclonic, 607488 (2), Autosomal dominant	
chr18	0	18500000	18p		602124	DYT7	Dystonia-7 (torsion dystonia, adult-onset, focal)	DYT7	1866			Dystonia-7, torsion, 602124 (2), Autosomal dominant	
chr18	0	15400000	18pter-p11.21		131150	ERV1	Oncogene ERV1; endogenous retrovirus-1						
chr18	0	18500000	18p11		612354	IBD21	Inflammatory bowel disease 21		100192312		associated with rs2542151	{Inflammatory bowel disease 21}, 612354 (2), Autosomal dominant	
chr18	0	18500000	18p		125480	MAFD1, BPAD, MD1	Major affective disorder 1	MAFD1	4095		?also 18q	{Major affective disorder 1}, 125480 (2), Autosomal dominant	
chr18	0	7200000	18p11.3		614343	MRT19	Mental retardation, autosomal recessive 19	MRT19	100852395		between rs4606805 and rs1787846	Mental retardation, autosomal recessive 19, 614343 (2), Autosomal recessive	
chr18	0	7200000	18p11.3		612353	POROK6, DSAP4	Porokeratosis 6		100196911		between telomere and D18S391	Porokeratosis 6, multiple types, 612353 (2), Autosomal dominant	
chr18	0	18500000	18p		603206	SCZD8	Schizophrenia susceptibility locus, chromosome 18-related	SCZD8	8806			{Schizophrenia}, 181500 (2), Autosomal dominant	
chr18	0	18500000	18p		614290	TET18P	Tetrasomy 18p					Tetrasomy 18p, 614290 (4)	
chr18	158482	213738	18p	18p11.32	607274	USP14, TGT	Ubiquitin-specific protease 14	USP14	9097	ENSG00000101557			Usp14 (MGI:1928898)
chr18	214347	268058	18p11.32	18p11.32	606930	THOC1, HPR1	THO complex 1 (nuclear matrix protein p84)	THOC1	9984	ENSG00000079134			Thoc1 (MGI:1919668)
chr18	319354	500728	18p11.32	18p11.32	607621	COLEC12, SRCL, CLP1	Collectin 12	COLEC12	81035	ENSG00000158270			Colec12 (MGI:2152907)
chr18	580342	582019	18p11.32	18p11.32	603187	CETN1, CEN1	Centrin-1	CETN1	1068	ENSG00000177143			Cetn1 (MGI:1347086)
chr18	596997	650297	18p11.3	18p11.32	616990	CLUL1	Clusterin-like protein 1	CLUL1	27098	ENSG00000079101			
chr18	657583	673577	18p11.32	18p11.32	188350	TYMS, TS, TMS	Thymidylate synthase	TYMS	7298	ENSG00000176890	<50 kb from YES1		Tyms (MGI:98878)
chr18	670319	712663	18p11.32	18p11.32	607427	ENOSF1, RTS	Enolase superfamily member 1	ENOSF1	55556	ENSG00000132199			
chr18	721591	812845	18p11.3	18p11.32	164880	YES1	Oncogene YES-1	YES1	7525	ENSG00000176105	<50 kb from TYMS		Yes1 (MGI:99147)
chr18	904383	912171	18p11	18p11.32	102980	ADCYAP1	Adenylate cyclase activating polypeptide-1 (pituitary)	ADCYAP1	116	ENSG00000141433			Adcyap1 (MGI:105094)
chr18	2655886	2805016	18p11.32	18p11.32	614982	SMCHD1, KIAA0650, BAMS	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	SMCHD1	23347	ENSG00000101596		Bosma arhinia microphthalmia syndrome, 603457 (3), Autosomal dominant; Fascioscapulohumeral muscular dystrophy 2, digenic, 158901 (3)	Smchd1 (MGI:1921605)
chr18	2900000	7200000	18p11.31		160700	MYP2	Myopia, high grade, autosomal dominant 1	MYP2	4658			Myopia-2, 160700 (2), Autosomal dominant	
chr18	2916993	3013314	18p	18p11.31	605519	LPIN2	Lipin 2	LPIN2	9663	ENSG00000101577		Majeed syndrome, 609628 (3)	Lpin2 (MGI:1891341)
chr18	3066806	3220107	18p11.31	18p11.31	603508	MYOM1, SKELEMIN	Myomesin 1	MYOM1	8736	ENSG00000101605			Myom1 (MGI:1341430)
chr18	3262112	3278283	18p11.31	18p11.31	609211	MYL12B, MRLC2	Myosin, light chain 12B, regulatory	MYL12B	103910	ENSG00000118680			Myl12a (MGI:1914518)
chr18	3411926	3458411	18p11.3	18p11.31	602630	TGIF1, HPE4	TG-interacting factor 1	TGIF1	7050	ENSG00000177426		Holoprosencephaly 4, 142946 (3), Autosomal dominant	Tgif1 (MGI:1194497)
chr18	3496031	4455440	18p11.31	18p11.31	605445	DLGAP1, DAP1, DLGAP1A, DLGAP1B	Discs large-associated protein 1	DLGAP1	9229	ENSG00000170579			Dlgap1 (MGI:1346065)
chr18	5142910	5197751	18p11.31	18p11.31	616427	C18orf42	Chromosome 18 open reading frame 42	AKAIN1	642597	ENSG00000231824			Akain1 (MGI:2444600)
chr18	5289018	5297052	18p11.21	18p11.31	602126	ZFP161, ZF5	Zinc finger protein-161	ZBTB14	7541	ENSG00000198081			Zbtb14 (MGI:1195345)
chr18	5392275	5630662	18p11.3	18p11.31	605331	EPB41L3, DAL1	Erythrocyte membrane protein band 4.1-like 3	EPB41L3	23136	ENSG00000082397			Epb41l3 (MGI:103008)
chr18	5954702	6414918	18p11.31	18p11.31	617135	L3MBTL4	L3MBT-like 4	L3MBTL4	91133	ENSG00000154655			L3mbtl4 (MGI:2444889)
chr18	6729717	6915715	18p11.31	18p11.31	610592	ARHGAP28, KIAA1314	RHO GTPase-activating protein 28	ARHGAP28	79822	ENSG00000088756			Arhgap28 (MGI:2147003)
chr18	6941743	7117813	18p11.31	18p11.31	150320	LAMA1, PTBHS	Laminin, alpha-1	LAMA1	284217	ENSG00000101680		Poretti-Boltshauser syndrome, 615960 (3), Autosomal recessive	Lama1 (MGI:99892)
chr18	7200000	39500000	18p11.23-q12.2		107200	ANIC	Anosmia, isolated congenital		550625		max lod at D18S1108	Anosmia, isolated congenital, 107200 (2), Autosomal dominant	
chr18	7200000	15400000	18p11.2		606616	DYX6, DYXQTL18	Dyslexia, susceptibility to, 6	DYX6	266691			{Dyslexia, susceptibility to, 6}, 606616 (2)	
chr18	7200000	15400000	18p11.2		609253	FEB6	Febrile seizures, familial, 6	FEB6	619397		max lod at D18S1158	Febrile seizures, familial, 6, 609253 (2), Autosomal dominant	
chr18	7200000	8500000	18p11.23		612410	PSORS10	Psoriasis susceptibility 10	PSORS10	503613		between D18S63 and D18S967	{Psoriasis susceptibility 10}, 612410 (2)	
chr18	7567315	8406860	18p11.2	18p11.23	176888	PTPRM, PTPRL1, RPTPM	Protein tyrosine phosphatase, receptor type, mu polypeptide	PTPRM	5797	ENSG00000173482			Ptprm (MGI:102694)
chr18	8609427	8639382	18p11.22	18p11.22	616448	RAB12	Ras-associated protein RAB12	RAB12	201475	ENSG00000206418			Rab12 (MGI:894284)
chr18	8695855	8707620	18p11.22	18p11.22	616131	GACAT2, MTCL1AS1	Gastric cancer-associated transcript 2, noncoding	GACAT2	100287082				
chr18	8706053	8832777	18p11.22	18p11.22	615766	MTCL1, KIAA0802	Microtubule crosslinking factor 1	MTCL1	23255	ENSG00000168502			Mtcl1 (MGI:1915867)
chr18	9102629	9134344	18p11.31-p11.2	18p11.22	600532	NDUFV2	NADH dehydrogenase (ubiquinone) flavoprotein 2, 24kD	NDUFV2	4729	ENSG00000178127	pseudogene on 19q13.3-qter	Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufv2 (MGI:1920150)
chr18	9136752	9285984	18p11.22	18p11.22	610616	ANKRD12, ANCO1, KIAA0874	Ankyrin repeat domain-containing protein 12	ANKRD12	23253	ENSG00000101745			Ankrd12 (MGI:1914357)
chr18	9334766	9402419	18p11.3-p11.2	18p11.22	605049	TWSG1, TSG	Twisted gastrulation, Drosophila, homolog of	TWSG1	57045	ENSG00000128791			Twsg1 (MGI:2137520)
chr18	9475531	9538107	18p11	18p11.22	605801	RALBP1, RLIP76	RALA-binding protein 1	RALBP1	10928	ENSG00000017797			Ralbp1 (MGI:108466)
chr18	9546790	9615272	18p11.22	18p11.22	604908	PPP4R1, PP4R1	Protein phosphatase 4, regulatory subunit 1	PPP4R1	9989	ENSG00000154845			Ppp4r1 (MGI:1917601)
chr18	9708186	9862555	18p11.3	18p11.22	605694	RAB31	Ras-associated protein RAB31	RAB31	11031	ENSG00000168461			Rab31 (MGI:1914603)
chr18	9885725	9888158	18p11.22	18p11.22	617790	TXNDC2, SPTRX1	Thioredoxin domain-containing protein 2	TXNDC2	84203	ENSG00000168454			Txndc2 (MGI:2389312)
chr18	9913957	9960020	18p11.22	18p11.22	605703	VAPA, VAP33	Vesicle-associated membrane protein-associated protein A	VAPA	9218	ENSG00000101558			Vapa (MGI:1353561)
chr18	10454627	10488700	18p11	18p11.22	607479	APCDD1, HHS, HYPT1, HTS	Adenomatosis polyposis coli down-regulated 1	APCDD1	147495	ENSG00000154856		Hypotrichosis 1, 605389 (3), Autosomal dominant	Apcdd1 (MGI:3513977)
chr18	10525875	10552768	18p11.22	18p11.22	603216	NAPG	N-ethylmaleimide-sensitive factor attachment protein, gamma	NAPG	8774	ENSG00000134265			Napg (MGI:104561)
chr18	10670236	11149584	18p11.22	18p11.22-p11.21	613629	PIEZO2, FAM38B, DA5, DA3, MWKS, DAIPT	PIEZO-type mechanosensitive ion channel component 2	PIEZO2	63895	ENSG00000154864	mutation identified in 1 MWKS patient	Arthrogryposis, distal, type 3, 114300 (3), Autosomal dominant; Arthrogryposis, distal, type 5, 108145 (3), Autosomal dominant; Arthrogryposis, distal, with impaired proprioception and touch, 617146 (3), Autosomal recessive; ?Marden-Walker syndrome, 248700 (3), Autosomal dominant	Piezo2 (MGI:1918781)
chr18	11689014	11885684	18p11.21	18p11.21	139312	GNAL, DYT25	Guanine nucleotide-binding protein, alpha-subunit, olfactory type	GNAL	2774	ENSG00000141404		Dystonia 25, 615073 (3), Autosomal dominant	Gnal (MGI:95774)
chr18	11851389	11854448	18p11	18p11.21	606486	CHMP1B, C10orf2	CHMP family, member 1B	CHMP1B	57132	ENSG00000255112			Chmp1b (MGI:1914314)
chr18	11883470	11908796	18p11.2	18p11.21	611900	MPPE1	Metallophosphoesterase 1	MPPE1	65258	ENSG00000154889			Mppe1 (MGI:2661311)
chr18	11981427	12030885	18p11.2	18p11.21	605922	IMPA2	Myo-inositol monophosphatase 2	IMPA2	3613	ENSG00000141401			Impa2 (MGI:2149728)
chr18	12254318	12277594	18p11.21	18p11.21	604440	CIDEA	Cell death-inducing DFFA-like effector A	CIDEA	1149	ENSG00000176194			Cidea (MGI:1270845)
chr18	12307668	12329825	18p11.21	18p11.21	615103	TUBB6, FPVEPD	Tubulin, beta-6	TUBB6	84617	ENSG00000176014	mutation identified in 1 FPVEPD family	?Facial palsy, congenitla, with ptosis and velopharyngeal dysfunction, 617732 (3), Autosomal dominant	Tubb6 (MGI:1915201)
chr18	12328943	12377308	18p11	18p11.21	604581	AFG3L2, SCA28, SPAX5	ATPase family gene 3-like 2	AFG3L2	10939	ENSG00000141385		Spastic ataxia 5, autosomal recessive, 614487 (3), Autosomal recessive; Spinocerebellar ataxia 28, 610246 (3), Autosomal dominant	Afg3l2 (MGI:1916847)
chr18	12407895	12432237	18p11.21	18p11.21	616545	PRELID3A, SLMO1, C18orf43	PRELI domain-containing protein 3A	PRELID3A	10650	ENSG00000141391			Prelid3a (MGI:2442865)
chr18	12658738	12725739	18p11.21	18p11.21	609702	PSMG2, TNFSF5IP1, HCCA3, CLAST3, PAC2	Proteasome (prosome, macropain) assembly chaperone 1	PSMG2	56984	ENSG00000128789			Psmg2 (MGI:1922901)
chr18	12785477	12884350	18p11.3-p11.2	18p11.21	176887	PTPN2, PTPT	Protein tyrosine phosphatase, nonreceptor-type, 2	PTPN2	5771	ENSG00000175354			Ptpn2 (MGI:97806)
chr18	12947983	12987664	18p11.21	18p11.21	609263	SEH1L, SEH1, SEC13L	Seh1-like protein	SEH1L	81929	ENSG00000085415			Seh1l (MGI:1919374)
chr18	12991300	13125052	18p11.21	18p11.21	616426	CEP192, PPP1R62, KIAA1569	Centrosomal protein, 192kD	CEP192	55125	ENSG00000101639			Cep192 (MGI:1918049)
chr18	13217603	13652753	18p11.2	18p11.21	606571	C18orf1	Chromosome 18 open reading frame 1	LDLRAD4	753	ENSG00000168675			Ldlrad4 (MGI:1277150)
chr18	13726644	13764555	18p11.23-p11.22	18p11.21	603514	RNMT, MET	RNA guanine-7-methyltransferase	RNMT	8731	ENSG00000101654			Rnmt (MGI:1915147)
chr18	13825543	13826861	18p11.2	18p11.21	600042	MC5R	Melanocortin-5 receptor	MC5R	4161	ENSG00000176136			Mc5r (MGI:99420)
chr18	13882041	13915706	18p11.2	18p11.21	607397	MC2R	Melanocortin-2 receptor (ACTH receptor)	MC2R	4158	ENSG00000185231		Glucocorticoid deficiency, due to ACTH unresponsiveness, 202200 (3), Autosomal recessive	Mc2r (MGI:96928)
chr18	14748239	14855464	18p11.21	18p11.21	616565	ANKRD30B	Ankyrin repeat domain-containing protein 30B	ANKRD30B	374860	ENSG00000180777			
chr18	18500000	80373285	18q		601808	DEL18q	Chromosome 18q deletion syndrome					Chromosome 18q deletion syndrome, 601808 (4), Autosomal dominant	
chr18	18500000	80373285	18q		143850	OHDS	Orthostatic hypotensive disorder of Streeten		50948			Orthostatic hypotensive disorder of Streeten, 143850 (2), Autosomal dominant	
chr18	20949739	21111850	18q11.1	18q11.1	601702	ROCK1	RHO-associated coiled-coil-containing protein kinase 1	ROCK1	6093	ENSG00000067900			Rock1 (MGI:107927)
chr18	21242224	21528502	18q11.1	18q11.1-q11.2	617782	GREB1L, C18orf6, KIAA1772, RHDA3	GREB1-like protein	GREB1L	80000	ENSG00000141449		Renal hypodysplasia/aplasia 3, 617805 (3)	Greb1l (MGI:3576497)
chr18	21500000	39500000	18q11.2-q12.2		613930	APMR3	Alopecia-mental retardation syndrome 3		100653369		between D18S866 and D18S811	Alopecia-mental retardation syndrome 3, 613930 (2), Autosomal recessive	
chr18	21529280	21600735	18q11.2	18q11.2	609674	ESCO1, ECO1, CTF, ESO1, EFO1, KIAA1911	Establishment of cohesion 1, S. cerevisiae, homolog of, 1	ESCO1	114799	ENSG00000141446			Esco1 (MGI:1925055)
chr18	21612268	21630246	18q11.2	18q11.2	601063	SNRPD1	Small nuclear ribonucleoprotein polypeptide D1	SNRPD1	6632	ENSG00000167088			Snrpd1 (MGI:98344)
chr18	21650896	21704804	18q11.1	18q11.2	612197	ABHD3, LABH3	Abhydrolase domain-containing 3	ABHD3	171586	ENSG00000158201			Abhd3 (MGI:2147183)
chr18	21740792	21870956	18q11.2	18q11.2	608677	MIB1, MIB, DIP1, KIAA1323, LVNC7	Mindbomb, Drosophila, homolog of, 1	MIB1	57534	ENSG00000101752		Left ventricular noncompaction 7, 615092 (3), Autosomal dominant	Mib1 (MGI:2443157)
chr18	21825697	21825784	18q11.2	18q11.2	610254	MIR133A1	Micro RNA 133A1	MIR133A1	406922				
chr18	21829003	21829087	18q11.2	18q11.2	610252	MIR1-2	Micro RNA 1-2	MIR1-2	406905				
chr18	22169436	22202527	18q11.1-q11.2	18q11.2	601656	GATA6, AVSD5, ASD9, PACHD	GATA-binding protein-6	GATA6	2627	ENSG00000141448		Atrial septal defect 9, 614475 (3), Autosomal dominant; Atrioventricular septal defect 5, 614474 (3), Autosomal dominant; Pancreatic agenesis and congenital heart defects, 600001 (3), Autosomal dominant; Persistent truncus arteriosus, 217095 (3); Tetralogy of Fallot, 187500 (3), Autosomal dominant	Gata6 (MGI:107516)
chr18	22914120	23026485	18q11.2	18q11.2	604124	RBBP8, RIM, SCKL2, JWDS	Retinoblastoma-binding protein 8	RBBP8	5932	ENSG00000101773		Jawad syndrome, 251255 (3), Autosomal recessive; Pancreatic carcinoma, somatic (3); Seckel syndrome 2, 606744 (3), Autosomal recessive	Rbbp8 (MGI:2442995)
chr18	23237251	23437968	18q11.2	18q11.2	615430	TMEM241, C18orf45	Transmembrane protein 241	TMEM241	85019	ENSG00000134490			Tmem241 (MGI:2442435)
chr18	23452822	23483139	18q11.2	18q11.2	603579	RIOK3, SUDD	RIO kinase 3	RIOK3	8780	ENSG00000101782			Riok3 (MGI:1914128)
chr18	23506183	23586616	18q11-q12	18q11.2	607623	NPC1, NPC	NPC1 gene	NPC1	4864	ENSG00000141458	some families not linked to 18; type D prob. allelic	Niemann-Pick disease, type C1, 257220 (3), Autosomal recessive; Niemann-Pick disease, type D, 257220 (3), Autosomal recessive	Npc1 (MGI:1097712)
chr18	23689442	23955065	18q11.2	18q11.2	600805	LAMA3, LOCS	Laminin, alpha-3 (nicein, 150kD; kalinin, 165kD; BM600, 150kD; epiligrin)	LAMA3	3909	ENSG00000053747		Epidermolysis bullosa, generalized atrophic benign, 226650 (3), Autosomal recessive; Epidermolysis bullosa, junctional, Herlitz type, 226700 (3), Autosomal recessive; Laryngoonychocutaneous syndrome, 245660 (3), Autosomal recessive	Lama3 (MGI:99909)
chr18	24138955	24161599	18q12.2	18q11.2	612135	CABYR, FSP2	Calcium-binding tyrosine phosphorylation-regulated protein	CABYR	26256	ENSG00000154040			Cabyr (MGI:1918382)
chr18	24162044	24397881	18q11-q12	18q11.2	606730	OSBPL1A, ORP1	Oxysterol-binding protein-like protein 1A	OSBPL1A	114876	ENSG00000141447			Osbpl1a (MGI:1927551)
chr18	24426644	24453530	18q11.2-q12.1	18q11.2	615319	IMPACT	Impact RWD domain protein	IMPACT	55364	ENSG00000154059			Impact (MGI:1098233)
chr18	24460628	24479956	18q11.2	18q11.2	606792	HRH4, HH4R	Histamine receptor H4	HRH4	59340	ENSG00000134489			Hrh4 (MGI:2429635)
chr18	25061923	25352249	18q11.2	18q11.2	610974	ZNF521, EHZF, EVI3	Zinc finger protein 521	ZNF521	25925	ENSG00000198795			Zfp521 (MGI:95459)
chr18	26016252	26091216	18q11.2	18q11.2	600192	SS18, SSXT, SYT	Synovial sarcoma translocation, chromosome 18	SS18	6760	ENSG00000141380	5' SYST/3' SSRC in t(X;18)	Sarcoma, synovial (1)	Ss18 (MGI:107708)
chr18	26133846	26193354	18q11.2	18q11.2	617841	PSMA8, PSMA7L	Proteasome subunit, alpha-type, 8	PSMA8	143471	ENSG00000154611			Psma8 (MGI:1920927)
chr18	26226444	26391684	18q11.2	18q11.2	601689	TAF4B, TAF2C2, TAFII105, SPGF13	TAF4b RNA polymerase II, TATA box-binding protein-associated factor, 105kD	TAF4B	6875	ENSG00000141384	mutation identified in 1 SPGF13 family	?Spermatogenic failure 13, 615841 (3), Autosomal recessive	Taf4b (MGI:2152345)
chr18	26454909	26657511	18q11.2	18q11.2	613420	KCTD1, SENS	Potassium channel tetramerization domain-containing 1	KCTD1	284252	ENSG00000134504		Scalp-ear-nipple syndrome, 181270 (3), Autosomal dominant	Kctd1 (MGI:1918269)
chr18	26687620	26703637	18q11.2	18q11.2	617647	PCAT18, LINC01092	Prostate cancer-associated transcript 18, noncoding	PCAT18	728606				
chr18	26852037	26865802	18q11.2-q12.1	18q11.2	600308	AQP4, MIWC	Aquaporin-4	AQP4	361	ENSG00000171885			Aqp4 (MGI:107387)
chr18	26908753	27185363	18q11.2	18q11.2	610191	CHST9, GalNAc4ST2	Carbohydrate sulfotransferase 9	CHST9	83539	ENSG00000154080			Chst9 (MGI:1918617)
chr18	27932877	28177445	18q11.2	18q12.1	114020	CDH2, NCAD	Cadherin 2 (cadherin, neuronal type; N-cadherin)	CDH2	1000	ENSG00000170558			Cdh2 (MGI:88355)
chr18	30989364	31042814	18q12.1	18q12.1	600271	DSC3, DSC4	Desmocollin-3	DSC3	1825	ENSG00000134762	mutation identified in 1 HYPTSV family	?Hypotrichosis and recurrent skin vesicles, 613102 (3), Autosomal recessive	Dsc3 (MGI:1194993)
chr18	31065973	31102431	18q12.1	18q12.1	125645	DSC2, DSC3, ARVD11	Desmocollin-2	DSC2	1824	ENSG00000134755		Arrhythmogenic right ventricular dysplasia 11, 610476 (3), Autosomal recessive, Autosomal dominant; Arrhythmogenic right ventricular dysplasia 11 with mild palmoplantar keratoderma and woolly hair, 610476 (3), Autosomal recessive, Autosomal dominant	Dsc2 (MGI:103221)
chr18	31129235	31162855	18q12.1	18q12.1	125643	DSC1	Desmocollin-1	DSC1	1823	ENSG00000134765			Dsc1 (MGI:109173)
chr18	31318088	31359245	18q12.1-q12.2	18q12.1	125670	DSG1, PPKS1, SPPK1, EPKHE	Desmoglein-1	DSG1	1828	ENSG00000134760	pemphigus foliaceous antigen	Erythroderma, congenital, with palmoplantar keratoderma, hypotrichosis, and hyper IgE, 615508 (3), Autosomal recessive; Keratosis palmoplantaris striata I, AD, 148700 (3), Autosomal dominant	Dsg1a,Dsg1b (MGI:94930,MGI:2664357)
chr18	31376776	31415790	18q12	18q12.1	607892	DSG4, LAH, HYPT6	Desmoglein 4	DSG4	147409	ENSG00000175065		Hypotrichosis 6, 607903 (3), Autosomal recessive	Dsg4 (MGI:2661061)
chr18	31447768	31478711	18q12.1-q12.2	18q12.1	169615	DSG3	Desmoglein-3 (pemphigus vulgaris antigen)	DSG3	1830	ENSG00000134757			Dsg3 (MGI:99499)
chr18	31498003	31549007	18q12.1-q12.2	18q12.1	125671	DSG2, ARVD10, ARVC10, CMD1BB	Desmoglein-2	DSG2	1829	ENSG00000046604		Arrhythmogenic right ventricular dysplasia 10, 610193 (3), Autosomal dominant; Cardiomyopathy, dilated, 1BB, 612877 (3)	Dsg2 (MGI:1196466)
chr18	31591766	31599023	18q11.2-q12.1	18q12.1	176300	TTR, PALB	Transthyretin (prealbumin)	TTR	7276	ENSG00000118271		Amyloidosis, hereditary, transthyretin-related, 105210 (3), Autosomal dominant; Carpal tunnel syndrome, familial, 115430 (3), Autosomal dominant; [Dystransthyretinemic hyperthyroxinemia], 145680 (3), Autosomal dominant	Ttr (MGI:98865)
chr18	31621035	31724669	18q11	18q12.1	604017	B4GALT6	Beta-1,4-galactosyltransferase 6	B4GALT6	9331	ENSG00000118276			B4galt6 (MGI:1928380)
chr18	31759695	31760879	18q12.1	18q12.1	616153	SLC25A52, MCART2	Solute carrier family 25, member 52	SLC25A52	147407	ENSG00000141437			
chr18	31829172	31943127	18q12.1	18q12.1	614136	TRAPPC8, KIAA1012	Trafficking protein particle complex, subunit 8	TRAPPC8	22878	ENSG00000153339			Trappc8 (MGI:2443008)
chr18	32018481	32090755	18q12.1	18q12.1	610432	RNF125, TRAC1, TNORS	RING finger protein 125	RNF125	54941	ENSG00000101695		Tenorio syndrome, 616260 (3), Autosomal dominant	
chr18	32091854	32131560	18q12.1	18q12.1	616319	RNF138, NARF	RING finger protein 138	RNF138	51444	ENSG00000134758			Rnf138 (MGI:1929211)
chr18	32190023	32222606	18q12.2-q12.3	18q12.1	600389	MEP1B	Meprin A, beta	MEP1B	4225	ENSG00000141434			Mep1b (MGI:96964)
chr18	32672672	32773010	18q12.1	18q12.1	613772	KLHL14, PRINTOR, KIAA1384	Kelch-like 14	KLHL14	57565	ENSG00000197705			Klhl14 (MGI:1921249)
chr18	33578576	33751194	18q12.1	18q12.1	615115	ASXL3, KIAA1713, BRPS	Additional sex combs-like 3	ASXL3	80816	ENSG00000141431		Bainbridge-Ropers syndrome, 615485 (3)	Asxl3 (MGI:2685175)
chr18	33851099	34224956	18q12.1	18q12.1	603577	NOL4, NOLP	Nucleolar protein 4	NOL4	8715	ENSG00000101746			Nol4 (MGI:2441684)
chr18	34493289	34891843	18q12.1-q12.2	18q12.1	601239	DTNA, D18S892E, DRP3, LVNC1	Dystobrevin, alpha (dystrophin-related protein 3)	DTNA	1837	ENSG00000134769		Left ventricular noncompaction 1, with or without congenital heart defects, 604169 (3), Autosomal dominant	Dtna (MGI:106039)
chr18	34976927	35143469	18q12	18q12.1-q12.2	605789	MAPRE2, EB2, RP1, CSCSC2	Microtubule-associated protein, RP/EB family, member 2	MAPRE2	10982	ENSG00000166974		Symmetric circumferential skin creases, congenital, 2, 616734 (3), Autosomal dominant	
chr18	35100000	45900000	18q12.2-q12.3		605293	OPA4	Optic atrophy 4	OPA4	58156			Optic atrophy 4, 605293 (2)	
chr18	35240703	35258432	18q12	18q12.2	609601	ZNF397	Zinc finger protein-397	ZNF397	84307	ENSG00000186812			Zfp397 (MGI:1916506)
chr18	35290271	35310765	18q12	18q12.2	604754	ZNFEB, ZNF271	Epstein-Barr virus-induced zinc finger protein	ZNF271P	10778				
chr18	35332207	35344466	18q12	18q12.2	194534	ZNF24	Zinc finger protein-24 (KOX17)	ZNF24	7572	ENSG00000172466			Zfp24 (MGI:1929704)
chr18	35366696	35377336	18q12	18q12.2	609600	ZNF396	Zinc finger protein-396	ZNF396	252884	ENSG00000186496			
chr18	35654568	35711833	18q12.1	18q12.2	602273	GALNT1	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1	GALNT1	2589	ENSG00000141429			Galnt1 (MGI:894693)
chr18	35904817	35904925	18q12.2	18q12.2	612698	MIR187, MIRN187	Micro RNA 187	MIR187	406963				
chr18	35982384	36067593	18q12	18q12.2	610347	RPRD1A, P15RS, FLJ10656	Regulation of nuclear pre-mRNA domain-containing protein 1A	RPRD1A	55197	ENSG00000141425			Rprd1a (MGI:2385066)
chr18	36129873	36177930	18q12.2	18q12.2	616054	ELP2, STATIP1, MRT58	Elongator acetyltransferase complex, subunit 2	ELP2	55250	ENSG00000134759		Mental retardation, autosomal recessive 58, 617270 (3), Autosomal recessive	Elp2 (MGI:1889642)
chr18	36187209	36268721	18q12.2	18q12.2	613274	MOCOS, MCS, XAN2	Molybdenum cofactor sulfurase	MOCOS	55034	ENSG00000075643		Xanthinuria, type II, 603592 (3), Autosomal recessive	Mocos (MGI:1915841)
chr18	36297695	36780219	18q12.2	18q12.2	609691	FHOD3, FHOS2, KIAA1695	Formin homology-2 domain-containing protein 3	FHOD3	80206	ENSG00000134775			Fhod3 (MGI:1925847)
chr18	36828816	37232126	18q12.2	18q12.2	616480	KIAA1328, HINDERIN	Hinderin	KIAA1328	57536	ENSG00000150477			AW554918 (MGI:2147376)
chr18	37243039	37566036	18q12	18q12.2	612679	CELF4, BRUNOL4	CUGbp- and ELAV-like family, member 4	CELF4	56853	ENSG00000101489			Celf4 (MGI:1932407)
chr18	39500000	45900000	18q12.3		614319	VUR6	Vesicoureteral reflux 6		100820763		closest marker rs1054986	Vesicoureteral reflux 6, 614319 (2)	
chr18	41955197	42084605	18q12.3	18q12.3	602609	PIK3C3	Phosphatidylinositol 3-kinase, class 3	PIK3C3	5289	ENSG00000078142			Pik3c3 (MGI:2445019)
chr18	42743217	43115691	18q12.3	18q12.3	609592	RIT2, RIN, ROC2	Ric-like protein without CAAX motif 2	RIT2	6014	ENSG00000152214			Rit2 (MGI:108054)
chr18	43267891	43277649	18q12.3	18q12.3	600103	SYT4	Synaptotagmin-4	SYT4	6860	ENSG00000132872			Syt4 (MGI:101759)
chr18	44680071	45068509	18q12.31	18q12.3	611060	SETBP1, KIAA0437, SEB, MRD29	SET-binding protein 1	SETBP1	26040	ENSG00000152217	fused with NUP98 in ALL	Mental retardation, autosomal dominant 29, 616078 (3), Autosomal dominant; Schinzel-Giedion midface retraction syndrome, 269150 (3), Autosomal dominant	Setbp1 (MGI:1933199)
chr18	45202957	45683685	18q12.1-q21.1	18q12.3	601611	SLC14A2, UT2, UTR	Solute carrier family 14 (urea transporter), member 2	SLC14A2	8170	ENSG00000132874			Slc14a2 (MGI:1351653)
chr18	45724122	45752519	18q11-q12	18q12.3	613868	SLC14A1, JK, UTE, UT1	Solute carrier family 14 (urea transporter), member 1 (Kidd blood group)	SLC14A1	6563	ENSG00000141469	previous suggestion of chr.7 or chr.2	[Blood group, Kidd], 111000 (3)	Slc14a1 (MGI:1351654)
chr18	45800585	45967338	18q12.3-q21.1	18q12.3-q21.1	615068	EPG5, KIAA1632, HEEW1, VICIS	Ectopic P-granules autophagy protein 5, C. elegans, homolog of	EPG5	57724	ENSG00000152223		Vici syndrome, 242840 (3), Autosomal recessive	Epg5 (MGI:1918673)
chr18	45900000	63900000	18q21		606640	ALS3	Amyotrophic lateral sclerosis 3	ALS3	253			Amyotrophic lateral sclerosis 3, 606640 (2), Autosomal dominant	
chr18	45900000	63900000	18q21.1-q21.3		600624	CORD1, CRD1	Cone rod dystrophy 1, autosomal dominant	CORD1	1319			Cone-rod retinal dystrophy-1, 600624 (2), Autosomal dominant	
chr18	45900000	63900000	18q21		601941	IDDM6	Insulin-dependent diabetes mellitus-6	IDDM6	3405			{Diabetes mellitus, insulin-dependent, 6}, 601941 (2)	
chr18	45900000	63900000	18q21		182090	SSAV1	Simian sarcoma-associated virus-1/Gibbon ape leukemia virus		6739				
chr18	45983535	46072326	18q21.1	18q21.1	616046	PSTPIP2, MAYP	Proline/serine/threonine phosphatase-interacting protein 2	PSTPIP2	9050	ENSG00000152229			Pstpip2 (MGI:1335088)
chr18	46084143	46104232	18q12-q21	18q21.1	164360	ATP5A1, ATPM, ATP5A, ORM, MC5DN4, COXPD22	ATP synthase, H+ transporting (ATPase, mitochondrial)	ATP5F1A	498	ENSG00000152234	pseudogenes on chr. 2, chr. 9, and chr.16; mutation identified in 1 MC5DN4 family and 1 COXPD22 family	?Combined oxidative phosphorylation deficiency 22, 616045 (3), Autosomal recessive; ?Mitochondrial complex (ATP synthase) deficiency, nuclear type 4, 615228 (3), Autosomal recessive	Atp5a1 (MGI:88115)
chr18	46104331	46128332	18q21.1	18q21.1	608775	HAUS1, CCDC5, HEIC	HAUS augmin-like complex, subunit 1	HAUS1	115106	ENSG00000152240	pseudogenes on 5, 8, and X		Haus1 (MGI:2385076)
chr18	46476971	46657114	18q12-q21	18q21.1	613072	LOXHD1, DFNB77	Lipoxygenase homology domains-containing 1	LOXHD1	125336	ENSG00000167210		Deafness, autosomal recessive 77, 613079 (3), Autosomal recessive	
chr18	46679117	46757168	18q21.1	18q21.1	607162	SIAT8E	Sialyltransferase 8E	ST8SIA5	29906	ENSG00000101638			St8sia5 (MGI:109243)
chr18	46917549	47104794	18q21.1	18q21.1	614697	KATNAL2	Katanin, p60 subunit, A-like protein 2	KATNAL2	83473	ENSG00000167216			Katnal2 (MGI:1924234)
chr18	47155018	47176373	18q21.1	18q21.1	609382	IER3IP1, MEDS	Immediate-early response 3-interacting protein 1	IER3IP1	51124	ENSG00000134049		Microcephaly, epilepsy, and diabetes syndrome, 614231 (3), Autosomal recessive	Ier3ip1 (MGI:1913441)
chr18	47206176	47249523	18q21.1	18q21.1	617138	SKOR2, FUSSEL18, CORL2	SKI family transcriptional corepressor 2	SKOR2	652991	ENSG00000215474			Skor2 (MGI:3645984)
chr18	47833094	47931187	18q21	18q21.1	601366	MADH2, JV18, SMAD2	Mothers against decapentaplegic, Drosophila, homolog of, 2	SMAD2	4087	ENSG00000175387			Smad2 (MGI:108051)
chr18	48026885	48412638	18q21	18q21.1	616591	ZBTB7C, APM1	Zinc finger- and BTB domain-containing protein 7C	ZBTB7C	201501	ENSG00000184828			Zbtb7c (MGI:2443302)
chr18	48539055	48863216	18q21.1	18q21.1	613178	KIAA0427, CTIF	KIAA0427 gene	CTIF	9811	ENSG00000134030			Ctif (MGI:2685518)
chr18	48919852	48950710	18q21.1	18q21.1	602932	SMAD7, MADH7, CRCS3	Mothers against decapentaplegic, Drosophila, homolog of, 7	SMAD7	4092	ENSG00000101665		{Colorectal cancer, susceptibility to, 3}, 612229 (3)	Smad7 (MGI:1100518)
chr18	49041473	49460732	18q12-q21.1	18q21.1	607461	DYM, FLJ90130, DMC, SMC	Dymeclin	DYM	54808	ENSG00000141627		Dyggve-Melchior-Clausen disease, 223800 (3), Autosomal recessive; Smith-McCort dysplasia, 607326 (3), Autosomal recessive	Dym (MGI:1918480)
chr18	49488480	49492564	18q	18q21.1	603661	RPL17	Ribosomal protein L17	RPL17	6139	ENSG00000265681			Rpl17-ps8,Rpl17 (MGI:2448270,MGI:3802129)
chr18	49560698	49592907	18q21.1	18q21.1	603684	LIPG, EL, EDL	Lipase G, endothelial	LIPG	9388	ENSG00000101670			Lipg (MGI:1341803)
chr18	49783503	49813880	18q21.1	18q21.1	604770	ACAA2	Acetyl-CoA acyltransferase 2	ACAA2	10449	ENSG00000167315			Acaa2 (MGI:1098623)
chr18	49814022	49814442	18q21.1	18q21.1	615645	SCARNA17	Small Cajal body-specific RNA 17	SCARNA17	677769				
chr18	49822785	50195080	18q21	18q21.1	606540	MYO5B, KIAA1119	Myosin VB	MYO5B	4645	ENSG00000167306		Microvillus inclusion disease, 251850 (3), Autosomal recessive	Myo5b (MGI:106598)
chr18	50227192	50266521	18q21.1	18q21.1	614759	CCDC11, HTX6	Coiled-coil domain-containing protein 11	CFAP53	220136	ENSG00000172361		Heterotaxy, visceral, 6, autosomal recessive, 614779 (3), Autosomal recessive	Cfap53 (MGI:1921703)
chr18	50266881	50281773	18q21.1	18q21.1	156535	MBD1, PCM1	Methyl=CpG binding domain protein 1 (protein containing methyl-CpG binding domain 1)	MBD1	4152	ENSG00000141644			Mbd1 (MGI:1333811)
chr18	50375021	50394167	18q21.1	18q21.1	616673	SKA1, C18orf24	Spindle- and kinetochore-associated complex, subunit 1	SKA1	220134	ENSG00000154839			Ska1 (MGI:1913718)
chr18	50559771	50731825	18q12-q21	18q21.1-q21.2	176949	MAPK4, PRKM4, ERK3	Mitogen-activated protein kinase 4	MAPK4	5596	ENSG00000141639			Mapk4 (MGI:2444559)
chr18	50700000	56200000	18q21.2		611014	HYT8	Hypertension, essential, susceptibility to, 8		100188321		associated with rs1941958 and rs1893379	{Hypertension, essential, susceptibility to, 8}, 611014 (2)	
chr18	50795119	50825412	18q21	18q21.2	608080	MRO, B29	Maestro	MRO	83876	ENSG00000134042			Mro (MGI:2152817)
chr18	50878701	50949794	18q21	18q21.2	154270	ME2	Malic enzyme, mitochondrial	ME2	4200	ENSG00000082212	10cM distal to F13A; previously mapped to chr.6		Me2 (MGI:2147351)
chr18	50968016	50988119	18q21	18q21.2	608079	ELAC1, D29	Elac, E. coli, homolog of, 1	ELAC1	55520	ENSG00000141642			Elac1 (MGI:1890495)
chr18	51030212	51085041	18q21.1	18q21.2	600993	SMAD4, MADH4, DPC4, JIP, MYHRS	Mothers against decapentaplegic, Drosophila, homolog of, 4	SMAD4	4089	ENSG00000141646		Juvenile polyposis/hereditary hemorrhagic telangiectasia syndrome, 175050 (3), Autosomal dominant; Myhre syndrome, 139210 (3), Autosomal dominant; Pancreatic cancer, somatic, 260350 (3); Polyposis, juvenile intestinal, 174900 (3), Autosomal dominant	Smad4 (MGI:894293)
chr18	51174549	51197680	18q21.2	18q21.2	611005	MEX3C, RKHD2	Mex-3, C. elegans, homolog of, C	MEX3C	51320	ENSG00000176624			Mex3c (MGI:2652843)
chr18	52340171	53535902	18q21.3	18q21.2	120470	DCC, MRMV1, HGPPS2	Deleted in colorectal carcinoma	DCC	1630	ENSG00000187323		Colorectal cancer, somatic, 114500 (3); Esophageal carcinoma, somatic, 133239 (3); Gaze palsy, familial horizontal, with progressive scoliosis, 2, 617542 (3), Autosomal recessive; Mirror movements 1 and/or agenesis of the corpus callosum, 157600 (3), Autosomal dominant	Dcc (MGI:94869)
chr18	54151600	54224787	18q21	18q21.2	603547	MBD2	Methyl-CpG-binding domain protein 2	MBD2	8932	ENSG00000134046			Mbd2 (MGI:1333813)
chr18	54269478	54321265	18q21.1	18q21.2	605252	POLI, RAD30B	Polymerase, DNA, iota	POLI	11201	ENSG00000101751			Poli (MGI:1347081)
chr18	54324591	54358461	18q21	18q21.2	607051	STARD6	Start domain-containing protein 6	STARD6	147323	ENSG00000174448			Stard6 (MGI:2156774)
chr18	54357913	54382034	18q21	18q21.2	613258	C18orf54, LAS2	Chromosome 18 open reading frame 54	C18orf54	162681	ENSG00000166845			4930503L19Rik (MGI:1922045)
chr18	54901508	54959538	18q21.2	18q21.2	616909	CCDC68	Coiled-coil domain-containing protein 68	CCDC68	80323	ENSG00000166510			Ccdc68 (MGI:3612676)
chr18	55222330	55635992	18q21.2	18q21.2	602272	TCF4, SEF2, ITF2, PTHS, FECD3	Transcription factor-4 (immunoglobulin transcription factor-2)	TCF4	6925	ENSG00000196628		Corneal dystrophy, Fuchs endothelial, 3, 613267 (3), Autosomal dominant; Pitt-Hopkins syndrome, 610954 (3), Autosomal dominant	Tcf4 (MGI:98506)
chr18	56200000	63900000	18q21.3		212200	CNSN	Carnosinemia (carnosinase)		8173			Carnosinemia, 212200 (2), Autosomal recessive	
chr18	56602821	56638688	18q21.31	18q21.31	603049	TXNL1, TXNL	Thioredoxin-like 1	TXNL1	9352	ENSG00000091164			Txnl1 (MGI:1860078)
chr18	56651358	57029804	18q21.3	18q21.31	613473	WDR7, TRAG, KIAA0541	WD repeat-containing protein 7	WDR7	23335	ENSG00000091157			Wdr7 (MGI:1860197)
chr18	57054558	57072118	18q21.2	18q21.31	615173	LINC-ROR	Long intergenic noncoding RNA, regulator of reprogramming	LINC-ROR	100885779				
chr18	57435684	57491297	18q21.1-q21.2	18q21.31	604894	ONECUT2, OC2	One cut domain, family member 2	ONECUT2	9480	ENSG00000119547			Onecut2 (MGI:1891408)
chr18	57544840	57586736	18q21.3	18q21.31	612386	FECH, FCE	Ferrochelatase	FECH	2235	ENSG00000066926		Protoporphyria, erythropoietic, autosomal recessive, 177000 (3), Autosomal recessive	Fech (MGI:95513)
chr18	57600655	57621944	18q21.1-q21.3	18q21.31	108410	NARS, ASNRS	Asparaginyl-tRNA synthetase	NARS	4677	ENSG00000134440			Nars (MGI:1917473)
chr18	57646425	57803821	18q21	18q21.31	602397	ATP8B1, FIC1, BRIC, PFIC1, ICP1	ATPase, class I, type 8B, member 1	ATP8B1	5205	ENSG00000081923		Cholestasis, benign recurrent intrahepatic, 243300 (3), Autosomal recessive; Cholestasis, intrahepatic, of pregnancy, 1, 147480 (3), Autosomal dominant; Cholestasis, progressive familial intrahepatic 1, 211600 (3), Autosomal recessive	Atp8b1 (MGI:1859665)
chr18	58044233	58401539	18q21	18q21.31	606384	NEDD4L, KIAA0439, RSP5, PVNH7	Ubiquitin protein ligase NEDD4-like	NEDD4L	23327	ENSG00000049759		Periventricular nodular heterotopia 7, 617201 (3), Autosomal dominant	Nedd4l (MGI:1933754)
chr18	58451073	58451157	18q21	18q21.31	609582	MIR122A, MIRN122A	Micro RNA 122A	MIR122	406906				
chr18	58671385	58753805	18q21	18q21.32	604860	MALT1, MLT, IMD12	Mucosa-associated lymphoid tissue lymphoma translocation gene 1	MALT1	10892	ENSG00000172175	fused with API2 in MALT lymphoma	Immunodeficiency 12, 615468 (3), Autosomal recessive	Malt1 (MGI:2445027)
chr18	59219187	59230773	18q21	18q21.32	137260	GRP	Gastrin-releasing peptide	GRP	2922	ENSG00000134443	mammalian equivalent of bombesin		Grp (MGI:95833)
chr18	59267034	59273392	18q21.3	18q21.32	601881	RAX, RX, MCOP3	Retina and anterior neural fold homeobox gene	RAX	30062	ENSG00000134438		Microphthalmia, isolated 3, 611038 (3), Autosomal recessive	Rax (MGI:109632)
chr18	59327822	59359275	18q21.3-q22	18q21.32	601567	LMAN1, ERGIC53, F5F8D, MCFD1	Lectin, mannose-binding, 1	LMAN1	3998	ENSG00000074695		Combined factor V and VIII deficiency, 227300 (3), Autosomal recessive	Lman1 (MGI:1917611)
chr18	59430938	59698180	18q21.32	18q21.32	612753	CCBE1, KIAA1983, HKLLS1	Collagen and calcium-binding EGF domain-containing protein 1	CCBE1	147372	ENSG00000183287		Hennekam lymphangiectasia-lymphedema syndrome 1, 235510 (3), Autosomal recessive	Ccbe1 (MGI:2445053)
chr18	59899959	59904305	18q21.32	18q21.32	604959	PMAIP1, APR, NOXA	Phorbol-12-myristate-13-acetate-induced protein 1	PMAIP1	5366	ENSG00000141682			
chr18	60371330	60372767	18q22	18q21.32	155541	MC4R	Melanocortin-4 receptor	MC4R	4160	ENSG00000166603		Obesity, autosomal dominant, 601665 (3), Autosomal recessive, Autosomal dominant, Multifactorial	Mc4r (MGI:99457)
chr18	61333581	61555772	18q22-q23	18q21.33	605807	CDH20	Cadherin 20	CDH20	28316	ENSG00000101542			Cdh20 (MGI:1346069)
chr18	61808066	61894419	18q21.33	18q21.33	616512	RNF152	Ring finger protein 152	RNF152	220441	ENSG00000176641			Rnf152 (MGI:2443787)
chr18	62044223	62187117	18q21.33	18q21.33	606097	PIGN, MCAHS1	Phosphatidylinositol glycan, class N	PIGN	23556	ENSG00000197563		Multiple congenital anomalies-hypotonia-seizures syndrome 1, 614080 (3), Autosomal recessive	Pign (MGI:1351629)
chr18	62325286	62388095	18q22.1	18q21.33	603499	TNFRSF11A, RANK, ODFR, FEO, OPTB7, PDB2	Tumor necrosis factor receptor superfamily, member 11A	TNFRSF11A	8792	ENSG00000141655		Osteolysis, familial expansile, 174810 (3), Autosomal dominant; Osteopetrosis, autosomal recessive 7, 612301 (3); {Paget disease of bone 2, early-onset}, 602080 (3), Autosomal dominant	Tnfrsf11a (MGI:1314891)
chr18	62715438	62980442	18q21.33	18q21.33	609396	PHLPP1, SCOP, KIAA0606	PH domain and leucine-rich repeat protein phosphatase	PHLPP1	23239	ENSG00000081913			Phlpp1 (MGI:2138327)
chr18	63123345	63320279	18q21.3	18q21.33	151430	BCL2	B-cell CLL/lymphoma-2	BCL2	596	ENSG00000171791	most frequent hematologic malignancy t(14;18)(q32;q21)	Leukemia/lymphoma, B-cell, 2 (3)	Bcl2 (MGI:88138)
chr18	63327735	63367272	18q21.3	18q21.33	136440	KDSR, FVT1, EKVP4	3-ketodihydrosphingosine reductase	KDSR	2531	ENSG00000119537	~10kb 5' to BCL2	Erythrokeratodermia variabilis et progressiva 4, 617526 (3), Autosomal recessive	Kdsr (MGI:1918000)
chr18	63389189	63422518	18q21.3	18q21.33	609983	VPS4B, SKD1	Vacuolar protein sorting 4, yeast, homolog of, B	VPS4B	9525	ENSG00000119541			Vps4b (MGI:1100499)
chr18	63476910	63505084	18q21.3	18q21.33	154790	PI5, SERPINB5	Protease inhibitor 5 (maspin)	SERPINB5	5268	ENSG00000206075	in cluster of serpins		Serpinb5 (MGI:109579)
chr18	63519163	63569328	18q21.3	18q21.33	615662	SERPINB12	Serpin peptidase inhibitor, clade (ovalbumin), member 12	SERPINB12	89777	ENSG00000166634			Serpinb12 (MGI:1919119)
chr18	63586653	63599198	18q21.3	18q21.33	604445	SERPINB13, PI13, HURPIN	Protease inhibitor 13	SERPINB13	5275	ENSG00000197641			Serpinb13 (MGI:3042250)
chr18	63637258	63644318	18q21.3	18q21.33	600518	SERPINB4, SCCA2	Serpin peptidase inhibitor, clade B (ovalbumin), member 4 (squamous cell carcinoma antigen 2)	SERPINB4	6318	ENSG00000206073			Serpinb3a (MGI:3573933)
chr18	63655196	63661962	18q21.3	18q21.33	600517	SERPINB3, SCCA1	Serpin peptidase inhibitor, clade B (ovalbumin), member 3 (squamous cell carcinoma antigen 1)	SERPINB3	6317	ENSG00000057149			Serpinb3d (MGI:2683295)
chr18	63702303	63723892	18q21.3	18q21.33	615682	SERPINB11	Serpin peptidase inhibitor, clade B (ovalbumin), member 11	SERPINB11	89778	ENSG00000206072			Serpinb11 (MGI:1914207)
chr18	63753046	63805375	18q21.3	18q21.33	603357	SERPINB7, MEGSIN, PPKN	Serpin peptidase inhibitor, clade B (ovalbumin), member 7	SERPINB7	8710	ENSG00000166396		Palmoplantar keratoderma, Nagashima type, 615598 (3), Autosomal recessive	Serpinb7 (MGI:2151053)
chr18	63887704	63903889	18q21.3	18q21.3-q22.1	173390	SERPINB2, PAI2, PLANH2	Serpin peptidase inhibitor, clade B (ovalbumin), member 2 (Plasminogen activator inhibitor, type II (arginine-serpin))	SERPINB2	5055	ENSG00000197632	600kb telomeric to BCL2		Serpinb2 (MGI:97609)
chr18	63900000	75400000	18q22		609334	DUP18pDEL18q, DUP18qDEL18p	Chromosome 18 pericentric inversion					Chromosome 18 pericentric inversion, 609334 (4)	
chr18	63900000	75400000	18q22.1-q22.3		602401	ECTD8	Ectodermal dysplasia 8, hair/tooth/nail type		101101768		between D18S857 and D18S815	Ectodermal dysplasia 8, hair/tooth/nail type, 602401 (2), Autosomal recessive	
chr18	63907968	63936110	18q21.3	18q22.1	602058	SERPINB10, PI10	Protease inhibitor 10, ovalbumin type (bomapin)	SERPINB10	5273	ENSG00000242550			Serpinb10 (MGI:2138648)
chr18	63949258	63969328	18q21.3	18q22.1	612086	HMSD	Minor histocompatibility antigen, serpin domain-containing	HMSD	284293	ENSG00000221887			
chr18	63970027	64019778	18q21.3	18q22.1	601697	SERPINB8, PI8, CAP2, PSS5	Serpin family B, member 8	SERPINB8	5271	ENSG00000166401		Peeling skin syndrome 5, 617115 (3), Autosomal recessive	Serpinb8 (MGI:894657)
chr18	64080008	64149025	18q22.1	18q22.1	617489	LINC00305	Long intergenic noncoding RNA 305	LINC00305	221241				
chr18	65750251	65885135	18q22-q23	18q22.1	605806	CDH7	Cadherin-7	CDH7	1005	ENSG00000081138			Cdh7 (MGI:2442792)
chr18	66501186	66604240	18q22-q23	18q22.1	603016	CDH19, CDH7	Cadherin 19	CDH19	28513	ENSG00000071991			Cdh19 (MGI:3588198)
chr18	67506581	67516729	18q21-q22	18q22.1	611125	DSEL, C18orf4, NCAG1	Dermatan sulfate epimerase-like	DSEL	92126	ENSG00000171451			Dsel (MGI:2442948)
chr18	68673687	68715172	18q22.1	18q22.1	616102	TMX3, TXNDC10, KIAA1830	Thioredoxin-related transmembrane protein 3	TMX3	54495	ENSG00000166479			Tmx3 (MGI:2442418)
chr18	69860227	69962085	18q22.3	18q22.2	605397	DNAM1, CD226	DNAX accessory molecule 1	CD226	10666	ENSG00000150637			Cd226 (MGI:3039602)
chr18	70003803	70205725	18q22.2	18q22.2	610436	RTTN, MSSP	Rotatin	RTTN	25914	ENSG00000176225		Microcephaly, short stature, and polymicrogyria with seizures, 614833 (3), Autosomal recessive	Rttn (MGI:2179288)
chr18	70288900	70330198	18q21.1	18q22.2	605118	SOCS6, SSI4, STAT4, CIS4	Suppressor of cytokine signaling 6	SOCS6	9306	ENSG00000170677			Socs6 (MGI:1924885)
chr18	72533719	72638484	18q22.3	18q22.3	600433	CBLN2	Cerebellin 2 precursor	CBLN2	147381	ENSG00000141668			Cbln2 (MGI:88282)
chr18	72742313	72867671	18q22-q23	18q22.3	607973	NETO1, BCTL1	Neuropilin and tolloid like 1	NETO1	81832	ENSG00000166342			Neto1 (MGI:2180216)
chr18	74073342	74147864	18q22.3	18q22.3	609093	FBXO15, FBX15	F-box only protein 15	FBXO15	201456	ENSG00000141665			Fbxo15 (MGI:1354755)
chr18	74148510	74158968	18q22.3	18q22.3	615180	TIMM21, TIM21	Translocase of inner mitochondrial membrane 21, yeast, homolog of	TIMM21	29090	ENSG00000075336			Timm21 (MGI:1920595)
chr18	74253291	74292015	18q23	18q22.3	613218	CYB5A, MCB5	Cytochrome b5	CYB5A	1528	ENSG00000166347	pseudogenes on X, 14q, 20p; mutation identified in 1 MET5 patient	?Methemoglobinemia, type IV, 250790 (3), Autosomal recessive	Cyb5a (MGI:1926952)
chr18	74435727	74464645	18q22.3	18q22.3	614544	FAM69C	Family with sequence similarity 69, member C	FAM69C	125704	ENSG00000187773			Fam69c (MGI:3041188)
chr18	74496264	74523453	18q23	18q22.3	169800	PEPA	Peptidase A	CNDP2	55748	ENSG00000133313			Cndp2 (MGI:1913304)
chr18	74534456	74585024	18q22.3	18q22.3	609064	CNDP1, CN1	Carnosine dipeptidase 1	CNDP1	84735	ENSG00000150656			Cndp1 (MGI:2451097)
chr18	74590474	75065671	18q22.3	18q22.3	615894	ZNF407	Zinc finger protein 407	ZNF407	55628	ENSG00000215421			Zfp407 (MGI:2685179)
chr18	75210754	75289949	18q22.3	18q22.3	614427	TSHZ1, TSH1, CAA	Teashirt zinc finger homeobox 1	TSHZ1	10194	ENSG00000179981		Aural atresia, congenital, 607842 (3), Autosomal dominant	Tshz1 (MGI:1346031)
chr18	76357681	76495254	18q23	18q23	615114	ZNF516, KIAA0222	Zinc finger protein 516	ZNF516	9658	ENSG00000101493			Zfp516 (MGI:2443957)
chr18	76822549	76970731	18q22-q23	18q23	604760	ZNF236	Zinc finger protein-236	ZNF236	7776	ENSG00000130856			Zfp236 (MGI:1926950)
chr18	76978832	77133707	18q22-qter	18q23	159430	MBP	Myelin basic protein	MBP	4155	ENSG00000197971	defective in "shiverer," neurologic mutant in mouse		Mbp (MGI:96925)
chr18	77250051	77270141	18q23	18q23	600377	GALR1, GALNR1, GALNR	Galanin receptor 1	GALR1	2587	ENSG00000166573			Galr1 (MGI:1096364)
chr18	78980274	78998968	18q23	18q23	605079	SALL3	Sal-like 3	SALL3	27164	ENSG00000256463			Sall3 (MGI:109295)
chr18	79069274	79378390	18q22.3-qter	18q23	614446	ATP9B	ATPase, class II, type 9B	ATP9B	374868	ENSG00000166377			Atp9b (MGI:1354757)
chr18	79395771	79529322	18q23	18q23	600489	NFATC1	Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 1	NFATC1	4772	ENSG00000131196			Nfatc1 (MGI:102469)
chr18	79679800	79754509	18q23	18q23	604927	CTDP1, FCP1, CCFDN	C-terminal domain of RNA polymerase II subunit A, phosphatase of, subunit 1	CTDP1	9150	ENSG00000060069		Congenital cataracts, facial dysmorphism, and neuropathy, 604168 (3), Autosomal recessive	Ctdp1 (MGI:1926953)
chr18	79972866	80033934	18q23	18q23	611595	TXNL4A, DIM1, BMKS	Thioredoxin-like 4A	TXNL4A	10907	ENSG00000141759		Burn-McKeown syndrome, 608572 (3), Autosomal recessive	Txnl4a (MGI:1351613)
chr18	80109030	80140345	18q23	18q23	617422	ADNP2, KIAA0863	Activity-dependent neuroprotector homeobox 2	ADNP2	22850	ENSG00000101544			Adnp2 (MGI:2448562)
chr18	80157231	80247513	18q23	18q23	608976	PARD6G	partitioning-defective protein 6, C. elegans, homolog of	PARD6G	84552	ENSG00000178184			Pard6g (MGI:2135606)
chr19	0	12600000	19p13.3-p13.2		108725	ATHS, ALP	Atherosclerosis susceptibility (lipoprotein associated)	ATHS	470		closely linked to LDLR; may be LDLR	{Atherosclerosis, susceptibility to}, 108725 (2), Autosomal dominant	
chr19	0	58617616	19pter-q13		120050	CXB3S	Coxsackie virus B3 sensitivity	CXB3S	1526				
chr19	0	26200000	19p		600209	EXT3	Exostoses, multiple, 3	EXT3	2133			Exostoses, multiple, type 3, 600209 (2), Autosomal dominant	
chr19	0	6900000	19p13.3		602477	FEB2	Febrile seizures, familial, 2	FEB2	2234			Febrile seizures, familial, 2, 602477 (2), Autosomal dominant	
chr19	0	19900000	19pter-p13.1		614233	FPH1, MUH, HPP	Hyperpigmentation, familial progressive, 1					Hyperpigmentation, familial progressive, 1, 614233 (2)	
chr19	0	19900000	19p13		606674	IBD6	Inflammatory bowel disease 6	IBD6	50942			{Inflammatory bowel disease 6}, 606674 (2)	
chr19	0	6900000	19p13.3		181800	IS1, AIS	Adolescent idiopathic scoliosis		260402			Scoliosis, idiopathic 1, 181800 (2), Autosomal dominant	
chr19	0	6900000	19p13.3		605305	KIR2DL5A, KIR2DL5	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5A	KIR2DL5A	57292				
chr19	0	6900000	19p13.3		601846	MDRV	Muscular dystrophy with rimmed vacuoles	MDRV	4195			Muscular dystrophy with rimmed vacuoles, 601846 (2), Autosomal dominant	
chr19	0	19900000	19p13		607508	MGR5	Migraine with or without aura, susceptibility to, 5		387576			{Migraine with or without aura, susceptibility to, 5}, 607508 (2), Autosomal dominant	
chr19	0	19900000	19p13		615830	PPNAD4	Pigmented nodular adrenocortical disease, primary, 4				duplication of 294kb to 2.7Mb on 19p13	Pigmented nodular adrenocortical disease, primary, 4, 615830 (4), Autosomal dominant	
chr19	0	19900000	19p13		605364	PSORS6	Psoriasis susceptibility 6	PSORS6	63869			{Psoriasis susceptibility 6}, 605364 (2)	
chr19	281039	291434	19p13.3	19p13.3	607126	PLPP2, PPAP2C	Phospholipid phosphatase 2	PLPP2	8612	ENSG00000141934			Plpp2 (MGI:1354945)
chr19	362056	376692	19p13.3	19p13.3	609503	THEG	Testicular haploid expressed gene, mouse, homolog of	THEG	51298	ENSG00000105549			Theg (MGI:1338756)
chr19	405434	409169	19p13.3	19p13.3	610336	C2CD4C, NLF3, KIAA1957	C2 calcium-dependent domain containing 4C	C2CD4C	126567	ENSG00000183186			C2cd4c (MGI:2685084)
chr19	416582	461010	19p13.3	19p13.3	605217	SHC2, SHCB, SCK	SHC transforming protein 2	SHC2	25759	ENSG00000129946			Shc2 (MGI:106180)
chr19	496489	505342	19p13.3	19p13.3	102670	MACAM1	Mucosal addressin cell adhesion molecule-1	MADCAM1	8174	ENSG00000099866			
chr19	531719	542087	19p13.3	19p13.3	116948	CDC34	Cell division cycle 34	CDC34	997	ENSG00000099804			Cdc34 (MGI:102657)
chr19	544033	549919	19p13.3	19p13.3	600311	GZMM	Granzyme M (lymphocyte met-ase 1)	GZMM	3004	ENSG00000197540			Gzmm (MGI:99549)
chr19	571276	583492	19p13.3	19p13.3	109480	BSG	Basigin (blood group OK)	BSG	682	ENSG00000172270		[Blood group, OK], 111380 (3)	Bsg (MGI:88208)
chr19	589892	617158	19p13.3	19p13.3	602781	HCN2, BCNG2	Hyperpolarization-activated cyclic nucleotide-gated potassium channel 2	HCN2	610	ENSG00000099822			Hcn2 (MGI:1298210)
chr19	617220	633567	19p13.3	19p13.3	601778	POLRMT, APOLMT	Polymerase (RNA) mitochondrial (DNA directed)	POLRMT	5442	ENSG00000099821			Polrmt (MGI:1915843)
chr19	639894	643702	19p13.3	19p13.3	605831	FGF22	Fibroblast growth factor 22	FGF22	27006	ENSG00000070388			Fgf22 (MGI:1914362)
chr19	647525	663232	19p13.3	19p13.3	615177	RNF126	RING finger protein 126	RNF126	55658	ENSG00000070423			Rnf126 (MGI:1917544)
chr19	676388	683391	19p13	19p13.3	605343	FSTL3, FLRG	Follistatin-like 3	FSTL3	10272	ENSG00000070404			Fstl3 (MGI:1890391)
chr19	708952	748329	19p13.3	19p13.3	608134	PALM, KIAA0270	Paralemmin	PALM	5064	ENSG00000099864			Palm (MGI:1261814)
chr19	748412	764318	19p13.3	19p13.3	615289	MISP, C19orf21	Mitotic spindle-positioning protein	MISP	126353	ENSG00000099812			Misp (MGI:1926156)
chr19	797391	812326	19p13.3	19p13.3	600693	PTBP1, PTB, HNRNPI	Polypyrimidine tract-binding protein 1	PTBP1	5725	ENSG00000011304	pseudogene on chr. 14		Ptbp1 (MGI:97791)
chr19	810965	824243	19p13.3	19p13.3	610391	PLPPR3, LPPR3, LPR3, PRG2	Phospholipid phosphatase-related protein 3	PLPPR3	79948	ENSG00000129951			Plppr3 (MGI:2388640)
chr19	827825	832017	19p13.3	19p13.3	162815	AZU1, CAP37	Azurocidin-1 (cationic antimicrobial protein-37)	AZU1	566	ENSG00000172232	5\(rm-AZU1-8kb-PR3-3kb-ELAN-3'		
chr19	840964	848174	19p13.3	19p13.3	177020	PRTN3, AGP7	Proteinase-3 (serine proteinase, neutrophil, Wegener granulomatosis autoantigen)	PRTN3	5657	ENSG00000196415			Prtn3 (MGI:893580)
chr19	850996	856249	19p13.3	19p13.3	130130	ELANE, ELA2, SCN1	Elastase, neutrophil-expressed	ELANE	1991	ENSG00000197561		Neutropenia, cyclic, 162800 (3), Autosomal dominant; Neutropenia, severe congenital 1, autosomal dominant, 202700 (3), Autosomal dominant	Elane (MGI:2679229)
chr19	859658	863568	19p13.3	19p13.3	134350	CFD, ADN	Complement factor D	CFD	1675	ENSG00000197766		Complement factor D deficiency, 613912 (3), Autosomal recessive	Cfd (MGI:87931)
chr19	916692	921014	19p13.3	19p13.3	604161	KISS1R, GPR54, HH8, CPPB1	KISS1 receptor	KISS1R	84634	ENSG00000116014	mutation identified in 1 CPPB1 patient	Hypogonadotropic hypogonadism 8 with or without anosmia, 614837 (3), Autosomal recessive; ?Precocious puberty, central, 1, 176400 (3), Autosomal dominant	Kiss1r (MGI:2148793)
chr19	925732	975933	19p13.3	19p13.3	603265	DRIL1	Dead ringer, Drosophila, homolog-like 1	ARID3A	1820	ENSG00000116017			Arid3a (MGI:1328360)
chr19	1009650	1021141	19p13.3	19p13.3	611011	TMEM259, C19orf6	Transmembrane protein 259 (membralin)	TMEM259	91304	ENSG00000182087			Tmem259 (MGI:2177957)
chr19	1026274	1039067	19p13.3	19p13.3	602373	CNN2	Calonin 2	CNN2	1265	ENSG00000064666	previously assigned to 21q11.1		Cnn2 (MGI:105093)
chr19	1040102	1065571	19p13.3	19p13.3	605414	ABCA7, ABCX, AD9	ATP-binding cassette, subfamily A, member 7	ABCA7	10347	ENSG00000064687		{Alzheimer disease 9, susceptibility to}, 608907 (3), Autosomal dominant	Abca7 (MGI:1351646)
chr19	1065922	1087830	19p13.3	19p13.3	601155	HMHA1, HLA-HA1, KIAA0223	Minor histocompatibility antigen HA-1	ARHGAP45	23526	ENSG00000180448			Arhgap45 (MGI:1917969)
chr19	1086578	1095391	19p13.3	19p13.3	180664	POLR2E	Polymerase (RNA) II (DNA directed) polypeptide E, 25kD	POLR2E	5434	ENSG00000099817			Polr2e (MGI:1913670)
chr19	1103925	1106788	19p13.3	19p13.3	138322	GPX4, SMDS	Glutathione peroxidase-4 (phospholipid hydroperoxidase)	GPX4	2879	ENSG00000167468		Spondylometaphyseal dysplasia, Sedaghatian type, 250220 (3), Autosomal recessive	Gpx4 (MGI:104767)
chr19	1107633	1174282	19p13.3	19p13.3	615729	SBNO2, KIAA0963	Strawberry notch, Drosophila, homolog of, 2	SBNO2	22904	ENSG00000064932			Sbno2 (MGI:2448490)
chr19	1205798	1228434	19p13.3	19p13.3	602216	STK11, PJS, LKB1	Serine/threonine protein kinase-11	STK11	6794	ENSG00000118046		Melanoma, malignant, somatic (3); Pancreatic cancer, 260350 (3), Autosomal dominant, Somatic mutation, Multifactorial; Peutz-Jeghers syndrome, 175200 (3), Autosomal dominant; Testicular tumor, somatic, 273300 (3)	Stk11 (MGI:1341870)
chr19	1241749	1244824	19p13.3	19p13.3	603150	ATP5D	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit	ATP5F1D	513	ENSG00000099624			Atp5d (MGI:1913293)
chr19	1248551	1259142	19p13.3	19p13.3	606700	MIDN	Midnolin, mouse, homolog of	MIDN	90007	ENSG00000167470			Midn (MGI:1890222)
chr19	1269265	1274809	19p13.3	19p13.3	602649	CIRBP	Cold-inducible RNA-binding protein	CIRBP	1153	ENSG00000099622			Cirbp (MGI:893588)
chr19	1282816	1301430	19p13.3	19p13.3	602756	EFNA2, EPLG6, LERK6	Ephrin A2	EFNA2	1943	ENSG00000099617			Efna2 (MGI:102707)
chr19	1383883	1395588	19p13	19p13.3	601825	NDUFS7, PSST	NADH dehydrogenase (ubiquinone) Fe-S protein 7, 20kD (NADH-coenzyme Q reductase)	NDUFS7	374291	ENSG00000115286		Leigh syndrome, 256000 (3), Autosomal recessive, Mitochondrial	Ndufs7 (MGI:1922656)
chr19	1397025	1401569	19p13.3	19p13.3	601240	GAMT, CCDS2	Guanidinoacetate methyltransferase	GAMT	2593	ENSG00000130005		Cerebral creatine deficiency syndrome 2, 612736 (3), Autosomal recessive	Gamt (MGI:1098221)
chr19	1438363	1440496	19p	19p13.3	180535	RPS15, RIG	Ribosomal protein S15	RPS15	6209	ENSG00000115268			Rps15 (MGI:98117)
chr19	1446267	1473243	19p13.3	19p13.3	612034	APC2, APCL, SOTOS3	APC2 gene	APC2	10297	ENSG00000115266	mutation identified in 1 SOTOS3 family	?Sotos syndrome 3, 617169 (3), Autosomal recessive	Apc2 (MGI:1346052)
chr19	1481427	1490873	19p13.3	19p13.3	600487	PCSK4	Proprotein convertase subtilisin/kexin type 4	PCSK4	54760	ENSG00000115257			Pcsk4 (MGI:97514)
chr19	1491004	1497926	19p13.3	19p13.3	609346	REEP6, DP1L1, TB2L1, C19orf32, RP77	Receptor expression-enhancing protein 6	REEP6	92840	ENSG00000115255		Retinitis pigmentosa 77, 617304 (3), Autosomal recessive	Reep6 (MGI:1917585)
chr19	1554668	1568057	19p13.3	19p13.3	611009	MEX3D, RKHD1, TINO, KIAA2031	Mex-3, C. elegans, homolog of, D	MEX3D	399664	ENSG00000181588			Mex3d (MGI:2681847)
chr19	1576670	1592760	19p13.3	19p13.3	603573	MBD3	Methyl-CpG-binding domain protein 3	MBD3	53615	ENSG00000071655			Mbd3 (MGI:1333812)
chr19	1597154	1605483	19p13.3	19p13.3	609711	UQCR	Ubiquinol-cytochrome c reductase, 6.4kD subunit	UQCR11	10975	ENSG00000127540			Uqcr11 (MGI:1913844)
chr19	1609283	1652545	19p13.3	19p13.3	147141	TCF3, E2A, AGM8	Transcription factor-3 (E2A immunoglobulin enhancer-binding factors E12/E47)	TCF3	6929	ENSG00000071564		Agammaglobulinemia 8, autosomal dominant, 616941 (3), Autosomal dominant	Tcf3 (MGI:98510)
chr19	1753662	1775444	19p13.3	19p13.3	611294	ONECUT3, OC3	One cut homeobox 3	ONECUT3	390874	ENSG00000205922			
chr19	1782067	1812275	19p13.3	19p13.3	605866	ATP8B3, ATPIK	ATPase, class I, type 8B, member 3	ATP8B3	148229	ENSG00000130270			Atp8b3 (MGI:1914581)
chr19	1815245	1848682	19p13.3	19p13.3	609614	REXO1, REX1, ELOABP1, TCEB3BP1	RNA exonuclease 1, S. cerevisiae, homolog of	REXO1	57455	ENSG00000079313			Rexo1 (MGI:1914182)
chr19	1816158	1816237	19p13.3	19p13.3	615201	MIR1909	Micro RNA 1909	MIR1909	100302210				
chr19	1852398	1863564	19p13.3	19p13.3	606139	KLF16, BTEB4, DRRF	Kruppel-like factor 16	KLF16	83855	ENSG00000129911			
chr19	1905213	1913446	19p13.3	19p13.3	615302	ADAT3, TAD3, MRT36	Adenosine deaminase, tRNA-specific, 3	ADAT3	113179	ENSG00000213638		Mental retardation, autosomal recessive 36, 615286 (3), Autosomal recessive	Adat3 (MGI:1924344)
chr19	1905213	1926016	19p13.3	19p13.3	613764	SCAMP4	Secretory carrier membrane protein 4	SCAMP4	113178	ENSG00000227500			Scamp4 (MGI:1928947)
chr19	1941148	1981337	19p13.3	19p13.3	602214	CSNK1G2	Casein kinase 1, gamma-2	CSNK1G2	1455	ENSG00000133275			Csnk1g2 (MGI:1920014)
chr19	2037470	2051277	19p13.3	19p13.3	605069	MKNK2, MNK2, GPRK7	Mitogen-activated protein kinase-interacting serine/threonine kinase-2	MKNK2	2872	ENSG00000099875			Mknk2 (MGI:894279)
chr19	2100987	2151625	19p13.3	19p13.3	607246	AP3D1, HPS10	Adaptor-related protein complex 3, delta-1 subunit	AP3D1	8943	ENSG00000065000	mutation identified in 1 HPS10 patient	?Hermansky-Pudlak syndrome 10, 617050 (3), Autosomal recessive	Ap3d1 (MGI:107734)
chr19	2163962	2232577	19p13.3	19p13.3	607375	DOT1L, DOT1, KIAA1814	Dot1, yeast, homolog of	DOT1L	84444	ENSG00000104885			Dot1l (MGI:2143886)
chr19	2229951	2236723	19p13.3	19p13.3	617834	PLEKHJ1, GNRPX	Pleckstrin homology domain-containing protein, family J, member 1	PLEKHJ1	55111	ENSG00000104886			Plekhj1 (MGI:1925920)
chr19	2236816	2248678	19p13.3-p13.2	19p13.3	600796	SF3A2, SAP62, PRP11	Splicing factor 3a, subunit 2, 66kD	SF3A2	8175	ENSG00000104897			
chr19	2249278	2252072	19p13.3-p13.2	19p13.3	600957	AMH, MIF	Anti-Mullerian hormone	AMH	268	ENSG00000104899		Persistent Mullerian duct syndrome, type I, 261550 (3), Autosomal recessive	Amh (MGI:88006)
chr19	2252250	2260812	19p13.3	19p13.3	608743	JSRP1, JP45	Junctional sarcoplasmic reticulum protein 1	JSRP1	126306	ENSG00000167476			Jsrp1 (MGI:1916700)
chr19	2269485	2273487	19p13.3	19p13.3	601579	OAZ1	Ornithine decarboxylase antizyme 1	OAZ1	4946	ENSG00000104904			Oaz1 (MGI:109433)
chr19	2289774	2308156	19p13.3	19p13.3	609792	LRRN6B, LINGO3, LERN2	Leucine-rich repeat protein, neuronal, 6B	LINGO3	645191	ENSG00000220008			Lingo3 (MGI:3609246)
chr19	2321520	2328629	19p13.3	19p13.3	607287	LSM7	LSM7 protein	LSM7	51690	ENSG00000130332			Lsm7 (MGI:1913344)
chr19	2328570	2355101	19p13.3	19p13.3	608239	SNPPL2B, IMP4, KIAA1532	Signal peptide peptidase-like 2B	SPPL2B	56928	ENSG00000005206			Sppl2b (MGI:1920468)
chr19	2385253	2426260	19p13.3	19p13.3	610477	TMPRSS9	Transmembrane protease, serine 9	TMPRSS9	360200	ENSG00000178297			Tmprss9 (MGI:3612246)
chr19	2425623	2427915	19p13.3	19p13.3	607383	TIMM13	Translocase of inner mitochondrial membrane 13, yeast, homolog of	TIMM13	26517	ENSG00000099800			Timm13 (MGI:1353432)
chr19	2428164	2456967	19p13.3	19p13.3	150341	LMNB2, LMN2, EPM9	Lamin B2	LMNB2	84823	ENSG00000176619	mutation identified in 1 EPM9 family	?Epilepsy, progressive myoclonic, 9, 616540 (3), Autosomal recessive; {Lipodystrophy, partial, acquired, susceptibility to}, 608709 (3), Autosomal dominant	Lmnb2 (MGI:96796)
chr19	2476124	2478258	19p13.3	19p13.3	604948	GADD45B, MYD118	Growth arrest- and DNA damage-inducible gene 45, beta	GADD45B	4616	ENSG00000099860			Gadd45b (MGI:107776)
chr19	2714566	2721391	19p13.3	19p13.3	607862	DIRAS1, RIG	DIRAS family, GTP-binding Ras-like protein 1	DIRAS1	148252	ENSG00000176490			Diras1 (MGI:2183442)
chr19	2732523	2740075	19p13.3	19p13.3	612168	SLC39A3, ZIP3	Solute carrier family 39, zinc transporter, member 3	SLC39A3	29985	ENSG00000141873			Slc39a3 (MGI:2147269)
chr19	2754713	2783355	19p13	19p13.3	603419	SGTA, SGT	Small glutamine-rich tetratricopeptide repeat-containing protein, alpha	SGTA	6449	ENSG00000104969			Sgta (MGI:1098703)
chr19	2785459	2813603	19p13.3	19p13.3	601117	THOP1	Thimet oligopeptidase-1	THOP1	7064	ENSG00000172009			Thop1 (MGI:1354165)
chr19	2933217	2944970	19p	19p13.3	194551	ZNF77	Zinc finger protein-77 (pT1)	ZNF77	58492	ENSG00000175691			
chr19	2977409	2995183	19p13.3	19p13.3	612399	TLE6, GRG6, PREMBL	Transducin-like enhancer of split 6	TLE6	79816	ENSG00000104953		Preimplantation embryonic lethality, 616814 (3), Autosomal recessive	Tle6 (MGI:2149593)
chr19	2997637	3047634	19p13.3	19p13.3	601041	TLE2, ESG2	Transducin-like enhancer of split 2 (homolog of Drosophila E(spl))	TLE2	7089	ENSG00000065717			Tle2 (MGI:104635)
chr19	3052909	3063106	19p13.3	19p13.3	600188	AES	Amino-terminal enhancer of split	AES	166	ENSG00000104964			Aes (MGI:95806)
chr19	3094409	3124001	19p13	19p13.3	139313	GNA11, HHC2, HYPOC2	Guanine nucleotide-binding protein, Gq class, GNA11	GNA11	2767	ENSG00000088256		Hypocalcemia, autosomal dominant 2, 615361 (3), Autosomal dominant; Hypocalciuric hypercalcemia, type II, 145981 (3), Autosomal dominant	Gna11 (MGI:95766)
chr19	3136031	3163768	19p13	19p13.3	139314	GNA15, GNA16	Guanine nucleotide-binding protein (G protein) alpha 15 (Gq class)	GNA15	2769	ENSG00000060558			Gna15 (MGI:95770)
chr19	3178737	3180331	19p13.3	19p13.3	603751	S1PR4, EDG6, S1P4	Sphingosine-1-phosphate receptor 4	S1PR4	8698	ENSG00000125910			S1pr4 (MGI:1333809)
chr19	3224675	3297075	19p13	19p13.3	612680	CELF5, BRUNOL5	CUGbp- and ELAV-like family, member 5	CELF5	60680	ENSG00000161082			Celf5 (MGI:2442333)
chr19	3359562	3469216	19p13.3	19p13.3	600729	NFIC	Nuclear factor I/C (CCAAT-binding transcription factor)	NFIC	4782	ENSG00000141905	order: cen-NFIX-NFIC-tel		Nfic (MGI:109591)
chr19	3490820	3500939	19p13.3	19p13.3	611262	DOHH, HLRC1	Deoxyhypusine hydroxylase	DOHH	83475	ENSG00000129932			Dohh (MGI:1915964)
chr19	3506262	3536756	19p13.3	19p13.3	603619	HCDH, FZR	CDH1/HCT1, S. cerevisiae, homolog of	FZR1	51343	ENSG00000105325			Fzr1 (MGI:1926790)
chr19	3538269	3557591	19p13.3	19p13.3	617745	MFSD12, PP3501	Major facilitator superfamily domain-containing protein 12	MFSD12	126321	ENSG00000161091			Mfsd12 (MGI:3604804)
chr19	3572915	3579082	19p13.3	19p13.3	605535	HMG20B, BRAF35	High mobility group protein 20B	HMG20B	10362	ENSG00000064961			Hmg20b (MGI:1341190)
chr19	3585530	3593540	19p13.3	19p13.3	608792	GIPC3, DFNB15, DFNB72, DFNB95	GAIP C-terminus-interacting protein 3	GIPC3	126326	ENSG00000179855		Deafness, autosomal recessive 15, 601869 (3), Autosomal recessive	Gipc3 (MGI:2387006)
chr19	3594505	3608748	19p13.3	19p13.3	188070	TBXA2R, BDPLT13	Thromboxane A2 receptor	TBXA2R	6915	ENSG00000006638		{Bleeding disorder, platelet-type, 13, susceptibility to}, 614009 (3), Autosomal dominant	Tbxa2r (MGI:98496)
chr19	3630180	3700491	19p13.3	19p13.3	606102	PIP5K1C, LCCS3	Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma	PIP5K1C	23396	ENSG00000186111		Lethal congenital contractural syndrome 3, 611369 (3), Autosomal recessive	Pip5k1c (MGI:1298224)
chr19	3708336	3750812	19p13.3	19p13.3	612689	TJP3, ZO3	Tight junction protein 3	TJP3	27134	ENSG00000105289			Tjp3 (MGI:1351650)
chr19	3750772	3761695	19p13.3	19p13.3	604262	APBA3, X11L2, MINT3	Amyloid beta A4 precursor protein-binding, family A, member 3	APBA3	9546	ENSG00000011132			Apba3 (MGI:1888527)
chr19	3762666	3767564	19p13.3	19p13.3	611858	MRPL54	Mitochondrial ribosomal protein L54	MRPL54	116541	ENSG00000183617			Mrpl54 (MGI:1913297)
chr19	3769088	3772220	19p13.3	19p13.3	610362	RAX2, RAXL1, QRX, CORD11, ARMD6	Retina and anterior neural fold homeobox 2	RAX2	84839	ENSG00000173976	mutation identified in 1 ARMD6 patient	Cone-rod dystrophy 11, 610381 (3), Autosomal dominant; ?Macular degeneration, age-related, 6, 613757 (3)	
chr19	3777968	3801811	19p13.3	19p13.3	600038	MATK, HYL, CTK	Megakaryocyte-associated tyrosine kinase	MATK	4145	ENSG00000007264			Matk (MGI:99259)
chr19	3880619	3928081	19p13.3	19p13.3	608179	ATCAY, CLAC, KIAA1872	Caytaxin	ATCAY	85300	ENSG00000167654		Ataxia, cerebellar, Cayman type, 601238 (3), Autosomal recessive	Atcay (MGI:2448730)
chr19	3958452	3971122	19q13.3	19p13.3	603289	ZIPK	ZIP kinase	DAPK3	1613	ENSG00000167657			Dapk3 (MGI:1203520)
chr19	3976055	3985462	19pter-q12	19p13.3	130610	EEF2, EF2, SCA26	Eukaryotic translation elongation factor-2	EEF2	1938	ENSG00000167658	mutation identified in 1 family	?Spinocerebellar ataxia 26, 609306 (3), Autosomal dominant	Eef2 (MGI:95288)
chr19	4007597	4039385	19p13.3	19p13.3	605989	PIAS4, PIASY	Protein inhibitor of activated STAT4	PIAS4	51588	ENSG00000105229			Pias4 (MGI:2136940)
chr19	4043303	4066944	19p13.3	19p13.3	605878	ZBTB7A, FBI1, LRF	Zinc finger and BTB domain containing 7A	ZBTB7A	51341	ENSG00000178951			Zbtb7a (MGI:1335091)
chr19	4090320	4124183	19p13.3	19p13.3	601263	MAP2K2, PRKMK2, MEK2, MKK2, CFC4	Mitogen-activated protein kinase kinase 2	MAP2K2	5605	ENSG00000126934	previously assigned to 7q32	Cardiofaciocutaneous syndrome 4, 615280 (3)	Map2k2 (MGI:1346867)
chr19	4153600	4173053	19p13.3	19p13.3	611998	CREB3L3, CREBH	cAMP responsive element-binding protein 3-like 3	CREB3L3	84699	ENSG00000060566			Creb3l3 (MGI:2384786)
chr19	4174108	4182603	19p13.3	19p13.3	606211	SIRT6, SIR2L6	Sirtuin 6 (Sir2, S. cerevisiae, homolog of, 6)	SIRT6	51548	ENSG00000077463			Sirt6 (MGI:1354161)
chr19	4229195	4237538	19p13.3	19p13.3	605816	EBI3	Epstein-Barr virus-induced gene 3	EBI3	10148	ENSG00000105246			Ebi3 (MGI:1354171)
chr19	4278600	4290722	19p13.3	19p13.3	610481	SHD	SH2 domain-containing protein D	SHD	56961	ENSG00000105251			Shd (MGI:1099461)
chr19	4292226	4302438	19p13.3	19p13.3	614715	TMIGD2, IGPR1	Transmembrane and immunoglobulin domains-containing protein 2 `	TMIGD2	126259	ENSG00000167664			
chr19	4304593	4323845	19p13.3	19p13.3	609828	FSD1, GLFND	Fibronectin type 3 and SPRY domains-containing protein 1	FSD1	79187	ENSG00000105255			Fsd1 (MGI:1934858)
chr19	4324042	4338876	19p13.3	19p13.3	607881	STAP2, BKS	Signal-transducing adaptor protein 2	STAP2	55620	ENSG00000178078			Stap2 (MGI:2147039)
chr19	4360366	4400567	19p13.3	19p13.3	601768	SH3GL1, EEN	SH3 domain GRB2-like 1 (Extra 11-19 leukemia fusion gene)	SH3GL1	6455	ENSG00000141985		Leukemia, acute myeloid, 601626 (1), Autosomal dominant	Sh3gl1 (MGI:700010)
chr19	4402595	4448321	19p13.3	19p13.3	601246	CHAF1A, CAF1B, CAF1P150	Chromatin assembly factor I, subunit A	CHAF1A	10036	ENSG00000167670			Chaf1a (MGI:1351331)
chr19	4445005	4458758	19p13	19p13.3	611946	UBXN6, UBXD1	UBX domain protein 6	UBXN6	80700	ENSG00000167671			Ubxn6 (MGI:1913780)
chr19	4472195	4502219	19p13.3	19p13.3	617884	HDGFL2, HDGFRP2	Hepatoma-derived growth factor-like protein 2	HDGFL2	84717	ENSG00000167674			Hdgfl2 (MGI:1194492)
chr19	4502179	4520284	19p13.3	19p13.3	613247	PLIN4, KIAA1881	Perilipin 4	PLIN4	729359	ENSG00000167676			Plin4 (MGI:1929709)
chr19	4522530	4535195	19p13.3	19p13.3	613248	PLIN5, LSDP5	Perilipin 5	PLIN5	440503	ENSG00000214456			Plin5 (MGI:1914218)
chr19	4537214	4540023	19p13.3	19p13.3	611289	LRG1, LRG	Leucine-rich alpha-2-glycoprotein 1	LRG1	116844	ENSG00000171236			Lrg1 (MGI:1924155)
chr19	4542587	4581483	19p13.3	19p13.3	608873	SEMA6B	Semaphorin 6B	SEMA6B	10501	ENSG00000167680			Sema6b (MGI:1202889)
chr19	4657544	4670402	19p13.3	19p13.3	606746	C19orf10, SF20, IL25	Stroma-derived growth factor 20	MYDGF	56005	ENSG00000074842			Mydgf (MGI:2156020)
chr19	4724069	4724140	19p13.3	19p13.3	615303	TRNAG3	Transfer RNA glycine 3	TRG-TCC1-1	7197				
chr19	4724634	4724706	19p13.3	19p13.3	615304	TRNAV32	Transfer RNA valine 32	TRV-CAC3-1	100189416				
chr19	4791715	4795558	19p13.3	19p13.3	613538	FEM1A	Fem1, C. elegans, homolog of, A	FEM1A	55527	ENSG00000141965			Fem1a (MGI:1335089)
chr19	4815923	4831741	19p13.3	19p13.3	607601	TICAM1, TRIF, IIAE6	TIR domain-containing adaptor molecule 1	TICAM1	148022	ENSG00000127666		{Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 6}, 614850 (3), Autosomal recessive, Autosomal dominant	Ticam1 (MGI:2147032)
chr19	4838333	4867767	19p13.3	19p13.3	602702	PLIN3, M6PRBP1, TIP47	Perilipin 3	PLIN3	10226	ENSG00000105355			Plin3 (MGI:1914155)
chr19	4903079	4962153	19p13.3	19p13.3	607990	UHRF1, ICBP90, NP95	Ubiquitin-like protein containing PHD and RING finger domains 1	UHRF1	29128	ENSG00000276043			Uhrf1 (MGI:1338889)
chr19	4969086	5153602	19p13.3	19p13.3	609765	KDM4B, JMJD2B, KIAA0876	Lysine-specific demethylase 4B	KDM4B	23030	ENSG00000127663			Kdm4b (MGI:2442355)
chr19	5205502	5340802	19p13.3	19p13.3	601576	PTPRS	Protein tyrosine phosphatase, receptor type, sigma	PTPRS	5802	ENSG00000105426			Ptprs (MGI:97815)
chr19	5455414	5456855	19p13.3	19p13.3	612063	ZNRF4, SPERIZIN	Zinc finger and ring finger protein 4	ZNRF4	148066	ENSG00000105428			Znrf4 (MGI:1341258)
chr19	5558166	5568033	19p13.3	19p13.3	615241	TINCR	Terminal differentiation-induced noncoding RNA	TINCR	257000				
chr19	5586992	5622926	19p13.3	19p13.3	608066	SAFB2, KIAA0138	Scaffold attachment factor B2	SAFB2	9667	ENSG00000130254			Safb2 (MGI:2146808)
chr19	5623034	5668477	19p13.3-p13.2	19p13.3	602895	SAFB, HET	Scaffold attachment factor B	SAFB	6294	ENSG00000160633			Safb (MGI:2146974)
chr19	5678413	5680895	19p13.3	19p13.3	616658	C19orf70, MIC13, QIL1	Chromosome 19 open reading frame 70	C19orf70	125988	ENSG00000174917			2410015M20Rik (MGI:2442174)
chr19	5690260	5691666	19p13.3	19p13.3	617893	RPL36	Ribosomal protein L36	RPL36	25873	ENSG00000130255			Rpl36-ps12 (MGI:3782787)
chr19	5691833	5720451	19p13.2	19p13.3	605490	LONP1, PRSS15, LON, CODASS	lon peptidase 1, mitochondrial	LONP1	9361	ENSG00000196365		CODAS syndrome, 600373 (3), Autosomal recessive	Lonp1 (MGI:1921392)
chr19	5720155	5778733	19p13.3	19p13.3	617490	CATSPERD, TMEM146	Cation channel, sperm-associated, auxiliary subunit delta	CATSPERD	257062	ENSG00000174898			Catsperd (MGI:2147030)
chr19	5805386	5828323	19p13.3	19p13.3	602018	NRTN, NTN	Neurturin	NRTN	4902	ENSG00000171119			Nrtn (MGI:108417)
chr19	5830625	5840018	19p13.3	19p13.3	136836	FUT6	Fucosyltransferase 6 (alpha (1,3) fucosyltransferase)	FUT6	2528	ENSG00000156413	in cluster with FUT3, FUT5	Fucosyltransferase 6 deficiency, 613852 (3)	
chr19	5842887	5851473	19p13.3	19p13.3	111100	FUT3, LE	Fucosyltransferase 3	FUT3	2525	ENSG00000171124	cen-FUT5-23kb-FUT3-14kb-FUT6-ter	[Blood group, Lewis] (3)	
chr19	5865825	5870539	19p13.3	19p13.3	136835	FUT5	Fucosyltransferase 5 (alpha (1,3) fucosyltransferase)	FUT5	2527	ENSG00000130383	cen-FUT5-FUT3-FUT6-ter		
chr19	5891275	5904012	19p13.3	19p13.3	612638	NDUFA11	NADH-dehydrogenase 1 alpha subcomplex, 11	NDUFA11	126328	ENSG00000174886		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufa11,Gm4943 (MGI:3645174,MGI:1917125)
chr19	5904840	5910251	19p13.3	19p13.3	617204	VMAC	Vimentin-type intermediate filament-associated coiled-coil protein	VMAC	400673	ENSG00000187650			Vmac (MGI:2146912)
chr19	5913643	5916210	19p13.3	19p13.3	114212	CAPS	Calcyphosine	CAPS	828	ENSG00000105519			
chr19	5916138	5978308	19p13.3	19p13.3	603327	RANBP3	RAN-binding protein-3	RANBP3	8498	ENSG00000031823			Ranbp3 (MGI:1919060)
chr19	5993163	6110652	19p13.3-p13.2	19p13.3	142765	RFX2	Regulatory factor (trans-acting) 2 (influences HLA class II expression)	RFX2	5990	ENSG00000087903			Rfx2 (MGI:106583)
chr19	6135632	6193102	19p13.3	19p13.3	614363	ACSBG2, BGR	Acyl-CoA synthetase, bubblegum family, member 2	ACSBG2	81616	ENSG00000130377			Acsbg2 (MGI:3587728)
chr19	6210380	6279947	19p13.3	19p13.3	159556	MLLT1, ENL	Myeloid/lymphoid or mixed-lineage leukemia, translocated to, 1	MLLT1	4298	ENSG00000130382	fuses with ALL1		Mllt1 (MGI:1927238)
