RIs-GCs data sets

+SmtB	smtA	repressor	metal
+AraC	ygeA	UKNOWN: positively	arabinose
+GntR	gntT	UKNOWN: inducer	gluconate
+CRP	gntT	repressor	gluconate
+GntR	gntK	repressor	absence of gluconate
+OmpR	ompF	activator	osmolarity
+MarA	purA	UKNOWN: decline	IPTG
+Rob	zwf	activator	in vitro
+micF	OmpF	repressor	oxidative stress or weak acids
+MetJ	metE	repressor	AdoMet
+NagC	nagE	UKNOWN: binding	in vivo
+Mlc	nagE	UKNOWN: bind	in vivo
+NarL	nuo	regulator	O2 and nitrate
+IHF	nuo	regulator	O2 and nitrate
+NarP	pfl	repressor	nitrate
+NarP	nrf	activator	nitrite
+NarL	nrf	repressor	nitrate
+FNR	nirB	activator	anaerobic
+ArcA	hyb	UKNOWN: suppresses	anaerobic
+NarL	nrf	activator	low levels of nitrate
+NarL	nrf	repressor	high nitrate
+NarL	nrfA	repressor	nitrate
+NarL	nirB	activator	nitrate
+NarL	nrfA	activator	nitrite
+NarP	nrfA	activator	nitrate
+Fnr	nirB	activator	anaerobiosis
+NarL	fdnG	activator	nitrate
+NarL	fdhF	repressor	nitrate
+ModE	napF	activator	molybdate
+FNR	nrf	activator	anaerobically
+Fnr	aeg	activator	anaerobic
+NarP	aeg	activator	nitrate
+NarP	aeg	activator	nitrite rather than
+OxyR	dps	activator	during growth
+NarL	dcuB	repressor	nitrate
+ArcA	fumB	activator	anaerobic
+NarL	aspA	repressor	nitrate
+NarL	dcuSR	repressor	nitrate
+NarL	dcuS	repressor	nitrate
+NarP	hcp	activator	nitrate
+NarP	hcp	activator	nitrite
+Fis	yeaR	repressor	rich medium
+NarL	ogt	activator	nitrate
+Rob	fumC	activator	overexpression of Rob
+Rob	micF	activator	overexpression of Rob
+Rob	fumC	activator	in vitro
+Rob	nfo	activator	in vitro
+AraC	catabolic operons	activator	arabinose
+SoxS	zwf	activator	superoxide
+AraC	araBAD	activator	arabinose
+AraC	araE	activator	arabinose
+AraC	ydeNM	repressor	arabinose
+AraC	araBAD	repressor	absence of arabinose
+AraC	xylose promoter	repressor	arabinose
+AraC	araC	repressor	arabinose
+AraC	araJ	activator	arabinose
+Lrp	artPIQM	UKNOWN: regulated reciprocally	leucine
+Lrp	cycA	UKNOWN: regulated reciprocally	leucine
+Lrp	leuE	UKNOWN: regulated reciprocally	leucine
+Lrp	ilvKHMGF	UKNOWN: downregulated	leucine
+ArgP	argO	activator	arg
+ArgP	dapB	repressor	lysine
+ArgP	yggA	activator	Arg
+ArgP	dapB	repressor	lys
+ArgP	argO	UKNOWN: negative regulation	Lys
+ArgP	lysC	UKNOWN: negative regulation	Lys
+ArgP	dapB	UKNOWN: negative regulation	Lys
+ArgP	lysA	UKNOWN: negative regulation	Lys
+ArgP	argO	repressor	Lys
+ArgP	lysC	repressor	Lys
+ArgP	dapD	repressor	Lys
+ArgP	gdhA	repressor	Lys
+ArgP	dapB	regulator	lysine
+NagC	nagB	activator	chitin
+ChbR	chb	activator	chitobiose
+GntR	eda	activator	gluconate
+KdgR	eda	activator	galacturonate
+GntH	gntKU	repressor	even in the presence of gluconate
+GntR	GntI	activator	gluconate
+GntR	GntII	UKNOWN: initiates expression	gluconate
+GntH	idnD	activator	idonate
+MelR	melAB	activator	melibiose
+MelR	melAB	regulator	melibiose
