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/
deep-learning-workshop
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Authored by
Carlos-Francisco Méndez-Cruz
2019-05-08 13:38:18 -0500
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Commit
0351603619c65c6ebee51fca647aadc1920d99c1
03516036
1 parent
2bfdcdf9
Deep Learning Workshop
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data-sets/get-hga-training-test-py27.py
data-sets/get-hga-training-test-py27.py
View file @
0351603
...
...
@@ -90,12 +90,13 @@ if __name__ == "__main__":
max_length
=
max_exon_length
else
:
max_length
=
max_utr_length
print
(
"Max length: {}"
.
format
(
max_length
))
# Fill sequence with X char to get max length
# One-hot-encoding of sequences
for
sequence
,
label
in
zip
(
sequences
,
labels
):
if
len
(
sequence
)
<
max_length
:
sequence_adjust
=
sequence
.
ljust
(
max_length
+
len
(
sequence
),
'X'
)
sequence_adjust
=
sequence
.
ljust
(
max_length
-
len
(
sequence
),
'X'
)
print
(
"Length sequence_adjust: {}"
.
format
(
len
(
sequence_adjust
)))
integer_encoded
=
integer_encoder
.
fit_transform
(
list
(
sequence_adjust
))
integer_encoded
=
np
.
array
(
integer_encoded
)
.
reshape
(
-
1
,
1
)
...
...
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