chr19	6306141	6360367	19p13.3	19p13.3	613491	ACER1	Alkaline ceraminidase 1	ACER1	125981	ENSG00000167769			Acer1 (MGI:2181962)
chr19	6361451	6368903	19p13.3	19p13.3	601119	CLPP, PRLTS3, DFNB81	ATP-dependent protease ClpAP, E. coli, proteolytic subunit, homolog of	CLPP	8192	ENSG00000125656		Perrault syndrome 3, 614129 (3), Autosomal recessive	Clpp (MGI:1858213)
chr19	6372432	6375249	19p13.3	19p13.3	613305	ALKBH7, ABH7	AlkB, E. coli, homolog of, 7	ALKBH7	84266	ENSG00000125652			Alkbh7 (MGI:1913650)
chr19	6375147	6375915	19p13.3	19p13.3	602921	PSPN	Persephin	PSPN	5623	ENSG00000125650			Pspn (MGI:1201684)
chr19	6379568	6393279	19p13.3	19p13.3	189968	GTF2F1, RAP74	General transcription factor IIF, polypeptide 1 (74kD subunit)	GTF2F1	2962	ENSG00000125651			Gtf2f1 (MGI:1923848)
chr19	6413103	6424810	19p13.3	19p13.3	603445	KHSRP, KSRP, FUBP2, FBP2	KH-type splicing regulatory protein	KHSRP	8570	ENSG00000088247			Khsrp (MGI:1336214)
chr19	6426036	6436266	19p13.3	19p13.3	610822	SLC25A41	Solute carrier family 25, member 41	SLC25A41	284427	ENSG00000181240			Slc25a41 (MGI:2144215)
chr19	6463776	6467220	19p13.3	19p13.3	609737	CRB3	Crumbs, Drosophila, homolog of, 3	CRB3	92359	ENSG00000130545			
chr19	6467203	6481807	19p13.3	19p13.3	613634	DENND1C	DENN/MADD domain-containing protein 1C	DENND1C	79958	ENSG00000205744			Dennd1c (MGI:1918035)
chr19	6494318	6502847	19p13.3	19p13.3	602662	TUBB4A, DYT4, HLD6	Tubulin, beta-4A	TUBB4A	10382	ENSG00000104833		Dystonia 4, torsion, autosomal dominant, 128101 (3), Autosomal dominant; Leukodystrophy, hypomyelinating, 6, 612438 (3), Autosomal dominant	Tubb4a (MGI:107848)
chr19	6530998	6535927	19p13.3	19p13.3	606182	TNFSF9	Tumor necrosis factor ligand superfamily, member 9	TNFSF9	8744	ENSG00000125657			
chr19	6581645	6591151	19p13	19p13.3	602840	TNFSF7, CD70, CD27L	Tumor necrosis factor ligand superfamily, member 7 (CD70 antigen)	CD70	970	ENSG00000125726			Cd70 (MGI:1195273)
chr19	6658125	6670594	19p13.3	19p13.3	604520	TNFSF14, HVEML	Tumor necrosis factor ligand superfamily, member 14	TNFSF14	8740	ENSG00000125735			Tnfsf14 (MGI:1355317)
chr19	6677834	6720681	19p13.3-p13.2	19p13.3	120700	C3, ARMD9, AHUS5	Complement component-3	C3	718	ENSG00000125730	LE ~7cM in males vs. C3 RFLP	C3 deficiency, 613779 (3), Autosomal recessive; {Hemolytic uremic syndrome, atypical, susceptibility to, 5}, 612925 (3), Autosomal dominant; {Macular degeneration, age-related, 9}, 611378 (3)	C3 (MGI:88227)
chr19	6739681	6751525	19p13.3	19p13.3	604504	TRIP10, CIP4	Thyroid hormone receptor interactor 10	TRIP10	9322	ENSG00000125733			Trip10 (MGI:2146901)
chr19	6772667	6857365	19p13.3-p13.2	19p13.3	164875	VAV1, VAV	Oncogene VAV1	VAV1	7409	ENSG00000141968	close to INSR		Vav1 (MGI:98923)
chr19	6887548	6940452	19p13.3	19p13.3-p13.2	600493	ADGRE1, EMR1	Adhesion G protein-coupled receptor E1	ADGRE1	2015	ENSG00000174837			Adgre1 (MGI:106912)
chr19	6900000	50900000	19p13.2-q13.3		164953	LPSA, D19S381E	Oncogene liposarcoma (DNA segment, single copy, expressed, probes MC15, MC6)		8177			Liposarcoma (1)	
chr19	6900000	12600000	19p13.2		614223	NRCLP6	Narcolepsy 6		100689216		associated with rs2305795	Narcolepsy 6, 614223 (2)	
chr19	6900000	19900000	19p13.2-p13.1		607324	PAPA3	Polydactyly, postaxial, type A3		338333		between D19S1165 and D19S929	Polydactyly, postaxial, type A3, 607324 (2)	
chr19	6900000	12600000	19p13.2		184700	PCOS1, PCO1, PCO	Polycystic ovary syndrome 1	PCOS1	5120		max lod at D19S884	Polycystic ovary syndrome 1, 184700 (2), Autosomal dominant	
chr19	6900000	12600000	19p13.2		603386	TCO	Thyroid carcinoma, nonmedullary, with cell oxyphilia		50975			Thyroid carcinoma, nonmedullary, with cell oxyphilia, 603386 (2)	
chr19	6952499	6990845	19p13.3	19p13.2	612305	ADGRE4P, EMR4, GPR127, EMR4P, FIRE	Adhesion G protein-coupled receptor E4, pseudogene	ADGRE4P	326342				
chr19	7049339	7051734	19p13.2	19p13.2	607964	MBD3L2	Methyl-CpG binding domain protein 3-like 2	MBD3L2	125997	ENSG00000230522			Mbd3l2 (MGI:2158460)
chr19	7112254	7294404	19p13.2	19p13.2	147670	INSR, HHF5	Insulin receptor	INSR	3643	ENSG00000171105	1 gene for alpha and beta subunits	Diabetes mellitus, insulin-resistant, with acanthosis nigricans, 610549 (3); Hyperinsulinemic hypoglycemia, familial, 5, 609968 (3), Autosomal dominant; Leprechaunism, 246200 (3), Autosomal recessive; Rabson-Mendenhall syndrome, 262190 (3), Autosomal recessive	Insr (MGI:96575)
chr19	7348900	7476989	19p13.2	19p13.2	616432	ARHGEF18, KIAA0521, RP78	Rho guanine nucleotide exchange factor 18	ARHGEF18	23370	ENSG00000268861		Retinitis pigmentosa 78, 617433 (3), Autosomal recessive	Arhgef18 (MGI:2142567)
chr19	7476869	7494976	19p13.3	19p13.2	607583	PEX11G	Peroxisome biogenesis factor 11G	PEX11G	92960	ENSG00000104883			Pex11g (MGI:1920905)
chr19	7522609	7534008	19p13.3-p13.2	19p13.2	605248	MCOLN1, ML4	Mucolipin 1	MCOLN1	57192	ENSG00000090674		Mucolipidosis IV, 252650 (3), Autosomal recessive	Mcoln1 (MGI:1890498)
chr19	7534151	7561766	19p13.3	19p13.2	603197	PNPLA6, NTE, SPG39, NTEMND, BNHS, LNMS, OMCS	Patatin-like phospholipase domain-containing protein 6	PNPLA6	10908	ENSG00000032444	mutation identified in 1 LMNS family	Boucher-Neuhauser syndrome, 215470 (3), Autosomal recessive; ?Laurence-Moon syndrome, 245800 (3), Autosomal recessive; Oliver-McFarlane syndrome, 275400 (3), Autosomal recessive; Spastic paraplegia 39, autosomal recessive, 612020 (3), Autosomal recessive	Pnpla6 (MGI:1354723)
chr19	7595901	7618309	19p13.2	19p13.2	612685	CAMSAP3, NEZHA, KIAA1543	Calmodulin-regulated spectrin-associated protein 3	CAMSAP3	57662	ENSG00000076826			Camsap3 (MGI:1916947)
chr19	7619524	7629552	19p13.2	19p13.2	610850	XAB2	XPA-binding protein 2	XAB2	56949	ENSG00000076924			Xab2 (MGI:1914689)
chr19	7629784	7631623	19p13.2	19p13.2	614770	PET100, C19orf79	PET100, S. cerevisiae, homolog of	PET100	100131801	ENSG00000229833		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Pet100 (MGI:3615306)
chr19	7637100	7647873	19p13.3-p13.2	19p13.2	601717	STXBP2, UNC18B, FHL5	Syntaxin binding protein 2	STXBP2	6813	ENSG00000076944		Hemophagocytic lymphohistiocytosis, familial, 5, 613101 (3)	Stxbp2 (MGI:107370)
chr19	7669085	7670453	19p13.2	19p13.2	605565	RETN, RSTN, FIZZ3	Resistin	RETN	56729	ENSG00000104918		{Diabetes mellitus, noninsulin-dependent, susceptibility to}, 125853 (3), Autosomal dominant; {Hypertension, insulin resistance-related, susceptibility to}, 125853 (3), Autosomal dominant	Retn (MGI:1888506)
chr19	7677056	7679832	19p13.3	19p13.2	609565	MCEMP1	Mast cell-expressed membrane protein 1	MCEMP1	199675	ENSG00000183019			Mcemp1 (MGI:1916439)
chr19	7688756	7702754	19p13.3	19p13.2	151445	FCER2, FCE2, CD23, CLEC4J	Fc fragment of IgE, low affinity II, receptor for (CD23A)	FCER2	2208	ENSG00000104921			Fcer2a (MGI:95497)
chr19	7728956	7732180	19p13.3	19p13.2	616256	CLEC4G, LSECTIN	C-type lectin domain family 4, member G	CLEC4G	339390	ENSG00000182566			Clec4g (MGI:1923113)
chr19	7739992	7747608	19p13.3	19p13.2	604672	CD209, CDSIGN	CD209 antigen	CD209	30835	ENSG00000090659		{Dengue fever, protection against}, 614371 (3); {HIV type 1, susceptibility to}, 609423 (3); {Mycobacterium tuberculosis, susceptibility to}, 607948 (3)	Cd209e (MGI:2157948)
chr19	7763051	7770558	19p13.3	19p13.2	605872	CLEC4M, CD209L, LSIGN, DCSIGNR	C-type lectin domain family 4, member M	CLEC4M	10332	ENSG00000104938		SARS infection, protection against, 605872 (2)	Cd209a (MGI:2157942)
chr19	7888504	7902022	19p13.2	19p13.2	612891	LRRC8E	Leucine-rich repeat-containing protein 8E	LRRC8E	80131	ENSG00000171017			Lrrc8e (MGI:1919517)
chr19	7903779	7914482	19p13.2	19p13.2	603014	MAP2K7, PRKMK7, MKK7, JNKK2, MAPKK7	Mitogen-activated protein kinase kinase 7	MAP2K7	5609	ENSG00000076984			Map2k7 (MGI:1346871)
chr19	7920308	7923250	19p13.2	19p13.2	605076	SNAPC2, SNAP45	Small nuclear RNA-activating protein complex, polypeptide 2	SNAPC2	6618	ENSG00000104976			Snapc2 (MGI:1914861)
chr19	7924495	7926165	19p13.2	19p13.2	600135	CTXN1, CTXN	Cortexin 1	CTXN1	404217	ENSG00000178531			Ctxn1 (MGI:88566)
chr19	7926717	7943822	19p13.3-p13.2	19p13.2	605058	TIMM44	Translocase of inner mitochondrial membrane 44, yeast, homolog of	TIMM44	10469	ENSG00000104980			Timm44 (MGI:1343262)
chr19	7958572	8005644	19p13.2	19p13.2	603466	ELAVL1, HUR	Embryonic lethal, abnormal vision, Drosophila, homolog-like 1	ELAVL1	1994	ENSG00000066044			Elavl1 (MGI:1100851)
chr19	8052317	8062662	19p13.2	19p13.2	602565	CCL25, SCYA25, TECK	Chemokine, C-C motif, ligand 25	CCL25	6370	ENSG00000131142			Ccl25 (MGI:1099448)
chr19	8209328	8262432	19p13.2	19p13.2	615334	CERS4, LASS4, TRH1	Ceramide synthase 4	CERS4	79603	ENSG00000090661			Cers4 (MGI:1914510)
chr19	8302126	8308355	19p13.2	19p13.2	606475	CD320, 8D6, 8D6A, TCBLR	CD320 molecule	CD320	51293	ENSG00000167775		Methylmalonic aciduria, transient, due to transcobalamin receptor defect, 613646 (3)	Cd320 (MGI:1860083)
chr19	8308602	8321412	19p13.2	19p13.2	602139	NDUFA7	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 7 (14.5kD, B14.5a)	NDUFA7	4701	ENSG00000267855	previously assigned to 20p13		Ndufa7 (MGI:1913666)
chr19	8321499	8322395	19p13.2	19p13.2	603685	RPS28, DBA15	Ribosomal protein S28	RPS28	6234	ENSG00000233927		Diamond Blackfan anemia 15 with mandibulofacial dysostosis, 606164 (3), Autosomal dominant	Rps28 (MGI:1859516)
chr19	8322583	8343261	19p13.2	19p13.2	614611	KANK3	KN motif- and ankyrin repeat domain-containing protein 3	KANK3	256949	ENSG00000186994			Kank3 (MGI:1098615)
chr19	8364126	8374374	19p13.3	19p13.2	605910	ANGPTL4, PGAR, HFARP, FIAF, TGQTL	Angiopoietin-like 4	ANGPTL4	51129	ENSG00000167772		Plasma triglyceride level QTL, low, 615881 (3), Autosomal dominant	Angptl4 (MGI:1888999)
chr19	8390320	8404433	19p13.2	19p13.2	604198	RAB11B, NDAGSCW	Ras-associated protein RAB11B	RAB11B	9230	ENSG00000185236		Neurodevelopmental disorder with ataxic gait, absent speech, and decreased cortical white matter, 617807 (3)	Rab11b (MGI:99425)
chr19	8413271	8439020	19p13.2	19p13.2	613332	MARCH2	Membrane-associated RING-CH finger protein 2	MARCH2	51257	ENSG00000099785			March2 (MGI:1925915)
chr19	8444574	8489117	19p13.3-p13.2	19p13.2	160994	HNRPM, HNRPM4, NAGR1	Heterogeneous nuclear ribonucleoprotein M	HNRNPM	4670	ENSG00000099783			Hnrnpm (MGI:1926465)
chr19	8520789	8577446	19p13.3-p13.2	19p13.2	601480	MYO1F	Myosin IF	MYO1F	4542	ENSG00000142347			Myo1f (MGI:107711)
chr19	8580239	8610734	19p13.3-p13.2	19p13.2	608990	ADAMTS10, WMS1	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 10	ADAMTS10	81794	ENSG00000142303		Weill-Marchesani syndrome 1, recessive, 277600 (3), Autosomal recessive	Adamts10 (MGI:2449112)
chr19	8842592	8843339	19p13.2	19p13.2	607963	MBD3L1	Methyl-CpG binding domain protein 3-like 1	MBD3L1	85509	ENSG00000170948			Mbd3l1 (MGI:1920753)
chr19	8848839	9010389	19p13.2	19p13.2	606154	MUC16, CA125	Mucin 16	MUC16	94025	ENSG00000181143			
chr19	9140379	9163418	19p13	19p13.2	613864	ZNF317, KIAA1588	Zinc finger protein 317	ZNF317	57693	ENSG00000130803			Zfp317 (MGI:107775)
chr19	9213849	9214870	19p13.2	19p13.2	611538	OR7D4, OR19B	Olfactory receptor, family 7, subfamily D, member 4	OR7D4	125958	ENSG00000174667			Olfr39 (MGI:1313142)
chr19	9291139	9309713	19p13.2	19p13.2	609571	ZNF699, FLJ38144	Zinc finger protein 699	ZNF699	374879	ENSG00000196110			
chr19	9363019	9382616	19p13	19p13.2	601276	ZNF177	Zinc finger protein 177	ZNF177	7730	ENSG00000188629			
chr19	9412425	9435577	19p13.2	19p13.2	604751	ZNF266, HZF1	Zinc finger protein-266	ZNF266	10781	ENSG00000174652			Zfp266 (MGI:1924769)
chr19	9565656	9584543	19p	19p13.2	194628	ZNF121, D19S204	Zinc finger protein-121 (clone ZHC32)	ZNF121	7675	ENSG00000197961			
chr19	9810266	9820527	19p13.2	19p13.2	609079	FBXL12, FBL12	F-box and leucine-rich repeat protein 12	FBXL12	54850	ENSG00000127452			Fbxl12 (MGI:1354738)
chr19	9827879	9830120	19p13.2	19p13.2	606849	UBL5, HUB1	Ubiquitin-like 5	UBL5	59286	ENSG00000198258	pseudogene on 17p11.2		Ubl5 (MGI:1913427)
chr19	9835206	9849688	19p13	19p13.2	601052	PIN1, DOD	Peptidyl-prolyl cis/trans isomerase, NIMA-interacting	PIN1	5300	ENSG00000127445			Pin1 (MGI:1346036)
chr19	9853717	9936551	19p13.2	19p13.2	617492	OLFM2, NOE2	Olfactomedin 2	OLFM2	93145	ENSG00000105088			Olfm2 (MGI:3045350)
chr19	9959560	10010531	19p13.2	19p13.2	120216	COL5A3	Collagen, type V, alpha-3 polypeptide	COL5A3	50509	ENSG00000080573			Col5a3 (MGI:1858212)
chr19	10013248	10022277	19p13	19p13.2	608575	RDH8, PRRDH	Retinol dehydrogenase 8	RDH8	50700	ENSG00000080511			Rdh8 (MGI:2685028)
chr19	10086118	10093251	19p13.2	19p13.2	616808	C19orf66, RYDEN	Chromosome 19 open reading frame 66	C19orf66	55337	ENSG00000130813			A230050P20Rik (MGI:2441788)
chr19	10092336	10106406	19p13.2	19p13.2	609336	ANGPTL6, AGF	Angiopoietin-like 6	ANGPTL6	83854	ENSG00000130812			Angptl6 (MGI:1917976)
chr19	10106222	10112002	19p13	19p13.2	607793	PPAN, SSF1	Peter pan, Drosophila, homolog of	PPAN	56342	ENSG00000130810	fuses with P2RY11		Ppan (MGI:2178445)
chr19	10111520	10115388	19p13	19p13.2	602697	P2RY11	Purinergic receptor P2Y, G protein-coupled, 11	P2RY11	5032	ENSG00000244165	fuses with PPAN		
chr19	10115013	10119923	19p13.2	19p13.2	603913	EIF3G, EIF3S4	Eukaryotic translation initiation factor 3, subunit G	EIF3G	8666	ENSG00000130811			Eif3g (MGI:1858258)
chr19	10133343	10195134	19p13.3-p13.2	19p13.2	126375	DNMT1, MCMT, HSN1E, ADCADN	DNA methyltransferase 1	DNMT1	1786	ENSG00000130816		Cerebellar ataxia, deafness, and narcolepsy, autosomal dominant, 604121 (3), Autosomal dominant; Neuropathy, hereditary sensory, type IE, 614116 (3), Autosomal dominant	Dnmt1 (MGI:94912)
chr19	10221432	10231271	19p13.2	19p13.2	605111	S1PR2, EDG5, DFNB68	Sphingosine-1-phosphate receptor 2	S1PR2	9294	ENSG00000267534		Deafness, autosomal recessive 68, 610419 (3), Autosomal recessive	S1pr2 (MGI:99569)
chr19	10251961	10260059	19p13.2	19p13.2	611823	MRPL4	Mitochondrial ribosomal protein L4	MRPL4	51073	ENSG00000105364			Mrpl4 (MGI:2137210)
chr19	10270840	10286614	19p13.3-p13.2	19p13.2	147840	ICAM1	Intercellular adhesion molecule-1	ICAM1	3383	ENSG00000090339	close to Ldlr in mouse	{Malaria, cerebral, susceptibility to}, 611162 (3)	Icam1 (MGI:96392)
chr19	10286966	10288583	19p13.3	19p13.2	614088	ICAM4, CD242, LW	Intracellular adhesion molecule 4	ICAM4	3386	ENSG00000105371	close to C3, LU	[Blood group, Landsteiner-Wiener], 111250 (3)	Icam4 (MGI:1925619)
chr19	10289350	10296777	19p13.2	19p13.2	601852	ICAM5, TLCN, TLN	Intercellular adhesion molecule 5 (telencephalin)	ICAM5	7087	ENSG00000105376			Icam5 (MGI:109430)
chr19	10304802	10309556	19p13.2	19p13.2	611639	ZGLP1, GLP1	Zinc finger GATA-like protein 1	ZGLP1	100125288	ENSG00000220201			Zglp1 (MGI:3696042)
chr19	10310210	10316014	19p13.2	19p13.2	614585	FDX1L, FDX2	Ferredoxin 1-like protein	FDX2	112812	ENSG00000267673			Fdx1l (MGI:1915415)
chr19	10316211	10333637	19p13.2	19p13.2	609950	RAVER1, KIAA1978	Raver1, mouse, homolog of	RAVER1	125950	ENSG00000161847			Raver1 (MGI:1919016)
chr19	10333775	10339833	19p13.3-p13.2	19p13.2	146631	ICAM3, CDW50	Intercellular adhesion molecule-3	ICAM3	3385	ENSG00000076662			
chr19	10350527	10380571	19p13.2	19p13.2	176941	TYK2, IMD35	Tyrosine kinase 2	TYK2	7297	ENSG00000105397		Immunodeficiency 35, 611521 (3), Autosomal recessive	Tyk2 (MGI:1929470)
chr19	10391127	10403594	19p13.2	19p13.2	605065	CDC37	Cell division cycle 37, S. cerevisiae, homolog of	CDC37	11140	ENSG00000105401			Cdc37 (MGI:109531)
chr19	10416772	10469630	19p13.2	19p13.2	600126	PDE4A, DPDE2	Phosphodiesterase-4A, cAMP-specific (dunce, Drosophila, homolog phosphodiesterase E2)	PDE4A	5141	ENSG00000065989			Pde4a (MGI:99558)
chr19	10486119	10503377	19p13.2	19p13.2	606016	KEAP1, KIAA0132	Kelch-like ECH-associated protein 1	KEAP1	9817	ENSG00000079999			Keap1 (MGI:1858732)
chr19	10512741	10517991	19p13.2	19p13.2	605146	S1PR5, EDG8	Sphingosine-1-phosphate receptor 5	S1PR5	53637	ENSG00000180739			S1pr5 (MGI:2150641)
chr19	10543893	10553422	19p13.2	19p13.2	611340	ATG4D, APG4D, AUTL4	Autophagy 4, S. cerevisiae, homolog of, D	ATG4D	84971	ENSG00000130734			Atg4d (MGI:2444308)
chr19	10566461	10568978	19p13	19p13.2	600927	CDKN2D	Cyclin-dependent kinase inhibitor 2D (p19, inhibits CDK4)	CDKN2D	1032	ENSG00000129355	possible tumor suppressor		Cdkn2d (MGI:105387)
chr19	10572670	10587314	19p13.2	19p13.2	607309	AP1M2, MU1B	Adaptor-related protein complex 1, mu-2 subunit	AP1M2	10053	ENSG00000129354			Ap1m2 (MGI:1336974)
chr19	10602444	10644558	19p13.1	19p13.2	606106	SLC44A2, CTL2	Solute carrier family 44, member 2	SLC44A2	57153	ENSG00000129353			Slc44a2 (MGI:1915932)
chr19	10654260	10692418	19p13	19p13.2	603182	ILF3, NF90, DRBP76, MPHOSPH4, NFAR	Interleukin enhancer-binding factor 3	ILF3	3609	ENSG00000129351			Ilf3 (MGI:1339973)
chr19	10701435	10713366	19p13.2	19p13.2	609615	QTRT1, TGT	Queuine tRNA-ribosyltransferase 1	QTRT1	81890	ENSG00000213339			Qtrt1 (MGI:1931441)
chr19	10718052	10831909	19p13.2	19p13.2	602378	DNM2, CMTDIB, CMTDI1, CMT2M, LCCS5	Dynamin-2	DNM2	1785	ENSG00000079805	1 LCCS5 family identified with mutation	Centronuclear myopathy 1, 160150 (3), Autosomal dominant; Charcot-Marie-Tooth disease, axonal type 2M, 606482 (3), Autosomal dominant; Charcot-Marie-Tooth disease, dominant intermediate B, 606482 (3), Autosomal dominant; Lethal congenital contracture syndrome 5, 615368 (3), Autosomal recessive	Dnm2 (MGI:109547)
chr19	10817425	10817495	19p13.2	19p13.2	610719	MIR199A1, MIRN199A1	Micro RNA 199A1	MIR199A1	406976				
chr19	10832066	10836306	19p13.2	19p13.2	605395	TMED1, IL1RL1LG	Transmembrane p24 trafficking protein 1 (interleukin-1 receptor-like 1 ligand)	TMED1	11018	ENSG00000099203			Tmed1 (MGI:106201)
chr19	10871576	10923077	19p13.2	19p13.2	603934	CARM1, PRMT4	Coactivator-associated arginine methyltransferase 1	CARM1	10498	ENSG00000142453			Carm1 (MGI:1913208)
chr19	10922184	10929011	19p13.2	19p13.2	617522	YIPF2	YIP1 domain family, member 2	YIPF2	78992	ENSG00000130733			Yipf2 (MGI:1922016)
chr19	10928735	10930253	19p13.2	19p13.2	617380	TIMM29, C19orf52	Translocase of inner mitochondrial membrane 29	TIMM29	90580	ENSG00000142444			Timm29 (MGI:1917023)
chr19	10960921	11062281	19p13.2	19p13.2	603254	SMARCA4, BRG1, RTPS2, MRD16, CSS4	SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A, member 4	SMARCA4	6597	ENSG00000127616		Coffin-Siris syndrome 4, 614609 (3), Autosomal dominant; {Rhabdoid tumor predisposition syndrome 2}, 613325 (3), Autosomal dominant	Smarca4 (MGI:88192)
chr19	11089361	11133829	19p13.2	19p13.2	606945	LDLR, FHC, FH, LDLCQ2	Low density lipoprotein receptor	LDLR	3949	ENSG00000130164	~20cM distal to C3	Hypercholesterolemia, familial, 143890 (3), Autosomal dominant; LDL cholesterol level QTL2, 143890 (3), Autosomal dominant	Ldlr (MGI:96765)
chr19	11145493	11155996	19p13.2	19p13.2	609394	SPC24, SPBC24	SPC24, NDC80 kinetochore complex component	SPC24	147841	ENSG00000161888			Spc24 (MGI:1914879)
chr19	11164266	11197566	19p13.2	19p13.2	614610	KANK2, ANKRD25, KIAA1518, PPKWH, NPHS16	KN motif- and ankyrin repeat domain-containing protein 2	KANK2	25959	ENSG00000197256		Nephrotic syndrome 16, 617783 (3), Autosomal recessive; Palmoplantar keratoderma and woolly hair, 616099 (3), Autosomal recessive	Kank2 (MGI:2384568)
chr19	11199292	11262500	19p13.2	19p13.2	614194	DOCK6, KIAA1395, AOS2	Dedicator of cytokinesis 6	DOCK6	57572	ENSG00000130158		Adams-Oliver syndrome 2, 614219 (3), Autosomal recessive	Dock6 (MGI:1914789)
chr19	11239618	11241942	19p13.2	19p13.2	616223	ANGPTL8, C19orf80, LIPASIN	Angiopoietin-like protein 8	ANGPTL8	55908	ENSG00000130173	within intron of DOCK6		Angptl8 (MGI:3643534)
chr19	11296138	11326995	9q34	19p13.2	617580	TSPAN16, TM4SF16	Tetraspanin 16	TSPAN16	26526	ENSG00000130167			
chr19	11322045	11339667	19p13.2	19p13.2	604350	RAD3D, GOV	Ras family, member RAB3D	RAB3D	9545	ENSG00000105514			Rab3d (MGI:97844)
chr19	11342511	11346458	19p13.2	19p13.2	613771	TMEM205	Transmembrane protein 205	TMEM205	374882	ENSG00000105518			Tmem205 (MGI:3045495)
chr19	11374706	11376950	19p13.2	19p13.2	614536	SWSAP1, ZSWIM7AP1, C19orf39	SWIM-type zinc finger domain-containing protein 7-associated protein 1	SWSAP1	126074	ENSG00000173928			Swsap1 (MGI:1914212)
chr19	11377204	11384341	19p13.3-p13.2	19p13.2	133171	EPOR	Erythropoietin receptor	EPOR	2057	ENSG00000187266		[Erythrocytosis, familial, 1], 133100 (3), Autosomal dominant	Epor (MGI:95408)
chr19	11394055	11419341	19p13.2	19p13.2	616743	RGL3	Ral guanine nucleotide dissociation stimulator-like 3	RGL3	57139	ENSG00000205517			Rgl3 (MGI:1918996)
chr19	11420604	11435781	19p13.2	19p13.2	615956	CCDC151, CILD30	Coiled-coil domain-containing protein 151	CCDC151	115948	ENSG00000198003		Ciliary dyskinesia, primary, 30, 616037 (3), Autosomal recessive	Ccdc151 (MGI:1924859)
chr19	11435256	11450967	19p13.2-p13.1	19p13.2	177060	PRKCSH, G19P1, PCLD1	Protein kinase C substrate 80K-H	PRKCSH	5589	ENSG00000130175		Polycystic liver disease 1, 174050 (3), Autosomal dominant	Prkcsh (MGI:107877)
chr19	11451325	11481045	19p13.2	19p13.2	603458	ELAVL3, HUC, PLE21	Embryonic lethal, abnormal vision, Drosophila, homolog-like 3	ELAVL3	1995	ENSG00000196361	centromeric to ELAVL1		Elavl3 (MGI:109157)
chr19	11483426	11505922	19p13.2	19p13.2	611371	ZNF653, ZIP67	Zinc finger protein 653	ZNF653	115950	ENSG00000161914			Zfp653 (MGI:2442362)
chr19	11505915	11529171	19p13.2	19p13.2	608388	SITPEC, ECSIT	Signaling intermediate in toll pathway, evolutionarily conserved	ECSIT	51295	ENSG00000130159			Ecsit (MGI:1349469)
chr19	11538716	11550322	19p13.2	19p13.2	600806	CNN1, SMCC	Calponin 1	CNN1	1264	ENSG00000130176			Cnn1 (MGI:104979)
chr19	11574659	11579007	19p13.3-p13.1	19p13.2	171640	ACP5, SPENCDI	Acid phosphatase 5, tartrate resistant	ACP5	54	ENSG00000102575	incorrectly assigned to 15 by A	Spondyloenchondrodysplasia with immune dysregulation, 607944 (3), Autosomal recessive	
chr19	11575254	11619158	19p13.2	19p13.2	612248	ZNF627	Zinc finger protein 627	ZNF627	199692	ENSG00000198551			Zfp867 (MGI:2681848)
chr19	11887772	11980221	19p13.2	19p13.2	194543	ZNF69	Zinc finger protein-69 (Cos5)	ZNF69	7620	ENSG00000198429	previously assigned to 22q11.2		
chr19	12131349	12140406	19p13.3-p13.2	19p13.2	194557	ZNF20, KOX13	Zinc finger protein-14 (KOX 6)	ZNF20	7568	ENSG00000132010			
chr19	12163046	12189880	19p13.2-p13.12	19p13.2	604078	ZNF136	Zinc finger protein-136	ZNF136	7695	ENSG00000196646			
chr19	12224685	12294898	19p13.2	19p13.2	194542	ZNF44, KOX7	Zinc finger protein-44 (KOX7)	ZNF44	51710	ENSG00000197857	previously assigned to 16p11		
chr19	12429705	12441111	19p13.2	19p13.2	606697	ZK1	Zinc finger protein ZK1	ZNF443	10224	ENSG00000180855			Zfp709 (MGI:2384299)
chr19	12600000	13800000	19p13.13		613638	DEL19p13.13, C19DELp13.13, DUP19p13.13, C19DUPp13.13	Chromosome 19p13.13 deletion syndrome (Chromosome 19p13.13 duplication syndrome)				contiguous gene syndrome	Chromosome 19p13.13 deletion syndrome, 613638 (4); Chromosome 19p13.13 duplication syndrome, 613638 (4)	
chr19	12600000	24200000	19p13.1-p12		603985	ZNF103	Zinc finger protein-103						
chr19	12600000	24200000	19p13.1-p12		603987	ZNF105	Zinc finger protein-105						
chr19	12600000	24200000	19p13.1-p12		603988	ZNF106	Zinc finger protein-106						
chr19	12600000	24200000	19p13.1-p12		603991	ZNF109	Zinc finger protein-109						
chr19	12600000	24200000	19p13.1-p12		603992	ZNF110	Zinc finger protein-110						
chr19	12600000	24200000	19p13.1-p12		603993	ZNF111	Zinc finger protein-111						
chr19	12600000	24200000	19p13.1-p12		603995	ZNF113	Zinc finger protein-113				?13q21		
chr19	12600000	24200000	19p13.1-p12		603997	ZNF118	Zinc finger protein-118				?13q21		
chr19	12600000	24200000	19p13.1-p12		603998	ZNF119	Zinc finger protein-119						
chr19	12600000	24200000	19p13.1-p12		603999	ZNF120	Zinc finger protein-120						
chr19	12600000	24200000	19p13.1-p12		604000	ZNF122	Zinc finger protein-122						
chr19	12600000	24200000	19p13.1-p12		603976	ZNF94	Zinc finger protein-94						
chr19	12646507	12666776	19cen-q12	19p13.13	609458	MAN2B1, MANB	Mannosidase, alpha, class 2B, member 1	MAN2B1	4125	ENSG00000104774		Mannosidosis, alpha-, types I and II, 248500 (3), Autosomal recessive	Man2b1 (MGI:107286)
chr19	12666803	12675831	19p13.13	19p13.13	616850	WDR83, MORG1	WD repeat-containing protein 83	WDR83	84292	ENSG00000123154			Wdr83 (MGI:1915086)
chr19	12671954	12681886	19p13.12-p13.11	19p13.13	600944	DHPS	Deoxyhypusine synthase	DHPS	1725	ENSG00000095059			Dhps (MGI:2683592)
chr19	12688915	12696899	19p13.2	19p13.13	609074	FBXW9, FBW9	F-box and WD40 domain protein 9	FBXW9	84261	ENSG00000132004			Fbxw9 (MGI:1915878)
chr19	12699193	12723995	19p13.13	19p13.13	603002	TNPO2, TRN2, KPNB2B	Transportin 2	TNPO2	30000	ENSG00000105576			Tnpo2 (MGI:2384849)
chr19	12737458	12748323	19q13.3	19p13.13	601913	ASNA1, ARSA1	arsA arsenite transporter, ATP-binding, E. coli, homolog of, 1	ASNA1	439	ENSG00000198356			Asna1 (MGI:1928379)
chr19	12751690	12758457	19p13.2-p13.12	19p13.13	607335	BEST2, VMD2L1	Bestrophin 2	BEST2	54831	ENSG00000039987			Best2 (MGI:2387588)
chr19	12763001	12778483	19p13.13	19p13.13	607824	HOOK2, HK2	Hook, Drosophila, homolog of, 2	HOOK2	29911	ENSG00000095066			Hook2 (MGI:2181664)
chr19	12791495	12793310	19p13.2	19p13.13	165161	JUNB	jun B proto-oncogene	JUNB	3726	ENSG00000171223			Junb (MGI:96647)
chr19	12796819	12801909	19p13.2	19p13.13	600538	PRDX2, PRX2, TDPX1, PTX1, NKEFB	Peroxiredoxin 2	PRDX2	7001	ENSG00000167815	prev. mapped to chr.13		Prdx2 (MGI:109486)
chr19	12802053	12813647	19p13.13	19p13.13	606034	RNASEH2A, RNHIA, AGS4	Ribonuclease H2, large subunit	RNASEH2A	10535	ENSG00000104889		Aicardi-Goutieres syndrome 4, 610333 (3), Autosomal recessive	Rnaseh2a (MGI:1916974)
chr19	12825476	12835427	19p13	19p13.13	609553	RTBDN	Retbindin	RTBDN	83546	ENSG00000132026			Rtbdn (MGI:2443686)
chr19	12833930	12874952	19p13.2	19p13.13	612256	MAST1, SAST, KIAA0973	Microtubule-associated serine/threonine kinase 1	MAST1	22983	ENSG00000105613			Mast1 (MGI:1861901)
chr19	12875210	12881520	19p13.2-q13.4	19p13.13	126350	DNASE2, DNL	Deoxyribonuclease II, lysosomal	DNASE2	1777	ENSG00000105612			Dnase2a (MGI:1329019)
chr19	12884421	12887202	19p13.13-p13.12	19p13.13	600599	KLF1, EKLF, INLU, HBFQTL6, CDAN4	Kruppel-like factor 1, erythroid	KLF1	10661	ENSG00000105610		Blood group--Lutheran inhibitor, 111150 (3); Dyserythropoietic anemia, congenital, type IV, 613673 (3), Autosomal dominant; [Hereditary persistence of fetal hemoglobin], 613566 (3)	Klf1 (MGI:1342771)
chr19	12891128	12915344	19p13.2	19p13.13	608801	GCDH	Glutaryl-Coenzyme A dehydrogenase	GCDH	2639	ENSG00000105607		Glutaricaciduria, type I, 231670 (3), Autosomal recessive	Gcdh (MGI:104541)
chr19	12898228	12919673	19p13.13	19p13.13	611487	SYCE2, CESC1	Synaptonemal complex central element protein 2	SYCE2	256126	ENSG00000161860			Syce2 (MGI:1919096)
chr19	12938599	12944489	19p13.2	19p13.13	109091	CALR, SSA	Sicca syndrome antigen A (autoantigen Ro; calreticulin)	CALR	811	ENSG00000179218	distal to C3, near LDLR	Myelofibrosis, somatic, 254450 (3); Thrombocythemia, somatic, 187950 (3)	Calr (MGI:88252)
chr19	12945813	12953642	19p13.2	19p13.13	600061	RAD23A, HHR23A	RAD23, S. cerevisiae, homolog of, A	RAD23A	5886	ENSG00000179262			Rad23a (MGI:105126)
chr19	12954155	12957253	19p13.13	19p13.13	605162	GADD45GIP1, PRG6, CRIF1	Growth arrest- and DNA damage-inducible DABB45G-interacting protein	GADD45GIP1	90480	ENSG00000179271			Gadd45gip1 (MGI:1914947)
chr19	12969617	12974752	19p13.2-p13.13	19p13.13	609068	DAND5, CER2, CERL2, DANTE, COCO	DAN domain family, member 5	DAND5	199699	ENSG00000179284			Dand5 (MGI:1344365)
chr19	12995511	13098795	19p13.3	19p13.13	164005	NFIX, NF1A, SOTOS2, MRSHSS	Nuclear factor I/X (CCAAT-binding transcription factor)	NFIX	4784	ENSG00000008441		Marshall-Smith syndrome, 602535 (3), Autosomal dominant; Sotos syndrome 2, 614753 (3), Autosomal dominant	Nfix (MGI:97311)
chr19	13097165	13103750	19p13.2-p13.1	19p13.13	151440	LYL1	Lymphoblastic leukemia derived sequence-1	LYL1	4066	ENSG00000104903		Leukemia, T-cell acute lymphoblastoid, 151440 (2)	Lyl1 (MGI:96891)
chr19	13104899	13117566	19p13.3	19p13.13	611669	TRMT1, TRM1	tRNA methyltransferase 1, S. cerevisiae, homolog of	TRMT1	55621	ENSG00000104907			Trmt1 (MGI:1289155)
chr19	13116847	13141146	19p13.13	19p13.13	610672	NACC1, BTBD14B, NECFM	Nucleus accumbens-associated protein 1, BEN and BTB/POZ domains-containing	NACC1	112939	ENSG00000160877		Neurodevelopmental disorder with epilepsy, cataracts, feeding difficulties, and delayed brain myelination, 617393 (3), Autosomal dominant	Nacc1 (MGI:1914080)
chr19	13144057	13150373	19p13.2	19p13.13	603765	STX10, SYN10	Syntaxin 10	STX10	8677	ENSG00000104915			
chr19	13206441	13506459	19p13	19p13.13	601011	CACNA1A, CACNL1A4, SCA6, EIEE42	Calcium channel, voltage-dependent, P/Q type, alpha 1A subunit	CACNA1A	773	ENSG00000141837		Epileptic encephalopathy, early infantile, 42, 617106 (3), Autosomal dominant; Episodic ataxia, type 2, 108500 (3), Autosomal dominant; Migraine, familial hemiplegic, 1, 141500 (3), Autosomal dominant; Migraine, familial hemiplegic, 1, with progressive cerebellar ataxia, 141500 (3), Autosomal dominant; Spinocerebellar ataxia 6, 183086 (3), Autosomal dominant	Cacna1a (MGI:109482)
chr19	13764491	13774281	19p13.2	19p13.13	615105	MRI1, MRDI	Methylthioribose-1-phosphate isomerase, S. cerevisiae, homolog of	MRI1	84245	ENSG00000037757			Mri1 (MGI:1915123)
chr19	13836286	13836358	19p13.12	19p13.12	610724	MIR24-2, MIRN24-2	Micro RNA 24-2	MIR24-2	407013				
chr19	13836439	13836516	19p13.12	19p13.12	612153	MIR27, MIRN27A	Micro RNA 27A	MIR27A	407018				
chr19	13836586	13836658	19p13.13	19p13.12	607962	MIR23A, MIRN23A	Micro RNA 23a	MIR23A	407010				
chr19	13862062	13880756	19p13.13	19p13.12	608229	NANOS3, NOS3	Nanos, Drosophila, homolog of, 3	NANOS3	342977	ENSG00000187556			Nanos3 (MGI:2675387)
chr19	13874698	13874807	19p13.3	19p13.12	612746	MIR181C, MIRN181C	Micro RNA 181C	MIR181C	406957				
chr19	13906142	13930879	19p13.12	19p13.12	610055	CC2D1A, MRT3	Coiled-coil and C2 domain-containing 1A	CC2D1A	54862	ENSG00000132024		Mental retardation, autosomal recessive 3, 608443 (3), Autosomal recessive	Cc2d1a (MGI:2384831)
chr19	13961529	14007513	19p13.1	19p13.12	600006	RFX1	Regulatory factor (trans-acting) 1 (influences HLA class II expression)	RFX1	5989	ENSG00000132005			Rfx1 (MGI:105982)
chr19	14028147	14031557	19p13.3	19p13.12	606855	RLN3, H3, RXN3	Relaxin 3	RLN3	117579	ENSG00000171136			Rln3 (MGI:2158015)
chr19	14031739	14052918	19p13.11	19p13.12	605350	TCCR, WSX1	T-cell cytokine receptor	IL27RA	9466	ENSG00000104998			Il27ra (MGI:1355318)
chr19	14091687	14117746	19p13.1	19p13.12	601639	PRKACA	Protein kinase, cAMP-dependent, catalytic, alpha	PRKACA	5566	ENSG00000072062		Cushing syndrome, ACTH-independent adrenal, somatic, 615830 (3)	Prkaca (MGI:97592)
chr19	14119508	14136627	19p13.13	19p13.12	609190	ASF1B	Anti-silencing function 1, S. cerevisiae, homolog of, B	ASF1B	55723	ENSG00000105011			Asf1b (MGI:1914179)
chr19	14147736	14206244	19p13.3	19p13.12	616416	ADGRL1, LPHN1, CIRL1, CL1, LEC2, KIAA0821	Adhesion G protein-coupled receptor L1	ADGRL1	22859	ENSG00000072071			Adgrl1 (MGI:1929461)
chr19	14381143	14408724	19p13.1	19p13.12	601211	ADGRE5, CD97	Adhesion G protein-coupled receptor E5	ADGRE5	976	ENSG00000123146			Adgre5 (MGI:1347095)
chr19	14433353	14471866	19p12	19p13.12	601032	PKN1, PRKCL1, PRK1, PAK1	Protein kinase N1	PKN1	5585	ENSG00000123143			Pkn1 (MGI:108022)
chr19	14472465	14475361	19p13.1	19p13.12	176802	PTGER1	Prostaglandin E receptor 1, EP1 subtype, 42kD	PTGER1	5731	ENSG00000160951			Ptger1 (MGI:97793)
chr19	14477758	14496148	19p13.1	19p13.12	605072	RGS19IP1, C19orf3, GIPC	Regulator of G-protein signaling 19 interacting protein 1	GIPC1	10755	ENSG00000123159			Gipc1 (MGI:1926252)
chr19	14514763	14530596	19p13.2	19p13.12	604572	DNAJB1, HSPF1	DnaJ, E. coli, homolog of, subfamily B, member 1 (heat-shock 40kD protein 1)	DNAJB1	3337	ENSG00000132002			Dnajb1 (MGI:1931874)
chr19	14527751	14565979	19p13.12	19p13.12	610057	TECR, GPSN2, TER, SC2, MRT14	Trans-2,3-enoyl-CoA reductase	TECR	9524	ENSG00000099797		Mental retardation, autosomal recessive 14, 614020 (3), Autosomal recessive	Tecr (MGI:1915408)
chr19	14566077	14572076	19p13.12-p13.11	19p13.12	603842	NDUFB7	NADH-ubiquinone oxidoreductase 1 beta subcomplex, 7	NDUFB7	4713	ENSG00000099795			Ndufb7 (MGI:1914166)
chr19	14580776	14612026	19p13.12	19p13.12	616838	CLEC17A	C-type lectin domain family 17, member A	CLEC17A	388512	ENSG00000187912			
chr19	14600174	14674917	19p13.1	19p13.12	606101	EMR3	EGF-like module-containing, mucin-like hormone receptor 3	ADGRE3	84658	ENSG00000131355			
chr19	14689786	14733745	19p13.1	19p13.12	611811	ZNF333, KIAA1806	Zinc finger protein 333	ZNF333	84449	ENSG00000160961			
chr19	14732696	14778540	19p13.1	19p13.12	606100	ADGRE2, EMR2, VBU	Adhesion G protein-coupled receptor E2	ADGRE2	30817	ENSG00000127507		Vibratory urticaria, 125630 (3), Autosomal dominant	
chr19	14950032	15010642	19p13.12	19p13.12	600637	SLC1A6, EAAT4	Solute carrier family 1 (high affinity aspartate/glutamate transporter), member 6	SLC1A6	6511	ENSG00000105143			Slc1a6 (MGI:1096331)
chr19	15049479	15058292	19p13.1	19p13.12	605848	CASP14, ARCI12	Caspase 14, apoptosis-related cysteine protease	CASP14	23581	ENSG00000105141		Ichthyosis, congenital, autosomal recessive 12, 617320 (3), Autosomal recessive	Casp14 (MGI:1335092)
chr19	15107363	15114987	19p13.12	19p13.12	617377	SYDE1	Synapse defective Rho GTPase, C. elegans, homolog of, 1	SYDE1	85360	ENSG00000105137			Syde1 (MGI:1918959)
chr19	15114973	15125798	19p13.1	19p13.12	605770	ILVBL, AHAS	IlvB-like (acetolactate synthase, bacterial, homolog of)	ILVBL	10994	ENSG00000105135			Ilvbl (MGI:1351911)
chr19	15159632	15200980	19p13.2-p13.1	19p13.12	600276	NOTCH3, CADASIL1, CASIL, IMF2, LMNS	Notch, Drosophila, homolog of, 3	NOTCH3	4854	ENSG00000074181	mutation identified in 1 IMF2 family	Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy 1, 125310 (3), Autosomal dominant; Lateral meningocele syndrome, 130720 (3), Autosomal dominant; ?Myofibromatosis, infantile 2, 615293 (3), Autosomal dominant	Notch3 (MGI:99460)
chr19	15226918	15233452	19p13.12	19p13.12	617400	EPHX3, ABHD9	Epoxide hydrolase 3	EPHX3	79852	ENSG00000105131			Ephx3 (MGI:1919182)
chr19	15236835	15332542	19p13.1	19p13.12	608749	BRD4, CAP, HUNK1	Bromodomain-containing protein 4	BRD4	23476	ENSG00000141867	fused with NUT		
chr19	15353520	15379814	19p13.12	19p13.12	604692	AKAP8, AKAP95	A-kinase anchor protein 8	AKAP8	10270	ENSG00000105127			Akap8 (MGI:1928488)
chr19	15380047	15419120	19p13.12-p13.11	19p13.12	609475	AKAP8L, HA95, NAKAP, HAP95	A-kinase anchor protein 8-like protein	AKAP8L	26993	ENSG00000011243			Akap8l (MGI:1860606)
chr19	15451623	15464580	19p13.12	19p13.12	616561	RASAL3	Ras protein activator-like 3	RASAL3	64926	ENSG00000105122			Rasal3 (MGI:2444128)
chr19	15468644	15479503	19p13.12	19p13.12	608199	PGRPL	Peptidoglycan recognition protein, long	PGLYRP2	114770	ENSG00000161031			Pglyrp2 (MGI:1928099)
chr19	15508486	15552316	19p13.12	19p13.12	611495	CYP4F22, ARCI5, LI3	Cytochrome P450, family 4, subfamily F, polypeptide 22	CYP4F22	126410	ENSG00000171954		Ichthyosis, congenital, autosomal recessive 5, 604777 (3), Autosomal recessive	Cyp4f39 (MGI:2445210)
chr19	15615206	15629637	19p13.1	19p13.12	611545	CYP4F8	Cytochrome P450, family 4, subfamily F, polypeptide 8	CYP4F8	11283	ENSG00000186526			Cyp4f15 (MGI:2146921)
chr19	15640896	15661605	19p13.2	19p13.12	601270	CYP4F3, LTB4H	Cytochrome P450, subfamily IVF, polypeptide 3	CYP4F3	4051	ENSG00000186529			Cyp4f13 (MGI:2158641)
chr19	15673017	15698818	19p13.1	19p13.12	611485	CYP4F12	Cytochrome P450, family 4, subfamily F, polypeptide 12	CYP4F12	66002	ENSG00000186204			Cyp4f14 (MGI:1927669)
chr19	15828946	15836320	19p13.12	19p13.12	617500	UCA1, LINC00178, CUDR	Urothelial cancer-associated gene 1	UCA1	652995				
chr19	15878023	15898119	19p13.12	19p13.12	604426	CYP4F2	Cytochrome P450, family 4, subfamily F, polypeptide 2	CYP4F2	8529	ENSG00000186115			Cyp4f18 (MGI:1919304)
chr19	15912369	15934865	19p13.1	19p13.12	611517	CYP4F11	Cytochrome P450, family 4, subfamily F, polypeptide 11	CYP4F11	57834	ENSG00000171903			Cyp4f40 (MGI:3645508)
chr19	16067506	16103004	19p13.1	19p13.12-p13.11	600317	TPM4	Tropomyosin 4	TPM4	7171	ENSG00000167460			
chr19	16111679	16133634	19p13.2-cen	19p13.11	165040	RAB8A, MEL	Ras-associated protein RAB8A (oncogene MEL)	RAB8A	4218	ENSG00000167461			Rab8a (MGI:96960)
chr19	16185183	16192045	19p13.12	19p13.11	614554	FAM32A, OTAG12	Family with sequence similarity 32, member A	FAM32A	26017	ENSG00000105058			Fam32a (MGI:1915172)
chr19	16197853	16235344	19p13.12	19p13.11	603535	AP1M1, AP47, CLAPM2	Adaptor-related protein complex 1, mu 1 subunit	AP1M1	8907	ENSG00000072958			Ap1m1 (MGI:102776)
chr19	16324825	16328661	19p13.1	19p13.11	602016	KLF2, LKLF	Kruppel-like factor 2	KLF2	10365	ENSG00000127528			Klf2 (MGI:1342772)
chr19	16355243	16472011	19p13.11	19p13.11	616826	EPS15L1, EPS15R	EPS15-like protein 1	EPS15L1	58513	ENSG00000127527			Eps15l1 (MGI:104582)
chr19	16479056	16496191	19p13.12	19p13.11	611414	CALR3, CRT2, CMH19	Calreticulin 3	CALR3	125972	ENSG00000269058	mutation identified in 1 CMH19 patient	?Cardiomyopathy, hypertrophic, 19, 613875 (3), Autosomal dominant	Calr3 (MGI:1920566)
chr19	16574906	16628203	19p13.11	19p13.11	605043	MED26, CRSP7, CRSP70	Mediator complex subunit 26	MED26	9441	ENSG00000105085			Med26 (MGI:1917875)
chr19	16661126	16689019	19p13.11	19p13.11	611235	TMEM38A, TRICA	Transmembrane protein 38A	TMEM38A	79041	ENSG00000072954			Tmem38a (MGI:1921416)
chr19	16719525	16817962	19p13.11	19p13.11	616250	NWD1	NACHT domain- and WD repeat-containing protein 1	NWD1	284434	ENSG00000188039			Nwd1 (MGI:2442268)
chr19	16829386	16880354	19p13.11	19p13.11	607777	SIN3B, KIAA0700	Sin3, yeast, homolog of, B	SIN3B	23309	ENSG00000127511			Sin3b (MGI:107158)
chr19	16888859	16892599	19p12	19p13.11	602779	F2RL3, PAR4	Coagulation factor II, thrombin, receptor-like 3 (protease-activated receptor-4)	F2RL3	9002	ENSG00000127533			F2rl3 (MGI:1298207)
chr19	16892946	17026817	19p13.11	19p13.11	608841	CPAMD8, KIAA1283, ASGD8	Complement component 3- and pregnancy zone protein-like alpha-2-macroglobin domain-containing protein 8	CPAMD8	27151	ENSG00000160111		Anterior segment dysgenesis 8, 617319 (3), Autosomal recessive	
chr19	17049760	17075605	19p13.11	19p13.11	613434	HAUS8, DGT4, HICE1	HAUS augmin-like complex, subunit 8	HAUS8	93323	ENSG00000131351			Haus8 (MGI:1923728)
chr19	17075780	17213294	19p13.1	19p13.11	602129	MYO9B, MYR5, CELIAC4	Myosin IXB	MYO9B	4650	ENSG00000099331		{Celiac disease, susceptibility to, 4}, 609753 (3)	Myo9b (MGI:106624)
chr19	17231884	17245341	19p13.1	19p13.11	132880	NR2F6, ERBAL2, EAR2	Nuclear receptor subfamily 2, group F, member 6	NR2F6	2063	ENSG00000160113			Nr2f6 (MGI:1352453)
chr19	17250020	17264795	19p13.1	19p13.11	611810	USHBP1, MCC2	USH1C-binding protein 1	USHBP1	83878	ENSG00000130307			Ushbp1 (MGI:1922920)
chr19	17267375	17279352	19p13.11	19p13.11	612766	C10orf62, MERIT40, NBA1	Chromosome 19 open reading frame 62	BABAM1	29086	ENSG00000105393			Babam1 (MGI:1915501)
chr19	17302806	17306842	19p13.1	19p13.11	611840	MRPL34	Mitochondrial ribosomal protein L34	MRPL34	64981	ENSG00000130312			Mrpl34 (MGI:2137227)
chr19	17323222	17334833	19p13.11	19p13.11	610216	TMEM16H, KIAA1623	Transmembrane protein 16H	ANO8	57719	ENSG00000074855			Ano8 (MGI:2687327)
chr19	17334981	17342730	19p13.11	19p13.11	608536	GTPBP3, MSS1, COXPD23	GTP-binding protein 3	GTPBP3	84705	ENSG00000130299		Combined oxidative phosphorylation deficiency 23, 616198 (3), Autosomal recessive	Gtpbp3 (MGI:1917609)
chr19	17351447	17377348	19p13.2	19p13.11	607647	PLVAP, PV1	Plasmalemma vesicle-associated protein	PLVAP	83483	ENSG00000130300			Plvap (MGI:1890497)
chr19	17402938	17405647	19p13.2	19p13.11	600534	BST2	Bone marrow stromal cell antigen	BST2	684	ENSG00000130303			
chr19	17455424	17460915	19p13.11	19p13.11	608791	NXNL1, RDCVF, TXNL6, LOC115861	Nucleoredoxin-like protein 1	NXNL1	115861	ENSG00000171773			Nxnl1 (MGI:1924446)
chr19	17468744	17506168	19p13.1	19p13.11	600691	SLC27A1, FATP, FATP1	Solute carrier family 27, member 1	SLC27A1	376497	ENSG00000130304			Slc27a1 (MGI:1347098)
chr19	17511622	17521290	19p13.2	19p13.11	604951	PGLS	6-phosphogluconolactonase	PGLS	25796	ENSG00000130313			Pgls (MGI:1913421)
chr19	17523300	17556754	19p13.11	19p13.11	609967	BCNP1	B-cell novel protein 1	FAM129C	199786	ENSG00000167483			Fam129c (MGI:3686743)
chr19	17555593	17583161	19p13.11	19p13.11	617531	COLGALT1, GLT25D1	Collagen beta(1-0)galactosyltransferase 1	COLGALT1	79709	ENSG00000130309			Colgalt1 (MGI:1924348)
chr19	17601327	17688343	19p13.3	19p13.11	609894	UNC13A, KIAA1032	UNC13, C. elegans, homolog of, A	UNC13A	23025	ENSG00000130477			Unc13a (MGI:3051532)
chr19	17719451	17734514	19p13.11	19p13.11	607573	MAP1S, BPY2IP1, VCY2IP1, C19orf5	Microtubule-associated protein 1S	MAP1S	55201	ENSG00000130479			Map1s (MGI:2443304)
chr19	17747717	17788567	19p13.11	19p13.11	613437	FCHO1	FCH domain-only protein 1	FCHO1	23149	ENSG00000130475			Fcho1 (MGI:1921265)
chr19	17794827	17813575	19p	19p13.11	605863	TMEM3, B3GNT3	Transmembrane protein 3 (beta-1,3-N-acetylglucosaminyltransferase 3)	B3GNT3	10331	ENSG00000179913			B3gnt3 (MGI:2152535)
chr19	17816512	17821573	19p13.2	19p13.11	146738	INSL3	Insulin-like 3, Leydig cell	INSL3	3640	ENSG00000248099		Cryptorchidism, 219050 (3), Autosomal dominant	Insl3 (MGI:108427)
chr19	17824781	17848070	19p13.1	19p13.11	600173	JAK3, JAKL	Janus kinase 3 (Janus kinase, leukocyte)	JAK3	3718	ENSG00000105639		SCID, autosomal recessive, T-negative/B-positive type, 600802 (3), Autosomal recessive	Jak3 (MGI:99928)
chr19	17859877	17863323	19p	19p13.11	604178	RPL18A	Ribosomal protein L18a	RPL18A	6142	ENSG00000105640			Rpl18a (MGI:1924058)
chr19	17871393	17895174	19p13.2-p12	19p13.11	601843	SLC5A5, NIS, TDH1	Solute carrier family 5 (sodium iodide symporter), member-5	SLC5A5	6528	ENSG00000105641		Thyroid dyshormonogenesis 1, 274400 (3), Autosomal recessive	Slc5a5 (MGI:2149330)
chr19	18058993	18099026	19p13.1	19p13.11	601604	IL12RB1, IMD30	Interleukin-12 receptor, beta-1	IL12RB1	3594	ENSG00000096996		Immunodeficiency 30, 614891 (3), Autosomal recessive	Il12rb1 (MGI:104579)
chr19	18097763	18151691	19p13.11	19p13.11	612258	MAST3, KIAA0561	Microtubule-associated serine/threonine kinase 3	MAST3	23031	ENSG00000099308			Mast3 (MGI:2683541)
chr19	18153177	18170532	19q13.2-q13.4	19p13.11	603157	PIK3R2, MPPH1	Phosphatidylinositol 3-kinase, regulatory subunit 2	PIK3R2	5296	ENSG00000105647		Megalencephaly-polymicrogyria-polydactyly-hydrocephalus syndrome 1, 603387 (3), Autosomal dominant	Pik3r2 (MGI:1098772)
chr19	18173779	18178123	19p13.11	19p13.11	604664	IFI30, GILT	Interferon-gamma-inducible protein 30	IFI30	10437	ENSG00000216490			Ifi30 (MGI:2137648)
chr19	18193229	18196741	19p13.11	19p13.11	616133	MPV17L2	MPV17-like protein 2	MPV17L2	84769	ENSG00000254858			Mpv17l2 (MGI:2681846)
chr19	18196783	18204063	19p13.1-p12	19p13.11	179490	RAB3A	RAS-associated protein RAB3A	RAB3A	5864	ENSG00000105649			Rab3a (MGI:97843)
chr19	18207960	18248199	19p13.1	19p13.11	600128	PDE4C, DPDE1	Phosphodiesterase-4C, cAMP-specific (dunce, Drosophila, homolog phosphodiesterase E1)	PDE4C	5143	ENSG00000285188	between JUND (proximal) and RAB3A (distal)		Pde4c (MGI:99556)
chr19	18279693	18281655	19p13.1-p12	19p13.11	165162	JUND	jun D proto-oncogene	JUND	3727	ENSG00000130522			Jund (MGI:96648)
chr19	18306229	18323190	19p13.11	19p13.11	607284	LSM4	LSM4 protein	LSM4	25804	ENSG00000130520			Lsm4 (MGI:1354692)
chr19	18340572	18369952	19p13.11	19p13.11	610694	PGPEP1, PCP, PGP	Pyroglutamyl peptidase I	PGPEP1	54858	ENSG00000130517			Pgpep1 (MGI:1913772)
chr19	18382169	18389176	19p13.2-p13.1	19p13.11	605312	GDF15, PLAB, PDF, MIC1	Growth/differentiation factor-15 (bone morphogenetic protein, placental)	GDF15	9518	ENSG00000130513			Gdf15 (MGI:1346047)
chr19	18391136	18397644	19p13.2-p12	19p13.11	607518	LRRC25, MAPA	Leucine rich repeat containing 25	LRRC25	126364	ENSG00000175489			Lrrc25 (MGI:2445284)
chr19	18418718	18434561	19p13.1	19p13.11	607391	SSBP4	Single-stranded DNA-binding protein 4	SSBP4	170463	ENSG00000130511			Ssbp4 (MGI:1924150)
chr19	18434387	18438648	19p13.1	19p13.11	611670	ISYNA1, IPS	Myoinositol 1-phosphate synthase A1	ISYNA1	51477	ENSG00000105655	pseudogene on 4p15		Isyna1 (MGI:1919030)
chr19	18442662	18522126	19p13.1	19p13.11	600284	ELL	ELL gene (11-19 lysine-rich leukemia gene)	ELL	8178	ENSG00000105656			Ell (MGI:109377)
chr19	18531751	18544076	19p12	19p13.11	604840	FKBP8, FKBP38	FK506-binding protein 8	FKBP8	23770	ENSG00000105701	pseudogene on 1q32		Fkbp8 (MGI:1341070)
chr19	18557761	18569386	19p13.11	19p13.11	615178	KXD1, C10orf50	KXDL motif-containing protein 1	KXD1	79036	ENSG00000105700			Kxd1 (MGI:1922870)
chr19	18563765	18577459	19p13.1-p12	19p13.11	191321	UBA52	Ubiquitin A-52 residue ribosomal protein fusion product 1	UBA52	7311	ENSG00000221983			Uba52-ps (MGI:3644625)
chr19	18593224	18606849	19p12	19p13.11	604237	CRLF1, CISS1	Cytokine-like factor 1	CRLF1	9244	ENSG00000006016		Cold-induced sweating syndrome 1, 272430 (3), Autosomal recessive	Crlf1 (MGI:1340030)
chr19	18612871	18621039	19p12	19p13.11	617096	TMEM59L, BSMAP	Transmembrane protein 59-like	TMEM59L	25789	ENSG00000105696			Tmem59l (MGI:1915187)
chr19	18683614	18782332	19p13	19p13.11	607536	CRTC1, MECT1, KIAA0616, FLJ14027	CREB-regulated transcription coactivator 1	CRTC1	23373	ENSG00000105662	t(11;19)	Mucoepidermoid salivary gland carcinoma (3)	Crtc1 (MGI:2142523)
chr19	18782772	18791304	19p13.1	19p13.11	600310	COMP, EDM1, MED, PSACH	Cartilage oligomeric matrix protein	COMP	1311	ENSG00000105664		Epiphyseal dysplasia, multiple, 1, 132400 (3), Autosomal dominant; Pseudoachondroplasia, 177170 (3), Autosomal dominant	Comp (MGI:88469)
chr19	18831404	18868231	19p13.2-p13.11	19p13.11	601430	UPF1, RENT1, HUPF1	Upf1, yeast, homolog of	UPF1	5976	ENSG00000005007			Upf1 (MGI:107995)
chr19	18868545	18896726	19p12	19p13.11	606919	CERS1, LASS1, UOG1, EPM8	Ceramide synthase 1	CERS1	10715	ENSG00000223802	mutation identified in 1 EPM8 family	?Epilepsy, progressive myoclonic, 8, 616230 (3), Autosomal recessive	Cers1 (MGI:2136690)
chr19	18868545	18896143	19p12	19p13.11	602880	GDF1, DTGA3, DORV, RAI	Growth/differentiation factor 1	GDF1	2657	ENSG00000223802		Double-outlet right ventricle, 217095 (3); Right atrial isomerism, 208530 (3), Autosomal recessive; Tetralogy of Fallot, 187500 (3), Autosomal dominant; Transposition of great arteries, dextro-looped 3, 613854 (3), Autosomal dominant	Gdf1 (MGI:95683)
chr19	18899510	18919402	19p13.11	19p13.11	606942	COPE	Cotamer protein complex, subunit epsilon	COPE	11316	ENSG00000105669			Cope (MGI:1891702)
chr19	18929200	18941257	19p13.11	19p13.11	604800	HOMER3	Homer, homolog 3 (Drosophila)	HOMER3	9454	ENSG00000051128			Homer3 (MGI:1347359)
chr19	18990886	19034051	19p13.11	19p13.11	607993	SUGP2, SRFS14, KIAA0365	SURP and G-patch domains-containing protein 2	SUGP2	10147	ENSG00000064607			Sugp2 (MGI:2678085)
chr19	19063960	19113029	19p13.11	19p13.11	610823	SLC25A42	Solute carrier family 25, member 42	SLC25A42	284439	ENSG00000181035			Slc25a42 (MGI:1920345)
chr19	19145566	19170288	19p12	19p13.11	600661	MEF2B	MADS box transcription enhancer factor 2, polypeptide B (myocyte enhancer factor 2B)	MEF2B	100271849	ENSG00000213999			Mef2b (MGI:104526)
chr19	19176903	19192590	19p13.11	19p13.11	616601	BORCS8, MEF2BNB	BLOC1-related complex, subunit 8	BORCS8	729991	ENSG00000254901			Borcs8 (MGI:1919618)
chr19	19192198	19201868	19p12	19p13.11	603200	RFXANK	Regulatory factor X, ankyrin repeat-containing	RFXANK	8625	ENSG00000064490		MHC class II deficiency, complementation group B, 209920 (3), Autosomal recessive	Rfxank (MGI:1333865)
chr19	19211972	19252251	19p12	19p13.11	600826	CSPG3, NCAN	Chondroitin sulfate proteoglycan 3 (neurocan)	NCAN	1463	ENSG00000130287			Ncan (MGI:104694)
chr19	19264364	19273264	19p12	19p13.11	606563	TM6SF2, KIAA1926	Transmembrane 6 superfamily, member 2	TM6SF2	53345	ENSG00000213996			Tm6sf2 (MGI:1933210)
chr19	19276512	19320511	19p13.11	19p13.11	607992	SUGP1, SF4	SURP and G-patch domains-containing protein 1	SUGP1	57794	ENSG00000105705			Sugp1 (MGI:1917866)
chr19	19320606	19358753	19p13.11	19p13.11	614560	MAU2, SCC4, KIAA0892	MAU2 chromatid cohesion factor, C. elegans, homolog of	MAU2	23383	ENSG00000129933			Mau2 (MGI:1921799)
chr19	19385802	19508931	19q13.11	19p13.11	614997	GATAD2A	GATA zinc finger domain-containing protein 2A	GATAD2A	54815	ENSG00000167491			Gatad2a (MGI:2384585)
chr19	19514218	19515659	19p13.11	19p13.11	610712	TSSK6, SSTK, TSSK4	Testis-specific serine/threonine kinase 6	TSSK6	83983	ENSG00000178093			Tssk6 (MGI:2148775)
chr19	19516209	19528203	19p13.2-p13.1	19p13.11	609435	NDUFA13, GRIM19	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 13	NDUFA13	51079	ENSG00000186010		{Thyroid carcinoma, Hurthle cell}, 607464 (3)	Ndufa13 (MGI:1914434)
chr19	19538264	19546658	19p13.11	19p13.11	612419	CILP2	Cartilage intermediate layer protein 2	CILP2	148113	ENSG00000160161			Cilp2 (MGI:1915959)
chr19	19561706	19618915	19p13.11	19p13.11	608127	PBX4	Pre-B-cell leukemia transcription factor 4	PBX4	80714	ENSG00000105717			Pbx4 (MGI:1931321)
chr19	19623654	19628394	19p12	19p13.11	605110	LPAR2, EDG4	Lysophosphatidic acid receptor 2	LPAR2	9170	ENSG00000064547			Lpar2 (MGI:1858422)
chr19	19629472	19643666	19p12-p11	19p13.11	609694	GMIP	GEM-interacting protein	GMIP	51291	ENSG00000089639			Gmip (MGI:1926066)
chr19	19668069	19683505	19p13.1-p12	19p13.11	603983	ZNF101	Zinc finger protein-101	ZNF101	94039	ENSG00000181896			
chr19	19710471	19733111	19p13.3-p13.2	19p13.11	194556	ZNF14, KOX6	Zinc finger protein-14 (KOX 6)	ZNF14	7561	ENSG00000105708			Zfp976,Zfp975 (MGI:3648690,MGI:3036263)
chr19	19756370	19776412	19p13.11	19p13.11	617117	LINC00663	Long intergenic noncoding RNA 663	LINC00663	284440				
chr19	19865829	19893483	19p13	19p13.11	606954	ZNF253	Zinc finger protein 253	ZNF253	56242	ENSG00000256771			Zfp65 (MGI:107769)
chr19	19900912	19935572	19p13.1-p12	19p12	603975	ZNF93	Zinc finger protein-93	ZNF93	81931	ENSG00000184635			Zfp457 (MGI:2664334)
chr19	20077993	20127089	19p13.1-p12	19p12	603973	ZNF90	Zinc finger protein-90	ZNF90	7643	ENSG00000213988			
chr19	20531229	20565820	19p13.1-p12	19p12	603984	ZNF737, ZNF102	Zinc finger protein-737	ZNF737	100129842	ENSG00000237440			
chr19	20923226	20950696	19p13.1-p12	19p12	603899	ZNF85	Zinc finger protein-85	ZNF85	7639	ENSG00000105750			
chr19	21724040	21767627	19p13.1-p12	19p12	603982	ZNF100	Zinc finger protein-100	ZNF100	163227	ENSG00000197020			
chr19	21804948	21852094	19p13.1-p12	19p12	603972	ZNF43	Zinc finger protein-43	ZNF43	7594	ENSG00000198521			Zfp458 (MGI:3040691)
chr19	21939765	22010942	19p13.1-p12	19p12	603977	ZNF208, ZNF95	Zinc finger protein-208	ZNF208	7757	ENSG00000160321			Zfp619 (MGI:1917477)
chr19	22052447	22091102	19p12	19p12	606957	ZNF257	Zinc finger protein 257	ZNF257	113835	ENSG00000197134			
chr19	22391096	22422345	19p12	19p12	603980	ZNF98	Zinc finger protein-98	ZNF98	148198	ENSG00000197360			
chr19	22752182	22784170	19p12	19p12	603981	ZNF99	Zinc finger protein-99	ZNF99	7652	ENSG00000213973			
chr19	23305003	23395559	19p13.1-p12	19p12	603971	ZNF91	Zinc finger protein-91	ZNF91	7644	ENSG00000167232			Zfp869 (MGI:1914119)
chr19	24033404	24129967	19p13.12-p13.11	19p12	604768	ZNF254, ZNF91L	Zinc finger protein-254	ZNF254	9534	ENSG00000213096			
chr19	26200000	58617616	19q		601764	BFIS1, BFIC1	Benign familial infantile seizures		8181			Seizures, benign familial infantile, 1, 601764 (2), Autosomal dominant	
chr19	26200000	58617616	19q		607592	HPCQTL19	Prostate cancer aggressiveness quantitative trait locus on chromosome 19		347747		D19S902	{Prostate cancer aggressiveness QTL}, 176807 (2), Autosomal dominant	
chr19	26200000	58617616	19q		606712	SLI2	Specific language impairment QTL, 2		171014			Specific language impairment QTL, 2, 606712 (2), Multifactorial	
chr19	28100000	31900000	19q12		606875	HSCR7	Hirschsprung disease, susceptibility to, 7		246322			{Hirschsprung disease, susceptibility to, 7}, 606875 (2)	
chr19	29207259	29213228	19q12	19q12	191327	UQCRFS1	Ubiquinol-cytochrome c reductase, Rieske iron-sulfur polypeptide 1	UQCRFS1	7386	ENSG00000169021			Uqcrfs1 (MGI:1913944)
chr19	29606262	29617254	19q12	19q12	606114	RPP29, POP4	Ribonuclease P, 29kD subunit	POP4	10775	ENSG00000105171			Pop4 (MGI:1913411)
chr19	29665419	29675476	19q11	19q12	615200	PLEKHF1, LAPF, PHAFIN1	Pleckstrin homolog domain-containing protein, family F, member 1	PLEKHF1	79156	ENSG00000166289			Plekhf1 (MGI:1919537)
chr19	29698885	29715788	19q12	19q12	614297	C19orf12, NBIA4, SPG43	Chromosome 19 open reading frame 12	C19orf12	83636	ENSG00000131943	mutation identified in 1 SPG43 family	Neurodegeneration with brain iron accumulation 4, 614298 (3), Autosomal recessive; ?Spastic paraplegia 43, autosomal recessive, 615043 (3), Autosomal recessive	1600014C10Rik (MGI:1919494)
chr19	29811993	29824316	19q13.1	19q12	123837	CCNE1	Cyclin E1	CCNE1	898	ENSG00000105173			Ccne1 (MGI:88316)
chr19	29923643	30016611	19q12	19q12	603494	URI1, NNX3, RMP	Prefoldin-like chaperone URI1	URI1	8725	ENSG00000105176			Uri1 (MGI:1342294)
chr19	31149869	31349524	19q13.11	19q12	614119	TSHZ3, KIAA1474	Teashirt zinc finger homeobox 3	TSHZ3	57616	ENSG00000121297			Tshz3 (MGI:2442819)
chr19	31900000	58617616	19q13		100070	AAA1, AAA	Aortic aneurysm, familial abdominal 1		100329167		near D19S416	Aortic aneurysm, familial abdominal 1, 100070 (2), Autosomal dominant	
chr19	31900000	58617616	19q13		608542	ANIB2	Aneurysm, intracranial berry, 2	ANIB2	449013		between D19S245 and D19S246	Aneurysm, intracranial berry, 2, 608542 (2)	
chr19	31900000	58617616	19q13		609376	CTRCT35, CATCN1	Cataract 35		619404		max lod at D19S416	Cataract 35, congenital nuclear, 609376 (2), Autosomal recessive	
chr19	31900000	35100000	19q13.11		613026	DEL19q13.11d, C19DELq13.11d	Chromosome 19q13.11 deletion syndrome, distal				contiguous gene syndrome	Chromosome 19q13.11 deletion syndrome, distal, 613026 (4), Autosomal dominant	
chr19	31900000	35100000	19q13.11		617219	DEL19q13.11p, C19DELq13.11p	Chromosome 19q13.11 deletion syndrome, proximal					Chromosome 19q13.11 deletion syndrome, proximal, 617219 (4), Autosomal dominant	
chr19	31900000	58617616	19q13.1-qter		129150	E11S	Echo 11 sensitivity	E11S	1878				
chr19	31900000	58617616	19q13		611907	EA7	Episodic ataxia, type 7		100188859		between rs1366444 and rs952108	Episodic ataxia, type 7, 611907 (2), Autosomal dominant	
chr19	31900000	58617616	19q13		600757	OFC3	Orofacial cleft-3	OFC3	4965		?role of BCL3	Orofacial cleft-3, 600757 (2), ?Autosomal dominant	
chr19	31900000	58617616	19q13		614746	UAQTL5	Uric acid concentration, serum, quantitative trait locus 5		100996934		associated with rs150414818	[Uric acid concentration, serum, QTL5], 614746 (2)	
chr19	32405748	32485892	19q13.11	19q13.11	613894	DPY19L3	DPY19-like 3	DPY19L3	147991	ENSG00000178904			Dpy19l3 (MGI:2443952)
chr19	32581187	32587451	19q13.11	19q13.11	604583	PDCD5, TFAR19	Programmed cell death 5	PDCD5	9141	ENSG00000105185			Pdcd5,Pdcd5-ps (MGI:3782009,MGI:1913538)
chr19	32675406	32678299	19q13.11	19q13.11	607814	RGS9BP, R9AP, RGS9, PERRS	Regulator of G protein signaling 9-binding protein	RGS9BP	388531	ENSG00000186326		Bradyopsia, 608415 (3)	Rgs9bp (MGI:2384418)
chr19	32830510	32870956	19q13.1	19q13.11	604144	SLC7A9, CSNU3	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 9	SLC7A9	11136	ENSG00000021488		Cystinuria, 220100 (3), Autosomal recessive, Autosomal dominant	Slc7a9 (MGI:1353656)
chr19	32875924	32972028	19q13.11	19q13.11	615470	CEP89, CCDC123, CEP123, FLJ14640	Centrosomal protein, 89kD	CEP89	84902	ENSG00000121289			Cep89 (MGI:1919390)
chr19	32972211	32977494	19q13.11	19q13.11	610884	C19orf40, FAAP24	Chromosome 19 open reading frame 40 (Fanconi anemia-associated protein, 24kD	FAAP24	91442	ENSG00000131944			Faap24 (MGI:2142208)
chr19	32978591	33064917	19q13.11	19q13.11	617932	RHPN2	Rhophilin 2	RHPN2	85415	ENSG00000131941			
chr19	33194692	33208866	19q12-q13.2	19q13.11	603159	LRP3	Low density lipoprotein receptor related protein 3	LRP3	4037	ENSG00000130881			Lrp3 (MGI:3584516)
chr19	33208663	33225849	19q13.11	19q13.11	607959	SLC7A10, ASC1	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 10	SLC7A10	56301	ENSG00000130876			Slc7a10 (MGI:1858261)
chr19	33299933	33302563	19q13.1	19q13.11	116897	CEBPA, CEBP	CCAAT/enhancer-binding protein (C/EBP), alpha	CEBPA	1050	ENSG00000245848	germline mutation identified in 1 AML family	?Leukemia, acute myeloid, 601626 (3), Autosomal dominant; Leukemia, acute myeloid, somatic, 601626 (3)	Cebpa (MGI:99480)
chr19	33373668	33382685	19q13.11	19q13.11	138972	CEBPG, GPE1BP	CCAAT/enhancer-binding protein, gamma	CEBPG	1054	ENSG00000153879			Cebpg (MGI:104982)
chr19	33386948	33521892	19cen-q13.11	19q13.11	613230	PEPD	Peptidase D (prolidase)	PEPD	5184	ENSG00000124299	closely linked to APOC2	Prolidase deficiency, 170100 (3), Autosomal recessive	Pepd (MGI:97542)
chr19	33621954	33773508	19q13.1	19q13.11	610190	CHST8, GALNAC4ST1, PSS3	Carbohydrate sulfotransferase 8	CHST8	64377	ENSG00000124302	mutation has been identified in 1 PSS3 family	?Peeling skin syndrome 3, 616265 (3), Autosomal recessive	Chst8 (MGI:1916197)
chr19	33795539	33815760	19q13.11	19q13.11	615240	KCTD15	Potassium channel tetramerization domain-containing protein 15	KCTD15	79047	ENSG00000153885			Kctd15 (MGI:2385276)
chr19	34172446	34229514	19q13.11	19q13.11	610677	LSM14A, RAP55	LSM14A protein	LSM14A	26065	ENSG00000257103			Lsm14a (MGI:1914320)
chr19	34353329	34402412	19q13.1	19q13.11	172400	GPI	Glucose phosphate isomerase; neuroleukin	GPI	2821	ENSG00000105220		Hemolytic anemia, nonspherocytic, due to glucose phosphate isomerase deficiency, 613470 (3), Autosomal recessive	Gpi1 (MGI:95797)
chr19	34404397	34426167	19q13.11	19q13.11	615661	PDCD2L, MGC13096	Programmed cell death 2-like protein	PDCD2L	84306	ENSG00000126249			Pdcd2l (MGI:1915329)
chr19	34428175	34469892	19q12	19q13.11	613295	UBA2, SAE2	Ubiquitin-like modifier-activating enzyme 2	UBA2	10054	ENSG00000126261			Uba2 (MGI:1858313)
chr19	34481932	34509146	19q13.12	19q13.11	614790	WTIP	WT1-interacting protein	WTIP	126374	ENSG00000142279			Wtip (MGI:2141920)
chr19	34590624	34594584	19q13.11	19q13.11	615063	SCGB2B2	Secretoglobin, family 2B, member 2	SCGB2B2	284402	ENSG00000205209			
chr19	34734193	34746482	19q13.2	19q13.11	606741	ZNF181	Zinc finger protein-181	ZNF181	339318	ENSG00000197841			
chr19	35030687	35040448	19q13.1	19q13.11	600235	SCN1B, GEFSP1, BRGDA5, ATFB13, EIEE52	Sodium channel, voltage-gated, type I, beta polypeptide	SCN1B	6324	ENSG00000105711		Atrial fibrillation, familial, 13, 615377 (3), Autosomal dominant; Brugada syndrome 5, 612838 (3); Cardiac conduction defect, nonspecific, 612838 (3); Epilepsy, generalized, with febrile seizures plus, type 1, 604233 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 52, 617350 (3), Autosomal recessive	Scn1b (MGI:98247)
chr19	35040505	35066572	19q11-q13.2	19q13.11	142440	HPN	Hepsin	HPN	3249	ENSG00000105707			Hpn (MGI:1196620)
chr19	35115817	35124323	19q13.12	19q13.12	604996	FXYD3, PLML, MAT8	FXYD domain-containing ion transport regulator 3	FXYD3	5349	ENSG00000089356			Fxyd3 (MGI:107497)
chr19	35124512	35135273	19q13.11	19q13.12	608303	LGI4, AMCNMY	Leucine-rich gene, glioma-inactivated, 4	LGI4	163175	ENSG00000153902		Arthrogryposis multiplex congenita, neurogenic, with myelin defect, 617468 (3), Autosomal recessive	Lgi4 (MGI:2180197)
chr19	35137205	35143054	19q13.1	19q13.12	602359	FXYD1, PLM	FXYD domain-containing ion transport regulator 1 (phospholemman)	FXYD1	5348	ENSG00000266964			Fxyd1 (MGI:1889273)
chr19	35143249	35154301	19q13.12	19q13.12	606684	FXYD7	FXYD domain-containing ion transport regulator 7	FXYD7	53822	ENSG00000221946			Fxyd7 (MGI:1889006)
chr19	35154721	35169884	19q13.12	19q13.12	606669	FXYD5	FXYD domain-containing ion transport regulator 5	FXYD5	53827	ENSG00000089327			Fxyd5 (MGI:1201785)
chr19	35248655	35267963	19q13.12	19q13.12	616582	LSR	Lipolysis-stimulated lipoprotein receptor	LSR	51599	ENSG00000105699			Lsr (MGI:1927471)
chr19	35268977	35279820	19q13.1	19q13.12	600390	USF2, FIP	Upstream transcription factor 2, c-fos interacting	USF2	7392	ENSG00000105698			Usf2 (MGI:99961)
chr19	35282345	35285142	19q13	19q13.12	606464	HAMP, LEAP1, HEPC, HFE2B	Hepcidin antimicrobial peptide	HAMP	57817	ENSG00000105697	digenic form with HAMP and HFE mutations	Hemochromatosis, type 2B, 613313 (3), Autosomal recessive	
chr19	35292085	35313806	19q13.1	19q13.12	159460	MAG, GMA, SPG75	Myelin-associated glycoprotein	MAG	4099	ENSG00000105695		Spastic paraplegia 75, autosomal recessive, 616680 (3), Autosomal recessive	Mag (MGI:96912)
chr19	35329165	35347360	19q13.1	19q13.12	107266	CD22	CD22 antigen	CD22	933	ENSG00000012124			Cd22 (MGI:88322)
chr19	35351541	35352463	19q13.1	19q13.12	603820	FFAR1, GPR40	Free fatty acid receptor 1	FFAR1	2864	ENSG00000126266			Ffar1 (MGI:2684079)
chr19	35358105	35360490	19q13.1	19q13.12	603821	FFAR3, GPR41	Free fatty acid receptor 3	FFAR3	2865	ENSG00000185897			Ffar3 (MGI:2685324)
chr19	35371094	35372452	19q13.1	19q13.12	603822	GPR42	G protein-coupled receptor-42	GPR42	2866	ENSG00000126251			
chr19	35447964	35451766	19q13.1	19q13.12	603823	FFAR2, GPR43	Free fatty acid receptor 2	FFAR2	2867	ENSG00000126262			Ffar2 (MGI:2441731)
chr19	35487323	35490530	19q13.1	19q13.12	617212	KDAP	Keratinocyte differentiation-associated protein	KRTDAP	388533	ENSG00000188508			Krtdap (MGI:1928282)
chr19	35497216	35513677	19q13.1	19q13.12	617211	DMKN	Dermokine	DMKN	93099	ENSG00000161249			Dmkn (MGI:1920962)
chr19	35523366	35528370	19q13.1	19q13.12	609969	SBSN	Suprabasin	SBSN	374897	ENSG00000189001			Sbsn (MGI:2446326)
chr19	35533411	35545318	19q13.1	19q13.12	609169	GAPDHS, GAPD2	Glyceraldehyde-3-phosphate dehydrogenase, spermatogenic	GAPDHS	26330	ENSG00000105679	9.5 Mbp prox. to APOE		Gapdhs (MGI:95653)
chr19	35550192	35563657	19q13.1	19q13.12	137216	ATP4A, ATP6A	ATPase, H+, K+ transporting, alpha	ATP4A	495	ENSG00000105675			Atp4a (MGI:88113)
chr19	35612743	35625348	19q13.12	19q13.12	613432	HAUS5, DGT5, KIAA0841	HAUS augmin-like complex, subunit 5	HAUS5	23354	ENSG00000249115			Haus5 (MGI:1919159)
chr19	35629015	35637685	19q13.12	19q13.12	613232	RBM42	RNA-binding motif protein 42	RBM42	79171	ENSG00000126254			Rbm42 (MGI:1915285)
chr19	35641174	35644870	19q13.1	19q13.12	609358	ETV2, ETSRP71	ETS variant gene 2	ETV2	2116	ENSG00000105672			Etv2 (MGI:99253)
chr19	35648222	35658783	19q13.1	19q13.12	124089	COX6B1	Cytochrome c oxidase, subunit VIb polypeptide 1 (ubiquitous)	COX6B1	1340	ENSG00000126267		Mitochondrial complex IV deficiency, 220110 (3), Autosomal recessive, Mitochondrial	Cox6b1 (MGI:107460)
chr19	35666515	35678484	19q13.1	19q13.12	611557	UPK1A, UPIA	Uroplakin 1A	UPK1A	11045	ENSG00000105668			Upk1a (MGI:98911)
chr19	35704480	35717047	19q13.1	19q13.12	605859	ZBTB32, FAXF, TZFP, ROG	Zinc finger- and BTB domain-containing protein 32	ZBTB32	27033	ENSG00000011590			Zbtb32 (MGI:1891838)
chr19	35717817	35738879	19q13.1	19q13.12	606834	KMT2B, MLL4, KIAA0304, DYT28	Lysine (K)-specific methyltransferase 2B	KMT2B	9757	ENSG00000272333		Dystonia 28, childhood-onset, 617284 (3), Autosomal dominant	Kmt2b (MGI:109565)
chr19	35738800	35742449	19q13.12	19q13.12	614143	IGFLR1, TMEM149	IGF-like family receptor 1	IGFLR1	79713	ENSG00000126246			Igflr1 (MGI:3655979)
chr19	35742526	35745441	19q13.2	19q13.12	601080	U2AF1L4, U2AF1RS3	U2 small nuclear RNA auxillary factor 1-like 4	U2AF1L4	199746	ENSG00000161265			
chr19	35745576	35747518	19q13.1	19q13.12	607632	PSENEN, PEN2, ACNINV2	Presenilin enhancer 2, C. elegans, homolog of	PSENEN	55851	ENSG00000205155		Acne inversa, familial, 2, with or without Dowling-Degos disease, 613736 (3), Autosomal dominant	Psenen (MGI:1913590)
chr19	35754565	35757028	19q13.13	19q13.12	610695	HSPB6, HSP20	Heat-shock 27kD protein 6	HSPB6	126393	ENSG00000004776			Hspb6 (MGI:2685325)
chr19	35775514	35788821	19q13.12	19q13.12	614902	ARHGAP33, TCGAP	Rho GTPase-activating protein 33	ARHGAP33	115703	ENSG00000004777			Arhgap33 (MGI:2673998)
chr19	35799986	35813298	19q13.12	19q13.12	616377	PRODH2, HYPDH	Proline dehydrogenase (oxidase) 2	PRODH2	58510	ENSG00000250799			Prodh2 (MGI:1929093)
chr19	35825371	35851992	19q13.1	19q13.12	602716	NPHS1, NPHN	Nephrin	NPHS1	4868	ENSG00000161270		Nephrotic syndrome, type 1, 256300 (3), Autosomal recessive	Nphs1 (MGI:1859637)
chr19	35851634	35867145	19q13.1	19q13.12	607762	KIRREL2, NEPH3, NLG1, FILTRIN	Kin or IRRE-like 2 (nephrin-like 3)	KIRREL2	84063	ENSG00000126259			Kirrel2 (MGI:2442334)
chr19	35868444	35879796	19q13.2	19q13.12	104775	APLP1, APLP	Amyloid beta (A4) precursor-like protein-1	APLP1	333	ENSG00000105290			Aplp1 (MGI:88046)
chr19	35902364	35904270	19q13.1	19q13.12	604089	DAP10	DNAX-activation protein 10	HCST	10870	ENSG00000126264			Hcst (MGI:1344360)
chr19	35904400	35908308	19q13.1	19q13.12	604142	TYROBP, PLOSL, DAP12	TYRO protein tyrosine kinase-binding protein	TYROBP	7305	ENSG00000011600		Nasu-Hakola disease, 221770 (3), Autosomal recessive	Tyrobp (MGI:1277211)
chr19	35937119	35945194	19q13.2	19q13.12	612809	LRFN3, SALM4	Leucine-rich repeat and fibronectin type III domain-containing protein 3	LRFN3	79414	ENSG00000126243			Lrfn3 (MGI:2442512)
chr19	35995187	35996317	19q12-q13.2	19q13.12	612848	SDHAF1	Succinate dehydrogenase complex assembly factor 1	SDHAF1	644096	ENSG00000205138		Mitochondrial complex II deficiency, 252011 (3), Autosomal recessive	Sdhaf1 (MGI:1915582)
chr19	36003298	36008792	19q13.12	19q13.12	615535	SYNE4, NESP4, C19orf46, DFNB76	Spectrin repeat-containing nuclear envelope protein 4	SYNE4	163183	ENSG00000181392		Deafness, autosomal recessive 76, 615540 (3), Autosomal recessive	Syne4 (MGI:2141950)
chr19	36009115	36014242	19q13.12	19q13.12	613304	ALKBH6, ABH6	AlkB, E. coli, homolog of, 6	ALKBH6	84964	ENSG00000239382			Alkbh6 (MGI:2142037)
chr19	36014659	36032894	19q13	19q13.12	607382	CLIP3, CLIPR59	CAP-GLY domain-containing linker protein 3, 607382 (3)	CLIP3	25999	ENSG00000105270			Clip3 (MGI:1923936)
chr19	36034984	36054761	19q13.12	19q13.12	612536	THAP8	THAP domain-containing protein 8	THAP8	199745	ENSG00000161277			
chr19	36054880	36111144	19q13.12	19q13.12	613583	WDR62, C19orf14, MCPH2	WD repeat-containing protein 62	WDR62	284403	ENSG00000075702		Microcephaly 2, primary, autosomal recessive, with or without cortical malformations, 604317 (3), Autosomal recessive	Wdr62 (MGI:1923696)
chr19	36111179	36113710	19q13.1	19q13.12	616442	OVOL3	ovo-like 3	OVOL3	728361	ENSG00000105261			Ovol3 (MGI:2388075)
chr19	36113708	36115303	19q12	19q13.12	180662	POLR2I	Polymerase (RNA) II (DNA directed) polypeptide I, 14.5kD	POLR2I	5438	ENSG00000105258			Polr2i (MGI:1917170)
chr19	36114948	36125947	19q13.11-q13.12	19q13.12	601303	CKAP1	Cytoskeleton-associated protein 1	TBCB	1155	ENSG00000105254			Tbcb (MGI:1913661)
chr19	36139925	36150352	19q13.12	19q13.12	114170	CAPNS1, CAPN4	Calpain, small polypeptide	CAPNS1	826	ENSG00000126247			Capns1 (MGI:88266)
chr19	36150921	36152868	19q13.12	19q13.12	123995	COX7A1, COX7AM	Cytochrome c oxidase, subunit VIIa, polypeptide-1, muscle	COX7A1	1346	ENSG00000161281			Cox7a1 (MGI:1316714)
chr19	36182059	36215083	19q13.12	19q13.12	614275	ZNF565	Zinc finger protein 565	ZNF565	147929	ENSG00000196357			Zfp84 (MGI:107780)
chr19	36214601	36238773	19q13.1	19q13.12	601505	ZNF146, OZF	Zinc finger protein-146	ZNF146	7705	ENSG00000167635			Zfp146 (MGI:1347092)
chr19	36510686	36528487	19q13.12	19q13.12	613749	ZNF260, PEX1	Zinc finger protein 260	ZNF260	339324	ENSG00000254004			Zfp260 (MGI:1347071)
chr19	36605304	36628596	19q13.13	19q13.12	609516	ZNF382, KS1	Zinc finger protein 382	ZNF382	84911	ENSG00000161298			Zfp382 (MGI:3588204)
chr19	36636620	36666852	19q13.4	19q13.12	608640	ZNF461, GIOT1	Zinc finger protein-461	ZNF461	92283	ENSG00000197808			
chr19	36916328	36997931	19q13.12	19q13.12	617566	ZNF568, ZFP568	Zinc finger protein 568	ZNF568	374900	ENSG00000198453			
chr19	37007814	37130366	19q13.12	19q13.12	617216	ZNF420, APAK	Zinc finger protein 420	ZNF420	147923	ENSG00000197050			Zfp420 (MGI:2444666)
chr19	37312836	37364454	19q13.12	19q13.12	165250	HKR1	GLI-Kruppel family member HKR1 (oncogene HKR1)	HKR1	284459	ENSG00000181666			
chr19	37411141	37469262	19q13.12	19q13.12	613904	ZNF569	Zinc finger protein 569	ZNF569	148266	ENSG00000196437			Zfp74 (MGI:107784)
chr19	37551370	37614178	19q13.13	19q13.12	613903	ZNF540	Zinc finger protein 540	ZNF540	163255	ENSG00000171817			
