Bacterial regulatory interaction extraction system

Prerequisites

1. Input file must be tokenized, sentence split, and POS tagged
2. Input files must be in two representations:

• Only words
• word|lemma|POS

1. iSimp
2. CoreNLP

Run

Set filenames and paths in run-bries.sh

Output

Extracted regulatory interactions can be found in:

/predicted-ris-gcs/complete-ris

Contact

Please send mail to cmendezc@ccg.unam.mx

Acknowledgments

This work was supported by UNAM-PAPIIT IA203420.