Carlos-Francisco Méndez-Cruz / lcg-bioinfoI-bionlp

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Carlos-Francisco Méndez-Cruz
2d7bab8b 1 parent 37f5d386

Training and testing binding thrombin dataset

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Showing 1 changed file with 5 additions and 5 deletions
......@@ -33,18 +33,18 @@ __author__ = 'CMendezC'
# Execution:
# python training-validation-binding-thrombin.py
# --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset
# --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset
# --inputTrainingData thrombin.data
# --inputTestingData Thrombin.testset
# --inputTestingClasses Thrombin.testset.class
# --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset/models
# --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models
# --outputModelFile SVM-model.mod
# --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset/reports
# --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports
# --outputReportFile SVM.txt
# --classifier SVM
# source activate python3
# python training-validation-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset/models --outputModelFile SVM-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/binding-thrombin-dataset/reports --outputReportFile SVM.txt --classifier SVM
# python training-validation-binding-thrombin.py --inputPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset --inputTrainingData thrombin.data --inputTestingData Thrombin.testset --inputTestingClasses Thrombin.testset.class --outputModelPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/models --outputModelFile SVM-model.mod --outputReportPath /home/compu2/bionlp/lcg-bioinfoI-bionlp/clasificacion-automatica/binding-thrombin-dataset/reports --outputReportFile SVM.txt --classifier SVM
###########################################################
# MAIN PROGRAM #
......@@ -116,7 +116,7 @@ if __name__ == "__main__":
for line in iFile:
line = line.strip('\r\n')
listLine = line.split(',')
testingData.append(listLine)
testingData.append(listLine[1:])
testingMatrix = csr_matrix(testingData, dtype='double')
with open(os.path.join(args.inputPath, args.inputTestingClasses), encoding='utf8', mode='r') \
as iFile:
......