chr19	37631008	37656260	19q13.12	19q13.12	617317	ZFP30, ZNF745, KIAA0961	Zinc finger protein 30, mouse, homolog of	ZFP30	22835	ENSG00000120784			Zfp30 (MGI:99178)
chr19	37906821	38208371	19q13.1	19q13.1-q13.2	616655	SIPA1L3, SPAL3, SPAR3, KIAA0545, CTRCT45	SIPA1-like protein 3	SIPA1L3	23094	ENSG00000105738	mutation identified in 1 CTRCT45 family	?Cataract 45, 616851 (3), Autosomal recessive	Sipa1l3 (MGI:1921456)
chr19	38200000	58617616	19q13.2-q13.4		603855	CFM1	Cystic fibrosis modifier-1	CFM1	10167			{Meconium ileus in cystic fibrosis, susceptibility to}, 603855 (2)	
chr19	38200000	50900000	19q13.2-q13.3		611097	MRT11	Mental retardation, autosomal recessive, 11	MRT11	100101426		between rs2109075 and rs8101149	Mental retardation, autosomal recessive, 11, 611097 (2), Autosomal recessive	
chr19	38200000	42900000	19q13.2		227050	TEC	Transient erythroblastopenia of childhood		100124696			Transient erythroblastopenia of childhood, 227050 (2), Autosomal recessive	
chr19	38200000	50900000	19q13.2-q13.3		165060	TRNAU1, TRSP	Transfer RNA selenocysteine 1 (anticodon UCA)	TRU-TCA1-1	7234		pseudogene on 22		
chr19	38211005	38229713	19q13.13-q13.2	19q13.2	601670	DPF1, NEUD4	D4, zinc, and double PHD fingers family, member 1	DPF1	8193	ENSG00000011332			Dpf1 (MGI:1352748)
chr19	38251236	38256590	19q13.1	19q13.2	608153	PPP1R14A, CPI17	Protein phosphatase 1, regulatory subunit 14A	PPP1R14A	94274	ENSG00000167641			Ppp1r14a (MGI:1931139)
chr19	38264457	38292613	19q13.1	19q13.2	605124	SPINT2, HAI2, DIAR3	Serine protease inhibitor, Kunitz-type, 2 (hepatocyte growth factor activator inhibitor 2; bikunin, placental)	SPINT2	10653	ENSG00000167642		Diarrhea 3, secretory sodium, congenital, syndromic, 270420 (3), Autosomal recessive	Spint2 (MGI:1338031)
chr19	38319843	38329013	19q13.1	19q13.2	603939	KCNK6, TWIK2, TOSS	Potassium channel, subfamily K, member 6	KCNK6	9424	ENSG00000099337			Kcnk6 (MGI:1891291)
chr19	38335562	38370948	19q13.1	19q13.2	613452	CATSPERG	Cation channel, sperm-associated, gamma	CATSPERG	57828	ENSG00000099338			Catsperg2,Catsperg1 (MGI:2443617,MGI:1923968)
chr19	38374549	38383823	19q13.2	19q13.2	617844	PSMD8	Proteasome 26S subunit, non-ATPase, 8	PSMD8	5714	ENSG00000099341			Psmd8 (MGI:1888669)
chr19	38384346	38388602	19q13.2	19q13.2	609966	GGN	Gametogenetin, mouse, homolog of	GGN	199720	ENSG00000179168			Ggn (MGI:2181461)
chr19	38390060	38399883	19q13.13	19q13.2	609293	SPRED3	Sprouty-related EVH1 domain-containing protein 3	SPRED3	399473	ENSG00000188766			Spred3 (MGI:2142186)
chr19	38409054	38426304	19q13.1	19q13.2	607320	RASGRP4	Ras guanyl nucleotide-releasing protein 4	RASGRP4	115727	ENSG00000171777			Rasgrp4 (MGI:2386851)
chr19	38433699	38587563	19q13.1	19q13.2	180901	RYR1, MHS, CCO	Ryanodine receptor-1, skeletal	RYR1	6261	ENSG00000196218		Central core disease, 117000 (3), Autosomal recessive, Autosomal dominant; King-Denborough syndrome, 145600 (3), Autosomal dominant; {Malignant hyperthermia susceptibility 1}, 145600 (3), Autosomal dominant; Minicore myopathy with external ophthalmoplegia, 255320 (3), Autosomal recessive; Neuromuscular disease, congenital, with uniform type 1 fiber, 117000 (3), Autosomal recessive, Autosomal dominant	Ryr1 (MGI:99659)
chr19	38587639	38618034	19q13.1-q13.4	19q13.2	601983	MAP4K1, HPK1	Mitogen-activated protein kinase kinase kinase kinase 1	MAP4K1	11184	ENSG00000104814			Map4k1 (MGI:1346882)
chr19	38619071	38636958	19q13.2	19q13.2	609596	EIF3K, PLAC24, EIF3S12	Eukaryotic translation initiation factor 3, subunit K	EIF3K	27335	ENSG00000178982			Eif3k (MGI:1921080)
chr19	38647615	38730531	19q13	19q13.2	604638	ACTN4, FSGS1, FSGS	Actinin, alpha-4	ACTN4	81	ENSG00000130402		Glomerulosclerosis, focal segmental, 1, 603278 (3), Autosomal dominant	Actn4 (MGI:1890773)
chr19	38730047	38744473	19q13	19q13.2	608839	CAPN12	Calpain 12	CAPN12	147968	ENSG00000182472			Capn12 (MGI:1891369)
chr19	38770967	38773516	19q13.2	19q13.2	600615	LGALS7	Lectin, galactoside-binding, soluble, 7 (galectin 7)	LGALS7	3963	ENSG00000205076			Lgals7 (MGI:1316742)
chr19	38789209	38791753	19q13.2	19q13.2	617139	LGALS7B	Lectin, galactoside-binding, soluble, 7B	LGALS7B	653499	ENSG00000205076			Lgals7 (MGI:1316742)
chr19	38801670	38813613	19q13.2	19q13.2	602518	LGALS4	Lectin, galactoside-binding, soluble, 4	LGALS4	3960	ENSG00000171747			Lgals4 (MGI:107536)
chr19	38815421	38831856	19q13	19q13.2	600696	ECH1	Enoyl Coenzyme A hydratase 1, peroxisomal	ECH1	1891	ENSG00000104823			Ech1 (MGI:1858208)
chr19	38836377	38852338	19q13.2	19q13.2	603083	HNRNPL, HNRPL	Heterogeneous nuclear riboprotein 1	HNRNPL	3191	ENSG00000104824			Hnrnpl (MGI:104816)
chr19	38878554	38899861	19q	19q13.2	604480	SIRT2, SIR2L, SIR2L2	Sirtuin, S. cerevisiae, homolog 2	SIRT2	22933	ENSG00000068903			Sirt2 (MGI:1927664)
chr19	38899502	38908893	19q13.1	19q13.2	604495	NFKBIB, IKBB, TRIP9	Nuclear factor of kappa light chain gene enhancer in B cells inhibitor, beta	NFKBIB	4793	ENSG00000104825			Nfkbib (MGI:104752)
chr19	38908170	38914370	19q13.2	19q13.2	617634	CCER2	Coiled-coil glutamate-rich protein 2	CCER2	643669	ENSG00000262484			Ccer2 (MGI:3645242)
chr19	38915263	38930895	19q13.2	19q13.2	612804	SARS2	Seryl-tRNA synthetase 2	SARS2	54938	ENSG00000104835		Hyperuricemia, pulmonary hypertension, renal failure, and alkalosis, 613845 (3), Autosomal recessive	Sars2 (MGI:1919234)
chr19	38930707	38933019	19q13.1	19q13.2	603021	MRPS12, RPSM12	Ribosomal protein, mitochondrial, S12	MRPS12	6183	ENSG00000128626			Mrps12 (MGI:1346333)
chr19	38941400	38975812	19q13.2	19q13.2	609094	FBXO17, FBX17, FBX26, FBG4	F-box only protein 17	FBXO17	115290	ENSG00000269190			Fbxo17 (MGI:1354707)
chr19	39007063	39032595	19q13.2	19q13.2	609099	FBXO27, FBX27, FBG5	F-box only protein 27	FBXO27	126433	ENSG00000161243			Fbxo27 (MGI:2685007)
chr19	39083010	39112073	19q13.2	19q13.2	610490	PAPL, FLJ16165	Purple acid phosphatase, long form	ACP7	390928	ENSG00000183760			Acp7 (MGI:2142121)
chr19	39125779	39179405	19q13.2	19q13.2	605451	PAK4	p21-activated kinase 4	PAK4	10298	ENSG00000130669			Pak4 (MGI:1917834)
chr19	39196963	39201881	19q13.2	19q13.2	615901	NCCRP1, FBXO50	Nonspecific cytotoxic cell receptor protein 1, zebrafish, homolog of	NCCRP1	342897	ENSG00000188505			Nccrp1 (MGI:2685009)
chr19	39243605	39245076	19q13.13	19q13.2	607402	IFNL3, IL28B	Interferon, lambda 3	IFNL3	282617	ENSG00000197110		{Hepatitis C virus infection, response to therapy of}, 609532 (3)	Ifnl2,Ifnl3 (MGI:3647279,MGI:2450574)
chr19	39246313	39248855	19q13.13	19q13.2	615090	IFNL4	Interferon, lambda-4	IFNL4	101180976	ENSG00000272395			
chr19	39268516	39270091	19q13.13	19q13.2	607401	IFNL2, IL28A	Interferon, lambda 2	IFNL2	282616	ENSG00000183709			
chr19	39296324	39298671	19q13.13	19q13.2	607403	IFNL1, IL29	Interferon, lambda 1	IFNL1	282618	ENSG00000182393			
chr19	39306816	39320866	19q13.2	19q13.2	612807	LRFN1, SALM2, KIAA1484	Leucine-rich repeat and fibronectin type III domain-containing protein 1	LRFN1	57622	ENSG00000128011			Lrfn1 (MGI:2136810)
chr19	39328356	39336085	19q13.2	19q13.2	604104	GMFG	Glia maturation factor, gamma	GMFG	9535	ENSG00000130755			Gmfg,Gmfg-ps (MGI:1927135,MGI:3704264)
chr19	39385628	39391194	19q13.2	19q13.2	610506	PAF1, PD2	PAF1 RNA polymerase II-associated factor, S. cerevisiae, homolog of	PAF1	54623	ENSG00000006712			Paf1 (MGI:1923988)
chr19	39391302	39400636	19q13.2	19q13.2	612914	MED29, IXL	Mediator complex subunit 29	MED29	55588	ENSG00000063322			Med29 (MGI:1914474)
chr19	39406846	39409411	19q13.1	19q13.2	190700	ZFP36, TTP	Zfp36, mouse, homolog of	ZFP36	7538	ENSG00000128016			Zfp36 (MGI:99180)
chr19	39412581	39428414	19q13.1	19q13.2	611893	PLEKHG2, CLG, LDAMD	Pleckstrin homology domain-containing protein, family G, member 2	PLEKHG2	64857	ENSG00000090924		Leukodystrophy and acquired microcephaly with or without dystonia, 616763 (3), Autosomal recessive	Plekhg2 (MGI:2141874)
chr19	39433136	39436019	19q	19q13.2	603675	RPS16	Ribosomal protein S16	RPS16	6217	ENSG00000105193			Rps16 (MGI:98118)
chr19	39445545	39476669	19q13.1-q13.2	19q13.2	602102	SUPT5H, SPT5	Suppressor of Ty 5, S. cerevisiae, homolog of	SUPT5H	6829	ENSG00000196235			Supt5 (MGI:1202400)
chr19	39480411	39493784	19q13.2	19q13.2	607381	TIMM50, TIM50, MGCA9	Translocase of inner mitochondrial membrane 50, yeast, homolog of	TIMM50	92609	ENSG00000105197		3-methylglutaconic aciduria, type IX, 617698 (3), Autosomal recessive	Timm50 (MGI:1913775)
chr19	39498916	39508480	19q13	19q13.2	602768	DLL3, SCDO1	Delta, Drosophila, homolog of	DLL3	10683	ENSG00000090932		Spondylocostal dysostosis 1, autosomal recessive, 277300 (3), Autosomal recessive	Dll3 (MGI:1096877)
chr19	39515112	39520685	19q13.13	19q13.2	607919	SELENOV, SELV	Selenoprotein V	SELENOV	348303	ENSG00000186838			Selenov (MGI:3608324)
chr19	39538805	39540197	19q13.2	19q13.2	609773	EID2, CRI2	EP300-interacting inhibitor of differentiation 2	EID2	163126	ENSG00000176396			Eid2 (MGI:2681174)
chr19	39602410	39607473	19q13.1	19q13.2	608717	LGALS13, GAL13, PP13	Lectin, galactoside-binding, soluble, 13	LGALS13	29124	ENSG00000105198			
chr19	39704305	39709447	19q13.2	19q13.2	607260	PPL13	Placental protein 13-like protein	LGALS14	56891	ENSG00000006659			
chr19	39731252	39738028	19q13.1	19q13.2	153310	CLC	Charcot-Leyden crystal protein	CLC	1178	ENSG00000105205			
chr19	39825346	39834232	19q12-q13.11	19q13.2	604556	DYRK1B, MIRK, AOMS3	Dual-specificity tyrosine phosphorylation-regulated kinase 1B	DYRK1B	9149	ENSG00000105204		Abdominal obesity-metabolic syndrome 3, 615812 (3), Autosomal dominant	Dyrk1b (MGI:1330302)
chr19	39834452	39846413	19q13.2	19q13.2	134795	FBL	Fibrillarin	FBL	2091	ENSG00000105202			Fbl (MGI:95486)
chr19	39863322	39934625	19q13.2	19q13.2	617553	FCGBP	Fc fragment of IgG-binding protein	FCGBP	8857	ENSG00000275395			Fcgbp (MGI:2444336)
chr19	39971004	39981763	19q13.11-q13.13	19q13.2	602707	PSMC4, TBP7, S6	Proteasome 26S subunit, ATPase, 4	PSMC4	5704	ENSG00000013275			Psmc4 (MGI:1346093)
chr19	40191656	40215574	19q13.1-q13.2	19q13.2	600137	MAP3K10, MLK2, MST	Mitogen-activated protein kinase kinase kinase 10	MAP3K10	4294	ENSG00000130758			Map3k10 (MGI:1346879)
chr19	40230316	40285530	19q13.1-q13.2	19q13.2	164731	AKT2, HIHGHH	Murine thymoma viral (v-akt) homolog-2	AKT2	208	ENSG00000105221		Diabetes mellitus, type II, 125853 (3), Autosomal dominant; Hypoinsulinemic hypoglycemia with hemihypertrophy, 240900 (3), Autosomal dominant	Akt2 (MGI:104874)
chr19	40348394	40378489	19q13.2	19q13.2	615698	PLD3, HUK4, SCA46	Phospholipase D family, member 3	PLD3	23646	ENSG00000105223	mutation identified in 1 SCA46 family	?Spinocerebellar ataxia 46, 617770 (3), Autosomal dominant	Pld3 (MGI:1333782)
chr19	40379270	40390864	19q13.2	19q13.2	611712	HIPK4	Homeodomain-interacting protein kinase 4	HIPK4	147746	ENSG00000160396			Hipk4 (MGI:2685008)
chr19	40393761	40414717	19q13.1-q13.2	19q13.2	605725	PRX, CMT4F	Periaxin	PRX	57716	ENSG00000105227		Charcot-Marie-Tooth disease, type 4F, 614895 (3), Autosomal recessive; Dejerine-Sottas disease, 145900 (3), Autosomal recessive, Autosomal dominant	Prx (MGI:108176)
chr19	40422500	40426024	19q13.2	19q13.2	617850	SERTAD1, TRIPBR1	SERTA domain-containing protein 1	SERTAD1	29950	ENSG00000197019			Sertad1 (MGI:1913438)
chr19	40440840	40444374	19q13.1	19q13.2	612125	SERTAD3, RBT1	SERTA domain-containing 3	SERTAD3	29946	ENSG00000167565			Sertad3 (MGI:2180697)
chr19	40447783	40465817	19q13.13-q13.2	19q13.2	600941	BLVRB, BVRB, FLR	Biliverdin reductase B	BLVRB	645	ENSG00000090013			Blvrb (MGI:2385271)
chr19	40467152	40576458	19q13.13	19q13.2	606214	SPTBN4, QV, CMND	Spectrin, beta, nonerythrocytic, 4 (quivering, mouse, homolog of)	SPTBN4	57731	ENSG00000160460	mutation identified in 1 CMND patient	?Myopathy, congenital, with neuropathy and deafness, 617519 (3), Autosomal recessive	Sptbn4 (MGI:1890574)
chr19	40576850	40591398	19q13.2	19q13.2	617322	SHKBP1, SB1	SH3KBP1-binding protein 1	SHKBP1	92799	ENSG00000160410			Shkbp1 (MGI:2385803)
chr19	40592887	40629819	19q13.1-q13.2	19q13.2	604710	LTBP4, LTBP4S, LTBP4L, ARCL1C	Latent transforming growth factor-beta-binding protein 4	LTBP4	8425	ENSG00000090006		Cutis laxa, autosomal recessive, type IC, 613177 (3), Autosomal recessive	Ltbp4 (MGI:1321395)
chr19	40665904	40690657	19q13.13-q13.2	19q13.2	604018	NUMBL, NUMBR, NBL	Numb, Drosophila, homolog-like	NUMBL	9253	ENSG00000105245			Numbl (MGI:894702)
chr19	40691528	40716884	19q13.1	19q13.2	615567	COQ8B, ADCK4, NPHS9	Coenzyme Q8B	COQ8B	79934	ENSG00000123815		Nephrotic syndrome, type 9, 615573 (3), Autosomal recessive	Coq8b (MGI:1924139)
chr19	40717102	40740859	19q13.2	19q13.2	606476	ITPKC	Inositol 1,4,5-trisphosphate 3-kinase C	ITPKC	80271	ENSG00000086544		{Kawasaki disease, susceptibility to}, 611775 (3)	Itpkc (MGI:2442554)
chr19	40750853	40765391	19q13.1	19q13.2	182285	SNRPA	Small nuclear ribonucleoprotein polypeptide A	SNRPA	6626	ENSG00000077312			
chr19	40775176	40777492	19q13.32-q13.33	19q13.2	601340	MIA	Melanoma inhibitory activity	MIA	8190	ENSG00000261857			Mia (MGI:109615)
chr19	40778218	40796943	19q13.2-q13.3	19q13.2	612945	RAB4B	Ras-associated protein RAB4B	RAB4B	53916	ENSG00000167578			Rab4b (MGI:105071)
chr19	40799142	40808440	19q13.2	19q13.2	606424	EGLN2, PHD1, HIFPH1	Egl9, C. elegans, homolog of, 2	EGLN2	112398	ENSG00000269858			Egln2 (MGI:1932287)
chr19	40843537	40850446	19q13.2	19q13.2	122720	CYP2A6, CYP2A3, CYP2A, P450C2A	Cytochrome P450, subfamily IIA, phenobarbital-inducible, polypeptide 6	CYP2A6	1548	ENSG00000255974		Coumarin resistance, 122700 (3), Autosomal dominant; {Lung cancer, resistance to}, 211980 (3), Autosomal recessive; {Nicotine addiction, protection from}, 188890 (3)	Cyp2a4,Cyp2a5 (MGI:88597,MGI:88596)
chr19	40875438	40885950	19q13.2	19q13.2	608054	CYP2A7	Cytochrome P450, subfamily IIA, polypeptide 7	CYP2A7	1549	ENSG00000198077			Cyp2a4,Cyp2a5 (MGI:88597,MGI:88596)
chr19	40890825	40900507	19q13.2	19q13.2	601133	CYP2G1	Cytochrome P450, subfamily IIG, polypeptide 1	CYP2G1P	22952				
chr19	40991298	41018395	19q13.2	19q13.2	123930	CYP2B6, CYP2B, EFVM	Cytochrome P450, family 2, subfamily B, polypeptide 6	CYP2B6	1555	ENSG00000197408	same NotI fragment as CYP2A	{Efavirenz central nervous system toxicity, susceptibility to}, 614546 (3); Efavirenz, poor metabolism of, 614546 (3)	Cyp2b10 (MGI:88598)
chr19	41088450	41096194	19q13.2	19q13.2	608055	CYP2A13	Cytochrome P450, subfamily IIA, polypeptide 13	CYP2A13	1553	ENSG00000197838			Cyp2a4,Cyp2a5 (MGI:88597,MGI:88596)
chr19	41114291	41128380	19q13.2	19q13.2	124070	CYP2F1	Cytochrome P450, subfamily IIF, polypeptide 1	CYP2F1	1572	ENSG00000197446	CYP2A, CYP2B, CYP2F1 in 240kb		Cyp2f2 (MGI:88608)
chr19	41193206	41207538	19q13.2	19q13.2	611529	CYP2S1	Cytochrome P450, family 2, subfamily S, polypeptide 1	CYP2S1	29785	ENSG00000167600			Cyp2s1 (MGI:1921384)
chr19	41219198	41261766	19q13.1-q13.2	19q13.2	109135	AXL	AXL transforming sequence (a receptor tyrosine kinase)	AXL	558	ENSG00000167601			Axl (MGI:1347244)
chr19	41262475	41307782	19q13.2	19q13.2	605800	HNRNPUL1, HNRPUL1, E1BAP5	Heterogeneous nuclear ribonucleoprotein U-like 1	HNRNPUL1	11100	ENSG00000105323			Hnrnpul1 (MGI:2443517)
chr19	41330322	41353882	19q13.1	19q13.2	190180	TGFB1, DPD1, CED	Transforming growth factor, beta-1	TGFB1	7040	ENSG00000105329		Camurati-Engelmann disease, 131300 (3), Autosomal dominant; {Cystic fibrosis lung disease, modifier of}, 219700 (3), Autosomal recessive	Tgfb1 (MGI:98725)
chr19	41354416	41364533	19q13.2	19q13.2	611951	B9D2, MKS10, JBTS34	B9 domain-containing protein 2	B9D2	80776	ENSG00000123810	mutation identified in 1 MKS10 family	Joubert syndrome 34, 614175 (3), Autosomal recessive; ?Meckel syndrome 10, 614175 (3), Autosomal recessive	B9d2 (MGI:2387643)
chr19	41386369	41397350	19q13.2	19q13.2	606492	EXOSC5, RRP46	Exosome component 5	EXOSC5	56915	ENSG00000077348			Exosc5 (MGI:107889)
chr19	41397788	41425004	19q13.1-q13.2	19q13.2	608348	BCKDHA, MSUD1	Branched chain keto acid dehydrogenase E1, alpha polypeptide	BCKDHA	593	ENSG00000248098		Maple syrup urine disease, type Ia, 248600 (3), Autosomal recessive	Bckdha (MGI:107701)
chr19	41425358	41429023	19q13.2	19q13.2	615357	B3GNT8, BGALT15, B3GALT7	Beta-1,3-galactosyltransferase 8	B3GNT8	374907	ENSG00000177191			B3gnt8 (MGI:2385269)
chr19	41431317	41447821	19q13.2	19q13.2	617262	ATP5SL	ATP5S-like protein	DMAC2	55101	ENSG00000105341			Dmac2 (MGI:1913599)
chr19	41708584	41730432	19q13.2	19q13.2	114890	CEACAM5, CEA	Carcinoembryonic antigen-related cell adhesion molecule 5	CEACAM5	1048	ENSG00000105388	proximal to PSG cluster in 1.1-1.2Mb segment		
chr19	41755519	41772210	19q13.2	19q13.2	163980	CEACAM6, NCA	Carcinoembryonic antigen-related cell adhesion molecule 6 (non-specific crossreacting antigen)	CEACAM6	4680	ENSG00000086548	in CEA cluster		
chr19	41844742	41852329	19q13.2	19q13.2	614806	DMRTC2	Doublesex- and MAB3-related transcription factor C2	DMRTC2	63946	ENSG00000142025			Dmrtc2 (MGI:1918491)
chr19	41859917	41871415	19q13.2	19q13.2	603474	RPS19, DBA, DBA1	Ribosomal protein S19	RPS19	6223	ENSG00000105372		Diamond-Blackfan anemia 1, 105650 (3), Autosomal dominant	Rps19 (MGI:1333780)
chr19	41877119	41881371	19q13.2	19q13.2	112205	CD79A, IGA	CD79A antigen (immunoglobulin-associated alpha)	CD79A	973	ENSG00000105369		Agammaglobulinemia 3, 613501 (3), Autosomal recessive	Cd79a (MGI:101774)
chr19	41883199	41907451	19q13.13	19q13.2	601855	ARHGEF1, LBCL2	Rho guanine nucleotide exchange factor, 115-kD	ARHGEF1	9138	ENSG00000076928			Arhgef1 (MGI:1353510)
chr19	41956680	41959375	19q13.2	19q13.2	604925	PRA1	Prenylated RAB acceptor 1	RABAC1	10567	ENSG00000105404			Rabac1 (MGI:1201692)
chr19	41966581	41994275	19q12-q13.2	19q13.2	182350	ATP1A3, DYT12, RDP, AHC2, CAPOS	ATPase, Na+K+ transporting, alpha-3 polypeptide	ATP1A3	478	ENSG00000105409		Alternating hemiplegia of childhood 2, 614820 (3), Autosomal dominant; CAPOS syndrome, 601338 (3), Autosomal dominant; Dystonia-12, 128235 (3), Autosomal dominant	Atp1a3 (MGI:88107)
chr19	41998315	42071803	19q13.2	19q13.2	600283	GRIK5	Glutamate receptor, ionotropic, kainate 5	GRIK5	2901	ENSG00000105737			Grik5 (MGI:95818)
chr19	42086109	42197930	19q13.2	19q13.2	164176	POU2F2, OTF2, OCT2	POU domain, class 2, transcription factor 2	POU2F2	5452	ENSG00000028277			Pou2f2 (MGI:101897)
chr19	42198592	42220151	19q13.2	19q13.2	617078	DEDD2, FLAME3	Death effector domain-containing protein 2	DEDD2	162989	ENSG00000160570			Dedd2 (MGI:1914629)
chr19	42220270	42227052	19q13.2	19q13.2	614387	ZNF526, KIAA1951	Zinc finger protein 526	ZNF526	116115	ENSG00000167625			Zfp526 (MGI:2445181)
chr19	42247560	42255163	19q13.1	19q13.2	611888	ERF, PE2, CRS4, CHYTS	ETS2 repressor factor	ERF	2077	ENSG00000105722		Chitayat syndrome, 617180 (3), Autosomal dominant; Craniosynostosis 4, 600775 (3), Autosomal dominant	Erf (MGI:109637)
chr19	42268536	42295795	19q13.2	19q13.2	612082	CIC, KIAA0306, MRD45	Capicua, Drosophila, homolog of	CIC	23152	ENSG00000079432		Mental retardation, autosomal dominant 45, 617600 (3), Autosomal dominant	Cic (MGI:1918972)
chr19	42297032	42302799	19q13.1	19q13.2	603074	PAFAH1B3	Platelet-activating factor acetylhydrolase, isoform Ib, gamma subunit	PAFAH1B3	5050	ENSG00000079462			Pafah1b3 (MGI:108414)
chr19	42325608	42378768	19q12	19q13.2	604267	MEGF8, EGFL4, CRPT2	Multiple epidermal growth factor-like domains 8	MEGF8	1954	ENSG00000105429		Carpenter syndrome 2, 614976 (3), Autosomal recessive	Megf8 (MGI:2446294)
chr19	42387018	42390317	19q13	19q13.2	611764	CNFN	Cornifelin	CNFN	84518	ENSG00000105427			Cnfn (MGI:1919633)
chr19	42401506	42427425	19q13.1-q13.2	19q13.2	151750	LIPE, LHS, FPLD6	Lipase E, hormone-sensitive	LIPE	3991	ENSG00000079435		Lipodystrophy, familial partial, type 6, 615980 (3), Autosomal recessive	Lipe (MGI:96790)
chr19	42428537	42443047	19q11	19q13.2	611387	CXCL17, VCC1, DMC	Chemokine (C-X-C motif) ligand 17	CXCL17	284340	ENSG00000189377			Cxcl17 (MGI:2387642)
chr19	42507305	42528508	19q13.2	19q13.2	109770	CEACAM1, BGP	Carcinoembryonic antigen-related cell adhesion molecule 1 (biliary glycoprotein)	CEACAM1	634	ENSG00000079385	in CEA cluster		Ceacam1,Ceacam2 (MGI:1347246,MGI:1347245)
chr19	42580242	42595156	19q13.2	19q13.2	615747	CEACAM8, CD66B, CGM6	Carcinoembryonic antigen-related cell adhesion molecule 8	CEACAM8	1088	ENSG00000124469			
chr19	42721641	42740515	19q13.2	19q13.2	176392	PSG3	Pregnancy-specific beta-1-glycoprotein-3	PSG3	5671	ENSG00000221826			
chr19	42752686	42765691	19q13.2	19q13.2	176397	PSG8	Pregnancy-specific beta-1-glycoprotein-8	PSG8	440533	ENSG00000124467			
chr19	42836996	42855717	19q13.2	19q13.2	176399	PSG10, PSG12	Pregnancy-specific beta-1-glycoprotein-10	PSG10P	653492				
chr19	42866460	42879821	19q13.2	19q13.2	176390	PSG1, PSBG1, B1G1, SP1	Pregnancy-specific beta-1-glycoprotein-1	PSG1	5669	ENSG00000231924	distal to CEA		
chr19	42902081	42917923	19q13.2	19q13.31	176395	PSG6	Pregnancy-specific beta-1-glycoprotein-6	PSG6	5675	ENSG00000170848			
chr19	42924131	42937177	19q13.2	19q13.31	176396	PSG7	Pregnancy-specific beta-1-glycoprotein-7	PSG7	5676	ENSG00000221878			
chr19	43007656	43026478	19q13.2	19q13.31	176401	PSG11, PSG13, PSG14	Pregnancy-specific beta-1-glycoprotein-11	PSG11	5680	ENSG00000243130			
chr19	43064209	43082740	19q13.2	19q13.31	176391	PSG2, PSBG2	Pregnancy-specific beta-1-glycoprotein-2	PSG2	5670	ENSG00000242221			
chr19	43167742	43186535	19q13.2	19q13.31	176394	PSG5	Pregnancy-specific beta-1-glycoprotein-5	PSG5	5673	ENSG00000204941			
chr19	43192701	43205773	19q13.2	19q13.31	176393	PSG4	Pregnancy-specific beta-1-glycoprotein-4	PSG4	5672	ENSG00000243137			
chr19	43253281	43269562	19q13.2	19q13.31	176398	PSG9, PSG11	Pregnancy-specific beta-1-glycoprotein-9	PSG9	5678	ENSG00000183668			
chr19	43349055	43349547	19q13.2	19q13.31	605157	PRG1	p53-responsive gene 1		23574				
chr19	43353658	43366062	19q13.2	19q13.31	162860	NB1, PRV1, CD177, HNA2A	Neutrophil-specific antigen 1	CD177	57126	ENSG00000204936			Cd177 (MGI:1916141)
chr19	43388610	43418614	19q13.31	19q13.31	612665	TEX101, SGRG, TES101RP	Testis-expressed gene 101	TEX101	83639	ENSG00000131126			Tex101 (MGI:1930791)
chr19	43460793	43465678	19q13.1-q13.2	19q13.31	609484	LYPD3	LY6/PLAUR domain-containing protein 3	LYPD3	27076	ENSG00000124466			Lypd3 (MGI:1919684)
chr19	43506718	43527255	19q13.32	19q13.31	608451	ETHE1, HSCO, D83198	ETHE1 gene	ETHE1	23474	ENSG00000105755		Ethylmalonic encephalopathy, 602473 (3), Autosomal recessive	Ethe1 (MGI:1913321)
chr19	43543311	43575577	19q13.2	19q13.31	194360	XRCC1, SCAR26	X-ray-repair, complementing defective, repair in Chinese hamster cells-1	XRCC1	7515	ENSG00000073050	mutation identified in 1 SCAR26 patient	?Spinocerebellar ataxia, autosomal recessive 26, 617633 (3), Autosomal recessive	Xrcc1 (MGI:99137)
chr19	43622367	43641983	19q13.2	19q13.31	609744	CADM4, IGSF4C, TSLL2, NECL4, SYNCAM4	Cell adhesion molecule 4	CADM4	199731	ENSG00000105767			Cadm4 (MGI:2449088)
chr19	43646094	43670345	19q13	19q13.31	173391	PLAUR, URKR	Plasminogen activator, urokinase, receptor	PLAUR	5329	ENSG00000011422			Plaur (MGI:97612)
chr19	43727991	43755035	19q13.31	19q13.31	613176	C19orf61, SMG9, HBMS	Chromosome 19 open reading frame 61	SMG9	56006	ENSG00000105771		Heart and brain malformation syndrome, 616920 (3), Autosomal recessive	Smg9 (MGI:1919247)
chr19	43766532	43782138	19q13.2	19q13.31	602754	KCNN4, KCA4, SK4, DHS2	Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4	KCNN4	3783	ENSG00000104783		Dehydrated hereditary stomatocytosis 2, 616689 (3), Autosomal dominant	Kcnn4 (MGI:1277957)
chr19	43912623	43935314	19q13.2	19q13.31	194554	ZNF45, ZNF13, KOX5	Zinc finger protein-45	ZNF45	7596	ENSG00000124459			
chr19	43967005	43998325	19q13.2-q13.32	19q13.31	604086	ZNF155	Zinc finger protein-155	ZNF155	7711	ENSG00000204920			
chr19	44025323	44033109	19q13.2	19q13.31	617357	ZNF222	Zinc finger protein 222	ZNF222	7673	ENSG00000159885			
chr19	44094328	44109830	19q13.2-qter	19q13.31	194555	ZNF224, ZNF255, BMZF2, KOX22, ZNF27	Zinc finger protein-224	ZNF224	7767	ENSG00000267680			
chr19	44141529	44160308	19q13.31	19q13.31	604750	ZNF234, ZNF269, HZF4	Zinc finger protein 234	ZNF234	10780	ENSG00000263002			
chr19	44286347	44305706	19q13.2	19q13.31	604749	ZFP93, ANF270, HZF6	Zinc finger protein 93, mouse, homolog of	ZNF235	9310	ENSG00000159917			Zfp235 (MGI:1929117)
chr19	44326552	44367214	19p13.1-p12	19q13.31	603994	ZNF112	Zinc finger protein-112	ZNF112	7771	ENSG00000062370			Zfp112 (MGI:1929115)
chr19	44474427	44500538	19q13.2	19q13.31	606740	ZNF180	Zinc finger protein-180	ZNF180	7733	ENSG00000167384			Zfp180 (MGI:1923701)
chr19	44643797	44666160	19q13.2-q13.3	19q13.31	173850	PVR, PVS	Polio virus receptor	PVR	5817	ENSG00000073008			
chr19	44699150	44710713	19q13.31	19q13.31-q13.32	614591	CEACAM16, CEAL2, DFNA4B	Carcinoembryonic antigen-related cell adhesion molecule 16	CEACAM16	388551	ENSG00000213892		Deafness, autosomal dominant 4B, 614614 (3), Autosomal dominant	Ceacam16 (MGI:2685615)
chr19	44742619	44760043	19q13	19q13.32	109560	BCL3	B-cell CLL/lymphoma-3	BCL3	602	ENSG00000069399		Leukemia/lymphoma, B-cell, 3, 109560 (2)	Bcl3 (MGI:88140)
chr19	44777854	44800645	19q13.2	19q13.32	608453	CBLC	CAS-BR-M murine ecotropic retroviral transforming sequence C	CBLC	23624	ENSG00000142273			Cblc (MGI:1931457)
chr19	44809058	44821420	19q13.2	19q13.32	612773	LU, AU, BCAM	B-cell adhesion molecule	BCAM	4059	ENSG00000187244	linked to SE	[Blood group, Auberger system], 111200 (3); [Blood group, Lutheran null], 247420 (3), Autosomal recessive; [Blood group, Lutheran system], 111200 (3)	Bcam (MGI:1929940)
chr19	44846135	44889227	19q13.2	19q13.32	600798	NECTIN2, PVRL2, HVEB, PVRR2, PRR2	Nectin 2	NECTIN2	5819	ENSG00000130202			Nectin2 (MGI:97822)
chr19	44891219	44903688	19q13.2	19q13.32	608061	TOMM40, TOM40, PEREC1	Translocase of outer mitochondrial membrane 40, yeast, homolog of	TOMM40	10452	ENSG00000130204			Tomm40 (MGI:1858259)
chr19	44905748	44909394	19q13.2	19q13.32	107741	APOE, AD2, LPG, LDLCQ5	Apolipoprotein E	APOE	348	ENSG00000130203	possible 2nd locus for AD2 on chr.19	Alzheimer disease-2, 104310 (3), Autosomal dominant; {Coronary artery disease, severe, susceptibility to}, 617347 (3); Hyperlipoproteinemia, type III, 617347 (3); Lipoprotein glomerulopathy, 611771 (3); {?Macular degeneration, age-related}, 603075 (3), Autosomal dominant; Sea-blue histiocyte disease, 269600 (3), Autosomal recessive	Apoe (MGI:88057)
chr19	44914246	44919348	19q13.2	19q13.32	107710	APOC1	Apolipoprotein C-I	APOC1	341	ENSG00000130208			
chr19	44942237	44945495	19q13.2	19q13.32	600745	APOC4	Apolipoprotein C-IV	APOC4	346	ENSG00000267467	555bp upstream of APOC2		Apoc4 (MGI:87878)
chr19	44945981	44949564	19q13.2	19q13.32	608083	APOC2	Apolipoprotein C-II	APOC2	344	ENSG00000234906		Hyperlipoproteinemia, type Ib, 207750 (3), Autosomal recessive	Apoc2 (MGI:88054)
chr19	44954584	44993345	19q13.3	19q13.32	604783	CLPTM1	Cleft lip and palate-associated transmembrane protein 1	CLPTM1	1209	ENSG00000104853			Clptm1 (MGI:1927155)
chr19	45001448	45038197	19q13.32	19q13.32	604758	RELB, IREL, IMD53	v-rel avian reticuloendotheliosis viral oncogene homolog B	RELB	5971	ENSG00000104856	mutation identified in 1 IMD53 family	?Immunodeficiency 53, 617585 (3), Autosomal recessive	Relb (MGI:103289)
chr19	45071499	45076587	19q13.32	19q13.32	613226	ZNF296, ZFP296, ZNF342	Zinc finger protein 296	ZNF296	162979	ENSG00000170684			Zfp296 (MGI:1926956)
chr19	45075716	45091523	19q13.32	19q13.32	607419	GEMIN7	GEM-associated protein 7	GEMIN7	79760	ENSG00000142252			Gemin7 (MGI:1916981)
chr19	45162927	45179265	19q13.32	19q13.32	610396	TRAPPC6A	Trafficking protein particle complex, subunit 6A	TRAPPC6A	79090	ENSG00000007255			Trappc6a (MGI:1914341)
chr19	45178744	45202714	19q13	19q13.32	609762	BLOC1S3, BLOS3, HPS8	Biogenesis of lysosome-related organelles complex 1, subunit 3	BLOC1S3	388552	ENSG00000189114		Hermansky-Pudlak syndrome 8, 614077 (3), Autosomal recessive	Bloc1s3 (MGI:2678952)
chr19	45212376	45234210	19q13.32	19q13.32	616927	EXOC3L2, XTP7	Exocyst complex component 3-like 2	EXOC3L2	90332	ENSG00000283632			Exoc3l2 (MGI:1921713)
chr19	45251257	45305282	19q13.2	19q13.32	606495	MARK4, KIAA1860, MARKL1	Map/microtubule affinity-regulating kinase-4	MARK4	57787	ENSG00000007047			Mark4 (MGI:1920955)
chr19	45306412	45322976	19q13	19q13.32	123310	CKM, CKMM	Creatine kinase, muscle type	CKM	1158	ENSG00000104879			Ckm (MGI:88413)
chr19	45340739	45351547	19q13.2-q13.3	19q13.32	601334	KLC3, KLC2L	Kinesin, light chain, 3	KLC3	147700	ENSG00000104892			Klc3 (MGI:1277971)
chr19	45349836	45370646	19q13.2-q13.3	19q13.32	126340	ERCC2, EM9, XPD, COFS2, TTD1	Excision repair cross complementing rodent repair deficiency, complementation group-2	ERCC2	2068	ENSG00000104884	< 250kb from ERCC1; mutation identified in 1 COFS2 patient	?Cerebrooculofacioskeletal syndrome 2, 610756 (3), Autosomal recessive; Trichothiodystrophy 1, photosensitive, 601675 (3), Autosomal recessive; Xeroderma pigmentosum, group D, 278730 (3), Autosomal recessive	Ercc2 (MGI:95413)
chr19	45379633	45406348	19q13.32	19q13.32	607463	PPP1R13L, RAI, IASPP, NKIP1	Protein phosphatase 1, regulatory subunit 13-like	PPP1R13L	10848	ENSG00000104881			Ppp1r13l (MGI:3525053)
chr19	45406208	45410765	19q13.2-q13.3	19q13.32	107325	CD3EAP, ASE1, PAF49	CD3-epsilon-associated protein	CD3EAP	10849	ENSG00000117877			Cd3eap (MGI:1917583)
chr19	45407332	45478865	19q13.2-q13.3	19q13.32	126380	ERCC1, UV20, COFS4	Excision repair cross complementing rodent repair deficiency, complementation group-1	ERCC1	2067	ENSG00000012061	distal to CKM	Cerebrooculofacioskeletal syndrome 4, 610758 (3), Autosomal recessive	Ercc1 (MGI:95412)
chr19	45467994	45475178	19q13.3	19q13.32	164772	FOSB	Oncogene FOS-B	FOSB	2354	ENSG00000125740			Fosb (MGI:95575)
chr19	45485287	45497054	19q13.3	19q13.32	603183	RTN2, NSPL1, SPG12	Reticulon-2	RTN2	6253	ENSG00000125744		Spastic paraplegia 12, autosomal dominant, 604805 (3), Autosomal dominant	Rtn2 (MGI:107612)
chr19	45507429	45526988	19q13.2-q13.3	19q13.32	601703	VASP	Vasodilator-stimulated phosphoprotein	VASP	7408	ENSG00000125753			Vasp (MGI:109268)
chr19	45527766	45584863	19q13.2-q13.3	19q13.32	606580	OPA3, MGA3	OPA3 gene	OPA3	80207	ENSG00000125741		3-methylglutaconic aciduria, type III, 258501 (3), Autosomal recessive; Optic atrophy 3 with cataract, 165300 (3), Autosomal dominant	Opa3 (MGI:2686271)
chr19	45589763	45602207	19q13.2-q13.3	19q13.32	600551	GPR4	G protein-coupled receptor-4	GPR4	2828	ENSG00000177464			Gpr4 (MGI:2441992)
chr19	45609395	45645628	19q13.32	19q13.32	617494	EML2, EMAP2, ELP70	Echinoderm microtubule-associated protein-like 2	EML2	24139	ENSG00000125746			Eml2 (MGI:1919455)
chr19	45668186	45683723	19q13.3	19q13.32	137241	GIPR, PGQTL2	Gastric inhibitory polypeptide receptor	GIPR	2696	ENSG00000010310		[Plasma glucose, 2-hour, QTL 2], 137241 (2)	Gipr (MGI:1352753)
chr19	45687453	45692315	19q13.32	19q13.32	601061	SNRPD2	Small nuclear ribonucleoprotein polypeptide D2	SNRPD2	6633	ENSG00000125743			Snrpd2 (MGI:98345)
chr19	45710628	45733170	19q13.3	19q13.32	609117	FBXO46, FBX46	F-box only protein 46	FBXO46	23403	ENSG00000177051			Fbxo46 (MGI:2444918)
chr19	45764784	45769238	19q13.3	19q13.32	600963	SIX5, DMAHP, BOR2	Sine oculis homeo box, Drosophila, homolog of, 5	SIX5	147912	ENSG00000177045		Branchiootorenal syndrome 2, 610896 (3)	Six5 (MGI:106220)
chr19	45769708	45782556	19q13.2-q13.3	19q13.32	605377	DMPK, DM, DMK	Dystrophia myotonica-protein kinase	DMPK	1760	ENSG00000104936	distal to APOLP2; distal to CKM	Myotonic dystrophy 1, 160900 (3), Autosomal dominant	Dmpk (MGI:94906)
chr19	45783005	45792801	19q13.3	19q13.32	609857	DMWD, DMRN9	Dystrophia myotonica WD repeat-containing protein	DMWD	1762	ENSG00000185800			Dmwd (MGI:94907)
chr19	45795709	45815346	19q13.3	19q13.32	607548	RSHL1	Radial spokehead-like 1	RSPH6A	81492	ENSG00000104941			Rsph6a (MGI:1927643)
chr19	45815441	45863289	19q13.3	19q13.32	602388	SPK	Symplekin	SYMPK	8189	ENSG00000125755			Sympk (MGI:1915438)
chr19	45864259	45873796	19q13.2-q13.4	19q13.32	602295	FOXA3, HNF3G	Forkhead box A3 (hepatocyte nuclear factor-3, gamma)	FOXA3	3171	ENSG00000170608			Foxa3 (MGI:1347477)
chr19	45883606	45886169	19q13.32	19q13.32	615331	IRF2BP1	Interferon regulatory factor 2-binding protein 1	IRF2BP1	26145	ENSG00000170604			Irf2bp1 (MGI:2442159)
chr19	45890019	45902618	19q13.32	19q13.32	617861	MYPOP	MYB-related transcription factor, partner of profilin	MYPOP	339344	ENSG00000176182			Mypop (MGI:2446472)
chr19	45913213	45914777	19q13.32	19q13.32	608228	NANOS2, NOS2	Nanos, Drosophila, homolog of, 2	NANOS2	339345	ENSG00000188425			Nanos2 (MGI:2676627)
chr19	45933733	45973398	19q13.3	19q13.32	601991	NOVA2, ANOVA	NOVA alternative splicing regulator 2	NOVA2	4858	ENSG00000104967			Nova2 (MGI:104296)
chr19	46019152	46023297	19q13	19q13.32	604963	PGRP, PGRPS	Peptidoglycan recognition protein	PGLYRP1	8993	ENSG00000008438			Pglyrp1 (MGI:1345092)
chr19	46039747	46041015	19p13.3	19q13.32	610547	IGFL4	IGF-like family member 4	IGFL4	444882	ENSG00000204869			
chr19	46078512	46215361	19p13.3	19q13.32	610545	IGFL2	IGF-like family member 2	IGFL2	147920	ENSG00000204866			
chr19	46119777	46127100	19p13.3	19q13.32	610546	IGFL3	IGF-like family member 3	IGFL3	388555	ENSG00000188624			Igfl3 (MGI:2685426)
chr19	46229751	46231242	19p13.3	19q13.32	610544	IGFL1	IGF-like family member 1	IGFL1	374918	ENSG00000188293			
chr19	46297045	46343432	19q13.2	19q13.32	609976	HIF3A, IPAS	Hypoxia-inducible factor 3, alpha subunit	HIF3A	64344	ENSG00000124440			Hif3a (MGI:1859778)
chr19	46346993	46390974	19q13.3	19q13.32	600658	PPP5C, PP5	Protein phosphatase-5, catalytic subunit	PPP5C	5536	ENSG00000011485			Ppp5c (MGI:102666)
chr19	46410328	46413661	19q13.2-q13.32	19q13.32	614145	CCDC8, 3M3	Coiled-coil domain-containing protein 8	CCDC8	83987	ENSG00000169515		3-M syndrome 3, 614205 (3), Autosomal recessive	Ccdc8 (MGI:3612184)
chr19	46601073	46610781	19q13.2-q13.3	19q13.32	114183	CALM3	Calmodulin-3	CALM3	808	ENSG00000160014			
chr19	46610039	46625096	19q13.3	19q13.32	600022	PTGIR	Prostaglandin I2 (prostacyclin) receptor (IP)	PTGIR	5739	ENSG00000160013			Ptgir (MGI:99535)
chr19	46647563	46661137	19q13.3	19q13.32	611112	DACT3	Dapper, antagonist of beta-catenin, 3	DACT3	147906	ENSG00000197380			Dact3 (MGI:3654828)
chr19	46674315	46717126	19q13.3	19q13.32	607074	PRKD2, PKD2	Protein kinase D2	PRKD2	25865	ENSG00000105287			Prkd2 (MGI:2141917)
chr19	46719508	46746474	19q13.32	19q13.32	614767	STRN4, ZIN	Striatin, calmodulin-binding protein 4	STRN4	29888	ENSG00000090372			Strn4 (MGI:2142346)
chr19	46746014	46758574	19q13.3	19q13.32	606596	FKRP, MDC1C, LGMD2I, MDDGA5, MDDGB5, MDDGC5	Fukutin-related protein	FKRP	79147	ENSG00000181027		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 5, 613153 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with or without mental retardation), type B, 5, 606612 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (limb-girdle), type C, 5, 607155 (3), Autosomal recessive	Fkrp (MGI:2447586)
chr19	46759684	46788621	19q13.3	19q13.32	109190	SLC1A5, RDRC, M7V1, M7VS1	Solute carrier family 1 (neutral amino acid transporter), member 5 (receptor for RD114/simian type D retroviruses)	SLC1A5	6510	ENSG00000105281			Slc1a5 (MGI:105305)
chr19	46838157	46850994	19q13.2-q13.3	19q13.32	602242	AP2S1, CLAPS2, AP17, HHC3	Adaptor-related protein complex 2, sigma 1 subunit	AP2S1	1175	ENSG00000042753		Hypocalciuric hypercalcemia, type III, 600740 (3), Autosomal dominant	Ap2s1 (MGI:2141861)
chr19	46918566	47005076	19q13.2-q13.4	19q13.32	605277	GRLF1, P190A	Glucocorticoid receptor DNA-binding factor 1	ARHGAP35	2909	ENSG00000160007			Arhgap35 (MGI:1929494)
chr19	47019843	47045774	19q13.2-q13.3	19q13.32	603346	NPAS1, MOP5	Neuronal PAS domain protein 1	NPAS1	4861	ENSG00000130751			Npas1 (MGI:109205)
chr19	47130793	47210635	19q13.32	19q13.32	613294	SAE1, SUA1, AOS1	SUMO1-activating enzyme, subunit 1	SAE1	10055	ENSG00000142230			Sae1 (MGI:1929264)
chr19	47220821	47232997	19q	19q13.32	605854	PUMA	p53-upregulated modulator of apoptosis	BBC3	27113	ENSG00000105327			Bbc3 (MGI:2181667)
chr19	47309846	47322069	19q13.3-q13.4	19q13.32	113995	C5AR1, C5R1, C5AR	Complement component 5a receptor 1	C5AR1	728	ENSG00000197405			C5ar1 (MGI:88232)
chr19	47331613	47342079	19q13.4	19q13.32	609949	C5AR2, GPF77, C5L2	Complement component 5a receptor 2	C5AR2	27202	ENSG00000134830			C5ar2 (MGI:2442013)
chr19	47349280	47382703	19q13.32	19q13.32	615475	DHX34, KIAA0134	DEAH box polypeptide 34	DHX34	9704	ENSG00000134815			Dhx34 (MGI:1918973)
chr19	47428016	47472049	19q13.32	19q13.32	601901	SLC8A2, NCX2	Solute carrier family 8, member 2 (sodium-calcium exchanger 2)	SLC8A2	6543	ENSG00000118160			Slc8a2 (MGI:107996)
chr19	47475140	47486791	19q13.4	19q13.32	615620	KPTN, 2E4, MRT41	Kaptin	KPTN	11133	ENSG00000118162		Mental retardation, autosomal recessive 41, 615637 (3), Autosomal recessive	Kptn (MGI:1890380)
chr19	47487633	47515257	19q13.3	19q13.32-q13.33	603215	NAPA, SNAPA	N-ethylmaleimide-sensitive factor attachment protein, alpha	NAPA	8775	ENSG00000105402			Napa (MGI:104563)
chr19	47608195	47703276	19q13.3	19q13.33	605690	GLTSCR1	Glioma tumor suppressor candidate region gene 1	BICRA	29998	ENSG00000063169			Bicra (MGI:2154263)
chr19	47713343	47743133	19q13.3	19q13.33	605890	EHD2	EH domain-containing 2	EHD2	30846	ENSG00000024422			Ehd2 (MGI:2154274)
chr19	47745535	47757065	19q13.3	19q13.33	605691	GLTSCR2	Glioma tumor suppressor candidate region gene 2	NOP53	29997	ENSG00000105373			Nop53 (MGI:2154441)
chr19	47778571	47784680	19q13.3	19q13.33	603235	SELENOW, SEPW1	Selenoprotein W	SELENOW	6415	ENSG00000178980			Selenow (MGI:1100878)
chr19	47801242	47803603	19q13.32	19q13.33	611166	TPRX1	Tetrapeptide repeat homeobox 1	TPRX1	284355	ENSG00000178928			
chr19	47821839	47843329	19q13.3	19q13.33	602225	CRX, CORD2, CRD, LCA7	Cone-rod homeo box-containing gene	CRX	1406	ENSG00000105392		Cone-rod retinal dystrophy-2, 120970 (3), Autosomal dominant; Leber congenital amaurosis 7, 613829 (3)	Crx (MGI:1194883)
chr19	47870465	47886396	19q13.3	19q13.33	125263	SULT2A1, STD	Sulfotransferase family 2A, dehydroepiandrosterone-preferring, member 1 (DHEA sulfotransferase)	SULT2A1	6822	ENSG00000105398			Sult2a4,Sult2a3,Sult2a1,Sult2a6,Sult2a5 (MGI:98430,MGI:3645854,MGI:3648915,MGI:3648378,MGI:3645873)
chr19	47967257	47992169	19q13.32	19q13.33	612213	BSPH1	Bovine seminal plasma protein-like 1	BSPH1	100131137	ENSG00000188334			Bsph1 (MGI:2685613)
chr19	47994650	48025152	19q13.33	19q13.33	607443	ELSPBP1	Epididymal sperm binding protein 1	ELSPBP1	64100	ENSG00000169393			
chr19	48029382	48048341	19q13.33	19q13.33	607315	CABP5, CABP3	Calcium-binding protein 5	CABP5	56344	ENSG00000105507			Cabp5 (MGI:1352746)
chr19	48047842	48111382	19q13.3	19q13.33	603602	PLA2G4C	Phospholipase A2, group IVC	PLA2G4C	8605	ENSG00000105499			Pla2g4c (MGI:1196403)
chr19	48115444	48170602	19q13.2-q13.3	19q13.33	126391	LIG1	Ligase I, DNA, ATP-dependent	LIG1	3978	ENSG00000105486		DNA ligase I deficiency (3)	Lig1 (MGI:101789)
chr19	48203147	48256263	19q13.3	19q13.33	609051	CARD8, TUCAN, KIAA0955, NDPP1	Caspase recruitment domain-containing protein 8	CARD8	22900	ENSG00000105483			
chr19	48270098	48287607	19q13.33	19q13.33	603996	ZNF114	Zinc finger protein-114	ZNF114	163071	ENSG00000178150			
chr19	48296451	48322792	19q13.3	19q13.33	615038	CCDC114, CILD20	Coiled-coil domain-containing protein 114	CCDC114	93233	ENSG00000105479		Ciliary dyskinesia, primary, 20, 615067 (3), Autosomal recessive	Ccdc114 (MGI:2446120)
chr19	48325371	48330553	19q13.3	19q13.33	602335	EMP3	Epithelial membrane protein 3	EMP3	2014	ENSG00000142227			Emp3 (MGI:1098729)
chr19	48364266	48376376	19q13.3	19q13.33	608373	SYNGR4	Synaptogyrin 4	SYNGR4	23546	ENSG00000105467			Syngr4 (MGI:1928903)
chr19	48382569	48391552	19q13.33	19q13.33	131235	KDELR1, ERD2, HDEL	KDEL endoplasmic reticulum protein retention receptor 1	KDELR1	10945	ENSG00000105438			Kdelr1 (MGI:1915387)
chr19	48394874	48444936	19q13.1-qter	19q13.33	602717	GRIN2D, NMDAR2D, EIEE46	Glutamate receptor, ionotropic, N-methyl-D-aspartate 2D	GRIN2D	2906	ENSG00000105464		Epileptic encephalopathy, early infantile, 46, 617162 (3), Autosomal dominant	Grin2d (MGI:95823)
chr19	48445772	48453906	19q13.3	19q13.33	610597	GRWD1, GRWD, KIAA1942	Glutamate-rich WD repeat-containing protein 1	GRWD1	83743	ENSG00000105447			Grwd1 (MGI:2141989)
chr19	48469207	48482313	19q13	19q13.33	602488	CYTH2, PSCD2, ARNO, PSCD2L	Cytohesin 2	CYTH2	9266	ENSG00000105443			Cyth2 (MGI:1334255)
chr19	48552171	48599426	19q13.3	19q13.33	604125	SULT2B1, ARCI14	Sulfotransferase family 2B, member 1	SULT2B1	6820	ENSG00000088002		Ichthyosis, congenital, autosomal recessive 14, 617571 (3), Autosomal recessive	Sult2b1 (MGI:1926342)
chr19	48606742	48607713	19q13.33	19q13.33	609932	SPACA4, SAMP14	Sperm acrosome-associated protein 4	SPACA4	171169	ENSG00000177202			Spaca4 (MGI:1916613)
chr19	48615326	48619417	19q	19q13.33	604179	RPL18	Ribosomal protein L18	RPL18	6141	ENSG00000063177			Rpl18 (MGI:98003)
chr19	48619290	48630406	19q13.2	19q13.33	607092	SPHK2	Sphingosine kinase 2	SPHK2	56848	ENSG00000063176			Sphk2 (MGI:1861380)
chr19	48630559	48637549	19q13.3	19q13.33	124097	DBP	D site of albumin promoter binding protein	DBP	1628	ENSG00000105516			Dbp (MGI:94866)
chr19	48637941	48646311	19q13.2-q13.3	19q13.33	604644	CA11, CARP2	Carbonic anhydrase XI	CA11	770	ENSG00000063180			Car11 (MGI:1336193)
chr19	48695970	48705933	19q13.3	19q13.33	182100	FUT2, SE, B12QTL1	Fucosyltransferase-2 (secretor)	FUT2	2524	ENSG00000176920	H, SE = alpha-L-fucosyltransferases; from common ancestral genes; tightly linked to FUT1	[Bombay phenotype] (3); {Norwalk virus infection, resistance to} (3); {Vitamin B12 plasma level QTL1}, 612542 (3)	Fut2 (MGI:109374)
chr19	48712440	48719897	19q13.33	19q13.33	610349	MAMSTR, MASTR	MEF2-activating SAP transcriptional regulator	MAMSTR	284358	ENSG00000176909			Mamstr (MGI:1921740)
chr19	48720584	48740832	19q13.33	19q13.33	609623	RASIP1, RAIN	Ras-interacting protein 1	RASIP1	54922	ENSG00000105538			Rasip1 (MGI:1917153)
chr19	48740887	48746908	19q13.33	19q13.33	609278	IZUMO1, MGC34799	Izumo sperm-egg fusion protein 1	IZUMO1	284359	ENSG00000182264			Izumo1 (MGI:1920706)
chr19	48748010	48755389	19q13.3	19q13.33	211100	FUT1, H, HH	Fucosyltransferase-1 (Bombay phenotype)	FUT1	2523	ENSG00000174951	SE tightly linked	[Bombay phenotype], 616754 (3), Autosomal recessive	Fut1 (MGI:109375)
chr19	48755558	48758329	19q13	19q13.33	609436	FGF21	Fibroblast growth factor 21	FGF21	26291	ENSG00000105550			Fgf21 (MGI:1861377)
chr19	48795061	48811062	19q13	19q13.33	113530	BCAT2, BCT2	Branched chain aminotransferase-2, mitochondrial	BCAT2	587	ENSG00000105552		?Hypervalinemia or hyperleucine-isoleucinemia (1)	Bcat2 (MGI:1276534)
chr19	48813013	48836687	19q13.33	19q13.33	612832	HSD17B14, DHRS10, RETSDR3	17-beta-hydroxysteroid dehydrogenase XIV	HSD17B14	51171	ENSG00000087076			Hsd17b14 (MGI:1913315)
chr19	48837091	48868626	19q13.33	19q13.33	607769	PLEKHA4, PEPP1	Pleckstrin homology domain-containing protein, family A, member 4	PLEKHA4	57664	ENSG00000105559			Plekha4 (MGI:1916467)
chr19	48872391	48876061	19q13.2	19q13.33	611048	PPP1R15A, GADD34	Protein phosphatase 1, regulatory subunit 15A	PPP1R15A	23645	ENSG00000087074			Ppp1r15a (MGI:1927072)
chr19	48880816	48900220	19q13.1	19q13.33	602309	TULP2	Tubby-like protein-2	TULP2	7288	ENSG00000104804			Tulp2 (MGI:1861600)
chr19	48900049	48923282	19q13.2-q13.4	19q13.33	601323	NUCB1	Nucleobindin 1	NUCB1	4924	ENSG00000104805			Nucb1 (MGI:97388)
chr19	48954824	48961797	19q13.3-q13.4	19q13.33	600040	BAX	BCL2-associated X protein	BAX	581	ENSG00000087088		Colorectal cancer, somatic, 114500 (3); T-cell acute lymphoblastic leukemia, somatic, 613065 (3)	Bax (MGI:99702)
chr19	48963940	48966878	19q13.3-q13.4	19q13.33	134790	FTL, NBIA3, LFTD	Ferritin, light chain	FTL	2512	ENSG00000087086		Hyperferritinemia-cataract syndrome, 600886 (3), Autosomal dominant; L-ferritin deficiency, dominant and recessive, 615604 (3), Autosomal recessive, Autosomal dominant; Neurodegeneration with brain iron accumulation 3, 606159 (3), Autosomal dominant	Ftl1,Ftl1-ps2 (MGI:5434102,MGI:95589)
chr19	48968124	48993352	19q13.3	19q13.33	138570	GYS1, GYS	Glycogen synthase	GYS1	2997	ENSG00000104812		Glycogen storage disease 0, muscle, 611556 (3), Autosomal recessive	Gys1 (MGI:101805)
chr19	48993447	49015994	19q13.3	19q13.33	604788	RUVBL2, TIP48, ECP51	RUVB, E. coli, homolog-like 2 (TATA box-binding protein-interacting protein)	RUVBL2	10856	ENSG00000183207			Ruvbl2 (MGI:1342299)
chr19	49015979	49017089	19q13.32	19q13.33	152780	LHB, HH23	Luteinizing hormone, beta polypeptide	LHB	3972	ENSG00000104826	beta chains of FSH, TSH on 11p, 1p, respectively	Hypogonadotropic hypogonadism 23 with or without anosmia, 228300 (3), Autosomal recessive	Lhb (MGI:96782)
chr19	49022868	49024374	19q13.32	19q13.33	118860	CGB	Chorionic gonadotropin, beta polypeptide	CGB3	1082	ENSG00000104827	at least 5 genes		
chr19	49035568	49036933	19q13.33	19q13.33	608823	CGB1	Chorionic gonadotropin, beta polypeptide 1	CGB1	114335	ENSG00000267631			
chr19	49054273	49057247	19q13.33	19q13.33	608826	CGB7, CGB6	Chorionic gonadotropin, beta polypeptide 7	CGB7	94027	ENSG00000196337			
chr19	49058283	49065075	19q13.3	19q13.33	162662	NTF4 , NTF5, NT5, NT4, GLC1O	Neurotrophin-4 (neurotrophin-4/5)	NTF4	4909	ENSG00000225950	3 genes, ? functional, also on 19	Glaucoma 1, open angle, 1O, 613100 (3)	Ntf5 (MGI:97381)
chr19	49067417	49072940	19q13.3	19q13.33	176268	KCNA7	Potassium voltage-gated channel, shaker-related subfamily, member 7	KCNA7	3743	ENSG00000104848			Kcna7 (MGI:96664)
chr19	49085139	49108612	19q13.3	19q13.33	180740	SNRP70, U1RNP, RNPU1Z, RPU1	Small nuclear ribonucleoprotein, U1 subunit, 70kD	SNRNP70	6625	ENSG00000104852			Snrnp70 (MGI:98341)
chr19	49114338	49118463	19q13.33	19q13.33	612331	LIN7B, VELI2, MALS2	Lin7, C. elegans, homolog of, B	LIN7B	64130	ENSG00000104863			Lin7b (MGI:1330858)
chr19	49119388	49151029	19q13.33	19q13.33	603144	PPFIA3, LPNA3	Protein tyrosine phosphatase, receptor type, f polypeptide (liprin-alpha-3)	PPFIA3	8541	ENSG00000177380			Ppfia3 (MGI:1924037)
chr19	49151197	49155463	19q13.3	19q13.33	142705	HRC	Histidine-rich calcium-binding protein	HRC	3270	ENSG00000130528			
chr19	49157740	49211840	19q13.32	19q13.33	606936	TRPM4, PFHB1B	Transient receptor potential cation channel, subfamily M, member 4	TRPM4	54795	ENSG00000130529		Progressive familial heart block, type IB, 604559 (3), Autosomal dominant	Trpm4 (MGI:1915917)
chr19	49289631	49332319	19q13.33	19q13.33	607972	SLC6A16, NT5	Solute carrier family 6 (neurotransmitter transporter), member 16	SLC6A16	28968	ENSG00000063127			Slc6a16 (MGI:2685930)
chr19	49334960	49340607	19p13-q13.4	19q13.33	151523	CD37	Leukocyte surface antigen CD37	CD37	951	ENSG00000104894			Cd37 (MGI:88330)
chr19	49340594	49362456	19q13.3	19q13.33	601729	TEAD2, TEF4	TEA domain family member 2	TEAD2	8463	ENSG00000074219			Tead2 (MGI:104904)
chr19	49360519	49375131	19q13.33	19q13.33	605418	DKKL1, SGY1, SGY	Dickkopf-like 1	DKKL1	27120	ENSG00000104901			Dkkl1 (MGI:1354963)
chr19	49422413	49423440	19q13.33	19q13.33	608386	PTH2, TIP39	Parathyroid hormone 2	PTH2	113091	ENSG00000142538			Pth2 (MGI:2152297)
chr19	49429397	49441550	19q13	19q13.33	605208	SLC17A7, BNPI, VGLUT1	Solute carrier family 17, (sodium-dependent inorganic phosphate cotransporter), member 7	SLC17A7	57030	ENSG00000104888			Slc17a7 (MGI:1920211)
chr19	49446292	49452391	19q13.33	19q13.33	611480	PIH1D1, NOP17	PIH1 domain-containing protein 1	PIH1D1	55011	ENSG00000104872			Pih1d1 (MGI:1916095)
chr19	49453215	49471049	19q13.33	19q13.33	613358	ALDH16A1	Aldehyde dehydrogenase 16 family, member A1	ALDH16A1	126133	ENSG00000161618			Aldh16a1 (MGI:1916998)
chr19	49474171	49487036	19q13.33	19q13.33	600007	FLT3LG, FLG3L	FMS-related tyrosine kinase 3 ligand	FLT3LG	2323	ENSG00000090554			Flt3l (MGI:95560)
chr19	49496364	49499711	19q	19q13.33	180471	RPS11	Ribosomal protein S11	RPS11	6205	ENSG00000142534			Rps11 (MGI:1351329)
chr19	49500784	49500867	19q13.33	19q13.33	611114	MIR150, MIRN150	Micro RNA 150	MIR150	406942				
chr19	49512278	49526427	19q13.3	19q13.33	601437	FCGRT	Fc fragment of IgG, receptor, transporter, alpha	FCGRT	2217	ENSG00000104870			Fcgrt (MGI:103017)
chr19	49555467	49580571	19q13.33	19q13.33	616759	NOSIP	Nitric oxide synthase-interacting protein	NOSIP	51070	ENSG00000142546			Nosip (MGI:1913644)
chr19	49580616	49591007	19q13.33	19q13.33	604429	PRRG2, PRGP2	Proline-rich gamma-carboxyglutamic acid protein 2	PRRG2	5639	ENSG00000126460			Prrg2 (MGI:1929596)
chr19	49591176	49626438	19q13.33	19q13.33	616633	PRR12, KIAA1205	Proline-rich protein 12	PRR12	57479	ENSG00000126464			Prr12 (MGI:2679002)
chr19	49635291	49640142	19q13.3-qter	19q13.33	165090	RRAS	Oncogene RRAS	RRAS	6237	ENSG00000126458			Rras (MGI:98179)
chr19	49640480	49658648	19q13.3	19q13.33	617264	SCAF1	SR-related C-terminal domain-associated factor 1	SCAF1	58506	ENSG00000126461			
chr19	49659568	49665874	19q13.3-q13.4	19q13.33	603734	IRF3, IIAE7	Interferon regulatory factor 3	IRF3	3661	ENSG00000126456		{Encephalopathy, acute, infection-induced (herpes-specific), susceptibility to, 7}, 616532 (3), Autosomal dominant	Irf3 (MGI:1859179)
chr19	49664833	49673915	19q13.3	19q13.33	610837	BCL2L12	BCL2-like 12	BCL2L12	83596	ENSG00000126453			Bcl2l12 (MGI:1922986)
chr19	49676165	49688449	19q13	19q13.33	602950	PRMT1, HRMT1L2, IR1B4	Protein arginine methyltransferase 1	PRMT1	3276	ENSG00000126457			Prmt1 (MGI:107846)
chr19	49690671	49713730	19q13.33	19q13.33	608846	CPT1C, SPG73	Carnitine palmitoyltransferase IC	CPT1C	126129	ENSG00000169169	mutation identified in 1 SPG73 family	?Spastic paraplegia 73, autosomal dominant, 616282 (3), Autosomal dominant	Cpt1c (MGI:2446526)
chr19	49766922	49807113	19q13.3	19q13.33	601026	AP2A1, CLAPA1, ADTAA	Adaptor-related protein complex 2, alpha 1 subunit	AP2A1	160	ENSG00000196961	match to PAC AC006942		Ap2a1 (MGI:101921)
chr19	49806865	49817375	19q13	19q13.33	610622	FUZ, NTD	Fuzzy, Drosophila, homolog of	FUZ	80199	ENSG00000010361		Neural tube defects, 182940 (3), Autosomal dominant	Fuz (MGI:1917550)
chr19	49818278	49840383	19q13.3	19q13.33	610197	MED25, PTOV2, ARC92, CMT2B2, BVSYS	Mediator of RNA polymerase II transcription, subunit 25, S. cerevisiae, homolog of	MED25	81857	ENSG00000104973	mutation identified in 1 CMT2B2 family	Basel-Vanagait-Smirin-Yosef syndrome, 616449 (3), Autosomal recessive; ?Charcot-Marie-Tooth disease, type 2B2, 605589 (3), Autosomal recessive	Med25 (MGI:1922863)
chr19	49848553	49860743	19q13.3-q13.4	19q13.33	610195	PTOV1, ACID2	Prostate tumor overexpressed gene 1	PTOV1	53635	ENSG00000104960			Ptov1 (MGI:1933946)
chr19	49861202	49867564	19q13.4	19q13.33	605610	PNKP, PNK, MCSZ, EIEE10, AOA4	Polynucleotide kinase 3' phosphatase	PNKP	11284	ENSG00000039650		Ataxia-oculomotor apraxia 4, 616267 (3), Autosomal recessive; Microcephaly, seizures, and developmental delay, 613402 (3), Autosomal recessive	Pnkp (MGI:1891698)
chr19	49877424	49888749	19q13.33	19q13.33	616659	TBC1D17	TBC1 domain family, member 17	TBC1D17	79735	ENSG00000104946			Tbc1d17 (MGI:2449973)
chr19	49889653	49929538	19q13.3-q13.4	19q13.33	609742	IL4I1, FIG1	Interleukin 4-induced gene 1	IL4I1	259307	ENSG00000104951			Gm21948,Il4i1 (MGI:5439399,MGI:109552)
chr19	49906824	49929730	19q13.33	19q13.33	605815	NUP62, SNDI, IBSN	Nucleoporin, 62-kD	NUP62	23636	ENSG00000213024		Striatonigral degeneration, infantile, 271930 (3), Autosomal recessive	Nup62 (MGI:1351500)
chr19	49928701	49933935	19q13.3	19q13.33	606398	ATF5, ATFX	Activating transcription factor 5	ATF5	22809	ENSG00000169136			Atf5 (MGI:2141857)
chr19	49948824	49961171	19q13.3-q13.4	19q13.33	607157	SIGLEC11	Sialic acid-binding immunoglobulin-like lectin 11	SIGLEC11	114132	ENSG00000161640	pseudogene 8kb upstream		
chr19	50025892	50048775	19q13.33	19q13.33	617908	ZNF473, ZFP100, KIAA1141	Zinc finger protein 473	ZNF473	25888	ENSG00000142528			Zfp473 (MGI:2442697)
chr19	50188185	50310543	19q13.33	19q13.33	608568	MYH14, KIAA2034, DFNA4A, PNMHH	Myosin, heavy chain 14, nonmuscle	MYH14	79784	ENSG00000105357	mutation identified in 1 PNMHH family	Deafness, autosomal dominant 4A, 600652 (3), Autosomal dominant; ?Peripheral neuropathy, myopathy, hoarseness, and hearing loss, 614369 (3), Autosomal dominant	Myh14 (MGI:1919210)
chr19	50311941	50333514	19q13.3-q13.4	19q13.33	176264	KCNC3, SCA13	Potassium voltage-gated channel, Shaw-related subfamily, member 3	KCNC3	3748	ENSG00000131398		Spinocerebellar ataxia 13, 605259 (3), Autosomal dominant	Kcnc3 (MGI:96669)
chr19	50358471	50369330	19q13.33	19q13.33	605631	NAPA, NAP1, SNAPA	Napsin A	NAPSA	9476	ENSG00000131400			Napsa (MGI:109365)
chr19	50376422	50383027	19q13.3	19q13.33	600380	NR1H2, UNR	Nuclear receptor subfamily 1, group H, member 2 (ubiquitously-expressed nuclear receptor)	NR1H2	7376	ENSG00000131408			Nr1h2 (MGI:1352463)
chr19	50384290	50418017	19q13.3-q13.4	19q13.33	174761	POLD1, CRCS10, MDPL	Polymerase (DNA directed), delta 1, catalytic subunit	POLD1	5424	ENSG00000062822		{Colorectal cancer, susceptibility to, 10}, 612591 (3), Autosomal dominant; Mandibular hypoplasia, deafness, progeroid features, and lipodystrophy syndrome, 615381 (3), Autosomal dominant	Pold1 (MGI:97741)
chr19	50418937	50431052	19q13.3-q13.4	19q13.33	606802	SPIB	SPIB transcription factor	SPIB	6689	ENSG00000269404			Spib (MGI:892986)
chr19	50432902	50466325	19q13.33	19q13.33	160793	MYBPC2, MYBPCF	Myosin-binding protein C, fast type	MYBPC2	4606	ENSG00000086967			Mybpc2 (MGI:1336170)
chr19	50476476	50505904	19q13.33	19q13.33	614545	EMC10, C19orf63, HSS1, HSM1	ER membrane protein complex subunit 10	EMC10	284361	ENSG00000161671			Emc10 (MGI:1916933)
chr19	50505996	50511354	19q13.33	19q13.33	615324	JOSD2	Josephin domain-containing protein 2	JOSD2	126119	ENSG00000161677			Josd2 (MGI:1913374)
chr19	50621976	50658113	19q	19q13.33	600327	SYT3	Synaptotagmin-3	SYT3	84258	ENSG00000213023			Syt3 (MGI:99665)
chr19	50659256	50719782	19q13.33	19q13.33	604999	SHANK1, SSTRIP	SH3 and multiple ankyrin repeat domains 1	SHANK1	50944	ENSG00000161681			Shank1 (MGI:3613677)
chr19	50723347	50725723	19q13.3	19q13.33	604713	CLEC11A, SCGF, LSLCL	C-type lectin domain family 11, member A	CLEC11A	6320	ENSG00000105472			Clec11a (MGI:1298219)
chr19	50770463	50771731	19q13.3	19q13.33	603195	GPR32	G protein-coupled receptor-32	GPR32	2854	ENSG00000142511			
chr19	50790414	50795223	19q13	19q13.33	606362	ACPT, AI1J	Acid phosphatase, testicular	ACP4	93650	ENSG00000142513		Amelogenesis imperfecta, type IJ, 617297 (3), Autosomal recessive	Acp4 (MGI:3644563)
chr19	50819145	50823786	19q13.4	19q13.33	147910	KLK1, KLKR	Kallikrein 1	KLK1	3816	ENSG00000167748	~10cM distal to APOC2	[Kallikrein, decreased urinary activity of], 615953 (3)	
chr19	50825288	50834336	19q13.4	19q13.33	610601	KLK15	Kallikrein-related peptidase 15	KLK15	55554	ENSG00000174562			Klk15 (MGI:2447533)
chr19	50854914	50860763	19q13.4	19q13.33	176820	KLK3, APS, PSA	Kallikrein-related peptidase 3	KLK3	354	ENSG00000142515	probably with cluster KLK1, KLK2		Klk1b21,Klk1b9,Klk1b11,Klk1b22,Klk1b8,Klk1,Klk1b5,Klk1b26,Klk1b3,Klk1b24,Klk1b4,Klk1b1,Klk1b16,Klk1b27 (MGI:102850,MGI:95293,MGI:95291,MGI:892019,MGI:892018,MGI:97320,MGI:97322,MGI:892023,MGI:892022,MGI:892021,MGI:892020,MGI:891982,MGI:891980,MGI:891981)
chr19	50873432	50880566	19q13.4	19q13.33	147960	KLK2	Kallikrein-related peptidase 2	KLK2	3817	ENSG00000167751	12kb from APS		
chr19	50900000	58617616	19q13.4-qter		102699	AAVS1	Adeno-associated virus integration site-1	AAVS1	17				
chr19	50900000	58617616	19q13.4		611959	HPC15	Prostate cancer, hereditary, 15		100188868		associated with rs2735839	{Prostate cancer, hereditary, 15}, 611959 (2)	
chr19	50900000	58617616	19q13.4		604937	KIR2DL2, NKAT6	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 2	KIR2DL2	3803				
chr19	50900000	58617616	19q13.4		615727	KIR2DL5B	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 5B	KIR2DL5B	553128				
chr19	50900000	58617616	19q13.4		604952	KIR2DS1	Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 1	KIR2DS1	3806				
chr19	50900000	58617616	19q13.4		604953	KIR2DS2, NKAT5	Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 2	KIR2DS2	100132285				
chr19	50900000	58617616	19q13.4		604954	KIR2DS3, NKAT7	Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 3	KIR2DS3	3808				
chr19	50900000	58617616	19q13.4		604956	KIR2DS5, NKAT9, CD158G	Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 5	KIR2DS5	3810				
chr19	50900000	58617616	19q13.4		604818	LILRA3, LIR4, ILT6, HM43	Leukocyte immunoglobulin-like receptor, subfamily A, member 3	LILRA3	11026				
chr19	50900000	58617616	19q13.4		612884	MENOQ2	Menopause, natural, age at, QTL2		100302517		associated with rs1172822, rs2384687, rs1551562, rs897798	{Menopause, natural, age at, QTL2}, 612884 (2)	
chr19	50906351	50910744	19q13.4	19q13.41	603767	KLK4, EMSP1, PRSS17, AI2A1	Kallikrein-related peptidase 4	KLK4	9622	ENSG00000167749		Amelogenesis imperfecta, type IIA1, 204700 (3), Autosomal recessive	Klk4 (MGI:1861379)
chr19	50943298	50953087	19q13.4	19q13.41	605643	KLK5, SCTE, KLKL2	Kallikrein-related peptidase 5	KLK5	25818	ENSG00000167754			Klk5 (MGI:1915918)
chr19	50958630	50969672	19q13.4	19q13.41	602652	KLK6, PRSS9, ZYME	Kallikrein-related peptidase 6	KLK6	5653	ENSG00000167755			Klk6 (MGI:1343166)
chr19	50976478	50984063	19q13.41	19q13.41	604438	LKL7, PRSS6, SCCE	Kallikrein-related peptidase 7	KLK7	5650	ENSG00000169035			Klk7 (MGI:1346336)
chr19	50996007	51001701	19q13.4	19q13.41	605644	KLK8, TADG14, PRSS19	Kallikrein-related peptidase 8	KLK8	11202	ENSG00000129455			Klk8 (MGI:1343327)
chr19	51002512	51009633	19q13.4	19q13.41	605504	KLK9, KLKL3	Kallikrein-related peptidase 9	KLK9	284366	ENSG00000213022			Klk9 (MGI:1921082)
chr19	51012743	51020174	19q13.4	19q13.41	602673	KLK10, PRSSL1, NES1	Kallikrein-related peptidase 10	KLK10	5655	ENSG00000129451			Klk10 (MGI:1916790)
chr19	51022230	51028033	19q13.4	19q13.41	604434	KLK11, PRSS20, TLSP	Kallikrein-related peptidase 11	KLK11	11012	ENSG00000167757			Klk11 (MGI:1929977)
chr19	51028953	51035649	19q13.4	19q13.41	605539	KLK12, KLKL5	Kallikrein-related peptidase 12	KLK12	43849	ENSG00000186474			Klk12 (MGI:1916761)
chr19	51055625	51065109	19q13.4	19q13.41	605505	KLK13, KLKL4	Kallikrein-related peptidase 13	KLK13	26085	ENSG00000167759			Klk13 (MGI:3615275)
chr19	51077494	51084209	19q13.4	19q13.41	606135	KLK14	Kallikrein-related peptidase 14	KLK14	43847	ENSG00000129437			Klk14 (MGI:2447564)
chr19	51097605	51108389	19q13.33	19q13.41	612694	CTU1, ATPBD3	Cytothiouridylase subunit 1	CTU1	90353	ENSG00000142544			Ctu1 (MGI:2385277)
chr19	51124879	51140479	19q13.4	19q13.41	605640	SIGLEC9	Sialic acid-binding immunoglobulin-like lectin 9	SIGLEC9	27180	ENSG00000129450			Siglece (MGI:1932475)
chr19	51142259	51153525	19q13.3	19q13.41	604410	SIGLEC7, AIRM1	Sialic acid-binding immunoglobulin-like lectin 7	SIGLEC7	27036	ENSG00000168995			
chr19	51211053	51240018	19q13.3-q13.4	19q13.41	159590	CD33	CD33 antigen (gp67)	CD33	945	ENSG00000105383			
chr19	51331535	51342123	19q13.41	19q13.41	617740	VSIG10L	V-set and immunoglobulin domains-containing protein 10-like	VSIG10L	147645	ENSG00000186806			Vsig10l (MGI:1922940)
chr19	51345154	51366417	19q13.3	19q13.41	130410	ETFB, MADD	Electron transfer flavoprotein, beta polypeptide	ETFB	2109	ENSG00000105379		Glutaric acidemia IIB, 231680 (3), Autosomal recessive	Etfb (MGI:106098)
chr19	51379908	51387955	19q13.4	19q13.41	154045	LIM2, MP19, CTRCT19	Lens intrinsic protein 2, 19kD	LIM2	3982	ENSG00000105370	same cosmid as ETFB	Cataract 19, multiple types, 615277 (3), Autosomal recessive	Lim2 (MGI:104698)
chr19	51410020	51417802	19q13.4	19q13.41	606091	SIGLEC10	Sialic acid-binding immunoglobulin-like lectin 10	SIGLEC10	89790	ENSG00000142512			Siglecg (MGI:2443630)
chr19	51450996	51458453	19q13.33-q13.41	19q13.41	605639	SIGLEC8, SAF2, SIGLEC8L	Sialic acid-binding immunoglobulin-like lectin 8	SIGLEC8	27181	ENSG00000105366			Siglecf (MGI:2681107)
chr19	51491226	51501788	19q13.4	19q13.41	606094	SIGLEC12, SIGLECL1, S2V, SLG	Sialic acid-binding immunoglobulin-like lectin 12	SIGLEC12	89858	ENSG00000254521			
chr19	51517818	51531855	19q13.3	19q13.41	604405	SIGLEC6, CD33L, CD33L1, OBBP1	Sialic acid-binding immunoglobulin-like lectin 6	SIGLEC6	946	ENSG00000105492			
chr19	51571236	51589737	19q13.4	19q13.41	601139	ZNF175, OTK18	Zinc finger protein-175	ZNF175	7728	ENSG00000105497			Zfp715 (MGI:1917180)
chr19	51610966	51630473	19q13.3	19q13.41	604200	SIGLEC5, CD33L2, OBBP2	Sialic acid-binding Ig-like lectin 5	SIGLEC5	8778	ENSG00000105501			
chr19	51692611	51692680	19q13.41	19q13.41	614510	MIR99B	Micro RNA 99B	MIR99B	407056				
chr19	51692785	51692863	19q13.41	19q13.41	611250	MIRLET7E, LET7E	Micro RNA Let7e	MIRLET7E	406887				
chr19	51693253	51693338	19q13.33	19q13.41	611191	MIR125A, MIRN125A	Micro RNA 125A	MIR125A	406910				
chr19	51713111	51723991	19q13.3-q13.4	19q13.41	601463	HAS1	Hyaluronan synthase 1	HAS1	3036	ENSG00000105509			Has1 (MGI:106590)
chr19	51745769	51751896	19q13.4	19q13.41	136537	FPR1	Formyl peptide receptor-1	FPR1	2357	ENSG00000171051			Fpr1 (MGI:107443)
chr19	51752025	51770525	19q13.3-q13.4	19q13.41	136538	FPR2, FPRL1, FPRH1, LXA4R, HM63	Formyl peptide receptor 2	FPR2	2358	ENSG00000171049			Fpr2 (MGI:1278319)
chr19	51795145	51826206	19q13.3-q13.4	19q13.41	136539	FPR3, FPRL2, FPRH2	Formyl peptide receptor 3	FPR3	2359	ENSG00000187474			
chr19	51889234	51905051	19q13.41	19q13.41	611903	ZNF649	Zinc finger protein 649	ZNF649	65251	ENSG00000198093			
chr19	51964339	51986855	19q13.41	19q13.41	605422	ZNF350, ZBRK1	Zinc finger protein 350	ZNF350	59348	ENSG00000256683			
chr19	52189801	52226424	19q13.4	19q13.41	605983	PPP2R1A, MRD36	Protein phosphatase 2, structural/regulatory subunit A, alpha	PPP2R1A	5518	ENSG00000105568		Mental retardation, autosomal dominant 36, 616362 (3), Autosomal dominant	Ppp2r1a (MGI:1926334)
chr19	52297168	52325926	19q13.41	19q13.41	613910	ZNF480	Zinc finger protein 480	ZNF480	147657	ENSG00000198464			
chr19	52392751	52418407	19q13.41	19q13.41	615580	ZNF528, KIAA1827	Zinc finger protein 528	ZNF528	84436	ENSG00000167555			
chr19	52596683	52600151	19q13.3-q13.4	19q13.41	604079	ZNF137	Zinc finger protein-137	ZNF137P	7696				
chr19	52612363	52690580	19q13.3-q13.4	19q13.41	194558	ZNF83	Zinc finger protein-83	ZNF83	55769	ENSG00000167766			
chr19	52838531	52857648	19q13.4	19q13.41	616841	ZNF468	Zinc finger protein 468	ZNF468	90333	ENSG00000204604			
chr19	52859490	52897726	19q13.3-q13.4	19q13.41	606427	ZNF320	Zinc finger protein 320	ZNF320	162967	ENSG00000204604			
chr19	53066613	53103433	19q13.3-q13.4	19q13.41-q13.42	600398	ZNF160	Zinc finger protein-160	ZNF160	90338	ENSG00000170949			
chr19	53503818	53580268	19q13.3-q13.4	19q13.42	606043	ZNF331, ZNF463	Zinc finger protein-331	ZNF331	55422	ENSG00000130844			
chr19	53601113	53637056	19q13.42	19q13.42	611165	DPRX	Divergent-paired related homeobox	DPRX	503834	ENSG00000204595	many pseudogenes		
chr19	53707452	53707538	19q13.42	19q13.42	615908	MIR520C	Micro RNA 520C	MIR520C	574476				
chr19	53713346	53713433	19q13.42	19q13.42	614247	MIR519D, MIRN519D	Micro RNA 519D	MIR519D	574480				
chr19	53722165	53722254	19q13.42	19q13.42	616272	MIR520G	Micro RNA 520G	MIR520G	574484				
chr19	53742511	53742598	19q13.42	19q13.42	614755	MIR520H	Micro RNA 520H	MIR520H	574493				
chr19	53787674	53787740	19q13.41	19q13.42	612043	MIR371A	Micro RNA 371A	MIR371A	442916				
chr19	53787889	53787955	19q13.41	19q13.42	612044	MIR372, MIRN372	Micro RNA 372	MIR372	442917				
chr19	53788704	53788772	19q13.41	19q13.42	611954	MIR373, MIRN373	Micro RNA 373	MIR373	442918				
chr19	53793583	53824402	19q13.4	19q13.42	609648	NLRP12, NALP12, PYPAF7, RNO, FCAS2	NLR family, pyrin domain containing 12	NLRP12	91662	ENSG00000142405		Familial cold autoinflammatory syndrome 2, 611762 (3), Autosomal dominant	Nlrp12 (MGI:2676630)
chr19	53865583	53876434	19q13.33-q13.4	19q13.42	609959	MYADM	Myeloid-associated differentiation marker	MYADM	91663	ENSG00000179820			Myadm (MGI:1355332)
chr19	53882183	53907646	19q13.4	19q13.42	176980	PRKCG, PKCC, PKCG, SCA14	Protein kinase C, gamma polypeptide	PRKCG	5582	ENSG00000126583		Spinocerebellar ataxia 14, 605361 (3), Autosomal dominant	Prkcg (MGI:97597)
chr19	53909424	53943943	19q13.4	19q13.42	606899	CACNG7	Calcium channel, voltage-dependent, gamma-7 subunit	CACNG7	59284	ENSG00000105605			Cacng7 (MGI:1932374)
chr19	53963035	53990214	19q13.4	19q13.42	606900	CACNG8	Calcium channel, voltage-dependent, gamma-8 subunit	CACNG8	59283	ENSG00000142408			Cacng8 (MGI:1932376)
chr19	53991148	54012665	19q13.4	19q13.42	606898	CACNG6	Calcium channel, voltage-dependent, gamma-6 subunit	CACNG6	59285	ENSG00000130433			Cacng6 (MGI:1859168)
chr19	54040824	54063965	19q13.4	19q13.42	616804	VSTM1, SIRL1	V-SET and transmembrane domains-containing protein 1	VSTM1	284415	ENSG00000189068			
chr19	54069894	54081364	19q13.4	19q13.42	616802	TARM1	T cell-interacting activating receptor on myeloid cells 1	TARM1	441864	ENSG00000248385			Tarm1 (MGI:2442280)
chr19	54094667	54102685	19q13.4	19q13.42	606862	OSCAR	Osteoclast-associated receptor	OSCAR	126014	ENSG00000170909			Oscar (MGI:2179720)
chr19	54102337	54106973	19q13.42	19q13.42	603832	NDUFA3	NADH-ubiquinone oxidoreductase 1 alpha subcomplex, 3	NDUFA3	4696	ENSG00000170906			Ndufa3 (MGI:1913341)
chr19	54115409	54131718	19q13.4	19q13.42	606419	PRPF31, PRP31, RP11	Precursor RNA-processing factor 31, S. cerevisiae, homolog of	PRPF31	26121	ENSG00000105618		Retinitis pigmentosa 11, 600138 (3), Autosomal dominant	Prpf31 (MGI:1916238)
chr19	54137688	54155707	19q13.4	19q13.42	604910	CNOT3, NOT3	CCR4-NOT transcription complex, subunit 3	CNOT3	4849	ENSG00000088038			Cnot3 (MGI:2385261)
chr19	54160094	54173249	19q13.42	19q13.42	617181	TMC4	Transmembrane channel-like protein 4	TMC4	147798	ENSG00000167608			Tmc4 (MGI:2669035)
chr19	54173411	54189881	19q13.4	19q13.42	606048	MBOAT7, BB1, LENG4, MRT57	Membrane bound O-acyltransferase domain containing 7	MBOAT7	79143	ENSG00000125505		Mental retardation, autosomal recessive 57, 617188 (3), Autosomal recessive	Mboat7 (MGI:1924832)
chr19	54189969	54194535	19q13.4	19q13.42	608754	TSEN34, PCH2C, LENG5, SEN34	tRNA splicing endonuclease 34, S. cerevisiae, homolog of	TSEN34	79042	ENSG00000170892	mutation identified in 1 PCH2C patient	?Pontocerebellar hypoplasia type 2C, 612390 (3)	Tsen34 (MGI:1913328)
chr19	54200556	54207646	19q13.4	19q13.42	603631	RPS9	Ribosomal protein S9	RPS9	6203	ENSG00000170889			Rps9 (MGI:1924096)
chr19	54216277	54223086	19q13.4	19q13.42	604820	LILRB3, LIR3, ILT5, HL9	Leukocyte immunoglobulin-like receptor, subfamily B, member 3	LILRB3	11025	ENSG00000204577			Pira1,Lilra6,Pira2,Gm14548,Pira6,Gm15448,Pirb (MGI:1195970,MGI:1195974,MGI:3705216,MGI:1195971,MGI:894311,MGI:3709645,MGI:1195969)
chr19	54250404	54257307	19q13.2	19q13.42	604814	LILRB5, LIR8	Leukocyte immunoglobulin-like receptor, subfamily B, member 5	LILRB5	10990	ENSG00000105609			
chr19	54273820	54281177	19q13.4	19q13.42	604815	LILRB2, LIR2, ILT4, MIR10	Leukocyte immunoglobulin-like receptor, subfamily B, member 2	LILRB2	10288	ENSG00000131042			
chr19	54307069	54313138	19q13.4	19q13.42	606047	LILRA9, ILT11, CD85F, LIR9	Leukocyte immunoglobulin-like receptor, subfamily A, member 5	LILRA5	353514	ENSG00000187116			Lilra5 (MGI:3647196)
chr19	54333184	54339168	19q13.42	19q13.42	607517	LILRA4, ILT7	Leukocyte immunoglobulin-like receptor, subfamily A, member 4	LILRA4	23547	ENSG00000239961			
chr19	54353623	54370555	19q13.4	19q13.42	602992	LAIR1	Leukocyte-associated immunoglobulin-like receptor 1	LAIR1	3903	ENSG00000167613			Lair1 (MGI:105492)
chr19	54415430	54436718	19q13.4	19q13.42	605784	TTYH1	Tweety, Drosophila, homolog of, 1	TTYH1	57348	ENSG00000167614			Ttyh1 (MGI:1889007)
chr19	54447620	54462045	19q13.42	19q13.42	616575	LENG8, KIAA1932	Leukocyte receptor cluster gene 8	LENG8	114823	ENSG00000167615			Leng8 (MGI:2142195)
chr19	54465024	54473289	19q13.42	19q13.42	609171	CDC42EP5, CEP5, BORG3	CDC42 effector protein 5	CDC42EP5	148170	ENSG00000167617			Cdc42ep5 (MGI:1929745)
chr19	54502796	54510692	19q13.42	19q13.42	602993	LIAR2, CD306	Leukocyte-associated immunoglobulin-like receptor 2	LAIR2	3904	ENSG00000167618			
chr19	54572996	54587559	19q13.4	19q13.42	604812	LILRA2, LIR7, ILT1	Leukocyte immunoglobulin-like receptor, subfamily A, member 2	LILRA2	11027	ENSG00000239998			
