Toggle navigation
Toggle navigation
This project
Loading...
Sign in
Kevin Meza Landeros
/
MonogenicDiseases
Go to a project
Toggle navigation
Toggle navigation pinning
Projects
Groups
Snippets
Help
Project
Activity
Repository
Pipelines
Graphs
Issues
0
Merge Requests
0
Wiki
Snippets
Network
Create a new issue
Builds
Commits
Issue Boards
Authored by
Kevin Meza Landeros
2020-05-03 17:57:24 -0500
Browse Files
Options
Browse Files
Download
Email Patches
Plain Diff
Commit
b89298072e8469a9905da26b9a6075866a3da72f
b8929807
1 parent
d4232191
Update alineamiento.sh
Show whitespace changes
Inline
Side-by-side
Showing
1 changed file
with
7 additions
and
0 deletions
scripts/alineamiento.sh
scripts/alineamiento.sh
View file @
b892980
# ENFERMEDADES MONOGENICAS
# EQUIPO 5
# Se genera el indice de las coordenadas con el genoma de referencia
bowtie2-build Homo_sapiens.GRCh38.dna.alt.fa homos
# Se hace el mapeo de nuestras secuencias con el de genoma de Homo sapiens
bowtie2 -f -x ./homos -U sequences.fasta -S sequences_aligned.sam --no-unal
# Convertimos nuestro alineamiento a formato BAM
samtools view -Sb sequences_aligned.sam > sequences_aligned.bam
# Ordenamos el alineamiento
samtools sort sequences_aligned.bam > sequences_aligned_sort.bam
...
...
Please
register
or
login
to post a comment