Showing
1 changed file
with
28 additions
and
0 deletions
README.md
0 → 100644
1 | +# Organism annotation in sentences with regulatory interactions | ||
2 | + | ||
3 | +## Installation | ||
4 | +1. Download CoreNLP from https://stanfordnlp.github.io/CoreNLP/download.html | ||
5 | +2. Python modules progress and OGER: | ||
6 | +```shell | ||
7 | +$ pip3 install progress | ||
8 | +$ pip3 install git+https://github.com/OntoGene/OGER.git | ||
9 | +``` | ||
10 | +## Run | ||
11 | +1. Set CLASSPATH | ||
12 | +```shell | ||
13 | +$ export CLASSPATH=/path/STANFORD_CORENLP/stanford-corenlp-full-2017-06-09/* | ||
14 | +``` | ||
15 | +2. Create new dir in source | ||
16 | +```shell | ||
17 | +$ cd source | ||
18 | +$ mkdir newdir | ||
19 | +``` | ||
20 | +3. Save your text file with sentences in newdir | ||
21 | +4. Run python script with Python 3.x | ||
22 | +```shell | ||
23 | +$ cd bind | ||
24 | +$ python specie_annotation.py --file ../source/newdir/sentences.txt | ||
25 | +``` | ||
26 | + | ||
27 | +## Acknowledgments | ||
28 | +This work was supported by UNAM-PAPIIT IA203420. | ||
... | \ No newline at end of file | ... | \ No newline at end of file |
-
Please register or login to post a comment