chr19	54593575	54602380	19q13.2	19q13.42	604810	LILRA1, LIR6	Leukocyte immunoglobulin-like receptor, subfamily A, member 1	LILRA1	11024	ENSG00000104974			
chr19	54616929	54637924	19q13.4	19q13.42	604811	LILRB1, LIR1, ILT2, MIR7, CD85	Leukocyte immunoglobulin-like receptor, subfamily B, member 1	LILRB1	10859	ENSG00000104972			
chr19	54662523	54670358	19q13.4	19q13.42	604821	LILRB4, LIR5, ILT3, HM18	Leukocyte immunoglobulin-like receptor, subfamily B, member 4	LILRB4	11006	ENSG00000186818			Lilrb4a,Lilr4b (MGI:102701,MGI:102702)
chr19	54724446	54736535	19q13.4	19q13.42	610095	KIR3KL3, KIRC1, KIR3DL7, KIR44	Killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 3	KIR3DL3	115653	ENSG00000242019			Kir3dl2,Kir3dl1 (MGI:2652397,MGI:3612791)
chr19	54738508	54753051	19q13.4	19q13.42	604938	KIR2DL3, NKAT2	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 3	KIR2DL3	3804	ENSG00000243772			
chr19	54769207	54784325	19q13.4	19q13.42	604936	KIR2DL1, NKAT1	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 1	KIR2DL1	3802	ENSG00000125498			
chr19	54786361	54790417	19q13.4	19q13.42	610604	KIR3DP1, CD158C, KIRX, KIR48, KIR2DS6	Killer cell immunoglobulin-like receptor, three domains, pseudogene	KIR3DP1	548594		functional in some individuals		
chr19	54803611	54814516	19q13.4	19q13.42	604945	KIR2DL4, KIR103AS	Killer cell immunoglobulin-like receptor, two domains, long cytoplasmic tail, 4	KIR2DL4	3805	ENSG00000189013			
chr19	54816437	54830777	19q13.4	19q13.42	604946	KIR3DL1, NKAT3, NKB1, AMB11, KIR3DS1	Killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 1	KIR3DL1	3811	ENSG00000167633		{AIDS, delayed/rapid progression to}, 609423 (3)	
chr19	54832675	54848568	19q13.4	19q13.42	604955	KIR2DS4, NKAT8	Killer cell immunoglobulin-like receptor, two domains, short cytoplasmic tail, 4	KIR2DS4	3809	ENSG00000221957			
chr19	54850319	54867214	19q13.4	19q13.42	604947	KIR3DL2, NKAT4	Killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2	KIR3DL2	3812	ENSG00000240403			
chr19	54874092	54891419	19q13.4	19q13.42	147045	FCAR	Fc fragment of IgA, receptor for	FCAR	2204	ENSG00000186431			
chr19	54906062	54938210	19q13.42	19q13.42	604530	NCR1, LY94, NKP46	Natural cytotoxicity triggering receptor 1 (lymphocyte antigen 94, mouse, homolog of)	NCR1	9437	ENSG00000189430			Ncr1 (MGI:1336212)
chr19	54923508	54965183	19q13.4	19q13.42	609661	NALP7, NOD12, PYPAF3, HYDM	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 7	NLRP7	199713	ENSG00000167634		Hydatidiform mole, recurrent, 1, 231090 (3), Autosomal recessive	
chr19	54965278	55001141	19q13.4	19q13.42	609364	NALP2, PAN1, PYPAF2	NACHT-, leucine-rich repeat-, and PYD-containing 2	NLRP2	55655	ENSG00000022556			Nlrp2 (MGI:3041206)
chr19	55013704	55038263	19q13.4	19q13.42	605546	GP6, GPIV, BDPLT11	Glycoprotein VI, platelet	GP6	51206	ENSG00000088053		Bleeding disorder, platelet-type, 11, 614201 (3), Autosomal recessive	Gp6 (MGI:1889810)
chr19	55075852	55087922	19q13.4	19q13.42	614987	EPS8L1, EPS8R1	EPS8-like protein 1	EPS8L1	54869	ENSG00000131037			Eps8l1 (MGI:1914675)
chr19	55090912	55117599	19q13.3-q13.4	19q13.42	613245	PPP1R12C, MBS85	Protein phosphatase 1, regulatory subunit 12C	PPP1R12C	54776	ENSG00000125503			Ppp1r12c (MGI:1924258)
chr19	55132697	55149353	19q13.4	19q13.42	191041	TNNT1, ANM, NEM5	Troponin-T1, skeletal, slow	TNNT1	7138	ENSG00000105048		Nemaline myopathy 5, Amish type, 605355 (3), Autosomal recessive	Tnnt1 (MGI:1333868)
chr19	55151766	55157731	19q13.4	19q13.42	191044	TNNI3, CMH7, CMD2A, RCM1, CMD1FF	Troponin-I, cardiac	TNNI3	7137	ENSG00000129991	mutation identified in 1 CMD2A family	Cardiomyopathy, dilated, 1FF, 613286 (3); ?Cardiomyopathy, dilated, 2A, 611880 (3), Autosomal recessive; Cardiomyopathy, familial restrictive, 1, 115210 (3), Autosomal dominant; Cardiomyopathy, hypertrophic, 7, 613690 (3), Autosomal dominant	Tnni3 (MGI:98783)
chr19	55158660	55166721	19q13.4	19q13.42	614566	DNAAF3, PF22, DAB1, CILD2	Dynein, axonemal, assembly factor 3	DNAAF3	352909	ENSG00000167646		Ciliary dyskinesia, primary, 2, 606763 (3), Autosomal recessive	Dnaaf3 (MGI:3588207)
chr19	55173094	55180440	19q13.42	19q13.42	600782	SYT5	Synaptotagmin-5	SYT5	6861	ENSG00000129990			Syt5 (MGI:1926368)
chr19	55181246	55209505	19q13.4	19q13.42	602510	PTPRH	Protein tyrosine phosphatase, receptor type, H	PTPRH	5794	ENSG00000080031			Ptprh (MGI:3026877)
chr19	55226633	55229263	19q13.42	19q13.42	617806	TMEM86B	Transmembrane protein 86B	TMEM86B	255043	ENSG00000180089			Tmem86b (MGI:1915505)
chr19	55229778	55258669	19q13.42	19q13.42	610875	SAPS1, PP6R1, KIAA1115	SAPS domain family, member 1	PPP6R1	22870	ENSG00000105063			Ppp6r1 (MGI:2442163)
chr19	55262221	55280422	19q13.42	19q13.42	612939	HSPBP1	Heat-shock 70kD protein-binding protein 1	HSPBP1	23640	ENSG00000133265			Hspbp1 (MGI:1913495)
chr19	55284100	55312561	19q13.4	19q13.42	609235	BRSK1, KIAA1811	BR serine/threonine kinase 1	BRSK1	84446	ENSG00000160469			Brsk1 (MGI:2685946)
chr19	55308868	55334042	19q13.42	19q13.42	617291	TMEM150B, DRAM3, TTN2, TMEM224	Transmembrane protein 150B	TMEM150B	284417	ENSG00000180061			Tmem150b (MGI:2679718)
chr19	55339852	55348120	19q13.42	19q13.42	613198	SUV420H2	Suppressor of variegation 4-20, Drosophila, homolog of, 2	KMT5C	84787	ENSG00000133247			Kmt5c (MGI:2385262)
chr19	55364381	55370462	19q13.3-q13.4	19q13.42	147681	IL11	Interleukin-11	IL11	3589	ENSG00000095752			Il11 (MGI:107613)
chr19	55385931	55403247	19q13.4	19q13.42	603638	RPL28	Ribosomal protein L28	RPL28	6158	ENSG00000108107			Rpl28 (MGI:101839)
chr19	55401281	55408438	19q13.42	19q13.42	610309	UBE2S, EPF5, E2EPF	Ubiquitin-conjugating enzyme E2S	UBE2S	27338	ENSG00000108106			Ube2s (MGI:1925141)
chr19	55428737	55442862	19q13.42	19q13.42	617328	SHISA7	Shisa family, member 7	SHISA7	729956	ENSG00000187902			Shisa7 (MGI:3605641)
chr19	55452977	55461681	19q13.42	19q13.42	612928	ISOC2	Isochorismatase domain-containing 2	ISOC2	79763	ENSG00000063241			Isoc2a (MGI:3609243)
chr19	55476331	55484486	19q13.4	19q13.42	610671	ZNF628, ZEC	Zinc finger protein 628	ZNF628	89887	ENSG00000197483			Zfp628 (MGI:2665174)
chr19	55591370	55599702	19q13.42	19q13.42	609133	FIZ1, FLJ14768	FLT3-interacting zinc finger protein 1	FIZ1	84922	ENSG00000179943			Fiz1 (MGI:1344336)
chr19	55641025	55643469	19q13.42	19q13.42	617888	ZNF580	Zinc finger protein 580	ZNF580	51157	ENSG00000213015			Zfp580 (MGI:1916242)
chr19	55647392	55653160	19q13.42	19q13.42	613478	CCDC106	Coiled-coil domain-containing protein 106	CCDC106	29903	ENSG00000173581			Ccdc106 (MGI:2385900)
chr19	55654049	55674715	19q13.42	19q13.42	191318	U2AF2, U2AF65	U2 small nuclear RNA auxiliary factor 2	U2AF2	11338	ENSG00000063244			U2af2 (MGI:98886)
chr19	55675194	55695766	19q13	19q13.42	607262	EPN1	Epsin 1	EPN1	29924	ENSG00000063245			Epn1 (MGI:1333763)
chr19	55708431	55738401	19q13.4	19q13.42	609663	NALP9, NOD6	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 9	NLRP9	338321	ENSG00000185792			Nlrp9b (MGI:2675377)
chr19	55757297	55763420	19q13.4	19q13.42	612601	RFPL4A, RNF210	Ret finger protein-like 4A	RFPL4A	342931	ENSG00000223638			
chr19	55785396	55836761	19q13.4	19q13.42-q13.43	609664	NALP11, PYPAF7, NOD17	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 11	NLRP11	204801	ENSG00000179873			
chr19	55836577	55881854	19q13.4	19q13.43	609645	NALP4, PAN2, PYPAF4	NACHT domain-, leucine-rich repeat-c and PYD-containing protein 4	NLRP4	147945	ENSG00000160505			Nlrp4c,Nlrp4e (MGI:3056600,MGI:1890518)
chr19	55891691	55932335	19q13.4	19q13.43	609660	NALP13, NOD14	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 13	NLRP13	126204	ENSG00000173572			
chr19	55947831	55988628	19q13.4	19q13.43	609659	NALP8, NOD16, PAN4	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 8	NLRP8	126205	ENSG00000179709			
chr19	55999725	56061809	19q13	19q13.43	609658	NALP5, MATER	NACHT domain-, leucine-rich repeat-, and PYD-containing protein 5	NLRP5	126206	ENSG00000171487			Nlrp5 (MGI:1345193)
chr19	56132508	56160892	19q13.43	19q13.43	607874	ZNF444, EZF2	Zinc finger protein 444	ZNF444	55311	ENSG00000167685			Zfp444 (MGI:1923365)
chr19	56176019	56185774	19q13.4	19q13.43	611178	GALP, ALARIN	Galanin-like peptide (GALP precursor protein)	GALP	85569	ENSG00000197487			Galp (MGI:2663979)
chr19	56382750	56393600	19q13.43	19q13.43	615600	ZNF582	Zinc finger protein 582	ZNF582	147948	ENSG00000018869			
chr19	56438511	56478064	19q13.4	19q13.43	611024	ZNF667, MIPU1	Zinc finger protein 667	ZNF667	63934	ENSG00000198046			Zfp667 (MGI:2442757)
chr19	56536789	56559191	19q13.4	19q13.43	616798	ZFP28	Zinc finger protein 28	ZFP28	140612	ENSG00000196867			Zfp28 (MGI:99175)
chr19	56595258	56624480	19q13.4	19q13.43	194545	ZNF71	Zinc finger protein-71 (Cos26)	ZNF71	58491	ENSG00000197951	previously assigned to 22q11.2		
chr19	56810076	56840725	19q13.4	19q13.43	601483	PEG3	Paternally expressed gene 3	PEG3	5178	ENSG00000198300			Peg3 (MGI:104748)
chr19	57151725	57167487	19q13.43	19q13.43	611168	DUXA	Double homeobox A	DUXA	503835	ENSG00000258873	many pseudogenes		
chr19	57191499	57222845	19q13.4	19q13.43	604668	ZNF264	Zinc finger protein-264	ZNF264	9422	ENSG00000083844			
chr19	57230316	57235549	19q13.43	19q13.43	603495	AURKC, STK13, AIE2, SPGF5	Aurora kinase C	AURKC	6795	ENSG00000105146		Spermatogenic failure 5, 243060 (3), Autosomal recessive	Aurkc (MGI:1321119)
chr19	57279966	57294067	19q13.4	19q13.43	604755	ZNF272, HZF8, ZNF460	Zinc finger protein-272	ZNF460	10794	ENSG00000197714			
chr19	57320496	57330775	19q13.43	19q13.43	616847	ZNF543	Zinc finger protein 543	ZNF543	125919	ENSG00000178229			
chr19	57351252	57359897	19q13.43	19q13.43	613840	ZNF304	Zinc finger protein 304	ZNF304	57343	ENSG00000131845			
chr19	57455173	57456738	19q13.4	19q13.43	605234	VN1R1, V1RL1	Vomeronasal 1 receptor 1	VN1R1	57191	ENSG00000178201			
chr19	57487710	57494679	19q13.43	19q13.43	617410	ZNF419	Zinc finger protein 419	ZNF419	79744	ENSG00000105136			
chr19	57614218	57624716	19q13.4	19q13.43	604076	ZNF134	Zinc finger protein-134	ZNF134	7693	ENSG00000213762			
chr19	57633166	57644045	19q13.4	19q13.43	601856	ZNFC25	Zinc finger protein-C2H2-25	ZNF211	10520	ENSG00000121417			
chr19	57651496	57679151	19q13.43	19q13.43	613419	ZSCAN4, ZNF494	Zinc finger- and SCAN domain-containing protein 4	ZSCAN4	201516	ENSG00000180532			
chr19	57696274	57709210	19q13.4	19q13.43	604085	ZNF154	Zinc finger protein-154	ZNF154	7710	ENSG00000179909			
chr19	57940832	57947708	19q13	19q13.43	606956	ZNF256	Zinc finger protein 256	ZNF256	10172	ENSG00000152454			
chr19	57977052	58003345	19q13.4	19q13.43	613905	ZNF606, ZNF328, KIAA1852	Zinc finger protein 606	ZNF606	80095	ENSG00000166704			Zfp606 (MGI:1914620)
chr19	58059226	58069754	19q13.4	19q13.43	604077	ZNF135	Zinc finger protein-135	ZNF135	7694	ENSG00000176293			
chr19	58182988	58213561	19q13.4	19q13.43	605467	ZNF274	Zinc finger protein-274	ZNF274	10782	ENSG00000171606			Zfp369,Zfp110 (MGI:1890378,MGI:2176229)
chr19	58278951	58295887	19q13.43	19q13.43	194532	ZNF8	Zinc finger protein-8	ZNF8	7554	ENSG00000278129	previously assigned to 20q13		Zfp128 (MGI:2389445)
chr19	58326999	58342345	19q13.43	19q13.43	165260	ZSCAN22, HKR2	Zinc finger- and SCAN domain-containing protein 22	ZSCAN22	342945	ENSG00000182318			Zscan22 (MGI:2443312)
chr19	58346805	58353498	19cen-q13.2	19q13.43	138670	A1BG	Glycoprotein, alpha-1B	A1BG	1	ENSG00000121410	order:  C3-SE-LU-A1BG		A1bg (MGI:2152878)
chr19	58387268	58394803	19q13.4	19q13.43	603630	RPS5	Ribosomal protein S5	RPS5	6193	ENSG00000083845			Rps5 (MGI:1097682)
chr19	58432813	58440221	19q13.4	19q13.43	604074	ZNF132	Zinc finger protein-132	ZNF132	7691	ENSG00000131849			
chr19	58467044	58473577	19q13.43	19q13.43	617477	ZNF324, ZF5128	Zinc finger protein 324	ZNF324	25799	ENSG00000083812			Zfp324 (MGI:2444641)
chr19	58498332	58512064	19q13.43	19q13.43	603314	SLC27A5, FATP5, VLACSR, VLCSH2	Solute carrier family 27 (fatty acid transporter), member 5	SLC27A5	10998	ENSG00000083807			Slc27a5 (MGI:1347100)
chr19	58544468	58550721	19q13.4	19q13.43	601742	TRIM28, KAP1, TIF1B	Tripartite motif-containing protein 28	TRIM28	10155	ENSG00000130726			Trim28 (MGI:109274)
chr19	58551565	58555623	19q	19q13.43	610893	CHMP2A, VPS2A, VPS2, BC2	CHMP family, member 2A	CHMP2A	27243	ENSG00000130724			Chmp2a (MGI:1916203)
chr19	58555711	58558975	19q13.43	19q13.43	603173	UBE2M, UBC12	Ubiquitin-conjugating enzyme E2M	UBE2M	9040	ENSG00000130725			Ube2m (MGI:108278)
chr19	58561916	58574477	19q13.2-q13.4	19q13.43	194550	ZNF42, MZF1	Zinc finger protein-42 (myeloid-specific retinoic acid responsive)	MZF1	7593	ENSG00000099326			Mzf1 (MGI:107457)
chr19	0	58617616	Chr.19		603979	ZNF97	Zinc finger protein-97						
chr20	0	28100000	20p		607116	AD8	Alzheimer disease 8		353128		?related to CST3	Alzheimer disease 8, 607116 (2)	
chr20	0	5100000	20p13		608031	ALS7	Amyotrophic lateral sclerosis 7	ALS7	406238		max lod at D20S103	Amyotrophic lateral sclerosis 7, 608031 (2)	
chr20	0	28100000	20p		605804	ATOD3	Dermatitis, atopic, 3		117187		max lod at D20S115	{Dermatitis, atopic, susceptibility to, 3}, 605804 (2)	
chr20	0	25700000	20pter-p11.2		608559	BMIQ6	Body mass index quantitative trait locus 6	BMIQ6	449017		near D20S482 and D20S851	[Body mass index QTL6], 608559 (2)	
chr20	0	5100000	20p13		611242	RLS5	Restless legs syndrome, susceptibility to, 5		100188839		max lod at D20S849	{Restless legs syndrome 5}, 611242 (2)	
chr20	325570	330227	20p13	20p13	601947	SOX12, SOX22	SRY (sex-determining region Y)-box 12	SOX12	6666	ENSG00000177732			Sox12 (MGI:98360)
chr20	346725	359704	20p13	20p13	610666	NRSN2	Neurensin 2	NRSN2	80023	ENSG00000125841			Nrsn2 (MGI:2684969)
chr20	380628	397558	20p13	20p13	607898	TRIB3, NIPK, SINK, C20orf97, SKIP3	Tribbles, Drosophila, homolog of, 3	TRIB3	57761	ENSG00000101255			Trib3 (MGI:1345675)
chr20	408049	432138	20p13	20p13	610924	RBCK1, HOIL1, PGBM1, PBMEI	RANBP-type and C3HC4-type zinc finger-containing 1	RBCK1	10616	ENSG00000125826		Polyglucosan body myopathy 1 with or without immunodeficiency, 615895 (3), Autosomal recessive	Rbck1 (MGI:1344372)
chr20	435476	462552	20p13	20p13	611663	TBC1D20, C20orf140, WARBM4	TBC1 domain family, member 20	TBC1D20	128637	ENSG00000125875		Warburg micro syndrome 4, 615663 (3), Autosomal recessive	Tbc1d20 (MGI:1914481)
chr20	472497	543837	20p13	20p13	115440	CSNK2A1, CK2A1, OCNDS	Casein kinase-2, alpha-1 polypeptide	CSNK2A1	1457	ENSG00000101266	pseudogene on 11p15	Okur-Chung neurodevelopmental syndrome, 617062 (3), Autosomal dominant	Csnk2a1 (MGI:88543)
chr20	603992	610265	20p13	20p13	601010	TCF15	Transcription factor-15 (basic helix-loop-helix)	TCF15	6939	ENSG00000125878			Tcf15 (MGI:104664)
chr20	646614	653369	20p13	20p13	617583	SRXN1, SRX	Sulfiredoxin 1	SRXN1	140809	ENSG00000271303			Srxn1 (MGI:104971)
chr20	760079	776014	20p13	20p13	613350	SLC52A3, C20orf54, RFT2, BVVLS1	Solute carrier family 52, riboflavin transporter, member 3	SLC52A3	113278	ENSG00000101276	mutation identified in 1 FZLD family	Brown-Vialetto-Van Laere syndrome 1, 211530 (3), Autosomal recessive; ?Fazio-Londe disease, 211500 (3), Autosomal recessive	Slc52a3 (MGI:1916948)
chr20	833696	846278	20p13	20p13	611393	FAM110A, C20orf55	Family with sequence similarity 110, member A	FAM110A	83541	ENSG00000125898			Fam110a (MGI:1921097)
chr20	869898	916367	20p13	20p13	603705	ANGPT4, ANG4	Angiopoietin 4	ANGPT4	51378	ENSG00000101280	no ANGT3 in human		Angpt4 (MGI:1336887)
chr20	958451	1002263	20p13	20p13	610573	RSPO4, CRISTIN4	R-spondin family, member 4	RSPO4	343637	ENSG00000101282		Anonychia congenita, 206800 (3), Autosomal recessive	Rspo4 (MGI:1924467)
chr20	1113228	1172245	20p13	20p13	617858	PSMF1, PI31	Proteasome inhibitor subunit 1	PSMF1	9491	ENSG00000125818			Psmf1 (MGI:1346072)
chr20	1266290	1309326	20p13	20p13	604942	SNPH	Syntaphilin	SNPH	9751	ENSG00000101298			Snph (MGI:2139270)
chr20	1309908	1329234	20p13	20p13	617358	SDCBP2, SITAC, ST2, SITAC18	Syndecan-binding protein 2	SDCBP2	27111	ENSG00000125775			Sdcbp2 (MGI:2385156)
chr20	1368976	1393171	20p13	20p13	186945	FKBP1A, FKBP12	FK506-binding protein-1A, 12kD	FKBP1A	2280	ENSG00000088832			Fkbp1a (MGI:95541)
chr20	1442161	1467792	20p	20p13	606610	P47	p47, rat, homolog of	NSFL1C	55968	ENSG00000088833			Nsfl1c (MGI:3042273)
chr20	1629151	1686515	20p13	20p13	605466	SIRPG, SIRPB2	Signal regulatory protein, gamma	SIRPG	55423	ENSG00000089012			
chr20	1894166	1939894	20p13	20p13	602461	SHPS1	SHP substrate-1	SIRPA	140885	ENSG00000198053			Sirpa (MGI:108563)
chr20	1978755	1994284	20p13	20p13	131340	PDYN, SCA23	Prodynorphin	PDYN	5173	ENSG00000101327		Spinocerebellar ataxia 23, 610245 (3), Autosomal dominant	Pdyn (MGI:97535)
chr20	2098020	2148554	20p13	20p13	609370	STK35, CLIK1	Serine/threonine kinase 35	STK35	140901	ENSG00000125834			Stk35 (MGI:1914583)
chr20	2295966	2341078	20q12	20p13	600238	TGM3, UHS2	Transglutaminase-3 (E polypeptide, protein-glutamine-gamma-glutamyl transferase)	TGM3	7053	ENSG00000125780	mutation identified in 1 UHS2 patient	?Uncombable hair syndrome 2, 617251 (3), Autosomal recessive	Tgm3 (MGI:98732)
chr20	2380907	2432752	20p13-p12.2	20p13	613900	TGM6, TG6, TGY, SCA35	Transglutaminase 6	TGM6	343641	ENSG00000166948		Spinocerebellar ataxia 35, 613908 (3), Autosomal dominant	Tgm6 (MGI:3044321)
chr20	2461634	2470852	20p13	20p13	182282	SNRPB, CCMS	Small nuclear ribonucleoprotein polypeptides B and B1	SNRPB	6628	ENSG00000125835		Cerebrocostomandibular syndrome, 117650 (3), Autosomal dominant	Snrpb (MGI:98342)
chr20	2536606	2641783	20p13	20p13	606707	TMC2	Transmembrane channel-like protein 2	TMC2	117532	ENSG00000149488			Tmc2 (MGI:2151017)
chr20	2652531	2658392	20p13	20p13	614154	NOP56, SCA36	Nop56, S. cerevisiae, homolog of	NOP56	10528	ENSG00000101361		Spinocerebellar ataxia 36, 614153 (3), Autosomal dominant	Nop56 (MGI:1914384)
chr20	2652776	2652841	20p13	20p13	614155	MIR1292, MIRN1292	Micro RNA 1292	MIR1292	100302138				
chr20	2658389	2664222	20p13	20p13	604526	IDH3B, RP46	Isocitrate dehydrogenase 3, beta subunit	IDH3B	3420	ENSG00000101365		Retinitis pigmentosa 46, 612572 (3)	Idh3b (MGI:2158650)
chr20	2692877	2760107	20p13	20p13	609935	EBF4, KIAA1442	Early B-cell factor 4	EBF4	57593	ENSG00000088881			Ebf4 (MGI:2385972)
chr20	2840696	2866731	20p13	20p13	608550	VPS16	Vacuolar protein sorting 18, yeast, homolog of	VPS16	64601	ENSG00000215305			Vps16 (MGI:2136772)
chr20	2864194	3038668	20p13	20p13	176884	PTPRA, PTPA, PTPRL2, LRP	Protein tyrosine phosphatase, receptor type, alpha polypeptide	PTPRA	5786	ENSG00000132670			Ptpra (MGI:97808)
chr20	3039060	3045895	20p13	20p13	602352	GNRH2	Gonadotropin-releasing hormone-2	GNRH2	2797	ENSG00000125787			
chr20	3046028	3048249	20p13	20p13	611988	MRPS26, MRPS13	Mitochondrial ribosomal protein S26	MRPS26	64949	ENSG00000125901			Mrps26 (MGI:1333830)
chr20	3068870	3072516	20p13	20p13	167050	OXT	Oxytocin-neurophysin I	OXT	5020	ENSG00000101405	12kb from ARVP		Oxt (MGI:97453)
chr20	3082555	3093520	20p13	20p13	192340	AVP, AVRP, VP	Arginine vasopressin (neurophysin II, antidiuretic hormone)	AVP	551	ENSG00000101200	distal 20p	Diabetes insipidus, neurohypophyseal, 125700 (3), Autosomal dominant	Avp (MGI:88121)
chr20	3146518	3159885	20p13	20p13	614272	FASTKD5	Fast kinase domain-containing protein 5	FASTKD5	60493	ENSG00000215251			Fastkd5 (MGI:2139469)
chr20	3162616	3173596	20p13	20p13	610484	PROSAPIP1, KIAA0552	Proline-rich synapse-associated protein-interacting protein 1	LZTS3	9762	ENSG00000088899			Lzts3 (MGI:2656976)
chr20	3190349	3204696	20p13	20p13	616177	DDRGK1, UFBP1, C20orf116, SEMDSH	DDRGK domain-containing protein 1	DDRGK1	65992	ENSG00000198171		Spondyloepimetaphyseal dysplasia, Shohat type, 602557 (3), Autosomal recessive	Ddrgk1 (MGI:1924256)
chr20	3208867	3227448	20p	20p13	147520	ITPA, EIEE35	Inosine triphosphatase-A	ITPA	3704	ENSG00000125877		Epileptic encephalopathy, early infantile, 35, 616647 (3), Autosomal recessive; [Inosine triphosphatase deficiency], 613850 (3)	Itpa (MGI:96622)
chr20	3227416	3241483	20p13-p12	20p13	610206	SLC4A11, BTR1, NABC1, CHED, CDPD, FECD4	Solute carrier family 4 (sodium borate cotransporter), member 11	SLC4A11	83959	ENSG00000088836		Corneal dystrophy, Fuchs endothelial, 4, 613268 (3); Corneal endothelial dystrophy and perceptive deafness, 217400 (3), Autosomal recessive; Corneal endothelial dystrophy, autosomal recessive, 217700 (3), Autosomal recessive	Slc4a11 (MGI:2138987)
chr20	3249301	3407661	20p13	20p13	614146	C20orf194	Chromosome 20 open reading frame 194	C20orf194	25943	ENSG00000088854			4930402H24Rik (MGI:1923029)
chr20	3471017	3651121	20p13	20p13	603130	ATRN, MGCA	Attractin (mahogany, mouse, homolog of)	ATRN	8455	ENSG00000088812			Atrn (MGI:1341628)
chr20	3667964	3682689	20p13	20p13	607114	ADAM33	A disintegrin and metalloproteinase domain 33	ADAM33	80332	ENSG00000149451			Adam33 (MGI:1341813)
chr20	3686969	3712557	20p13	20p13	600751	SIGLEC1, SN, CD169	Sialic acid-binding immunoglobulin-like lectin 1 (sialoadhesin)	SIGLEC1	6614	ENSG00000088827			Siglec1 (MGI:99668)
chr20	3732669	3753110	20p13	20p13	610702	HSPA12B	Heat-shock 70kD protein 12B	HSPA12B	116835	ENSG00000132622			Hspa12b (MGI:1919880)
chr20	3777503	3781465	20p13	20p13	610674	C20orf28, CLAMP, SPEF1	Sperm flagellar protein 1	SPEF1	25876	ENSG00000101222			Spef1 (MGI:3513546)
chr20	3783850	3786689	20p13	20p13	117140	CENPB	Centromeric protein B	CENPB	1059	ENSG00000125817			Cenpb (MGI:88376)
chr20	3786771	3806120	20p13	20p13	116949	CDC25B	Cell division cycle 25B	CDC25B	994	ENSG00000101224			Cdc25b (MGI:99701)
chr20	3820523	3825306	20p13	20p13	614824	AP5S1, C20orf29	Adaptor-related protein complex 5, sigma-1 subunit	AP5S1	55317	ENSG00000125843			Ap5s1 (MGI:1916846)
chr20	3846798	3876122	20p13	20p13	609676	MAVS, VISA, IPS1, CARDIF, KIAA1271	Mitochondrial antiviral signaling protein	MAVS	57506	ENSG00000088888			Mavs (MGI:2444773)
chr20	3888822	3933086	20p13-p12.3	20p13	606157	PANK2, NBIA1, PKAN, HARP	Pantothenate kinase 2	PANK2	80025	ENSG00000125779		HARP syndrome, 607236 (3), Autosomal recessive; Neurodegeneration with brain iron accumulation 1, 234200 (3), Autosomal recessive	Pank2 (MGI:1921700)
chr20	3917493	3917570	20p13	20p13	613188	MIR103-2, MIRN103-2	Micro RNA 103-2	MIR103A2	406896				
chr20	3927308	4015590	20p13-p12.1	20p13	612489	RNF24, G1L	Ring finger protein 24	RNF24	11237	ENSG00000101236			Rnf24 (MGI:1261771)
chr20	4148778	4187746	20p13	20p13	615854	SMOX, SMO, PAO1, C20orf16, PAOH	Spermine oxidase	SMOX	54498	ENSG00000088826			Smox (MGI:2445356)
chr20	4220630	4249011	20p13	20p13	104219	ADRA1D, ADRA1A	Adrenergic, alpha-1D-, receptor	ADRA1D	146	ENSG00000171873	incorrectly assigned to 5q		Adra1d (MGI:106673)
chr20	4686093	4701589	20pter-p12	20p13	176640	PRNP, PRIP, KURU, CJD	Prion protein (p27-30)	PRNP	5621	ENSG00000171867	pter-PRNP-SCG1-BMP2A-PAX1-cen	Cerebral amyloid angiopathy, PRNP-related, 137440 (3), Autosomal dominant; Creutzfeldt-Jakob disease, 123400 (3), Autosomal dominant; Gerstmann-Straussler disease, 137440 (3), Autosomal dominant; Huntington disease-like 1, 603218 (3), Autosomal dominant; Insomnia, fatal familial, 600072 (3), Autosomal dominant; {Kuru, susceptibility to}, 245300 (3); Prion disease with protracted course, 606688 (3), Autosomal dominant	Prnp (MGI:97769)
chr20	4721853	4728461	20pter-p12	20p13	604263	PRND, DPL	Prion gene complex, downstream (doppel)	PRND	23627	ENSG00000171864			Prn,Prnd (MGI:1346999,MGI:97767)
chr20	4852355	5010292	20p13-p12	20p13	603791	SLC23A2, SVCT2	Solute carrier family 23 (nucleobase transporters), member 2 (sodium-dependent vitamin C transporter 2)	SLC23A2	9962	ENSG00000089057			Slc23a2 (MGI:1859682)
chr20	5064876	5113090	20p13	20p13-p12	617019	TMEM230, C20orf30	Transmembrane protein 230	TMEM230	29058	ENSG00000089063			Tmem230 (MGI:1917862)
chr20	5100000	9200000	20p12.3		611738	BMND7	Bone mineral density QTL 7		100188853		most significant association with haplotype C	{Osteoporosis}, 166710 (2), Autosomal dominant	
chr20	5100000	9200000	20p12.3		612592	CRCS11	Colorectal cancer, susceptibility to, 11		100271692		associated with rs961253	{Colorectal cancer, susceptibility to, 11}, 612592 (2)	
chr20	5100000	17900000	20p12		608696	GLC1K, JOAG3	Glaucoma 1K, primary open angle, juvenile-onset	GLC1K	574077		between D20S189 and D20S104	Glaucoma 1K, primary open angle, juvenile-onset, 608696 (2)	
chr20	5100000	17900000	20p12		610065	SLEB7	Systemic lupus erythematosus, susceptibility to, 7		100188803			{Systemic lupus erythematosus, susceptibility to, 7}, 610065 (2)	
chr20	5114952	5126621	20p12	20p12.3	176740	PCNA, ATLD2	Proliferating cell nuclear antigen	PCNA	5111	ENSG00000132646	pseudogenes on X and 6; mutation identified in one ATLD2 family	?Ataxia-telangiectasia-like disorder 2, 615919 (3), Autosomal recessive	Pcna (MGI:97503)
chr20	5126760	5197886	20p13	20p12.3	603549	CDS2	CDP-diacylglycerol synthase 2	CDS2	8760	ENSG00000101290			Cds2 (MGI:1332236)
chr20	5298851	5316731	20p13	20p12.3	607123	PROKR2, PKR2, GPR73L1, HH3	Prokineticin receptor 2	PROKR2	128674	ENSG00000101292		Hypogonadotropic hypogonadism 3 with or without anosmia, 244200 (3), Autosomal dominant	Prokr2 (MGI:2181363)
chr20	5544433	5611045	20p12.3	20p12.3	614124	GPCPD1, GDE5, KIAA1434	Glycerophosphocholine phosphodiesterase GDE1, S. cerevisiae, homolog of	GPCPD1	56261	ENSG00000125772			Gpcpd1 (MGI:104898)
chr20	5911327	5925360	20pter-p12	20p12.3	118920	CHGB, SCG1	Chromogranin B (secretogranin B)	CHGB	1114	ENSG00000089199			Chgb (MGI:88395)
chr20	5950651	6000940	20p13-p12.3	20p12.3	608187	MCM8, POF10	Minichromosome maintenance complement component 8	MCM8	84515	ENSG00000125885	mutation identified in 1 POF10 family	?Premature ovarian failure 10, 612885 (3), Autosomal recessive	Mcm8 (MGI:1913884)
chr20	6005937	6040052	20p13-p12.3	20p12.3	608188	CRLS1, GCD10, C20orf155	Cardiolipin synthase 1	CRLS1	54675	ENSG00000088766			Crls1 (MGI:1913836)
chr20	6074844	6123608	20p13	20p12.3	607900	KIND1, URP1, C20orf42	Kindlin 1	FERMT1	55612	ENSG00000101311		Kindler syndrome, 173650 (3), Autosomal recessive	Fermt1 (MGI:2443583)
chr20	6768097	6780279	20p12	20p12.3	112261	BMP2, BMP2A, BDA2, SSFSC	Bone morphogenetic protein-2	BMP2	650	ENSG00000125845		Brachydactyly, type A2, 112600 (3), Autosomal dominant; {HFE hemochromatosis, modifier of}, 235200 (3), Autosomal recessive; Short stature, facial dysmorphism, and skeletal anomalies with or without cardiac anomalies, 617877 (3), Autosomal dominant	Bmp2 (MGI:88177)
chr20	7882983	7940445	20p12	20p12.3	605023	HAO1, GOX1	Hydroxyacid oxidase 1	HAO1	54363	ENSG00000101323			Hao1 (MGI:96011)
chr20	7977352	8019828	20p12.3	20p12.3	616766	TMX4	Thioredoxin-related transmembrane protein 4	TMX4	56255	ENSG00000125827			Tmx4 (MGI:106558)
chr20	8132264	8884899	20p12	20p12.3	607120	PLCB1, KIAA0581, PLCB1A, PLCB1B, EIEE12	Phospholipase C, beta-1	PLCB1	23236	ENSG00000182621		Epileptic encephalopathy, early infantile, 12, 613722 (3), Autosomal recessive	Plcb1 (MGI:97613)
chr20	9068709	9480815	20p12	20p12.3-p12.2	600810	PLCB4, ARCND2	Phospholipase C, beta 4	PLCB4	5332	ENSG00000101333		Auriculocondylar syndrome 2, 614669 (3), Autosomal recessive, Autosomal dominant	Plcb4 (MGI:107464)
chr20	9514357	9530523	20p12.2	20p12.2	614641	LAMP5, BADLAMP	Lysosome-associated membrane protein 5	LAMP5	24141	ENSG00000125869			Lamp5 (MGI:1923411)
chr20	10218797	10307419	20p11.2	20p12.2	600322	SNAP25, CMS18	Synaptosomal-associated protein, 25kD	SNAP25	6616	ENSG00000132639	mutation identified in 1 CMS18 patient	?Myasthenic syndrome, congenital, 18, 616330 (3), Autosomal dominant	Snap25 (MGI:98331)
chr20	10404779	10434238	20p12	20p12.2	604896	MKKS, HMCS, KMS, MKS, BBS6	McKusick-Kaufman syndrome gene	MKKS	8195	ENSG00000125863		Bardet-Biedl syndrome 6, 605231 (3), Autosomal recessive; McKusick-Kaufman syndrome, 236700 (3), Autosomal recessive	Mkks (MGI:1891836)
chr20	10435135	10628137	20p12.2	20p12.2	615958	SLX4IP, C20orf94	SLX4-interacting protein	SLX4IP	128710	ENSG00000149346			Slx4ip (MGI:1921493)
chr20	10637683	10674045	20p12	20p12.2	601920	JAG1, AGS1, AHD	Jagged 1	JAG1	182	ENSG00000101384	mutation identified in 1 DFNCDPE family	Alagille syndrome 1, 118450 (3), Autosomal dominant; ?Deafness, congenital heart defects, and posterior embryotoxon (3); Tetralogy of Fallot, 187500 (3), Autosomal dominant	Jag1 (MGI:1095416)
chr20	11890722	11926594	20p12.2	20p12.2	615566	BTBD3, KIAA0952	BTB/POZ domain-containing protein 3	BTBD3	22903	ENSG00000132640			
chr20	13008953	13169102	20p12.3-p12.1	20p12.1	611120	SPTLC3, SPTLC2L	Serine palmitoyltransferase, long-chain base subunit 3	SPTLC3	55304	ENSG00000172296			Sptlc3 (MGI:2444678)
chr20	13104759	13638935	20p12.1	20p12.1	608270	TASP1, C20orf13	Threonine aspartase 1	TASP1	55617	ENSG00000089123			Tasp1 (MGI:1923062)
chr20	13221770	13326733	20p12.1	20p12.1	615793	ISM1, ISM	Isthmin 1, angiogenesis inhibitor	ISM1	140862	ENSG00000101230			Ism1 (MGI:2442963)
chr20	13785025	13821579	20p12.1	20p12.1	612360	NDUFAF5, C20orf7	NADH dehydrogenase (ubiquinone) complex I, assembly factor T	NDUFAF5	79133	ENSG00000101247		Mitochondrial complex 1 deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufaf5 (MGI:1916737)
chr20	13848585	13995332	20p12.1	20p12.1	614289	SEL1L2	Suppressor of Lin12-like 2	SEL1L2	80343	ENSG00000101251			
chr20	13995499	16053196	20p12	20p12.1	611567	MACROD2, C2orf133	Macro domain-containing 2	MACROD2	140733	ENSG00000172264			Macrod2 (MGI:1920149)
chr20	14322984	14337846	20p11	20p12.1	604808	FLRT3, HH21	Fibronectin-like domain-containing leucine-rich transmembrane protein-3	FLRT3	23767	ENSG00000125848		Hypogonadotropic hypogonadism 21 with anosmia, 615271 (3), Autosomal dominant	Flrt3 (MGI:1918686)
chr20	16729963	16741771	20p12.1	20p12.1	603520	SNRPB2	Small nuclear ribonucleoprotein polypeptide B-double prime	SNRPB2	6629	ENSG00000125870			Snrpb2 (MGI:104805)
chr20	16748352	16752163	20p11	20p12.1	606067	OTOR	Otoraplin	OTOR	56914	ENSG00000125879			Otor (MGI:1888678)
chr20	17226106	17484577	20p11.2	20p12.1	162151	PCSK2, NEC2, PC2	Proprotein convertase subtilisin/kexin type 2	PCSK2	5126	ENSG00000125851			Pcsk2 (MGI:97512)
chr20	17493904	17569219	20p12.1-p11.23	20p12.1	603307	BFSP1, CP115, CTRCT33	Beaded filament structural protein-1 (filensin)	BFSP1	631	ENSG00000125864		Cataract 33, multiple types, 611391 (3), Autosomal recessive, Autosomal dominant	Bfsp1 (MGI:101770)
chr20	17569172	17608241	20p12.1	20p12.1	609114	DSTN, ADF	Destrin	DSTN	11034	ENSG00000125868			Dstn (MGI:1929270)
chr20	17613677	17682282	20p12-p11.2	20p12.1	601418	RRBP1, ES130	Ribosome binding protein-1	RRBP1	6238	ENSG00000125844			
chr20	17900000	47800000	20p11.2-q13.12		612406	DYT17	Dystonia-17, primary torsion	DYT17	100216344		between D20S472 and D20S911	Dystonia-17, primary torsion, 612406 (2), Autosomal recessive	
chr20	17941595	17968990	20p11	20p11.23	605937	SNX5	Sorting nexin 5	SNX5	27131	ENSG00000089006			Snx5 (MGI:1916428)
chr20	17968593	17991121	20p11.23	20p11.23	615076	MGME1, C20orf72, MTDPS11	Mitochondrial genome maintenance exonuclease 1	MGME1	92667	ENSG00000125871		Mitochondrial DNA depletion syndrome 11, 615084 (3), Autosomal recessive	Mgme1 (MGI:1921778)
chr20	18024151	18059187	20p11.23	20p11.23	616441	OVOL2, ZNF339, PPCD1	ovo-like 2	OVOL2	58495	ENSG00000125850		Corneal dystrophy, posterior polymorphous, 1, 122000 (3), Autosomal dominant	Ovol2 (MGI:1338039)
chr20	18137854	18143168	20p11.23	20p11.23	614771	PET117	PET117, S. cerevisiae, homolog of	PET117	100303755	ENSG00000232838			Pet117 (MGI:5295678)
chr20	18142223	18188386	20p11.23	20p11.23	617501	KAT14, CRP2BP, CSRP2BP, ATAC2	Lysine acetyltransferase 14	KAT14	57325	ENSG00000149474			Kat14 (MGI:1917264)
chr20	18288227	18316995	20p11.2	20p11.23	604075	ZNF133	Zinc finger protein-133	ZNF133	7692	ENSG00000125846			
chr20	18467388	18484647	20p11.23	20p11.23	617455	POLR3F, RPC39, RPC6	Polymerase III, RNA, subunit F	POLR3F	10621	ENSG00000132664			Polr3f (MGI:1924086)
chr20	18486539	18497249	20p11.2	20p11.23	602908	RBBP9, BOG	Retinoma-binding protein 9	RBBP9	10741	ENSG00000089050			Rbbp9 (MGI:1347074)
chr20	18507481	18561414	20p11.2	20p11.23	610512	SEC23B, CDAN2, HEMPAS, CWS7	Sec23, S. cerevisiae, homolog of, B	SEC23B	10483	ENSG00000101310		Cowden syndrome 7, 616858 (3), Autosomal dominant; Dyserythropoietic anemia, congenital, type II, 224100 (3), Autosomal recessive	Sec23b (MGI:1350925)
chr20	18587892	18763916	20p11	20p11.23	610996	DTD1, C20orf88	D-tyrosyl-tRNA deacylase 1, S. cerevisiae, homolog of	DTD1	92675	ENSG00000125821			Dtd1 (MGI:1913294)
chr20	19212645	19722896	20p13	20p11.23	609839	SLC24A3, NCKX3	Solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	SLC24A3	57419	ENSG00000185052			Slc24a3 (MGI:2137513)
chr20	19757609	20002458	20p11.22	20p11.23	610222	RIN2, MACS	RAS and RAB interactor 2	RIN2	54453	ENSG00000132669		Macrocephaly, alopecia, cutis laxa, and scoliosis, 613075 (3), Autosomal recessive	Rin2 (MGI:1921280)
chr20	20017289	20033628	20p11.2	20p11.23	610833	NAT5, NAT3	N-acetyltransferase 5	NAA20	51126	ENSG00000173418			Naa20 (MGI:1915127)
chr20	20034360	20056045	20p11.2	20p11.23	610952	CRNKL1, CRN	Crooked neck pre-mRNA splicing factor-like 1	CRNKL1	51340	ENSG00000101343			Crnkl1 (MGI:1914127)
chr20	20368120	20370948	20p11.2	20p11.23	600010	INSM1, IA1	Insulinoma-associated 1	INSM1	3642	ENSG00000173404			Insm1 (MGI:1859980)
chr20	21087603	21106357	20p11.23	20p11.23	614992	LINC00237	Long intergenic noncoding RNA 237	LINC00237	105372556				
chr20	21125974	21246621	20p11.23	20p11.23	615757	KIZ, KIZUNA, C20orf19, RP69	Kizuna centrosomal protein	KIZ	55857	ENSG00000088970		Retinitis pigmentosa 69, 615780 (3), Autosomal recessive	Kiz (MGI:2684960)
chr20	21300000	22300000	20p11.22		612421	AGA3	Alopecia, androgenetic, 3		100217387		associated with rs1160312	Alopecia, androgenetic, 3, 612421 (2)	
chr20	21303283	21389824	20p11.2-p11.1	20p11.22	608851	XRN2	Exoribonuclease 2	XRN2	22803	ENSG00000088930			Xrn2 (MGI:894687)
chr20	21395366	21397408	20p11	20p11.22	607808	NKX2-4, NKX2D	NK2 homeobox 4	NKX2-4	644524	ENSG00000125816			Nkx2-4 (MGI:97349)
chr20	21511009	21514025	20p11	20p11.22	604612	NKX2-2, NKX2B	NK2, homeobox 2	NKX2-2	4821	ENSG00000125820			Nkx2-2 (MGI:97347)
chr20	21705658	21718485	20p11.2	20p11.22	167411	PAX1, OFC2	Paired box homeotic gene-1	PAX1	5075	ENSG00000125813	mutation identified in 1 family	?Otofaciocervical syndrome 2, 615560 (3), Autosomal recessive	Pax1 (MGI:97485)
chr20	22581003	22585462	20p11	20p11.21	600288	FOXA2, HNF3B	Forkhead box A2 (hepatic nuclear factor-3, beta)	FOXA2	3170	ENSG00000125798			Foxa2 (MGI:1347476)
chr20	23035419	23036676	20p11.2	20p11.21	182454	SSTR4	Somatostatin receptor-4	SSTR4	6754	ENSG00000132671			Sstr4 (MGI:105372)
chr20	23045632	23049663	20p11.2	20p11.21	188040	THBD, THRM, AHUS6, THPH12	Thrombomodulin	THBD	7056	ENSG00000178726		{Hemolytic uremic syndrome, atypical, susceptibility to, 6}, 612926 (3), Autosomal dominant; Thrombophilia due to thrombomodulin defect, 614486 (3)	Thbd (MGI:98736)
chr20	23076553	23086829	20p11.21	20p11.21	120577	C1QR1, CD93, C1QR	Complement component 1, q subcomponent, receptor 1	CD93	22918	ENSG00000125810			Cd93 (MGI:106664)
chr20	23350735	23354771	20p12-p11.2	20p11.21	605811	NXT1, MTR2	NTF2-related export protein 1	NXT1	29107	ENSG00000132661			Nxt1 (MGI:1929619)
chr20	23361584	23375398	20p11.21	20p11.21	613842	GZF1, ZNF336, JLSM	GDNF-inducible zinc finger protein 1	GZF1	64412	ENSG00000125812		Joint laxity, short stature, and myopia, 617662 (3), Autosomal recessive	Gzf1 (MGI:1921783)
chr20	23374518	23421518	20p11.21	20p11.21	611270	NAPB, SNAPB	N-ethylmaleimide-sensitive factor attachment protein, beta	NAPB	63908	ENSG00000125814			Napb (MGI:104562)
chr20	23450403	23452844	20p11.21	20p11.21	609731	CST11, CST8L	Cystatin 11	CST11	140880	ENSG00000125831			Cst11 (MGI:1925490)
chr20	23564731	23568748	20p11.2	20p11.21	616536	CST9L	Cystatin 9-like	CST9L	128821	ENSG00000101435			Cst9 (MGI:1340053)
chr20	23602409	23605972	20p11.2	20p11.21	616543	CST9, CLM	Cystatin 9	CST9	128822	ENSG00000173335			
chr20	23627896	23638047	20p11.2	20p11.21	604312	CST3, ARMD11	Cystatin C	CST3	1471	ENSG00000101439	proximal to 20p11.2	Cerebral amyloid angiopathy, 105150 (3), Autosomal dominant; {Macular degeneration, age-related, 11}, 611953 (3)	Cst3 (MGI:102519)
chr20	23685639	23689024	20p11.2	20p11.21	123857	CST4	Cystatin S	CST4	1472	ENSG00000101441			
chr20	23747552	23750936	20p11.2	20p11.21	123855	CST1	Cystatin SN	CST1	1469	ENSG00000170373			
chr20	23823766	23826674	20p11.2	20p11.21	123856	CST2	Cystatin SA	CST2	1470	ENSG00000170369			
chr20	23875934	23879742	20p11.21	20p11.21	123858	CST5	Cystatin D	CST5	1473	ENSG00000170367			Cst10 (MGI:1930004)
chr20	23985052	23989133	20p11.1	20p11.21	612338	GGTLC1, GGTL6, GGTLA4	Gamma-glutamyltransferase, light chain 1	GGTLC1	92086	ENSG00000149435			
chr20	24469198	24666616	20p11.21	20p11.21	614311	SYNDIG1, TMEM90B	Synapse differentiation-induced gene 1	SYNDIG1	79953	ENSG00000101463			Syndig1 (MGI:3702158)
chr20	24949229	24959927	20p11.2	20p11.21	603253	CST7, CMAP	Cystatin 7	CST7	8530	ENSG00000077984			Cst7 (MGI:1298217)
chr20	24962924	24992929	20p11.2	20p11.21	615884	APMAP, C20orf3, BSCV	Adipocyte plasma membrane-associated protein	APMAP	57136	ENSG00000101474			Apmap (MGI:1919131)
chr20	25006229	25058181	20p11.23-p11.21	20p11.21	614355	ACSS1, ACECS1	Acyl-CoA synthetase short-chain family, member 1	ACSS1	84532	ENSG00000154930			Acss1 (MGI:1915988)
chr20	25069939	25082378	20p11.2	20p11.21	605020	VSX1, RINX, KTCN1, CAASDS	Visual system homeo box gene 1, zebrafish, homolog of	VSX1	30813	ENSG00000100987	mutation identified in 1 CAASDS family	?Craniofacial anomalies and anterior segment dysgenesis syndrome, 614195 (3); Keratoconus 1, 148300 (3), Autosomal dominant	Vsx1 (MGI:1890816)
chr20	25195669	25228074	20q11.2	20p11.21	603160	ENTPD6, CD39L2	Ectonucleoside triphosphate diphosphohydrolase 6	ENTPD6	955	ENSG00000197586			Entpd6 (MGI:1202295)
chr20	25248038	25298011	20p11.2-p11.1	20p11.21	138550	PYGB	Phosphorylase, glycogen, brain	PYGB	5834	ENSG00000100994			Pygb (MGI:97828)
chr20	25294742	25390981	20p11.21	20p11.21	613599	ABHD12, PHARC	Abhydrolase domain-containing protein 12	ABHD12	26090	ENSG00000100997		Polyneuropathy, hearing loss, ataxia, retinitis pigmentosa, and cataract, 612674 (3), Autosomal recessive	Abhd12 (MGI:1923442)
chr20	25407469	25448567	20p11.21	20p11.21	610608	GINS1, PSF1, KIAA0186, IMD55	GINS complex subunit 1	GINS1	9837	ENSG00000101003		Immunodeficiency 55, 617827 (3), Autosomal recessive	Gins1 (MGI:1916520)
chr20	25612934	25624011	20p11	20p11.21	610763	NANP, HDHD4	N-acetylneuraminic acid phosphatase	NANP	140838	ENSG00000170191			Nanp (MGI:1914561)
chr20	28100000	64444167	20q11-q13		610261	HYT5	Hypertension, essential, susceptibility to, 5		100188807			{Hypertension, essential, susceptibility to, 5}, 145500 (2), Multifactorial	
chr20	28100000	64444167	20q11-q13		617352	MBCS	Mulchandani-Bhoj-Conlin syndrome				maternal uniparental disomy of imprinted region	Mulchandani-Bhoj-Conlin syndrome, 617352 (3)	
chr20	28100000	64444167	20q11-q13		608029	SCAR6, CLA3	Spinocerebellar ataxia, autosomal recessive 6	CLA3	1167		between D20S471 and D20S119	Spinocerebellar ataxia, autosomal recessive 6, 608029 (2), Autosomal recessive	
chr20	30400000	39000000	20q11.2		612263	CMM7	Melanoma, cutaneous malignant, susceptibility to, 7		100190932		between rs910873 and rs1885120	{Melanoma, cutaneous malignant, 7}, 612263 (2)	
chr20	30400000	43100000	20q11.2-q12		601308	MLRL, MTS	Myeloid leukemia-related locus (myeloid tumor suppressor)		8201				
chr20	31368617	31373922	20q11	20q11.21	607650	DEFB118, C20orf63, ESC42	Defensin, beta, 118	DEFB118	117285	ENSG00000131068			
chr20	31377162	31390648	20q11.1	20q11.21	615997	DEFB119, DEFB120, DEFB20	Defensin, beta, 119	DEFB119	245932	ENSG00000180483			Defb19 (MGI:2385955)
chr20	31404844	31418521	20q11.1	20q11.21	616075	DEFB121, DEFB21	Defensin, beta, 121	DEFB121	245934	ENSG00000204548			
chr20	31421438	31429179	20q11.1	20q11.21	616077	DEFB122, DEFB22	Defensin, beta, 122, pseudogene	DEFB122	245935				
chr20	31440518	31450256	20q11.1	20q11.21	616076	DEFB123, DEFB23	Defensin, beta, 123	DEFB123	245936	ENSG00000180424			
chr20	31475272	31484904	20q11.21	20q11.21	610388	REM1, GES	RRAD- and GEM-like GTPase 1	REM1	28954	ENSG00000088320			Rem1 (MGI:1097696)
chr20	31514409	31569566	20q11.21	20q11.21	607106	HM13, SPP	Minor histocompatibility 13 (signal peptide peptidase)	HM13	81502	ENSG00000101294			H13 (MGI:95886)
chr20	31605282	31606514	20q11	20q11.21	600349	ID1	Inhibitor of DNA binding 1, dominant negative	ID1	3397	ENSG00000125968			Id1 (MGI:96396)
chr20	31637855	31645008	20q11.21	20q11.21	607976	COX4I2	Cytochrome c oxidase, subunit IV, isoform 2	COX4I2	84701	ENSG00000131055		Exocrine pancreatic insufficiency, dyserythropoietic anemia, and calvarial hyperostosis, 612714 (3), Autosomal recessive	Cox4i2 (MGI:2135755)
chr20	31664451	31723998	20q11.21	20q11.21	600039	BCL2L1, BCLX, BCLXL, BCLXS	BCL2-like 1	BCL2L1	598	ENSG00000171552			Bcl2l1 (MGI:88139)
chr20	31739100	31801801	20q11.2	20q11.21	605917	C20orf1, P100	Proliferation-associated nuclear protein, 100kD	TPX2	22974	ENSG00000088325			Tpx2 (MGI:1919369)
chr20	31819374	31834696	20q13.3	20q11.21	606566	MYLK2, MLCK	Myosin light chain kinase 2	MYLK2	85366	ENSG00000101306		Cardiomyopathy, hypertrophic, 1, digenic, 192600 (3), Autosomal dominant	Mylk2 (MGI:2139434)
chr20	31844299	31845616	20q11.1-q11.2	20q11.21	602939	FOXS1, FKHL18, FREAC10	Forkhead box S1	FOXS1	2307	ENSG00000179772			Foxs1 (MGI:95546)
chr20	31845577	31870743	20q11.21	20q11.21	616776	DUSP15, VHY	Dual-specificity phosphatase 15	DUSP15	128853	ENSG00000149599			Dusp15 (MGI:1934928)
chr20	31944954	31952079	20q11	20q11.21	610789	PDRG1, PDRG, C20orf126	P53 and DNA damage-regulated 1	PDRG1	81572	ENSG00000088356			Pdrg1 (MGI:1915809)
chr20	32052187	32101855	20q11-q12	20q11.21	142370	HCK	Hemopoietic cell kinase	HCK	3055	ENSG00000101336			Hck (MGI:96052)
chr20	32109505	32167257	20q11.21	20q11.21	617727	TM9SF4, KIAA0255	Transmembrane 9 superfamily, member 4	TM9SF4	9777	ENSG00000101337			Tm9sf4 (MGI:2139220)
chr20	32192503	32207742	20q11.21	20q11.21	604866	PLAGL2	Pleomorphic adenoma gene-like 2	PLAGL2	5326	ENSG00000126003			Plagl2 (MGI:1933165)
chr20	32207888	32238663	20q11.21	20q11.21	607491	POFUT1, OFUCT1, KIAA0180, DDD2	Protein O-fucosyltransferase 1	POFUT1	23509	ENSG00000101346		Dowling-Degos disease 2, 615327 (3), Autosomal dominant	Pofut1 (MGI:2153207)
chr20	32277650	32335010	20q11.21	20q11.21	603754	KIF3B, KIAA0359	Kinesin family member 3B	KIF3B	9371	ENSG00000101350			Kif3b (MGI:107688)
chr20	32358061	32439318	20q11.21	20q11.21	612990	ASXL1, KIAA0978, BOPS, MDS	Additional sex combs-like 1	ASXL1	171023	ENSG00000171456		Bohring-Opitz syndrome, 605039 (3), Autosomal dominant; Myelodysplastic syndrome, somatic, 614286 (3)	Asxl1 (MGI:2684063)
chr20	32702690	32744007	20q11.21	20q11.21	616703	COMMD7	COMM domain-containing protein 7	COMMD7	149951	ENSG00000149600			Commd7 (MGI:1914197)
chr20	32762384	32809355	20q11.2	20q11.21	602900	DNMT3B, ICF1	DNA methyltransferase 3B	DNMT3B	1789	ENSG00000088305		Immunodeficiency-centromeric instability-facial anomalies syndrome 1, 242860 (3), Autosomal recessive	Dnmt3b (MGI:1261819)
chr20	32819779	32850404	20q11.1-q11.23	20q11.21	603108	MAPRE1, EB1	Microtubule-associated protein, RP/EB family, member 1	MAPRE1	22919	ENSG00000101367			Mapre1 (MGI:891995)
chr20	32983772	33004448	20q11.2	20q11.21	613942	SUN5, TSARG4, SPAG4L, SPGF16	Sad1 and Unc84 domain-containing protein 5	SUN5	140732	ENSG00000167098		Spermatogenic failure 16, 617187 (3), Autosomal recessive	Sun5 (MGI:1923657)
chr20	33007577	33023708	20q11	20q11.21	614108	BPIFB2, BPIL1	BPI fold-containing protein, family B, member 2	BPIFB2	80341	ENSG00000078898			Bpifb2 (MGI:1913807)
chr20	33031647	33044107	20q11	20q11.21	614110	BPIFB6, BPIL3	BPI fold-containing protein, family B, member 6	BPIFB6	128859	ENSG00000167104			Bpifb6 (MGI:2684965)
chr20	33055330	33073636	20q11.21	20q11.21	615717	BPIFBP3, RYA3	BPI fold-containing protein, family B, member 3	BPIFB3	359710	ENSG00000186190			Bpifb3 (MGI:2675077)
chr20	33081511	33111750	20q11.21	20q11.21	615718	BPIFB4, RY2G5	BPI fold-containing protein, family B, member 4	BPIFB4	149954	ENSG00000186191			Bpifb4 (MGI:2685852)
chr20	33193604	33210461	20q11.21	20q11.21	607627	BASE	Breast cancer- and salivary gland-expressed gene	BPIFA4P	317716				
chr20	33235995	33243308	20q11	20q11.21	607412	BPIFA1, PLUNC, SPLUNC1	BPI fold-containing protein, family A, member 1	BPIFA1	51297	ENSG00000198183			Bpifa1 (MGI:1338036)
chr20	33358838	33403029	20q11.2	20q11.21	608200	CDK5RAP1	CDK5 regulatory subunit-associated protein 1	CDK5RAP1	51654	ENSG00000101391			Cdk5rap1 (MGI:1914221)
chr20	33407956	33443891	20q11.2	20q11.21	601017	SNTA1, SNT1, TACIP1, LQT12	Syntrophin, alpha-1	SNTA1	6640	ENSG00000101400		Long QT syndrome 12, 612955 (3), Autosomal dominant	Snta1 (MGI:101772)
chr20	33490069	33650030	20q11.2	20q11.21-q11.22	603672	CBFA2T2, MTGR1, EHT	Core-binding factor, runt domain, alpha subunit 2, translocated to, 2 (ETO homolog on chromosome 20)	CBFA2T2	9139	ENSG00000078699			Cbfa2t2 (MGI:1333833)
chr20	33500000	35800000	20q11.22		612228	STQTL14	Stature quantitative trait locus 14		100270797		associated with rs6060373	{Stature QTL 14}, 612228 (2)	
chr20	33657086	33674457	20q11.22	20q11.22	612478	NECAB3, EFCBP3, NIP1, APBA2BP, XB51, STIP3	N-terminal EF-hand calcium-binding protein 3	NECAB3	63941	ENSG00000125967			Necab3 (MGI:1861721)
chr20	33675485	33686403	20q11.2	20q11.22	189971	E2F1	E2F transcription factor-1	E2F1	1869	ENSG00000101412			E2f1 (MGI:101941)
chr20	33702743	33720329	20q11.22	20q11.22	616397	PXMP4, PMP24	Peroxisomal membrane protein 4	PXMP4	11264	ENSG00000101417			Pxmp4 (MGI:1891701)
chr20	33811303	33854366	20q11.21	20q11.22	610897	CHMP4B, SNF7, CTPP3, CTRCT31	CHMP family, member 4B	CHMP4B	128866	ENSG00000101421		Cataract 31, multiple types, 605387 (3), Autosomal dominant	Chmp4b (MGI:1922858)
chr20	34186492	34269343	20q11.2	20q11.22	600201	ASIP, AGTIL, SHEP9	Agouti, mouse, signaling protein	ASIP	434	ENSG00000101440		[Skin/hair/eye pigmentation 9, brown/nonbrown eyes], 611742 (3); [Skin/hair/eye pigmentation 9, dark/light hair], 611742 (3)	a (MGI:87853)
chr20	34235011	34311975	20cen-q13.1	20q11.22	180960	AHCY, SAHH	S-adenosylhomocysteine hydrolase	AHCY	191	ENSG00000101444	~13cM from ADA	Hypermethioninemia with deficiency of S-adenosylhomocysteine hydrolase, 613752 (3), Autosomal recessive	Ahcy (MGI:87968)
chr20	34363234	34511772	20q11.22-q11.23	20q11.22	606409	ITCH, AIP4, NAPP1, ADMFD	Itchy, mouse, homolog of	ITCH	83737	ENSG00000078747		Autoimmune disease, multisystem, with facial dysmorphism, 613385 (3), Autosomal recessive	Itch (MGI:1202301)
chr20	34516383	34540957	20q12-q13.11	20q11.22	607167	DYNLRB1, DNCL2A, DNLC2A	Dynein, light chain, roadblock type, 1	DYNLRB1	83658	ENSG00000125971			Dynlrb1 (MGI:1914318)
chr20	34546822	34560344	20cen-q13	20q11.22	601242	MAP1ALC3, MAP1BLC3	Microtubule-associated proteins 1A and 1B, light chain 3	MAP1LC3A	84557	ENSG00000101460			Map1lc3a (MGI:1915661)
chr20	34560541	34677284	20q11.22	20q11.22	608528	PIGU, CDC91L1	Phosphatidylinositol glycan anchor biosynthesis class U protein	PIGU	128869	ENSG00000101464			Pigu (MGI:3039607)
chr20	34704307	34713438	20q11.2	20q11.22	617549	TP53INP2, PIGU, DOR, C20orf110	Tumor protein p53-inducible nuclear protein 2	TP53INP2	58476	ENSG00000078804			Trp53inp2 (MGI:1915978)
chr20	34714773	34825648	20q11	20q11.22	605299	NCOA6, ASC2, RAP250, NRC, PRIP	Nuclear receptor coactivator 6	NCOA6	23054	ENSG00000198646			
chr20	34844719	34872857	20q11.2	20q11.22	612342	GGT7, GGTL3, GGTL5, GGT4	Gamma-glutamyltransferase 7	GGT7	2686	ENSG00000131067			Ggt7 (MGI:1913385)
chr20	34874941	34927965	20q11.22	20q11.22	605832	ACSS2, ACS	Acetyl-CoA synthetase short-chain family member 2	ACSS2	55902	ENSG00000131069			Acss2 (MGI:1890410)
chr20	34928432	34956026	20q11.2	20q11.22	601002	GSS, GSHS	Glutathione synthetase	GSS	2937	ENSG00000100983		Glutathione synthetase deficiency, 266130 (3), Autosomal recessive; Hemolytic anemia due to glutathione synthetase deficiency, 231900 (3), Autosomal recessive	Gss (MGI:95852)
chr20	34955834	35002436	20q11.22	20q11.22	609928	MYH7B, MYH14, KIAA1512	Myosin, heavy chain 7B, cardiac muscle, beta	MYH7B	57644	ENSG00000078814			Myh7b (MGI:3710243)
chr20	34990375	34990496	20q11.22	20q11.22	613614	MIR499, MIRN499	Micro RNA 499	MIR499A	574501				
chr20	35002403	35092834	20q11.23	20q11.22	608430	TRPC4AP, TRUSS	TRPC4-associated protein	TRPC4AP	26133	ENSG00000100991			Trpc4ap (MGI:1930751)
chr20	35115356	35147357	20q11.22	20q11.22	610302	EDEM2	Endoplasmic reticulum degradation-enhancing alpha-mannosidase-like protein 2	EDEM2	55741	ENSG00000088298			Edem2 (MGI:1915540)
chr20	35171936	35215988	20q11.2	20q11.22	600646	PROCR, EPCR, CCCA, CCD41	Protein C receptor	PROCR	10544	ENSG00000101000			Procr (MGI:104596)
chr20	35226735	35277000	20q11.2	20q11.22	604871	MMP25	Matrix metalloproteinase 24	MMP24	10893	ENSG00000125966			Mmp24 (MGI:1341867)
chr20	35278905	35284815	20q11.2	20q11.22	602912	EIF6, EIF3A, ITGB4BP	Eukaryotic translation initiation factor 6	EIF6	3692	ENSG00000242372			Eif6 (MGI:1196288)
chr20	35302565	35412141	20q11.22	20q11.22	611797	UQCC, CBP3, BFZB, C20orf44	Ubiquinol-cytochrome C reductase complex chaperone	UQCC1	55245	ENSG00000101019			Uqcc1 (MGI:1929472)
chr20	35433346	35454745	20q11.2	20q11.22	601146	GDF5, CDMP1, SYNS2, OS5, BDA1C, SYM1B	Growth/differentiation factor-5 (cartilage-derived morphogenetic protein-1)	GDF5	8200	ENSG00000125965	mutation identified in 1 AMDHT family	?Acromesomelic dysplasia, Hunter-Thompson type, 201250 (3), Autosomal recessive; Brachydactyly, type A1, C, 615072 (3), Autosomal recessive, Autosomal dominant; Brachydactyly, type A2, 112600 (3), Autosomal dominant; Brachydactyly, type C, 113100 (3), Autosomal dominant; Chondrodysplasia, Grebe type, 200700 (3), Autosomal recessive; Du Pan syndrome, 228900 (3), Autosomal recessive; Multiple synostoses syndrome 2, 610017 (3), Autosomal dominant; {Osteoarthritis-5}, 612400 (3); Symphalangism, proximal, 1B, 615298 (3)	Gdf5 (MGI:95688)
chr20	35455136	35517530	20q11.2	20q11.22	609689	CEP2, CEP250, CNAP1	Centrosomal protein 2	CEP250	11190	ENSG00000126001			Cep250 (MGI:108084)
chr20	35542028	35557633	20q11.22	20q11.22	616971	ERGIC3, C2orf47	Endoplasmic reticulum-golgi intermediate compartment protein 3	ERGIC3	51614	ENSG00000125991			Ergic3 (MGI:1913616)
chr20	35615855	35621093	20q11.2	20q11.22	603038	SPAG4	Sperm-associated antigen-4	SPAG4	6676	ENSG00000061656			Spag4 (MGI:2444120)
chr20	35626030	35664955	20q11.22	20q11.22	604205	CPNE1, CPN1	Copine I	CPNE1	8904	ENSG00000214078			Cpne1 (MGI:2386621)
chr20	35648924	35664955	20q11.2	20q11.22	607179	RBM12, KIAA0765, SCZD19	RNA-binding motif protein 12	RBM12	10137	ENSG00000244462		{Schizophrenia 19, susceptibility to}, 617629 (3), Autosomal dominant	Rbm12 (MGI:1922960)
chr20	35668687	35699364	20q11.22	20q11.22	603485	NFS1, NIFS	Nitrogen fixation gene 1	NFS1	9054	ENSG00000244005			Nfs1 (MGI:1316706)
chr20	35703608	35742335	20q11.22	20q11.22	604739	RBM39, CAPER, RNPC2	RNA binding motif protein 39	RBM39	9584	ENSG00000131051			Rbm39 (MGI:2157953)
chr20	35772000	35950371	20q11.1-q11.23	20q11.22-q11.23	610335	PHF20, GLEA2, HCA58	PHD finger protein 20	PHF20	51230	ENSG00000025293			Phf20 (MGI:2444148)
chr20	35953616	35955358	20q11.23	20q11.23	610416	SCAND1, RAZ1, SDP1	SCAN domain-containing 1	SCAND1	51282	ENSG00000171222			Scand1 (MGI:1343132)
chr20	36045617	36050959	20q11.23	20q11.23	617037	NORAD, LINC00657	Noncoding RNA activated by DNA damage	NORAD	647979				
chr20	36064890	36232798	20q11.2-q12	20q11.23	602879	EPB41L1, MRD11	Erythrocyte membrane protein band 4.1-like 1	EPB41L1	2036	ENSG00000088367	mutation identified in 1 patient	?Mental retardation, autosomal dominant 11, 614257 (3)	Epb41l1 (MGI:103010)
chr20	36236135	36256940	20q11.23	20q11.23	617365	AAR2, C20orf4	Aar2 splicing factor, S. cerevisiae, homolog of	AAR2	25980	ENSG00000131043			Aar2 (MGI:1915545)
chr20	36306322	36528636	20q11.23	20q11.23	616191	DLGAP4, SAPAP4, KIAA0964	Discs LARGE-associated protein 4	DLGAP4	22839	ENSG00000080845	noncoding RNAs transcribed from intron 1 are expressed in all tissues		Dlgap4 (MGI:2138865)
chr20	36541483	36549822	20q11.23	20q11.23	609905	MYL9, MLC2	Myosin light chain 9, regulatory	MYL9	10398	ENSG00000101335			Myl9 (MGI:2138915)
chr20	36573472	36593951	20q11.2-q12	20q11.23	607294	TGIF2	Transforming growth factor-beta-induced factor 2	TGIF2	60436	ENSG00000118707			Tgif2 (MGI:1915299)
chr20	36612518	36646215	20q11.23	20q11.23	606577	SLA2, SLAP2	SRC-like adaptor 2	SLA2	84174	ENSG00000101082			Sla2 (MGI:1925049)
chr20	36651765	36746137	20q11.21-q11.23	20q11.23	605273	NDRG3	N-myc downstream-regulated gene 3	NDRG3	57446	ENSG00000101079			Ndrg3 (MGI:1352499)
chr20	36751790	36773826	20q11.23	20q11.23	609175	DSN1, C20orf172	DSN1 homolog, MIS12 kinetochore complex component	DSN1	79980	ENSG00000149636			Dsn1 (MGI:1914184)
chr20	36890881	36951842	20q11.2	20q11.23	606754	SAMHD1, AGS5, DCIP, CHBL2	SAM domain- and HD domain-containing protein 1	SAMHD1	25939	ENSG00000101347	mutation identified in 1 CHBL2 family	Aicardi-Goutieres syndrome 5, 612952 (3), Autosomal recessive; ?Chilblain lupus 2, 614415 (3), Autosomal dominant	Samhd1 (MGI:1927468)
chr20	36996348	37096214	20q11.2	20q11.23	116957	RBL1, CP107	Retinoblastoma-like 1 (p107)	RBL1	5933	ENSG00000080839			Rbl1 (MGI:103300)
chr20	37179045	37241622	20q12-q13.1	20q11.23	180490	RPN2	Ribophorin II	RPN2	6185	ENSG00000118705			Rpn2 (MGI:98085)
chr20	37251085	37261816	20q11.2	20q11.23	139190	GHRH, GHRF	Growth hormone releasing hormone (somatocrinin)	GHRH	2691	ENSG00000118702		Gigantism due to GHRF hypersecretion (1); ?Isolated growth hormone deficiency due to defect in GHRF (1)	Ghrh (MGI:95709)
chr20	37344684	37405431	20q12-q13	20q11.23	190090	SRC, ASV, SRC1, THC6	Protooncogene SRC, Rous sarcoma	SRC	6714	ENSG00000197122	mutation identified in 1 THC6 family	Colon cancer, advanced, somatic, 114500 (3); ?Thrombocytopenia 6, 616937 (3), Autosomal dominant	Src (MGI:98397)
chr20	37517416	37527930	20q11.2-q12	20q11.23	613110	BLCAP, BC10	Bladder cancer-associated protein	BLCAP	10904	ENSG00000166619			Blcap (MGI:1858907)
chr20	37521205	37523689	20q11.2-q12	20q11.23	603106	NNAT	Neuronatin	NNAT	4826	ENSG00000053438			Nnat (MGI:104716)
chr20	37693954	37872128	20q11.2-q12	20q11.23	611537	CTNNBL1, NAP	Catenin, beta-like, 1	CTNNBL1	56259	ENSG00000132792			Ctnnbl1 (MGI:1913892)
chr20	37903096	37945349	20q11.23	20q11.23	616537	VSTM2L, C20orf102	V-SET and transmembrane domains-containing protein 2-like	VSTM2L	128434	ENSG00000132821			Vstm2l (MGI:2685537)
chr20	37983006	38033467	20q11.23	20q11.23	614425	TTI1, KIAA0406	TELO2-interacting protein 1	TTI1	9675	ENSG00000101407			Tti1 (MGI:1922675)
chr20	38033461	38092365	20q11.23	20q11.23	614694	RPRD1B, CREPT	Regulation of nuclear pre-mRNA domain-containing protein 1B	RPRD1B	58490	ENSG00000101413			Rprd1b (MGI:1917720)
chr20	38127386	38166577	20q11.2-q12	20q11.23	190196	TGM2	Transglutaminase-2 (C polypeptide, protein-glutamine-gamma-glutamyltransferase)	TGM2	7052	ENSG00000198959			Tgm2 (MGI:98731)
chr20	38304149	38337504	20q11.23-q12	20q11.23	109195	BPI	Bactericidal/permeability-increasing protein	BPI	671	ENSG00000101425			Bpi (MGI:3045315)
chr20	38346410	38377010	20q11.23-q12	20q11.23	151990	LBP	Lipopolysaccharide-binding protein	LBP	3929	ENSG00000129988			Lbp (MGI:1098776)
chr20	38581194	38588462	20q11.23	20q11.23	611396	ADIG, SMAF1	Adipogenin	ADIG	149685	ENSG00000182035			
chr20	38724461	38729371	20q11.23	20q11.23	616440	SLC32A1, VGAT, VIAAT	Solute carrier family 32 (GABA vesicular transporter), member 1	SLC32A1	140679	ENSG00000101438			Slc32a1 (MGI:1194488)
chr20	38805692	38923023	20q11.22-q12	20q11.23	613275	PPP1R16B, TIMAP, KIAA0823	Protein phosphatase 1, regulatory subunit 16B	PPP1R16B	26051	ENSG00000101445			Ppp1r16b (MGI:2151841)
chr20	39000000	51200000	20q12-q13.1		603694	NIDDM3	Noninsulin-dependent diabetes mellitus 3		50982			{Diabetes mellitus, noninsulin-dependent}, 125853 (2), Autosomal dominant	
chr20	39000000	47800000	20q12-q13.12		613938	PSMNSW	Parasomnia, sleepwalking type		100653383		between 55.6 and 61.4 cM	Parasomnia, sleepwalking type, 613938 (2), Autosomal dominant, Multifactorial	
chr20	40004460	40008528	20q11.23	20q12	617038	LINC01370, HILNC25	Long intergenic noncoding RNA 1370	LINC01370	100505663				
chr20	40685847	40689239	20q11.2-q13.1	20q12	608968	MAFB, KRML, MCTO, DURS3	v-MAF musculoaponeurotic fibrosarcoma oncogene family, protein B	MAFB	9935	ENSG00000204103		Duane retraction syndrome 3, 617041 (3), Autosomal dominant; Multicentric carpotarsal osteolysis syndrome, 166300 (3), Autosomal dominant	Mafb (MGI:104555)
chr20	41028817	41124486	20q12-q13.1	20q12	126420	TOP1	Topoisomerase (DNA) I	TOP1	7150	ENSG00000198900	pseudogenes on chr.1 and 22	DNA topoisomerase I, camptothecin-resistant (3)	Top1 (MGI:98788)
chr20	41137518	41175720	20q12-q13.1	20q12	172420	PLCG1, PLC1	Phospholipase C, gamma 1 (formerly subtype 148)	PLCG1	5335	ENSG00000124181			Plcg1 (MGI:97615)
chr20	41178448	41317639	20q12	20q12	609598	ZHX3, KIAA0395	Zinc finger and homeodomain protein-3	ZHX3	23051	ENSG00000174306			Zhx3 (MGI:2444772)
chr20	41340778	41360584	20q	20q12	605520	LPIN3	Lipin 3	LPIN3	64900	ENSG00000132793			Lpin3 (MGI:1891342)
chr20	41402100	41618493	20q11.23-q12	20q12	616114	CHD6, CHD5, RIGB	Chromodomain helicase DNA-binding protein 6	CHD6	84181	ENSG00000124177			Chd6 (MGI:1918639)
chr20	42029958	43189916	20q12-q13.1	20q12-q13	608712	PTPRT, KIAA0283	Protein-tyrosine phosphatase, receptor-type, T	PTPRT	11122	ENSG00000196090			Ptprt (MGI:1321152)
chr20	43100000	64444167	20q13		608878	GEVQ2	Gene expression, variation in, quantitative trait locus on chromosome 20		474333			{Gene expression, variation in, QTL}, 608878 (2)	
chr20	43100000	43500000	20q13.11		603388	GRD2	Graves disease, susceptibility to, 2		50976			{Graves disease, susceptibility to, 2}, 603388 (2)	
chr20	43100000	64444167	20q13		608656	HPC3	Prostate cancer, hereditary, 3		408259			{Prostate cancer, susceptibility to, 3}, 176807 (2), Autosomal dominant	
chr20	43100000	64444167	20q13		612566	IBD24	Inflammatory bowel disease 24		100270798		associated with rs2315008 and rs4809330	{Inflammatory bowel disease 24}, 612566 (2)	
chr20	43100000	64444167	20q13		612950	PSORS12	Psoriasis susceptibility 12				associated with rs495337	{Psoriasis susceptibility 12}, 612950 (2)	
chr20	43100000	64444167	20q13		610066	SLEB8	Systemic lupus erythematosus, susceptibility to, 8		100188804			{Systemic lupus erythematosus, susceptibility to, 8}, 610066 (2)	
chr20	43457863	43463604	20q13.11	20q13.11	601944	SRSF6, SFRS6, SRp55	Splicing factor, serine/arginine-rich, 6	SRSF6	6431	ENSG00000124193			Srsf6 (MGI:1915246)
chr20	43507679	43541894	20q12	20q13.12	608802	L3MBTL, L3MBTL1, KIAA0681	L3MBT-like	L3MBTL1	26013	ENSG00000185513			L3mbtl1 (MGI:2676663)
chr20	43558994	43585632	20q13.2	20q13.12	607589	SGK2	Serum/glucocorticoid-regulated kinase 2	SGK2	10110	ENSG00000101049			Sgk2 (MGI:1351318)
chr20	43590612	43647295	20q13.12	20q13.12	617094	IFT52	Intraflagellar transport 52, Chlamydomonas, homolog of	IFT52	51098	ENSG00000101052		Short-rib thoracic dysplasia 16 with or without polydactyly, 617102 (3), Autosomal recessive	Ift52 (MGI:2387217)
chr20	43667018	43716495	20q13.1	20q13.12	601415	MYBL2, BMYB	v-myb avian myeloblastosis viral oncogene homolog-like 2	MYBL2	4605	ENSG00000101057			Mybl2 (MGI:101785)
chr20	43914851	44069615	20q13.12	20q13.12	611163	TOX2, GCX1, C20orf100	TOX high mobility group box family member 2	TOX2	84969	ENSG00000124191			Tox2 (MGI:3611233)
chr20	44111696	44187945	20q12	20q13.12	605267	JPH2, JP2, CMH17	Junctophilin 2	JPH2	57158	ENSG00000149596		Cardiomyopathy, hypertrophic, 17, 613873 (3), Autosomal dominant	Jph2 (MGI:1891496)
chr20	44302837	44311251	20q13.12	20q13.12	612029	FIT2, C20orf142	Fat-inducing transcript 2	FITM2	128486	ENSG00000197296			Fitm2 (MGI:2444508)
chr20	44355800	44432844	20q12-q13.1	20q13.12	600281	HNF4A, TCF14, MODY1, FRTS4	Hepatocyte nuclear factor 4, alpha (transcription factor-14)	HNF4A	3172	ENSG00000101076		{Diabetes mellitus, noninsulin-dependent}, 125853 (3), Autosomal dominant; Fanconi renotubular syndrome 4, with maturity-onset diabetes of the young, 616026 (3), Autosomal dominant; MODY, type I, 125850 (3), Autosomal dominant	Hnf4a (MGI:109128)
chr20	44496220	44522115	20q13.1-q13.3	20q13.12	607165	SERINC3, TDE1	Serine incorporator 3	SERINC3	10955	ENSG00000132824			Serinc3 (MGI:1349457)
chr20	44531780	44619036	20q	20q13.12	604932	PKIG	Protein kinase, cAMP-dependent catalytic, inhibitor gamma	PKIG	11142	ENSG00000168734			Pkig (MGI:1343086)
chr20	44619518	44651757	20q13.11	20q13.12	608958	ADA	Adenosine deaminase	ADA	100	ENSG00000196839		Adenosine deaminase deficiency, partial, 102700 (3), Autosomal recessive, Somatic mosaicism; Severe combined immunodeficiency due to ADA deficiency, 102700 (3), Autosomal recessive, Somatic mosaicism	Ada (MGI:87916)
chr20	44714203	44728040	20q12-q13	20q13.12	603399	WISP2	Wnt-1 inducible signaling pathway protein 2	WISP2	8839	ENSG00000064205			Wisp2 (MGI:1328326)
chr20	44745604	44752312	20q12-q13	20q13.12	607368	KCNK15, TASK5	Potassium channel, subfamily K, member 15	KCNK15	60598	ENSG00000124249			Kcnk15 (MGI:2675209)
chr20	44751803	44810337	20q13.3	20q13.12	611601	RIMS4	Protein regulating synaptic membrane exocytosis 4	RIMS4	140730	ENSG00000101098			Rims4 (MGI:2674366)
chr20	44885598	44908531	20q13.1	20q13.12	601289	YWHAB	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide	YWHAB	7529	ENSG00000166913			Ywhab (MGI:1891917)
chr20	44942129	44960472	20q13.12	20q13.12	616049	TOMM34, TOM34	Translocase of outer mitochondrial membrane 34, yeast, homolog of	TOMM34	10953	ENSG00000025772			Tomm34 (MGI:1914395)
chr20	44966469	45079976	20q13.2	20q13.12	604965	STK4, MST1, KRS2, TIIAC	Serine/threonine protein kinase 4	STK4	6789	ENSG00000101109		T-cell immunodeficiency, recurrent infections, autoimmunity, and cardiac malformations, 614868 (3)	Stk4 (MGI:1929004)
chr20	45091213	45101111	20q13.12	20q13.12	602905	KCNS1, KV9.1	Potassium channel, voltage-gated, delayed-rectifier, subfamily S, member 1	KCNS1	3787	ENSG00000124134			Kcns1 (MGI:1197019)
chr20	45109451	45116320	20q12-q13.2	20q13.12	605161	WFDC5, PRG5, WAP1	WAP 4-disulfide core domain 5	WFDC5	149708	ENSG00000175121			Wfdc5 (MGI:2384800)
chr20	45123425	45124464	20q12-q13.1	20q13.12	609872	WFDC12, WAP2, SWAM2	Wap 4-disulfide core domain 12	WFDC12	128488	ENSG00000168703			
chr20	45174898	45176543	20q12-q13	20q13.12	182257	PI3	Protease inhibitor 3, skin derived (SKALP)	PI3	5266	ENSG00000124102			
chr20	45206963	45209772	20q12-q13.1	20q13.12	182140	SEMG1, SEMG	Semenogelin	SEMG1	6406	ENSG00000124233			
chr20	45221368	45224457	20q12-q13.1	20q13.12	182141	SEMG2	Semenogelin II	SEMG2	6407	ENSG00000124157			
chr20	45252238	45254563	20q13.12	20q13.12	107285	SLPI, HUSI	Secretory leukocyte protease inhibitor	SLPI	6590	ENSG00000124107			Slpi (MGI:109297)
chr20	45293445	45308565	20q13.1-q13.2	20q13.12	603897	MATN4	Matrilin 4	MATN4	8785	ENSG00000124159			Matn4 (MGI:1328314)
chr20	45306835	45319676	20q13.12	20q13.12	616104	RBPJL, RBPL, SUHL	RBPJ-like protein	RBPJL	11317	ENSG00000124232			Rbpjl (MGI:1196616)
chr20	45325287	45348423	20q12-q13	20q13.12	600017	SDC4	Syndecan 4 (amphiglycan, ryudocan)	SDC4	6385	ENSG00000124145			Sdc4 (MGI:1349164)
chr20	45361936	45376801	20q13.12	20q13.12	612979	SYS1	Sys1 golgi-localized integral membrane protein, S. cerevisiae, homolog of	SYS1	90196	ENSG00000204070			Sys1 (MGI:1913710)
chr20	45373879	45378549	20q13.12	20q13.12	617316	TP53TG5	TP53 target gene 5	TP53TG5	27296	ENSG00000124251			Trp53tg5 (MGI:1920853)
chr20	45405992	45410609	20q12	20q13.12	611453	DBNDD2, HSMNP1	Dysbindin domain-containing 2	DBNDD2	55861	ENSG00000244274			Dbndd2 (MGI:106562)
chr20	45416066	45426244	20q13.12	20q13.12	610272	PIGT, NDAP, PNH2, MCAHS3	Phosphatidylinositol glycan, class T	PIGT	51604	ENSG00000124155	mutation identified in 1 PNH2 family	Multiple congenital anomalies-hypotonia-seizures syndrome 3, 615398 (3), Autosomal recessive; ?Paroxysmal nocturnal hemoglobinuria 2, 615399 (3), Autosomal dominant, Somatic mutation	Pigt (MGI:1926178)
chr20	45469753	45481531	20q13.12	20q13.12	617548	WFDC2, HE4, WAP5	WAP 4-disulfide core domain 2	WFDC2	10406	ENSG00000101443			Wfdc2 (MGI:1914951)
chr20	45512460	45515623	20q12-q13.1	20q13.12	613941	SPINT3	Serin protease inhibitor, Kunitz-type, 3	SPINT3	10816	ENSG00000101446			
chr20	45540625	45547425	20q13.2	20q13.12	609031	SPINLW1, EPPIN, WAP7	Serine protease inhibitor-like protein with Kunitz and WAP domains 1	EPPIN	57119	ENSG00000101448			Wfdc6a (MGI:2684968)
chr20	45791936	45811426	20q13.12	20q13.12	611388	DNTTIP1, TDIF1, C20orf167	Deoxynucleotidyltransferase, terminal, interacting protein 1	DNTTIP1	116092	ENSG00000101457			Dnttip1 (MGI:1923483)
chr20	45812575	45816956	20q13.12	20q13.12	605574	UBE2C, UBCH10	Ubiquitin-conjugating enzyme E2C	UBE2C	11065	ENSG00000175063			Ube2c (MGI:1915862)
chr20	45823213	45833328	20q12-q13.11	20q13.12	191039	TNNC2	Troponin C2, fast	TNNC2	7125	ENSG00000101470			Tnnc2 (MGI:98780)
chr20	45841720	45857408	20q13.1	20q13.12	608123	ACOT8, PTE1	Acyl-CoA thioesterase 8	ACOT8	10005	ENSG00000101473			Acot8 (MGI:2158201)
chr20	45890143	45898819	20q13.1	20q13.12	613111	CTSA, PPGB, GSL, NGBE, GLB2	Cathepsin A (protective protein for beta-galactosidase)	CTSA	5476	ENSG00000064601		Galactosialidosis, 256540 (3), Autosomal recessive	Ctsa (MGI:97748)
chr20	45898619	45912363	20q12-q13.1	20q13.12	172425	PLTP, HDLCQ9	Phospholipid transfer protein	PLTP	5360	ENSG00000100979		[High density lipoprotein cholesterol level QTL 9] (3)	Pltp (MGI:103151)
chr20	45948652	45972909	20q11.2-q13.1	20q13.12	610827	ZNF335, NIF1, NIF2, MCPH10	Zinc finger protein 335	ZNF335	63925	ENSG00000198026	mutation identified in 1 MCPH10 family	?Microcephaly 10, primary, autosomal recessive, 615095 (3), Autosomal recessive	Zfp335 (MGI:2682313)
chr20	46008907	46016560	20q11.2-q13.1	20q13.12	120361	MMP9, CLG4B, MANDP2	Matrix metalloproteinase 9 (gelatinase B, 92kD type IV collagenase)	MMP9	4318	ENSG00000100985		Metaphyseal anadysplasia 2, 613073 (3)	Mmp9 (MGI:97011)
chr20	46021689	46060149	20q12-q13.1	20q13.12	606726	SLC12A5, KCC2, KIAA1176, EIEE34, EIG14	Solute carrier family 12, (potassium-chloride transporter) member 5	SLC12A5	57468	ENSG00000124140		{Epilepsy, idiopathic generalized, susceptibility to, 14}, 616685 (3), Autosomal dominant; Epileptic encephalopathy, early infantile, 34, 616645 (3), Autosomal recessive	Slc12a5 (MGI:1862037)
chr20	46060984	46089940	20q13.1	20q13.12	616825	NCOA5, CIA	Nuclear receptor coactivator 5	NCOA5	57727	ENSG00000124160			Ncoa5 (MGI:2385165)
chr20	46118241	46129744	20q12-q13.2	20q13.12	109535	CD40, TNFRSF5	CD40 antigen	CD40	958	ENSG00000101017		Immunodeficiency with hyper-IgM, type 3, 606843 (3), Autosomal recessive	Cd40 (MGI:88336)
chr20	46173732	46308497	20q13.1	20q13.12	609920	CDH22	Cadherin 22	CDH22	64405	ENSG00000149654			Cdh22 (MGI:1341843)
chr20	46366044	46407050	20q13	20q13.12	606421	ELMO2, CED12, VMPI	Engulfment and cell motility gene 2	ELMO2	63916	ENSG00000062598		Vascular malformation, primary intraosseous, 606893 (3), Autosomal recessive	Elmo2 (MGI:2153045)
chr20	46557822	46684484	20q12-q13.1	20q13.12	606411	SLC13A3, NADC3	Solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 3	SLC13A3	64849	ENSG00000158296			Slc13a3 (MGI:2149635)
chr20	46684364	46689636	20q13.12	20q13.12	608679	TP53RK, PRPK, GAMOS4	TP53-regulating kinase	TP53RK	112858	ENSG00000172315		Galloway-Mowat syndrome 4, 617730 (3), Autosomal recessive	Trp53rkb,Trp53rka (MGI:1918294,MGI:1914050)
chr20	46708357	46736346	20q13.1	20q13.12	606145	SLC2A10, GLUT10, ATS	Solute carrier family 2 (facilitated glucose transporter), member 10	SLC2A10	81031	ENSG00000197496		Arterial tortuosity syndrome, 208050 (3), Autosomal recessive	Slc2a10 (MGI:2156687)
chr20	46894623	47188843	20q13.1	20q13.12	601654	EYA2	Eyes absent, Drosophila, homolog of, 2	EYA2	2139	ENSG00000064655			Eya2 (MGI:109341)
chr20	47209213	47357779	20q13.12	20q13.12	615713	ZMYND8, PRKCBP1	Zinc finger MYND domain-containing protein 8	ZMYND8	23613	ENSG00000101040			Zmynd8 (MGI:1918025)
chr20	47501856	47656876	20q12	20q13.12	601937	NCOA3, AIB1, TNRC14	Nuclear receptor coactivator 3 (amplified in breast cancer-1)	NCOA3	8202	ENSG00000124151			Ncoa3 (MGI:1276535)
