Carlos-Francisco Méndez-Cruz

Deep Learning Workshop

......@@ -90,12 +90,13 @@ if __name__ == "__main__":
max_length = max_exon_length
else:
max_length = max_utr_length
print("Max length: {}".format(max_length))
# Fill sequence with X char to get max length
# One-hot-encoding of sequences
for sequence, label in zip(sequences, labels):
if len(sequence) < max_length:
sequence_adjust = sequence.ljust(max_length + len(sequence), 'X')
sequence_adjust = sequence.ljust(max_length - len(sequence), 'X')
print("Length sequence_adjust: {}".format(len(sequence_adjust)))
integer_encoded = integer_encoder.fit_transform(list(sequence_adjust))
integer_encoded = np.array(integer_encoded).reshape(-1, 1)
......