Training, crossvalidation and testing structural domain dataset

@@ -43,7 +43,7 @@ __author__ = 'CMendezC'
 
 # Execution:
 
-# python training-crossvalidation-testing-binding-thrombin.py
+# python training-crossvalidation-testing-dom.py
 # --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset
 # --inputTrainingData trainData.txt
 # --inputTrainingClasses trainClasses.txt
@@ -60,7 +60,7 @@ __author__ = 'CMendezC'
 # --removeStopWords
 
 # source activate python3
-# python training-crossvalidation-testing-binding-thrombin.py
+# python training-crossvalidation-testing-dom.py
 # --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset
 # --inputTrainingData trainData.txt
 # --inputTrainingClasses trainClasses.txt
@@ -75,7 +75,7 @@ __author__ = 'CMendezC'
 # --kernel linear
 # --reduction SVD200
 # --removeStopWords
-# python training-crossvalidation-testing-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset --inputTrainingData trainData.txt --inputTrainingClasses trainClasses.txt --inputTestingData testData.txt --inputTestingClasses testClasses.txt --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset/reports --outputReportFile SVM-lineal.txt --classifier SVM --kernel linear
+# python training-crossvalidation-testing-dom.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset --inputTrainingData trainData.txt --inputTrainingClasses trainClasses.txt --inputTestingData testData.txt --inputTestingClasses testClasses.txt --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset/models --outputModelFile SVM-lineal-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/structural-domain-dataset/reports --outputReportFile SVM-lineal.txt --classifier SVM --kernel linear
 # --reduction SVD200
 # --removeStopWords
 
@@ -85,7 +85,7 @@ __author__ = 'CMendezC'
 
 if __name__ == "__main__":
     # Parameter definition
-    parser = argparse.ArgumentParser(description='Training validation Binding Thrombin Dataset.')
+    parser = argparse.ArgumentParser(description='Training validation structural domain dataset.')
     parser.add_argument("--inputPath", dest="inputPath",
                       help="Path to read input files", metavar="PATH")
     parser.add_argument("--inputTrainingData", dest="inputTrainingData",
@@ -115,7 +115,7 @@ if __name__ == "__main__":
     parser.add_argument("--reduction", dest="reduction",
                       help="Feature selection or dimensionality reduction", metavar="NAME",
                       choices=('SVD200', 'SVD300', 'CHI250', 'CHI2100'), default='SVD200')
-    parser.add_option("--removeStopWords", default=False,
+    parser.add_argument("--removeStopWords", default=False,
                       action="store_true", dest="removeStopWords",
                       help="Remove stop words")