chr20	47654568	47786615	20q13.12	20q13.12	610013	SULF2, KIAA1247	Sulfatase 2	SULF2	55959	ENSG00000196562			Sulf2 (MGI:1919293)
chr20	48624251	48827882	20q13.13	20q13.13	606905	PREX1, KIAA1415	Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1	PREX1	57580	ENSG00000124126			Prex1 (MGI:3040696)
chr20	48921720	49036692	20q13.13	20q13.13	605371	ARFGEF2, BIG2, PVNH2	ADP-ribosylation factor guanine nucleotide-exchange factor 2, brefeldin A-inhibited	ARFGEF2	10564	ENSG00000124198		Periventricular heterotopia with microcephaly, 608097 (3), Autosomal recessive	Arfgef2 (MGI:2139354)
chr20	49046245	49096959	20q13	20q13.13	601342	CSE1L, CAS	Chromosome segregation-1, yeast, homolog of, like	CSE1L	1434	ENSG00000124207			Cse1l (MGI:1339951)
chr20	49113338	49219294	20q13.1	20q13.13	601716	STAU1, STAU	Staufen, Drosophila, homolog of, 1	STAU1	6780	ENSG00000124214			Stau1 (MGI:1338864)
chr20	49219294	49244076	20q13.13	20q13.13	616621	DDX27, RHLP	DEAD box polypeptide 27	DDX27	55661	ENSG00000124228			Ddx27 (MGI:2385884)
chr20	49363876	49484032	20q13.2	20q13.13	600397	KCNB1, EIEE26	Potassium voltage-gated channel, Shab-related subfamily, member 1	KCNB1	3745	ENSG00000158445		Epileptic encephalopathy, early infantile, 26, 616056 (3), Autosomal dominant	Kcnb1 (MGI:96666)
chr20	49503873	49568169	20q13.11-q13.13	20q13.13	601699	PTGIS, CYP8A1, PGIS, CYP8	Prostaglandin I2 synthase	PTGIS	5740	ENSG00000124212		Hypertension, essential, 145500 (3), Multifactorial	Ptgis (MGI:1097156)
chr20	49632944	49713883	20q13.1-q13.2	20q13.13	604016	B4GALT5	Beta-1,4-galactosyltransferase 5	B4GALT5	9334	ENSG00000158470	previously mapped to chr.11		B4galt5 (MGI:1927169)
chr20	49812712	49892241	20q13.13	20q13.13	612730	SLC9A8, NHE8, KIAA0939	Solute carrier family 9 (sodium/hydrogen exchanger), member 8	SLC9A8	23315	ENSG00000197818			Slc9a8 (MGI:1924281)
chr20	49903390	49915542	20q13.1-q13.2	20q13.13	607662	SPATA2, KIAA0757	Spermatogenesis-associated protein 2	SPATA2	9825	ENSG00000158480			Spata2 (MGI:2146885)
chr20	49936376	49953884	20q13	20q13.13	612451	RNF114, ZNF313	Ring finger protein 114	RNF114	55905	ENSG00000124226			Rnf114 (MGI:1933159)
chr20	49982975	49988885	20q13.1	20q13.13	604238	SNAI1	Snail 1, Drosophila, homolog of	SNAI1	6615	ENSG00000124216	pseudogene on 2q34		Snai1 (MGI:98330)
chr20	50081123	50115958	20q13.2	20q13.13	602995	UBE2V1, UEV1	Ubiquitin-conjugating enzyme E2 variant 1	UBE2V1	7335	ENSG00000244687			Ube2v1 (MGI:1913839)
chr20	50123736	50153797	20q13.2	20q13.13	610994	TMEM189, KUA	Transmembrane protein 189	TMEM189	387521	ENSG00000240849			Tmem189 (MGI:2142624)
chr20	50190582	50192689	20q13.1	20q13.13	189965	CEBPB, TCF5	CCAAT/enhancer-binding protein (C/EBP), beta (transcription factor-5)	CEBPB	1051	ENSG00000172216			Cebpb (MGI:88373)
chr20	50510320	50584761	20q13.1-q13.2	20q13.13	176885	PTPN1, PTP1B	Protein tyrosine phosphatase, nonreceptor-type, 1	PTPN1	5770	ENSG00000196396	20pter-q12 by REa	{Insulin resistance, susceptibility to}, 125853 (3), Autosomal dominant	Ptpn1 (MGI:97805)
chr20	50731543	50753740	20q13.13	20q13.13	608975	PARD6B	Partitioning-defective protein 6, C. elegans, homolog of, beta	PARD6B	84612	ENSG00000124171			Pard6b (MGI:2135605)
chr20	50794893	50877735	20q13.13	20q13.13	607471	BCAS4	Breast carcinoma amplified sequence 4	BCAS4	55653	ENSG00000124243			
chr20	50888917	50931212	20q13.13	20q13.13	611386	ADNP, ADNP1, KIAA0784, HVDAS, MRD28	Activity-dependent neuroprotector homeobox	ADNP	23394	ENSG00000101126		Helsmoortel-van der Aa syndrome, 615873 (3), Autosomal dominant	Adnp (MGI:1338758)
chr20	50934854	50958563	20q13.13	20q13.13	603503	DPM1, MPDS, CDGIE	Dolichyl-phosphate mannosyltransferase 1, catalytic subunit	DPM1	8813	ENSG00000000419		Congenital disorder of glycosylation, type Ie, 608799 (3), Autosomal recessive	Dpm1 (MGI:1330239)
chr20	51003655	51023175	20q13	20q13.13	603788	KCNG1, KH2	Potassium voltage-gated channel, subfamily G, member 1	KCNG1	3755	ENSG00000026559			Kcng1 (MGI:3616086)
chr20	51200000	64444167	20q13.2-q13.3		610248	DFNB65	Deafness, autosomal recessive 65	DFNB65	692219		max lod at D20S840	Deafness, autosomal recessive 65, 610248 (2), Autosomal recessive	
chr20	51200000	64444167	20q13.2-q13.3		130180	EEGV1, EEGL	Electroencephalographic variant pattern 1	EEGV1	1940				
chr20	51386956	51562856	20q13.2-q13.3	20q13.2	600490	NFATC2, NFATP	Nuclear factor of activated T cells, cytoplasmic, calcineurin-dependent 2	NFATC2	4773	ENSG00000101096			Nfatc2 (MGI:102463)
chr20	51782716	51802522	20q13.13-q13.2	20q13.2	607343	SALL4, HSAL4	sal-like 4	SALL4	57167	ENSG00000101115		Duane-radial ray syndrome, 607323 (3), Autosomal dominant; IVIC syndrome, 147750 (3), Autosomal dominant	Sall4 (MGI:2139360)
chr20	52972308	53495329	20q13.2	20q13.2	614118	TSHZ2	Teashirt zinc finger homeobox 2	TSHZ2	128553	ENSG00000182463			Tshz2 (MGI:2153084)
chr20	53567064	53608968	20q13.2	20q13.2	602967	ZNF217	Zinc finger protein-217	ZNF217	7764	ENSG00000171940			Zfp217 (MGI:2685408)
chr20	53943537	54070764	20q13.2	20q13.2	602968	BCAS1, NABC1	Breast carcinoma amplified sequence	BCAS1	8537	ENSG00000064787			Bcas1 (MGI:1924210)
chr20	54145730	54174031	20q13.2-q13.3	20q13.2	126065	CYP24A1, CYP24, HCINF1	Cytochrome P450, family 24, subfamily A, polypeptide 1 (vitamin D 24-hydroxylase)	CYP24A1	1591	ENSG00000019186		Hypercalcemia, infantile, 1, 143880 (3), Autosomal recessive	Cyp24a1 (MGI:88593)
chr20	54207962	54219952	20q13.2	20q13.2	604898	PFDN4, C1	Prefoldin 4	PFDN4	5203	ENSG00000101132			Pfdn4 (MGI:1923512)
chr20	54475471	54651170	20q13.2	20q13.2	608334	DOK5	Docking protein 5	DOK5	55816	ENSG00000101134			Dok5 (MGI:1924079)
chr20	55997356	56005471	20q13.2	20q13.2	615029	CBLN4	Precerebellin 4	CBLN4	140689	ENSG00000054803			Cbln4 (MGI:2154433)
chr20	56248731	56249814	20q13.2	20q13.2	155540	MC3R, BMIQ9	Melanocortin-3 receptor	MC3R	4159	ENSG00000124089		{Mycobacterium tuberculosis, protection against}, 607948 (3); {Obesity, severe, susceptibility to, BMIQ9}, 602025 (3)	Mc3r (MGI:96929)
chr20	56369388	56392336	20q13.2-q13.3	20q13.2	603072	AURKA, STK15, AURORA2, BTAK, ARK1, STK6, AIK	Aurora kinase A	AURKA	6790	ENSG00000087586		{Colon cancer, susceptibility to}, 114500 (3), Autosomal dominant	Aurka (MGI:894678)
chr20	56392370	56404525	20q13.2	20q13.2-q13.3	600369	CSTF1	Cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kD	CSTF1	1477	ENSG00000101138			Cstf1 (MGI:1914587)
chr20	56400000	64444167	20q13.31-q13.33		612929	MTBS3	Mycobacterium tuberculosis, susceptibility to, 3		100302686		associated with rs3827103	{Mycobacterium tuberculosis, susceptibility to, 3}, 612929 (2)	
chr20	56629301	56639282	20q13.2	20q13.31	601602	TFAP2C	Transcription factor AP-2 gamma (activating enhancer-binding protein 2 gamma)	TFAP2C	7022	ENSG00000087510			Tfap2c (MGI:106032)
chr20	57168752	57266650	20q13.1-q13.3	20q13.31	112267	BMP7	Bone morphogenetic protein-7 (osteogenic protein-1)	BMP7	655	ENSG00000101144			Bmp7 (MGI:103302)
chr20	57329756	57343992	20q13.2-q13.3	20q13.31	605114	SPO11	Spo11, S. cerevisiae, homolog of	SPO11	23626	ENSG00000054796			Spo11 (MGI:1349669)
chr20	57391397	57409332	20q13.31	20q13.31	612428	RBM38, RNPC1	RNA-binding motif protein 38	RBM38	55544	ENSG00000132819			Rbm38 (MGI:1889294)
chr20	57495964	57525651	20q13.2	20q13.31	607022	CTCFL, BORIS	CCCTC-binding factor-like protein	CTCFL	140690	ENSG00000124092			Ctcfl (MGI:3652571)
chr20	57561080	57566460	20q13.31	20q13.31	614168	PCK1, PCKDC	Phosphoenolpyruvate carboxykinase-1 (soluble)	PCK1	5105	ENSG00000124253	mutation identified in 1 PCKDC family	?Phosphoenolpyruvate carboxykinase deficiency, cytosolic, 261680 (3), Autosomal recessive	Pck1 (MGI:97501)
chr20	57603845	57620575	20q13.31	20q13.31	606750	ZBP1, C20orf183, DLM1	Z-DNA binding protein 1 (tumor stroma and activated macrophage protein DLM1)	ZBP1	81030	ENSG00000124256			Zbp1 (MGI:1927449)
chr20	57648391	57711535	20q13	20q13.31	606564	PMEPA1, TMEPAI	Prostate transmembrane protein, androgen-induced	PMEPA1	56937	ENSG00000124225			Pmepa1 (MGI:1929600)
chr20	58309714	58367506	20q13.3	20q13.32	612966	RAB22A	Ras-associated protein RAB22A	RAB22A	57403	ENSG00000124209			Rab22a (MGI:105072)
chr20	58389118	58451100	20q13.3	20q13.32	605704	VAPB, VAPC, ALS8	Vesicle-associated membrane protein-associated protein B	VAPB	9217	ENSG00000124164		Amyotrophic lateral sclerosis 8, 608627 (3), Autosomal dominant; Spinal muscular atrophy, late-onset, Finkel type, 182980 (3), Autosomal dominant	Vapb (MGI:1928744)
chr20	58651252	58679525	20q13.32	20q13.32	603666	STX16, SYN16	Syntaxin 16	STX16	8675	ENSG00000124222		Pseudohypoparathyroidism, type IB, 603233 (3), Autosomal dominant	Stx16 (MGI:1923396)
chr20	58817614	58817693	20q13.3	20q13.32	610945	MIR296, MIRN296	Micro RNA 296	MIR296	407022				
chr20	58818225	58818312	20q13.32	20q13.32	614914	MIR298	Micro RNA 298	MIR298	100126296				
chr20	58818917	58850902	20q13.2	20q13.32	610540	GNASAS1, GNASAS, SANG, NESPAS	GNAS antisense RNA 1	GNAS-AS1	149775			Pseudohypoparathyroidism, type IB, 603233 (3), Autosomal dominant	
chr20	58839680	58911195	20q13.2	20q13.32	139320	GNAS, GNAS1, GPSA, POH, PHP1B, PHP1A, AHO, PHP1C, PITA3	GNAS complex locus (guanine nucleotide binding protein (G protein), alpha stimulating activity polypeptide 1)	GNAS	2778	ENSG00000087460		ACTH-independent macronodular adrenal hyperplasia, 219080 (3), Isolated cases; McCune-Albright syndrome, somatic, mosaic, 174800 (3); Osseous heteroplasia, progressive, 166350 (3), Autosomal dominant; Pituitary adenoma 3, multiple types, somatic, 617686 (3); Pseudohypoparathyroidism Ia, 103580 (3), Autosomal dominant; Pseudohypoparathyroidism Ib, 603233 (3), Autosomal dominant; Pseudohypoparathyroidism Ic, 612462 (3), Autosomal dominant; Pseudopseudohypoparathyroidism, 612463 (3), Autosomal dominant	Gnas (MGI:95777)
chr20	58981207	58995132	20q13	20q13.32	605297	TH1L, TH1	TH1, Drosophila, homolog of	NELFCD	51497	ENSG00000101158			Nelfcd (MGI:1926424)
chr20	58995186	59007253	20q13	20q13.32	603169	CTSZ	Cathepsin Z	CTSZ	1522	ENSG00000101160			Ctsz (MGI:1891190)
chr20	59016025	59026653	20q13.3	20q13.32	612901	TUBB1	Tubulin, beta-1	TUBB1	81027	ENSG00000101162		Macrothrombocytopenia, autosomal dominant, TUBB1-related, 613112 (3), Autosomal dominant	Tubb1 (MGI:107814)
chr20	59028677	59032366	20q13.3	20q13.32	606153	ATP5E, MC5DN3	ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit	ATP5F1E	514	ENSG00000124172	pseudogene on 4q25; mutation identified in 1 MC5DN3 patient	?Mitochondrial complex V (ATP synthase) deficiency, nuclear type 3, 614053 (3)	
chr20	59300414	59325991	20q13.2-q13.3	20q13.32	131242	EDN3, WS4B, HSCR4	Endothelin-3	EDN3	1908	ENSG00000124205		Central hypoventilation syndrome, congenital, 209880 (3), Autosomal dominant; {Hirschsprung disease, susceptibility to, 4}, 613712 (3), Autosomal dominant; Waardenburg syndrome, type 4B, 613265 (3), Autosomal recessive, Autosomal dominant	Edn3 (MGI:95285)
chr20	59577496	59849828	20q13.32	20q13.32-q13.33	608725	PHACTR3, SCAPININ	Phosphatase and actin regulator 3	PHACTR3	116154	ENSG00000087495			Phactr3 (MGI:1921439)
chr20	59700000	64444167	20q13.33		613031	GLM6	Glioma susceptibility 6		100415895		associated with rs6010620	{Glioma susceptibility 6}, 613031 (2)	
chr20	59863276	59933699	20q13.33	20q13.33	604105	SYCP2, SCP2	Synaptonemal complex protein 2	SYCP2	10388	ENSG00000196074			Sycp2 (MGI:1933281)
chr20	59936831	59940296	20q13.3	20q13.33	603326	PPP1R3D, PPP1R6	Protein phosphatase 1, regulatory subunit 3D	PPP1R3D	5509	ENSG00000132825			Ppp1r3d (MGI:1917664)
chr20	59957763	60037970	20q13.33	20q13.33	617685	CDH26	Cadherin 26	CDH26	60437	ENSG00000124215			Cdh26 (MGI:2685856)
chr20	61252425	61940616	20q13.3	20q13.33	603006	CDH4	Cadherin 4	CDH4	1002	ENSG00000179242			Cdh4 (MGI:99218)
chr20	61974797	62065809	20q13.33	20q13.33	601796	TAF4, TAF2C1, TAFII130, TAF2C	TAF4 RNA polymerase II, TATA box-binding protein-associated factor, 135kD	TAF4	6874	ENSG00000130699			Taf4 (MGI:2152346)
chr20	62136726	62143457	20q13.33	20q13.33	606607	PSMA7	Proteasome subunit, alpha-type, 7	PSMA7	5688	ENSG00000101182			Psma7 (MGI:1347070)
chr20	62143719	62182509	20q13.3	20q13.33	606472	SS18L1, KIAA0693, CREST	SS18-like gene 1	SS18L1	26039	ENSG00000184402			Ss18l1 (MGI:2444061)
chr20	62182745	62203567	20q13.33	20q13.33	610919	GTPBP5, OBGH1	GTP-binding protein 5	MTG2	26164	ENSG00000101181			Mtg2 (MGI:106565)
chr20	62213844	62220266	20q13.33	20q13.33	604525	HRH3, GPCR97	Histamine receptor H3	HRH3	11255	ENSG00000101180			Hrh3 (MGI:2139279)
chr20	62238484	62296212	20q	20q13.33	606731	OSBPL2, ORP2, KIAA0772, DNFA67	Oxysterol-binding protein-like protein 2	OSBPL2	9885	ENSG00000130703		Deafness, autosomal dominant 67, 616340 (3), Autosomal dominant	Osbpl2 (MGI:2442832)
chr20	62302060	62308861	20q13.33	20q13.33	610650	ADRM1, ARM1, RPN13	Adhesion-regulating molecule 1	ADRM1	11047	ENSG00000130706			Adrm1 (MGI:1929289)
chr20	62309059	62367317	20q13.2-q13.3	20q13.33	601033	LAMA5	Laminin, alpha-5	LAMA5	3911	ENSG00000130702			Lama5 (MGI:105382)
chr20	62386274	62388519	20q13.3	20q13.33	180477	RPS21	Ribosomal protein S21	RPS21	6227	ENSG00000171858			Rps21 (MGI:1913731)
chr20	62463496	62475969	20q13.2-q13.3	20q13.33	611496	GATA5, CHTD5	GATA-binding protein 5	GATA5	140628	ENSG00000130700		Congenital heart defects, multiple types, 5, 617912 (3), Autosomal recessive, Autosomal dominant	Gata5 (MGI:109497)
chr20	62554305	62554375	20q13.33	20q13.33	609326	MIR1-1	Micro RNA 1-1	MIR1-1	406904				
chr20	62564911	62565012	20q13.33	20q13.33	610255	MIR133A2	Micro RNA 133A2	MIR133A2	406923				
chr20	62642057	62690721	20q13.33	20q13.33	612436	SLCO4A1, OATPE, OATP4A1	Solute carrier organic anion transporter family, member 4A1	SLCO4A1	28231	ENSG00000101187			Slco4a1 (MGI:1351866)
chr20	62708769	62762770	20q13	20q13.33	162651	NTSR1	Neurotensin receptor	NTSR1	4923	ENSG00000101188			Ntsr1 (MGI:97386)
chr20	62796404	62801737	20q13.33	20q13.33	611157	MRGBP, C20orf20	MRG/MORF4L-binding protein	MRGBP	55257	ENSG00000101189			Mrgbp (MGI:1920497)
chr20	62817061	62841158	20q13.3	20q13.33	120270	COL9A3, EDM3, IDD	Collagen IX, alpha-3 polypeptide	COL9A3	1299	ENSG00000092758		Epiphyseal dysplasia, multiple, 3, with or without myopathy, 600969 (3), Autosomal dominant; {Intervertebral disc disease, susceptibility to}, 603932 (3)	Col9a3 (MGI:894686)
chr20	62877737	62937951	20q13.33	20q13.33	604140	DATF1, DIO1	Death-associated transcription factor 1	DIDO1	11083	ENSG00000101191			Dido1 (MGI:1344352)
chr20	62938088	62948474	20q13.33	20q13.33	611625	GID8, C20orf11, TWA1	GID complex, subunit 8	GID8	54994	ENSG00000101193			Gid8 (MGI:1923675)
chr20	62952646	62968596	20q13.3	20q13.33	612107	SLC17A9, C20orf59, POROK8	Solute carrier family 17, member 9	SLC17A9	63910	ENSG00000101194		Porokeratosis 8, disseminated superficial actinic type, 616063 (3), Autosomal dominant	Slc17a9 (MGI:1919107)
chr20	63005978	63007034	20q13	20q13.33	609331	BHLHE23, BHLHB4	Basic helix-loop-helix family, member E23	BHLHE23	128408	ENSG00000125533			Bhlhe23 (MGI:2153710)
chr20	63095492	63102318	20q13.33	20q13.33	610557	HAR1B, HAR1R	Highly accelerated region gene 1B	HAR1B	768097				
chr20	63101291	63104385	20q13.33	20q13.33	610556	HAR1A, HAR1F	Highly accelerated region gene 1A	HAR1A	768096				
chr20	63195428	63216185	20q13.33	20q13.33	616529	YTHDF1	YTH N6-methyladenosine RNA-binding protein 1	YTHDF1	54915	ENSG00000149658			Ythdf1 (MGI:1917431)
chr20	63235882	63240506	20q13.3	20q13.33	605737	BIRC7, MLIAP, KIAP, LIVIN	Baculoviral IAP repeat-containing protein 7	BIRC7	79444	ENSG00000101197			Birc7 (MGI:2676458)
chr20	63240779	63256405	20q13.33	20q13.33	612873	NKAIN4	Na+/K+ transporting ATPase-interacting 4	NKAIN4	128414	ENSG00000101198			Nkain4 (MGI:1915372)
chr20	63272784	63289792	20q13.33	20q13.33	608377	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	ARFGAP1	55738	ENSG00000101199			Arfgap1 (MGI:2183559)
chr20	63343309	63375470	20q13.2-q13.3	20q13.33	118504	CHRNA4, ENFL1	Cholinergic receptor, nicotinic, alpha polypeptide-4	CHRNA4	1137	ENSG00000101204		Epilepsy, nocturnal frontal lobe, 1, 600513 (3), Autosomal dominant; {Nicotine addiction, susceptibility to}, 188890 (3)	Chrna4 (MGI:87888)
chr20	63400207	63472676	20q13.3	20q13.33	602235	KCNQ2, EBN1, EIEE7, BFNS1	Potassium voltage-gated channel, KQT-like subfamily, member 2	KCNQ2	3785	ENSG00000075043		Epileptic encephalopathy, early infantile, 7, 613720 (3), Autosomal dominant; Myokymia, 121200 (3), Autosomal dominant; Seizures, benign neonatal, 1, 121200 (3), Autosomal dominant	Kcnq2 (MGI:1309503)
chr20	63488011	63499314	20q13	20q13.33	602959	EEF1A2, EIEE33, MRD38	Eukaryotic translation elongation factor-1, alpha-2	EEF1A2	1917	ENSG00000101210		Epileptic encephalopathy, early infantile, 33, 616409 (3), Autosomal dominant; Mental retardation, autosomal dominant 38, 616393 (3), Autosomal dominant	Eef1a2 (MGI:1096317)
chr20	63528412	63537369	20q13.3	20q13.33	602004	PTK6, BRK	Protein-tyrosine kinase 6	PTK6	5753	ENSG00000101213			Ptk6 (MGI:99683)
chr20	63539923	63547503	20q13.33	20q13.33	617797	SRMS, C20orf148	Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites	SRMS	6725	ENSG00000125508			Srms (MGI:101865)
chr20	63558085	63574238	20q13.3	20q13.33	611265	PRIC285, PDIP1, KIAA1769	Peroxisomal proliferator-activated receptor alpha-interacting cofactor complex, 285kD subunit	HELZ2	85441	ENSG00000130589			Helz2 (MGI:2385169)
chr20	63587593	63627100	20q13.33	20q13.33	607451	GMEB2, KIAA1269	Glucocorticoid modulatory element-binding protein 2	GMEB2	26205	ENSG00000101216			Gmeb2 (MGI:2652836)
chr20	63639704	63653609	20q13.3	20q13.33	608362	STMN3, SCLIP	Stathmin-like 3	STMN3	50861	ENSG00000197457			Stmn3 (MGI:1277137)
chr20	63657809	63696252	20q13.3	20q13.33	608833	RTEL1, C20orf41, NHL, KIAA1088, DKCB5, DKCA4, PFBMFT3	Regulator of telomere elongation helicase 1	RTEL1	51750	ENSG00000258366		Dyskeratosis congenita, autosomal dominant 4, 615190 (3), Autosomal recessive, Autosomal dominant; Dyskeratosis congenita, autosomal recessive 5, 615190 (3), Autosomal recessive, Autosomal dominant; Pulmonary fibrosis and/or bone marrow failure, telomere-related, 3, 616373 (3), Autosomal dominant	Rtel1 (MGI:2139369)
chr20	63696650	63698697	20q13	20q13.33	603361	TNFRSF6B, DCR3	Tumor necrosis factor receptor superfamily, member 6b (decoy receptor 3)	TNFRSF6B	8771	ENSG00000243509			
chr20	63698641	63708012	20q13.33	20q13.33	604699	ARFRP1, ARP	ADP-ribosylation factor-related protein 1	ARFRP1	10139	ENSG00000101246			Arfrp1 (MGI:1923938)
chr20	63735700	63739106	20q13.3	20q13.33	609809	LIME1, LIME	LCK-interacting transmembrane adaptor 1	LIME1	54923	ENSG00000203896			Lime1 (MGI:1919949)
chr20	63743667	63832331	20q13.33	20q13.33	614639	ZBTB46, BZEL	Zinc finger- and BTB domain-containing protein 46	ZBTB46	140685	ENSG00000130584			Zbtb46 (MGI:1919397)
chr20	63865227	63891544	20q13.2-q13.3	20q13.33	603747	TPD52L2	Tumor protein D52-like 2	TPD52L2	7165	ENSG00000101150			Tpd52l2 (MGI:1913564)
chr20	63895101	63936030	20q13.33	20q13.33	611203	DNAJC5, DNAJC5A, CSP, CLN4B	DNAJ/HSP40 homolog, subfamily C, member 5	DNAJC5	80331	ENSG00000101152		Ceroid lipofuscinosis, neuronal, 4, Parry type, 162350 (3), Autosomal dominant	Dnajc5 (MGI:892995)
chr20	63939828	63956446	20q13.33	20q13.33	610866	UCKL1, UCK1L, URKL1	Uridine/cytidine kinase-like 1	UCKL1	54963	ENSG00000198276			Uckl1 (MGI:1915806)
chr20	63956702	63969869	20q13.33	20q13.33	617886	ZNF512B, KIAA1196	Zinc finger protein 512B	ZNF512B	57473	ENSG00000196700			Zfp512b (MGI:2685478)
chr20	63981077	64033099	20q13.33	20q13.33	613979	PRPF6, PRP6, ANT1, TOM, C20orf14	Precursor mRNA-processing factor 6, S. cerevisiae, homolog of	PRPF6	24148	ENSG00000101161		Retinitis pigmentosa 60, 613983 (3), Autosomal dominant	Prpf6 (MGI:1922946)
chr20	64047725	64049625	20q13.33	20q13.33	601618	SOX18, HLTS, HLTRS	SOX18, mouse, homolog of	SOX18	54345	ENSG00000203883		Hypotrichosis-lymphedema-telangiectasia syndrome, 607823 (3), Autosomal recessive; Hypotrichosis-lymphedema-telangiectasia-renal defect syndrome, 137940 (3), Autosomal dominant	Sox18 (MGI:103559)
chr20	64073180	64080003	20q13.3	20q13.33	605071	RGS19, GAIP	Regulator of G protein signaling 19	RGS19	10287	ENSG00000171700			Rgs19 (MGI:1915153)
chr20	64080081	64100642	20q13.33	20q13.33	602548	OPRL1, NOP	Opioid receptor-like 1	OPRL1	4987	ENSG00000125510			Oprl1 (MGI:97440)
chr20	64105829	64106830	20q13.3	20q13.33	600731	GPR8	G protein-coupled receptor-8	NPBWR2	2832	ENSG00000125522	related sequence on 14		
chr20	64164473	64242252	20q13.3	20q13.33	600379	MYT1, PLPB1	Myelin transcription factor 1	MYT1	4661	ENSG00000196132			Myt1 (MGI:1100535)
chr20	0	64444167	Chr.20		151310	HTL, LEUT, HLT	Leucine transport, high	HTL	3343				
chr21	0	15000000	21p13-q11		610838	AUTS12	Autism, susceptibility to, 12		100188314		max lod at D21S1437	{Autism susceptibility 12}, 610838 (2)	
chr21	3100000	7000000	21p12		180453	RNR4	Ribosomal RNA-4	RNR4	6055				
chr21	7000000	10900000	21p11.2		605167	BAGE1, BAGE	BAGE family, member 1	BAGE	574		previously assigned to chr.13		
chr21	7000000	10900000	21p11.2		617777	BAGE3	BAGE family, member 3	BAGE3	85318				
chr21	10413531	10491614	21p11.2	21p11.2	617776	BAGE2	BAGE family, member 2	BAGE2	85319				
chr21	10521513	10606269	21p	21p11.2	604336	TPTE	Transmembrane phosphatase with tensin homology	TPTE	7179	ENSG00000274391			
chr21	13000000	15000000	21q11.2		609039	NRCLP3	Narcolepsy 3		494446		max lod at D21S1245	Narcolepsy 3, 609039 (2), Autosomal dominant	
chr21	13000000	15000000	21q11.2		617937	RBM11	RNA-binding motif protein 11						
chr21	13000000	15000000	21q11.2		159595	TAM, MST	Myeloproliferative syndrome, transient (transient abnormal myelopoiesis)		8205			Leukemia, transient, of Down syndrome, 159595 (2)	
chr21	13610080	13641584	21q11.2	21q11.2	607549	POTED, ANKRD21, POTE	POTE ankyrin domain family, member D	POTED	317754	ENSG00000166351			
chr21	14108812	14210952	21q11.2	21q11.2	609252	LIPI, LPDL, PRED5	Lipase I	LIPI	149998	ENSG00000188992		{Hypertriglyceridemia, susceptibility to}, 145750 (3), Autosomal dominant	Lipi (MGI:2443868)
chr21	14273798	14301385	21q11.2	21q11.2	608835	ABCC13	ATP-binding cassette, subfamily C, member 13	ABCC13	150000				
chr21	14371114	14383187	21q11.1	21q11.2	601100	STCH	Stress 70 protein chaperone, microsome-associated, p60	HSPA13	6782	ENSG00000155304			Hspa13 (MGI:1309463)
chr21	14485227	14583401	21q11.2	21q11.2	607978	SAMSN1, HACS1	SAM domain, SH3 domain, and nuclear localization signals 1	SAMSN1	64092	ENSG00000155307			Samsn1 (MGI:1914992)
chr21	14961234	15065902	21q11	21q11.2-q21.1	602490	NRIP1, RIP140	Nuclear receptor interacting protein 1 (receptor interacting protein 140)	NRIP1	8204	ENSG00000180530			Nrip1 (MGI:1315213)
chr21	15000000	30200000	21q21		602097	USH1E	Usher syndrome-1E, autosomal recessive, severe	USH1E	7396			Usher syndrome, type 1E, 602097 (2), Autosomal recessive	
chr21	16070487	16631726	21q21.1	21q21.1	615964	MIR99AHG, MONC, LINC00478	MIR99A-LET7C cluster host gene, noncoding	MIR99AHG	388815				
chr21	16539088	16539168	21q21.1	21q21.1	614509	MIR99A	Micro RNA 99A	MIR99A	407055				
chr21	16539827	16539910	21q21.1	21q21.1	612144	MIRLET7C, MIRNLET7C, LET7C	Micro RNA Let7c	MIRLET7C	406885				
chr21	16590236	16590324	21q21.1	21q21.1	610105	MIR125B2, MIRN125B2	Micro RNA 125B-2	MIR125B2	406912				
chr21	17512905	17636212	21q11.2	21q21.1	602621	CXADR, CAR	Coxsackie virus and adenovirus receptor	CXADR	1525	ENSG00000154639	pseudogenes on chr.15 and chr.18		Cxadr (MGI:1201679)
chr21	17593649	17612949	21q11.2-q21.1	21q21.1	605674	BTG3, ANA, TOB5	B-cell translocation gene 3	BTG3	10950	ENSG00000154640			Btg3 (MGI:109532)
chr21	17819328	18267370	21q21	21q21.1	607247	CHODL	Chondrolectin	CHODL	140578	ENSG00000154645			Chodl (MGI:2179069)
chr21	18269106	18403805	21q21	21q21.1	606635	PRSS7, ENTK	Protease, serine, 7 (enterokinase)	TMPRSS15	5651	ENSG00000154646		Enterokinase deficiency, 226200 (3), Autosomal recessive	Tmprss15 (MGI:1197523)
chr21	20998295	21543328	21q21	21q21.1	602040	NCAM2	Cell adhesion molecule, neural, 2	NCAM2	4685	ENSG00000154654			Ncam2 (MGI:97282)
chr21	25573979	25574043	21q21.3	21q21.3	609337	MIR155, BIC, MIRN155	Micro RNA 155	MIR155	406947				
chr21	25585655	25607857	21q11.2-q21	21q21.3	611845	MRPL39, MRPL5	Mitochondrial ribosomal protein L39	MRPL39	54148	ENSG00000154719			Mrpl39 (MGI:1351620)
chr21	25607549	25717561	21q21.2	21q21.3	606870	JAM2, VEJAM	Junctional adhesion molecule 2	JAM2	58494	ENSG00000154721			Jam2 (MGI:1933820)
chr21	25724479	25735653	21q21.3	21q21.3	603152	ATP5J, ATP5	ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F6	ATP5PF	522	ENSG00000154723			Atp5j (MGI:107777)
chr21	25734946	25772459	21q21-q22.1	21q21.3	600609	GABPA, E4TF1A	GA-binding protein transcription factor, alpha subunit, 60kD	GABPA	2551	ENSG00000154727			Gabpa (MGI:95610)
chr21	25880549	26171127	21q21	21q21.3	104760	APP, AAA, CVAP, AD1	Amyloid beta (A4) precursor protein	APP	351	ENSG00000142192	proximal to SOD; very distal q21 or boundary with q22	Alzheimer disease 1, familial, 104300 (3), Autosomal dominant; Cerebral amyloid angiopathy, Dutch, Italian, Iowa, Flemish, Arctic variants, 605714 (3), Autosomal dominant	App (MGI:88059)
chr21	26393634	26569251	21q21.3	21q21.3	616021	CYYR1AS1, CYYR1-AS1	CYRR1 antisense RNA 1	CYYR1-AS1	100996571				
chr21	26466208	26573403	21q21.3	21q21.3	616020	CYYR1	Cysteine/tyrosine-rich protein 1	CYYR1	116159	ENSG00000166265			Cyyr1 (MGI:2152187)
chr21	26836286	26845408	21q21.2	21q21.3	605174	ADAMTS1, METH1	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 1	ADAMTS1	9510	ENSG00000154734			Adamts1 (MGI:109249)
chr21	26917911	26967757	21q21-q22	21q21.3	605007	ADAMTS5, ADAMTS11	A disintegrin-like and metalloproteinase with thrombospondin type 1 motif, 5 (aggrecanase 2)	ADAMTS5	11096	ENSG00000154736			Adamts5 (MGI:1346321)
chr21	28439660	28885372	21q21.3	21q21.3	614553	N6AMT1	N6 adenine-specific DNA methyltransferase 1, putative	N6AMT1	29104	ENSG00000156239			N6amt1 (MGI:1915018)
chr21	28928143	28992987	21q22.11	21q21.3	613083	LTN1, RNF160, KIAA0714	Listerin E3 ubiquitin protein ligase 1	LTN1	26046	ENSG00000198862			Ltn1 (MGI:1926163)
chr21	29005758	29019370	21q22.1	21q21.3	617843	RWDD2B, C21orf6	RWD domain-containing protein 2B	RWDD2B	10069	ENSG00000156253			Rwdd2b (MGI:1858215)
chr21	29024616	29054487	21q21.3	21q21.3	604735	USP16, UBPM	Ubiquitin-specific protease 16	USP16	10600	ENSG00000156256			Usp16 (MGI:1921362)
chr21	29056321	29073796	21q21.3	21q21.3	617786	CCT8, KIAA0002	Chaperonin containing T-complex polypeptide 1, subunit 8	CCT8	10694	ENSG00000156261			Cct8 (MGI:107183)
chr21	29077470	29175888	21q21	21q21.3	611110	TAK1L, C21orf7	TAK1-like	MAP3K7CL	56911	ENSG00000156265			
chr21	29298794	29361895	21q22.1	21q21.3	602751	BACH1	BTB and CNC homology 1	BACH1	571	ENSG00000156273			Bach1 (MGI:894680)
chr21	29536932	29940051	21q22	21q21.3	138245	GRIK1, GLUR5	Glutamate receptor, ionotropic, kainate 1	GRIK1	2897	ENSG00000171189			Grik1 (MGI:95814)
chr21	30165922	30166652	21q21.3	21q21.3	617005	CLDN17	Claudin 17	CLDN17	26285	ENSG00000156282			Cldn17 (MGI:2652030)
chr21	30200000	46709983	21q22		611515	FEB7	Febrile seizures, familial, 7	FEB7	100049160		max lod at D21S1910	Febrile seizures, familial, 7, 611515 (2)	
chr21	30200000	46709983	21q22		609428	TUKLS	Tukel syndrome		574049		max lod at D21S1259	Tukel syndrome, 609428 (2), Autosomal recessive	
chr21	30214005	30216150	21q22.11	21q22.11	611231	CLDN8	Claudin 8	CLDN8	9073	ENSG00000156284			Cldn8 (MGI:1859286)
chr21	30396073	30396821	21q22.11	21q22.11	608718	KRTAP13-1	Keratin-associated protein 13-1	KRTAP13-1	140258	ENSG00000198390			Krtap13-1 (MGI:2146359)
chr21	30880643	30881554	21q22.11	21q22.11	600064	KRTAP11-1, HACL1	Keratin-associated protein 11-1	KRTAP11-1	337880	ENSG00000182591			Krtap11-1 (MGI:99447)
chr21	31118417	31559976	21q22.1	21q22.11	600687	TIAM1	T-cell lymphoma invasion and metastasis 1	TIAM1	7074	ENSG00000156299			Tiam1 (MGI:103306)
chr21	31659621	31668930	21q22.1	21q22.11	147450	SOD1, ALS1	Superoxide dismutase-1, soluble	SOD1	6647	ENSG00000142168	mid q22.1	Amyotrophic lateral sclerosis 1, 105400 (3), Autosomal recessive, Autosomal dominant	Sod1 (MGI:98351)
chr21	31668986	31732117	21q22.11	21q22.11	616023	SCAF4, KIAA1172	SR-related C-terminal domain-associated factor 4	SCAF4	57466	ENSG00000156304			Scaf4 (MGI:2146350)
chr21	31873314	32004063	21q22	21q22.11	606532	HUNK	Hormonally upregulated NEU-associated kinase	HUNK	30811	ENSG00000142149			Hunk (MGI:1347352)
chr21	32291812	32314783	21q22.1	21q22.11	609196	MRAP, FALP, C21orf61, GCCD2, FGD2	Melanocortin 2 receptor accessory protein	MRAP	56246	ENSG00000170262		Glucocorticoid deficiency 2, 607398 (3), Autosomal recessive	Mrap (MGI:1924287)
chr21	32311018	32393002	21q22.1	21q22.11	608865	URB1, NPA1, C21orf108, KIAA0539	URB1 ribosome biogenesis 1 homolog (S. cerevisiae)	URB1	9875	ENSG00000142207			Urb1 (MGI:2146468)
chr21	32574840	32585544	21q22.1	21q22.11	608365	TCP10L	T-complex protein 10-like	TCP10L	140290	ENSG00000242220			
chr21	32599353	32612870	21q22.11	21q22.11	615494	C21orf59, CILD26	Chromosome 21 open reading frame 59	CFAP298	56683	ENSG00000159079		Ciliary dyskinesia, primary, 26, 615500 (3), Autosomal recessive	1110004E09Rik (MGI:1915251)
chr21	32628758	32731246	21q22.2	21q22.11	604297	SYNJ1, PARK20, EIEE53	Synaptojanin 1	SYNJ1	8867	ENSG00000159082		Epileptic encephalopathy, early infantile, 53, 617389 (3), Autosomal recessive; Parkinson disease 20, early-onset, 615530 (3), Autosomal recessive	Synj1 (MGI:1354961)
chr21	32733898	32771857	21q22.11	21q22.11	617621	PAXBP1, GCFC1, C21orf66	PAX3- and PAX7-binding protein 1	PAXBP1	94104	ENSG00000159086			Paxbp1 (MGI:1914617)
chr21	33025907	33029195	21q22.11	21q22.11	606386	OLIG2, PRKCBP2	Oligodendrocyte lineage transcription factor 2	OLIG2	10215	ENSG00000205927			Olig2 (MGI:1355331)
chr21	33070143	33072421	21q22.11	21q22.11	606385	OLIG1	Oligodendrocyte lineage transcription factor 1	OLIG1	116448	ENSG00000184221			Olig1 (MGI:1355334)
chr21	33229894	33264512	21q22.1	21q22.11	602376	IFNAR2, IMD45	Interferon, alpha, beta, and omega, receptor 2	IFNAR2	3455	ENSG00000159110	mutation identified in 1 IMD45 family	{Hepatitis B virus, susceptibility to}, 610424 (3); ?Immunodeficiency 45, 616669 (3), Autosomal recessive	Ifnar2 (MGI:1098243)
chr21	33266359	33297233	21q22.1	21q22.11	123889	CRFB4, IBD25	Cytokine receptor, family II, member 4	IL10RB	3588	ENSG00000243646	35kb distal to IFNAR; D21S58	{Hepatitis B virus, susceptibility to}, 610424 (3); Inflammatory bowel disease 25, early onset, autosomal recessive, 612567 (3), Autosomal recessive	Il10rb (MGI:109380)
chr21	33324442	33360360	21q22.1	21q22.11	107450	IFNAR1	Interferon, alpha, beta and omega, receptor 1	IFNAR1	3454	ENSG00000142166			Ifnar1 (MGI:107658)
chr21	33402895	33437520	21q22.1-q22.2	21q22.11	147569	IFNGR2, IFNGT1, IFGR2, IMD28	Interferon gamma receptor-2 (interferon gamma transducer 1)	IFNGR2	3460	ENSG00000159128		Immunodeficiency 28, mycobacteriosis, 614889 (3), Autosomal recessive	Ifngr2 (MGI:107654)
chr21	33432485	33480008	21q22.11	21q22.11	617894	TMEM50B, C21orf4	Transmembrane protein 50B	TMEM50B	757	ENSG00000142188			Tmem50b (MGI:1925225)
chr21	33503930	33542891	21q22.1	21q22.11	138440	GART, PRGS, PGFT	Phosphoribosylglycinamide formyltransferase (phosphoribosylglycinamide synthetase; phosphoribosylaminoimidazole synthetase)	GART	2618	ENSG00000159131	multifunctional protein: Ade(-)C, Ade(-)G, GART		Gart (MGI:95654)
chr21	33543037	33577513	21q22.1-q22.2	21q22.11	182465	SON, TOKIMS	SON DNA-binding protein	SON	6651	ENSG00000159140		ZTTK syndrome, 617140 (3), Autosomal dominant	Son (MGI:98353)
chr21	33577550	33588707	21q22.1	21q22.11	611428	DONSON, C21orf60, MISSLA, MIMIS	Downstream neighbor of SON	DONSON	29980	ENSG00000159147		Microcephaly, short stature, and limb abnormalities, 617604 (3), Autosomal recessive; Microcephaly-micromelia syndrome, 251230 (3), Autosomal recessive	Donson (MGI:1890621)
chr21	33589340	33641853	21q22.1	21q22.11	603920	CRYZL1	Crystallin, zeta-like 1	CRYZL1	9946	ENSG00000205758			Cryzl1 (MGI:1913859)
chr21	33642399	33899860	21q22.1-q22.2	21q22.11	602442	ITSN1, SH3D1A, SH3P17	Intersectin 1 (SH3 domain protein-1A)	ITSN1	6453	ENSG00000205726			Itsn1 (MGI:1338069)
chr21	33903452	33915853	21q22.1-q22.2	21q22.11	600828	ATP5O	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit (oligomycin sensitivity conferring protein)	ATP5PO	539	ENSG00000241837			Atp5o (MGI:106341)
chr21	34073522	34143033	21q21.3-q22.1	21q22.11	611973	MRPS6	Mitochondrial ribosomal protein S6	MRPS6	64968	ENSG00000243927			Mrps6 (MGI:2153111)
chr21	34073522	34106261	21q22	21q22.11	600444	SLC5A3	Solute carrier family 5 (inositol transporter), member 3	SLC5A3	6526	ENSG00000198743	?role in Down syndrome		Slc5a3 (MGI:1858226)
chr21	34364023	34371140	21q22.1	21q22.11	603796	KCNE2, MIRP1, LQT6, ATFB4	Potassium voltage-gated channel, Isk-related family, member 2	KCNE2	9992	ENSG00000159197		Atrial fibrillation, familial, 4, 611493 (3); Long QT syndrome 6, 613693 (3), Autosomal dominant	Kcne2 (MGI:1891123)
chr21	34446687	34512274	21q22.1-q22.2	21q22.12	176261	KCNE1, JLNS, LQT5, JLNS2	Potassium voltage-gated channel, Isk-related subfamily, member 1	KCNE1	3753	ENSG00000180509		Jervell and Lange-Nielsen syndrome 2, 612347 (3), Autosomal recessive; Long QT syndrome 5, 613695 (3), Autosomal dominant	
chr21	34516441	34615141	21q22.1-q22.2	21q22.12	602917	RCAN1, DSCR1, MCIP1, CSP1	Regulator of calcineurin 1	RCAN1	1827	ENSG00000159200			Rcan1 (MGI:1890564)
chr21	34668952	34718226	21q22.12	21q22.12	615321	CLIC6, CLIC1L	Chloride intracellular channel 6	CLIC6	54102	ENSG00000159212			Clic6 (MGI:2146607)
chr21	34787800	35049333	21q22.3	21q22.12	151385	RUNX1, CBFA2, AML1	Runt-related transcription factor 1 (aml1 oncogene)	RUNX1	861	ENSG00000159216		Leukemia, acute myeloid, 601626 (3), Autosomal dominant; Platelet disorder, familial, with associated myeloid malignancy, 601399 (3), Autosomal dominant	Runx1 (MGI:99852)
chr21	35720714	35720807	21q22.12	21q22.12	616090	MIR802	Micro RNA 802	MIR802	768219				
chr21	36069923	36073176	21q22.12	21q22.12	114830	CBR1	Carbonyl reductase 1	CBR1	873	ENSG00000159228			Cbr1 (MGI:88284)
chr21	36134900	36146561	21q22.2	21q22.12	603608	CBR3	Carbonyl reductase 3	CBR3	874	ENSG00000159231			Cbr3 (MGI:1309992)
chr21	36156780	36294273	21q22.2	21q22.12	604803	DOPEY2, 21orf5, KIAA0933	Dopey family member 2	DOPEY2	9980	ENSG00000142197			Dopey2 (MGI:1917278)
chr21	36320188	36376645	21q22.12	21q22.12	610078	MORC3, NXP2	MORC family CW-type zinc finger 3	MORC3	23515	ENSG00000159256			Morc3 (MGI:2136841)
chr21	36380144	36416826	21q22.2	21q22.12-q22.13	601245	CAF1A	Chromatin assembly factor I, p60 subunit	CHAF1B	8208	ENSG00000159259			Chaf1b (MGI:1314881)
chr21	36400000	46709983	21q22.13-qter		609876	BMND6	Bone mineral density QTL 6		100188797		max lod at D21S1446	[Bone mineral density QTL 6], 609876 (2)	
chr21	36400000	38300000	21q22.13		609633	MAFD3, BPEO	Major affective disorder 3		100188792		max lod at D21S1252	{Major affective disorder 3, early onset}, 609633 (2)	
chr21	36460620	36576568	21q22.3	21q22.13	605608	CLDN14, DFNB29	Claudin 14	CLDN14	23562	ENSG00000159261		Deafness, autosomal recessive 29, 614035 (3), Autosomal recessive	Cldn14 (MGI:1860425)
chr21	36699116	36750218	21q22.2	21q22.13	600892	SIM2	Single-minded, Drosophila, homolog of, 2	SIM2	6493	ENSG00000159263			Sim2 (MGI:98307)
chr21	36748624	36990393	21q22.1	21q22.13	609018	HLCS, HCS	Holocarboxylase synthetase	HLCS	3141	ENSG00000159267		Holocarboxylase synthetase deficiency, 253270 (3), Autosomal recessive	Hlcs (MGI:894646)
chr21	37006149	37019658	21q22.2	21q22.13	609892	DSCR6, RIPPLY3	Down syndrome critical region gene 6	RIPPLY3	53820	ENSG00000183145			Ripply3 (MGI:2181192)
chr21	37065363	37073157	21q22.1-q22.2	21q22.13	605938	PIGP, DSCR5, EIEE55	Phosphatidylinositol glycan, class P	PIGP	51227	ENSG00000185808	mutation identified one EIEE55 family	?Epileptic encephalopathy, early infantile, 55, 617599 (3), Autosomal recessive	Pigp (MGI:1860433)
chr21	37073183	37203117	21q22.2	21q22.13	602259	TTC3, TPRD	Tetratricopeptide repeat domain 3	TTC3	7267	ENSG00000182670			Ttc3 (MGI:1276539)
chr21	37223419	37268107	21q22.2	21q22.13	605298	DSCR3, DSCRA	Down syndrome critical region gene 3	VPS26C	10311	ENSG00000157538			Dscr3 (MGI:1206040)
chr21	37365572	37515375	21q22.1	21q22.13	600855	DYRK1A, MNBH, MNB, MRD7	Dual specificity tyrosine-(Y)-phosphorylation regulated kinase-1A (\'minibrain\', Drosophila, homolog of)	DYRK1A	1859	ENSG00000157540	?triplicate state responsible for mental defect in Down syndrome	Mental retardation, autosomal dominant 7, 614104 (3), Autosomal dominant	Dyrk1a (MGI:1330299)
chr21	37624222	37916437	21q22.1	21q22.13	600877	KCNJ6, GIRK2, KCNJ7, KPLBS	Potassium inwardly-rectifying channel, subfamily J, member 6	KCNJ6	3763	ENSG00000157542		Keppen-Lubinsky syndrome, 614098 (3), Autosomal dominant	Kcnj6 (MGI:104781)
chr21	38054010	38121359	21q22.2	21q22.13	604829	DSCR4, DSCRB	Down syndrome critical region gene 4	DSCR4	10281				
chr21	38121450	38156510	21q22.2	21q22.13	613396	DSCR8, MMA1	Down syndrome critical region gene 8	DSCR8	84677				
chr21	38229914	38303125	21q22.2	21q22.1-q22.2	602106	KCNJ15	Potassium inwardly-rectifying channel, subfamily J, member 15	KCNJ15	3772	ENSG00000157551			Kcnj15 (MGI:1310000)
chr21	38367260	38661779	21q22.3	21q22.2	165080	ERG	Erythroblastosis virus E26, avian, (v-ets) oncogene related	ERG	2078	ENSG00000157554	fused with EWS in Ewing sarcoma, with FUS in leukemia		Erg (MGI:95415)
chr21	38739020	38773476	21q22.2-q22.3	21q22.2	611723	C21orf24	Chromosome 21 open reading frame 24	LINC00114	400866				
chr21	38805306	38824954	21q22.3	21q22.2	164740	ETS2	Oncogene ETS-2	ETS2	2114	ENSG00000157557	proximal q22.3		Ets2 (MGI:95456)
chr21	39175445	39183513	21q22.3	21q22.2	605296	PSMG1, DSCR2, C21LRP	Proteasome (prosome, macropain) assembly chaperone 1	PSMG1	8624	ENSG00000183527			Psmg1 (MGI:1860263)
chr21	39184175	39321594	21q22.2-q22.3	21q22.2	617824	BRWD1, WRD9, C21orf107	Bromodomain and WD repeat domain-containing protein 1	BRWD1	54014	ENSG00000185658			Brwd1 (MGI:1890651)
chr21	39342314	39349120	21q22.3	21q22.2	163920	HMGN1, HMG14	High-mobility group nucleosomal binding protein 1	HMGN1	3150	ENSG00000205581			Hmgn1 (MGI:96120)
chr21	39380243	39428527	21q22.3	21q22.2	602915	WRB, CHD5	Tryptophan-rich basic protein	WRB	7485	ENSG00000182093			Wrb (MGI:2136882)
chr21	39445864	39515505	21q22.3	21q22.2	602230	SH3GBR	SH3 domain binding glutamic acid-rich protein	SH3BGR	6450	ENSG00000185437			
chr21	39612939	39662888	21q22.3	21q22.2	604066	B3GALT5, GLCT5	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase 5	B3GALT5	10317	ENSG00000183778			B3galt5 (MGI:2136878)
chr21	39632464	39802095	21q22.2	21q22.2	610638	JAM4	Junctional adhesion molecule 4	IGSF5	150084	ENSG00000183067			Igsf5 (MGI:1919308)
chr21	39867420	39929396	21q22.3	21q22.2	601629	PCP4	Purkinje cell protein 4	PCP4	5121	ENSG00000183036			Pcp4 (MGI:97509)
chr21	40010998	40847138	21q22.2-q22.3	21q22.2	602523	DSCAM	Down syndrome cell adhesion molecule	DSCAM	1826	ENSG00000171587			Dscam (MGI:1196281)
chr21	41167800	41282533	21q22.3	21q22.2-q22.3	605668	BACE2, ALP56, DRAP	Beta-site amyloid beta A4 precursor protein-cleaving enzyme 2 (Down syndrome region aspartic protease)	BACE2	25825	ENSG00000182240			Bace2 (MGI:1860440)
chr21	41175230	41185238	21q22.3	21q22.2	613770	PLAC4	Placenta-specific gene 4	PLAC4	191585				
chr21	41200000	46709983	21q22.3		190685	DCR, DSCR	Down syndrome chromosome region				many genes are involved in this phenotype	Down syndrome, 190685 (4), Isolated cases	
chr21	41200000	46709983	21q22.3		236100	HPE1	Holoprosencephaly-1, alobar	HPE1	3244			Holoprosencephaly 1, 236100 (2), Autosomal dominant, Isolated cases	
chr21	41304228	41357726	21q22	21q22.3	608617	FAM3B	Family with sequence similarity 3, member B	FAM3B	54097	ENSG00000183844			Fam3b (MGI:1270150)
chr21	41361943	41408942	21q22.3	21q22.3	147890	MX2	Myxovirus (influenza) resistance-2	MX2	4600	ENSG00000183486			
chr21	41420328	41459213	21q22.3	21q22.3	147150	MX1, MX, IFI78	Myxovirus (influenza) resistance-1 (interferon induced protein p78)	MX1	4599	ENSG00000157601			
chr21	41464550	41508157	21q22.3	21q22.3	602060	TMPRSS2	Transmembrane protease, serine 2	TMPRSS2	7113	ENSG00000184012			Tmprss2 (MGI:1354381)
chr21	41739368	41767088	21q22.3	21q22.3	605706	RIPK4, NKRD3, DIK, PPS2	Receptor-interacting serine-threonine kinase 4	RIPK4	54101	ENSG00000183421		Popliteal pterygium syndrome, Bartsocas-Papas type, 263650 (3), Autosomal recessive	Ripk4 (MGI:1919638)
chr21	41798224	41879481	21q22.3	21q22.3	617692	PRDM15, ZNF298	PR domain-containing protein 15	PRDM15	63977	ENSG00000141956			Prdm15 (MGI:1930121)
chr21	41885109	41953967	21q22.3	21q22.3	617581	C2CD2, TMEM24L, C21orf25	C2 calcium-dependent domain-containing protein 2	C2CD2	25966	ENSG00000157617			C2cd2 (MGI:1891883)
chr21	41986830	42010417	21q22.3	21q22.3	616485	ZBTB21, ZNF295, KIAA1227	Zinc finger- and BTB domain-containing protein 21	ZBTB21	49854	ENSG00000173276			Zbtb21 (MGI:1927240)
chr21	42062958	42142995	21q22.3	21q22.3	613859	UMODL1	Uromodulin-like 1	UMODL1	89766	ENSG00000177398			Umodl1 (MGI:1929785)
chr21	42199688	42304386	21q22.3	21q22.3	603076	ABCG1, ABC8, WHITE1	ATP-binding cassette, subfamily G, member 1 (white, Drosophila, homolog of)	ABCG1	9619	ENSG00000160179			Abcg1 (MGI:107704)
chr21	42311666	42315595	21q22.3	21q22.3	600633	TFF3, ITF	Trefoil factor 3 (intestinal)	TFF3	7033	ENSG00000160180			Tff3 (MGI:104638)
chr21	42346356	42351098	21q22.3	21q22.3	182590	TFF2, SML1	Trefoil factor 2 (spasmolytic protein-1)	TFF2	7032	ENSG00000160181	within 230kb of BCEI		Tff2 (MGI:1306805)
chr21	42362281	42366534	21q22.3	21q22.3	113710	TFF1, BCEI	Trefoil factor 1 (breast cancer, estrogen-inducible sequence expressed in)	TFF1	7031	ENSG00000160182			Tff1 (MGI:88135)
chr21	42371886	42396845	21q22.3	21q22.3	605511	TMPRSS3, ECHOS1, DFNB8, DFNB10	Transmembrane protease, serine 3	TMPRSS3	64699	ENSG00000160183		Deafness, autosomal recessive 8/10, 601072 (3), Autosomal recessive	Tmprss3 (MGI:2155445)
chr21	42403861	42447679	21q22.3	21q22.3	605736	UBASH3A	Ubiquitin-associated and SH3 domain-containing protein A	UBASH3A	53347	ENSG00000160185			Ubash3a (MGI:1926074)
chr21	42472485	42496353	21q22.3	21q22.3	609314	RSPH1, TSGA2, TSA2, CILD24	Radial spoke head 1, Chlamydomonas, homolog of	RSPH1	89765	ENSG00000160188		Ciliary dyskinesia, primary, 24, 615481 (3), Autosomal recessive	Rsph1 (MGI:1194909)
chr21	42499631	42581439	21q22.3	21q22.3	608094	SLC37A1, G3PP	Solute carrier family 37 (glycerol-3-phosphate transporter), member 1	SLC37A1	54020	ENSG00000160190			Slc37a1 (MGI:2446181)
chr21	42653751	42775508	21q22.3	21q22.3	602973	PDE9A, HSPDE9A2	Phosphodiesterase 9A	PDE9A	5152	ENSG00000160191			Pde9a (MGI:1277179)
chr21	42843074	42891694	21q22.3	21q22.3	605924	WDR4	WD repeat-containing protein 4	WDR4	10785	ENSG00000160193			Wdr4 (MGI:1889002)
chr21	42893267	42911395	21q22.3	21q22.3	602184	NDUFV3	NADH-ubiquinone oxidoreductase flavoprotein 3, 10kD	NDUFV3	4731	ENSG00000160194			Ndufv3 (MGI:1890894)
chr21	42974509	43033930	21q22.3	21q22.3	602100	PKNOX1	PBX/knotted 1 homeo box 1	PKNOX1	5316	ENSG00000160199			Pknox1 (MGI:1201409)
chr21	43053189	43076860	21q22.3	21q22.3	613381	CBS	Cystathionine beta-synthase	CBS	875	ENSG00000160200	subtelomeric	Homocystinuria, B6-responsive and nonresponsive types, 236200 (3), Autosomal recessive; Thrombosis, hyperhomocysteinemic, 236200 (3), Autosomal recessive	Cbs (MGI:88285)
chr21	43092955	43108290	21q22.3	21q22.3	191317	U2AF1	U2(RNU2) small nuclear RNA auxillary factor 1	U2AF1	7307	ENSG00000160201			
chr21	43169007	43172809	21q22.3	21q22.3	123580	CRYAA, CRYA1, CTRCT9	Crystallin, alpha A	CRYAA	1409	ENSG00000160202		Cataract 9, multiple types, 604219 (3), Autosomal recessive, Autosomal dominant	Cryaa (MGI:88515)
chr21	43414489	43427131	21q22.3	21q22.3	605705	SIK1, SNF1LK, MSK, EIEE30	Salt-inducible kinase 1	SIK1	150094	ENSG00000142178		Epileptic encephalopathy, early infantile, 30, 616341 (3), Autosomal dominant	
chr21	43453986	43659498	21q22.3	21q22.3	604554	HSF2BP	Heat-shock transcription factor 2-binding protein	HSF2BP	11077	ENSG00000160207			Hsf2bp (MGI:1921627)
chr21	43659550	43696078	21q22	21q22.3	610654	RRP1B, KIAA0179, NNP1L	Ribosomal RNA-processing protein 1, S. cerevisiae, homolog of, B	RRP1B	23076	ENSG00000160208			Rrp1b (MGI:1919712)
chr21	43719096	43762306	21q22.3	21q22.3	179020	PDXK, PNK, PKH	Pyridoxal kinase	PDXK	8566	ENSG00000160209			Pdxk (MGI:1351869)
chr21	43773664	43776374	21q22.3	21q22.3	601145	CSTB, STFB, EPM1, PME, EPM1A, ULD	Cystatin B (stefin B)	CSTB	1476	ENSG00000160213		Epilepsy, progressive myoclonic 1A (Unverricht and Lundborg), 254800 (3), Autosomal recessive	Cstb (MGI:109514)
chr21	43865159	43987593	21q22.3	21q22.3	614794	AGPAT3, LPAAT3	1-acylglycerol-3-phosphate O-acyltransferase 3	AGPAT3	56894	ENSG00000160216			Agpat3 (MGI:1336186)
chr21	44012324	44106551	21q22.3	21q22.3	602103	TMEM1, EHOC1	Transmembrane protein 1	TRAPPC10	7109	ENSG00000160218	near PWP2H		Trappc10 (MGI:1336209)
chr21	44107322	44131180	21q22.3	21q22.3	601475	PWP2H, PWP2	PWP2 periodic tryptophan protein, yeast, homolog of	PWP2	5822	ENSG00000241945			
chr21	44133611	44145722	21q22.3	21q22.3	601659	ES1, HES1, GT335, C21orf33	ES1, zebrafish, protein, homolog of	GATD3A	8209	ENSG00000160221			D10Jhu81e (MGI:1351861)
chr21	44216978	44241003	21q22.3	21q22.3	605717	ICOSLG, B7H2, GL50, B7RP1	Inducible T-cell co-stimulator ligand	ICOSLG	23308	ENSG00000160223			Icosl (MGI:1354701)
chr21	44246338	44262215	21q22.3	21q22.3	606588	DNMT3L	DNA methyltransferase 3-like protein	DNMT3L	29947	ENSG00000142182			Dnmt3l (MGI:1859287)
chr21	44285837	44298218	21q22.3	21q22.3	607358	AIRE, APECED, APS1	Autoimmune regulator	AIRE	326	ENSG00000160224		Autoimmune polyendocrinopathy syndrome , type I, with or without reversible metaphyseal dysplasia, 240300 (3), Autosomal recessive, Autosomal dominant	Aire (MGI:1338803)
chr21	44300033	44327380	21q22.3	21q22.3	171860	PFKL	Phosphofructokinase, liver type	PFKL	5211	ENSG00000141959		Hemolytic anemia due to phosphofructokinase deficiency (1)	Pfkl (MGI:97547)
chr21	44328943	44339416	21q22.3	21q22.3	603191	C21orf2, SMDAX, RDMS	Chromosome 21 open reading frame 2	C21orf2	755	ENSG00000160226		Retinal dystrophy with macular staphyloma, 617547 (3), Autosomal recessive; Spondylometaphyseal dysplasia, axial, 602271 (3), Autosomal recessive	1810043G02Rik (MGI:1915134)
chr21	44350111	44443080	21q22.3	21q22.3	603749	TRPM2, TRPC7, KNP3	Transient receptor potential cation channel, subfamily M, member 2	TRPM2	7226	ENSG00000142185			Trpm2 (MGI:1351901)
chr21	44455485	44462195	21q22.3	21q22.3	617620	LRRC3, C21orf102, C21orf30	Leucine-rich repeat-containing protein 3	LRRC3	81543	ENSG00000160233			Lrrc3 (MGI:2447899)
chr21	44497891	44711579	21q22.3	21q22.3	612920	TSPEAR, C21orf29, DFNB98	Thrombospondin-type laminin G domain and EAR repeats	TSPEAR	54084	ENSG00000175894	mutation identified in 1 DFNB98 family	?Deafness, autosomal recessive 98, 614861 (3), Autosomal recessive	Tspear (MGI:2671932)
chr21	44768579	44801835	21q22.3	21q22.3	603124	UBE2G2, UBC7	Ubiquitin-conjugating enzyme E2G 2	UBE2G2	7327	ENSG00000184787			Ube2g2 (MGI:1343188)
chr21	44805616	44818128	21q22.3	21q22.3	602231	SUMO3, SMT3H1	Small ubiquitin-like modifier 3	SUMO3	6612	ENSG00000184900			Sumo3 (MGI:1336201)
chr21	44849584	44873902	21q22.3	21q22.3	603784	PTTG1IP, C21orf1, C21orf3, PBF	Pituitary tumor-transforming gene 1 protein-interacting protein	PTTG1IP	754	ENSG00000183255			Pttg1ip (MGI:2652132)
chr21	44885948	44928872	21q22.3	21q22.3	600065	ITGB2, CD18, LCAMB, LAD	Integrin, beta-2 (antigen CD18 (p95), lymphocyte function-associated antigen-1; macrophage antigen, beta polypeptide)	ITGB2	3689	ENSG00000160255	common subunit for CR3, LFA1, and P150,95	Leukocyte adhesion deficiency, 116920 (3), Autosomal recessive	Itgb2 (MGI:96611)
chr21	44989863	44994085	21q22.3	21q22.3	610259	LINC00163, NCRNA00163, NLC1A	Long intergenic nonprotein coding RNA 163	LINC00163	727699				
chr21	44999207	45004726	21q22.3	21q22.3	617191	PICSAR, LINC00162, NLC1C	p38-inhibited cutaneous squamous cell carcinoma-associated long intergenic noncoding RNA	PICSAR	378825				
chr21	45074577	45226562	21q22.3	21q22.3	601218	ADARB1, RED1	Adenosine deaminase, RNA-specific, B1 (RED1, rat, homolog of)	ADARB1	104	ENSG00000197381			Adarb1 (MGI:891999)
chr21	45263927	45287913	21q22.3	21q22.3	610249	POFUT2, C21Orf80, KIAA0958	Protein O-fucosyltransferase 2	POFUT2	23275	ENSG00000186866			Pofut2 (MGI:1916863)
chr21	45405136	45513719	21q22.3	21q22.3	120328	COL18A1, KNO1	Collagen XVIII, alpha-1 polypeptide	COL18A1	80781	ENSG00000182871		Knobloch syndrome, type 1, 267750 (3), Autosomal recessive	Col18a1 (MGI:88451)
chr21	45502516	45563139	21q22.3	21q22.3	600424	SLC19A1, FOLT	Solute carrier family 19 (folate transporter), member 1	SLC19A1	6573	ENSG00000173638			Slc19a1 (MGI:103182)
chr21	45643724	45942453	21q22.3	21q22.3	608502	PCBP3	Poly(rC)-binding protein 3	PCBP3	54039	ENSG00000183570			Pcbp3 (MGI:1890470)
chr21	45981748	46005048	21q22.3	21q22.3	120220	COL6A1, BTHLM1, UCHMD1	Collagen VI, alpha-1 polypeptide	COL6A1	1291	ENSG00000142156		Bethlem myopathy 1, 158810 (3), Autosomal recessive, Autosomal dominant; Ullrich congenital muscular dystrophy 1, 254090 (3), Autosomal recessive, Autosomal dominant	Col6a1 (MGI:88459)
chr21	46098070	46132848	21q22.3	21q22.3	120240	COL6A2, BTHLM1, UCMD1	Collagen VI, alpha-2 polypeptide	COL6A2	1292	ENSG00000142173	mutation identified in 1 MYSCL family	Bethlem myopathy 1, 158810 (3), Autosomal recessive, Autosomal dominant; ?Myosclerosis, congenital, 255600 (3), Autosomal recessive; Ullrich congenital muscular dystrophy 1, 254090 (3), Autosomal recessive, Autosomal dominant	Col6a2 (MGI:88460)
chr21	46135980	46156481	21q22.3	21q22.3	606806	FTCD	Formiminotransferase cyclodeminase	FTCD	10841	ENSG00000160282		Glutamate formiminotransferase deficiency, 229100 (3), Autosomal recessive	Ftcd (MGI:1339962)
chr21	46161147	46185162	21q22.3	21q22.3	612412	C21orf56	Chromosome 21 open reading frame 56	SPATC1L	84221	ENSG00000160284			Spatc1l (MGI:1923823)
chr21	46188445	46228823	21q22.3	21q22.3	600909	LSS, OSC, CTRCT44	Lanosterol synthase	LSS	4047	ENSG00000160285		Cataract 44, 616509 (3), Autosomal recessive	Lss (MGI:1336155)
chr21	46235124	46286296	21q22.3	21q22.3	603294	MCM3AP, MAP80, GANP	Minichromosome maintenance 3-associated protein, 80-kD	MCM3AP	8888	ENSG00000160294			Mcm3ap (MGI:1930089)
chr21	46286055	46314187	21q22.3	21q22.3	617461	YBEY, C21orf57	YBEY metallopeptidase	YBEY	54059	ENSG00000182362			Ybey (MGI:2656825)
chr21	46324121	46445768	21q22.3	21q22.3	605925	PCNT, PCNT2, KEN, SCKL4, MOPD2	Pericentrin	PCNT	5116	ENSG00000160299		Microcephalic osteodysplastic primordial dwarfism, type II, 210720 (3), Autosomal recessive	
chr21	46458941	46571225	21q22.3	21q22.3	607711	DIP2, KIAA0184	Disco-interacting protein 2, Drosophila, homolog of	DIP2A	23181	ENSG00000160305	previously mapped to Chr.2		Dip2a (MGI:2385920)
chr21	46598617	46605242	21q22.2-q22.3	21q22.3	176990	S100B	S100 calcium-binding protein, beta (neural)	S100B	6285	ENSG00000160307			S100b (MGI:98217)
chr21	46635155	46665684	21q22.3	21q22.3	601961	HRMT1L1, PRMT2	HMT1 (hnRNP methyltransferase, S. cerevisiae)-like 1	PRMT2	3275	ENSG00000160310			Prmt2 (MGI:1316652)
chr21	0	46709983	Chr.21		109670	BAS	Beta-adrenergic stimulation, response to		8213				
chr21	0	46709983	Chr.21		143460	HTOR	5-hydroxytryptamine oxygenase regulator	HTOR	3349				
chr22	4300000	9400000	22p12		180454	RNR5	Ribosomal RNA-5	RNR5	6056				
chr22	11474776	11479642	22p	22p11.2	194547	ZNF73	Zinc finger protein-73 (Cos12)	ZNF73	105379427				
chr22	15000000	25500000	22q11		125520	ACF	Asymmetric crying facies (Cayler cardiofacial syndrome)		387569			Cayler cardiofacial syndrome, 125520 (2), Autosomal dominant	
chr22	15000000	25500000	22q11		115470	CECR, CES	Cat eye syndrome				partial tetrasomy of 22q11	Cat eye syndrome, 115470 (4), Autosomal dominant	
chr22	15000000	37200000	22q11-q12		151626	LRE1, L1.2	Line-1.2 retrotransposable element						
chr22	15690025	15721630	22q11.1	22q11.1	608913	POTEH, POTE22, ACTBL1	POTE ankyrin domain family, member H	POTEH	23784	ENSG00000198062			
chr22	16195708	16198039	22p	22q11.1	194546	ZNF72	Zinc finger protein-72 (Cos8)	ZNF72P	100287084				
chr22	16783411	16825411	22q11.1	22q11.1	611674	XKR3, XTES, XRG3	X Kell blood group precursor-related family, member 3	XKR3	150165	ENSG00000172967			
chr22	17084958	17115693	22q11.22-q11.23	22q11.1	605461	IL17RA, IL17R, IMD51	Interleukin 17 receptor A	IL17RA	23765	ENSG00000177663		Immunodeficiency 51, 613953 (3), Autosomal recessive	Il17ra (MGI:107399)
chr22	17178789	17221853	22q11.2	22q11.1	607575	CECR1, PAN, SNEDS	Cat eye syndrome chromosome region, candidate 1	ADA2	51816	ENSG00000093072	mutation identified in 1 SNEDS family	Polyarteritis nodosa, childhood-onset, 615688 (3), Autosomal recessive; ?Sneddon syndrome, 182410 (3), Autosomal recessive	
chr22	17359948	17558154	22q11.2	22q11.1-q11.2	607576	CECR2, KIAA1740	Cat eye syndrome chromosome region, candidate 2	CECR2	27443	ENSG00000099954			Cecr2 (MGI:1923799)
chr22	17400000	25500000	22q11.2		611867	DEL22q11.2, C22DELq11.2	Chromosome 22q11.2 deletion syndrome, distal					Chromosome 22q11.2 deletion syndrome, distal, 611867 (4)	
chr22	17400000	25500000	22q11.2		609029	DER22t11-22	Emanuel syndrome (supernumerary der(22)t(11;22) syndrome)					Emanuel syndrome, 609029 (4), Inherited chromosomal imbalance	
chr22	17400000	25500000	22q11.2		613700	DER22t8-22	Supernumerary der(22)t(8;22) syndrome					Supernumerary der(22)t(8-22) syndrome, 613700 (4)	
chr22	17400000	29200000	22q11.21-q12.1		608264	DFNB40	Deafness, autosomal recessive 40	DFNB40	379003			Deafness, autosomal recessive 40, 608264 (2), Autosomal recessive	
chr22	17400000	25500000	22q11.2		608363	DUP22q11.2	Chromosome 22q11.2 microduplication syndrome				contiguous gene microduplication syndrome	Chromosome 22q11.2 microduplication syndrome, 608363 (4), Autosomal dominant, Isolated cases	
chr22	17400000	25500000	22q11.2		600436	GSTT1	Glutathione S-transferase, theta-1	GSTT1	2952				
chr22	17400000	25500000	22q11.2		147230	IGLJ@	Immunoglobulin lambda light chain joining gene cluster		8217		nine J-C duplexes		
chr22	17400000	25500000	22q11.2		147240	IGLV@	Immunoglobulin lambda light chain variable gene cluster		3546		many genes		
chr22	17562469	17592255	22q11.2	22q11.21	609303	SLC25A18, GC2	Solute carrier family 25 (mitochondrial carrier, glutamate), member 18	SLC25A18	83733	ENSG00000182902			Slc25a18 (MGI:1919053)
chr22	17592135	17628821	22q11.2	22q11.21	108746	ATP6V1E1, ATP6E, ARCL2C	ATPase, H+ transporting, lysosomal, 31kD, V1 subunit E isoform 1	ATP6V1E1	529	ENSG00000131100		Cutis laxa, autosomal recessive, type IIC, 617402 (3), Autosomal recessive	Atp6v1e1 (MGI:894326)
chr22	17734139	17774664	22q11.2	22q11.21	601997	BID	BH3-interacting domain death agonist	BID	637	ENSG00000015475			Bid (MGI:108093)
chr22	17787648	18024558	22q11.21	22q11.21	608882	MICAL3, KIAA1364	Microtubule-associated monooxygenase, calponin and LIM domains-containing 3	MICAL3	57553	ENSG00000243156			Mical3 (MGI:2442733)
chr22	17980867	17980960	22q11.21	22q11.21	616205	MIR648	Micro RNA 648	MIR648	693233		in intron 1 of MICAL3		
chr22	18077919	18091030	22q11.21	22q11.21	608666	PEX26, PBD7A, PBD7B	Peroxisome biogenesis factor 26	PEX26	55670	ENSG00000215193		Peroxisome biogenesis disorder 7A (Zellweger), 614872 (3), Autosomal recessive; Peroxisome biogenesis disorder 7B, 614873 (3), Autosomal recessive	Pex26 (MGI:1921293)
chr22	18110686	18131730	22q11	22q11.21	605742	TUBA8, TUBAL2, CDCBM8	Tubulin, alpha 8	TUBA8	51807	ENSG00000183785		Cortical dysplasia, complex, with other brain malformations 8, 613180 (3), Autosomal recessive	Tuba8 (MGI:1858225)
chr22	18149854	18177396	22q11.2	22q11.21	607057	USP18, UBP43, ISG43, PTORCH2	Ubiquitin-specific protease 18	USP18	11274	ENSG00000184979		Pseudo-TORCH syndrome 2, 617397 (3), Autosomal recessive	Usp18 (MGI:1344364)
chr22	18516334	18518164	22q11.2	22q11.21	612340	GGTLC3	Gamma-glutamyltransferase, light chain 3	GGTLC3	728226	ENSG00000274252			
chr22	18606123	18611918	22q11.21	22q11.21	612699	RIMBP3, RIMBP3A, KIAA1666	RIMS-binding protein 3	RIMBP3	85376	ENSG00000275793			Rimbp3 (MGI:2685449)
chr22	18906222	18912087	22q11	22q11.21	601279	DGCR6	DiGeorge syndrome critical region 6	DGCR6	8214	ENSG00000183628			
chr22	18912773	18936552	22q11.2	22q11.21	606810	PRODH, PRODH2, SCZD4	Proline dehydrogenase (proline oxidase)	PRODH	5625	ENSG00000100033		Hyperprolinemia, type I, 239500 (3), Autosomal recessive; {Schizophrenia, susceptibility to, 4}, 600850 (3), Autosomal dominant	Prodh (MGI:97770)
chr22	19036281	19122453	22q11.2	22q11.21	600594	DGCR2, IDD	DiGeorge critical region gene 2 (integral membrane protein deleted in DiGeorge syndrome)	DGCR2	9993	ENSG00000070413			Dgcr2 (MGI:892866)
chr22	19130278	19144725	22q11.2	22q11.21	601755	ESS2, DGSI, DGCR14	Ess2 splicing factor, Xenopus, homolog of	ESS2	8220	ENSG00000100056			Dgcr14 (MGI:107854)
chr22	19130807	19132622	22q11.21	22q11.21	610710	TSSK2, STK22B	Testis-specific serine/threonine kinase 2	TSSK2	23617	ENSG00000206203			Tssk2 (MGI:1347559)
chr22	19148990	19150282	22q11.21	22q11.21	601845	GSC2, GSCL	Goosecoid homeobox 2	GSC2	2928	ENSG00000063515			Gsc2 (MGI:892006)
chr22	19175574	19178862	22q11	22q11.21	190315	SLC25A1, SLC20A3, CTP, D2L2AD	Solute carrier family 25 (mitochondrial citrate transporter), member 1	SLC25A1	6576	ENSG00000100075		Combined D-2- and L-2-hydroxyglutaric aciduria, 615182 (3), Autosomal recessive	
chr22	19179472	19291715	22q11.2	22q11.21	601273	CLTCL1, CLTD	Clathrin, heavy polypeptide-like 1	CLTCL1	8218	ENSG00000070371			
chr22	19253120	19253468	22q11	22q11.21	601225	DVL, DVL1	Dishevelled, Drosophila, homolog-like	DVL1P1	8215				
chr22	19330700	19431695	22q11	22q11.21	600237	HIRA, TUPLE1	Histone cell cycle regulation defective, S. cerevisiae, homolog of, A (Tup-like enhancer of split 1)	HIRA	7290	ENSG00000100084	?role in CATCH22		Hira (MGI:99430)
chr22	19431901	19436077	22q11.21	22q11.21	605089	MRPL40, NLVCF, MRPL22	Mitochondrial ribosomal protein L40	MRPL40	64976	ENSG00000185608			Mrpl40 (MGI:1332635)
chr22	19449940	19479214	22q11.2	22q11.21	601754	UFD1L	Ubiquitin fusion degradation 1-like	UFD1	7353	ENSG00000070010	?role in CATCH22		Ufd1 (MGI:109353)
chr22	19479293	19520611	22q11.2	22q11.21	603465	CDC45L, CDC45L2, MGORS7	Cell division cycle 45, S. Cerevisiae, homolog-like	CDC45	8318	ENSG00000093009		Meier-Gorlin syndrome 7, 617063 (3), Autosomal recessive	Cdc45 (MGI:1338073)
chr22	19523023	19527544	22q11.2	22q11.21	602101	CLDN5, TMVCF, AWAL	Claudin-5 (transmembrane protein deleted in velocardiofacial syndrome)	CLDN5	7122	ENSG00000184113			Cldn5 (MGI:1276112)
chr22	19714463	19723321	22q11.2	22q11.21	602724	SEPT5, PNUTL1, CDCREL	Septin 5	SEPT5	5413	ENSG00000184702	just 5' of GP1BB		Sept5 (MGI:1195461)
chr22	19723542	19724773	22q11.2	22q11.21	138720	GP1BB, BS, BDPLT1	Glycoprotein Ib, platelet, beta polypeptide	GP1BB	2812	ENSG00000203618		Bernard-Soulier syndrome, type B, 231200 (3), Autosomal recessive; Giant platelet disorder, isolated, 231200 (3), Autosomal recessive	Gp1bb (MGI:107852)
chr22	19756702	19783592	22q11.2	22q11.21	602054	TBX1, DGS, CTHM, CAFS, TGA, DORV, VCFS, DGCR	T-box 1	TBX1	6899	ENSG00000184058		Conotruncal anomaly face syndrome, 217095 (3); DiGeorge syndrome, 188400 (3), Autosomal dominant; Tetralogy of Fallot, 187500 (3), Autosomal dominant; Velocardiofacial syndrome, 192430 (3), Autosomal dominant	Tbx1 (MGI:98493)
chr22	19788410	19854938	22q11.2	22q11.21	610778	GNB1L, WDR14	Guanine nucleotide-binding protein, beta-1-like	GNB1L	54584	ENSG00000185838			Gnb1l (MGI:1338057)
chr22	19875517	19941991	22q11.2	22q11.21	606448	TXNRD2, TRXR2, SELZ, GCCD5	Thioredoxin reductase 2	TXNRD2	10587	ENSG00000184470	mutation identified in 1 GCCD5 family	?Glucocorticoid deficiency 5, 617825 (3), Autosomal recessive	Txnrd2 (MGI:1347023)
chr22	19941739	19969974	22q11.2	22q11.21	116790	COMT	Catechol-O-methyltransferase	COMT	1312	ENSG00000093010		{Panic disorder, susceptibility to}, 167870 (3), ?Autosomal dominant; {Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant	Comt (MGI:88470)
chr22	19966726	20016801	22q11	22q11.21	602269	ARVCF	Armadillo repeat gene deleted in VCFS	ARVCF	421	ENSG00000099889	?role in VCFS		Arvcf (MGI:109620)
chr22	20016999	20067163	22q11.2	22q11.21	616830	TANGO2, C22orf25, MECRCN	Transport and golgi organization 2, Drosophila, homolog of	TANGO2	128989	ENSG00000183597		Metabolic encephalomyopathic crises, recurrent, with rhabdomyolysis, cardiac arrhythmias, and neurodegeneration, 616878 (3), Autosomal recessive	Tango2 (MGI:101825)
chr22	20033138	20033219	22q11.21	22q11.21	615576	MIR185	Micro RNA 185	MIR185	406961		within first intron of C22orf25		
chr22	20080231	20111876	22q11.2	22q11.21	609030	DGCR8	DiGeorge syndrome critical region gene 8	DGCR8	54487	ENSG00000128191			Dgcr8 (MGI:2151114)
chr22	20111865	20117294	22q11.21	22q11.21	611151	TRMT2A, HTF9C	tRNA methyltransferase 2, S. cerevisiae, homolog of, A	TRMT2A	27037	ENSG00000099899			Trmt2a (MGI:96270)
chr22	20115937	20127356	22q11.21	22q11.21	601180	RANBP1, HTF9A	RAN-binding protein 1	RANBP1	5902	ENSG00000099901			Ranbp1 (MGI:96269)
chr22	20131840	20148006	22q11.21	22q11.21	608784	ZDHHC8, ZNF378, KIAA1292	Zinc finger DHHC domain-containing protein 8	ZDHHC8	29801	ENSG00000099904			Zdhhc8 (MGI:1338012)
chr22	20241414	20268292	22q11	22q11.21	605566	RTN4R, NOGOR	NOGO receptor (reticulon 4 receptor)	RTN4R	65078	ENSG00000040608		{Schizophrenia, susceptibility to}, 181500 (3), Autosomal dominant	Rtn4r (MGI:2136886)
chr22	20314237	20320104	22q11	22q11.21	609459	DGCR6L	DiGeorge syndrome critical region gene 6-like	DGCR6L	85359	ENSG00000128185			
chr22	20394114	20408462	22q11.2	22q11.21	194548	ZNF74	Zinc finger protein-74 (Cos52)	ZNF74	7625	ENSG00000185252			
chr22	20424583	20437858	22q11	22q11.21	613619	SCARF2, SREC2, VDEGS	Scavenger receptor class F, member 2	SCARF2	91179	ENSG00000244486		Van den Ende-Gupta syndrome, 600920 (3), Autosomal recessive	Scarf2 (MGI:1858430)
chr22	20507541	20587631	22q11.2	22q11.21	607372	MED15, PCQAP, TIG1, ARC105	Mediator complex subunit 15	MED15	51586	ENSG00000099917			
chr22	20707690	20858811	22q11.21	22q11.21	600286	PI4KA, PIK4CA, PMGYCHA	Phosphatidylinositol 4-kinase, catalytic, alpha	PI4KA	5297	ENSG00000241973		Polymicrogyria, perisylvian, with cerebellar hypoplasia and arthrogryposis, 616531 (3), Autosomal recessive	Pi4ka (MGI:2448506)
chr22	20774094	20787719	22q11	22q11.21	142360	HCF2, HC2, SERPIND1, THPH10	Heparin cofactor II	SERPIND1	3053	ENSG00000099937	proximal to BCR	Thrombophilia due to heparin cofactor II deficiency, 612356 (3), Autosomal dominant	Serpind1 (MGI:96051)
chr22	20859003	20891213	22q11.2	22q11.21	604202	SNAP29, CEDNIK	Synaptosomal-associated protein, 29kD	SNAP29	9342	ENSG00000099940		Cerebral dysgenesis, neuropathy, ichthyosis, and palmoplantar keratoderma syndrome, 609528 (3), Autosomal recessive	Snap29 (MGI:1914724)
chr22	20917406	20953748	22q11	22q11.21	602007	CRKL	v-crk avian sarcoma virus CT10 oncogene homolog-like	CRKL	1399	ENSG00000099942			Crkl (MGI:104686)
chr22	20965129	20981359	22q11.21	22q11.21	617298	AIFM3, AIFL	Apoptosis-inducing factor, mitochondria-associated, 3	AIFM3	150209	ENSG00000183773			Aifm3 (MGI:1919418)
chr22	20982268	20999036	22q11.1-q11.2	22q11.21	600574	LZTR1, SWNTS2, NS10	Leucine-zipper-like regulator-1	LZTR1	8216	ENSG00000099949		Noonan syndrome 10, 616564 (3), Autosomal dominant; {Schwannomatosis-2, susceptibility to}, 615670 (3), Autosomal dominant	Lztr1 (MGI:1914113)
chr22	21009698	21028012	22q11	22q11.21	608077	P2RXL1, P2XM, P2X6	Purinergic receptor P2X-like 1	P2RX6	9127	ENSG00000099957			P2rx6 (MGI:1337113)
chr22	21028717	21032557	22q11.2	22q11.21	603752	SLC7A4, CAT4	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 4	SLC7A4	6545	ENSG00000099960			Slc7a4 (MGI:2146512)
chr22	21207971	21283022	22q11.1	22q11.21	137181	GGT2	Gamma-glutamyltransferase-2	GGT2	728441	ENSG00000133475		[Gamma-glutamyltransferase, familial high serum], 137181 (2)	
chr22	21383750	21389168	22q11.21	22q11.21	612700	RIMBP3B	RIMS-binding protein 3B	RIMBP3B	440804	ENSG00000274600			Rimbp3 (MGI:2685449)
chr22	21417402	21451462	22q11.2	22q11.21	607712	HIC2, HRG22, KIAA1020	Hypermethylated in cancer 2	HIC2	23119	ENSG00000169635			Hic2 (MGI:1929869)
chr22	21545665	21551460	22q11.21	22q11.21	612701	RIMBP3C	RIMS-binding protein 3C	RIMBP3C	150221	ENSG00000183246			Rimbp3 (MGI:2685449)
chr22	21549446	21624033	22q11.2-q13.1	22q11.21	603721	UBE2L3, UBCH7	Ubiquitin-conjugating enzyme E2L 3	UBE2L3	7332	ENSG00000185651	pseudogenes on 12q12 and 19q13.1-q13.2		Ube2l3 (MGI:109240)
chr22	21642252	21644298	22q11.2	22q11.21	607551	SDF2L1	Stromal cell-derived factor 2-like 1	SDF2L1	23753	ENSG00000128228			Sdf2l1 (MGI:2149842)
chr22	21653303	21653384	22q11.21-q11.22	22q11.21	613682	MIR130B, MIRN130B	Micro RNA 130B	MIR130B	406920				
chr22	21665983	21698282	22q11.21	22q11.21	607588	PPIL2, CYP60	Peptidyl-prolyl isomerase-like 2	PPIL2	23759	ENSG00000100023			Ppil2 (MGI:2447857)
chr22	21697535	21735833	22q11.2	22q11.21-q11.22	608082	YPEL1	Yippee-like 1	YPEL1	29799	ENSG00000100027	pseudogene on 9p24.3		Ypel1 (MGI:1913303)
chr22	21759656	21867679	22q11.2	22q11.22	176948	MAPK1, PRKM1, ERK2	Mitogen-activated protein kinase 1	MAPK1	5594	ENSG00000100030			Mapk1 (MGI:1346858)
chr22	21954358	21982842	22q11	22q11.22	603582	TOP3B	Topoisomerase, DNA, III, beta	TOP3B	8940	ENSG00000100038			Top3b (MGI:1333803)
chr22	22244779	22245514	22q11.2	22q11.22	605141	VPREB1, IGI, VPREB	Pre-B lymphocyte gene 1	VPREB1	7441	ENSG00000169575			Vpreb1,Vpreb2 (MGI:98936,MGI:98937)
chr22	22547695	22559360	22q11.22	22q11.22	606021	PRAME, MAPE, OIP4	Preferentially expressed antigen in melanoma	PRAME	23532	ENSG00000185686			
chr22	22644619	22647897	22q11.2	22q11.22	612339	GGTLC2, GGTL4	Gamma-glutamyltransferase, light chain 2	GGTLC2	91227	ENSG00000100121			
chr22	22822775	22822870	22q11.22	22q11.22	615379	MIR650	Micro RNA 650	MIR650	723778				
chr22	22895374	22895693	22q11.2	22q11.22	147220	IGLC1, IGLC	Constant region of lambda light chains	IGLC1	3537		several genes		
chr22	23059407	23180047	22q11.2	22q11.22-q11.23	605663	RSPH14, RTDR1	Radial spoke head 14, Chlamydomonas, homolog of	RSPH14	27156	ENSG00000100218			Rsph14 (MGI:1918486)
chr22	23070348	23125036	22q11.2	22q11.22-q11.23	139160	GNAZ	Guanine nucleotide-binding protein (G protein), alpha z polypeptide	GNAZ	2781	ENSG00000128266			Gnaz (MGI:95780)
chr22	23145297	23169284	22q11.2	22q11.23	605662	RAB36	Ras family, member 36	RAB36	9609	ENSG00000100228			Rab36 (MGI:1924127)
chr22	23180364	23318036	22q11.21	22q11.23	151410	BCR, CML, PHL, ALL	Breakpoint cluster region	BCR	613	ENSG00000186716	Ph1=t(9;22) (q34.1;q11.21); fused with ABL in CML	Leukemia, acute lymphocytic, somatic, 613065 (3); Leukemia, chronic myeloid, somatic, 608232 (3)	Bcr (MGI:88141)
chr22	23573124	23580547	22q11.21	22q11.23	146770	IGLL1, IGO, IGL5, VPREB2, AGM2	Immunoglobulin lambda-like polypeptide 1 (immunoglobulin omega peptide)	IGLL1	3543	ENSG00000128322	between BCR2 and BCR4; distal to IGLC	Agammaglobulinemia 2, 613500 (3), Autosomal recessive	Igll1 (MGI:96529)
chr22	23690860	23699175	22q11.2	22q11.23	612214	RGL4, RGR	Ral guanine nucleotide dissociation stimulator-like 4	RGL4	266747	ENSG00000159496			
chr22	23741583	23751091	22q11.2	22q11.23	194544	ZNF70	Zinc finger protein-70 (Cos17)	ZNF70	7621	ENSG00000187792			
chr22	23752742	23754442	22q11	22q11.23	605017	VPREB3	Pre-B-lymphocyte gene 3	VPREB3	29802	ENSG00000128218			Vpreb3 (MGI:98938)
chr22	23765833	23767971	22q11.23	22q11.23	615903	CHCHD10, FTDALS2, SMAJ, IMMD	Coiled-coil-helix-coiled-coil-helix domain-containing protein 10	CHCHD10	400916	ENSG00000250479	mutation identified in 1 IMMD family	Frontotemporal dementia and/or amyotrophic lateral sclerosis 2, 615911 (3), Autosomal dominant; ?Myopathy, isolated mitochondrial, autosomal dominant, 616209 (3), Autosomal dominant; Spinal muscular atrophy, Jokela type, 615048 (3), Autosomal dominant	Chchd10 (MGI:2143558)
chr22	23772818	23784315	22q11.2	22q11.23	185261	MMP11, STMY3	Matrix metalloproteinase 11 (stromelysin 3)	MMP11	4320	ENSG00000099953			Mmp11 (MGI:97008)
