,SentenceNumber,File,SentenceNumberPerFile,SentenceNumberInFile,NumberOfOrganism,Organisms,Mentions,OrganismSet,Sentence
0,1,1047.txt,1,2,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"This work clearly shows that , as observed in E. coli , H-NS represses expression of csgD in Salmonella .
"
1,2,1047.txt,2,4,1,Salmonella,Salmonella,Salmonella,"Furthermore , we identify H-NS as a repressor of csgD in Salmonella , instead of an activator ."
2,3,1709.txt,1,11,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To study LeuO-dependent regulation of SPI-1 in S. enterica serovar Typhimurium , transcription of the leuO gene was freed from H-NS repression by introducing a T-POP element upstream of leuO ( Fig .
"
3,4,504.txt,1,15,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"hilD expression from the strain complemented with HilD was significantly higher than hilD expression from both the reporter strain alone and the reporter carrying the empty vector ( Fig. 5 ) , indicating that in S. Typhi HilD positively regulates its own transcription , either directly or indirectly .
"
4,5,1084.txt,1,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"E. coli RpoS CRP SoxR FNR Fur acnA P2 P1 S. Typhimurium Expression of S. Typhimurium acnA is regulated by oxR Enhanced expression of the acnA gene in the acnB mutant suggested that PacnA was regulated .
"
5,6,1084.txt,2,3,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"E. coli RpoS CRP SoxR FNR Fur acnA P2 P1 S. Typhimurium Expression of S. Typhimurium acnA is regulated by ur suggested that PacnA was regulated .
"
6,7,1084.txt,3,4,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"E. coli RpoS CRP SoxR FNR Fur acnA P2 P1 S. Typhimurium Expression of S. Typhimurium acnA is regulated by NR suggested that PacnA was regulated .
"
7,8,1084.txt,4,5,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"E. coli RpoS CRP SoxR FNR Fur acnA P2 P1 S. Typhimurium Expression of S. Typhimurium acnA is regulated by RP suggested that PacnA was regulated .
"
8,9,1084.txt,5,6,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"However , the regulation of S. Typhimurium acnA differs from the E. coli paradigm in exhibiting relatively constant expression throughout Fur repression .
"
9,10,1084.txt,6,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"However , the regulation of S. Typhimurium acnA differs from the stationary-phase induction of Furactivation observed in E. coli ."
10,11,510.txt,1,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"In this study , we demonstrate that RpoS also modulates rfaH promoter activity as revealed by the absence of growth-dependent regulation of an rfaH -- O antigen production in a S. typhi rpoS mutant .
"
11,12,510.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"In this study , we demonstrate that RpoS also modulates rfaH promoter activity as revealed by the absence of growth-dependent regulation of an rfaH -- lacZ-transcriptional-fusion antigen production in a S. typhi rpoS mutant .
"
12,13,510.txt,3,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , we conclude that both RpoS control the rfaH promoter activity and concomitantly , the production of O-specific LPS in S. typhi .
"
13,14,510.txt,4,9,2,Chlorobaculum macestae;Mycoplasma iners,strain M;strain M,Chlorobaculum macestae;Mycoplasma iners,"Role of RpoS in O antigen production pSM103 This study To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed strain M103 .
"
14,15,510.txt,5,10,2,Chlorobaculum macestae;Mycoplasma iners,strain M;strain M,Chlorobaculum macestae;Mycoplasma iners,"Role of RpoS in the growth phase-dependent regulation of rfaH To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed strain M103 .
"
15,16,510.txt,6,11,2,Chlorobaculum macestae;Mycoplasma iners,strain M;strain M,Chlorobaculum macestae;Mycoplasma iners,"Role of RpoS in the growth phase-dependent regulation of rfaH To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed strain M103 .
"
16,17,510.txt,7,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Role of RpoS in O antigen production pSM103 This study To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed an isogenic derivative of S. typhi Ty2 .
"
17,18,510.txt,8,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Role of RpoS in the growth phase-dependent regulation of rfaH To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed an isogenic derivative of S. typhi Ty2 .
"
18,19,510.txt,9,14,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Role of RpoS in the growth phase-dependent regulation of rfaH To investigate whether RpoS played any role in the growth phase-dependent regulation of rfaH , we constructed an isogenic derivative of S. typhi Ty2 .
"
19,20,510.txt,10,15,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS are involved in the growth-dependent regulation of rfaH transcription in Salmonella enterica serovar Typhi .