+MelR	melR	UKNOWN: derepression	melibiose
+MelR	melR	repressor	absence and presence of melibiose
+CRP	melAB	activator	presence of MelR
+Fnr	oxidase gene	repressor	anaerobic
+CAP	manX	UKNOWN: expression	glucose and glycerol
+CAP	nanC	repressor	site
+CAP	nagB	activator	cAMP
+CRP	chb	activator	chitobiose
+NagC	chiP	repressor	absence of chitosugars
+ChiX	chbC	UKNOWN: downregulates	uninduced
+FNR	narGHJI	UKNOWN: expression	anaerobic growth
+NarL	narK	activator	nitrate
+NarL	frdABCD	repressor	nitrate
+narL	fdnCHI	activator	anaerobically by nitrate
+Fnr	dmsABC	regulator	oxygen and nitrate
+Fnr	frd	activator	anaerobic
+Fnr	dmsA	activator	anaerobic
+Fnr	napF	activator	anaerobiosis
+NarP	aeg	activator	nitrite
+Fnr	aeg	activator	nitrate
+Fnr	napF	activator	weakly
+NarL	napF	UKNOWN: antagonizes	in vitro
+NarL	napF	regulator	nitrate
+NarL	napF	regulator	nitrite
+NsrR	ytfE	activator	nitrite
+FNR	ydhY	activator	anaerobic
+CitB	citCDEFXGT	activator	citrate in the absence of oxygen and nitrate
+FNR	fdnGHI	UKNOWN: expression	anaerobic growth
+NarL	narGHJI	activator	nitrate
+NarL	dmsABC	repressor	nitrate
+fnr	fdnCHI	activator	anaerobically by nitrate
+RhaR	rhaSR	activator	rhamnose
+CTD	rhaSR	activator	presence of RhaR
+RhaS	rhamnose regulon	activator	rhamnose
+NarP	ydhY	regulator	nitrate
+ChbR	chb operon	activator	chitobiose
+CitA	dcuB	activator	citrate
+NarL	hcp	activator	nitrite
+CRP	fucPIK	activator	presence of fucose
+mar system	waaY	activator	antibiotics
+ArgP	argO	UKNOWN: abolish	lysine
+NorR	NorVW	activator	NO
+FNR	pnrf	activator	anaerobic
+GntH	idnO	activator	idonate
+NarL	fumB	repressor	nitrate
+NarL	pfl	repressor	nitrate
+ArgP	asd	repressor	Lys
+ArgP	dapB	repressor	Lys
+MelR	melR	repressor	melibiose
+IHF	dps	activator	stationary phase
+CAP	gntK	repressor	glucose
+MetJ	MetR	repressor	AdoMet
+XylR	xyl	repressor	arabinose
+narP	hyb	repressor	nitrate
+NarL	dmsABC	UKNOWN: negatively	nitrate
+NarP	ydhY	regulator	nitrite
+NagC	chiP	repressor	absence of chitobiose
+NsrR	ytfE	activator	nitric oxide
+MarA	waaY	regulator	salicylate
+FNR	nuo	regulator	O2 and nitrate
+CRP	araBAD	activator	glucose starvation
+Fnr	dmsABC	UKNOWN: positively	anaerobic
+Lrp	argO	UKNOWN: binding	leucine
+AraC	araFGH	activator	arabinose
+NarL	hcp	activator	nitrate
+GntH	GntI	repressor	metabolites derived from gluconate
+AppY	appA	activator	carbon and phosphate starvation
+MetR	metE	activator	in vitro
+NarP	nirB	activator	nitrate
+NorR	norV	activator	reactive nitrogen species
+ArgP	lysP	UKNOWN: negative regulation	Lys
+Fnr	yeaR	activator	nitrite
+Fnr	dmsA	activator	activation
+NagC	nag	repressor	absence of chitosugars
+Fis	ogt	repressor	rich medium
+NarL	nirB	activator	nitrite
+NarP	nrfA	activator	nitrite
+NarP	fdnG	activator	nitrate
+NarL	dmsABC	regulator	oxygen and nitrate