chr22	23786930	23834517	22q11	22q11.23	601607	SMARCB1, SNF5, INI1, RDT, RTPS1, MRD15, SWNTS1, CSS3	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1	SMARCB1	6598	ENSG00000099956		Coffin-Siris syndrome 3, 614608 (3), Autosomal dominant; {Rhabdoid tumor predisposition syndrome 1}, 609322 (3), Autosomal dominant; Rhabdoid tumors, somatic, 609322 (3); {Schwannomatosis-1, susceptibility to}, 162091 (3), Autosomal dominant	Smarcb1 (MGI:1328366)
chr22	23834497	23839347	22q11.23	22q11.23	610305	DERL3	DER1-like domain family, member 3	DERL3	91319	ENSG00000099958			Derl3 (MGI:1917627)
chr22	23856702	23886111	22q11.2	22q11.23	610367	SLC2A11, GLUT11	Solute carrier family 2 (facilitated glucose transporter), member 11	SLC2A11	66035	ENSG00000133460			
chr22	23894377	23895221	22q11.2	22q11.23	153620	MIF	Macrophage migration inhibitory factor	MIF	4282	ENSG00000240972	previously assigned to chr.19	{Rheumatoid arthritis, systemic juvenile, susceptibility to}, 604302 (3)	Mif (MGI:96982)
chr22	23971364	23979827	22q11.2	22q11.23	602750	DDT	D-dopachrome tautomerase	DDT	1652	ENSG00000099977			Ddt (MGI:1298381)
chr22	23980027	23983914	22q11.2	22q11.23	600437	GSTT2	Glutathione S-transferase theta-2	GSTT2	2953	ENSG00000099984			Gstt2 (MGI:106188)
chr22	24011191	24178627	22q11.2	22q11.23	604251	CABIN1, CAIN	Calcineurin-binding protein 1	CABIN1	23523	ENSG00000099991			Cabin1 (MGI:1298375)
chr22	24181475	24189105	22q11.23	22q11.23	615825	SUSD2	Sushi domain-containing protein 2	SUSD2	56241	ENSG00000099994			Susd2 (MGI:1918983)
chr22	24219653	24245141	22q11.2	22q11.23	137168	GGT5	Gamma-glutamyltransferase 5	GGT5	2687	ENSG00000099998			Ggt5 (MGI:1346063)
chr22	24270816	24417739	22q11.23	22q11.23	614140	SPECC1L, KIAA0376, OBLFC1, GBBB2	Sperm antigen with calponin homology and coiled-coil domains 1-like	SPECC1L	23384	ENSG00000100014	mutation identified in 1 OBLFC1 patient	?Facial clefting, oblique, 1, 600251 (3), Autosomal dominant; Opitz GBBB syndrome, type II, 145410 (3), Autosomal dominant	Specc1l (MGI:1921642)
chr22	24423596	24442359	22q11.2	22q11.23	102776	ADORA2A	Adenosine A2a receptor	ADORA2A	135	ENSG00000128271	incorrectly assigned to 11q		Adora2a (MGI:99402)
chr22	24495059	24528680	22q11.2	22q11.23	606673	UPB1, BUP1	Beta-ureidopropionase	UPB1	51733	ENSG00000100024		Beta-ureidopropionase deficiency, 613161 (3), Autosomal recessive	Upb1 (MGI:2143535)
chr22	24555649	24574963	22q11.23	22q11.23	601062	SNRPD3	Small nuclear ribonucleoprotein polypeptide D3	SNRPD3	6634	ENSG00000100028			Snrpd3 (MGI:1914582)
chr22	24583749	24629004	22q11.2	22q11.23	612346	GGT1, GGT	Gamma-glutamyltransferase 1	GGT1	2678	ENSG00000100031		Glutathioninuria, 231950 (1), Autosomal recessive	Ggt1 (MGI:95706)
chr22	24719033	24774719	22q11.2	22q11.23	610314	PIWIL3	PIWI-like 3	PIWIL3	440822	ENSG00000184571			
chr22	25194243	25207616	22q11.2-q12.2	22q11.23	123630	CRYBB3, CRYB3, CATCN2, CTRCT22	Crystallin, beta-B3	CRYBB3	1417	ENSG00000100053		Cataract 22, 609741 (3), Autosomal recessive, Autosomal dominant	Crybb3 (MGI:102717)
chr22	25211659	25231868	22q11.2-q12.2	22q11.23	123620	CRYBB2, CRYB2, CTRCT3, CCA2	Crystallin, beta-B2	CRYBB2	1415	ENSG00000244752	2nd CRYB2 gene in same region	Cataract 3, multiple types, 601547 (3), Autosomal dominant	Crybb2 (MGI:88519)
chr22	25500000	37200000	22q12		613106	BRV2	Vertigo, benign recurrent, 2		100313948			Vertigo, benign recurrent, 2, 613106 (2)	
chr22	25500000	50818468	22q12-q13		603116	CDAGS	Craniosynostosis, anal anomalies, and porokeratosis syndrome		574043			CDAGS syndrome, 603116 (2), Autosomal recessive	
chr22	25500000	50818468	22q12-q13		613284	HCHGQ3	Hematocrit/hemoglobin quantitative trait locus 3		100381206		associated with rs855791	[Hematocrit/hemoglobin quantitative trait locus 3], 613284 (2)	
chr22	25500000	31800000	22q12.1-q12.2		606960	ITS	Insulinoma tumor suppressor gene locus		282551			Insulinoma (1)	
chr22	25500000	37200000	22q12		608207	KAZA1	Kala-azar (visceral leishmaniasis), susceptibility to, 1		387582			{Kala-azar, susceptibility to, 1}, 608207 (2)	
chr22	25500000	37200000	22q12		611004	SQTL2	Smoking as a quantitative trait locus 2		100188828		max lod at D22S315	{Smoking as a quantitative trait locus 2}, 611004 (2)	
chr22	25564893	25729293	22q11	22q12.1	109636	ADRBK2, BARK2, GRK3	Adrenergic, beta, receptor kinase-2	GRK3	157	ENSG00000100077			Grk3 (MGI:87941)
chr22	25742132	26063846	22q12.1	22q12.1	607295	MYO18B, KFS4	Myosin XVIIIB	MYO18B	84700	ENSG00000133454		Klippel-Feil syndrome 4, autosomal recessive, with myopathy and facial dysmorphism, 616549 (3), Autosomal recessive	Myo18b (MGI:1921626)
chr22	26169473	26383596	22q12.1	22q12.1	607021	SEZ6L	Seizure-related 6-like	SEZ6L	23544	ENSG00000100095			Sez6l (MGI:1935121)
chr22	26443108	26483862	22q11.2-q12.2	22q12.1	606682	HPS4	HPS gene 4	HPS4	89781	ENSG00000100099		Hermansky-Pudlak syndrome 4, 614073 (3), Autosomal recessive	Hps4 (MGI:2177742)
chr22	26483866	26494619	22q12.1	22q12.1	602254	SRRD	SRR1 domain-containing protein	SRRD	402055	ENSG00000100104			Srrd (MGI:1917368)
chr22	26491239	26513590	22q12.1	22q12.1	612747	TFIP11, TIP39, NTR1	Tuftelin-interacting protein 11	TFIP11	24144	ENSG00000100109			Tfip11 (MGI:1930075)
chr22	26524081	26590140	22q12.1	22q12.1	603126	TPST2	Tyrosylprotein phosphotransferase 2	TPST2	8459	ENSG00000128294			Tpst2 (MGI:1309516)
chr22	26599277	26618103	22q11.2-q12.1	22q12.1	600929	CRYBB1, CATCN3, CTRCT17	Crystallin, beta B1	CRYBB1	1414	ENSG00000100122		Cataract 17, multiple types, 611544 (3), Autosomal recessive, Autosomal dominant	Crybb1 (MGI:104992)
chr22	26607981	26630671	22q11.2-q13.1	22q12.1	123631	CRYBA4, CTRCT23	Crystallin, beta polypeptide A4	CRYBA4	1413	ENSG00000196431		Cataract 23, 610425 (3)	Cryba4 (MGI:102716)
chr22	26657481	26676477	22q12.1	22q12.1	611082	MIAT, C22orf35	MIAT gene	MIAT	440823			{Myocardial infarction, susceptibility to}, 608446 (3)	
chr22	27748276	27801497	22q12.3-qter	22q12.1	156100	MN1, MGCR	Meningioma chromosome region	MN1	4330	ENSG00000169184	fused with TEL in AML	Meningioma, 607174 (3), Autosomal dominant	Mn1 (MGI:1261813)
chr22	27851668	27919305	22q12.1	22q12.1	606876	PITPNB	Phosphatidylinositol transfer protein, beta	PITPNB	23760	ENSG00000180957			Pitpnb (MGI:1927542)
chr22	27978013	28679864	22q12.1	22q12.1	615098	TTC28, TPRBK, KIAA1043	Tetratricopeptide repeat domain-containing protein 28	TTC28	23331	ENSG00000100154			Ttc28 (MGI:2140873)
chr22	28687742	28741865	22q12.1	22q12.1	604373	CHEK2, RAD53, CHK2, CDS1, LFS2	Checkpoint kinase 2, S. pombe, homolog of (RAD53, S. cerevisiae, homolog of)	CHEK2	11200	ENSG00000183765		{Breast and colorectal cancer, susceptibility to} (3); {Breast cancer, susceptibility to}, 114480 (3), Autosomal dominant; Li-Fraumeni syndrome, 609265 (3); Osteosarcoma, somatic, 259500 (3); {Prostate cancer, familial, susceptibility to}, 176807 (3), Autosomal dominant	Chek2 (MGI:1355321)
chr22	28741991	28757517	22q11-q12	22q12.1	608142	HSC20, HSCB, JAC1	HSC20, E. coli, homolog of	HSCB	150274	ENSG00000100209			Hscb (MGI:2141135)
chr22	28794559	28800571	22q12	22q12.1	194355	XBP1, XBP2	X-box-binding protein-1	XBP1	7494	ENSG00000100219	pseudogene on chr.5	{Major affective disorder-7, susceptibility to}, 612371 (3)	Xbp1 (MGI:98970)
chr22	28800656	29057487	22q12.1	22q12.1	612062	ZNRF3, KIAA1133	Zinc finger and ring finger protein 3	ZNRF3	84133	ENSG00000183579			Znrf3 (MGI:3039616)
chr22	29073077	29168332	22q12.1	22q12.1	609898	KREMEN1, KRM1, ECTD13	Kringle domain-containing transmembrane protein 1	KREMEN1	83999	ENSG00000183762		Ectodermal dysplasia 13, hair/tooth type, 617392 (3), Autosomal recessive	Kremen1 (MGI:1933988)
chr22	29268008	29300524	22q12	22q12.2	133450	EWSR1, EWS	Ewing sarcoma breakpoint region-1	EWSR1	2130	ENSG00000182944	t(11;22)(q24;q12); t(21;22)(q22;q12)	Ewing sarcoma, 612219 (3); Neuroepithelioma, 612219 (3)	
chr22	29306649	29312788	22q12	22q12.2	602128	GAS2L1, GAR22	Growth arrest-specific 2 like 1	GAS2L1	10634	ENSG00000185340			Gas2l1 (MGI:1926176)
chr22	29312932	29319617	22q12	22q12.2	602220	RASL10A, RRP22	Ras-like, family 10, member A	RASL10A	10633	ENSG00000100276			Rasl10a (MGI:1922918)
chr22	29327679	29388582	22q12	22q12.2	600157	AP1B1, ADTB1, BAM22, CLAPB2	Adaptor-related protein complex 1, beta 1 subunit (adaptin, beta)	AP1B1	162	ENSG00000100280			Ap1b1 (MGI:1096368)
chr22	29403030	29442489	22q12-q13	22q12.2	605968	RFPL1	RET finger protein-like 1	RFPL1	5988	ENSG00000128250			
chr22	29437014	29442128	22q12-q13	22q12.2	605972	RFPL1S	Ret finger protein-like 1, antisense	RFPL1S	10740				
chr22	29480191	29491289	22q12.2	22q12.2	162230	NEFH, CMT2CC	Neurofilament, heavy polypeptide	NEFH	4744	ENSG00000100285	mutation identified in 1 family with ALS susceptibility	?{Amyotrophic lateral sclerosis, susceptibility to}, 105400 (3), Autosomal recessive, Autosomal dominant; Charcot-Marie-Tooth disease, axonal, type 2CC, 616924 (3), Autosomal dominant	Nefh (MGI:97309)
chr22	29508166	29553759	22q12	22q12.2	612733	THOC5, FMIP	THO complex 5	THOC5	8563	ENSG00000100296			Thoc5 (MGI:1351333)
chr22	29554807	29581336	22q12	22q12.2	603249	NIPSNAP1	4-nitrophenylphosphatase domain and nonneuronal SNAP25-like 1	NIPSNAP1	8508	ENSG00000184117			Nipsnap1 (MGI:1278344)
chr22	29603555	29698599	22q12.2	22q12.2	607379	NF2	Merlin	NF2	4771	ENSG00000186575	loss of heterozygosity	Meningioma, NF2-related, somatic, 607174 (3); Neurofibromatosis, type 2, 101000 (3), Autosomal dominant; Schwannomatosis, somatic, 162091 (3)	Nf2 (MGI:97307)
chr22	29767368	29770412	22cen-q12	22q12.2	610843	UCRC	Ubiquinol-cytochrome C reductase complex, 7.2kD subunit	UQCR10	29796	ENSG00000184076			Uqcr10 (MGI:1913402)
chr22	29788607	29838303	22q12.2	22q12.2	614216	ASCC2, p100	Activating signal cointegrator 1 complex, subunit 2	ASCC2	84164	ENSG00000100325			Ascc2 (MGI:1922702)
chr22	29883164	30030867	22q12	22q12.2	603558	MTMR3	Myotubularin-related protein 3	MTMR3	8897	ENSG00000100330			Mtmr3 (MGI:1921552)
chr22	30240446	30257486	22q12.1-q12.2	22q12.2	159540	LIF, HILDA	Leukemia inhibitory factor (cholinergic differentiation factor)	LIF	3976	ENSG00000128342	distal to ES		Lif (MGI:96787)
chr22	30262827	30266842	22q12.1-q12.2	22q12.2	165095	OSM	Oncostatin M	OSM	5008	ENSG00000099985	10kb from LIF		Osm (MGI:104749)
chr22	30285117	30289626	22q12.2	22q12.2	617034	GATSL3, CASTOR1	GATS protein-like 3	CASTOR1	652968	ENSG00000239282			Gatsl3 (MGI:1919212)
chr22	30291989	30326965	22q12.1-qter	22q12.2	610020	TBC1D10A, EPI64	TBC1 domain family, member 10A	TBC1D10A	83874	ENSG00000099992			Tbc1d10a (MGI:2144164)
chr22	30331987	30356946	22q12.2	22q12.2	605595	SF3A1, SF3A120, SAP114, PRP21	Splicing factor 3A, subunit 1	SF3A1	10291	ENSG00000099995			Sf3a1 (MGI:1914715)
chr22	30396940	30425302	22q12.1-qter	22q12.2	607558	SEC14L2, TAP, KIAA1186	Sec14-like 2	SEC14L2	23541	ENSG00000100003			Sec14l2 (MGI:1915065)
chr22	30425622	30429053	22q12.2	22q12.2	610235	MTFP1	Mitochondrial fission process 1	MTFP1	51537	ENSG00000242114			Mtfp1 (MGI:1916686)
chr22	30447958	30472046	22q12	22q12.2	612824	SEC14L3, TAP2	Sec14-like 3	SEC14L3	266629	ENSG00000100012			Sec14l3 (MGI:3617848)
chr22	30488149	30505710	22q12	22q12.2	612825	SEC14L4, TAP3	Sec14-like 4	SEC14L4	284904	ENSG00000133488			Sec14l4 (MGI:2144095)
chr22	30554634	30574587	22q12.2	22q12.2	602300	GAL3ST1, CST	Galactose-3-O-sulfotransferase 1	GAL3ST1	9514	ENSG00000128242			Gal3st1 (MGI:1858277)
chr22	30576624	30607012	22q12.1	22q12.2	605819	PES1, PES	Pescadillo, zebrafish, homolog of, 1	PES1	23481	ENSG00000100029			Pes1 (MGI:1890613)
chr22	30607082	30627059	22q11.2-qter	22q12.2	613441	TCN2, TC2	Transcobalamin II	TCN2	6948	ENSG00000185339	linked to P1	Transcobalamin II deficiency, 275350 (3), Autosomal recessive	Tcn2 (MGI:98534)
chr22	30693781	30907823	22q12	22q12.2	606729	OSBP2, ORP4, KIAA1664	Oxysterol-binding protein 2	OSBP2	23762	ENSG00000184792			Osbp2 (MGI:1921559)
chr22	30925129	30968286	22q12.2	22q12.2	616661	MORC2, ZCW3, ZCWCC1, KIAA0852, CMT2Z	MORC family CW-type zinc finger protein 2	MORC2	22880	ENSG00000133422		Charcot-Marie-Tooth disease, axonal, type 2Z, 616688 (3), Autosomal dominant	Morc2a (MGI:1921772)
chr22	30969210	30979394	22q12.2	22q12.2	614971	TUG1	Taurine-upregulated gene 1, noncoding	TUG1	55000				
chr22	31081295	31104623	22q12.3	22q12.2	602127	SMTN	Smoothelin	SMTN	6525	ENSG00000183963			Smtn (MGI:1354727)
chr22	31104771	31107586	22q12.2	22q12.2	610918	SELENOM, SELM, SEPM	Selenoprotein M	SELENOM	140606	ENSG00000198832			Selenom (MGI:2149786)
chr22	31107735	31134696	22q11.2-q13.2	22q12.2	606481	INPP5J, PIB5PA, PIPP	Inositol polyphosphate-5-phosphatase J	INPP5J	27124	ENSG00000185133			Inpp5j (MGI:2158663)
chr22	31134806	31140606	22q11.2-q13.2	22q12.2	611651	PLA2G3, SPLA2III	Phospholipase A2, group III	PLA2G3	50487	ENSG00000100078			Pla2g3 (MGI:2444945)
chr22	31212263	31280079	22q12.2	22q12.2	601988	LIMK2	LIM domain kinase 2	LIMK2	3985	ENSG00000182541			Limk2 (MGI:1197517)
chr22	31325803	31346262	22q12	22q12.2	605165	ZNF278, PATZ, MAZR	Zinc finger protein-278	PATZ1	23598	ENSG00000100105			Patz1 (MGI:1891832)
chr22	31434647	31489949	22q11.2	22q12.2	607445	EIF4ENIF1	Eukaryotic translation initiation factor 4E nuclear import factor 1	EIF4ENIF1	56478	ENSG00000184708			Eif4enif1 (MGI:1921453)
chr22	31496138	31618553	22q12.2	22q12.2	612765	SFI1, KIAA0542	SFI1, yeast, homolog of	SFI1	9814	ENSG00000198089			Sfi1 (MGI:1926137)
chr22	31618490	31662563	22q12	22q12.2	612770	PISD, PSD, PSSC	Phosphatidylserine decarboxylase	PISD	23761	ENSG00000241878			Pisd (MGI:2445114)
chr22	31753950	31907033	22q12.2-q12.3	22q12.2-q12.3	614191	DEPDC5, KIAA0645, FFEVF1	DEP domain-containing protein 5	DEPDC5	9681	ENSG00000100150		Epilepsy, familial focal, with variable foci 1, 604364 (3), Autosomal dominant	Depdc5 (MGI:2141101)
chr22	31800000	37200000	22q12.3		609558	HPC6	Prostate cancer, hereditary, 6		100188789		between D22S1265 and D22S277	{Prostate cancer, susceptibility to}, 176807 (2), Autosomal dominant	
chr22	31800000	40600000	22q12.3-q13.1		613689	MDNS	Mammary-digital-nail syndrome		100529148		max lod at D22S277, D22S1142, D22S683, D22S283	Mammary-digital-nail syndrome, 613689 (2), Autosomal dominant	
chr22	31944492	31957602	22q12	22q12.3	113508	YWHAH, YWHA1	Tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide 22	YWHAH	7533	ENSG00000128245			Ywhah (MGI:109194)
chr22	32043031	32113028	22q13.1	22q12.3	182380	SLC5A1, SGLT1	Solute carrier family 5 (sodium/glucose transporter), member 1	SLC5A1	6523	ENSG00000100170		Glucose/galactose malabsorption, 606824 (3), Autosomal recessive	Slc5a1 (MGI:107678)
chr22	32190434	32204848	22q12-q13	22q12.3	605969	RFPL2	RET finger protein-like 2	RFPL2	10739	ENSG00000128253			
chr22	32354884	32361160	22q12-q13	22q12.3	605970	RFPL3	RET finger protein-like 3	RFPL3	10738	ENSG00000128276			
chr22	32359905	32371263	22q12-q13	22q12.3	605971	RFPL3S	Ret finger protein-like 3, antisense	RFPL3S	10737				
chr22	32387574	32412286	22q12.3	22q12.3	613901	RTCB, C22orf28, HSPC117	RNA 2-prime, 3-prime cyclic phosphate and 5-prime-OH ligase	RTCB	51493	ENSG00000100220			Rtcb (MGI:106379)
chr22	32413844	32464464	22q13	22q12.3	614109	BPIFC, BPIL2	BPI fold-containing protein, family C	BPIFC	254240	ENSG00000184459			Bpifc (MGI:3026884)
chr22	32474681	32498830	22q12-q13	22q12.3	605648	FBXO7, FBX7, FBX, PKPS, PARK15	F-box only protein 7	FBXO7	25793	ENSG00000100225		Parkinson disease 15, autosomal recessive, 260300 (3), Autosomal recessive	Fbxo7 (MGI:1917004)
chr22	32507819	33058390	22q12.3	22q12.3	602705	SYN3	Synapsin III	SYN3	8224	ENSG00000185666	?relation to schizophrenia		Syn3 (MGI:1351334)
chr22	32800815	32863040	22q12.1-q13.2	22q12.3	188826	TIMP3, SFD	Tissue inhibitor of metalloproteinase-3	TIMP3	7078	ENSG00000100234		Sorsby fundus dystrophy, 136900 (3), Autosomal dominant	Timp3 (MGI:98754)
chr22	33162236	33922840	22q12.3-q13.1	22q12.3	603590	LARGE, KIAA0609, MDC1D, MDDGA6, MDDGB6	Acetylglucosaminyltransferase-like protein	LARGE1	9215	ENSG00000133424		Muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type A, 6, 613154 (3), Autosomal recessive; Muscular dystrophy-dystroglycanopathy (congenital with mental retardation), type B, 6, 608840 (3), Autosomal recessive	Large1 (MGI:1342270)
chr22	35066135	35087386	22q12.3	22q12.3	612019	ISX, RAXLX	Intestine-specific homeobox	ISX	91464	ENSG00000175329			Isx (MGI:1918847)
chr22	35256696	35295806	22q13.1	22q12.3	604702	HMGXB4, HMG2L1	HMG box domain-containing 4	HMGXB4	10042	ENSG00000100281			Hmgxb4 (MGI:1918073)
chr22	35299274	35347993	22q13.1	22q12.3	604700	TOM1	Target of MYB1, chicken, homolog of	TOM1	10043	ENSG00000100284			Tom1 (MGI:1338026)
chr22	35381066	35394213	22q12	22q12.3	141250	HMOX1, HMOX1D	Heme oxygenase 1	HMOX1	3162	ENSG00000100292		Heme oxygenase-1 deficiency, 614034 (3); {Pulmonary disease, chronic obstructive, susceptibility to}, 606963 (3)	Hmox1 (MGI:96163)
chr22	35400122	35454941	22q13.1	22q12.3	602696	MCM5, CDC46, MGORS8	Minichromosome maintenance, S. cerevisiae, homolog of, 5	MCM5	4174	ENSG00000100297	mutation identified in 1 MGORS8 patient	?Meier-Gorlin syndrome 8, 617564 (3), Autosomal recessive	Mcm5 (MGI:103197)
chr22	35540500	35554002	22q12.3	22q12.3	612842	RASD2, RHES, TEM2	RASD family, member 2	RASD2	23551	ENSG00000100302			Rasd2 (MGI:1922391)
chr22	35606763	35623353	22q11.2-q13	22q12.3	160000	MB	Myoglobin	MB	4151	ENSG00000198125			Mb (MGI:96922)
chr22	35648315	35668408	22q12.3	22q12.3	607256	APOL6	Apolipoprotein L6	APOL6	80830	ENSG00000221963			Apol6 (MGI:1919189)
chr22	35708423	35730324	22q12.3	22q12.3	607255	APOL5	Apolipoprotein L5	APOL5	80831	ENSG00000128313			
chr22	35738733	36028891	22q13.1	22q12.3	612149	RBFOX2, RBM9, FOX2, RTA	RNA binding protein, fox-1 homolog 2	RBFOX2	23543	ENSG00000100320			Rbfox2 (MGI:1933973)
chr22	36140322	36166176	22q12.3	22q12.3	607253	APOL3	Apolipoprotein L3	APOL3	80833	ENSG00000128284			
chr22	36189127	36204832	22q12.3	22q12.3	607254	APOL4	Apolipoprotein L4	APOL4	80832	ENSG00000100336		{Schizophrenia}, 181500 (1), Autosomal dominant	
chr22	36226208	36239953	22q12.3	22q12.3	607252	APOL2	Apolipoprotein L2	APOL2	23780	ENSG00000128335		{Schizophrenia}, 181500 (1), Autosomal dominant	Apol8 (MGI:2444921)
chr22	36253070	36267530	22q12.3	22q12.3	603743	APOL1, FSGS4	Apolipoprotein L1	APOL1	8542	ENSG00000100342		{End-stage renal disease, nondiabetic, susceptibility to}, 612551 (3); {Glomerulosclerosis, focal segmental, 4, susceptibility to}, 612551 (3)	
chr22	36281276	36388066	22q11.2	22q12.3	160775	MYH9, MHA, FTNS, DFNA17, BDPLT6	Myosin, heavy polypeptide-9, nonmuscle	MYH9	4627	ENSG00000100345		Deafness, autosomal dominant 17, 603622 (3), Autosomal dominant; Epstein syndrome, 153650 (3), Autosomal dominant; Fechtner syndrome, 153640 (3), Autosomal dominant; Macrothrombocytopenia and progressive sensorineural deafness, 600208 (3), Autosomal dominant; May-Hegglin anomaly, 155100 (3), Autosomal dominant; Sebastian syndrome, 605249 (3), Autosomal dominant	Myh9 (MGI:107717)
chr22	36467035	36482024	22q12.3	22q12.3	609063	TXN2, TRX2, MTRX, COXPD29	Thioredoxin 2	TXN2	25828	ENSG00000100348	mutation identified in 1 COXPD29 patient	?Combined oxidative phosphorylation deficiency 29, 616811 (3), Autosomal recessive	Txn2 (MGI:1929468)
chr22	36487185	36507100	22q12.3	22q12.3	613777	FOXRED2, ERFAD	FAD-dependent oxidoreductase domain-containing protein 2	FOXRED2	80020	ENSG00000100350			Foxred2 (MGI:106315)
chr22	36510849	36529229	22q13.1	22q12.3	603915	EIF3D, EIF3S7	Eukaryotic translation initiation factor 3, subunit D	EIF3D	8664	ENSG00000100353			Eif3d (MGI:1933181)
chr22	36560868	36702857	22q13.1	22q12.3	602911	CACNG2, MRD10	Calcium channel, voltage-dependent, gamma-2 subunit (stargazin)	CACNG2	10369	ENSG00000166862	mutation identified one MRD10 patient	?Mental retardation, autosomal dominant 10, 614256 (3)	Cacng2 (MGI:1316660)
chr22	36758201	36776132	22q12.3	22q12.3	615870	IFT27, RABL4, BBS19	Intraflagellar transport 27, Chlamydomonas, homolog of	IFT27	11020	ENSG00000100360	mutation identified in 1 BBS19 family	?Bardet-Biedl syndrome 19, 615996 (3), Autosomal recessive	Ift27 (MGI:1914292)
chr22	36800700	36819472	22q12-q13.1	22q12.3	168890	PVALB	Parvalbumin	PVALB	5816	ENSG00000100362	?role in DiGeorge syndrome		Pvalb (MGI:97821)
chr22	36860987	36878016	22q13.1	22q12.3	601488	NCF4, P40PHOX, CGD3	Neutrophil cytosolic factor-4	NCF4	4689	ENSG00000100365	mutation identified in 1 CGD3 patient	?Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type III, 613960 (3), Autosomal recessive	Ncf4 (MGI:109186)
chr22	36913573	36940448	22q12.2-q13.1	22q12.3	138981	CSF2RB, SMDP5	Colony-stimulating factor-2 receptor, beta, low-affinity	CSF2RB	1439	ENSG00000100368		Surfactant metabolism dysfunction, pulmonary, 5, 614370 (3), Autosomal recessive	Csf2rb2,Csf2rb (MGI:1339759,MGI:1339760)
chr22	37010858	37020182	22q11.2-qter	22q12.3	180370	TST, RDS	Thiosulfate sulfurtransferase (Rhodanese)	TST	7263	ENSG00000128311			Tst (MGI:98852)
chr22	37019641	37029821	22q11.2-qter	22q12.3	602496	MPST	Mercaptopyruvate sulfurtransferase	MPST	4357	ENSG00000128309			Mpst (MGI:2179733)
chr22	37051724	37063389	22q12.3	22q12.3	616386	KCTD17	Potassium channel tetramerization domain-containing protein 17	KCTD17	79734	ENSG00000100379		Dystonia 26, myoclonic, 616398 (3), Autosomal dominant	Kctd17 (MGI:1920094)
chr22	37065435	37110624	22q12-q13	22q12.3	609862	TMPRSS6, IRIDA	Transmembrane protease, serine 6 (matriptase 2)	TMPRSS6	164656	ENSG00000187045		Iron-refractory iron deficiency anemia, 206200 (3), Autosomal recessive	Tmprss6 (MGI:1919003)
chr22	37125837	37175117	22q11.2-q13	22q12.3	146710	IL2RB	Interleukin-2 receptor, beta polypeptide	IL2RB	3560	ENSG00000100385			Il2rb (MGI:96550)
chr22	37180165	37199400	22q12.3	22q12.3	614910	C1QTNF6, CTFP6	C1q- and tumor necrosis factor-related protein 6	C1QTNF6	114904	ENSG00000133466			C1qtnf6 (MGI:1919959)
chr22	37200000	50818468	22q13		615538	DUP22q13, C22DUPq13	Chromosome 22q13 duplication syndrome					Chromosome 22q13 duplication syndrome, 615538 (4), Isolated cases	
chr22	37200000	50818468	22q13		610873	MENAQ1	Menarche, age at, QTL 1		100188822		max lod at UT7136	{Menarche, age at, QTL}, 610873 (2)	
chr22	37200000	50818468	22q13		613282	NAFLD1	Fatty liver disease, nonalcoholic, susceptibility to, 1		100380876		associated with rs738409	{Fatty liver disease, nonalcoholic, susceptibility to, 1}, 613282 (2), Multifactorial	
chr22	37200000	50818468	22q13		612417	NRCLP4	Narcolepsy 4		100216484		associated with rs5770917	{Narcolepsy 4}, 612417 (2)	
chr22	37204236	37220450	22q13.1	22q13.1	182453	SSTR3	Somatostatin receptor-3	SSTR3	6753	ENSG00000278195			Sstr3 (MGI:98329)
chr22	37225260	37244298	22q12.3-q13.2	22q13.1	602049	RAC2	Ras-related C3 botulinum toxin substrate 3 (rho family, small GTP-binding protein Rac2)	RAC2	5880	ENSG00000128340		Neutrophil immunodeficiency syndrome, 608203 (3)	Rac2 (MGI:97846)
chr22	37282382	37315347	22q12.3-q13.1	22q13.1	606514	CYTH4, PSCD4, CYT4	Cytohesin 4	CYTH4	27128	ENSG00000100055			Cyth4 (MGI:2441702)
chr22	37469062	37486439	22q12	22q13.1	602577	MFNG	Manic fringe	MFNG	4242	ENSG00000100060			Mfng (MGI:1095404)
chr22	37490361	37519202	22q13.1	22q13.1	607209	CARD10, CARMA3, BIMP1	Caspase recruitment domain-containing protein 10	CARD10	29775	ENSG00000100065			Card10 (MGI:2146012)
chr22	37559777	37569404	22q13.1	22q13.1	606084	CDC42EP1, MSE55, BORG5, CEP1	CDC42 effector protein 1	CDC42EP1	11135	ENSG00000128283			Cdc42ep1 (MGI:1929763)
chr22	37570245	37580016	22q13.1	22q13.1	150571	LGALS2	Lectin, galactoside-binding, soluble, 2	LGALS2	3957	ENSG00000100079		{Myocardial infarction, susceptibility to}, 608446 (3)	Lgals2 (MGI:895068)
chr22	37608473	37633563	22q13.31	22q13.1	606004	GGA1	Golgi associated, gamma adaptin ear containing, ARF binding protein 1	GGA1	26088	ENSG00000100083			Gga1 (MGI:2146207)
chr22	37639474	37656118	22q13.1	22q13.1	617368	SH3BP1, ARHGAP43, BGIN	SH3 domain-binding protein 1	SH3BP1	23616	ENSG00000100092			Sh3bp1 (MGI:104603)
chr22	37675605	37679801	22q12-q13.1	22q13.1	150570	LGALS1	Lectin, galactose-binding, soluble, 1	LGALS1	3956	ENSG00000100097			Lgals1 (MGI:96777)
chr22	37696987	37776555	22q13.1	22q13.1	609761	TRIOBP, KIAA1662	Trio- and F-actin-binding protein	TRIOBP	11078	ENSG00000100106		Deafness, autosomal recessive 28, 609823 (3), Autosomal recessive	Triobp (MGI:1349410)
chr22	37805106	37807435	22q13.1	22q13.1	142708	H1F0, H1FV	H1 histone family, member 0	H1F0	3005	ENSG00000189060			H1f0 (MGI:95893)
chr22	37807893	37817176	22q12-q13	22q13.1	607422	GCAT, KBL	Glycine C-acetyltransferase	GCAT	23464	ENSG00000100116			Gcat (MGI:1349389)
chr22	37823381	37825494	22q12.2-q13.1	22q13.1	603692	GALR3	Galanin receptor 3	GALR3	8484	ENSG00000128310			Galr3 (MGI:1329003)
chr22	37830852	37849317	22q13.1	22q13.1	613383	ANKRD54, LIAR	Ankyrin repeat domain-containing protein 54	ANKRD54	129138	ENSG00000100124			Ankrd54 (MGI:2444209)
chr22	37847677	37847773	22q13.1	22q13.1	613556	MIR659	Micro RNA 659	MIR659	724029				
chr22	37953662	38041914	22q13.1	22q13.1	604414	POLR2F	Polymerase II, RNA, subunit F	POLR2F	5435	ENSG00000100142			Polr2f (MGI:1349393)
chr22	37972311	37984531	22q13	22q13.1	602229	SOX10, WS4, WS4C, PCWH	SRY (sex-determining region Y)-box-10	SOX10	6663	ENSG00000100146	megacolon and spotting in mice	PCWH syndrome, 609136 (3), Autosomal dominant; Waardenburg syndrome, type 2E, with or without neurologic involvement, 611584 (3), Autosomal dominant; Waardenburg syndrome, type 4C, 613266 (3), Autosomal dominant	Sox10 (MGI:98358)
chr22	38056310	38075703	22q12.3-q13.2	22q13.1	605926	PICK1, PRKCABP	Protein interacting with C kinase 1	PICK1	9463	ENSG00000100151			Pick1 (MGI:894645)
chr22	38078136	38083162	22q12.3-q13.2	22q13.1	610409	SLC16A8, MCT3	Solute carrier family 16 (monocarboxylic acid transporter), member 8	SLC16A8	23539	ENSG00000100156			Slc16a8 (MGI:1929519)
chr22	38084888	38110943	22q13.1	22q13.1	617536	BAIAP2L2, PINKBAR	Bai1-associated protein 2-like 2	BAIAP2L2	80115	ENSG00000128298			Baiap2l2 (MGI:2652819)
chr22	38111494	38192099	22q13.1	22q13.1	603604	PLA2G6, IPLA2, INAD1, NBIA2B, NBIA2A, PARK14	Phospholipase A2, group VI	PLA2G6	8398	ENSG00000184381		Infantile neuroaxonal dystrophy 1, 256600 (3), Autosomal recessive; Neurodegeneration with brain iron accumulation 2B, 610217 (3), Autosomal recessive; Parkinson disease 14, autosomal recessive, 612953 (3), Autosomal recessive	Pla2g6 (MGI:1859152)
chr22	38201931	38216510	22q12.2-q13.2	22q13.1	604877	MAFF	v-MAF avian musculoaponeurotic fibrosarcoma oncogene family, protein F	MAFF	23764	ENSG00000185022			Maff (MGI:96910)
chr22	38290690	38318083	22q12-q13	22q13.1	600863	CSNK1E	Casein kinase-1, epsilon	CSNK1E	1454	ENSG00000213923			Csnk1e (MGI:1351660)
chr22	38426326	38455198	22q13.1	22q13.1	600504	KCNJ4, HIR	Potassium inwardly-rectifying channel, subfamily J, member 4	KCNJ4	3761	ENSG00000168135			Kcnj4 (MGI:104743)
chr22	38483437	38506339	22q13.1	22q13.1	608469	DDX17, RH70, P72	DEAD/H box-17	DDX17	10521	ENSG00000100201			Ddx17 (MGI:1914290)
chr22	38509153	38570285	22q13.1	22q13.1	602721	DMC1, LIM15	Disrupted meiotic cDNA 1, yeast, homolog of	DMC1	11144	ENSG00000100206			Dmc1 (MGI:105393)
chr22	38656652	38673849	22q12-q13	22q13.1	607757	CBY, C22orf2, HS508I15A	Chibby	CBY1	25776	ENSG00000100211			Cby1 (MGI:1920989)
chr22	38681948	38684759	22q12-q13	22q13.1	607046	TOMM22, TOM22	Translocase of outer mitochondrial membrane 22, yeast, homolog of	TOMM22	56993	ENSG00000100216			Tomm22 (MGI:2450248)
chr22	38683915	38701417	22q13.1	22q13.1	615323	JOSD1, KIAA0063	Josephin domain-containing protein 1	JOSD1	9929	ENSG00000100221			
chr22	38704560	38738264	22q12-q13.1	22q13.1	602245	GTPBP1, GP1	GTP-binding protein 1	GTPBP1	9567	ENSG00000100226			Gtpbp1 (MGI:109443)
chr22	38734713	38756018	22q12-q13	22q13.1	613569	SUN2, UNC84B, KIAA0668	SAD1 and UNC84 domain-containing protein 2	SUN2	25777	ENSG00000100242			Sun2 (MGI:2443011)
chr22	38778507	38794155	22q13.1	22q13.1	610565	DNAL4, MRMV3	Dynein, axonemal, light chain 4	DNAL4	10126	ENSG00000100246	mutation identified in 1 MRMV3 family	?Mirror movements 3, 616059 (3), Autosomal recessive	Dnal4 (MGI:1859217)
chr22	38861426	38872333	22q13.1	22q13.1	617438	CBX6	Chromobox homolog 6	CBX6	23466	ENSG00000183741			Cbx6 (MGI:3512628)
chr22	38957521	38963182	22q13	22q13.1	607109	APOBEC3A, PHRBN	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3A (phorbolin 1)	APOBEC3A	200315	ENSG00000128383			
chr22	38982398	38992778	22q13	22q13.1	607110	APOBEC3B, PHRBNL	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3B	APOBEC3B	9582	ENSG00000179750			Apobec3 (MGI:1933111)
chr22	39014235	39020351	22q13	22q13.1	607750	APOBEC3C	Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3C	APOBEC3C	27350	ENSG00000244509			
chr22	39019080	39055971	22q12-q13.2	22q13.1	608993	APOBEC3F	Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3F	APOBEC3F	200316	ENSG00000128394			
chr22	39077004	39087742	22q12-q13.2	22q13.1	607113	APOBEC3G, MDS019, CEM15, FLJ12740	Apolipoprotein B mRNA-editing enzyme, catalytic polypeptide-like 3G	APOBEC3G	60489	ENSG00000239713			
chr22	39097202	39104066	22q13.1	22q13.1	610976	APOBEC3H, ARP10	Apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3H	APOBEC3H	164668	ENSG00000100298			
chr22	39130771	39152649	22q13.1	22q13.1	608457	CBX7	Chromobox homolog 7	CBX7	23492	ENSG00000100307			Cbx7 (MGI:1196439)
chr22	39223358	39245054	22q12.3-q13.1	22q13.1	190040	PDGFB, SIS, IBGC5	Platelet-derived growth factor, beta polypeptide (oncogene SIS)	PDGFB	5155	ENSG00000100311	fused with COL1A1 in DFSP	Basal ganglia calcification, idiopathic, 5, 615483 (3), Autosomal dominant; Dermatofibrosarcoma protuberans, 607907 (3); Meningioma, SIS-related, 607174 (3), Autosomal dominant	Pdgfb (MGI:97528)
chr22	39312881	39319664	22q	22q13.1	604163	RPL3	Ribosomal protein L3	RPL3	6122	ENSG00000100316			Rpl3 (MGI:1351605)
chr22	39313818	39313910	22q13	22q13.1	611071	SNORD83B, RNU83B	Small nucleolar RNA, C/D box, 83B	SNORD83B	116938				
chr22	39315212	39315306	22q13	22q13.1	611070	SNORD83A, RNU83A	Small nucleolar RNA, C/D box, 83A	SNORD83A	116937				
chr22	39316841	39316895	22q13	22q13.1	611069	RNU86	RNA, U86 small nucleolar	SNORD139	116936				
chr22	39319051	39319112	22q13	22q13.1	611068	SNORD43, RNU43	Small nucleolar RNA, C/D box, 43	SNORD43	26807				
chr22	39349948	39385587	22q13	22q13.1	603925	SYNGR1	Synaptogyrin 1	SYNGR1	9145	ENSG00000100321			Syngr1 (MGI:1328323)
chr22	39399753	39437126	22q13.1	22q13.1	602615	TAB1, MAP3K7IP1	Tak1 (MAP3K7) binding protein 1	TAB1	10454	ENSG00000100324			Tab1 (MGI:1913763)
chr22	39447166	39492193	22q13.1	22q13.1	604621	MGAT3, GNT3	Beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase	MGAT3	4248	ENSG00000128268			Mgat3 (MGI:104532)
chr22	39500099	39518133	22q13.1	22q13.1	615497	MEIF1, SMCR7L, MID51	Mitochondrial elongation factor 1	MIEF1	54471	ENSG00000100335			Mief1 (MGI:2146020)
chr22	39514493	39522685	22q13.1	22q13.1	604064	ATF4, CREB2, TAXREB67	Activating transcription factor 4	ATF4	468	ENSG00000128272			Atf4 (MGI:88096)
chr22	39529092	39532854	22q13.1	22q13.1	610225	RPS19BP1, S19BP, MGC52010	Ribosomal protein S19 binding protein 1	RPS19BP1	91582	ENSG00000187051			Rps19bp1 (MGI:1913788)
chr22	39570752	39689736	22q13.1	22q13.1	608230	CACNA1I, KIAA1120	Calcium channel, voltage-dependent, T type, alpha-1I subunit	CACNA1I	8911	ENSG00000100346			Cacna1i (MGI:2178051)
chr22	39901072	39973342	22q12-qter	22q13.1	604518	GRAP2, GRID	GRB2-related adaptor protein 2	GRAP2	9402	ENSG00000100351			Grap2 (MGI:1333842)
chr22	40044816	40335807	22q13.1	22q13.1	610740	TNRC6B, KIAA1093	Trinucleotide repeat-containing gene 6B	TNRC6B	23112	ENSG00000100354			Tnrc6b (MGI:2443730)
chr22	40346499	40387407	22q13.1	22q13.1	608222	ADSL	Adenylosuccinate lyase	ADSL	158	ENSG00000239900	ade(-)I; bifunctional	Adenylosuccinase deficiency, 103050 (3), Autosomal recessive	Adsl (MGI:103202)
chr22	40370561	40410288	22q13.1	22q13.1	610440	SGSM3, RUTBC3, MAP, RUSC3	Small G protein signaling modulator 3	SGSM3	27352	ENSG00000100359			Sgsm3 (MGI:1916329)
chr22	40410280	40636861	22q13	22q13.1-q13.2	606078	MKL1, AMKL, MAL	Megakaryoblastic leukemia 1 gene	MKL1	57591	ENSG00000196588	fusion with RBM15	Megakaryoblastic leukemia, acute (3)	Mkl1 (MGI:2384495)
chr22	40679177	40682813	22q13.3	22q13.2	601751	MCHR1, GPR24, SLC1	Melanin-concentrating hormone receptor 1	MCHR1	2847	ENSG00000128285			Mchr1 (MGI:2180756)
chr22	40769629	40819398	22q13	22q13.2	606795	SLC25A17, PMP34	Solute carrier family 25 (mitochondrial carrier), member 17 (peroxisomal membrane protein, 34kD)	SLC25A17	10478	ENSG00000100372			Slc25a17 (MGI:1342248)
chr22	40824534	40857007	22q13	22q13.2	606796	ST13, P48, HOP	Suppression of tumorigenicity 13	ST13	6767	ENSG00000100380			St13 (MGI:1917606)
chr22	40857080	40932818	22q13.31-q13.33	22q13.2	613553	XPNPEP3, APP3, NPHPL1	X-prolyl aminopeptidase 3	XPNPEP3	63929	ENSG00000196236		Nephronophthisis-like nephropathy 1, 613159 (3), Autosomal recessive	
chr22	40859548	40862125	22q13.2	22q13.2	611336	DNAJB7, DJ5, HSC3	DNAJ/HSP40 homolog, subfamily B, member 7	DNAJB7	150353	ENSG00000172404			Dnajb7 (MGI:1914012)
chr22	40951346	40973014	22q13.2	22q13.2	603814	RBX1, ROC1	RING-box 1	RBX1	9978	ENSG00000100387			Rbx1-ps (MGI:3710517)
chr22	41092585	41180076	22q13	22q13.2	602700	EP300, RSTS2	E1A-binding protein, 300kD	EP300	2033	ENSG00000100393		Colorectal cancer, somatic, 114500 (3); Rubinstein-Taybi syndrome 2, 613684 (3), Autosomal dominant	Ep300 (MGI:1276116)
chr22	41205191	41231270	22q13.3	22q13.2	611865	L3MBTL2, L3MBT	L3MBT-like 2	L3MBTL2	83746	ENSG00000100395			L3mbtl2 (MGI:2443584)
chr22	41229509	41241770	22q13.2	22q13.2	616236	CHADL	Chondroadherin-like	CHADL	150356	ENSG00000100399			Chadl (MGI:3036284)
chr22	41244776	41302212	22q13.2	22q13.2	602362	RANGAP1	GTPase-activating protein, RAN, 1	RANGAP1	5905	ENSG00000100401			Rangap1 (MGI:103071)
chr22	41367332	41399327	22q13	22q13.2	188595	TEF	Thyrotroph embryonic factor	TEF	7008	ENSG00000167074			Tef (MGI:98663)
chr22	41433487	41448229	22q13.1-q13.31	22q13.2	607396	TOB2, KIAA1663	Transducer of erbb2, 2	TOB2	10766	ENSG00000183864			Tob2 (MGI:1888525)
chr22	41459716	41468703	22q13.2	22q13.2	617846	PHF5A, SF3B7, SF3B14B	PHD finger protein 5A	PHF5A	84844	ENSG00000100410			Phf5a (MGI:2156864)
chr22	41468755	41528988	22q13.2	22q13.2	100850	ACO2, ICRD, OPA9	Aconitase, mitochondrial	ACO2	50	ENSG00000100412	distal to Ph1 break; mutation identified in 1 OPA9 family	Infantile cerebellar-retinal degeneration, 614559 (3), Autosomal recessive; ?Optic atrophy 9, 616289 (3), Autosomal recessive	Aco2 (MGI:87880)
chr22	41561009	41576665	22q13.2	22q13.2	617689	CSDC2, PIPPIN	Cold-shock domain-containing protein C2	CSDC2	27254	ENSG00000172346			Csdc2 (MGI:2146027)
chr22	41576885	41589866	22q13.1	22q13.2	601786	PMM1	Phosphomannomutase 1	PMM1	5372	ENSG00000100417			Pmm1 (MGI:1353418)
chr22	41598027	41621076	22q13.2	22q13.2	614637	DESI1, PPPDE2	Desumoylating isopeptidase 1	DESI1	27351	ENSG00000100418			Desi1 (MGI:106313)
chr22	41621162	41664047	22q11-q13	22q13.2	152690	XRCC6, G22P1, TLAA, Ku70	X-ray repair, complementing defecting, in chinese hamster, 6	XRCC6	2547	ENSG00000196419	tight linkage to CYP2D		Xrcc6 (MGI:95606)
chr22	41673932	41690491	22q13.2	22q13.2	601304	NHP2L1	Non-histone chromosome protein 2, S. cerevisiae, like 1	SNU13	4809	ENSG00000100138	previously assigned to 12q24.3 by FISH		Snu13 (MGI:893586)
chr22	41833078	41907307	22q13	22q13.2	600481	SREBF2	Sterol regulatory element binding transcription factor 2	SREBF2	6721	ENSG00000198911			Srebf2 (MGI:107585)
chr22	41900943	41901011	22q13.2	22q13.2	612156	MIR33A, MIRN33A	Micro RNA 33A	MIR33A	407039				
chr22	41906048	41915094	22q13.2	22q13.2	617329	SHISA8	Shisa family, member 8	SHISA8	440829	ENSG00000234965			Shisa8 (MGI:2146080)
chr22	41925031	41926816	22q13.1-q13.31	22q13.2	606269	TNFRSF13C, BAFFR, CVID4	Tumor necrosis factor receptor superfamily, member 13C	TNFRSF13C	115650	ENSG00000159958		Immunodeficiency, common variable, 4, 613494 (3), Autosomal recessive	Tnfrsf13c (MGI:1919299)
chr22	41927746	41947163	22q13.31	22q13.2	610152	PANE1, C22orf18	Proliferation-associated nuclear element 1	CENPM	79019	ENSG00000100162			Cenpm (MGI:1913820)
chr22	41969454	41998220	22q13.2	22q13.2	608314	SEPT3, SEP3	Septin 3	SEPT3	55964	ENSG00000100167			Sept3 (MGI:1345148)
chr22	41995102	42059401	22q13.2	22q13.2	610981	WBP2NL, PAWP	WWBP2 N-terminal-like protein	WBP2NL	164684	ENSG00000183066			Wbp2nl (MGI:1921966)
chr22	42058333	42070895	22q11	22q13.2	104170	NAGA	Acetylgalactosaminidase, alpha-N- (alpha-galactosidase B)	NAGA	4668	ENSG00000198951	proximal to Ph1 break	Kanzaki disease, 609242 (3), Autosomal recessive; Schindler disease, type I, 609241 (3), Autosomal recessive; Schindler disease, type III, 609241 (3), Autosomal recessive	Naga (MGI:1261422)
chr22	42074243	42079437	22q13.2	22q13.2	614240	FAM109B, SES2, IPIP27B	Family with sequence similarity 109, member B	PHETA2	150368	ENSG00000177096			Fam109b (MGI:2443609)
chr22	42079690	42084283	22q13.2	22q13.2	615588	SMDT1, EMRE, C22orf32	Single-pass membrane protein with aspartate-rich tail 1	SMDT1	91689	ENSG00000183172			Smdt1 (MGI:1916279)
chr22	42085525	42090954	22q13.1	22q13.2	602138	NDUFA6	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 6	NDUFA6	4700	ENSG00000184983	previously assigned to 21q22		Ndufa6 (MGI:1914380)
chr22	42126498	42130880	22q13.1	22q13.2	124030	CYP2D6, CPD6, P450DB1	Cytochrome P450, subfamily IID, polypeptide 6	CYP2D6	1565	ENSG00000100197		{Codeine sensitivity}, 608902 (3), Autosomal recessive; {Debrisoquine sensitivity}, 608902 (3), Autosomal recessive	
chr22	42160012	42283926	22q13.3	22q13.2	603107	TCF20, SPBP, AR1	Transcription factor 20	TCF20	6942	ENSG00000100207			Tcf20 (MGI:108399)
chr22	42380406	42438154	22q13.2	22q13.2	608740	NFAM1, CNAIP	NFAT activating protein with ITAM motif 1	NFAM1	150372	ENSG00000235568			Nfam1 (MGI:1921289)
chr22	42500578	42512559	22q13.2	22q13.2	607979	SERHL	Serine hydrolase-like	SERHL	94009				
chr22	42583720	42614961	22q13.2	22q13.2	611520	POLDIP3, SKAR, PDIP46	Polymerase delta-interacting protein 3	POLDIP3	84271	ENSG00000100227			Poldip3 (MGI:1921076)
chr22	42617839	42649398	22q13.31-qter	22q13.2	613213	CYB5R3, DIA1, B5R	Cytochrome b5 reductase 3	CYB5R3	1727	ENSG00000100243		Methemoglobinemia, type I, 250800 (3), Autosomal recessive; Methemoglobinemia, type II, 250800 (3), Autosomal recessive	
chr22	42692111	42721300	22q13.2	22q13.2	607922	A4GALT, P1PK	Alpha 1,4-galactosyltransferase	A4GALT	53947	ENSG00000128274		[Blood group, P1Pk system, P(2) phenotype], 111400 (3); [Blood group, P1Pk system, p phenotype], 111400 (3); NOR polyagglutination syndrome, 111400 (3)	A4galt (MGI:3512453)
chr22	42796525	42857401	22q13.2	22q13.2	612439	ARFGAP3	ADP-ribosylation factor GTPase-activating protein 3	ARFGAP3	26286	ENSG00000242247			Arfgap3 (MGI:1913501)
chr22	42869765	43016173	22q13.2	22q13.2	604960	PACSIN2	Protein kinase C and casein kinase substrate in neurons 2	PACSIN2	11252	ENSG00000100266			Pacsin2 (MGI:1345153)
chr22	43039515	43089427	22q13.1	22q13.2	608955	TTLL1, KIAA0173	tubulin tyrosine ligase-like protein 1	TTLL1	25809	ENSG00000100271			Ttll1 (MGI:2443047)
chr22	43110747	43129711	22q13.3	22q13.2	603392	BIK, NBK	Bcl2-interacting killer	BIK	638	ENSG00000100290			Bik (MGI:1206591)
chr22	43132205	43143396	22q13.31	22q13.2	614479	MCAT	Malonyl CoA:ACP acyltransferase, mitochondrial	MCAT	27349	ENSG00000100294			Mcat (MGI:2388651)
chr22	43151513	43163241	22q13.31	22q13.2	109610	TSPO, BZRP, PBR, PBS, BPBS	Translocator protein, 18kD (benzodiazepine receptor, peripheral type)	TSPO	706	ENSG00000100300			Tspo (MGI:88222)
chr22	43203222	43343387	22q13	22q13.2	611746	SCUBE1	Signal peptide-, CUB domain-, and EGF-like domains-containing protein 1	SCUBE1	80274	ENSG00000159307			Scube1 (MGI:1890616)
chr22	43412013	43507847	22q13.31	22q13.2	602112	MPPED1, C22orf1, 239AB	Metallophosphoesterase domain-containing protein 1	MPPED1	758	ENSG00000186732			Mpped1 (MGI:106316)
chr22	43824506	43862497	22q13.31	22q13.31	608359	SULT4A1, BRSTL1	Sulfotransferase family 4A, member 1	SULT4A1	25830	ENSG00000130540			Sult4a1 (MGI:1888971)
chr22	43879677	43892012	22q13.31	22q13.31	611589	PNPLA5, GS2L	Patatin-like phospholipase domain-containing 5	PNPLA5	150379	ENSG00000100341			Pnpla5 (MGI:1923022)
chr22	43923738	43947567	22q13	22q13.31	609567	PNPLA3, ADPN	Patatin-like phospholipase domain-containing protein 3	PNPLA3	80339	ENSG00000100344			Pnpla3 (MGI:2151796)
chr22	43955380	43996531	22q13.31	22q13.31	612058	SAMM50, SAM50	Sorting and assembly machinery component 50, S. cerevisiae, homolog of	SAMM50	25813	ENSG00000100347			Samm50 (MGI:1915903)
chr22	43999163	44169232	22q13.31	22q13.31	608121	PARVB	Parvin, beta	PARVB	29780	ENSG00000188677			Parvb (MGI:2153063)
chr22	44170227	44208468	22q13.31	22q13.31	608122	PARVG	Parvin, gamma	PARVG	64098	ENSG00000138964			Parvg (MGI:2158329)
chr22	44668546	44737680	22q13.31	22q13.31	609406	PRR5, PP610	Proline-rich protein 5	PRR5	55615	ENSG00000186654			Prr5 (MGI:1924714)
chr22	44752557	44862783	22q13.31	22q13.31	609405	ARHGAP8, BPGAP1	GTPase-activating protein, RHO, 8	ARHGAP8	23779	ENSG00000241484			Arhgap8 (MGI:1920417)
chr22	44881161	45009927	22q13.31	22q13.31	616727	PHF21B, PHF4, BHC80L	PHD finger protein 21B	PHF21B	112885	ENSG00000056487			Phf21b (MGI:2443812)
chr22	45163844	45188010	22q13.3	22q13.31	604646	NUP50, NPAP60L, NPAP60	Nucleoporin, 50 kD	NUP50	10762	ENSG00000093000			Nup50 (MGI:1351502)
chr22	45284986	45295873	22q13.31	22q13.31	611559	UPK3A, UPK3, UPIII	Uroplakin 3A	UPK3A	7380	ENSG00000100373			Upk3a (MGI:98914)
chr22	45502838	45601133	22q13.3	22q13.31	135820	FBLN1	Fibulin 1	FBLN1	2192	ENSG00000077942		Synpolydactyly, 3/3'4, associated with metacarpal and metatarsal synostoses, 608180 (4), Autosomal dominant	Fbln1 (MGI:95487)
chr22	45671797	45845306	22q13	22q13.31	611150	ATXN10, SCA10	Ataxin 10	ATXN10	25814	ENSG00000130638	ATTCTn repeat in intron 9	Spinocerebellar ataxia 10, 603516 (3), Autosomal dominant	Atxn10 (MGI:1859293)
chr22	45920361	45977127	22q13	22q13.31	601967	WNT7B	Wingless-type MMTV integration site family, member-7B	WNT7B	7477	ENSG00000188064			Wnt7b (MGI:98962)
chr22	46112748	46112821	22q13.31	22q13.31	612143	MIRLET7A3, LET7A3, MIRNLET7A3	Micro RNA let7a3	MIRLET7A3	406883				
chr22	46113685	46113767	22q13	22q13.31	611249	MIRLET7B, LET7B, MIRNLET7B	Micro RNA Let7B	MIRLET7B	406884				
chr22	46150533	46243755	22q12-q13.1	22q13.31	170998	PPARA, PPAR	Peroxisome proliferator-activated receptor-alpha	PPARA	5465	ENSG00000186951		{Hyperapobetalipoproteinemia, susceptibility to} (3)	Ppara (MGI:104740)
chr22	46255662	46263321	22q13.3	22q13.31	604670	PKDREJ	Polycystic kidney disease and sea urchin REJ homolog-like	PKDREJ	10343	ENSG00000130943			Pkdrej (MGI:1338786)
chr22	46335400	46357339	22q13	22q13.31	610230	TRMU, MTO2	tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase	TRMU	55687	ENSG00000100416		{Deafness, mitochondrial, modifier of}, 580000 (3), Mitochondrial; Liver failure, transient infantile, 613070 (3), Autosomal recessive	Trmu (MGI:1919276)
chr22	46360833	46537501	22q13.3	22q13.31	604523	CELSR1	Cadherin EGF LAG seven-pass G-type receptor 1	CELSR1	9620	ENSG00000075275			Celsr1 (MGI:1100883)
chr22	46576016	46682754	22q13.31	22q13.31	613691	GRAMD4, KIAA0767, DIP	Gram domain-containing protein 4	GRAMD4	23151	ENSG00000075240			Gramd4 (MGI:2676308)
chr22	46684409	46738254	22q13	22q13.31	610307	CERK, KIAA1646	Ceramide kinase	CERK	64781	ENSG00000100422			Cerk (MGI:2386052)
chr22	46762616	47224974	22q13.31	22q13.31	616879	TBC1D22A, C22orf4	TBC1 domain family, member 22A	TBC1D22A	25771	ENSG00000054611			Tbc1d22a (MGI:1289265)
chr22	48489459	48751934	22q13.32	22q13.32	617499	FAM19A5, TAFA5	Family with sequence similarity 19, member A5, CC motif chemokine-like	FAM19A5	25817	ENSG00000219438			Fam19a5 (MGI:2146182)
chr22	49773277	49827926	22q13	22q13.33	604589	BRL	BR140-like gene	BRD1	23774	ENSG00000100425			Brd1 (MGI:1924161)
chr22	49853848	49890077	22q13.33	22q13.33	612552	ZBED4, KIAA0637	Zinc finger BED domain-containing protein 4	ZBED4	9889	ENSG00000100426			
chr22	49860162	49918468	22q13.33	22q13.33	607144	ALG12, CDG1G	Dolichyl-P-mannose:Man-7-GlcNAc-2-PP-dolichyl-alpha-6- mannosyltransferase	ALG12	79087	ENSG00000182858		Congenital disorder of glycosylation, type Ig, 607143 (3)	Alg12 (MGI:2385025)
chr22	49960494	49964071	22q13.33	22q13.33	610580	PIM3	Oncogene PIM3	PIM3	415116	ENSG00000198355			Pim3 (MGI:1355297)
chr22	49993577	50013826	22q13	22q13.33	613414	IL17REL	Interleukin 17 receptor E-like	IL17REL	400935	ENSG00000188263			
chr22	50059390	50085928	22q13.33	22q13.33	605908	MLC1, LVM, VL	MLC1 gene	MLC1	23209	ENSG00000100427		Megalencephalic leukoencephalopathy with subcortical cysts, 604004 (3), Autosomal recessive	Mlc1 (MGI:2157910)
chr22	50090005	50161704	22q13.33	22q13.33	605794	MOV10L1	Mov10-like 1	MOV10L1	54456	ENSG00000073146			Mov10l1 (MGI:1891384)
chr22	50170730	50180294	22q13	22q13.33	608421	PANX2, PX2	Pannexin 2	PANX2	56666	ENSG00000073150			Panx2 (MGI:1890615)
chr22	50200978	50217615	22q13.33	22q13.33	607917	SELENOO, SELO	Selenoprotein O	SELENOO	83642	ENSG00000073169			Selenoo (MGI:1919007)
chr22	50217688	50245027	22q13.33	22q13.33	610053	TUBGCP6, GCP6, KIAA1669, MCCRP1	Tubulin-gamma complex-associated protein 6	TUBGCP6	85378	ENSG00000128159		Microcephaly and chorioretinopathy, autosomal recessive, 1, 251270 (3), Autosomal recessive	Tubgcp6 (MGI:2146071)
chr22	50252900	50261809	22q13.3	22q13.33	602399	MAPK12, SAPK3, ERK3	Mitogen-activated protein kinase 12 (Stress-activated protein kinase-3)	MAPK12	6300	ENSG00000188130			Mapk12 (MGI:1353438)
chr22	50274978	50307636	22q13.31-q13.33	22q13.33	604293	PLXNB2, MM1	Plexin B2	PLXNB2	23654	ENSG00000196576			Plxnb2 (MGI:2154239)
chr22	50343316	50445089	22q13.33	22q13.33	610877	SAPS2, PP6R2, KIAA0685	SAPS domain family, member 2	PPP6R2	9701	ENSG00000100239			Ppp6r2 (MGI:1918724)
chr22	50444999	50475070	22q13.33	22q13.33	603560	SBF1, MTMR5, CMT4B3	SET-binding factor 1 (myotubularin-related protein 5)	SBF1	6305	ENSG00000100241		Charcot-Marie-Tooth disease, type 4B3, 615284 (3), Autosomal recessive	Sbf1 (MGI:1925230)
chr22	50508215	50524779	22q13.33	22q13.33	611230	NCAPH2, CAPH2	Non-SMC condensin II complex subunit H2	NCAPH2	29781	ENSG00000025770			Ncaph2 (MGI:1289164)
chr22	50523567	50526438	22q13	22q13.33	604272	SCO2, CEMCOX1, MYP6	SCO2 cytochrome c oxidase assembly protein	SCO2	9997	ENSG00000130489		Cardioencephalomyopathy, fatal infantile, due to cytochrome c oxidase deficiency 1, 604377 (3), Autosomal recessive; Myopia 6, 608908 (3), Autosomal dominant	Sco2 (MGI:3818630)
chr22	50525751	50530084	22q13.32-qter	22q13.33	131222	TYMP, ECGF1, MNGIE, PDECGF, MEDPS1, MTDPS1	Thymidine phosphorylase	TYMP	1890	ENSG00000025708		Mitochondrial DNA depletion syndrome 1 (MNGIE type), 603041 (3), Autosomal recessive	Tymp (MGI:1920212)
chr22	50551111	50562951	22q13.33	22q13.33	615775	SYCE3	Synaptonemal complex central element protein 3	SYCE3	644186	ENSG00000217442			Syce3 (MGI:1922709)
chr22	50568860	50578666	22q13	22q13.33	601987	CPT1B	Carnitine palmitoyltransferase I, muscle	CPT1B	1375	ENSG00000205560			Cpt1b (MGI:1098297)
chr22	50578957	50582998	22q13	22q13.33	612395	CHKB, CHKL, CKEKB, EKB, MDCMC	Choline kinase, beta	CHKB	1120	ENSG00000100288		Muscular dystrophy, congenital, megaconial type, 602541 (3), Autosomal recessive	Chkb (MGI:1328313)
chr22	50600684	50613980	22q13	22q13.33	607755	MAPK8IP2, JIP2, IB2	Mitogen-activated protein kinase 8-interacting protein 2	MAPK8IP2	23542	ENSG00000008735			Mapk8ip2 (MGI:1926555)
chr22	50622753	50628172	22q13.31-qter	22q13.33	607574	ARSA	Arylsulfatase A	ARSA	410	ENSG00000100299		Metachromatic leukodystrophy, 250100 (3), Autosomal recessive	Arsa (MGI:88077)
chr22	50674641	50733211	22q13.3	22q13.33	606230	SHANK3, PSAP2, PROSAP2, KIAA1650, DEL22q13.3, SCZD15	SH3 and multiple ankyrin repeat domains 3	SHANK3	85358	ENSG00000251322		Phelan-McDermid syndrome, 606232 (3), Autosomal dominant; {Schizophrenia 15}, 613950 (3)	Shank3 (MGI:1930016)
chr22	50738223	50745298	22q13.33	22q13.33	102480	ACR	Acrosin	ACR	49	ENSG00000100312		?Male infertility due to acrosin deficiency, 102480 (2)	Acr (MGI:87884)
chr22	50767491	50783704	22q13.3	22q13.33	605413	RABL2B	RAB-like 2B	RABL2B	11158	ENSG00000079974			
chr22	0	50818468	Chr.22		107260	MSK41	Antigen MSK41 identified by monoclonal antibody E3						
chrX	0	24900000	Xp22		300310	AGMX2, XLA2, IMD6	Agammaglobulinemia, X-linked 2 (with growth hormone deficiency)	AGMX2	179			Agammaglobulinemia, X-linked 2, 300310 (2), X-linked	
chrX	0	24900000	Xp22		304050	AIC	Aicardi syndrome	AIC	192		?in p22.31 with FDH as contiguous gene syndrome	Aicardi syndrome, 304050 (2), X-linked dominant	
chrX	0	24900000	Xp22		300870	ANIB5	Aneurysm, intracranial berry, 5					Aneurysm, intracranial berry, 5, 300870 (2)	
chrX	0	6100000	Xpter-p22.32		301780	ARSC2	Arylsulfatase C, f form	ARSC2	413		probably close to STS = ARSC1, or s form		
chrX	0	9600000	Xp22.3		300211	EMWX	Episodic muscle weakness, X-linked	EMWX	10118			Episodic muscle weakness, X-linked, 300211 (2)	
chrX	0	9600000	Xp22.3		300406	FGS3	FG syndrome 3	FGS3	93985			FG syndrome 3, 300406 (2)	
chrX	0	6100000	Xpter-p22.32		300221	HDPA	Hodgkin disease, susceptibility, pseudoautosomal		50829			{Hodgkin disease susceptibility, pseudoautosomal}, 300221 (2)	
chrX	0	9600000	Xp22.3		300778	LECD	Corneal dystrophy, Lisch epithelial		100302509		max lod between DXYS233 and DXYS228X	Corneal dystrophy, Lisch epithelial, 300778 (2), X-linked dominant	
chrX	0	24900000	Xp22		300273	MNG2	Multinodular goiter-2		59081			Goiter, multinodular, 2, 300273 (2), X-linked dominant	
chrX	0	9600000	Xp22.3		300428	MRX2	Mental retardation, X-linked, 2					Mental retardation, X-linked 2, 300428 (2), X-linked	
chrX	0	9600000	Xp22.3		300650	OASD	Ocular albinism and sensorineural deafness	OASD	4941		?allelic to OA1	Ocular albinism with sensorineural deafness, 300650 (2), X-linked	
chrX	0	4400000	Xp22.33		313000	VSPA	Visuospatial/perceptual abilities		59332			Turner syndrome-associated neurocognitive phenotype, 313000 (2), ?X-linked recessive; [Visuospatial/perceptual abilities], 313000 (2), ?X-linked recessive	
chrX	0	6100000	Xpter-p22.32		314700	XG	Xg blood group				nonlyonizing; spans pseudoautosomal boundary; XGPY on Yq11.21	[Blood group, XG system] (3)	
chrX	276323	303355	Xp22.33	Xp22.33	300974	PLCXD1	Phospholipase C, phosphatidylinositol-specific, X domain-containing protein 1	PLCXD1	55344	ENSG00000182378	in pseudoautosomal region		
chrX	303351	318818	Xp22.33	Xp22.33	300124	GTPBP6, PGPL	GTP-binding protein 6	GTPBP6	8225	ENSG00000178605			Gtpbp6 (MGI:1306825)
chrX	333932	387326	Xp22.33	Xp22.33	300339	PPP2R3B, PR48	Protein phosphatase 2, regulatory subunit B-double prime, beta	PPP2R3B	28227	ENSG00000167393			
chrX	624343	659410	Xpter-p22.32	Xp22.33	312865	SHOX, GCFX, SS, PHOG	Short stature homeo box	SHOX	6473	ENSG00000185960	pseudoautosomal; ?gene causing short stature in Turner syndrome	Langer mesomelic dysplasia, 249700 (3), Autosomal recessive; Leri-Weill dyschondrosteosis, 127300 (3), Autosomal dominant; Short stature, idiopathic familial, 300582 (3)	
chrX	1190436	1212761	Xp22.3	Xp22.33	300357	CRLF2, CRL2	Cytokine receptor-like factor 2	CRLF2	64109	ENSG00000205755	pseudoautosomal		Crlf2 (MGI:1889506)
chrX	1268799	1325096	Xp22.32	Xp22.33	306250	CSF2RA, SMDP4	Colony-stimulating factor-2 receptor, alpha, low-affinity, granulocyte-macrophage	CSF2RA	1438	ENSG00000198223	order in PAR: pter-CSF2RA-IL3RA-ANT3-ASMT-MIC2-cen	Surfactant metabolism dysfunction, pulmonary, 4, 300770 (3)	Csf2ra (MGI:1339754)
chrX	1336573	1382688	Xp22.3	Xp22.33	308385	IL3RA	Interleukin-3 receptor, alpha subunit	IL3RA	3563	ENSG00000185291	same 190kb segment as CSF2RA		Il3ra (MGI:96553)
chrX	1386151	1392145	Xp22.32	Xp22.33	300151	SLC25A6, ANT3	Solute carrier family 25 (mitochondrial carrier), member 6 (adenine nucleotide translocator-3, liver)	SLC25A6	293	ENSG00000169100	1st intron ~1.3Mb from Xqter; nonlyonized		
chrX	1403138	1453793	Xpter-p22.32	Xp22.33	300162	ASMTLX, ASTML	Acetylserotonin methyltransferase-like	ASMTL	8623	ENSG00000169093			
chrX	1462571	1537487	Xp22.3	Xp22.33	300525	P2RY8, P2Y8	Pyrimidinergic receptor P2Y, G protein-coupled, 8	P2RY8	286530	ENSG00000182162			
chrX	1591592	1602519	Xp22.32	Xp22.33	312095	AKAP17A, SFRS17A, DXYS155E, XE7	A kinase (PRKA) anchor protein 17A	AKAP17A	8227	ENSG00000197976	nonlyonizing		
chrX	1595454	1643080	Xpter-p22.32	Xp22.33	300015	ASMT, HIOMT	Acetylserotonin methyltransferase	ASMT	438	ENSG00000196433	pseudoautosomal		
chrX	2486413	2500966	Xp22.33	Xp22.33	300178	ZBED1, ALTE, KIAA0785, TRAMP	Zinc finger BED domain-containing protein 1	ZBED1	9189	ENSG00000214717			
chrX	2691132	2741308	Xpter-p22.32	Xp22.33	313470	CD99, MIC2, MIC2X	CD99 antigen (MIC2 (monoclonal antibody 12E7))	CD99	4267	ENSG00000002586	distal to STS		
chrX	2751103	2816499	Xp22.33	Xp22.33	300879	XG, PBDX	XG glycoprotein	XG	7499	ENSG00000124343			
chrX	2828711	2882819	Xp22.3	Xp22.33	300198	GYG2, GN2	Glycogenin 2	GYG2	8908	ENSG00000056998			
chrX	2903969	2929374	Xp22.3	Xp22.33	300002	ARSD	Arylsulfatase D	ARSD	414	ENSG00000006756			
chrX	2934631	2968309	Xp22.3	Xp22.33	300180	ARSE, CDPX1, CDPXR	Arylsulfatase E	ARSE	415	ENSG00000157399	CDPX1 in contiguous gene syndrome with STS	Chondrodysplasia punctata, X-linked recessive, 302950 (3), X-linked recessive	
chrX	3006612	3033384	Xp22.3	Xp22.33	300586	ARSH	Arylsulfatase H	ARSH	347527	ENSG00000205667			
chrX	3040233	3112728	Xp22.3	Xp22.33	300003	ARSF	Arylsulfatase F	ARSF	416	ENSG00000062096			
chrX	3308564	3346642	Xp22.33	Xp22.33	300938	MXRA5	Matrix remodeling-associated protein 5	MXRA5	25878	ENSG00000101825			
chrX	3604342	3713633	Xp22.3	Xp22.33	300083	PRKX	Protein kinase, X-linked	PRKX	5613	ENSG00000183943			Prkx (MGI:1309999)
chrX	4400000	6100000	Xp22.32		314705	XGR	XG/MIC2 regulator	XGR	7501		?between XG and MIC2		
chrX	5890025	6228881	Xp22.33	Xp22.32-p22.31	300427	NLGN4, KIAA1260, AUTSX2, ASPGX2	Neuroligin 4	NLGN4X	57502	ENSG00000146938		{Asperger syndrome susceptibility, X-linked 2}, 300497 (3), Isolated cases, X-linked, Multifactorial; {Autism susceptibility, X-linked 2}, 300495 (3), Isolated cases, X-linked, Multifactorial; Mental retardation, X-linked, 300495 (3), Isolated cases, X-linked, Multifactorial	
chrX	6533617	6535117	Xp22.3	Xp22.31	300533	VCX3A, VCX8R, VCXA	Variably charged, X chromosome, 3A	VCX3A	51481	ENSG00000169059			
chrX	6768839	7148189	Xp22.32	Xp22.31	306480	HDHD1A, DXF68S1E, GS1	Haloacid dehalogenase-like hydrolase domain-containing 1A	PUDP	8226	ENSG00000130021	escapes X-inactivation; 100kb telomeric to STS		Pudp (MGI:1914615)
chrX	7147251	7354642	Xp22.32	Xp22.31	300747	STS, ARSC1, ARSC, SSDD, XLI	Steroid sulfatase, microsomal (arylsulfatase C, isozyme S)	STS	412	ENSG00000101846	nonlyonizing	Ichthyosis, X-linked, 308100 (3), X-linked recessive	
chrX	7842261	7844142	Xp22.3	Xp22.31	300229	VCX, VCXB1, VCX10R	Variably charged, X chromosome	VCX	26609	ENSG00000182583			
chrX	7898762	7928586	Xp22.3	Xp22.31	300102	DXS1283E	GS2 gene	PNPLA4	8228	ENSG00000006757			
chrX	8169943	8171266	Xp22.3	Xp22.31	300532	VCX2, VCX2R, VCXB	Variably charged, X chromosome, 2	VCX2	51480	ENSG00000177504			
chrX	8464829	8466509	Xp22.31	Xp22.31	300981	VCS3B, VCXC	Variably charged, X chromosome, 3B	VCX3B	425054	ENSG00000205642			
chrX	8528873	8732186	Xp22.3	Xp22.31	300836	KAL1, KMS, ADMLX, HH1	Kallmann syndrome-1 sequence (anosmin-1)	ANOS1	3730	ENSG00000011201	with ichthyosis in probable microdeletion syndrome	Hypogonadotropic hypogonadism 1 with or without anosmia (Kallmann syndrome 1), 308700 (3), X-linked recessive	
chrX	8790794	8801382	Xp22.33-p22.32	Xp22.31	300477	FAM9A	Family with sequence similarity 9, member A	FAM9A	171482	ENSG00000183304	pseudogene on Xq28, Yp11.31, 1p36.12, 8p11.1		
chrX	9024231	9034126	Xp22.32	Xp22.31	300478	FAM9B	Family with sequence similarity 9, member B	FAM9B	171483	ENSG00000177138			
chrX	9463294	9719739	Xp22.3	Xp22.3-p22.2	300196	TBL1X, TBL1	Transducin-beta-like 1, X-linked	TBL1X	6907	ENSG00000101849			Tbl1x (MGI:1336172)
chrX	9600000	17400000	Xp22.2		302801	CMTX2	Charcot-Marie-Tooth disease, X-linked recessive, 2	CMTX2	1253			Charcot-Marie-Tooth neuropathy, X-linked recessive, 2, 302801 (2), X-linked recessive	
chrX	9600000	17400000	Xp22.2		305435	HBFQTL3, FCP1, FCPX, FCP	Fetal hemoglobin quantitative trait locus 3	FCP1	2221			Fetal hemoglobin quantitative trait locus 3, 305435 (2), X-linked	
chrX	9600000	17400000	Xp22.2		300355	MRX73	Mental retardation, X-linked 73	MRX73	23694		between DXS8019 and DXS365	Mental retardation, X-linked 73, 300355 (2), X-linked recessive	
chrX	9725412	9786259	Xp22.3	Xp22.2	300808	GPR143, OA1, NYS6	G protein-coupled receptor 143	GPR143	4935	ENSG00000101850	linked to XG	Nystagmus 6, congenital, X-linked, 300814 (3); Ocular albinism, type I, Nettleship-Falls type, 300500 (3), X-linked	Gpr143 (MGI:107193)
chrX	9786405	9949442	Xp22.3	Xp22.2	300103	SHROOM2, APXL	Shroom family member 2	SHROOM2	357	ENSG00000146950			Shroom2 (MGI:107194)
chrX	10156944	10237659	Xp22.3	Xp22.2	302910	CLCN4, MRX49, MRX15	Chloride channel-4	CLCN4	1183	ENSG00000073464		Mental retardation, X-linked 49/15, 300114 (3), X-linked recessive	Clcn4 (MGI:104571)
chrX	10445309	10833689	Xp22	Xp22.2	300552	MID1, OGS1, BBBG1, FXY, OSX	Midline-1	MID1	4281	ENSG00000101871	type II defect on chr.22	Opitz GBBB syndrome, type I, 300000 (3), X-linked recessive	Mid1 (MGI:1100537)
chrX	11111285	11123085	Xp22	Xp22.2	300056	HCCS, MCOPS7, LSDMCA1	Holocytochrome c synthase (cytochrome c heme-lyase)	HCCS	3052	ENSG00000004961		Linear skin defects with multiple congenital anomalies 1, 309801 (3), X-linked dominant	Hccs (MGI:106911)
chrX	11137542	11665700	Xp22.3	Xp22.2	300118	ARHGAP6	Rho GTPase-activating protein-6	ARHGAP6	395	ENSG00000047648			Arhgap6 (MGI:1196332)
chrX	11293412	11304148	Xp22.3-p22.1	Xp22.2	300391	AMELX, AMG, AIH1, AMGX, AI1E	Amelogenin	AMELX	265	ENSG00000125363	also Y	Amelogenesis imperfecta, type 1E, 301200 (3), X-linked dominant	
chrX	11758158	11775752	Xp22.3	Xp22.2	300609	MSL3L1	Male-specific lethal 3-like 1	MSL3	10943	ENSG00000005302			Msl3 (MGI:1341851)
chrX	12137328	12724522	Xp22.2	Xp22.2	300838	FRMPD4, PRESO, KIAA0316, MRX104	FERM and PDZ domains-containing protein 4	FRMPD4	9758	ENSG00000169933		Mental retardation, X-linked 104, 300983 (3), X-linked recessive	Frmpd4 (MGI:3042378)
chrX	12791354	12824226	Xp22.3-p22.2	Xp22.2	311860	PRPS2	Phosphoribosyl pyrophosphate synthetase-2	PRPS2	5634	ENSG00000101911	between STS and ZFX		Prps2 (MGI:97776)
chrX	12867082	12890360	Xp22.3-p22.2	Xp22.2	300365	TLR7	Toll-like receptor 7	TLR7	51284	ENSG00000196664	centromeric to TLR8		Tlr7 (MGI:2176882)
chrX	12906619	12923168	Xp22.3-p22.2	Xp22.2	300366	TLR8	Toll-like receptor 8	TLR8	51311	ENSG00000101916	16kb telomeric to TLR7		Tlr8 (MGI:2176887)
chrX	12975106	12977226	Xq21.3-q22	Xp22.2	300159	TMSB4X, TMSB4, TB4X, PTMB4	Thymosin, beta-4, X chromosome	TMSB4X	7114	ENSG00000205542			
chrX	13035616	13044797	Xp22.31	Xp22.2	300479	FAM9C	Family with sequence similarity 9, member C	FAM9C	171484	ENSG00000187268			
chrX	13318646	13320398	Xp22.2	Xp22.2	300920	ATXN3L	Ataxin 3-like	ATXN3L	92552	ENSG00000123594			
chrX	13569574	13633574	Xp22	Xp22.2	300239	EGFL6	Epidermal growth factor-like 6	EGFL6	25975	ENSG00000198759			Egfl6 (MGI:1858599)
chrX	13689120	13709824	Xp22.2	Xp22.2	300284	RAB9	RAS-associated protein RAB9	RAB9A	9367	ENSG00000123595			Rab9 (MGI:1890695)
chrX	13712241	13734634	Xp22.2-p22.1	Xp22.2	300202	TRAPPC2, SEDL, SEDT	Trafficking protein particle complex 2 (sedlin)	TRAPPC2	6399	ENSG00000196459		Spondyloepiphyseal dysplasia tarda, 313400 (3), X-linked recessive	Trappc2 (MGI:1913476)
chrX	13734712	13773977	Xp22.3-p22.2	Xp22.2	300170	OFD1, CXorf5, SGBS2, JBTS10, RP23	OFD1 protein	OFD1	8481	ENSG00000046651	mutation identified in 1 RP23 family	Joubert syndrome 10, 300804 (3), X-linked recessive; Orofaciodigital syndrome I, 311200 (3), X-linked dominant; ?Retinitis pigmentosa 23, 300424 (3), X-linked recessive; Simpson-Golabi-Behmel syndrome, type 2, 300209 (3), X-linked recessive	Ofd1 (MGI:1350328)
chrX	13770921	13938823	Xp22.2	Xp22.2	300051	GPM6B, M6B	Glycoprotein M6B	GPM6B	2824	ENSG00000046653			Gpm6b (MGI:107672)
chrX	14002493	14029917	Xp22.2	Xp22.2	300962	GEMIN8, FAM51A1	GEM-associated protein 8	GEMIN8	54960	ENSG00000046647			Gemin8 (MGI:2384300)
chrX	14529297	14731811	Xp22.1-p21.2	Xp22.2	305990	GLRA2	Glycine receptor, alpha-2 polypeptide	GLRA2	2742	ENSG00000101958			Glra2 (MGI:95748)
chrX	14690862	14873254	Xp22.31	Xp22.2	300515	FAAP95, FAAP90, FLJ34064, FANCB	Fanconi anemia-associated polypeptide, 95kD	FANCB	2187	ENSG00000181544		Fanconi anemia, complementation group B, 300514 (3)	Fancb (MGI:2448558)
chrX	15243986	15270475	Xp22.2	Xp22.2	300890	ASB9	Ankyrin repeat- and SOCS box-containing protein 9	ASB9	140462	ENSG00000102048			Asb9 (MGI:1916549)
chrX	15281696	15315623	Xp22.31	Xp22.2	300626	ASB11	Ankyrin repeat- and SOCS box-containing protein 11	ASB11	140456	ENSG00000165192			Asb11 (MGI:1916104)
chrX	15319450	15335553	Xp22.1	Xp22.2	311770	PIGA, PNH1, MCAHS2	Phosphatidylinositol glycan, class A	PIGA	5277	ENSG00000165195	pseudogene on chr.12	Multiple congenital anomalies-hypotonia-seizures syndrome 2, 300868 (3), X-linked recessive; Paroxysmal nocturnal hemoglobinuria, somatic, 300818 (3)	Piga (MGI:99461)
chrX	15345590	15384412	Xp22.31	Xp22.2	300091	FIGF, VEGFD	c-fos induced growth factor (vascular endothelial growth factor D)	VEGFD	2277	ENSG00000165197			Vegfd (MGI:108037)
chrX	15384798	15493587	Xp22.2	Xp22.2	300931	PIR	Pirin	PIR	8544	ENSG00000087842			Pir (MGI:1916906)
chrX	15494519	15602068	Xp22	Xp22.2	300335	ACE2, ACEH	Angiotensin I converting enzyme 2	ACE2	59272	ENSG00000130234			Ace2 (MGI:1917258)
chrX	15500776	15556528	Xp22.2	Xp22.2	300101	BMX	BMX non-receptor tyrosine kinase	BMX	660	ENSG00000102010			Bmx (MGI:1101778)
chrX	15627315	15675623	Xp22	Xp22.2	300631	TMEM27, NX17	Transmembrane protein 27 (collectrin)	CLTRN	57393	ENSG00000147003			Tmem27 (MGI:1926234)
chrX	15738280	15787624	Xp22.1	Xp22.2	300230	CA5B	Carbonic anhydrase VB, mitochondrial	CA5B	11238	ENSG00000169239			Car5b (MGI:1926249)
chrX	15785715	15787588	Xp22.2	Xp22.2	300165	INE2	Inactivation escape 2	INE2	8551				
chrX	15790450	15826806	Xp22.1	Xp22.2	300028	ZRSR2, U2AF1RS2	Zinc finger-, CCCH domain-, and RNA-binding motif-containing serine/arginine-rich protein 2	ZRSR2	8233	ENSG00000169249			Zrsr2 (MGI:103287)
chrX	15825805	15855013	Xp22	Xp22.2	300629	AP1S2, MRX59, MRXSF, MRXS21, MRXS5, PGS	Adaptor-related protein complex 1, sigma-2 subunit	AP1S2	8905	ENSG00000182287		Mental retardation, X-linked syndromic 5, 304340 (3), X-linked recessive	Ap1s2 (MGI:1889383)
chrX	16123300	16153517	Xp22.3-p21.2	Xp22.2	305670	GRPR	Gastrin-releasing peptide receptor	GRPR	2925	ENSG00000126010			Grpr (MGI:95836)
chrX	16167480	16172393	Xp21.3	Xp22.2	300763	MAGEB17	Melanoma antigen, family B, 17	MAGEB17	645864	ENSG00000182798			Gm5071,Gm5072 (MGI:3645128,MGI:3643982)
chrX	16587998	16712978	Xp22	Xp22.2	300380	CTPS2	Cytidine 5-prime triphosphate synthetase 2	CTPS2	56474	ENSG00000047230			Ctps2 (MGI:1933185)
chrX	16649786	16654673	Xp	Xp22.2	302020	CALB3, CABP9K	Calbindin 3 (vitamin D-dependent calcium-binding protein)	S100G	795	ENSG00000169906			S100g (MGI:104528)
chrX	16786431	16844518	Xp22.1	Xp22.2	300677	CXorf15, FIAT	Chromosome X open reading frame 15	TXLNG	55787	ENSG00000086712			Txlng (MGI:3590652)
chrX	16844649	16870410	Xp22.2	Xp22.2	300825	RBBP7	Retinoblastoma-binding protein 7	RBBP7	5931	ENSG00000102054			Rbbp7 (MGI:1194910)
chrX	16946690	17220723	Chr.X	Xp22.2	300317	REPS2, POB1	RALBP1-associated EPS domain-containing protein 2	REPS2	9185	ENSG00000169891			Reps2 (MGI:2663511)
chrX	17375419	17735993	Xp22.13	Xp22.2-p22.1	300457	NHS, CXN, CTRCT40	NHS gene	NHS	4810	ENSG00000188158		Cataract 40, X-linked, 302200 (3), X-linked; Nance-Horan syndrome, 302350 (3), X-linked dominant	Nhs (MGI:2684894)
chrX	17400000	37800000	Xp22.13-p21.1		300148	MEHMO	MEHMO syndrome (Mental retardation, epileptic seizures, hypogonadism and hypogenitalism, microcephaly, and obesity)					MEHMO syndrome, 300148 (2)	
chrX	17737448	17754987	Xp22.2-p22.1	Xp22.13	300227	SCML1	Sex comb on midleg, Drosophila, homolog-like 1	SCML1	6322	ENSG00000047634			
chrX	17800048	17861345	Xp22	Xp22.13	300217	RAI2	Retinoic acid-induced 2	RAI2	10742	ENSG00000131831			Rai2 (MGI:1344378)
chrX	18239312	18355088	Xp22	Xp22.13	300208	SCML2	Sex comb on midleg, Drosophila, homolog-like 2	SCML2	10389	ENSG00000102098			
chrX	18425604	18653628	Xp22	Xp22.13	300203	CDKL5, STK9, ISSX, EIEE2	Cyclin-dependent kinase-like 5 (serine/threonine protein kinase 9)	CDKL5	6792	ENSG00000008086		Epileptic encephalopathy, early infantile, 2, 300672 (3), X-linked dominant	Cdkl5 (MGI:1278336)
chrX	18639687	18672102	Xp22.2-p22.1	Xp22.13	300839	RS1, XLRS1	Retinoschisin	RS1	6247	ENSG00000102104	25cM from XG	Retinoschisis, 312700 (3), X-linked recessive	Rs1 (MGI:1336189)
chrX	18675908	18827920	Xp22.2-p22.1	Xp22.13	300109	PPEF1	Protein phosphatase, EF hand calcium-binding domain 1	PPEF1	5475	ENSG00000086717			Ppef1 (MGI:1097157)
chrX	18892297	18984361	Xp22.2-p22.1	Xp22.13	300798	PHKA2, PHK, XLG, PYKL, GSD9A	Phosphorylase kinase, liver, alpha-2 subunit	PHKA2	5256	ENSG00000044446		Glycogen storage disease, type IXa1, 306000 (3), X-linked recessive; Glycogen storage disease, type IXa2, 306000 (3), X-linked recessive	Phka2 (MGI:97577)
chrX	18989306	19122955	Xp21.3	Xp22.13	300572	ADGRG2, GPR64, HE6, CBAVDX	Adhesion G protein-coupled receptor G2	ADGRG2	10149	ENSG00000173698		Vas deferens, congenital bilateral aplasia of, X-linked, 300985 (3), X-linked	Adgrg2 (MGI:2446854)
chrX	19343892	19361706	Xp22.2-p22.1	Xp22.12	300502	PDHA1, PHE1A, PDHAD	Pyruvate dehydrogenase, E1-alpha polypeptide-1	PDHA1	5160	ENSG00000131828		Pyruvate dehydrogenase E1-alpha deficiency, 312170 (3), X-linked dominant	Pdha1 (MGI:97532)
chrX	19360057	19515260	Xp22.12	Xp22.12	300820	MAP3K15, ASK3	Mitogen-activated protein kinase kinase kinase 15	MAP3K15	389840	ENSG00000180815			Map3k15 (MGI:2448588)
chrX	19533964	19887625	Xp22.1-p21.3	Xp22.12	300374	SH3KBP1, CIN85	SH3-domain kinase-binding protein 1	SH3KBP1	30011	ENSG00000147010			Sh3kbp1 (MGI:1889583)
chrX	20124517	20141847	Chr.X	Xp22.12	300186	EIF1A, EIF4C, EIF1AX	Eukaryotic translation initiation factor 1A	EIF1AX	1964	ENSG00000173674			Eif1a (MGI:95298)
chrX	20149910	20267513	Xp22.2-p22.1	Xp22.12	300075	RPS6KA3, RSK2, MRX19	Ribosomal protein S6 kinase, 90kD, polypeptide 3	RPS6KA3	6197	ENSG00000177189		Coffin-Lowry syndrome, 303600 (3), X-linked dominant, Isolated cases; Mental retardation, X-linked 19, 300844 (3), X-linked dominant	Rps6ka3 (MGI:104557)
chrX	21374297	21654694	Xp22.12	Xp22.12	300724	CNKSR2, CNK2, KIAA0902, MRXSHG	connector enhancer of KSR 2	CNKSR2	22866	ENSG00000149970	conflicting assignment to chr.1	Mental retardation, X-linked, syndromic, Houge type, 301008 (3), X-linked	Cnksr2 (MGI:2661175)
chrX	21705971	21758159	Xp22.1	Xp22.12	300226	SMPX, DFNX4	Small muscle protein, X-linked	SMPX	23676	ENSG00000091482		Deafness, X-linked 4, 300066 (3), X-linked dominant	
chrX	21839537	21885422	Xp22.12-p22.11	Xp22.12	300294	MBTPS2, S2P, IFAP, KFSDX, OLMSX	Membrane-bound transcription factor protease, site 2	MBTPS2	51360	ENSG00000012174	mutation identified in 1 OLMSX family	IFAP syndrome with or without BRESHECK syndrome, 308205 (3), X-linked recessive; Keratosis follicularis spinulosa decalvans, X-linked, 308800 (3), X-linked recessive; ?Olmsted syndrome, X-linked, 300918 (3), X-linked recessive	Mbtps2 (MGI:2444506)
chrX	21855986	21858726	Xp22.2-p22.1	Xp22.12	300570	YY2, ZNF631	Transcription factor YY2	YY2	404281	ENSG00000230797			Yy2 (MGI:3837947)
chrX	21940572	21994836	Xp22.1	Xp22.11	300105	SMS, SRS, MRSR	Spermine synthase	SMS	6611	ENSG00000102172		Mental retardation, X-linked, Snyder-Robinson type, 309583 (3), X-linked recessive	Sms-ps,Sms (MGI:109490,MGI:3705601)
chrX	22032326	22251309	Xp22.2-p22.1	Xp22.11	300550	PHEX, HYP, HPDR1, LXHR	Phosphate regulating endopeptidase homolog, X-linked	PHEX	5251	ENSG00000102174		Hypophosphatemic rickets, X-linked dominant, 307800 (3), X-linked dominant	Phex (MGI:107489)
chrX	23334368	23404373	Xp22.11	Xp22.11	300828	PTCHD1, AUTSX4	Patched domain-containing protein 1	PTCHD1	139411	ENSG00000165186		{Autism, susceptibility to, X-linked 4}, 300830 (3), X-linked recessive	Ptchd1 (MGI:2685233)