"
20,21,510.txt,11,16,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"One reason for this phenomenon could be the fact that RpoS is involved in the growth-dependent regulation of rfaH transcription in S. typhi .
"
21,22,510.txt,12,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS are involved in the growth-dependent regulation of rfaH transcription in Salmonella enterica serovar Typhi .
"
22,23,510.txt,13,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Mol Bittner M , Valvano MA & Contreras I RpoS are involved in the growth-dependent regulation of rfaH transcription in Salmonella enterica serovar Typhi .
"
23,24,510.txt,14,19,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,RpoS are involved in the growth-dependent regulation of rfaH transcription in Salmonella enterica serovar Typhi .
24,25,538.txt,1,3,1,Salmonella,Salmonella,Salmonella,"of the RcsC/YojN/RcsB regulatory system due to the rcsC11 allele in the sensor RcsC renders Salmonella avirulent , and that inactivation of the response regulator gene rcsB restores full virulence to the rcsC11 mutant , indicative that its attenuated phenotype results from aberrant expression of RcsB-regulated genes .
"
25,26,1245.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium SL1344,SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344,"repression of fis transcription To investigate whether RpoS affected the level of transcription of the activity of the fis promoter in the SL1344 rpoS mutant was monitored during the growth of the culture .
"
26,27,1245.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium SL1344,SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344,"repression of fis transcription To investigate whether RpoS affected the level of transcription of fis in the SL1344 rpoS mutant was monitored during the growth of the culture .
"
27,28,1523.txt,1,1,3,Escherichia coli;Dioscorea trifida;Dioscorea trifida;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Name;name;S. typhimurium;typhimurium,Dioscorea trifida;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"pmrH ( the first gene of an operon that contains the genes pmrHFIJKLM ; Table 1 ) is the only known PmrAB-regulated gene for which the PmrA motif is conserved in all genome Table 1 ( Continued ) m ¬ 0.753257 CAAAATATC AATTTAAT Other yafC/STM0275 STM0256 ; Ortholog of E. coli putative transcriptional regulator LysR-type ( AAC73313 .1 ) ; Blast hit to putative transcriptional regulator , LysR family ; intergenic shared STM0275 ( drug efflux protein ) distributions Name : name of the gene in the S. typhimurium genome ( ) ."
28,29,2002.txt,1,1,4,unidentified plasmid;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Expression of fljB : z66 on a linear plasmid of Salmonella enterica serovar Typhi is regulated by OmpR .
"
29,30,2002.txt,2,2,4,unidentified plasmid;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Xu S , Zou X , Sheng X et al Expression of fljB : z66 on a linear plasmid of Salmonella enterica serovar Typhi is regulated by OmpR .
"
30,31,2002.txt,3,3,4,unidentified plasmid;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;salmonella;salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Xu S , Zou X , Sheng X et al Expression of fljB : z66 on a novel linear plasmid of salmonella enterica serovar Typhi is regulated by OmpR .
"
31,32,2002.txt,4,5,1,Salmonella,Salmonella,Salmonella,"that OmpR regulates the expression of fljB have been identified in secretion of FljB : z66 in different osmotic Salmonella by screening with the corresponding antisera .
"
32,33,2002.txt,5,6,1,Salmonella,Salmonella,Salmonella,"that OmpR regulates the expression of fljB have been identified in expression of FljB : z66 in different osmotic Salmonella by screening with the corresponding antisera .
"
33,34,2002.txt,6,7,4,unidentified plasmid;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Xu S , Zou X , Sheng X et al Expression of fljB : z66 on a novel linear plasmid of Salmonella enterica serovar Typhi is regulated by OmpR .
"
34,35,2002.txt,7,8,4,unidentified plasmid;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,Expression of fljB : z66 on a novel linear plasmid of Salmonella enterica serovar Typhi is regulated by OmpR .
35,36,935.txt,1,2,2,Cornu aspersum;Cantareus apertus;Cornu aspersum;Cantareus apertus,helix;helix;helix;helix,Cornu aspersum;Cantareus apertus,"YdcR Directly Binds to the Promoter Region of the srfN Gene -- Like other transcriptional regulators of the GntR family , YdcR also has an N-terminal helix-turn-helix DNA-binding domain ."
36,37,1292.txt,1,1,2,Felis catus;unidentified,CAT;not shown,Felis catus;unidentified,"As we expected , no regulation of ompC by LeuO was observed since no differences in CAT activity were detected in the presence or absence of LeuO ( data not shown ) ."
