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| 1 | # Bacterial regulatory interaction extraction system | 1 | # Bacterial regulatory interaction extraction system | 
| 2 | 2 | ||
| 3 | ## Prerequisites | 3 | ## Prerequisites | 
| 4 | -1. Input file must be tokenized and sentence split | 4 | +1. Input file must be tokenized, sentence split, and POS tagged | 
| 5 | - | 5 | +2. Input files must be in two representations: | 
| 6 | - | 6 | +- Only words | 
| 7 | - | 7 | +- word|lemma|POS | 
| 8 | +3. iSimp | ||
| 9 | +3. CoreNLP | ||
| 8 | 10 | ||
| 9 | ## Run | 11 | ## Run | 
| 10 | -### Several files | 12 | +Set filenames and paths in [run-bries.sh]() | 
| 11 | -Set filenames and paths in run-several-files.sh | ||
| 12 | 13 | ||
| 13 | ## Acknowledgments | 14 | ## Acknowledgments | 
| 14 | This work was supported by UNAM-PAPIIT IA203420. | 15 | This work was supported by UNAM-PAPIIT IA203420. | 
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