chrX	23664259	23686398	Xp22.11	Xp22.11	300927	PRDX4, AOE372	Peroxiredoxin 4	PRDX4	10549	ENSG00000123131			Prdx4 (MGI:1859815)
chrX	23701054	23743289	Xp22.11	Xp22.11	300862	ACOT9, MTACT48	Acyl-CoA thioesterase 9	ACOT9	23597	ENSG00000123130			Acot9,Acot10 (MGI:1928939,MGI:1928940)
chrX	23783157	23786222	Xp22.1	Xp22.11	313020	SAT1, SSAT	Spermidine/spermine N1-acetyltransferase 1	SAT1	6303	ENSG00000130066			Sat1 (MGI:98233)
chrX	23833347	23907939	Xp22.1	Xp22.11	300753	APOO, MYO25, FAM121B	Apolipoprotein O	APOO	79135	ENSG00000184831			Apoo (MGI:1915566)
chrX	23983715	24027185	Xp22.1	Xp22.11	300980	KLHL15, KIAA1677	Kelch-like 15	KLHL15	80311	ENSG00000174010		Mental retardation, X-linked 103, 300982 (3), X-linked recessive	Klhl15 (MGI:1923400)
chrX	24054947	24078809	Xp22.2-p22.1	Xp22.11	300161	EIF2S3, EIF2G, MEHMO, MRXSBRK	Eukaryotic translation initiation factor 2, subunit 3	EIF2S3	1968	ENSG00000130741		MEHMO syndrome, 300148 (3)	Eif2s3x (MGI:1349431)
chrX	24148988	24216254	Xp22.2-p21.3	Xp22.11	314980	ZFX	Zinc finger protein, X-linked	ZFX	7543	ENSG00000005889	nonlyonizing		Zfx (MGI:99211)
chrX	24465226	24550465	Xp22.11	Xp22.11	300906	PDK3, CMTX6	Pyruvate dehydrogenase kinase, isoenzyme 3	PDK3	5165	ENSG00000067992	1 family identified with mutation	?Charcot-Marie-Tooth disease, X-linked dominant, 6, 300905 (3), X-linked dominant	Pdk3 (MGI:2384308)
chrX	24558086	24672861	Xp22.11	Xp22.11	300948	PCYT1B	Phosphate cytidylyltransferase 1, choline, beta isoform	PCYT1B	9468	ENSG00000102230			Pcyt1b (MGI:2147987)
chrX	24693832	24996985	Xp22.3-p21.1	Xp22.1-p21.3	312040	POLA1	Polymerase, DNA, alpha-1	POLA1	5422	ENSG00000101868		Pigmentary disorder, reticulate, with systemic manifestations, X-linked, 301220 (3), X-linked recessive	Pola1 (MGI:99660)
chrX	24900000	37800000	Xp21		300679	DELXp21, CXDELp21	Chromosome Xp21 deletion syndrome				contiguous gene deletion syndrome	Chromosome Xp21 deletion syndrome, 300679 (4)	
chrX	24900000	29300000	Xp21.3		300488	MENOQ1	Menopause, natural, age at, QTL 1		494029			{Menopause, natural, age at, QTL1}, 300488 (2), X-linked dominant	
chrX	24900000	31500000	Xp21.3-p21.2		312612	RP6	Retinitis pigmentosa-6, X-linked recessive	RP6	6104			?Retinitis pigmentosa, X-linked recessive, 6, 312612 (2), X-linked	
chrX	25003693	25015947	Xp22.13	Xp21.3	300382	ARX, ISSX, PRTS, MRXS1, MRX36, MRX54, MRX43, MRX87, MRX29, MRX32	Aristaless-related homeobox, X-linked	ARX	170302	ENSG00000004848		Epileptic encephalopathy, early infantile, 1, 308350 (3), X-linked recessive; Hydranencephaly with abnormal genitalia, 300215 (3), X-linked; Lissencephaly, X-linked 2, 300215 (3), X-linked; Mental retardation, X-linked 29 and others, 300419 (3), X-linked recessive; Partington syndrome, 309510 (3), X-linked recessive; Proud syndrome, 300004 (3), X-linked	Arx (MGI:1097716)
chrX	26192439	26195645	Xp22	Xp21.3	300467	MAGEB6	Melanoma antigen, family B, 6	MAGEB6	158809	ENSG00000176746			
chrX	26216168	26218269	Xp22	Xp21.3	300466	MAGEB5	Melanoma antigen, family B, 5	MAGEB5	347541	ENSG00000188408			Gm14781,Mageb5 (MGI:2148169,MGI:3712084)
chrX	27807989	27823013	Xp21.3	Xp21.3	300761	MAGEB10	Melanoma antigen, family B, 10	MAGEB10	139422	ENSG00000177689			
chrX	28587563	29956349	Xp22.1-p21.3	Xp21.3-p21.2	300206	IL1RAPL1, IL1R8, MRX21, MRX34	Il-1 receptor accessory protein-like 1	IL1RAPL1	11141	ENSG00000169306		Mental retardation, X-linked 21/34, 300143 (3), X-linked recessive	Il1rapl1 (MGI:2687319)
chrX	29300000	31500000	Xp21.2		300030	DFNX3, DFN4	Deafness, X-linked 3	DFNX3	1680		?same as DMD	Deafness, X-linked 3, 300030 (2), X-linked	
chrX	29300000	85400000	Xp21.2-q21.1		309050	XS, LUXS	Lutheran suppressor, X-linked	XS	7523				
chrX	30215557	30220088	Xp21.3	Xp21.2	300098	MAGEB2, DAM6	Melanoma antigen, family B, 2	MAGEB2	4113	ENSG00000099399			Mageb4 (MGI:2148568)
chrX	30230435	30237492	Xp21.3	Xp21.2	300152	MAGEB3	Melanoma antigen, family B, 3	MAGEB3	4114	ENSG00000198798			
chrX	30241939	30244192	Xp21.3	Xp21.2	300153	MAGEB4	Melanoma antigen, family B, 4	MAGEB4	4115	ENSG00000120289			
chrX	30243730	30252037	Xp21.3	Xp21.2	300097	MAGEB1, MAGEL1, DAM10	Melanoma antigen, family B, 1	MAGEB1	4112	ENSG00000214107			Mageb1,Mageb2,Mageb3 (MGI:105109,MGI:105118,MGI:105117)
chrX	30304421	30309377	Xp21.3-p21.2	Xp21.2	300473	NR0B1, DAX1, AHC, AHX, SRXY2	Nuclear receptor subfamily 0, group B, member 1	NR0B1	190	ENSG00000169297	distal to GK	Adrenal hypoplasia, congenital, 300200 (3), X-linked recessive; 46XY sex reversal 2, dosage-sensitive, 300018 (3), X-linked	Nr0b1 (MGI:1352460)
chrX	30653347	30731461	Xp21.3-p21.2	Xp21.2	300474	GK	Glycerol kinase	GK	2710	ENSG00000198814	2Mb distal to DMD; pseudogene on 4q32	Glycerol kinase deficiency, 307030 (3), X-linked recessive	Gykl1 (MGI:891990)
chrX	30827441	30889393	Xp21.2	Xp21.2	300480	TAB3	Tak1 (MAP3K7) binding protein 3	TAB3	257397	ENSG00000157625			Tab3 (MGI:1913974)
chrX	31071240	31072052	Xp21.2	Xp21.2	300308	FTHL17	Ferritin heavy polypeptide-like 17	FTHL17	53940	ENSG00000132446			
chrX	31119218	33339608	Xp21.2	Xp21.2-p21.1	300377	DMD, BMD, CMD3B	Dystrophin	DMD	1756	ENSG00000198947	dystrophin gene; cen-5'-3'-pter; 2Mb; ?Xp21.13	Becker muscular dystrophy, 300376 (3), X-linked recessive; Cardiomyopathy, dilated, 3B, 302045 (3), X-linked; Duchenne muscular dystrophy, 310200 (3), X-linked recessive	Dmd (MGI:94909)
chrX	31500000	50100000	Xp21.1-p11.23		300858	MRXS17	Mental retardation, X-linked, syndromic 17		100739996		between rs2748314 and rs5906782	Mental retardation, X-linked, syndromic 17, 300858 (2), X-linked recessive	
chrX	34627063	34657287	Xp11.4	Xp21.1	300698	TMEM47, BCMP1	Transmembrane protein 47	TMEM47	83604	ENSG00000147027			Tmem47 (MGI:2177570)
chrX	35798310	35803771	Xp21.3	Xp21.1	300762	MAGEB16	Melanoma antigen, family B, 16	MAGEB16	139604	ENSG00000189023			Mageb16 (MGI:1919217)
chrX	37349274	37457294	Xp21.1	Xp21.1	300935	PRRG1, PRGP1	Proline-rich gamma-carboxyglutamic acid protein 1	PRRG1	5638	ENSG00000130962			Prrg1 (MGI:1917364)
chrX	37685685	37732129	Xp21.2-p21.1	Xp21.1	314850	XK, MCLDS	Kell blood group precursor	XK	7504	ENSG00000047597	~500kb distal to CGD	McLeod syndrome with or without chronic granulomatous disease, 300842 (3), X-linked	Xk (MGI:103569)
chrX	37780016	37813460	Xp21.1	Xp21.1-p11.4	300481	CYBB, CGD, AMCBX2, IMD34	Cytochrome b-245, beta polypeptide	CYBB	1536	ENSG00000165168	proximal to DMD	Chronic granulomatous disease, X-linked, 306400 (3), X-linked recessive; Immunodeficiency 34, mycobacteriosis, X-linked, 300645 (3), X-linked recessive	Cybb (MGI:88574)
chrX	37800000	58100000	Xp11.4-p11.2		300638	GAGE8	G antigen 8	GAGE8	100101629	ENSG00000189064			
chrX	37800000	61000000	Xp11		300351	GRDX, GD3	Graves disease, susceptibility to, X-linked		117189			{Graves disease, susceptibility to, X-linked}, 300351 (2)	
chrX	37800000	61000000	Xp11		300136	IDDMX	Diabetes mellitus, insulin-dependent, X-linked, susceptibility to		8245		only with DR3	{Diabetes mellitus, insulin-dependent, X-linked}, 300136 (2)	
chrX	37800000	61000000	Xp11		308905	LOAS	Leber optic atrophy, susceptibility to		100188775			{Leber optic atrophy, susceptibility to}, 308905 (2), X-linked	
chrX	37800000	99100000	Xp11-q21		300047	MRX20	Mental retardation, X-linked-20	MRX20	4384			Mental retardation, X-linked 20, 300047 (2), X-linked	
chrX	37800000	61000000	Xp11		309545	MRXS12	Mental retardation, X-linked, syndromic 12		8246			?Mental retardation, X-linked, syndromic 12, 309545 (2), X-linked	
chrX	37800000	42500000	Xp11.4		300589	NYS5	Nystagmus 5, congenital, X-linked		780901		max lod at DXS993	Nystagmus 5, congenital, X-linked, 300589 (2), X-linked dominant	
chrX	37800000	58100000	Xp11.4-p11.21		311050	OPA2	Optic atrophy, X-linked	OPA2	4977			Optic atrophy 2, X-linked, 311050 (2), X-linked	
chrX	37800000	99100000	Xp11-q21		309610	PRS, MRXS2	Prieto syndrome (mental retardation, X-linked, syndromic 2, with dysmorphism and cerebral atrophy)	PRS	5640			Prieto syndrome, 309610 (2), X-linked recessive	
chrX	37838835	37847635	Xp21	Xp11.4	300302	TCTE1L	T complex-associated testis-expressed 1-like	DYNLT3	6990	ENSG00000165169			Dynlt3 (MGI:1914367)
chrX	38149334	38220923	Xp21.1	Xp11.4	300187	SRPX, ETX1	Sushi-repeat-containing protein, X chromosome	SRPX	8406	ENSG00000101955	probably between OTC and CGD		Srpx (MGI:1858306)
chrX	38269162	38327541	Xp11.4	Xp11.4	312610	RPGR, RP3, CRD, RP15, COD1, CORDX1	Retinitis pigmentosa GTPase regulator	RPGR	6103	ENSG00000156313		Cone-rod dystrophy, X-linked, 1, 304020 (3), X-linked; Macular degeneration, X-linked atrophic, 300834 (3), X-linked recessive; Retinitis pigmentosa 3, 300029 (3); Retinitis pigmentosa, X-linked, and sinorespiratory infections, with or without deafness, 300455 (3)	Rpgr (MGI:1344037)
chrX	38352482	38421449	Xp21.1	Xp11.4	300461	OTC	Ornithine transcarbamylase	OTC	5009	ENSG00000036473	proximal to DMD, CGD	Ornithine transcarbamylase deficiency, 311250 (3), X-linked recessive	Otc (MGI:97448)
chrX	38561477	38688917	Xq11	Xp11.4	300096	TSPAN7, TM4SF2, MXS1, A15, MRX58	Tetraspanin 7	TSPAN7	7102	ENSG00000156298		Mental retardation, X-linked 58, 300210 (3), X-linked recessive	Tspan7 (MGI:1298407)
chrX	38801431	38806531	Xp11.4	Xp11.4	300961	MID1IP1, MIG12	MID1-interacting protein 1	MID1IP1	58526	ENSG00000165175			Mid1ip1 (MGI:1915291)
chrX	40051245	40177389	Xp11.4	Xp11.4	300485	BCOR, KIAA1575, MCOPS2, MAA2, ANOP2	BCL6 corepressor	BCOR	54880	ENSG00000183337		Microphthalmia, syndromic 2, 300166 (3), X-linked dominant	Bcor (MGI:1918708)
chrX	40580963	40606636	Xp11.4	Xp11.4	300556	ATP6AP2, ATP6M8-9, XMRE, MRXSH, XPDS	ATPase, H+ transporting, lysosomal, accessory protein 2	ATP6AP2	10159	ENSG00000182220	mutation identified in 1 XPDS family	Mental retardation, X-linked, syndromic, Hedera type, 300423 (3), X-linked recessive; ?Parkinsonism with spasticity, X-linked, 300911 (3), X-linked recessive	Atp6ap2 (MGI:1917745)
chrX	40649542	40736121	Xp11.4-p11.2	Xp11.4	300182	MED14, CRSP2, CXorf4, TRAP170, EXLM1	Mediator complex subunit 14	MED14	9282	ENSG00000180182			Med14 (MGI:1349442)
chrX	41085419	41236578	Xp11.4	Xp11.4	300072	USP9X, DFFRX, MRX99, MRXS99F	Ubiquitin-specific protease-9, X chromosome (Drosophila fat facets related, X-linked)	USP9X	8239	ENSG00000124486		Mental retardation, X-linked 99, 300919 (3), X-linked recessive; Mental retardation, X-linked 99, syndromic, female-restricted, 300968 (3), X-linked dominant	Usp9x (MGI:894681)
chrX	41333307	41364471	Xp11.3-p11.23	Xp11.4	300160	DDX3X, DDX3, DBX, MRX102	DEAD/H box-3, X-linked	DDX3X	1654	ENSG00000215301		Mental retardation, X-linked 102, 300958 (3), X-linked recessive, X-linked dominant	Ddx3x (MGI:103064)
chrX	41447459	41476413	Xp11.4	Xp11.4	300278	NYX, CSNB1A, NBM1	Nyctalopin	NYX	60506	ENSG00000188937		Night blindness, congenital stationary (complete), 1A, X-linked, 310500 (3), X-linked recessive	Nyx (MGI:2448607)
chrX	41514933	41923524	Xp11.4	Xp11.4	300172	CASK, MICPCH, FGS4, CMG, MRXSNA	Calcium/calmodulin-dependent serine protein kinase	CASK	8573	ENSG00000147044		FG syndrome 4, 300422 (3); Mental retardation and microcephaly with pontine and cerebellar hypoplasia, 300749 (3), X-linked dominant; Mental retardation, with or without nystagmus, 300422 (3)	Cask (MGI:1309489)
chrX	41686396	41697276	Xp11.4	Xp11.4	300241	GPR34	G protein-coupled receptor 34	GPR34	2857	ENSG00000171659			Gpr34 (MGI:1346334)
chrX	41724154	41730134	Xp11.4	Xp11.4	300748	GPR82	G protein-coupled receptor 82	GPR82	27197	ENSG00000171657			Gpr82 (MGI:2441734)
chrX	42500000	68500000	Xp11.3-q12		300652	AGSPX	Angioma serptiginosum, X-linked		100188767		between DXS8026 and DXS106	Angio serpiginosum, 300652 (2), X-linked dominant	
chrX	42500000	47600000	Xp11.3		300578	DELXp11.3, CXDELp11.3	Chromosome Xp11.3 deletion syndrome (X-linked mental retardation with retinitis pigmentosa)					Chromosome Xp11.3 deletion syndrome, 300578 (4), X-linked recessive	
chrX	42500000	76800000	Xp11.3-q13.3		300062	MRX14	Mental retardation, X-linked-14	MRX14	4378			Mental retardation, X-linked 14, 300062 (2), X-linked	
chrX	42500000	58100000	Xp11.3-p11.21		300498	MRX45	Mental retardation, X-linked 45					Mental retardation,X-linked 45, 300498 (2), X-linked	
chrX	42500000	58100000	Xp11.3-p11.21		300115	MRX50	Mental retardation, X-linked nonspecific, type 50	MRX50	4413			Mental retardation, X-linked 50, 300115 (2), X-linked	
chrX	42500000	109400000	Xp11.3-q22.3		300505	MRX84	Mental retardation, X-linked 84	MRX84	378882		29 other MRX loci in same region	Mental retardation, X-linked 84, 300505 (2), X-linked recessive	
chrX	42500000	47600000	Xp11.3		300848	MRX89	Mental retardation, X-linked 89				t(X;7)(p11.3;q11.21)	Mental retardation, X-linked 89, 300848 (2), X-linked dominant	
chrX	42500000	47600000	Xp11.3		300851	MRX92	Mental retardation, X-linked 92		102775565		previously associated with ZNF674	Mental retardation, X-linked 92, 300851 (2), X-linked recessive	
chrX	42500000	109400000	Xp11.3-q22		300218	MRXS7	Mental retardation, X-linked, syndromic 7	MRXS7	4429			Mental retardation, X-linked syndromic 7, 300218 (2)	
chrX	43654906	43746823	Xp11.23	Xp11.3	309850	MAOA, BRNRS	Monoamine oxidase A	MAOA	4128	ENSG00000189221	NDP, MAOA, MAOB closely linked	{Antisocial behavior}, 300615 (3), X-linked recessive; Brunner syndrome, 300615 (3), X-linked recessive	Maoa (MGI:96915)
chrX	43766609	43882474	Xp11.23	Xp11.3	309860	MAOB	Monoamine oxidase B	MAOB	4129	ENSG00000069535			Maob (MGI:96916)
chrX	43948775	43973674	Xp11.4	Xp11.3	300658	NDP, ND, EVR2	Norrin	NDP	4693	ENSG00000124479		Exudative vitreoretinopathy 2, X-linked, 305390 (3); Norrie disease, 310600 (3), X-linked recessive	Ndp (MGI:102570)
chrX	44146253	44343676	Xp11.3	Xp11.3	300817	EFHC2	EF-hand domain (C-terminal)-containing protein 2	EFHC2	80258	ENSG00000183690			Efhc2 (MGI:1921655)
chrX	44523638	44542974	Xp11.3	Xp11.3	300871	FUNDC1	FUN14 domain-containing protein 1	FUNDC1	139341	ENSG00000069509			Fundc1 (MGI:1919268)
chrX	44844002	44844887	Xp11.3	Xp11.3	300678	DUSP21, LMWDSP21	Dual-specificity phosphatase 21	DUSP21	63904	ENSG00000189037			
chrX	44873174	45112611	Xp11.2	Xp11.3	300128	KDM6A, UTX, KABUK2	Lysine (K)-specific demethylase 6A	KDM6A	7403	ENSG00000147050	UTY also in mouse and man; escapes inactivation	Kabuki syndrome 2, 300867 (3), X-linked dominant	Kdm6a (MGI:1095419)
chrX	45148372	45200900	Xp11.3	Xp11.3	300959	CXorf36, DIA1R	Chromosome X open reading frame 36	CXorf36	79742	ENSG00000147113			4930578C19Rik (MGI:1923155)
chrX	45746156	45746265	Xp11.3	Xp11.3	300568	MIR221, MIRN221	Micro RNA 221	MIR221	407006		near MIRN222		
chrX	45747014	45747123	Xp11.3	Xp11.3	300569	MIR222, MIRN222	Micro RNA 222	MIR222	407007		near MIRN221		
chrX	46447188	46474638	Xp11.3	Xp11.3	300585	ZNF673, FLJ20344	Zinc finger protein 673	KRBOX4	55634	ENSG00000147121			
chrX	46497724	46545465	Xp11	Xp11.3	300573	ZNF674	Zinc finger protein 674	ZNF674	641339	ENSG00000251192			
chrX	46573686	46598495	Xp11.3	Xp11.3	300375	CHST7, C6ST2	Carbohydrate sulfotransferase 7	CHST7	56548	ENSG00000147119			Chst7 (MGI:1891767)
chrX	46599250	46759171	Xp11.3	Xp11.3	300368	SLC9A7, NHE7	Solute carrier family 9 (sodium/hydrogen exchanger), member 7	SLC9A7	84679	ENSG00000065923			Slc9a7 (MGI:2444530)
chrX	46836911	46882357	Xp11.23	Xp11.3	300757	RP2	Retinitis pigmentosa-2, X-linked recessive	RP2	6102	ENSG00000102218		Retinitis pigmentosa 2, 312600 (3), X-linked	Rp2 (MGI:1277953)
chrX	46912275	47061241	Xp11.23	Xp11.3	300618	PHF16, JADE3, KIAA0215	PHD finger protein 16	JADE3	9767	ENSG00000102221			Jade3 (MGI:2148019)
chrX	47078354	47093313	Xp11.2-q11.2	Xp11.3	300212	RGN, SMP30	Regucalcin	RGN	9104	ENSG00000130988			Rgn (MGI:108024)
chrX	47142215	47145209	Xp11.3	Xp11.3	300403	NDUFB11, LSDMCA3	NADH-dehydrogenase 1 beta subcomplex, 11	NDUFB11	54539	ENSG00000147123	mutation identified in 1 COX I deficient patient	Linear skin defects with multiple congenital anomalies 3, 300952 (3), X-linked dominant; ?Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufb11 (MGI:1349919)
chrX	47145195	47186814	Xp11.23	Xp11.3	300080	RBM10, DXS8237E, KIAA0122, TARPS	RNA-binding motif protein 10	RBM10	8241	ENSG00000182872		TARP syndrome, 311900 (3), X-linked recessive	Rbm10 (MGI:2384310)
chrX	47190799	47215127	Xp11.23	Xp11.3	314370	UBA1, UBE1, GXP1, A1ST, SMAX2, AMCX1	Ubiquitin-like modifier-activating enzyme 1	UBA1	7317	ENSG00000130985	escapes inactivation	Spinal muscular atrophy, X-linked 2, infantile, 301830 (3), X-linked recessive	Uba1 (MGI:98890)
chrX	47204847	47205860	Xp11.23	Xp11.3	300164	INE1	Inactivation escape 1	INE1	8552				
chrX	47217880	47229996	Xp11.3-p11.23	Xp11.3	311550	CDK16, PCTK1, PCTAIRE1	Cyclin-dependent kinase 16	CDK16	5127	ENSG00000102225			Cdk16 (MGI:97516)
chrX	47232914	47248327	Xp21.2-p11.2	Xp11.3	300050	USP11, UHX1	Ubiquitin-specific protease-11 (ubiquitin carboxyl-terminal hydrolase)	USP11	8237	ENSG00000102226			Usp11 (MGI:2384312)
chrX	47370599	47413698	Xp11.2	Xp11.3	300024	ZNF157	Zinc finger protein-157 (HZF22)	ZNF157	7712	ENSG00000147117			
chrX	47444690	47485933	Xp22.1-cen	Xp11.3	314995	ZNF41	Zinc finger protein-41	ZNF41	7592	ENSG00000147124			
chrX	47561099	47571920	Xp11.4-p11.2	Xp11.3	311010	ARAF1, RAFA1, PKS2	Oncogene ARAF1	ARAF	369	ENSG00000078061			Araf (MGI:88065)
chrX	47571900	47619856	Xp11.4-p11.2	Xp11.3-p11.2	313440	SYN1	Synapsin I	SYN1	6853	ENSG00000008056	5kb from PFC	Epilepsy, X-linked, with variable learning disabilities and behavior disorders, 300491 (3), X-linked recessive, X-linked dominant	Syn1 (MGI:98460)
chrX	47582290	47586790	Xp11.3-p11.23	Xp11.3	305370	TIMP1, TIMP, EPA	Erythroid-potentiating activity (tissue inhibitor of metalloproteinases)	TIMP1	7076	ENSG00000102265	in intron of SYN1		Timp1 (MGI:98752)
chrX	47600000	54800000	Xp11.23-p11.22		300801	DUPXp11.23p11.22, CXDUPp11.23p11.22	Chromosome Xp11.23-p11.22 duplication syndrome					Chromosome Xp11.23-p11.22 duplication syndrome, 300801 (4), X-linked dominant	
chrX	47600000	50100000	Xp11.23		300726	GAGE2B	G antigen 2B	GAGE2B	645037	ENSG00000189064			
chrX	47600000	50100000	Xp11.23		300595	GAGE2C, GAGE2	G antigen 2C	GAGE2C	2574	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300735	GAGE2D	G antigen 2D	GAGE2D	729408	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300736	GAGE2E	G antigen 2E	GAGE2E	26749	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300596	GAGE3	G antigen 3						
chrX	47600000	50100000	Xp11.23		300597	GAGE4	G antigen 4	GAGE4	2576	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300598	GAGE5	G antigen 5	GAGE5	2577				
chrX	47600000	50100000	Xp11.23		300599	GAGE6	G antigen 6	GAGE6	2578	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300601	GAGE7	G antigen 7	GAGE7	2579	ENSG00000236362			
chrX	47600000	50100000	Xp11.23		300637	GAGE7B	G antigen 7B	GAGE12I	26748	ENSG00000236362			
chrX	47600000	68500000	Xp11.2-q12		300433	MRX81	Mental retardation, X-linked 81	MRX81	266678		between DXS1039 and DXS1216	Mental retardation, X-linked 81, 300433 (2), X-linked recessive	
chrX	47624212	47630304	Xp11.4-p11.23	Xp11.23	300383	PFC, PFD	Properdin P factor, complement	CFP	5199	ENSG00000126759		Properdin deficiency, X-linked, 312060 (3), X-linked recessive	Cfp (MGI:97545)
chrX	47635519	47650603	Xp11.2	Xp11.23	311040	ELK1	ELK1, member of ETS oncogene family	ELK1	2002	ENSG00000126767	distal to OATL1		Elk1 (MGI:101833)
chrX	47651791	47659179	Xp11.23	Xp11.23	300234	UXT	Ubiquitously expressed transcript	UXT	8409	ENSG00000126756			Uxt (MGI:1277988)
chrX	47836863	47925625	Xp22.1-p11	Xp11.23	314998	ZNF81	Zinc finger protein-81 (HFZ20)	ZNF81	347344	ENSG00000197779			
chrX	47974850	48003994	Xp11.3	Xp11.23	314993	ZNF21	Zinc finger protein-12	ZNF182	7569	ENSG00000147118			Zfp182 (MGI:2442220)
chrX	48004335	48009735	Xp11.23	Xp11.23	300593	SPACA5, LOC389852	Sperm acrosome associated 5	SPACA5	389852	ENSG00000171489			Spaca5 (MGI:2685564)
chrX	48058177	48071657	Xp11.23	Xp11.23	300819	ZNF630	Zinc finger protein 630	ZNF630	57232	ENSG00000221994			
chrX	48107981	48120685	Xp11.23	Xp11.23	300541	SSX6	Synovial sarcoma, X breakpoint 6	SSX6	280657				
chrX	48177981	48196797	Xp11.23	Xp11.23	300327	SSX5	Synovial sarcoma, X breakpoint 5	SSX5	6758	ENSG00000165583			
chrX	48255316	48267443	Xp11.23	Xp11.23	312820	SSX1, SSRC	Synovial sarcoma, X breakpoint 1	SSX1	6756	ENSG00000126752	fused with SYT in synovial sarcoma	?Sarcoma, synovial, 300813 (3)	
chrX	48301549	48306178	Xp11.23	Xp11.23	300544	SSX9	Sarcoma, synovial, X breakpoint 9	SSX9	280660				
chrX	48346427	48356752	Xp11.23	Xp11.23	300325	SSX3	Synovial sarcoma, X breakpoint 3	SSX3	10214	ENSG00000165584			
chrX	48383526	48393342	Xp11.23	Xp11.23	300326	SSX4	Synovial sarcoma, X breakpoint 4	SSX4	6759	ENSG00000268009			Ssxb2 (MGI:2446771)
chrX	48458536	48470255	Xp11.23	Xp11.23	300649	SLC38A5, SN2	Solute carrier family 38 (amino acid transporter), member 5	SLC38A5	92745	ENSG00000017483			Slc38a5 (MGI:2148066)
chrX	48476020	48486363	Xp11.23	Xp11.23	300499	FTSJ1, JM23, SPB1, MRX44, MRX9	FTSJ homolog 1	FTSJ1	24140	ENSG00000068438		Mental retardation, X-linked 9/44, 309549 (3), X-linked recessive	Ftsj1 (MGI:1859648)
chrX	48508958	48520813	Xp11.23	Xp11.23	300651	PORCN, PORC, DHOF, FODH	Porcupine, Drosophila, homolog of	PORCN	64840	ENSG00000102312		Focal dermal hypoplasia, 305600 (3), X-linked dominant	Porcn (MGI:1890212)
chrX	48521775	48528715	Xp11.23-p11.22	Xp11.23	300205	EBP, CDPX2, CPXD, CPX, MEND	Emopamil-binding protein	EBP	10682	ENSG00000147155		Chondrodysplasia punctata, X-linked dominant, 302960 (3), X-linked dominant; MEND syndrome, 300960 (3), X-linked recessive	Ebp (MGI:107822)
chrX	48539618	48562608	Xp11.3-p11.23	Xp11.23	311240	TBC1D25, OATL1	TBC1 domain family, member 25	TBC1D25	4943	ENSG00000068354			Tbc1d25 (MGI:2444862)
chrX	48574352	48581164	Xp11.23	Xp11.23	300027	RBM3	RNA binding motif protein 3	RBM3	5935	ENSG00000102317			Rbm3,Rbm3-ps (MGI:1099460,MGI:3642874)
chrX	48590052	48605193	Xp11.23	Xp11.23	300512	WDR13	WD repeat-containing protein 13	WDR13	64743	ENSG00000101940			Wdr13 (MGI:1914661)
chrX	48683752	48691426	Xp11.23-p11.22	Xp11.23	300392	WAS, IMD2, THC1, SCNX	Wiskott-Aldrich syndrome gene	WAS	7454	ENSG00000015285	t(18;X)(q11.2;p11.2); distal to TIMP	Neutropenia, severe congenital, X-linked, 300299 (3), X-linked recessive; Thrombocytopenia, X-linked, 313900 (3), X-linked recessive; Thrombocytopenia, X-linked, intermittent, 313900 (3), X-linked recessive; Wiskott-Aldrich syndrome, 301000 (3), X-linked recessive	Was (MGI:105059)
chrX	48695553	48709015	Xp11.23	Xp11.23	300254	SUV39H1	Suppressor of variegation 3-9, Drosophila, homolog of, 1	SUV39H1	6839	ENSG00000101945			Suv39h1 (MGI:1099440)
chrX	48786539	48794310	Xp11.23	Xp11.23	305371	GATA1, GF1, ERYF1, NFE1, XLTDA, XLTT, XLANP	GATA-binding protein-1 (globin transcription factor-1)	GATA1	2623	ENSG00000102145		Anemia, X-linked, with/without neutropenia and/or platelet abnormalities, 300835 (3), X-linked recessive; Leukemia, megakaryoblastic, with or without Down syndrome, somatic, 190685 (3); Thrombocytopenia with beta-thalassemia, X-linked, 314050 (3), X-linked recessive; Thrombocytopenia, X-linked, with or without dyserythropoietic anemia, 300367 (3), X-linked recessive	Gata1 (MGI:95661)
chrX	48801376	48824981	Xp11.23	Xp11.23	300272	HDAC6, CPBHM	Histone deacetylase 6	HDAC6	10013	ENSG00000094631	mutation identified in 1 CPBHM family	?Chondrodysplasia with platyspondyly, distinctive brachydactyly, hydrocephaly, and microphthalmia, 300863 (3), X-linked dominant	Hdac6 (MGI:1333752)
chrX	48826512	48829868	Xp11.2	Xp11.23	300437	HRAS2, HRASP	v-Ha-ras harvey rat sarcoma viral oncogene homolog 2	ERAS	3266	ENSG00000187682			Eras (MGI:2665023)
chrX	48831091	48835637	Xp11.3	Xp11.23	300399	PCSK1N, PROSAAS	Proprotein convertase, subtilisin/kexin-type, 1, inhibitor of	PCSK1N	27344	ENSG00000102109			Pcsk1n (MGI:1353431)
chrX	48893446	48898142	Xp11.2	Xp11.23	300249	TIMM17B, TIM17B	Translocase of inner mitochondrial membrane 17, yeast, homolog of, B	TIMM17B	10245	ENSG00000126768			Timm17b (MGI:1343176)
chrX	48897861	48903144	Xp11.23	Xp11.23	300463	PQBP1, NPW38, SHS, MRX55, MRXS3, RENS1, MRXS8	Polyglutamine-binding protein 1	PQBP1	10084	ENSG00000102103		Renpenning syndrome, 309500 (3), X-linked recessive	Pqbp1 (MGI:1859638)
chrX	48903179	48911957	Xp11.23-p11.22	Xp11.23	314375	SLC35A2, UGALT, UGTL, UGT2, CDGX, CDG2M	Solute carrier family 35 (UDP-galactose transporter), member 2	SLC35A2	7355	ENSG00000102100		Congenital disorder of glycosylation, type IIm, 300896 (3), X-linked dominant, Somatic mosaicism	
chrX	48913181	48919135	Chr.X	Xp11.23	300295	PIM2	Oncogene PIM2	PIM2	11040	ENSG00000102096			Pim2 (MGI:97587)
chrX	48922023	48960782	Xp11.23	Xp11.23	300713	OTUD5, DUBA	OTU domain-containing protein 5	OTUD5	55593	ENSG00000068308			
chrX	48960982	48972102	Xp11.23	Xp11.23	300281	KCND1	Potassium voltage-gated channel, SHAL-related subfamily, member 1	KCND1	3750	ENSG00000102057			Kcnd1 (MGI:96671)
chrX	48973719	49002263	Xp11.23	Xp11.23	300408	GRIPAP1, GRASP1, KIAA1167	GRIP1-associated protein 1	GRIPAP1	56850	ENSG00000068400			Gripap1 (MGI:1859616)
chrX	49028725	49043516	Xp11.22	Xp11.23	314310	TFE3, RCCX1	Transcription factor for IgH enhancer	TFE3	7030	ENSG00000068323	fuses with PRCC in RCCP	Renal cell carcinoma, papillary, 1, 300854 (3)	Tfe3 (MGI:98511)
chrX	49053431	49069857	Xp11.23	Xp11.23	300947	CCDC120	Coiled-coil domain-containing protein 120	CCDC120	90060	ENSG00000147144			Ccdc120 (MGI:1859619)
chrX	49071155	49074044	Xp11.23	Xp11.23	300840	PRAF2, JM4	PRA1 domain family, member 2	PRAF2	11230	ENSG00000243279			Praf2 (MGI:1859607)
chrX	49074432	49101120	Xp11.23	Xp11.23	300526	WDR45, WIPI4, NBIA5	WD repeat-containing protein 45	WDR45	11152	ENSG00000196998	?pseudogene on 4q31.3	Neurodegeneration with brain iron accumulation 5, 300894 (3), X-linked dominant	Wdr45 (MGI:1859606)
chrX	49113384	49124546	Xp11.23	Xp11.23	301003	GPKOW, GPATCH5	G-patch domain and KO@ motifs	GPKOW	27238	ENSG00000068394			Gpkow (MGI:1859610)
chrX	49171836	49175119	Xp11.23-p11.22	Xp11.23	300112	PLP2	Proteolipid protein 2	PLP2	5355	ENSG00000102007			Plp2 (MGI:1298382)
chrX	49174801	49186399	Xp11.23	Xp11.23	300111	PRICKLE3, LMO6	Prickle, Drosophila, homolog of, 3	PRICKLE3	4007	ENSG00000012211			Prickle3 (MGI:1859635)
chrX	49187811	49200201	Xp11.23-p11.22	Xp11.23	313475	SYP, MRXSYP	Synaptophysin	SYP	6855	ENSG00000102003		Mental retardation, X-linked 96, 300802 (3), X-linked dominant	Syp (MGI:98467)
chrX	49205062	49233403	Xp11.23	Xp11.23	300110	CACNA1F, CSNB2, CORDX3, CSNB2A, AIED, OA2	Calcium channel, voltage-dependent, alpha-1F subunit	CACNA1F	778	ENSG00000102001		Aland Island eye disease, 300600 (3), X-linked; Cone-rod dystrophy, X-linked, 3, 300476 (3), X-linked recessive; Night blindness, congenital stationary (incomplete), 2A, X-linked, 300071 (3), X-linked	Cacna1f (MGI:1859639)
chrX	49235466	49250525	Xp11.23	Xp11.23	300859	CCDC22, RTSC2	Coiled-coil domain-containing protein 22	CCDC22	28952	ENSG00000101997		Ritscher-Schinzel syndrome 2, 300963 (3), X-linked recessive	Ccdc22 (MGI:1859608)
chrX	49250435	49264931	Xp11.23-q13.3	Xp11.23	300292	FOXP3, IPEX, AIID, XPID, PIDX	Forkhead box P3 (scurfin)	FOXP3	50943	ENSG00000049768		{Diabetes mellitus, type I, susceptibility to}, 222100 (3), Autosomal recessive; Immunodysregulation, polyendocrinopathy, and enteropathy, X-linked, 304790 (3), X-linked recessive	Foxp3 (MGI:1891436)
chrX	49303645	49319843	Xp11.23	Xp11.23	300737	GAGE10	G antigen 10	GAGE10	102724473	ENSG00000215274			
chrX	49322029	49329386	Xp11.23	Xp11.23	300733	GAGE12J	G antigen 12J	GAGE12J	729396	ENSG00000224659			
chrX	49331602	49338951	Xp11.23	Xp11.23	300734	GAGE13	G antigen 13	GAGE13	645051	ENSG00000274274			
chrX	49532176	49539540	Xp11.23	Xp11.23	300727	GAGE12C	G antigen 12C	GAGE12C	729422	ENSG00000237671			
chrX	49541721	49549106	Xp11.23	Xp11.23	300728	GAGE12D	G antigen 12D	GAGE12D	100132399	ENSG00000227488			
chrX	49551288	49558648	Xp11.23	Xp11.23	300729	GAGE12E	G antigen 12E	GAGE12E	729431	ENSG00000216649			
chrX	49560807	49568207	Xp11.23	Xp11.23	300730	GAGE12F	G antigen 12F	GAGE12F	100008586	ENSG00000236362			
chrX	49570396	49577756	Xp11.23	Xp11.23	300731	GAGE12G	G antigen 12G	GAGE12G	645073	ENSG00000215269			
chrX	49579948	49587303	Xp11.23	Xp11.23	300732	GAGE12H	G antigen 12H	GAGE12H	729442	ENSG00000224902			
chrX	49589514	49596826	Xp11.23	Xp11.23	300720	GAGE2A	G antigen 2A	GAGE2A	729447	ENSG00000189064			
chrX	49598991	49608535	Xp11.23	Xp11.23	300594	GAGE1	G antigen 1	GAGE1	2543	ENSG00000205777			
chrX	49687449	49696018	Xp11.23	Xp11.23	300288	GAGEB1, PAGE1	P antigen family, member 1	PAGE1	8712	ENSG00000068985			
chrX	49829259	49834263	Xp11.23	Xp11.23	300287	PAGE4, GAGEC1	P antigen family, member 4	PAGE4	9506	ENSG00000101951			
chrX	49879866	49882564	Xp11.2	Xp11.23	300975	USP27X, USP22L, MRX105	Ubiquitin-specific protease 27, X-linked	USP27X	389856	ENSG00000273820		Mental retardation 105, 300984 (3), X-linked recessive	Usp27x (MGI:1859645)
chrX	49922614	50099234	Xp11.22	Xp11.23	300008	CLCN5, CLCK2, NPHL2, DENTS, NPHL1	Chloride channel-5	CLCN5	1184	ENSG00000171365		Dent disease, 300009 (3), X-linked recessive; Hypophosphatemic rickets, 300554 (3), X-linked recessive; Nephrolithiasis, type I, 310468 (3), X-linked recessive; Proteinuria, low molecular weight, with hypercalciuric nephrocalcinosis, 308990 (3), X-linked recessive	Clcn5 (MGI:99486)
chrX	50014597	50014682	Xp11.23	Xp11.23	300893	MIR502	Micro RNA 502	MIR502	574504				
chrX	50100000	54800000	Xp11.22		300705	DUPXp11.22, MRX17, MRX31	Xp11.22 microduplication syndrome				minimal duplicated region 228 kb overlapping HUWE1 and HSD17B10	Xp11.22 microduplication syndrome, 300705 (4)	
chrX	50100000	54800000	Xp11.22		300704	HPCX2	Prostate cancer, hereditary, X-linked 2		100188769		associated with rs5945572	{Prostate cancer, hereditary, X-linked 2}, 300704 (2)	
chrX	50100000	54800000	Xp11.22		300856	HYSP4	Hypospadias 4, X-linked, susceptibility to		100689214		associated with rs1934179 and rs7063116	{Hypospadias 4, X-linked, susceptibility to}, 300856 (2)	
chrX	50190767	50201012	Xp11.2	Xp11.22	300185	AKAP4, AKAP82, HI, FSC1	A-kinase anchor protein 4, 82kD	AKAP4	8852	ENSG00000147081			Akap4 (MGI:102794)
chrX	50202712	50351913	Xp11.22	Xp11.22	300456	CCNB3	Cyclin B3	CCNB3	85417	ENSG00000147082			Ccnb3 (MGI:2183443)
chrX	50365406	50470850	Xp11.22	Xp11.22	300837	DGKK	Diacylglycerol kinase, kappa, 142kD	DGKK	139189	ENSG00000274588			Dgkk (MGI:3580254)
chrX	50575533	50814163	Xp11.2	Xp11.22	300579	SHROOM4, KIAA1202, SDSX	Shroom family member 4	SHROOM4	57477	ENSG00000158352		Stocco dos Santos X-linked mental retardation syndrome, 300434 (3), X-linked	Shroom4 (MGI:2685570)
chrX	50910734	50916640	Xp11.2	Xp11.22	300247	BMP15, GDF9B, ODG2, POF4	Bone morphogenetic protein 15	BMP15	9210	ENSG00000130385		Ovarian dysgenesis 2, 300510 (3), X-linked; Premature ovarian failure 4, 300510 (3), X-linked	Bmp15 (MGI:1316745)
chrX	51332230	51337524	Xp11.23	Xp11.22	300527	NUDT10, DIPP3A, APS2	Nucleoside diphosphate-linked moiety X motif 10	NUDT10	170685	ENSG00000122824			
chrX	51490010	51496606	Xp11.23	Xp11.22	300528	NUDT11, DIPP3B, APS1	Nucleoside diphosphate-linked moiety X motif 11	NUDT11	55190	ENSG00000196368			Nudt11,Nudt10 (MGI:2147931,MGI:1930957)
chrX	51743384	51746231	Xp11.23-p11.21	Xp11.22	300418	GSPT2, GST2, ERF3B	G1- to S-phase transition 2	GSPT2	23708	ENSG00000189369			Gspt2 (MGI:1316727)
chrX	51802997	51902353	Xp11.23	Xp11.22	300224	MAGED1	Melanoma antigen, family D, 1	MAGED1	9500	ENSG00000179222			Maged1 (MGI:1930187)
chrX	52061826	52069271	Xp11	Xp11.22	300765	MAGED4B	Melanoma antigen, family D, 4B	MAGED4B	81557	ENSG00000187243			
chrX	52184822	52192267	Xp11	Xp11.22	300702	MAGED4, MAGEE1, KIAA1859	Melanoma antigen, family D, 4	MAGED4	728239	ENSG00000154545			
chrX	52368995	52375682	Xp11.22	Xp11.22	300416	XAGE2, GAGED3	X antigen family, member 2	XAGE2	9502	ENSG00000155622			
chrX	52495667	52500814	Xp11.22	Xp11.22	300742	XAGE1A	X antigen family, member 1A	XAGE1A	653220	ENSG00000204379			
chrX	52495667	52500814	Xp11.22	Xp11.22	300743	XAGE1B	X antigen family, member 1B	XAGE1A	653220	ENSG00000204379			
chrX	52512073	52517220	Xp11.22	Xp11.22	300744	XAGE1C	X antigen family, member 1C	XAGE1B	653067	ENSG00000204382			
chrX	52512073	52517220	Xp11.22	Xp11.22	300745	XAGE1E	X antigen family, member 1E	XAGE1B	653067	ENSG00000204382			
chrX	52512073	52517220	Chr.X	Xp11.22	300289	GAGED2, XAGE1	G antigen, family D, 2	XAGE1B	653067	ENSG00000204382			
chrX	52622934	52633947	Xp11.22	Xp11.22	300543	SSX8	Sarcoma, synovial, X breakpoint 8	SSX8	280659				
chrX	52644060	52654899	Xp11.22	Xp11.22	300542	SSX7	Sarcoma, synovial, X breakpoint 7	SSX7	280658	ENSG00000187754			
chrX	52696895	52707226	Xp11.22	Xp11.22	300192	SSX2	Sarcoma, synovial, X breakpoint 2	SSX2	6757	ENSG00000241476		?Sarcoma, synovial, 300813 (3)	
chrX	52796145	52797347	Xp11	Xp11.22	300668	SPANXN5	SPANX family, member N5	SPANXN5	494197	ENSG00000204363			
chrX	52862527	52868139	Xp11.22	Xp11.22	300740	XAGE3, PLAC6	X antigen family, member 3	XAGE3	170626	ENSG00000171402			
chrX	53049323	53080614	Xp11.22	Xp11.22	300253	GPR173, SREB3	G protein-coupled receptor 173	GPR173	54328	ENSG00000184194			Gpr173 (MGI:1918021)
chrX	53082359	53088545	Xp11.2	Xp11.22	300564	TSPYL2, CDA1, DENTT, CINAP	TSPY-like 2	TSPYL2	64061	ENSG00000184205			Tspyl2 (MGI:106244)
chrX	53159734	53225421	Xp11.22-p11.21	Xp11.22	314690	KDM5C, JARID1C, SMCX, DXS1272E, XE169, MRXSCJ	Lysine-specific demethylase 5C (Jumonji, AT-rich interactive domain 1C)	KDM5C	8242	ENSG00000126012	escapes inactivation	Mental retardation, X-linked, syndromic, Claes-Jensen type, 300534 (3), X-linked recessive	Kdm5c (MGI:99781)
chrX	53225783	53321355	Xp11.22	Xp11.22	300522	IQSEC2, KIAA0522, MRX1, MRX78	IQ motif- and Sec7 domain-containing protein 2	IQSEC2	23096	ENSG00000124313		Mental retardation, X-linked 1/78, 309530 (3), X-linked dominant	Iqsec2 (MGI:3528396)
chrX	53374148	53422727	Xp11.22-p11.21	Xp11.22	300040	SMC1A, SMC1L1, SMC1, DXS423E, KIAA0178, CDLS2	Segregation of mitotic chromosomes 1 (SMC1, yeast, homolog of; DXS423E; SB1.8)	SMC1A	8243	ENSG00000072501	escapes lyonization	Cornelia de Lange syndrome 2, 300590 (3), X-linked dominant	Smc1a (MGI:1344345)
chrX	53431257	53434375	Xp11.2	Xp11.22	300256	HSD17B10, HADH2, ERAB, MRXS10, HSD10MD	17-beta-hydroxysteroid dehydrogenase X	HSD17B10	3028	ENSG00000072506		HSD10 mitochondrial disease, 300438 (3), X-linked dominant	Hsd17b10 (MGI:1333871)
chrX	53532095	53686728	Xp11.2	Xp11.22	300697	HUWE1, UREB1, KIAA0312, LASU1	HECT, UBA, and WWE domains-containing protein 1	HUWE1	10075	ENSG00000086758		Mental retardation, X-linked syndromic, Turner type, 300706 (3)	Huwe1 (MGI:1926884)
chrX	53556222	53556340	Xp11.22	Xp11.22	300810	MIR98, MIRN98	Micro RNA 98	MIR98	407054				
chrX	53557191	53557273	Xp11.22	Xp11.22	300721	MIRLET7F2, LET7F2, MIRNLET7F2	Micro RNA Let7f2	MIRLET7F2	406889				
chrX	53936679	54048934	Xp11.2	Xp11.22	300560	PHF8, ZNF422, KIAA1111, MRXSSD	PHD finger protein 8	PHF8	23133	ENSG00000172943		Mental retardation syndrome, X-linked, Siderius type, 300263 (3), X-linked recessive	Phf8 (MGI:2444341)
chrX	54068323	54183283	Xp11.2	Xp11.22	300741	FAM120C, CXorf17	Family with sequence similarity 120, member C	FAM120C	54954	ENSG00000184083			Fam120c (MGI:2387687)
chrX	54192822	54358694	Xp11.2	Xp11.22	300358	WNK3, PRKWNK3, KIAA1566	WNK lysine deficient protein kinase 3	WNK3	65267	ENSG00000196632			Wnk3 (MGI:2652875)
chrX	54440374	54448031	Xp11.22	Xp11.22	300945	TSR2, WGG1, DBA14	TSR2, 20S rRNA accumulation, S. cerevisiae, homolog of	TSR2	90121	ENSG00000158526	mutation identified in 1 DBA14 family	?Diamond-Blackfan anemia 14 with mandibulofacial dysostosis, 300946 (3), X-linked recessive	Tsr2 (MGI:1916749)
chrX	54445453	54496165	Xp11.21	Xp11.22	300546	FGD1, FGDY, AAS, MRXS16	FYVE, RhoGEF, and PH domain-containing protein 1	FGD1	2245	ENSG00000102302		Aarskog-Scott syndrome, 305400 (3), X-linked recessive; Mental retardation, X-linked syndromic 16, 305400 (3), X-linked recessive	Fgd1 (MGI:104566)
chrX	54530210	54567286	Xp11.22	Xp11.22	300873	GNL3L	Guanine nucleotide binding protein-like 3-like protein	GNL3L	54552	ENSG00000130119			Gnl3l (MGI:2448557)
chrX	54800000	109400000	Xp11.21-q22.3		300504	MRX52	Mental retardation, X-linked 52	ATRX	546	ENSG00000085224	max lod at DXS559	Mental retardation, X-linked 52, 300504 (2), X-linked recessive	
chrX	54807598	54816014	Xp11.2	Xp11.21	300470	MAGED2, MAGED, BARTS5	Melanoma antigen, family D, 2	MAGED2	10916	ENSG00000102316		Bartter syndrome, type 5, antenatal, transient, 300971 (3), X-linked recessive	Maged2 (MGI:1933391)
chrX	54814369	54814499	Xp11.21	Xp11.21	300662	SNORA11	Small nucleolar RNA, H/ACA box, 11	SNORA11	677799		in intron 1 of MAGED2		
chrX	54920562	54931435	Xp11.22-p11.21	Xp11.21	300132	TRO	Trophinin	TRO	7216	ENSG00000067445			Tro (MGI:1928994)
chrX	54933133	55000051	Xp11.21	Xp11.21	311790	PFKFB1, PFRX	Fructose-2,6-bisphosphatase	PFKFB1	5207	ENSG00000158571	?Xq27-q25; ?Xcen-q13		Pfkfb1 (MGI:107816)
chrX	55000322	55007872	Xp11.21	Xp11.21	300773	APEX2, APE2, XTH2, APEXL2	APEX nuclease (apurinic/apyrimidinic endonuclease) 2	APEX2	27301	ENSG00000169188			Apex2 (MGI:1924872)
chrX	55009054	55031063	Xp11.21	Xp11.21	301300	ALAS2, ANH1, ASB, XLEPP, XLSA, SIDBA1	Aminolevulinate, delta-, synthase-2	ALAS2	212	ENSG00000158578		Anemia, sideroblastic, 1, 300751 (3), X-linked recessive; Protoporphyria, erythropoietic, X-linked, 300752 (3), X-linked dominant	Alas2 (MGI:87990)
chrX	55089051	55092835	Xp11.21	Xp11.21	300738	PAGE2, GAGEC2	P antigen family, member 2	PAGE2	203569	ENSG00000234068			
chrX	55220346	55224107	Xp11.21	Xp11.21	301009	PAGE5, CT16, GAGEE1	P antigen family, member 5	PAGE5	90737	ENSG00000158639			
chrX	55257600	55264915	Xp11.21	Xp11.21	300739	PAGE3, GAGEC1	P antigen family, member 3	PAGE3	139793	ENSG00000204279			
chrX	55452088	55453567	Xp11.21	Xp11.21	300548	MAGEH1, MAGEH	Melanoma antigen, family H, 1	MAGEH1	28986	ENSG00000187601			Mageh1 (MGI:1922875)
chrX	55623399	55626187	Xp11.21	Xp11.21	300949	FOXR2, FOXN6	Forkhead box R2	FOXR2	139628	ENSG00000189299			Foxr2 (MGI:3511682)
chrX	55717676	55760208	Xp11.21	Xp11.21	300725	RRAGB, RAGB	Ras-related GTP-binding protein B	RRAGB	10325	ENSG00000083750			Rragb (MGI:3038613)
chrX	55908122	56291530	Chr.X	Xp11.21	300286	KLF8, ZNF741, BKLF3	Kruppel-like factor 8	KLF8	11279	ENSG00000102349			Klf8 (MGI:2442430)
chrX	56563592	56567009	Xp11.23-p11.1	Xp11.21	300264	UBQLN2, PLIC2, CHAP1, ALS15	Ubiquilin 2	UBQLN2	29978	ENSG00000188021		Amyotrophic lateral sclerosis 15, with or without frontotemporal dementia, 300857 (3), X-linked dominant	Ubqln2 (MGI:1860283)
chrX	56729218	56819178	Xp11.1	Xp11.21	300992	NBDY, LINC01420, NOBODY	Negative regulator of P-body association	NBDY	550643	ENSG00000204272			
chrX	57112141	57121904	Xp11.21	Xp11.21	300517	SPIN2	Spindlin family, member 2	SPIN2B	474343	ENSG00000186787			Gm21637,Spin2e,Spin2d,Gm5923,Gm3757,Gm5926,Gm2854,Spin2-ps4,Gm2892,Spin2-ps1,Gm21466,Spin2-ps3,Spin2-ps2 (MGI:1922101,MGI:3781932,MGI:3645924,MGI:3650966,MGI:3645574,MGI:5434847,MGI:5434821,MGI:3781070,MGI:3647272,MGI:3781026,MGI:3805546,MGI:5434992,MGI:3705652)
chrX	57121860	57489195	Xp11	Xp11.21	300654	FAAH2	Fatty acid amide hydrolase 2	FAAH2	158584	ENSG00000165591			
chrX	57133042	57138687	Xp11.21	Xp11.21	300621	DSF34	DXF34 gene	SPIN2A	54466	ENSG00000147059			Gm21637,Spin2e,Spin2d,Gm5923,Gm3757,Gm5926,Gm2854,Spin2-ps4,Gm2892,Spin2-ps1,Gm21466,Spin2-ps3,Spin2-ps2 (MGI:1922101,MGI:3781932,MGI:3645924,MGI:3650966,MGI:3645574,MGI:5434847,MGI:5434821,MGI:3781070,MGI:3647272,MGI:3781026,MGI:3805546,MGI:5434992,MGI:3705652)
chrX	57591835	57597476	Xp11.21	Xp11.21	300236	ZXDB	Zinc finger-encoding gene, X-linked, duplicated, B	ZXDB	158586	ENSG00000198455			Zxdb (MGI:3694898)
chrX	57905429	57910632	Xp11.21	Xp11.21	300235	ZXDA	Zinc finger-encoding gene, X-linked, duplicated, A	ZXDA	7789	ENSG00000198205			
chrX	61000000	68500000	Xq11-q12		300710	AGA2	Alopecia, androgenetic, 2		100188771		associated with rs6152	Alopecia, androgenetic, 2, 300710 (2)	
chrX	61000000	156040895	Xq		300082	CGF1	Cognitive function-1, social	CGF1	1083		imprinted locus	[Social cognition], 300082 (2), X-linked	
chrX	61000000	156040895	Xq		300010	DXS435E, A11	A-11 gene		8248				
chrX	61000000	156040895	Xq		300125	MGR2	Migraine, familial typical, susceptibility to, 2		8249			{Migraine, familial typical, susceptibility to, 2}, 300125 (2), X-linked	
chrX	61000000	156040895	Xq		300259	MTBSX	Mycobacterium tuberculosis, susceptibility to, X-linked		57789			{Mycobacterium tuberculosis, susceptibility, X-linked}, 300259 (2)	
chrX	63634966	63785545	Xq22.1	Xq11.1	300429	ARHGEF9, PEM2, KIAA0424, EIEE8	Rho guanine nucleotide exchange factor 9	ARHGEF9	23229	ENSG00000131089		Epileptic encephalopathy, early infantile, 8, 300607 (3), X-linked recessive	Arhgef9 (MGI:2442233)
chrX	63800000	65400000	Xq11.2		300266	SPG16	Spastic paraplegia 16, X-linked, complicated	SPG16	57760			Spastic paraplegia 16, X-linked, complicated, 300266 (2), X-linked recessive	
chrX	64185116	64205743	Xq11.1	Xq11.2	300647	AMER1, FAM123B, WTX, OSCS	APC membrane recruitment protein 1	AMER1	139285	ENSG00000184675		Osteopathia striata with cranial sclerosis, 300373 (3), X-linked dominant	Amer1 (MGI:1919595)
chrX	64224191	64230630	Xq11.2	Xq11.2	300891	ASB12	Ankyrin repeat- and SOCS box-containing protein 12	ASB12	142689	ENSG00000198881			Asb12 (MGI:1917642)
chrX	64915801	65034743	Xq11.2	Xq11.2	300897	ZC4H2, KIAA1166, WRWF	Zinc finger C4H2 domain-containing protein	ZC4H2	55906	ENSG00000126970		Wieacker-Wolff syndrome, 314580 (3), X-linked recessive	Zc4h2 (MGI:2679294)
chrX	65034814	65507886	Xq12	Xq11-q12	300889	ZC3H12B, MCPIP2	Zinc finger CCCH domain-containing protein 12B	ZC3H12B	340554	ENSG00000102053			Zc3h12b (MGI:2442133)
chrX	65400000	99100000	Xq12-q21.3		300454	MRX77	Mental retardation, X-linked 77	MRX77	93991			Mental retardation, X-linked 77, 300454 (2), X-linked recessive	
chrX	65400000	92700000	Xq12-q21.31		300709	MRXS9	Mental retardation, X-linked, syndromic 9				between DXS1111 and DXS1197	Mental retardation, X-linked, syndromic 9, 300709 (2)	
chrX	65512581	65534805	Xq12	Xq12	300964	LAS1L, WTS	Las1-like ribosome biogenesis factor	LAS1L	81887	ENSG00000001497		Wilson-Turner syndrome, 309585 (3), X-linked recessive	Las1l (MGI:1923380)
chrX	65588381	65741930	Xq11.2-q12	Xq12	309845	MSN, IMD50	Moesin	MSN	4478	ENSG00000147065		Immunodeficiency 50, 300988 (3), X-linked recessive	Msn (MGI:97167)
chrX	66018869	66018978	Xq12	Xq12	300694	MIR223, MIRN223	Micro RNA 223	MIR223	407008				
chrX	66021737	66040124	Xq12	Xq12	300353	Z39IG	Immunoglobulin superfamily protein Z39IG	VSIG4	11326	ENSG00000155659			Vsig4 (MGI:2679720)
chrX	66162525	66267388	Xq11-q12	Xq12	300167	HEPH	Hephaestin	HEPH	9843	ENSG00000089472			Heph (MGI:1332240)
chrX	66594383	66639302	Xq12	Xq12	300276	EDAR2, XEDAR, EDAA2R	Ectodysplasin A2 receptor	EDA2R	60401	ENSG00000131080			Eda2r (MGI:2442860)
chrX	67544622	67730618	Xq11-q12	Xq12	313700	AR, DHTR, TFM, SBMA, KD, SMAX1, HYSP1	Androgen receptor (dihydrotestosterone receptor)	AR	367	ENSG00000169083		Androgen insensitivity, 300068 (3), X-linked recessive; Androgen insensitivity, partial, with or without breast cancer, 312300 (3), X-linked recessive; Hypospadias 1, X-linked, 300633 (3), X-linked recessive; {Prostate cancer, susceptibility to}, 176807 (3), Autosomal dominant; Spinal and bulbar muscular atrophy of Kennedy, 313200 (3), X-linked recessive	Ar (MGI:88064)
chrX	68042343	68433840	Xq12	Xq12	300127	OPHN1, MRX60	Oligophrenin-1	OPHN1	4983	ENSG00000079482		Mental retardation, X-linked, with cerebellar hypoplasia and distinctive facial appearance, 300486 (3), X-linked recessive	Ophn1 (MGI:2151070)
chrX	68498361	68572458	Xq12-q13.1	Xq12-q13	300996	YIPF6	YIP1 domain family, member 6	YIPF6	286451	ENSG00000181704			Yipf6 (MGI:1925179)
chrX	68500000	103300000	Xq13.1-q22.1		300580	CFTDX	Myopathy, congenital, with fiber-type disproportion, X-linked		100188765		between DXS8019 and DXS99	Myopathy, congenital, with fiber-type disproportion, X-linked, 300580 (2), X-linked dominant	
chrX	68500000	109400000	Xq13-q22		309605	MCS, MRXS4	Miles-Carpenter syndrome (mental retardation, X-linked, syndromic 4, with congenital contractures and low fingertip arches)				linked to DXYS1	Miles-Carpenter syndrome, 309605 (2)	
chrX	68647668	68725841	Xq13.1	Xq13.1	300689	STARD8, DLC3, STARTGAP3, KIAA0189	START domain-containing protein 8	STARD8	9754	ENSG00000130052			Stard8 (MGI:2448556)
chrX	68828996	68842163	Xq12	Xq13.1	300035	EFNB1, EPLG2, CFNS, CFND	eph-related receptor tyrosine kinase ligand 2 (ephrin B1)	EFNB1	1947	ENSG00000090776	?CFNS also on Xp22	Craniofrontonasal dysplasia, 304110 (3), X-linked dominant	Efnb1 (MGI:102708)
chrX	69160737	69165521	Xq13.1	Xq13.1	300420	PJA1	Praja 1	PJA1	64219	ENSG00000181191			Pja1 (MGI:1101765)
chrX	69616066	70039471	Xq12-q13.1	Xq13.1	300451	EDA, ED1, ECTD1, HED1, STHAGX1	Ectodysplasin A	EDA	1896	ENSG00000158813		Ectodermal dysplasia 1, hypohidrotic, X-linked, 305100 (3), X-linked recessive; Tooth agenesis, selective, X-linked 1, 313500 (3), X-linked dominant	
chrX	70040541	70049969	Xq13.1	Xq13.1	300925	AWAT2, DC4, MFAT	Acyl-CoA wax alcohol acyltransferase 2	AWAT2	158835	ENSG00000147160			Awat2 (MGI:3045345)
chrX	70062490	70064178	Xq13.1	Xq13.1	300714	OTUD6A, DUBA2	OTU domain-containing protein 6A	OTUD6A	139562	ENSG00000189401			Otud6a (MGI:3644685)
chrX	70133448	70166323	Xq13.1-q13.3	Xq13.1	300139	IGBP1	Immunoglobulin-binding protein 1	IGBP1	3476	ENSG00000089289		Corpus callosum, agenesis of, with mental retardation, ocular coloboma and micrognathia, 300472 (3), X-linked recessive	Igbp1 (MGI:1346500)
chrX	70177482	70205702	Xq13.1	Xq13.1	300926	DGAT2L6, DC3	Diacylglycerol O-acyltransferase 2-like 6	DGAT2L6	347516	ENSG00000184210			Dgat2l6 (MGI:3045268)
chrX	70233488	70240660	Xq13.1	Xq13.1	300924	AWAT1, DGA2	Acyl-CoA wax alcohol acyltransferase 1	AWAT1	158833	ENSG00000204195			Awat1 (MGI:3588200)
chrX	70258165	70259803	Xq13	Xq13.1	300038	P2RY4, NRU, P2Y4	Pyrimidinergic receptor P2Y, G-protein coupled, 4	P2RY4	5030	ENSG00000186912			P2ry4 (MGI:1926594)
chrX	70268334	70281839	Xcen-q21	Xq13.1	301770	ARR3, MYP26	Arrestin 3, retinal	ARR3	407	ENSG00000120500		Myopia 26, X-linked, female-limited, 301010 (3), X-linked	Arr3 (MGI:2159617)
chrX	70286360	70289957	Xq13.1	Xq13.1	300632	PDZD11, AIPP1, PISP	PDZ domain-containing 11	PDZD11	51248	ENSG00000120509			Pdzd11 (MGI:1919871)
chrX	70290028	70420923	Xq13.1	Xq13.1	300521	KIF4A, KIF4, MRX100	Kinesin family member 4A	KIF4A	24137	ENSG00000090889	mutation identified in 1 MRX100 family	?Mental retardation, X-linked 100, 300923 (3), X-linked recessive	Kif4 (MGI:108389)
chrX	70423030	70433390	Xq13.1	Xq13.1	300940	GDPD2, GDE3	Glycerophosphodiester phosphodiesterase domain-containing protein 2	GDPD2	54857	ENSG00000130055			Gdpd2 (MGI:1918834)
chrX	70444849	70505489	Xq13.1	Xq13.1	300189	DLG3, NEDLG, SAP102, MRX90	Discs large, Drosophila, homolog of, 3	DLG3	1741	ENSG00000082458		Mental retardation, X-linked 90, 300850 (3), X-linked recessive	Dlg3 (MGI:1888986)
chrX	70511226	70908716	Xq13.1	Xq13.1	300311	TEX11, SPGFX2	Testis-expressed gene 11	TEX11	56159	ENSG00000120498		Spermatogenic failure, X-linked, 2, 309120 (3), X-linked recessive	Tex11 (MGI:1933237)
chrX	70925578	70931124	Xq13.1	Xq13.1	300443	SLC7A3, CAT3	Solute carrier family 7 (cationic amino acid transporter, y+ system), member 3	SLC7A3	84889	ENSG00000165349			Slc7a3 (MGI:1100521)
chrX	71059246	71073425	Xq13.1	Xq13.1	300883	SNX12	Sorting nexin 12	SNX12	29934	ENSG00000147164			Snx12 (MGI:1919331)
chrX	71096148	71103533	Xq13.1	Xq13.1	300033	FOXO4, MLLT7, AFX1	Forkhead box O4	FOXO4	4303	ENSG00000184481			Foxo4 (MGI:1891915)
chrX	71107403	71111630	Xq13	Xq13.1	308380	IL2RG, SCIDX1, SCIDX, IMD4	Interleukin-2 receptor, gamma	IL2RG	3561	ENSG00000147168	linked to DXS159	Combined immunodeficiency, X-linked, moderate, 312863 (3), X-linked recessive; Severe combined immunodeficiency, X-linked, 300400 (3), X-linked recessive	Il2rg (MGI:96551)
chrX	71118555	71142453	Xq13	Xq13.1	300188	MED12, TNRC11, TRAP230, HOPA, KIAA0192, OKS, FGS1, OHDOX	Mediator of RNA polymerase II transcription, subunit 12, S. cerevisiae, homolog of	MED12	9968	ENSG00000184634		Lujan-Fryns syndrome, 309520 (3), X-linked recessive; Ohdo syndrome, X-linked, 300895 (3), X-linked recessive; Opitz-Kaveggia syndrome, 305450 (3), X-linked recessive	Med12 (MGI:1926212)
chrX	71144388	71175306	Xq13	Xq13.1	300336	NLGN3, ASPGX1, AUTSX1	Neuroligin 3	NLGN3	54413	ENSG00000196338		{Asperger syndrome susceptibility, X-linked 1}, 300494 (3), Isolated cases, X-linked, Multifactorial; {Autism susceptibility, X-linked 1}, 300425 (3), Isolated cases, X-linked, Multifactorial	Nlgn3 (MGI:2444609)
chrX	71215211	71225214	Xq13.1	Xq13.1	304040	GJB1, CX32, CMTX1	Gap junction protein, beta-1, 32kD (connexin 32)	GJB1	2705	ENSG00000169562		Charcot-Marie-Tooth neuropathy, X-linked dominant, 1, 302800 (3), X-linked dominant	Gjb1 (MGI:95719)
chrX	71239623	71255196	Xq13.1	Xq13.1	300061	ZMYM3, ZNF261, DXS6673E	Zinc finger, MYM-type 3	ZMYM3	9203	ENSG00000147130			Zmym3 (MGI:1927231)
chrX	71283191	71301167	Xq13.1	Xq13.1	300084	NONO, NRB54, MRXS34	Non-Pou domain-containing octamer (ATGCAAAT) binding protein (nuclear RNA-binding protein, 54-kD)	NONO	4841	ENSG00000147140	2Mb proximal to PHKA1	Mental retardation, X-linked, syndromic 34, 300967 (3), X-linked	Nono (MGI:1855692)
chrX	71301733	71305370	Xq12-q13	Xq13.1	300332	ITGB1BP2	Integrin, beta-1, binding protein of, 2	ITGB1BP2	26548	ENSG00000147166			Itgb1bp2 (MGI:1353420)
chrX	71366219	71530524	Xq13	Xq13.1	313650	TAF1, TAF2A, CCG1, BA2R, DYT3, MRXS33	TAF1 RNA polymerase II, TATA box-binding protein-associated factor, 250kD	TAF1	6872	ENSG00000147133	SVA retrotransposon insertion	Dystonia-Parkinsonism, X-linked, 314250 (3), X-linked recessive; Mental retardation, X-linked, syndromic 33, 300966 (3), X-linked recessive	Taf1 (MGI:1336878)
chrX	71491680	71492448	Xq12	Xq13.1	300452	INGX, ING2	Inhibitor of growth, X-linked	INGX	27160				
chrX	71533061	71575896	Xq13	Xq13.1	300255	OGT, MRX106	O-linked N-acetylglucosamine transferase	OGT	8473	ENSG00000147162		Mental retardation, X-linked 106, 300997 (3), X-linked recessive	Ogt (MGI:1339639)
chrX	71578023	71613582	Xq13.1	Xq13.1	300369	ACRC	Acidic repeat-containing gene	GCNA	93953	ENSG00000147174			
chrX	71615912	71618516	Xq13	Xq13.1	300574	CXCR3, GPR9, CD182	Chemokine, C-X-C motif, receptor 3 (G protein-coupled receptor-9)	CXCR3	2833	ENSG00000186810	previously assigned to chr.8		Cxcr3 (MGI:1277207)
chrX	72181675	72263963	Xq13	Xq13.1	300252	PIN4, PAR14, EPVH	Peptidyl-prolyl cis/trans isomerase, nima-interacting, 4	PIN4	5303	ENSG00000102309			Pin4 (MGI:1916963)
chrX	72204654	72239046	Xq13.1	Xq13.1	300687	ERCC6L, PICH	ERCC6-like	ERCC6L	54821	ENSG00000186871			Ercc6l (MGI:2654144)
chrX	72272602	72277290	Xq13.1	Xq13.1	312760	RPS4X, CCG2, SCAR	Ribosomal protein S4, X-linked	RPS4X	6191	ENSG00000198034	cen-RPS4X-PHKA1-XIST-qter in 2.6Mb		
chrX	72301637	72307186	Xq13.1	Xq13.1	300149	MSG1	Melanocyte-specific gene 1	CITED1	4435	ENSG00000125931			Cited1 (MGI:108023)
chrX	72329515	72573102	Xq13	Xq13.1	300269	HDAC8, MRXS6, CDLS5	Histone deacetylase 8	HDAC8	55869	ENSG00000147099		Cornelia de Lange syndrome 5, 300882 (3), X-linked dominant	Hdac8 (MGI:1917565)
chrX	72578813	72714180	Xq13	Xq13.1	311870	PHKA1	Phosphorylase kinase, muscle, alpha polypeptide	PHKA1	5255	ENSG00000067177	?proximal and close to PGKA;	Muscle glycogenosis, 300559 (3), X-linked recessive	Phka1 (MGI:97576)
chrX	72872024	72943930	Xq13	Xq13.1	300878	DMRTC1	Doublesex- and MAB3-related transcription factor C1	DMRTC1	63947	ENSG00000269502			
chrX	73000000	74700000	Xq13.2		300262	MRXSAB	Abidi X-linked mental retardation syndrome		57792			Mental retardation, X-linked syndromic, Abidi type, 300262 (2)	
chrX	73212298	73214873	Xq13.2	Xq13.2	300026	NAP1L2, BPX	Nucleosome assembly protein 1-like 2	NAP1L2	4674	ENSG00000186462			Nap1l2 (MGI:106654)
chrX	73447253	73454584	Xq13.2	Xq13.2	300025	CDX4	Caudal type homeo box transcription factor 4	CDX4	1046	ENSG00000131264			Cdx4 (MGI:88362)
chrX	73563044	73687108	Xq13.2	Xq13.2	300922	CHIC1, BRX	Cystein-rich hydrophobic domain protein 1	CHIC1	53344	ENSG00000204116			Chic1 (MGI:1344694)
chrX	73792204	73829230	Xq13.2	Xq13.2	300181	TSIX	X-inactivation-specific transcript-antisense	TSIX	9383				
chrX	73820650	73852752	Xq13.2	Xq13.2	314670	XIC, XCE, XIST, SXI1	X chromosome controlling element (X-inactivation center)	XIST	7503		q13-q21; metaphase bend, or fold, at q13.3-q21.1	X-inactivation, familial skewed, 300087 (3)	
chrX	73944323	74070383	Xq13.2	Xq13.2	300832	NCRNA00183, JPX, ENOX	Noncoding RNA 183	JPX	554203				
chrX	74028135	74293573	Xq13.2	Xq13.2	300936	FTX, LINC00182	FTX transcript, XIST regulator, noncoding	FTX	100302692				
chrX	74421492	74533928	Xq13.2	Xq13.2	300095	SLC16A2, DXS128, XPCT	Solute carrier family 16 (monocarboxylic acid transporters), member 2	SLC16A2	6567	ENSG00000147100		Allan-Herndon-Dudley syndrome, 300523 (3), X-linked	Slc16a2 (MGI:1203732)
chrX	74582975	74614625	Xq13-q21	Xq13.2	300379	RNF12, RLIM, MRX61	Putative RING zinc finger protein NY-REN-43 antigen	RLIM	51132	ENSG00000131263		Mental retardation, X-linked 61, 300978 (3), X-linked recessive	Rlim (MGI:1342291)
chrX	74732855	74925451	Xq13.2	Xq13.3	300524	NEXMIF, KIAA2022, MRX98	Neurite extension and migration factor	NEXMIF	340533	ENSG00000050030	inv(X)(q13;p22)	Mental retardation, X-linked 98, 300912 (3), X-linked dominant	Nexmif (MGI:2148050)
chrX	75053279	75156339	Xq13.1-q13.3	Xq13.3	300135	ABCB7, ABC7, ASAT	ATP-binding cassette-7	ABCB7	22	ENSG00000131269		Anemia, sideroblastic, with ataxia, 301310 (3), X-linked recessive	Abcb7 (MGI:109533)
chrX	75156378	75304896	Xq13.3	Xq13.3	300656	UPRT	Uracil phosphoribosyltransferase, S. cerevisiae, homolog of	UPRT	139596	ENSG00000094841			Uprt (MGI:2685620)
chrX	75368426	75523501	Xq13.3	Xq13.3	300576	ZDHHC15, MRX91	Zinc finger DHHC domain-containing protein 15	ZDHHC15	158866	ENSG00000102383	disruption of ZDHHC15 identified in 1 patient	?Mental retardation, X-linked 91, 300577 (3), X-linked dominant	Zdhhc15 (MGI:1915336)
chrX	75582653	75586207	Xq13.3	Xq13.3	300956	BRAFP1	BRAF pseudogene 1	BRAFP1	286494				
chrX	75782987	75785243	Xq13.1	Xq13.3	300760	MAGEE2	Melanoma antigen, family E, 2	MAGEE2	139599	ENSG00000186675			Magee2 (MGI:2148316)
chrX	76427652	76431352	Xq13.1	Xq13.3	300759	MAGEE1, DAMAGE, KIAA1587	Melanoma antigen, family E, 1	MAGEE1	57692	ENSG00000198934			Magee1 (MGI:2148149)
chrX	76800000	99100000	Xq21		303110	DELXq21, CXDELq21	Chromosome Xq21 deletion syndrome				at least CHM and POU3F4 deleted	Choroideremia, deafness, and mental retardation, 303110 (4), X-linked recessive	
chrX	76800000	129500000	Xq21-q25		300557	PARK12	Parkinson disease-12	PARK12	677662		max lod with DXS1106, DXS8055, DXS1001	{Parkinson disease 12}, 300557 (2)	
chrX	77447674	77456521	Xq21.1	Xq21.1	300827	FGF16, MF4	Fibroblast growth factor 16	FGF16	8823	ENSG00000196468	previously mapped to 8q21.3	Metacarpal 4-5 fusion, 309630 (3), X-linked recessive	
chrX	77504877	77786268	Xq13	Xq21.1	300032	ATRX, XH2, XNP, SHS, SFM1, MRXHF1	ATR-X gene (helicase 2; X-linked nuclear protein)	ATRX	546	ENSG00000085224		Alpha-thalassemia myelodysplasia syndrome, somatic, 300448 (3); Alpha-thalassemia/mental retardation syndrome, 301040 (3), X-linked dominant; Mental retardation-hypotonic facies syndrome, X-linked, 309580 (3), X-linked recessive	
chrX	77826363	77895567	Xq13.1-q13.2	Xq21.1	300715	MAGT1, IAP, XMEN	Magnesium transporter 1	MAGT1	84061	ENSG00000102158		Immunodeficiency, X-linked, with magnesium defect, Epstein-Barr virus infection and neoplasia, 300853 (3)	Magt1 (MGI:1914325)
chrX	77899463	77905383	Xq21.1	Xq21.1	300885	COX7B, LSDMCA2	Cytochrome c oxidase, subunit VIIb	COX7B	1349	ENSG00000131174		Linear skin defects with multiple congenital anomalies 2, 300887 (3), X-linked dominant	Cox7b (MGI:1913392)
chrX	77910655	78050394	Xq12-q13	Xq21.1	300011	ATP7A, MNK, MK, OHS, SMAX3	ATPase, Cu++ transporting, alpha polypeptide	ATP7A	538	ENSG00000165240	probably Xq13.2-q13.3, ~150kb prox. to PGK1	Menkes disease, 309400 (3), X-linked recessive; Occipital horn syndrome, 304150 (3), X-linked recessive; Spinal muscular atrophy, distal, X-linked 3, 300489 (3), X-linked recessive	Atp7a (MGI:99400)
chrX	77967960	77969637	Xq13.3	Xq21.1	300567	PGAM4, PGAM3	Phosphoglycerate mutase family member 4	PGAM4	441531	ENSG00000226784			
chrX	78104168	78126826	Xq13	Xq21.1	311800	PGK1, PGKA	Phosphoglycerate kinase-1	PGK1	5230	ENSG00000102144	?Xq13.3; pseudogenes PGK1P1 on Xq, PGK1P2 on chr. 6	Phosphoglycerate kinase 1 deficiency, 300653 (3), X-linked recessive	Pgk1 (MGI:97555)
chrX	78129747	78139681	Xq13.1-q22.1	Xq21.1	300754	TAF9B, TAF9L, TAFII31L	TAF9B RNA polymerase II, TATA box-binding protein-associated factor, 31kD	TAF9B	51616	ENSG00000187325			Taf9b (MGI:3039562)
chrX	78271467	78327690	Xq13-q21	Xq21.1	300201	CYSLTR1, CYSLT1	Cysteinyl leukotriene receptor 1	CYSLTR1	10800	ENSG00000173198			Cysltr1 (MGI:1926218)
chrX	78747657	78758713	Xq13-q21.1	Xq21.1	300086	LPAR4, LPA4, P2RY9, P2Y9, GPR23	Lysophosphatidic acid receptor 4	LPAR4	2846	ENSG00000147145			Lpar4 (MGI:1925384)
chrX	78945331	78963726	Xq21.1	Xq21.1	300529	P2RY10, P2Y10	Purinergic receptor P2Y, G protein-coupled, 10	P2RY10	27334	ENSG00000078589			P2ry10 (MGI:1926076)
chrX	79170971	79172228	Xq21.1	Xq21.1	300903	GPR174, GPCR17	G protein-coupled receptor 174	GPR174	84636	ENSG00000147138			Gpr174 (MGI:2685222)
chrX	79360383	79367551	Xq13.3-q21.2	Xq21.1	300222	ITM2A, E25A	Integral membrane protein 2A	ITM2A	9452	ENSG00000078596			Itm2a (MGI:107706)
chrX	80014755	80031768	Xq12-q21	Xq21.1	300307	TBX22, CPX, ABERS	T-box 22	TBX22	50945	ENSG00000122145	1 ABERS family identified with mutation	?Abruzzo-Erickson syndrome, 302905 (3), X-linked; Cleft palate with ankyloglossia, 303400 (3), X-linked	Tbx22 (MGI:2389465)
chrX	80335438	80446884	Xq21.1	Xq21.1	300976	FAM46D	Family with sequence similarity 46, member D	FAM46D	169966	ENSG00000174016			Fam46d (MGI:2685223)
chrX	80669487	80809735	Xq13	Xq21.1	300553	BRWD3, MRX93	Bromodomain-and WD repeat-containing protein 3	BRWD3	254065	ENSG00000165288		Mental retardation, X-linked 93, 300659 (3), X-linked recessive	Brwd3 (MGI:3029414)
chrX	81113700	81201941	Xq13	Xq21.1	300385	NSBP1	Nucleosomal binding protein 1	HMGN5	79366	ENSG00000198157			
chrX	81201803	81298546	Xq13.3	Xq21.1	300190	SH3BGR	SH3-binding domain glutamic acid-rich protein-like	SH3BGRL	6451	ENSG00000131171			Sh3bgrl (MGI:1930849)
chrX	83508260	83509766	Xq21.1	Xq21.1	300039	POU3F4, DFN3, DFNX2	POU domain, class 3, transcription factor 4	POU3F4	5456	ENSG00000196767		Deafness, X-linked 2, 304400 (3), X-linked recessive	Pou3f4 (MGI:101894)
chrX	83861125	83886699	Xq21.1	Xq21.1	300768	CYLC1	Cylicin 1	CYLC1	1538	ENSG00000183035			
chrX	84058345	84187934	Xq21	Xq21.1	300303	RPS6KA6, RSK4	Ribosomal protein S6 kinase, 90kD, 6	RPS6KA6	27330	ENSG00000072133			Rps6ka6 (MGI:1914321)
chrX	84317873	84502577	Xq21.1	Xq21.1	300994	HDX, CXorf43	Highly divergent homeobox	HDX	139324	ENSG00000165259			Hdx (MGI:2685226)
chrX	85003851	85093316	Xq21.2	Xq21.1	300955	APOOL, FAM121A, Cxorf33	Apolipoprotein O-like	APOOL	139322	ENSG00000155008			Apool (MGI:1915367)
chrX	85243819	85273361	Xq21.1-q21.3	Xq21.1	314990	ZNF711, ZNF6, CMPX1, MRX97	Zinc finger protein-711	ZNF711	7552	ENSG00000147180		Mental retardation, X-linked 97, 300803 (3), X-linked	Zfp711 (MGI:3045342)
chrX	85277388	85379742	Xq21	Xq21.1	300603	FLJ22792, POF1B, POF2B	FLJ22792 gene	POF1B	79983	ENSG00000124429	mutation identified in 1 POF2B family	?Premature ovarian failure 2B, 300604 (3), X-linked recessive	Pof1b (MGI:1916943)
chrX	85861179	86047564	Xq21.2	Xq21.2	300390	CHM, TCD	Rab escort protein 1	CHM	1121	ENSG00000188419		Choroideremia, 303100 (3), X-linked dominant	Chm (MGI:892979)
chrX	86148450	86832601	Xq21.3	Xq21.2	300608	DACH2	Dachshund, Drosophila, homolog of, 2	DACH2	117154	ENSG00000126733			Dach2 (MGI:1890446)
chrX	87000000	99100000	Xq21.3		300756	AD16	Alzheimer disease 16		100271718		associated with rs5984894	{Alzheimer disease 16}, 300756 (2)	
chrX	87517711	87670049	Xq21.3	Xq21.31	300348	KLHL4	Kelch-like 4	KLHL4	56062	ENSG00000102271			Klhl4 (MGI:2442829)
chrX	89921940	89922882	Xp21.3	Xq21.31	300411	TGIF2LX, TGIFLX	Transforming growth factor-beta-induced factor 2-like, X-linked	TGIF2LX	90316	ENSG00000153779			Tgif2lx2,Tgif2lx1 (MGI:3800824,MGI:2387796)
chrX	91434597	91438583	Xq21.3	Xq21.31	300407	PABPC5, PABP5	Polyadenylate-binding protein, cytoplasmic, 5	PABPC5	140886	ENSG00000174740			Pabpc5 (MGI:2136401)
chrX	91779309	92623229	Xq21.3	Xq21.31	300246	PCDH11X, PCDH11, PCDHX	Protocadherin 11, X-linked	PCDH11X	27328	ENSG00000102290			Pcdh11x (MGI:2442849)
chrX	93670925	93673682	Xq21.3-q22	Xq21.32	300117	NAP1L3	Nucleosome assembly protein 1-like 3	NAP1L3	4675	ENSG00000186310			Nap1l3 (MGI:1859565)
chrX	94300000	117400000	Xq21.33-q23		300861	MRXSCS	Mental retardation, X-linked, syndromic, Chudley-Schwartz type		100820761		max lod at DXS1120	Mental retardation, X-linked, syndromic, Chudley-Schwartz type, 300861 (2), X-linked recessive	
chrX	96684662	97600597	Xq22	Xq21.33	300108	DIAPH2, DIA, POF2A	Diaphanous, Drosophila, homolog of, 2	DIAPH2	1730	ENSG00000147202	mutation identified in 1 POF2A family	?Premature ovarian failure 2A, 300511 (3), X-linked dominant	
chrX	96883907	96885466	Xq21.33	Xq21.33	300767	RPA4	Replication protein A4	RPA4	29935	ENSG00000204086			
chrX	97528363	97564534	Xq21-q22	Xq21.33	300347	EPAG	Early lymphoid activation gene	DIAPH2-AS1	10824				
chrX	99100000	156040895	Xq22-q28		301201	AI1E2, AIH3	Amelogenesis imperfecta, hypomaturation or hypoplastic type, X-linked 2	AIH3	201			?Amelogenesis imperfecta, type IE, X-linked 2, 301201 (2), X-linked	
chrX	100291643	100410272	Xq22	Xq22.1	300460	PCDH19, KIAA1313, EFMR, EIEE9	Protocadherin 19	PCDH19	57526	ENSG00000165194		Epileptic encephalopathy, early infantile, 9, 300088 (3), X-linked	Pcdh19 (MGI:2685563)
chrX	100584792	100599884	Xq22	Xq22.1	300459	TNMD, TEM, CHM1L	Tenomodulin	TNMD	64102	ENSG00000000005			Tnmd (MGI:1929885)
chrX	100627107	100637103	Xq22	Xq22.1	300191	TSPAN6, TM4SF6	Tetraspanin 6	TSPAN6	7105	ENSG00000000003			Tspan6 (MGI:1926264)
chrX	100644165	100671298	Xq21.33-q23	Xq22.1	300642	SRPX2, SRPUL, RESDX	SUSHI repeat-containing protein, X-linked, 2	SRPX2	27286	ENSG00000102359	mutation identified in 1 RESDX family	?Rolandic epilepsy, mental retardation, and speech dyspraxia, 300643 (3)	Srpx2 (MGI:1916042)
chrX	100671963	100732147	Xq21.33	Xq22.1	300723	SYTL4	Synaptotagmin-like 4	SYTL4	94121	ENSG00000102362			Sytl4 (MGI:1351606)
chrX	100820358	100843533	Xq22.1	Xq22.1	300907	CSTF64	Cleavage stimulation factor, 3-prime pre-RNA, subunit 2, 64kD	CSTF2	1478	ENSG00000101811			Cstf2 (MGI:1343054)
chrX	100843323	100874344	Xq22	Xq22.1	300225	NOX1, MOX1, NOH1	NADPH oxidase 1	NOX1	27035	ENSG00000007952			Nox1 (MGI:2450016)
chrX	100886918	100957400	Xq22.1	Xq22.1	300684	XKRX, XPLAC, XKR2, XRG2	X Kell blood group precursor-related, X-linked	XKRX	402415	ENSG00000182489			Xkrx (MGI:3584011)
chrX	101098158	101181846	Xq22	Xq22.1	300065	FSHPRH1, LRPR1	FSH primary response, rat, homolog of, 1	CENPI	2491	ENSG00000102384			Cenpi (MGI:2147897)
chrX	101219785	101264496	Xq22	Xq22.1	300052	DRP2	Dystrophin-related protein 2	DRP2	1821	ENSG00000102385			Drp2 (MGI:107432)
chrX	101268252	101293070	Chr.X	Xq22.1	300314	TAF7L, TAF2Q	TAF7-like RNA polymerase II, TATA box-binding protein-associated factor, 50kD	TAF7L	54457	ENSG00000102387			Taf7l (MGI:1921719)
chrX	101345655	101348968	Xq22	Xq22.1	300356	TIMM8A, DFN1, DDP, MTS, DDP1	Translocase of inner mitochondrial membrane 8, yeast, homolog of, A	TIMM8A	1678	ENSG00000126953		Mohr-Tranebjaerg syndrome, 304700 (3), X-linked recessive	Timm8a1 (MGI:1353433)
chrX	101349446	101390795	Xq21.3-q22	Xq22.1	300300	BTK, AGMX1, IMD1, XLA, AT	Bruton agammaglobulinemia tyrosine kinase	BTK	695	ENSG00000010671		Agammaglobulinemia and isolated hormone deficiency, 307200 (3), X-linked recessive; Agammaglobulinemia, X-linked 1, 300755 (3), X-linked recessive	Btk (MGI:88216)
chrX	101390889	101396153	Xq22.1	Xq22.1	300902	RPL36A, RPL44	Ribosomal protein L36A	RPL36A	6173	ENSG00000241343			
chrX	101397790	101408012	Xq22	Xq22.1	300644	GLA	Galactosidase, alpha	GLA	2717	ENSG00000102393		Fabry disease, 301500 (3), X-linked; Fabry disease, cardiac variant, 301500 (3), X-linked	Gla (MGI:1347344)
chrX	101408132	101414139	Xq22	Xq22.1	300610	HNRNPH2, NRPH2, MRXSB	Heterogeneous nuclear ribonucleoprotein H2	HNRNPH2	3188	ENSG00000126945	second signal at 6q25.3-q26, pseudogene?	Mental retardation, X-linked, syndromic, Bain type, 300986 (3), X-linked dominant	Hnrnph2 (MGI:1201779)
chrX	101550530	101554699	Xq21.33-q22.2	Xq22.1	300362	ARMCX1, ALEX1	Armadillo repeat containing, X-linked 1	ARMCX1	51309	ENSG00000126947			Armcx1 (MGI:1925498)
chrX	101623129	101631909	Xq21.33-q22.2	Xq22.1	300364	ARMCX3, ALEX3	Armadillo repeat containing, X-linked 3	ARMCX3	51566	ENSG00000102401			Armcx3 (MGI:1918953)
chrX	101655280	101659890	Xq21.33-q22.2	Xq22.1	300363	ARMCX2, ALEX2, KIAA0512	Armadillo repeat containing, X-linked 2	ARMCX2	9823	ENSG00000184867			Armcx2 (MGI:1914666)
chrX	101832111	101857576	Xq22.1	Xq22.1	300319	NXF5	Nuclear RNA export factor 5	NXF5	55998	ENSG00000126952			
chrX	101882287	101932134	Xq22.1	Xq22.1	301007	ZMAT1, KIAA1789	Zinc finger, matrin-type 1	ZMAT1	84460	ENSG00000166432			Zmat1 (MGI:2442284)
chrX	102153706	102156013	Xq22.1	Xq22.1	300693	BEX5, NGFRAP1L1	BEX family member 5	BEX5	340542	ENSG00000184515			
chrX	102247099	102326719	Chr.X	Xq22.1	300315	NXF2	Nuclear RNA export factor 2	NXF2	56001	ENSG00000269405			Nxf2 (MGI:1933192)
chrX	102513681	102516770	Xq22.1	Xq22.1	300939	TMSB15A, TMSB15, TMSNB	Thymosin, beta-15A	TMSB15A	11013	ENSG00000158164			
chrX	102549964	102571692	Xq22.1-q22.3	Xq22.1	300318	NXF4	Nuclear RNA export factor 4	NXF4	55999				
chrX	102651365	102659082	Xq22	Xq22.1	300417	GPRASP1, GASP, KIAA0443	G protein-coupled receptor-associated sorting protein 1	GPRASP1	9737	ENSG00000198932	conflicting assignment to chr.9		Gprasp1 (MGI:1917418)
chrX	102712175	102717732	Xq22.1	Xq22.1	300969	GPRASP2, GASP2	G protein-coupled receptor-associated sorting protein 2	GPRASP2	114928	ENSG00000158301			
chrX	102720713	102752440	Xq22.1	Xq22.1	300921	BHLHB9, P60TRP, KIAA1701	Basic helix-loop-helix domain-containing protein, class B, 9	BHLHB9	80823	ENSG00000198908			Bhlhb9 (MGI:1917487)
chrX	102937271	102938299	Xq22.2	Xq22.1	300405	RAB40AL, RLGP, MRXSMP	Ras-associated protein, RAB40A-like	RAB40AL	282808	ENSG00000102128			
chrX	103062652	103064239	Xq22.1-q22.2	Xq22.1	300690	BEX1	Brain-expressed X-linked gene 1	BEX1	55859	ENSG00000133169			Bex2 (MGI:1338017)
chrX	103075820	103093093	Xq21.3-q22.3	Xq22.1	300316	NXF3	Nuclear RNA export factor 3	NXF3	56000	ENSG00000147206			Nxf3 (MGI:2685230)
chrX	103215091	103217199	Xq22.2	Xq22.1	300692	BEX4	BEX family member 4	BEX4	56271	ENSG00000102409			Bex4 (MGI:3606746)
chrX	103300000	138900000	Xq22.2-q26		300324	MRX53	Mental retardation, X-linked-53	MRX53	4416			Mental retardation, X-linked 53, 300324 (2), X-linked recessive	
chrX	103309345	103311045	Xq22	Xq22.2	300691	BEX2	Brain-expressed X-linked gene 2	BEX2	84707	ENSG00000133134			
chrX	103330185	103332325	Xq22.1-q22.3	Xq22.2	300771	TCEAL7	Transcription elongation factor A-like 7	TCEAL7	56849	ENSG00000182916			Tceal7 (MGI:1915746)
chrX	103376322	103378163	Xq22.1-q23	Xq22.2	300361	NGFRAP1, BEX3, NADE, DXS6984E	Nerve growth factor receptor (TNFRSF16) associated protein 1	BEX3	27018	ENSG00000166681			Bex3 (MGI:1338016)
chrX	103628719	103630952	Xq22.1	Xq22.2	300237	TCEAL1, P21, SIIR	Transcription elongation factor A-like 1	TCEAL1	9338	ENSG00000172465			Tceal1 (MGI:2385317)
chrX	103675497	103688157	Xq22	Xq22.2	300409	MORFL2, MRGX, KIAA0026	Mortality factor 4-like 2	MORF4L2	9643	ENSG00000123562			Morf4l2 (MGI:1927167)
chrX	103776323	103832281	Xq22.1-q22.3	Xq22.2	300285	RAB9B, RAB9L	RAS-associated protein RAB9B	RAB9B	51209	ENSG00000123570			Rab9b (MGI:2442454)
chrX	103776505	103792618	Xq22	Xq22.2	300401	PLP1, PMD, HLD1, SPG2	Proteolipid protein 1	PLP1	5354	ENSG00000123560		Pelizaeus-Merzbacher disease, 312080 (3), X-linked recessive; Spastic paraplegia 2, X-linked, 312920 (3), X-linked recessive	Plp1 (MGI:97623)
chrX	103918895	103974425	Xq22.2	Xq22.2	301011	TMSB15B	Thymosin, beta-15B	TMSB15B	286527	ENSG00000158427	opposite strand relative to TMSB15A		
chrX	104011146	104013686	Xq22.2	Xq22.2	300507	H2BFWT	H2B histone family, member W, testis-specific	H2BFWT	158983	ENSG00000123569			
chrX	104099213	104157026	Xq22.2	Xq22.2	300941	SLC25A53	Solute carrier family 25, member 53	SLC25A53	401612	ENSG00000269743			Slc25a53 (MGI:1914312)
chrX	104250037	104254917	Xq22.1-q22.3	Xq22.2	300154	ESX1L, ESXR1	ESX1-like protein	ESX1	80712	ENSG00000123576			
chrX	104500000	109400000	Xq22.3		300194	AMMEC, DELXq22.3, CXDELq22.3	Alport syndrome, mental retardation, midface hypoplasia, and elliptocytosis (AMME complex)				contiguous gene deletion syndrome	Alport syndrome, mental retardation, midface hypoplasia, and elliptocytosis, 300194 (4)	
chrX	104500000	109400000	Xq22.3		300581	FGS5	FG syndrome 5	FGS5	780900			FG syndrome 5, 300581 (2)	
chrX	104566314	105769728	Xq22	Xq22.3	300277	IL1RAPL2	Interleukin 1 receptor accessory protein-like 2	IL1RAPL2	26280	ENSG00000189108			Il1rapl2 (MGI:1913106)
chrX	105218928	105220692	Chr.X	Xq22.3	300312	TEX13A	Testis-expressed gene 13A	TEX13A	56157	ENSG00000268629			Tex13a (MGI:1915194)
chrX	105821941	105958609	Xq22.3	Xq22.3	300791	NRK, NESK	NIK-related kinase	NRK	203447	ENSG00000123572			Nrk (MGI:1351326)
chrX	106032438	106038726	Xq22.2	Xq22.3	314200	TBG, TBGQTL	Thyroxine-binding globulin	SERPINA7	6906	ENSG00000123561		[Thyroxine-binding globulin QTL], 300932 (3)	Serpina7 (MGI:3041197)
chrX	106693837	106797015	Xq22.3	Xq22.3	300439	RNF128, GRAIL	Ring finger protein 128	RNF128	79589	ENSG00000133135			Rnf128 (MGI:1914139)
chrX	106900062	106903330	Xq22.3	Xq22.3	300575	RIPPLY1	Ripply1, zebrafish, homolog of	RIPPLY1	92129	ENSG00000147223			
chrX	106900163	106930860	Xq22.3-q23	Xq22.3	300520	CLDN2	Claudin 2	CLDN2	9075	ENSG00000165376			Cldn2 (MGI:1276110)
chrX	106940299	107000243	Xq22.3	Xq22.3	300970	MORC4, ZCW4, ZCWCC2	MORC family CW-type zinc finger protein 4	MORC4	79710	ENSG00000133131			Morc4 (MGI:1922996)
chrX	107206628	107244242	Xq22.3	Xq22.3	300933	PIH1D3, CILD36	PIH1 domain-containing protein 3	PIH1D3	139212	ENSG00000080572		Ciliary dyskinesia, primary, 36, X-linked, 300991 (3), X-linked recessive	Pih1h3b,Pih1d3 (MGI:3607720,MGI:1921958)
chrX	107272463	107276558	Xq22-q23	Xq22.3	310310	MYCL2	MYCL-related processed gene	MYCLP1	4611		pseudogene on Xq27.3		
chrX	107522449	107605263	Xq22.3	Xq22.3	301005	FRMPD3, KIAA1817	FERM- and PDZ domain-containing protein 3	FRMPD3	84443	ENSG00000147234			
chrX	107628423	107651025	Xq22-q24	Xq22.3	311850	PRPS1, CMTX5, DFNX1, DFN2	Phosphoribosyl pyrophosphate synthetase-1	PRPS1	5631	ENSG00000147224		Arts syndrome, 301835 (3), X-linked recessive; Charcot-Marie-Tooth disease, X-linked recessive, 5, 311070 (3), X-linked recessive; Deafness, X-linked 1, 304500 (3), X-linked; Gout, PRPS-related, 300661 (3), X-linked recessive; Phosphoribosylpyrophosphate synthetase superactivity, 300661 (3), X-linked recessive	Prps1 (MGI:97775)
chrX	107713220	107777328	Xq22.2	Xq22.3	300506	TSC22D3, DSIPI, GILZ	TSC22 domain family, member 3	TSC22D3	1831	ENSG00000157514			Tsc22d3 (MGI:1196284)
chrX	107820452	107931636	Xq22	Xq22.3	300204	MID2, MRX101	Midline 2	MID2	11043	ENSG00000080561	mutation identified in 1 MRX101 family	?Mental retardation, X-linked 101, 300928 (3), X-linked recessive	Mid2 (MGI:1344333)
chrX	107980863	107982369	Chr.X	Xq22.3	300313	TEX13B	Testis-expressed gene 13B	TEX13B	56156	ENSG00000170925			Tex13b (MGI:1890544)
chrX	108018885	108079183	Xq22.1-q22.3	Xq22.3	300620	VSIG1, GPA34	V-set and immunoglobulin domains-containing protein 1	VSIG1	340547	ENSG00000101842			Vsig1 (MGI:1926039)
chrX	108084204	108091643	Xq22.3	Xq22.3	300880	PSMD10, p28	Proteasome 26S subunit, non-ATPase, 10	PSMD10	5716	ENSG00000101843			Psmd10 (MGI:1858898)
chrX	108091666	108154670	Xq22	Xq22.3	300663	ATG4A, APG4A, AUTL2	Autophagy 4, S. cerevisiae, homolog of, A	ATG4A	115201	ENSG00000101844			Atg4a (MGI:2147903)
chrX	108155606	108439496	Xq22.3	Xq22.3	303631	COL4A6, DELXq22.3, CXDELq22.3, DFNX6	Collagen IV, alpha-6 polypeptide	COL4A6	1288	ENSG00000197565	mutation identified in 1 DFNX6 family	?Deafness, X-linked 6, 300914 (3), X-linked recessive	Col4a6 (MGI:2152695)
chrX	108439843	108697544	Xq22.3	Xq22.3	303630	COL4A5, ATS, ASLN	Collagen IV, alpha-5 polypeptide	COL4A5	1287	ENSG00000188153	diffuse leiomyomatosis with Alport syndrome = contiguous gene syndrome with COL4A6	Alport syndrome, 301050 (3), X-linked dominant	Col4a5 (MGI:88456)
chrX	108719948	108736583	Xq22.3	Xq22.3	300904	IRS4	Insulin receptor substrate 4	IRS4	8471	ENSG00000133124			
chrX	109372060	109482055	Xq22	Xq22-q23	300041	GUCY2F, GUC2F	Guanylate cyclase 2F	GUCY2F	2986	ENSG00000101890			Gucy2f (MGI:105119)
chrX	109400000	138900000	Xq23-q26		300464	CHDS3	Coronary heart disease, susceptibility to, 3		387573			{Coronary heart disease, susceptibility to, 3}, 300464 (2)	
chrX	109400000	117400000	Xq23		300711	IHPS4	Pyloric stenosis, infantile hypertrophic, 4		100188772		max lod at rs3027802	Pyloric stenosis, infantile hypertrophic, 4, 300711 (2)	
chrX	109400000	121800000	Xq23-q24		300046	MRX23	Mental retardation, X-linked-23	MRX23	4387		other MRX in same region MRX27, MRX30, MRX35, MRX47, MRX80	Mental retardation, X-linked 23, 300046 (2), X-linked	
chrX	109400000	143000000	Xq23-q27.2		300613	MYP13	Myopia 13	MYP13	677764		between DXS1210 and DXS1227	Myopia 13, 300613 (2)	
chrX	109535780	109544697	Xq23	Xq23	300320	NXT2	NTF2-related export protein 2	NXT2	55916	ENSG00000101888			Nxt2 (MGI:2147914)
chrX	109623699	109625167	Xq22.3	Xq23	300328	KCNE1L	Potassium voltage-gated channel, Isk-related family, member 1-like	KCNE5	23630	ENSG00000176076			Kcne1l (MGI:1913490)
chrX	109641329	109733402	Xq22.3	Xq23	300157	ACSL4, FACL4, ACS4, MRX63	Acyl-CoA synthetase long-chain family member 4	ACSL4	2182	ENSG00000068366		Mental retardation, X-linked 63, 300387 (3), X-linked dominant	Acsl4 (MGI:1354713)
chrX	110194185	110440232	Xq22.3	Xq23	300195	AMMECR1, MFHIEN	Alport syndrome, mental retardation, midface hypoplasia, and elliptocytosis chromosomal region gene 1	AMMECR1	9949	ENSG00000101935		Midface hypoplasia, hearing impairment, elliptocytosis, and nephrocalcinosis, 300990 (3), X-linked recessive	Ammecr1 (MGI:1860206)
chrX	110358100	110456333	Xq23	Xq23	300965	RGAG1, MAR9, KIAA1318	Retrotransposon GAG domain-containing protein 1	RTL9	57529	ENSG00000243978			Rtl9 (MGI:2685231)
chrX	110673855	110796057	Xq22.1-q23	Xq23	300350	CHRDL1, VOPT, MGC1	Chordin-like 1	CHRDL1	91851	ENSG00000101938		Megalocornea 1, X-linked, 309300 (3), X-linked recessive	Chrdl1 (MGI:1933172)
chrX	110944240	111227360	Xq23	Xq23	300142	PAK3, MRX30, MRX47	p21-activated kinase-3	PAK3	5063	ENSG00000077264		Mental retardation, X-linked 30/47, 300558 (3), X-linked recessive	Pak3 (MGI:1339656)
chrX	111245098	111270545	Xq23	Xq23	300146	CAPN6	Calpain 6	CAPN6	827	ENSG00000077274			Capn6 (MGI:1100850)
chrX	111293778	111412231	Xq22.3-q23	Xq23	300121	DCX, DBCN, LISX	Doublecortin	DCX	1641	ENSG00000077279		Lissencephaly, X-linked, 300067 (3), X-linked; Subcortical laminal heterotopia, X-linked, 300067 (3), X-linked	Dcx (MGI:1277171)
chrX	111680740	111764163	Xq23	Xq23	300776	ALG13, GLT28D1, CDG1S, EIEE36	Alg13, S. cerevisiae, homolog of	ALG13	79868	ENSG00000101901	mutation identified in 1 CDG1S male patient	?Congenital disorder of glycosylation, type Is, 300884 (3), X-linked dominant; Epileptic encephalopathy, early infantile, 36, 300884 (3), X-linked dominant	
chrX	111774313	112082942	Xq23	Xq23	300334	TRPC5, TRP5	Transient receptor potential channel 5	TRPC5	7224	ENSG00000072315			Trpc5 (MGI:109524)
chrX	112630650	112680177	Xq23	Xq23	300566	LHFPL1	LHFP-like protein 1	LHFPL1	340596	ENSG00000182508			Lhfpl1 (MGI:1891214)
chrX	112774876	112840945	Chr.X	Xq23	300410	AMOT, KIAA1071	Angiomotin	AMOT	154796	ENSG00000126016			Amot (MGI:108440)
chrX	113616299	113618152	Xq23	Xq23	300901	XACT	Active X chromosome-coating transcript, noncoding	XACT	105463123				
chrX	114584077	114910060	Xq24	Xq23	312861	HTR2C	5-hydroxytryptamine (serotonin) receptor-2C	HTR2C	3358	ENSG00000147246	formerly HTR1C		Htr2c (MGI:96281)
chrX	114823453	114823563	Xq23	Xq23	300686	MIR448, MIRN448	Micro RNA 448	MIR448	554212				
chrX	115003974	115017643	Xq24	Xq23	300130	IL13RA2	Interleukin-13 receptor, alpha-2	IL13RA2	3598	ENSG00000123496			Il13ra2 (MGI:1277954)
chrX	115289716	115307555	Xq23	Xq23	300616	LUZP4	Leucine zipper protein 4	LUZP4	51213	ENSG00000102021			
chrX	115560849	115650860	Xq23	Xq23	300131	PLS3, BMND18	Plastin 3	PLS3	5358	ENSG00000102024		Bone mineral density QTL18, osteoporosis, 300910 (3), X-linked dominant	Pls3 (MGI:104807)
chrX	115840395	115969110	Xq23	Xq23	301004	DANT2	DXZ4-associated noncoding transcript 2, distal	DANT2	642776				
chrX	115840963	115905526	Xq23	Xq23	301001	DANT1	DXZ4-associated noncoding transcript 1, proximal	DANT1	106029310				
chrX	116170704	116174971	Xq23	Xq23	300034	AGTR2	Angiotensin receptor 2	AGTR2	186	ENSG00000180772			Agtr2 (MGI:87966)
chrX	116436578	116461457	Xq23-q24	Xq23	300444	SLC6A14, OBX, BMIQ11	Solute carrier family 6 (neurotransmitter transporter), member 14	SLC6A14	11254	ENSG00000268104		{Obesity, susceptibility to, BMIQ11}, 300306 (3)	Slc6a14 (MGI:1890216)
chrX	116461685	116463032	Xq22	Xq23	300625	KKLC1, CXorf61	Kita-Kyushu lung cancer antigen 1	CT83	203413	ENSG00000204019			
chrX	117400000	138900000	Xq24-q26		300700	ADFN, ALDS	Albinism-deafness syndrome	ADFN	122		~8cM proximal to F9	Albinism-deafness syndrome, 300700 (2), X-linked	
chrX	117400000	148000000	Xq24-q27		301845	BZX	Bazex syndrome		8255			Bazex syndrome, 301845 (2), X-linked dominant	
chrX	117400000	156040895	Xq24-qter		304730	CND	Corneal dermoids		8231			Dermoids of cornea, 304730 (2), X-linked	
chrX	117400000	121800000	Xq24		300360	MRSS	Mental retardation, X-linked, with short stature					Mental retardation, X-linked, with short stature, 300360 (2)	
chrX	117400000	129500000	Xq24-q25		300518	MRX82	Mental retardation, X-linked 82	MRX82	378484		between DXS6805 and DXS7346	Mental retardation, X-linked 82, 300518 (2), X-linked recessive	
chrX	117400000	121800000	Xq24		300852	MRX88	Mental retardation, X-linked 88		105463129			Mental retardation, X-linked 88, 300852 (2), X-linked	
chrX	117400000	141200000	Xq24-q27.1		300245	PTOS2, PTOSX	Ptosis, hereditary congenital 2		54115			Ptosis, hereditary congenital 2, 300245 (2), X-linked dominant	
chrX	117400000	129500000	Xq24-q25		300378	RRDX	Radial ray deficiency		266719			Radial ray deficiency, 300378 (2)	
chrX	117400000	129500000	Xq24-q25		300750	SPG34	Spastic paraplegia 34, X-linked	SPG34	724110		max lod at DXS8057	Spastic paraplegia 34, X-linked, 300750 (2), X-linked recessive	
chrX	117400000	129500000	Xq24-q25		300591	STQTL6	Stature quantitative trait locus 6		100037264		max lod at DXS8067	{Stature QTL 6}, 300591 (2)	
chrX	117897812	118117339	Xq24	Xq24	300655	KLHL13, KIAA1309	Kelch-like 13	KLHL13	90293	ENSG00000003096			Klhl13 (MGI:1914705)
chrX	118495663	118686159	Xq24	Xq24	300681	DOCK11, ACG, ZIZ2	Dedicator of cytokinesis 11	DOCK11	139818	ENSG00000147251			Dock11 (MGI:1923224)
chrX	118726953	118794532	Chr.X	Xq24	300119	IL13RA1	Interleukin-13 receptor, alpha-1	IL13RA1	3597	ENSG00000131724			Il13ra1 (MGI:105052)
chrX	118823742	118826972	Xq24	Xq24	300701	ZCCHC12, SIZN1	Zinc finger CCHC domain-containing protein 12	ZCCHC12	170261	ENSG00000174460			Zcchc12 (MGI:1919943)
chrX	119078634	119151082	Xq24	Xq24	300995	KIAA1210	Kiaa1210 gene	KIAA1210	57481	ENSG00000250423			
chrX	119236244	119244465	Xq22-q24	Xq24	300435	PGRMC1	Progesterone receptor membrane component 1	PGRMC1	10857	ENSG00000101856			Pgrmc1 (MGI:1858305)
chrX	119399294	119454477	Xq24	Xq24	300641	SLC25A43	Solute carrier family 25, member 43	SLC25A43	203427	ENSG00000077713			Slc25a43 (MGI:2684854)
chrX	119468399	119471395	Xq24-q26	Xq24	300150	SLC25A5, ANT2, T3	Solute carrier family 25 (mitochondrial carrier), member 5 (adenine nucleotide translocator-2, fibroblast)	SLC25A5	292	ENSG00000005022			Slc25a5 (MGI:1353496)
chrX	119574466	119584428	Xq24	Xq24	312180	UBE2A, RAD6A, MRXSN, MRXS30	Ubiquitin-conjugating enzyme E2A (RAD6 homolog)	UBE2A	7319	ENSG00000077721		Mental retardation, X-linked syndromic, Nascimento-type, 300860 (3), X-linked recessive	Ube2a (MGI:102959)
chrX	119588336	119606463	Xq24	Xq24	300440	NKRF, NRF	NFKB-repressing factor	NKRF	55922	ENSG00000186416			Nkrf (MGI:1924536)
chrX	119615723	119693369	Xq24	Xq24	300683	SEPT6, SEP2, KIAA0128	Septin 6	SEPT6	23157	ENSG00000125354			Sept6 (MGI:1888939)
chrX	119786503	119791658	Xq24	Xq24	300899	RPL39	Ribosomal protein L39	RPL39	6170	ENSG00000198918			Rpl39 (MGI:1914498)
chrX	119805310	119853027	Xq25-q26	Xq24	300298	UPF3B, RENT3B, MRXS14	UPF3 regulator of nonsense transcripts, yeast, homolog of, B	UPF3B	65109	ENSG00000125351		Mental retardation, X-linked, syndromic 14, 300676 (3), X-linked recessive	Upf3b (MGI:1915384)
chrX	119870531	119871827	Xq24	Xq24	300951	RNF113A, ZNF183, TTD5	RING finger protein 113A	RNF113A	7737	ENSG00000125352	mutation identified in 1 TTD5 family	?Trichothiodystrophy 5, nonphotosensitive, 300953 (3), X-linked dominant	Rnf113a2 (MGI:1913631)
chrX	119871770	119876665	Xq24	Xq24	300078	NDUFA1, MWFE	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 1, 7.5kD	NDUFA1	4694	ENSG00000125356		Mitochondrial complex I deficiency, 252010 (3), Autosomal recessive, X-linked dominant, Mitochondrial	Ndufa1 (MGI:1929511)
chrX	119895972	119920715	Xq24	Xq24	300462	AKAP14, AKAP28	A-kinase anchor protein 14	AKAP14	158798	ENSG00000186471			Akap14 (MGI:3618288)
chrX	119925049	119943771	Xq24	Xq24	300766	NKAP	NFKB-activating protein	NKAP	79576	ENSG00000101882			Nkap (MGI:1914300)
chrX	120010716	120015550	Xq24	Xq24	300973	RHOXF1P1	RHOX homeobox family member 1, pseudogene 1	RHOXF1P1	101928941				
chrX	120109048	120117650	Xq24	Xq24	300446	RHOXF1, OTEX, PEPP1	RHOX homeobox family, member 1	RHOXF1	158800	ENSG00000101883			
chrX	120158534	120165625	Xq24	Xq24	300447	RHOXF2, PEPP2	RHOX homeobox family, member 2	RHOXF2	84528	ENSG00000131721			
chrX	120250751	120258395	Xq23	Xq24	300329	ZBTB33, KAISO	Zinc finger- and BTB domain-containing protein 33	ZBTB33	10009	ENSG00000177485			Zbtb33 (MGI:1927290)
chrX	120426147	120469348	Xq24	Xq24	309060	LAMP2, LAMPB, LGP110	Lysosome-associated membrane protein-2	LAMP2	3920	ENSG00000005893		Danon disease, 300257 (3), X-linked dominant	Lamp2 (MGI:96748)
chrX	120524588	120575828	Xq23	Xq24	300304	CUL4B, MRXSC, MRXHF2, SFM2, MRXS15	Cullin-4B	CUL4B	8450	ENSG00000158290		Mental retardation, X-linked, syndromic 15 (Cabezas type), 300354 (3), X-linked recessive	Cul4b (MGI:1919834)
chrX	120603888	120621158	Xq22-q24	Xq24	300587	MCTS1, MCT1	Malignant T-cell amplified sequence 1	MCTS1	28985	ENSG00000232119			Mcts1 (MGI:1916245)
chrX	120625673	120630149	Xq23	Xq24	300611	C1GALT1C1, COSMC, C1GALT2, TNPS	C1GALT1-specific chaperone 1	C1GALT1C1	29071	ENSG00000171155		Tn polyagglutination syndrome, somatic, 300622 (3)	C1galt1c1 (MGI:1913493)
chrX	120872551	120875924	Xq24	Xq24	300790	CT47B1, CT47A13	Cancer/testis antigen family 47, member B1	CT47B1	643311	ENSG00000236446			
chrX	120933839	120937259	Xq24	Xq24	300592	CT47A11, LOC255313	Cancer/testis antigen family 47, member A11	CT47A11	255313	ENSG00000226929			
chrX	120938700	120942120	Xq24	Xq24	300789	CT47A10	Cancer/testis antigen family 47, member A10	CT47A10	728036	ENSG00000224089			
chrX	120943560	120946980	Xq24	Xq24	300788	CT47A9	Cancer/testis antigen family 47, member A9	CT47A9	728042	ENSG00000226600			
chrX	120948421	120951841	Xq24	Xq24	300787	CT47A8	Cancer/testis antigen family 47, member A8	CT47A8	728049	ENSG00000230347			
chrX	120953281	120956599	Xq24	Xq24	300786	CT47A7	Cancer/testis antigen family 47, member A7	CT47A7	653282	ENSG00000228517			
chrX	120958164	120961587	Xq24	Xq24	300785	CT47A6	Cancer/testis antigen family 47, member A6	CT47A6	728062	ENSG00000226023			
chrX	120963025	120966445	Xq24	Xq24	300784	CT47A5	Cancer/testis antigen family 47, member A5	CT47A5	728072	ENSG00000237957			
chrX	120967885	120971305	Xq24	Xq24	300783	CT47A4	Cancer/testis antigen family 47, member A4	CT47A4	728075	ENSG00000230594			
chrX	120972745	120976165	Xq24	Xq24	300782	CT47A3	Cancer/testis antigen family 47, member A3	CT47A3	728082	ENSG00000236126			
chrX	120977605	120981025	Xq24	Xq24	300781	CT47A2	Cancer/testis antigen family 47, member A2	CT47A2	728090	ENSG00000242362			
chrX	120982465	120985885	Xq24	Xq24	300780	CT47A1	Cancer/testis antigen family 45, member A1	CT47A1	728096	ENSG00000236371			
chrX	121047607	121049941	Xq25	Xq24	300144	GLUD2	Glutamate dehydrogenase-2	GLUD2	2747	ENSG00000182890		{Parkinson disease, age of onset, modifier}, 168600 (3), Isolated cases, Multifactorial	
chrX	121800000	129500000	Xq25		300979	DUPXq25	Xq25 duplication syndrome					Xq25 duplication syndrome, 300979 (4), X-linked	
chrX	121800000	148000000	Xq25-q27		300660	LKMCD	Leukoencephalopathy with metaphyseal chondrodysplasia		100302058		between DXS8093 and DXS1232	Leukoencephalopathy with metaphyseal chondrodysplasia, 300660 (2), X-linked recessive	
chrX	121800000	141200000	Xq25-q27.1		300703	SCAX5	Spinocerebellar ataxia, X-linked 5		100188768		between DXS1047 and DXS1227	Spinocerebellar ataxia, X-linked 5, 300703 (2), X-linked recessive	
chrX	121800000	138900000	Xq25-q26		300179	SXI2	X inactivation, familial skewed, 2		117237			X inactivation, familial skewed, 2, 300179 (2)	
chrX	121800000	131300000	Xq25-q26.1		313850	THAS, TAS	Thoracoabdominal syndrome	THAS	7055			Thoracoabdominal syndrome, 313850 (2), X-linked	
chrX	121800000	129500000	Xq25		300779	XECD	Corneal dystrophy, endothelial, X-linked		100302510		between DXS8057 and DXS1047	Corneal dystrophy, endothelial, X-linked, 300779 (2), X-linked dominant	
chrX	123184242	123490914	Xq25-q26	Xq25	305915	GRIA3, GLUR3, MRX94	Glutamate receptor, ionotropic, AMPA 3	GRIA3	2892	ENSG00000125675		Mental retardation, X-linked 94, 300699 (3), X-linked recessive	Gria3 (MGI:95810)
chrX	123600560	123733053	Xq25	Xq25	300395	THOC2, THO2, MRX12, MRX35	THO complex 2 (Tho2, yeast, homolog of)	THOC2	57187	ENSG00000125676		Mental retardation, X-linked 12/35, 300957 (3), X-linked recessive	Thoc2 (MGI:2442413)
chrX	123859811	123913978	Xq25	Xq25	300079	XIAP, BIRC4, API3, XLP2	Inhibitor of apoptosis, X-linked	XIAP	331	ENSG00000101966		Lymphoproliferative syndrome, X-linked, 2, 300635 (3), X-linked recessive	Xiap (MGI:107572)
chrX	123960559	124102655	Xq25	Xq25	300826	STAG2, SA2	Stromal antigen 2	STAG2	10735	ENSG00000101972			Stag2 (MGI:1098583)
chrX	124346281	124373159	Xq25	Xq25	300490	SH2D1A, LYP, IMD5, XLP, XLPD1	SH2 domain protein 1A	SH2D1A	4068	ENSG00000183918	1cM from DXS42; no recombination with DXS37	Lymphoproliferative syndrome, X-linked, 1, 308240 (3), X-linked recessive	Sh2d1a (MGI:1328352)
chrX	124375902	125204380	Xq25	Xq25	300588	TENM1, ODZ1, TNM1	Teneurin transmembrane protein 1	TENM1	10178	ENSG00000009694			Tenm1 (MGI:1345185)
chrX	128050961	128052402	Xq25	Xq25	300487	ACTRT1, ARPT1	Actin-related protein T1	ACTRT1	139741	ENSG00000123165			Actrt1 (MGI:1920610)
chrX	129446500	129523563	Xq26.1	Xq25-q26	300012	SMARCA1, SNF2L1	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 1	SMARCA1	6594	ENSG00000102038			Smarca1 (MGI:1935127)
chrX	129500000	148000000	Xq26-q27		300712	CFSS	Craniofacioskeletal syndrome		100188773			?Craniofacioskeletal syndrome, 300712 (2), X-linked recessive, X-linked dominant	
chrX	129500000	138900000	Xq26		302802	CMTX3	Charcot-Marie-Tooth neuropathy, X-linked recessive, 3	CMTX3	1254		between DXS984 and DXS8106	Charcot-Marie-Tooth neuropathy, X-linked recessive, 3, 302802 (2), X-linked recessive	
chrX	129500000	138900000	Xq26		309555	GUST	Gustavson mental retardation syndrome (with microcephaly, optic atrophy, deafness)		8258			Gustavson syndrome, 309555 (2), X-linked	
chrX	129500000	148000000	Xq26-q27		307700	HPT, HPTX, HYPX	Hypoparathyroidism	HPT	3258		?mutations in SOX3	Hypoparathyroidism, X-linked, 307700 (2), X-linked	
chrX	129500000	156040895	Xq26-qter		300076	INDX	Immunoneurologic syndrome X-linked, of Woods, Black, and Norbury		8259			Woods-Black-Norbury syndrome, 300076 (2), X-linked dominant	
chrX	129500000	138900000	Xq26		300372	MRX42	Mental retardation, X-linked nonspecific, 42	MRX42	4406		?pericentromeric region	Mental retardation, X-linked 42, 300372 (2)	
chrX	129500000	148000000	Xq26-q27		300155	RP24	Retinitis pigmentosa-24	RP24	6116			Retinitis pigmentosa 24, 300155 (2)	
chrX	129500000	138900000	Xq26		313350	SHFM2, SHFD2	Split hand/foot malformation, type (ectrodactyly) 2	SHFM2	6463			Split hand/foot malformation 2, 313350 (2), X-linked	
chrX	129532735	129592560	Xq26.1	Xq26.1	300535	OCRL, LOCR, OCRL1, NPHL2	Phosphatidylinositol polyphosphate 5-phosphatase (OCRL gene)	OCRL	4952	ENSG00000122126		Dent disease 2, 300555 (3), X-linked recessive; Lowe syndrome, 309000 (3), X-linked recessive	Ocrl (MGI:109589)
chrX	129645258	129654955	Xq25-q26.3	Xq26.1	300297	APLN	Apelin	APLN	8862	ENSG00000171388			Apln (MGI:1353624)
chrX	129738969	129769548	Xq25	Xq26.1	300145	XPNPEP2, AEACEI	X-prolyl aminopeptidase 2 (aminopeptidase P)	XPNPEP2	7512	ENSG00000122121		{Angioedema induced by ACE inhibitors, susceptibility to}, 300909 (3)	Xpnpep2 (MGI:2180001)
chrX	129779915	129795200	Xq26.1	Xq26.1	300441	SASH3, HACS2, CXorf9, SLY	SAM and SH3 domain containing 3	SASH3	54440	ENSG00000122122			Sash3 (MGI:1921381)
chrX	129803287	129843933	Xq26.1	Xq26.1	300646	ZDHHC9, DHHC9, MRXSZ	Zinc finger DHHC domain-containing protein 9	ZDHHC9	51114	ENSG00000188706		Mental retardation, X-linked syndromic, Raymond type, 300799 (3)	Zdhhc9 (MGI:2444393)
chrX	129906120	129929761	Xq26.1	Xq26.1	300508	UTP14A	Utp14, S. cerevisiae, homolog of, A	UTP14A	10813	ENSG00000156697			Utp14a (MGI:1919804)
chrX	129980284	130058082	Xq25-q26.1	Xq26.1	300688	BCORL1	BCL6 corepressor-like 1	BCORL1	63035	ENSG00000085185			Bcorl1 (MGI:2443910)
chrX	130064919	130110712	Xq26	Xq26.1	300775	ELF4, MEF	E74-like factor 4	ELF4	2000	ENSG00000102034			Elf4 (MGI:1928377)
chrX	130129361	130165886	Xq26.1	Xq26.1	300169	AIFM1, PDCD8, AIF, COXPD6, COWCK, CMTX4, DFNX5	Apoptosis-inducing factor, mitochondrion-associated, 1	AIFM1	9131	ENSG00000156709		Combined oxidative phosphorylation deficiency 6, 300816 (3), X-linked recessive; Cowchock syndrome, 310490 (3), X-linked recessive; Deafness, X-linked 5, 300614 (3), X-linked recessive	
chrX	130110632	130184872	Chr.X	Xq26.1	300333	RAB33A	Ras-associated protein RAB33A	RAB33A	9363	ENSG00000134594			Rab33a (MGI:109493)
chrX	130339887	130373360	Xq24	Xq26.1	300242	SLC25A14, BMCP1	Solute carrier family 25 (mitochondrial carrier), member 14	SLC25A14	9016	ENSG00000102078			Slc25a14 (MGI:1330823)
chrX	130384344	130385536	Xq26.1	Xq26.1	300513	GPR119, GPCR2	G protein-coupled receptor 119	GPR119	139760	ENSG00000147262			Gpr119 (MGI:2668412)
chrX	130622329	130903316	Xq25-q26.2	Xq26.1	300282	ENOX2	ECTO-NOX disulfide-thiol exchanger 2	ENOX2	10495	ENSG00000165675			Enox2 (MGI:2384799)
chrX	131058241	131089884	Xq26.1	Xq26.1	300937	ARHGAP36	Rho GTPase-activating protein 36	ARHGAP36	158763	ENSG00000147256			Arhgap36 (MGI:1922654)
chrX	131273505	131289456	Xq25	Xq26.1	300137	IGSF1, IGDC1, CHTE	Immunoglobulin superfamily, member 1	IGSF1	3547	ENSG00000147255		Hypothyroidism, central, and testicular enlargement, 300888 (3), X-linked recessive	Igsf1 (MGI:2147913)
chrX	131691524	131830642	Xq26.1	Xq26.2	300999	FIRRE, LINC01200	Functional intergenic repeating RNA element	FIRRE	286467				
chrX	132023216	132075942	Xq26	Xq26.2	300547	MASK, MST4	MST3- and SOK1-related kinase	STK26	51765	ENSG00000134602			Stk26 (MGI:1917665)
chrX	132074925	132128021	Xq26.2	Xq26.2	300628	FRMD7, NYS1, XIPAN	FERM domain-containing 7	FRMD7	90167	ENSG00000165694		Nystagmus 1, congenital, X-linked, 310700 (3), X-linked; Nystagmus, infantile periodic alternating, X-linked, 310700 (3), X-linked	Frmd7 (MGI:2686379)
chrX	132369313	132490029	Xq26	Xq26.2	300413	MBNL3, MBXL	Muscleblind-like protein 3	MBNL3	55796	ENSG00000076770			Mbnl3 (MGI:2444912)
chrX	132626009	132961394	Xq26.2	Xq26.2	300545	HS6ST2	Heparan sulfate 6-O-sulfotransferase 2	HS6ST2	90161	ENSG00000171004			Hs6st2 (MGI:1354959)
chrX	133024630	133083767	Xq26.2	Xq26.2	300309	USP26	Ubiquitin-specific protease 26	USP26	83844	ENSG00000134588			Usp26 (MGI:1933247)
chrX	133216668	133218347	Xq26.2	Xq26.2	300772	TFDP3, HCA661, CT30, DP4	Transcription factor DP family, member 3	TFDP3	51270	ENSG00000183434			
chrX	133301035	133415176	Xq26	Xq26.2	300168	GPC4	Glypican 4	GPC4	2239	ENSG00000076716	centromeric to GPC3		Gpc4 (MGI:104902)
chrX	133535744	133985645	Xq26	Xq26.2	300037	GPC3, SDYS, SGBS1	Glypican 3	GPC3	2719	ENSG00000147257		Simpson-Golabi-Behmel syndrome, type 1, 312870 (3), X-linked recessive; Wilms tumor, somatic, 194070 (3)	Gpc3 (MGI:104903)
chrX	134169670	134169765	Xq26.2	Xq26.2	300722	MIR19B2, MIRN19B2	Micro RNA 19B2	MIR19B2	406981				
chrX	134169808	134169876	Xq26.2	Xq26.2	300950	MIR20B	Micro RNA 20B	MIR20B	574032				
chrX	134170197	134170277	Xq26.2	Xq26.2	300792	MIR106A, MIRN106A	Micro RNA 106A	MIR106A	406899				
chrX	134373311	134428791	Xq26.3	Xq26.2	300414	PHF6, BFLS	PHD finger protein 6	PHF6	84295	ENSG00000156531		Borjeson-Forssman-Lehmann syndrome, 301900 (3), X-linked recessive	Phf6 (MGI:1918248)
chrX	134460144	134500667	Xq26.2	Xq26.2-q26.3	308000	HPRT1, HPRT	Hypoxanthine phosphoribosyltransferase 1	HPRT1	3251	ENSG00000165704		HPRT-related gout, 300323 (3), X-linked recessive; Lesch-Nyhan syndrome, 300322 (3), X-linked recessive	Hprt (MGI:96217)
chrX	134500000	138900000	Xq26.3		300795	CT45A4, CT45.4	Cancer/testis antigen family 45, member A4						
chrX	134500000	138900000	Xq26.3		300942	CXDUPq26.3, DUPXq26.3, XLAG	Chromosome Xq26.3 duplication syndrome					Chromosome Xq26.3 duplication syndrome, 300942 (4), X-linked dominant	
chrX	134500000	138900000	Xq26.3		300833	SRXX3	46XX sex reversal 3				due to deletion/duplication/rearrangement upstream of SOX3	46XX sex reversal 3, 300833 (4), X-linked dominant	
chrX	134546327	134546397	Xq26.3	Xq26.3	300865	MIR503	Micro RNA 503	MIR503	574506				
chrX	134546613	134546710	Xq26.3	Xq26.3	300682	MIR424, MIRN424, MIR322	Micro RNA 424	MIR424	494336				
chrX	134565837	134764321	Xq26	Xq26.3	300296	PLAC1	Placenta-specific gene 1	PLAC1	10761	ENSG00000170965			Plac1 (MGI:1926287)
chrX	134887625	134915343	Xq26.3	Xq26.3	300674	MOSPD1	Motile sperm domain-containing protein 1	MOSPD1	56180	ENSG00000101928			Mospd1 (MGI:1917630)
chrX	135032302	135033545	Xq26	Xq26.3	300213	CXX1	CAAX box protein 1	RTL8C	8933	ENSG00000134590			Rtl8c (MGI:1920115)
chrX	135248588	135344628	Xq26	Xq26.3	314997	ZNF75D, ZNF75	Zinc finger protein-75D	ZNF75D	7626	ENSG00000186376	1Mb distal to HPRT		
chrX	135344769	135363412	Xq26.3	Xq26.3	300627	ZNF449, ZSCAN19	Zinc finger protein 449	ZNF449	203523	ENSG00000173275			Zfp449 (MGI:1925869)
chrX	135708397	135723317	Xq26.3	Xq26.3	300648	CT45A1, CT45	Cancer/testis antigen family 45, member A1	CT45A1	541466	ENSG00000268940			
chrX	135760066	135768223	Xq26.3	Xq26.3	300794	CT45A3, CT45.3	Cancer/testis antigen family 45, member A3	CT45A3	441519	ENSG00000269096			
chrX	135777129	135785513	Xq26.3	Xq26.3	300796	CT45A5, CT45.5	Cancer/testis antigen family 45, member A5	CT45A5	441521	ENSG00000228836			
chrX	135794686	135802760	Xq26.3	Xq26.3	300797	CT45A6, CT45.6	Cancer/testis antigen family 45, member A6	CT45A6	541465	ENSG00000278289			
chrX	135811978	135820061	Xq26.3	Xq26.3	300793	CT45A2, CT45.2	Cancer/testis antigen family 45, member A2	CT45A2	728911	ENSG00000271449			
chrX	135893606	135913060	Xq28	Xq26.3	300359	SAGE	Sarcoma antigen	SAGE1	55511	ENSG00000181433			
chrX	135974595	136047268	Xq26.3	Xq26.3	300231	SLC9A6, NHE6	Solute carrier family 9 (sodium/hydrogen exchanger), member 6	SLC9A6	10479	ENSG00000198689		Mental retardation, X-linked syndromic, Christianson type, 300243 (3), X-linked dominant	Slc9a6 (MGI:2443511)
chrX	136146701	136211358	Xq27.2	Xq26.3	300163	FHL1, SLIM1, XMPMA, KYOT, FHL1A, FHL1B, RBMX1A, RBMX1B, FCMSU	Four-and-a-half LIM domains 1	FHL1	2273	ENSG00000022267	mutation identified in 1 FCMSU family	Emery-Dreifuss muscular dystrophy 6, X-linked, 300696 (3), X-linked recessive; Myopathy, X-linked, with postural muscle atrophy, 300696 (3), X-linked recessive; Reducing body myopathy, X-linked 1a, severe, infantile or early childhood onset, 300717 (3), X-linked dominant; Reducing body myopathy, X-linked 1b, with late childhood or adult onset, 300718 (3), X-linked; Scapuloperoneal myopathy, X-linked dominant, 300695 (3), X-linked dominant; ?Uruguay faciocardiomusculoskeletal syndrome, 300280 (3), X-linked recessive	Fhl1 (MGI:1298387)
chrX	136213219	136256481	Xq26.3	Xq26.3	300930	MAP7D3, MDP3	MAP7 domain-containing protein 3	MAP7D3	79649	ENSG00000129680			Map7d3 (MGI:2445051)
chrX	136487965	136492438	Xq26-q28	Xq26.3	300107	BRS3	Bombesin-like receptor 3	BRS3	680	ENSG00000102239			Brs3 (MGI:1100501)
chrX	136497078	136512345	Xq26.3	Xq26.3	300346	HTATSF1, TATSF1	HIV-1 TAT stimulatory factor 1	HTATSF1	27336	ENSG00000102241			Htatsf1 (MGI:1919709)
chrX	136532151	136556806	Xq26.1-q27.2	Xq26.3	300583	VGLL1, VGL1, TDU	Vestigial-like 1	VGLL1	51442	ENSG00000102243			Vgll1 (MGI:2655768)
chrX	136648176	136660389	Xq26	Xq26.3	300386	TNFSF5, CD40LG, HIGM1, IGM	Tumor necrosis factor ligand superfamily, member 5	CD40LG	959	ENSG00000102245	Between DSX144E and DSX300	Immunodeficiency, X-linked, with hyper-IgM, 308230 (3), X-linked recessive	Cd40lg (MGI:88337)
chrX	136665546	136781343	Xq26	Xq26.3	300267	ARHGEF6, MRX46, COOL2	Rho guanine nucleotide exchange factor-6	ARHGEF6	9459	ENSG00000129675		Mental retardation, X-linked 46, 300436 (3), X-linked recessive	Arhgef6 (MGI:1920591)
chrX	136869193	136880779	Xq26	Xq26.3	300199	RBMX, MRXS11	RNA-binding motif protein, X chromosome	RBMX	27316	ENSG00000147274	mutation identified in 1 MRXS11 family	?Mental retardation, X-linked, syndromic 11, Shashi type, 300238 (3), X-linked recessive	Rbmx (MGI:1343044)
chrX	137030147	137031673	Xq26.3	Xq26.3	300393	GPR101, PAGH2, PITA2	G protein-coupled receptor 101	GPR101	83550	ENSG00000165370		Pituitary adenoma 2, GH-secreting, 300943 (3)	Gpr101 (MGI:2685211)
chrX	137566126	137577690	Xq26.2	Xq26.3	300265	ZIC3, HTX1, HTX, VACTERLX	Zic family, member 3	ZIC3	7547	ENSG00000156925		Congenital heart defects, nonsyndromic, 1, X-linked, 306955 (3), X-linked recessive; Heterotaxy, visceral, 1, X-linked, 306955 (3), X-linked recessive; VACTERL association, X-linked, 314390 (3), X-linked recessive	Zic3 (MGI:106676)
chrX	138631572	139222888	Xq26.3	Xq26.3-q27.1	300070	FGF13, FGF2	Fibroblast growth factor-13	FGF13	2258	ENSG00000129682			Fgf13 (MGI:109178)
chrX	138900000	148000000	Xq27		300536	BMND4	Bone mineral density QTL 4		554316			[Bone mineral density QTL 4], 300536 (2)	
chrX	138900000	141200000	Xq27.1		300898	CIRS7, CDR1AS	Circular RNA sponge for MIR7						
chrX	138900000	148000000	Xq27		300085	COD2	Cone dystrophy-2, X-linked	COD2	1275			Cone dystrophy, progressive X-linked, 2, 300085 (2), X-linked	
chrX	138900000	156040895	Xq27-q28		300147	HPCX1	Prostate cancer, hereditary, X-linked 1	HPCX	9566		between D3S2390 and bG82i1.0	{Prostate cancer, hereditary, X-linked 1}, 300147 (2)	
chrX	138900000	141200000	Xq27.1		307150	HTC2, HCG, CGH, CXINSq27.1	Hypertrichosis, congenital generalized				palindrome-mediated interchromosomal insertion at Xq27.1	Hypertrichosis, congenital generalized, 307150 (4), X-linked dominant	
chrX	138900000	156040895	Xq27-q28		301590	MCOPS4, ANOP1	Microphthalmia, syndromic 4	ANOP1	289			?Microphthalmia, syndromic 4, 301590 (2), X-linked recessive	
chrX	138900000	148000000	Xq27		300228	TGCT1	Testicular germ cell tumor 1	TGCT1	50830			Testicular germ cell tumor, 300228 (2)	
chrX	139530719	139563458	Xq27.1-q27.2	Xq27.1	300746	F9, HEMB, THPH8	Coagulation factor IX (plasma thromboplastic component)	F9	2158	ENSG00000101981	distal to HPRT; proximal part of Xq27	{Deep venous thrombosis, protection against}, 300807 (3); Hemophilia B, 306900 (3), X-linked recessive; Thrombophilia, X-linked, due to factor IX defect, 300807 (3); {Warfarin sensitivity}, 122700 (3), Autosomal dominant	F9 (MGI:88384)
chrX	139581767	139708278	Xq27	Xq27.1	311030	MCF2, DBL	Oncogene MCF2 (oncogene DBL)	MCF2	4168	ENSG00000101977	~60kb telomeric to F9; 5' replacement by chr.15 segment		Mcf2 (MGI:96932)
chrX	139726345	139933082	Xq27	Xq27.1	300516	ATP11C, ATPIQ, ATPIG	ATPase, class VI, type 11C	ATP11C	286410	ENSG00000101974			Atp11c (MGI:1859661)
chrX	140502986	140505059	Xq26.3	Xq27.1	313430	SOX3, MRGH	SRY (sex determining region Y)-box 3	SOX3	6658	ENSG00000134595	P mutant in BFLS	Mental retardation, X-linked, with isolated growth hormone deficiency, 300123 (3); Panhypopituitarism, X-linked, 312000 (3), X-linked	Sox3 (MGI:98365)
chrX	140783259	140784557	Xq27.1-q27.2	Xq27.1	302650	CDR1, CDR62A	Cerebellar degeneration-related protein-1, 34kD	CDR1	1038	ENSG00000184258	between HPRT and F9		
chrX	141002590	141003705	Xq27.1-q27.3	Xq27.1	300669	SPANXB1, SPANXB	SPANX family, member B1	SPANXB1	728695	ENSG00000227234			
chrX	141175744	141177213	Xq27	Xq27.1	300402	LDOC1	Leucine zipper downregulated in cancer 1	LDOC1	23641	ENSG00000182195			Ldoc1 (MGI:2685212)
chrX	141200000	156040895	Xq27.2-q28		300388	BPP, PMGX, CBPS	Polymicrogyria, bilateral perisylvian				possible genetic heterogeneity	Polymicrogyria, bilateral perisylvian, 300388 (2), X-linked dominant	
chrX	141241462	141242549	Xq26.3-q27.1	Xq27.2	300330	SPANXC, CTP11	Sperm protein associated with the nucleus, X chromosome, family member C	SPANXC	64663	ENSG00000198573			
chrX	141583673	141584737	Xq27.1	Xq27.2	300305	SPANXA1, SPANX	Sperm protein associated with the nucleus, X chromosome, family member A1	SPANXA1	30014	ENSG00000198021			
chrX	141589707	141590771	Xq27.2	Xq27.2	300493	SPANXA2	Sperm protein associated with the nucleus, X chromosome, family member A2	SPANXA2	728712	ENSG00000203926			
chrX	141697400	141698738	Xq27.1	Xq27.2	300670	SPANXD	SPANX family, member D	SPANXD	64648	ENSG00000196406			
chrX	141697400	141698738	Xq27.1	Xq27.2	300671	SPANXE	SPANX family, member E	SPANXD	64648	ENSG00000196406			
chrX	141838315	141898141	Xq27	Xq27.2	300469	MAGEC3	Melanoma antigen, family C, 3	MAGEC3	139081	ENSG00000165509			
chrX	141903855	141909400	Xq26	Xq27.2	300223	MAGEC1	Melanoma antigen, family C, 1	MAGEC1	9947	ENSG00000155495			
chrX	142202341	142205289	Xq27	Xq27.2	300468	MAGEC2, MAGEE1, CT10, HCA587	Melanoma antigen, family C, 2	MAGEC2	51438	ENSG00000046774			
chrX	143000000	156040895	Xq27.3-q28		300869	DUPXq27.3q28, CXDUPq27.3q28	Chromosome Xq27.3-q28 duplication syndrome					Chromosome Xq27.3-q28 duplication syndrome, 300869 (4), X-linked recessive	
chrX	143000000	148000000	Xq27.3		300509	DYX9	Dyslexia, susceptibility to, 9	DYX9	474159		max lod at DXS8043	{Dyslexia, susceptibility to, 9}, 300509 (2)	
chrX	143000000	156040895	Xq27.3-qter		302000	EBM	Epidermolysis bullosa, macular type	EBM	1881				
chrX	143025917	143038636	Xq27	Xq27.3	300667	SPANXN4	SPANX family, member N4	SPANXN4	441525	ENSG00000189326			
chrX	143508734	143517474	Xq27	Xq27.3	300666	SPANXN3	SPANX family, member N3	SPANXN3	139067	ENSG00000189252			
chrX	143622789	143636106	Xq27	Xq27.3	300562	SLITRK4	SLIT- and NTRK-like family, member 4	SLITRK4	139065	ENSG00000179542			Slitrk4 (MGI:2442509)
chrX	143712034	143720667	Xq27	Xq27.3	300665	SPANXN2	SPANX family, member N2	SPANXN2	494119	ENSG00000268988			
chrX	145247586	145256207	Xq27	Xq27.3	300664	SPANXN1	SPANX family, member N1	SPANXN1	494118	ENSG00000203923			
chrX	145817828	145829855	Xq27	Xq27.3	300561	SLITRK2, KIAA1854, CXorf1, CXorf2	SLIT- and NTRK-like family, member 2	SLITRK2	84631	ENSG00000185985			Slitrk2 (MGI:2679449)
chrX	147230719	147230842	Xq27.3	Xq27.3	300877	MIR506	Micro RNA 506	MIR506	574511				
chrX	147236912	147237026	Xq27.3	Xq27.3	300874	MIR508	Micro RNA 508	MIR508	574513				
chrX	147259651	147259725	Xq27.3	Xq27.3	300876	MIR509-3	Micro RNA 509-3	MIR509-3	100126337				
chrX	147260531	147260624	Xq27.3	Xq27.3	300875	MIR509-1	Micro RNA 509-2	MIR509-1	574514				
chrX	147272334	147272407	Xq27.3	Xq27.3	300866	MIR510	Micro RNA 510	MIR510	574515				
chrX	147909430	147911816	Xq27	Xq27.3	300805	FMR1AS1, ASFMR1	FMR1 antisense RNA 1	FMR1-AS1	100126270				
chrX	147911950	147951126	Xq27.3	Xq27.3	309550	FMR1, FRAXA, POF1	FMR1 gene	FMR1	2332	ENSG00000102081	8-8.7Mb from telomere	Fragile X syndrome, 300624 (3), X-linked dominant; Fragile X tremor/ataxia syndrome, 300623 (3), X-linked dominant; Premature ovarian failure 1, 311360 (3), X-linked	Fmr1 (MGI:95564)
chrX	148000000	156040895	Xq28		300843	BED	Bornholm eye disease		100653365		linked to F8	Bornholm eye disease, 300843 (2), X-linked recessive	
chrX	148000000	156040895	Xq28		300815	DUPXq28, CXq28	Chromosome Xq28 duplication syndrome					Chromosome Xq28 duplication syndrome, 300815 (4)	
chrX	148000000	156040895	Xq28		305424	DXS522E, F8B	DNA segment, single copy, expressed probes, intron 22 probe, F8B						
chrX	148000000	156040895	Xq28		306995	HMS1, GAY1	Homosexuality, male					[?Homosexuality, male], 306995 (2), X-linked	
chrX	148000000	156040895	Xq28		309200	MAFD2, MDX	Major affective disorder 2	MAFD2	4096		linkage to G6PD,CB in non-Ashkenazi Jews	{?Major affective disorder 2}, 309200 (2), X-linked dominant	
chrX	148000000	156040895	Xq28		309620	MRSD, CHRS	Mental retardation-skeletal dysplasia	MRSD	4364			Mental retardation-skeletal dysplasia, 309620 (2), X-linked	
chrX	148000000	156040895	Xq28		300261	MRXSA	Armfield X-linked mental retardation syndrome		57791			Mental retardation syndrome, X-linked, Armfield type, 300261 (2), X-linked recessive	
chrX	148000000	156040895	Xq28		300845	MYMY4, CXDELq38	Moyamoya disease 4 with short stature, hypergonadotropic hypogonadism and facial dysmorphism				contiguous gene deletion syndrome (3.4kb)	Moyamoya disease 4, 300845 (4), X-linked recessive	
chrX	148000000	156040895	Xq28		310460	MYP1	Myopia 1, X-linked	MYP1	4657			Myopia-1, 310460 (2), X-linked recessive	
chrX	148000000	156040895	Xq28		300605	RP34	Retinitis pigmentosa 34	RP34	777642			Retinitis pigmentosa 34, 300605 (2)	
chrX	148000000	156040895	Xq28		300809	SLEB15	Systemic lupus erythematosus, susceptibility to, 15		100379200		associated with rs17435	{Systemic lupus erythematosus, susceptibility to, 15}, 300809 (2)	
chrX	148000000	156040895	Xq28		314300	TKCR, TKC	Torticollis, keloids, cryptorchidism and renal dysplasia	TKCR	7085		distal to G6PD	Goeminne TKCR syndrome, 314300 (2), X-linked	
chrX	148000000	156040895	Xq28		314900	XM	Xm	XM	7506		linked to DCB, PCB		
chrX	148500618	149000662	Xq28	Xq28	300806	AFF2, FMR2, FRAXE, MRX2	AF4/FMR2 family, member 2 (fragile site, X-linked, E)	AFF2	2334	ENSG00000155966		Mental retardation, X-linked, FRAXE type, 309548 (3), X-linked recessive	
chrX	149476989	149505353	Xq28	Xq28	300823	IDS, MPS2, SIDS	Iduronate 2-sulfatase (Hunter syndrome)	IDS	3423	ENSG00000010404	telomeric IDS2 source of inversion in IDS	Mucopolysaccharidosis II, 309900 (3), X-linked recessive	Ids (MGI:96417)
chrX	149540629	149555344	Xq27	Xq28	300954	CXorf40A, EOLA1	Chromosome X open reading frame 40A	CXorf40A	91966	ENSG00000197620			1110012L19Rik (MGI:1915868)
chrX	149581652	149587467	Xq28	Xq28	300764	MAGEA9B	Melanoma antigen, family A, 9B	MAGEA9B	728269	ENSG00000267978			
chrX	149596555	149631911	Xq28	Xq28	300031	FAM11A, FRAXF	Family with sequence similarity 11, member A	TMEM185A	84548	ENSG00000269556			Tmem185a (MGI:2448555)
chrX	149688201	149717267	Xq28	Xq28	300344	MAGEA11, MAGE11	Melanoma antigen, family A, 11	MAGEA11	4110	ENSG00000185247			Magea4 (MGI:1333839)
chrX	149781875	149787736	Xq28	Xq28	300342	MAGEA9, MAGE9	Melanoma antigen, family A, 9	MAGEA9	4108	ENSG00000123584			
chrX	149825707	149879798	Xq28	Xq28	300892	LINC00850, KUCG1	Long intergenic noncoding RNA 850	LINC00850	101241891				
chrX	149881140	149885834	Xq28	Xq28	300341	MAGEA8, MAGE8	Melanoma antigen, family A, 8	MAGEA8	4107	ENSG00000156009			
chrX	150361563	150514177	Xq28	Xq28	300120	MAMLD1, CXorf6, F18, HYSP2	Mastermind-like domain containing 1	MAMLD1	10046	ENSG00000013619	near MTM1 in microdeletion	Hypospadias 2, X-linked, 300758 (3), X-linked recessive	
chrX	150562657	150673142	Xq28	Xq28	300415	MTM1, MTMX	Myotubularin	MTM1	4534	ENSG00000171100	close to F8	Myotubular myopathy, X-linked, 310400 (3), X-linked recessive	Mtm1 (MGI:1099452)
chrX	150692961	150765102	Xq28	Xq28	300171	MTMR1	Myotubularin-related protein-1	MTMR1	8776	ENSG00000063601			Mtmr1 (MGI:1858271)
chrX	150766335	150898815	Xq28	Xq28	300846	CD99L2, CD99B	CD99 antigen-like 2	CD99L2	83692	ENSG00000102181			Cd99l2 (MGI:2177151)
chrX	150980507	150990774	Xq28	Xq28	300193	HMGB3, HMG4, HMG2A, MCOPS13	High-mobility group box 3 (high mobility group protein 4)	HMGB3	3149	ENSG00000029993	mutation identified in 1 MCOPS13 family	?Microphthalmia, syndromic 13, 300915 (3), X-linked	
chrX	151176583	151182854	Xq28	Xq28	300207	GPR50	G protein-coupled receptor 50	GPR50	9248	ENSG00000102195			Gpr50 (MGI:1333877)
chrX	151396554	151409363	Xq28	Xq28	300913	VMA21, XMEA	Vma21, S. cerevisiae, homolog of	VMA21	203547	ENSG00000160131		Myopathy, X-linked, with excessive autophagy, 310440 (3), X-linked recessive	
chrX	151563183	151676738	Xq28	Xq28	300993	PASD1, CT64, OXTES1	PAS domain-containing repressor 1	PASD1	139135	ENSG00000166049			
chrX	151694605	151701590	Xq28	Xq28	300685	PRRG3, PRGP3, TMG3	Proline-rich gamma-carboxyglutamic acid protein 3	PRRG3	79057	ENSG00000130032			Prrg3 (MGI:2685214)
chrX	151716035	151723193	Xq28	Xq28	300450	FATE1	Fetal and adult testis-expressed gene 1	FATE1	89885	ENSG00000147378			
chrX	151734745	151745563	Xq27	Xq28	300338	CNGA2, CNG2, OCNC1	Cyclic nucleotide-gated channel, alpha-2	CNGA2	1260	ENSG00000183862			Cnga2 (MGI:108040)
chrX	151912888	151925169	Xq28	Xq28	300175	MAGEA4, MAGE4A, MAGE4B	Melanoma antigen, family A, 4	MAGEA4	4103	ENSG00000147381			
chrX	151953123	151974691	Xq28	Xq28	300093	GABRE	Gamma-aminobutyric acid (GABA) A receptor, epsilon	GABRE	2564	ENSG00000102287			
chrX	151958577	151958657	Xq28	Xq28	300769	MIR224, MIRN224	Micro RNA 224	MIR224	407009				
chrX	152114048	152117938	Xq28	Xq28	300340	MAGEA5, MAGE5	Melanoma antigen, family A, 5	MAGEA5	4104				
chrX	152133309	152138577	Xq28	Xq28	300343	MAGEA10, MAGE10	Melanoma antigen, family A, 10	MAGEA10	4109	ENSG00000124260			Magea10 (MGI:3588211)
chrX	152166233	152451358	Xq28	Xq28	305660	GABRA3	Gamma-aminobutyric acid (GABA) A receptor, alpha-3	GABRA3	2556	ENSG00000011677	4Mb from telomere		Gabra3 (MGI:95615)
chrX	152392218	152392298	Xq28	Xq28	300811	MIR105-1, MIRN105-1	Micro RNA 105-1	MIR105-1	406897				
chrX	152394411	152394491	Xq28	Xq28	300812	MIR105-2, MIRN105-2	Micro RNA 105-2	MIR105-2	406898				
chrX	152637894	152659827	Xq28	Xq28	300349	GABRQ	Gamma-aminobutyric acid receptor, theta	GABRQ	55879	ENSG00000268089			Gabrq (MGI:1888498)
chrX	152698741	152702346	Xq28	Xq28	300174	MAGEA3, MAGE3	Melanoma antigen, family A, 3	MAGEA3	4102	ENSG00000221867			
chrX	152714527	152718606	Xq28	Xq28	300549	MAGEA2B	Melanoma antigen, family A, 2B	MAGEA2B	266740	ENSG00000183305			
chrX	152727483	152733735	Xq28	Xq28	300944	CSAG1, CSAGE	CSAG family, member 1 `	CSAG1	158511	ENSG00000198930			
chrX	152733778	152737668	Xq28	Xq28	300177	MAGEA12, MAGE12	Melanoma antigen, family A, 12	MAGEA12	4111	ENSG00000213401			
chrX	152749862	152753941	Xq28	Xq28	300173	MAGEA2, MAGE2	Melanoma antigen, family A, 2	MAGEA2	4101	ENSG00000268606			
chrX	152766135	152769728	Xq28	Xq28	300176	MAGEA6, MAGE6	Melanoma antigen, family A, 6	MAGEA6	4105	ENSG00000197172			
chrX	152827326	152830756	Xq28	Xq28	300006	CETN2, CALT	Centrin, EF-hand protein, 2 (caltractin)	CETN2	1069	ENSG00000147400			Cetn2 (MGI:1347085)
chrX	152830966	152869362	Xq28	Xq28	300275	NSDHL	NAD(P)H steroid dehydrogenase-like protein	NSDHL	50814	ENSG00000147383		CHILD syndrome, 308050 (3), X-linked dominant; CK syndrome, 300831 (3), X-linked recessive	Nsdhl (MGI:1099438)
chrX	152898131	152973480	Xq28	Xq28	300381	ZNF185	Zinc finger protein 185	ZNF185	7739	ENSG00000147394			
chrX	152988823	152994457	Xq28	Xq28	300916	PNMA5, KIAA1934	Paraneoplastic MA antigen family, member 5	PNMA5	114824	ENSG00000198883			Pnma5 (MGI:2180566)
chrX	153056408	153060466	Xq28	Xq28	300675	PNMA3, MA3	Paraneoplastic MA antigen 3	PNMA3	29944	ENSG00000183837			Pnma3 (MGI:2180565)
chrX	153072413	153075018	Xq28	Xq28	300917	PNMA6A, PNMA6	Paraneoplastic MA antigen family, member 6A	PNMA6A	84968	ENSG00000235961			
chrX	153179283	153183877	Xq28	Xq28	300016	MAGE1	Melanoma antigen 1 (directs expression of antigen MZ2-E)	MAGEA1	4100	ENSG00000198681	cluster of 12 genes		
chrX	153444719	153446486	Xq28	Xq28	300370	TREX2	3-prime repair exonuclease 2	TREX2	11219	ENSG00000183479			Trex2 (MGI:1346343)
chrX	153447664	153495524	Xq28	Xq28	300540	HAUS7, UCHL5IP, UIP1	HAUS augmin-like complex, subunit 7	HAUS7	55559	ENSG00000213397			Haus7 (MGI:1920988)
chrX	153494888	153509553	Xq28	Xq28	301870	BGN, SEMDX, MRLS	Biglycan	BGN	633	ENSG00000182492	proximal Xq28	Meester-Loeys syndrome, 300989 (3), X-linked; Spondyloepimetaphyseal dysplasia, X-linked, 300106 (3), X-linked recessive	Bgn (MGI:88158)
chrX	153517676	153582928	Xq28	Xq28	300014	ATP2B3, PMCA3, SCAX1	ATPase, Ca++ transporting, plasma membrane, 3	ATP2B3	492	ENSG00000067842	mutation identified in 1 family	?Spinocerebellar ataxia, X-linked 1, 302500 (3), X-linked recessive	Atp2b3 (MGI:1347353)
chrX	153587924	153599176	Xq28	Xq28	300708	FAM58A, STAR	Family with sequence similarity 58, member A	CCNQ	92002	ENSG00000262919		STAR syndrome, 300707 (3), X-linked dominant	Fam58b (MGI:1916359)
chrX	153642442	153651325	Xq28	Xq28	300134	DUSP9, MKP4	Dual-specificity phosphatase 9	DUSP9	1852	ENSG00000130829			Dusp9 (MGI:2387107)
chrX	153669722	153687567	Xq28	Xq28	300680	PNCK, CAMK1B, BSTK3	Pregnancy-upregulated, nonubiquitous, CAM kinase	PNCK	139728	ENSG00000130822			Pnck (MGI:1347357)
chrX	153688296	153696592	Xq28	Xq28	300036	SLC6A8, CRTR, CCDS1	Solute carrier family 6 (neurotransmitter transporter, creatine), member 8	SLC6A8	6535	ENSG00000130821	distal to G6PD	Cerebral creatine deficiency syndrome 1, 300352 (3), X-linked recessive	Slc6a8 (MGI:2147834)
chrX	153700491	153724745	Xq28	Xq28	300398	BCAP31, BAP31, DXS1357E, DDCH	B-cell receptor-associated protein 31	BCAP31	10134	ENSG00000185825		Deafness, dystonia, and cerebral hypomyelination, 300475 (3), X-linked recessive	Bcap31 (MGI:1350933)
chrX	153724850	153744761	Xq28	Xq28	300371	ABCD1, ALD, AMN	ATP-binding cassette, subfamily D, member 1	ABCD1	215	ENSG00000101986	about 650kb from GCP/RCP	Adrenoleukodystrophy, 300100 (3), X-linked recessive; Adrenomyeloneuropathy, adult, 300100 (3), X-linked recessive	Abcd1 (MGI:1349215)
chrX	153764195	153779345	Xq28	Xq28	300214	PLXNB3, PLXN6	Plexin B3	PLXNB3	5365	ENSG00000198753			Plxnb3 (MGI:2154240)
chrX	153781000	153785731	Xq28	Xq28	301002	SRPK3, STK23, MSSK1	Protein kinase, serine/arginine-specific, 3	SRPK3	26576	ENSG00000184343			Srpk3 (MGI:1891338)
chrX	153785765	153794522	Xq28	Xq28	300089	IDH3G	Isocitrate dehydrogenase 3 (NAD+), gamma	IDH3G	3421	ENSG00000067829			Idh3g (MGI:1099463)
chrX	153794174	153798511	Xq28	Xq28	300090	SSR4, TRAPD, CDG1Y	Signal sequence receptor, delta	SSR4	6748	ENSG00000180879		Congenital disorder of glycosylation, type Iy, 300934 (3), X-linked recessive	Ssr4 (MGI:1099464)
chrX	153802165	153830566	Xq28	Xq28	300634	PDZD4, PDZK4, PDZRN4L, KIAA1444, LU1	PDZ domain-containing 4	PDZD4	57595	ENSG00000067840			Pdzd4 (MGI:2443483)
chrX	153861513	153886173	Xq28	Xq28	308840	L1CAM, CAML1, HSAS1, MASA, SPG1	L1 cell adhesion molecule	L1CAM	3897	ENSG00000198910	between RCP/GCP cluster and G6PD	CRASH syndrome, 303350 (3), X-linked recessive; Corpus callosum, partial agenesis of, 304100 (3), X-linked recessive; Hydrocephalus due to aqueductal stenosis, 307000 (3), X-linked recessive; Hydrocephalus with Hirschsprung disease, 307000 (3), X-linked recessive; Hydrocephalus with congenital idiopathic intestinal pseudoobstruction, 307000 (3), X-linked recessive; MASA syndrome, 303350 (3), X-linked recessive	L1cam (MGI:96721)
chrX	153902530	153907165	Xq28	Xq28	300538	AVPR2, DIR, DI1, ADHR	Arginine vasopressin receptor-2	AVPR2	554	ENSG00000126895		Diabetes insipidus, nephrogenic, 304800 (3), X-linked recessive; Nephrogenic syndrome of inappropriate antidiuresis, 300539 (3), X-linked recessive	Avpr2 (MGI:88123)
chrX	153907375	153926259	Xq28	Xq28	300023	RGC1	Rho-GAP hematopoietic protein C1	ARHGAP4	393	ENSG00000089820			Arhgap4 (MGI:2159577)
chrX	153929826	153935153	Xq28	Xq28	300013	NAA10, ARD1A, ARD1, TE2, NATD, OGDNS, MCOPS1	N-alpha-acetyltransferase 10, NatA catalytic subunit	NAA10	8260	ENSG00000102030	mutation identified in 1 MCOPS1 family	?Microphthalmia, syndromic 1, 309800 (3), X-linked; Ogden syndrome, 300855 (3), X-linked recessive, X-linked dominant	Naa10 (MGI:1915255)
chrX	153935262	153944779	Xq28	Xq28	312420	RENBP	Renin-binding protein	RENBP	5973	ENSG00000102032			Renbp (MGI:105940)
chrX	153947555	153972359	Xq28	Xq28	300019	HCFC1, HCF1, MRX3	Host cell factor C1 (VP16-accessory protein)	HCFC1	3054	ENSG00000172534	50kb distal to V2R	Mental retardation, X-linked 3 (methylmalonic acidemia and homocysteinemia, cblX type ), 309541 (3), X-linked recessive	Hcfc1 (MGI:105942)
chrX	153972539	153983194	Xq28	Xq28	300059	TMEM187, CXorf12, DXS9878E, ITBA1 gene	Transmembrane protein 187	TMEM187	8269	ENSG00000177854			
chrX	154010505	154019983	Xq28	Xq28	300283	IRAK1	Interleukin 1 receptor-associated kinase 1	IRAK1	3654	ENSG00000184216			Irak1 (MGI:107420)
chrX	154019919	154019988	Xq28	Xq28	300929	MIR718	Micro RNA 718	MIR718	100313781				
chrX	154021799	154097730	Xq28	Xq28	300005	MECP2, RTT, PPMX, MRX16, MRX79, AUTSX3, MRXSL, MRXS13	Methyl-CpG-binding protein-2	MECP2	4204	ENSG00000169057	70kb centromeric of RCP/GCP	{Autism susceptibility, X-linked 3}, 300496 (3), Isolated cases, X-linked, Multifactorial; Encephalopathy, neonatal severe, 300673 (3), X-linked recessive; Mental retardation, X-linked syndromic, Lubs type, 300260 (3), X-linked recessive; Mental retardation, X-linked, syndromic 13, 300055 (3), X-linked recessive; Rett syndrome, 312750 (3), X-linked dominant; Rett syndrome, atypical, 312750 (3), X-linked dominant; Rett syndrome, preserved speech variant, 312750 (3), X-linked dominant	Mecp2 (MGI:99918)
chrX	154137726	154144285	Xq28	Xq28	300824	OPN1C	OPN1LW and OPN1MW genes, controller of		107604627				
chrX	154144223	154159031	Xq28	Xq28	300822	OPN1LW, RCP, CBP, CBBM	Red cone pigment (opsin 1, long-wave-sensitive)	OPN1LW	5956	ENSG00000102076	5' to CBD	Blue cone monochromacy, 303700 (3), X-linked recessive; Colorblindness, protan, 303900 (3), X-linked	Opn1mw (MGI:1097692)
chrX	154182595	154196860	Xq28	Xq28	300821	OPN1MW, GCP, CBD, CBBM	Green cone pigment (opsin 1, medium-wave-sensitive)	OPN1MW	2652	ENSG00000268221	linked to G6PD; multiple genes	Blue cone monochromacy, 303700 (3), X-linked recessive; Colorblindness, deutan, 303800 (3), X-linked	
chrX	154271264	154295355	Xq28	Xq28	300092	TEX28	Testis-expressed gene on Xq28	TEX28	1527	ENSG00000278057			Tex28 (MGI:2686384)
chrX	154295673	154330362	Xq28	Xq28	300044	TKTL1, TKT2, TKR	Transketolase-like 1	TKTL1	8277	ENSG00000007350	between GCP and FLN1		Tktl1 (MGI:1933244)
chrX	154348531	154374637	Xq28	Xq28	300017	FLNA, FLN1, NHBP, OPD1, OPD2, FMD, MNS, CVD1, CSBS, FGS2	Filamin A, alpha (actin-binding protein-280)	FLNA	2316	ENSG00000196924	mutation identified in 1 FGS2 patient	Cardiac valvular dysplasia, X-linked, 314400 (3), X-linked recessive; Congenital short bowel syndrome, 300048 (3), X-linked recessive; ?FG syndrome 2, 300321 (3), X-linked; Frontometaphyseal dysplasia 1, 305620 (3), X-linked recessive; Heterotopia, periventricular, 300049 (3), X-linked dominant; Intestinal pseudoobstruction, neuronal, 300048 (3), X-linked recessive; Melnick-Needles syndrome, 309350 (3), X-linked dominant; Otopalatodigital syndrome, type I, 311300 (3), X-linked dominant; Otopalatodigital syndrome, type II, 304120 (3), X-linked dominant; Terminal osseous dysplasia, 300244 (3), X-linked dominant	Flna (MGI:95556)
chrX	154379235	154381522	Xq28	Xq28	300384	EMD, EDMD, STA	Emerin	EMD	2010	ENSG00000102119	in distal Xq28	Emery-Dreifuss muscular dystrophy 1, X-linked, 310300 (3), X-linked recessive	Emd (MGI:108117)
chrX	154398064	154402338	Xq28	Xq28	312173	RPL10, DXS648, QM, AUTSX5, MRXS35	Ribosomal protein L10	RPL10	6134	ENSG00000147403		{Autism, susceptibility to, X-linked 5}, 300847 (3); Mental retardation, X-linked, syndromic, 35, 300998 (3), X-linked recessive	Rpl10 (MGI:105943)
chrX	154401235	154412100	Xq28	Xq28	300081	DNASE1L1, DNL1L	Deoxyribonuclease I-like 1	DNASE1L1	1774	ENSG00000013563	between QM and DXS1010E		Dnase1l1 (MGI:109628)
chrX	154411517	154421725	Xq28	Xq28	300394	TAZ, EFE2, BTHS, CMD3A, LVNCX	Tafazzin	TAZ	6901	ENSG00000102125		Barth syndrome, 302060 (3), X-linked recessive	Taz (MGI:109626)
chrX	154428631	154436516	Xq28	Xq28	300197	ATP6AP1, ATP6IP1, ATP6S1, VATPS1	ATPase, H+ transporting, lysosomal, accessory protein 1	ATP6AP1	537	ENSG00000071553		Immunodeficiency 47, 300972 (3), X-linked recessive	Atp6ap1 (MGI:109629)
chrX	154436912	154443466	Xq28	Xq28	300104	GDI1, RABGD1A, MRX41, MRX48	GDP dissociation inhibitor 1	GDI1	2664	ENSG00000203879		Mental retardation, X-linked 41, 300849 (3), X-linked dominant	Gdi1 (MGI:99846)
chrX	154444125	154450653	Xq28	Xq28	300453	FAM50A, DXS9928E, HXC26	Family with sequence similarity 50, member A	FAM50A	9130	ENSG00000071859			Fam50a (MGI:1351626)
chrX	154458280	154473645	Xq28	Xq28	300022	SEX	Sex chromosome X transmembrane protein of HGF receptor family 3	PLXNA3	55558	ENSG00000130827			Plxna3 (MGI:107683)
chrX	154477768	154479256	Xq28	Xq28	300060	LAGE3, ITBA2, GAMOS2	L antigen family member 3	LAGE3	8270	ENSG00000196976		Galloway-Mowat syndrome 2, X-linked, 301006 (3), X-linked recessive	
chrX	154483716	154486669	Xq28	Xq28	312070	UBL4A, GDX, UBL4, DX254E	Ubiquitin-like 4A	UBL4A	8266	ENSG00000102178	40kb 3' to G6PD		Ubl4a,Gm44504 (MGI:95049,MGI:5621304)
chrX	154487305	154490689	Xq28	Xq28	312090	SLC10A3, P3	Solute carrier family 10 (sodium/bile acid cotransporter family) member 3 (protein p3)	SLC10A3	8273	ENSG00000126903	order: G6PD-3'-(7kb)-5'-P3-3'-(0.5kb)-5'-GDX		Slc10a3 (MGI:95048)
chrX	154506158	154516256	Xq28	Xq28	300492	FAM3A	Family with sequence similarity 3, member A	FAM3A	60343	ENSG00000071889			Fam3a (MGI:1913544)
chrX	154531389	154547585	Xq28	Xq28	305900	G6PD, G6PD1	Glucose-6-phosphate dehydrogenase	G6PD	2539	ENSG00000160211		Hemolytic anemia, G6PD deficient (favism), 300908 (3), X-linked dominant; {Resistance to malaria due to G6PD deficiency}, 611162 (3)	G6pdx (MGI:105979)
chrX	154542239	154565045	Xq28	Xq28	300248	IKBKG, NEMO, FIP3, IP, IPD2, AMCBX1, IMD33	Inhibitor of kappa light polypeptide gene enhancer in B cells, kinase of, gamma (NF-kappa-B essential modulator)	IKBKG	8517	ENSG00000269335		Ectodermal dysplasia, hypohidrotic, with immune deficiency, 300291 (3); Ectodermal, dysplasia, anhidrotic, lymphedema and immunodeficiency, 300301 (3); Immunodeficiency 33, 300636 (3), X-linked recessive; Immunodeficiency, isolated, 300584 (3); Incontinentia pigmenti, 308300 (3), X-linked dominant; Invasive pneumococcal disease, recurrent isolated, 2, 300640 (3)	Ikbkg (MGI:1338074)
chrX	154585153	154586815	Xq28	Xq28	300657	CTAG1A, LAGE2A	Cancer/testis antigen 1A	CTAG1A	246100	ENSG00000268651			
chrX	154617608	154619270	Xq28	Xq28	300156	CTAG1B, CTAG1	Cancer/testis antigen 1B	CTAG1B	1485	ENSG00000184033			
chrX	154651971	154653578	Xq28	Xq28	300396	CTAG2, LAGE1, CAMEL	Cancer/testis antigen 2	CTAG2	30848	ENSG00000126890			
chrX	154675248	154751582	Xq28	Xq28	300482	GAB3	GRB2-associated binding protein 3	GAB3	139716	ENSG00000160219			Gab3 (MGI:2387324)
chrX	154762741	154777688	Xq28	Xq28	300126	DKC1, DKCX	Dyskerin	DKC1	1736	ENSG00000130826		Dyskeratosis congenita, X-linked, 305000 (3), X-linked recessive	Dkc1 (MGI:1861727)
chrX	154778683	154805526	Xq28	Xq28	305360	MPP1, PEMP, EMP55	Membrane protein, palmitoylated-1, 55kD	MPP1	4354	ENSG00000130830	~30kb 3' and centromeric to F8		Mpp1 (MGI:105941)
chrX	154835787	155022722	Xq28	Xq28	300841	F8, F8C, HEMA	Coagulation factor VIII, procoagulant component	F8	2157	ENSG00000185010	cen-G6PD-3' end of F8C-5'-ter; 1.1Mb from telomere	Hemophilia A, 306700 (3), X-linked recessive	F8 (MGI:88383)
chrX	154886359	154888060	Xq28	Xq28	305423	F8A, DXS522E, HAP40	Factor VIII associated gene 1	F8A1	8263	ENSG00000277203	3 copies, 1 in intron 22 of F8C		F8a (MGI:95474)
chrX	155064033	155071271	Xq28	Xq28	300116	MTCP1	Mature T-cell proliferation 1	MTCP1	4515	ENSG00000214827			
chrX	155071402	155126765	Xq28	Xq28	300617	BRCC3, BRCC36	BRCA1/BRCA2-containing complex, subunit 3	BRCC3	79184	ENSG00000185515			Brcc3 (MGI:2389572)
chrX	155197006	155239840	Xq28	Xq28	300133	VBP1	Von Hippel-Lindau binding protein-1	VBP1	7411	ENSG00000155959			Vbp1 (MGI:1333804)
chrX	155258233	155264588	Xq28	Xq28	300774	RAB39B, MRX72, WSMN	Ras-associated protein RAB39B	RAB39B	116442	ENSG00000155961	mutation identified in 1 WSMN family	Mental retardation, X-linked 72, 300271 (3), X-linked recessive; ?Waisman syndrome, 311510 (3), X-linked recessive	Rab39b (MGI:1915040)
chrX	155276206	155334680	Xq28	Xq28	300138	CLIC2, XAP121, MRXS32	Chloride intracellular channel 2	CLIC2	1193	ENSG00000155962	mutation identified in 1 MRXS32 family	?Mental retardation, X-linked, syndromic 32, 300886 (3), X-linked recessive	
chrX	155459418	155459934	Xq28	Xq28	300445	H2AFB, H2ABBD	H2A histone family, member B	H2AFB3	83740	ENSG00000277745			H2afb2,H2afb1,H2afb3 (MGI:3644875,MGI:3644980,MGI:3642445)
chrX	155489010	155612960	Xq28	Xq28	300777	TMLHE, BBOX2, TMLH, TMLHED, AUTSX6	Epsilon-trimethyllysine hydroxylase	TMLHE	55217	ENSG00000185973		{Autism, susceptibility to, X-linked 6}, 300872 (3), X-linked recessive	Tmlhe (MGI:2180203)
chrX	155612564	155782458	Xq28	Xq28	300531	SPRY3	Sprouty, Drosophila, homolog of, 3	SPRY3	10251	ENSG00000168939	in pseudoautosomal region PAR2		Spry3 (MGI:1345188)
chrX	155881279	155943768	Xq28	Xq28	300053	VAMP7, SYBL1, TIVAMP	Vesicle-associated membrane protein 7	VAMP7	6845	ENSG00000124333			Vamp7 (MGI:1096399)
chrX	155997580	156013016	Xq28	Xq28	300007	IL9R	Interleukin-9 receptor	IL9R	3581	ENSG00000124334	in PAR2 pseudoautosomal region		Il9r (MGI:96564)
chrX	0	156040895	Chr.X		300864	CCCSX	Cerebral-cerebellar-coloboma syndrome, X-linked		100820758			Cerebral-cerebellar-coloboma syndrome, X-linked, 300864 (2), X-linked recessive	
chrX	0	156040895	Chr.X		300471	CVMRF	Cubitus valgus with mental retardation and unusual facies		494028			Cubitus valgus with mental retardation and unusual facies, 300471 (2), X-linked recessive	
chrX	0	156040895	Chr.X		300719	DFCTRPS	Deafness, cataract, retinitis pigmentosa, and sperm abnormalities		100188774			Deafness, cataract, retinitis pigmentosa, and sperm abnormalities, 300719 (2), X-linked recessive	
chrX	0	156040895	Chr.X		300345	MCOPCB1	Microphthalmia, isolated, with coloboma 1		85503			Microphthalmia with coloboma 1, 300345 (2)	
chrX	0	156040895	Chr.X		300716	MRX95	Mental retardation, X-linked 95		102775568			Mental retardation, X-linked 95, 300716 (2), X-linked dominant	
chrX	0	156040895	Chr.X		300612	MRXSBWB	Brooks-Wisniewski-Brown syndrome		105463128			Brooks-Wisniewski-Brown syndrome, 300612 (2), X-linked recessive	
chrX	0	156040895	Chr.X		300519	MRXSMP	Mental retardation, X-linked, syndromic, Martin-Probst type		574047			Mental retardation, X-linked, syndromic, Martin-Probst type, 300519 (2), X-linked recessive	
chrX	0	156040895	Chr.X		300331	THCYTX	Thrombocythemia, X-linked		84434			Thrombocythemia, X-linked, 300331 (2), X-linked recessive	
chrY	0	300000	Yp11.32		400046	PLCXD1Y	Phospholipase C, phosphatidylinositol-specific, X domain-containing protein 1				in pseudoautosomal region		
chrY	0	10400000	Yp11		489500	XGR	XG regulator	XGR	7501		in pseudoautosomal region		
chrY	624343	659410	Ypter-p11.2	Yp11.2	400020	SHOXY	Short stature homeo box, Y-linked	SHOX	6473	ENSG00000185960	pseudoautosomal	Langer mesomelic dysplasia, 249700 (3), Autosomal recessive; Leri-Weill dyschondrosteosis, 127300 (3), Autosomal dominant; Short stature, idiopathic familial, 300582 (3)	
chrY	1190436	1212761	Yp11.3	Yp11.2	400023	CRLF2Y	Cytokine receptor-like factor 2, Y-linked	CRLF2	64109	ENSG00000205755	pseudoautosomal		
chrY	1268799	1325096	Yp11	Yp11.2	425000	CSF2RY	Granulocyte-macrophage colony-stimulating factor receptor, alpha subunit (Y chromosome)	CSF2RA	1438	ENSG00000198223	306250 = X homolog; distal to MIC2Y		
chrY	1336573	1382688	Yp11.3	Yp11.2	430000	IL3RA, IL3RY, IL3RAY	Interleukin-3 receptor (Y chromosome)	IL3RA	3563	ENSG00000185291	308385 = X homolog; pseudoautosomal		
chrY	1386151	1392145	Yp	Yp11.2	403000	ANT3Y	Adenine nucleotide translocator-3 (Y chromosome)	SLC25A6	293	ENSG00000169100	300151 = X homolog; proximal to CSF2RY		
chrY	1403138	1453793	Ypter-p11.2	Yp11.2	400011	ASMTLY	Acetylserotonin methyltransferase-like, Y-linked	ASMTL	8623	ENSG00000169093			
chrY	1591592	1602519	Ypter-p11.2	Yp11.2	465000	AKAP17A, SFRS17A, XE7Y	A kinase (PRKA) anchor protein 17A	AKAP17A	8227	ENSG00000197976	see 300015 locus		
chrY	1595454	1643080	Ypter-p11.2	Yp11.2	402500	ASMTY	Acetylserotonin methyltransferase (Y chromosome)	ASMT	438	ENSG00000196433	pseudoautosomal		
chrY	2691132	2741308	Ypter-p11.2	Yp11.2	450000	MIC2Y	Antigen identified by monoclonal 12E7, Y homolog	CD99	4267	ENSG00000002586	pseudoautosomal		
chrY	2786854	2787740	Yp11.3	Yp11.2	480000	SRY, TDF, TDY, SRXX1, SRXY1	Sex-determining region Y (testis determining factor)	SRY	6736	ENSG00000184895		46XX sex reversal 1, 400045 (3); 46XY sex reversal 1, 400044 (3)	
chrY	2841581	2866955	Yp11.3	Yp11.2	470000	RPS4Y1	Ribosomal protein S4, Y-linked, 1	RPS4Y1	6192	ENSG00000129824			Rps4x (MGI:98158)
chrY	2934401	2982507	Yp11.3	Yp11.2	490000	ZFY	Zinc finger protein, Y-linked	ZFY	7544	ENSG00000067646			
chrY	3579084	3580040	Yp11.2	Yp11.2	400025	TGIF2LY, TGIFLY	Transforming growth factor-beta-induced factor 2-like, Y-linked	TGIF2LY	90655	ENSG00000176679			
chrY	5000043	5742227	Yp11.2	Yp11.2	400022	PCDH11Y, PCDH22, PCDHY	Protocadherin 22	PCDH11Y	83259	ENSG00000099715			
chrY	6865917	6874055	Yp11	Yp11.2	410000	AMELY, AMGL	Amelogenin (Y chromosome)	AMELY	266	ENSG00000099721	301200 = X homolog		Amelx (MGI:88005)
chrY	6908593	7107153	Yp11.2	Yp11.2	400033	TBL1Y	Transducin-beta-like 1, Y-linked	TBL1Y	90665	ENSG00000092377			
chrY	7273971	7381546	Yp11.2	Yp11.2	400008	PRKY	Protein kinase, Y-linked	PRKY	5616				
chrY	9466954	9469755	Ypter-p11.2	Yp11.2	480100	TSPY1, TSPY	Testis-specific protein, Y-linked, 1	TSPY1	7258	ENSG00000258992			
chrY	10400000	26600000	Yq11		400042	DELYq11, CYDELq11, SPGFY1	Chromosome Yq11 interstitial deletion syndrome				contiguous gene deletion syndrome	Spermatogenic failure, Y-linked, 1, 400042 (4)	
chrY	10400000	57227415	Yq		425500	HEY	Hairy ears, Y-linked		100188776			?Hairy ears, Y-linked, 425500 (2), Y-linked	
chrY	10600000	26600000	Yq11.2		400032	CYorf15B	Chromosome Y open reading frame 15B						
chrY	12701230	12860842	Yq11.2	Yq11.221	400005	USP9Y, DFFRY, SPGFY2	Ubiquitin-specific protease-9, Y chromosome (Drosophila fat facets related, Y-linked)	USP9Y	8287	ENSG00000114374		Spermatogenic failure, Y-linked, 2, 415000 (3), Y-linked	Usp9y (MGI:1313274)
chrY	12903998	12920477	Yq11	Yq11.221	400010	DDX3Y, DBY	DEAD/H box-3, Y-linked	DDX3Y	8653	ENSG00000067048			Ddx3y (MGI:1349406)
chrY	13231826	13480669	Yq11	Yq11.221	400009	UTY	Ubiquitously transcribed TPR gene on Y chromosome	UTY	7404	ENSG00000183878			
chrY	13703566	13706023	Yq11.221	Yq11.221	400017	TMSB4Y	Thymosin, beta-4, Y chromosome	TMSB4Y	9087	ENSG00000154620			
chrY	13985771	13986511	Yq11.221	Yq11.221	400012	VCY, BPY1	Variably charged, Y chromosome	VCY	9084	ENSG00000129864			
chrY	14522577	14845646	Yq11.2	Yq11.221	400028	NLGN4Y, KIAA0951	Neuroligin 4, Y-linked	NLGN4Y	22829	ENSG00000165246			
chrY	17768979	17770559	Yq11.222	Yq11.222	400015	XKRY	XK-related protein on Y chromosome	XKRY	9082	ENSG00000250868			
chrY	18025786	18027745	Yq11.221	Yq11.222	400018	CDY2	Chromodomain protein, Y chromosome, 2	CDY2A	9426	ENSG00000182415			
chrY	18529677	18588962	Yq11.2	Yq11.222	400029	HSFY	Heat shock transcription factor, Y-linked	HSFY1	86614	ENSG00000172468			Hsfy2 (MGI:1918316)
chrY	19567357	19607169	Yq11.2	Yq11.222-q11.223	400031	CYorf15A	Chromosome Y open reading frame 15A	TXLNGY	246126				
chrY	19705414	19745340	Yq11	Yq11.223	426000	KDM5D, JARID1D, SMCY, HYA	Lysine-specific demethylase 5D	KDM5D	8284	ENSG00000012817	encodes H-Y epitope in mouse		Kdm5d (MGI:99780)
chrY	20575710	20593153	Yq11.223	Yq11.223	400014	EIF1AY	Eukaryotic translation initiation factor 1A, Y isoform	EIF1AY	9086	ENSG00000198692			Eif1ax (MGI:1913485)
chrY	20756067	20781031	Yq11.2	Yq11.223	400030	RPS4Y2	Ribosomal protein S4, Y-linked	RPS4Y2	140032	ENSG00000280969			
chrY	21534878	21559682	Yq11	Yq11.223	400006	RBMY1A1, RBM1, YRRM1, RBM2	RNA binding motif protein, Y chromosome, family 1, member A1	RBMY1A1	5940	ENSG00000234414			
chrY	22071755	22096006	Yq11.2	Yq11.223	400041	PRY2	PTPBL-related gene on Y, 2	PRY2	442862	ENSG00000169807			
chrY	22296797	22298875	Yq11.223	Yq11.223	400038	TTTY5	Testis-specific transcript, Y-linked, 5	TTTY5	83863				
chrY	22439592	22441458	Yq11.223	Yq11.223	400039	TTTY6	Testis-specific transcript, Y-linked, 6	TTTY6	84672				
chrY	22490290	22516302	Yq11.223	Yq11.223	400019	PRY	PTPN13-like, Y-linked	PRY	9081	ENSG00000169789			
chrY	22851583	22852714	Yq11.223	Yq11.223	400040	TTY17	Testis-specific transcript, Y-linked, 17	TTTY17A	252949				
chrY	22936454	22973283	Yq11.223	Yq11.223	400037	TTTY4	Testis-specific transcript, Y-linked, 4	TTTY4	114761				
chrY	22984262	23005464	Yq	Yq11.223	400013	BPY2	Basic protein on Y chromosome, 2	BPY2	9083	ENSG00000183753			
chrY	23129354	23199116	Yq11	Yq11.223	400003	DAZ	Deleted in azoospermia	DAZ1	1617	ENSG00000188120	?same as AZF	?Sertoli-cell-only syndrome (1)	
chrY	23219456	23291355	Yq11.2	Yq11.223	400026	DAZ2	Deleted in azoospermia 2	DAZ2	57055	ENSG00000205944			Dazl (MGI:1342328)
chrY	24209966	24214830	Yq11.23	Yq11.23	400035	GOLGA2LY	Golgi autoantigen, golgin subfamily A, 2-like, Y-linked	GOLGA2P2Y	84559				
chrY	24763068	24813491	Yq11.2	Yq11.23	400027	DAZ3	Deleted in azoospermia 3	DAZ3	57054	ENSG00000187191			
chrY	25482907	25486704	Yq11.23	Yq11.23	400034	CSPG4P1Y, CSPG4LY	Chondroitin sulfate proteoglycan 4 pseudogene 1, Y-linked	CSPG4P1Y	114758				
chrY	25622094	25625510	Yq11.23	Yq11.23	400016	CDY1, CDY	Chromodomain protein, Y chromosome	CDY1	9085	ENSG00000172288			
chrY	25728489	25733387	Yq11.23	Yq11.23	400036	TTTY3	Testis-specific transcript, Y-linked, 3	TTTY3	114760				
chrY	26600000	57227415	Yq12		475000	GCY, TSY, STA	Growth control, Y-chromosome influenced	GCY	2656				
chrY	0	57227415	Chr.Y		400043	DFNY1	Deafness, Y-linked 1	DFNY1	724074			Deafness, Y-linked 1 (1)	
chrY	0	57227415	Chr.Y		400004	RPY	Retinitis pigmentosa, Y-linked		79051			Retinitis pigmentosa, Y-linked, 400004 (2), Y-linked	
#
#
#
#
# Source of data in fields are as follows:
# -------------------------------
#
# Chromosome (NCBI)
# Genomic position start * (NCBI)
# Genomic position end (NCBI)
# Cyto location (OMIM)
# Computed cyto location (UCSC)
# MIM Number for Gene/Locus (OMIM)
# Gene symbols (OMIM)
# Gene name (OMIM)
# Approved gene symbol (HGNC)
# Entrez gene ID (NCBI)
# Ensembl gene ID (Ensembl)
# Comments (OMIM)
# Phenotype(s) (OMIM)
# Mouse gene symbol & ID (MGI)
#
# * for phenotypes with mapping key of (2) or genes not found in NCBI
# data, genomic coordinates are derived from OMIM's cyto location mapped
# to genomic using UCSC table.
#
#
# OMIM Phenotype field is nested:
# -------------------------------
#
# Each Phenotype is followed by its MIM number, if different from
# that of the locus, preceded by a comma
# Phenotype mapping key in parentheses follows the phenotype MIM
# number (explanation below).
# Allelic disorders are separated by a semi-colon following the
# phenotype mapping key.
# Inheritance for the phenotype follows the phenotype mapping key
# preceded by a ,<space>
#
#
# Phenotype Mapping Method - Appears in parentheses after a disorder :
# --------------------------------------------------------------------
# 1 - the disorder is placed on the map based on its association with
# a gene, but the underlying defect is not known.
# 2 - the disorder has been placed on the map by linkage; no mutation has
# been found.
# 3 - the molecular basis for the disorder is known; a mutation has been
# found in the gene.
# 4 - a contiguous gene deletion or duplication syndrome, multiple genes
# are deleted or duplicated causing the phenotype.
#