37,38,706.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene ; for example , expression of both the malT in E. coli is stimulated by H-NS ."
38,39,1286.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"Research A Proteomic Analysis Reveals Differential S - Regulation of katN Locus by YncC in Salmonella r , and Françoise Norel § Norel § ¶ ‡ The stationary-phase s controls a regulon required for general stress resistance of the closely related enterobacteria Salmonella and Esch .
"
39,40,1286.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"A proteomic analysis reveals differential regulation of katN locus by YncC in Escherichia coli K-12 .
"
40,41,1286.txt,3,4,1,Salmonella,Salmonella,Salmonella,A proteomic analysis reveals differential regulation of katN locus by YncC in Salmonella .
41,42,29.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Previous studies have shown that H-NS contribute to hlyE expression when E. coli is grown on a solid medium .
"
42,43,1331.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Surprisingly , we found that , in addition to the regulation by SsrB , srfJ is also negatively regulated by the repressor of the myo-inositol utilization genes in S. Typhimurium ."
43,44,2176.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,the OxyR repressor for hemi-methylated GATC sites has been shown to regulate phase variation in the E. coli agn43 gene .
44,45,1319.txt,1,4,1,Salmonella,Salmonella,Salmonella,"These data confirm previous findings with regard to hmp , and additionally demonstrate that the NsrR-regulated ytfE and STM1808 genes contribute to Salmonella virulence .
"
45,46,1319.txt,2,5,1,Mus sp.,mice,Mus sp.,"We have identified a novel NsrR-regulated gene designated STM1808 , and demonstrated a role for specific NsrR-regulated genes in promoting growth during nitrosative-stress in-vitro ( hmp , STM1808 , ygbA and hcp ) and during systemic infection of mice in-vivo ( hmp , STM1808 , ytfE ) .
"
46,47,1319.txt,3,6,1,Salmonella,Salmonella,Salmonella,STM1808 and ytfE can be added to hmp as NsrR-regulated loci that contribute to Salmonella virulence ( Fig. 6 ) .
47,48,1480.txt,1,1,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s;Salmonella,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overnight cultures of wild-type S. Typhimurium 14028s , isogenic rpoE mutant TF951 : : rpoE rpoE is required for Salmonella resistanced to anti-microbial peptides 791 were induced for 1 h in 0.2 % arabinose before treatment with 5 mg ml-1 Crp4 for 60 min respectively .
"
48,49,1480.txt,2,2,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s;Salmonella,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overnight cultures of wild-type S. Typhimurium 14028s , isogenic rpoE mutant TF951 : : rpoE rpoE is required for Salmonella resistanced to anti-microbial peptides 791 were induced for 1 h in 0.2 % arabinose before treatment with 5 mg ml-1 Crp4 for 90 min respectively .
"
49,50,1480.txt,3,3,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s;Salmonella,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overnight cultures of wild-type S. Typhimurium 14028s , the : : rpoE rpoE is required for Salmonella resistanced to anti-microbial peptides 791 were induced for 1 h in 0.2 % arabinose before treatment with 5 mg ml-1 Crp4 for 60 min respectively .
"
50,51,1480.txt,4,4,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s;Salmonella,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overnight cultures of wild-type S. Typhimurium 14028s , the : : rpoE rpoE is required for Salmonella resistanced to anti-microbial peptides 791 were induced for 1 h in 0.2 % arabinose before treatment with 5 mg ml-1 Crp4 for 90 min respectively .
"
51,52,1480.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The rpoE mutant S. Typhimurium strain has enhanced susceptibility to Crp4 .
"
52,53,1480.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of rpoE Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between fdhD .
"
53,54,1480.txt,7,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,Crp4 induce expression of rpoE Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between sE .
54,55,2189.txt,1,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Romeo , the RNA binding protein CsrA activates csrB transcription in Escherichia coli .
"
55,56,2189.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,Regulatory interactions of Csr components : the RNA binding protein CsrA activates csrB transcription in Escherichia coli .
56,57,666.txt,1,1,1,unidentified,unknown,unidentified,"However , given that the Fnr regulators can efficiently control feoB mRNA levels in response to different levels of iron , the reason remains unknown .
"
57,58,666.txt,2,2,1,unidentified,unknown,unidentified,"However , given that the Fnr regulators can efficiently control feoB mRNA levels in response to different levels of oxygen , the reason remains unknown ."
58,59,1494.txt,1,1,1,Salmonella,Salmonella,Salmonella,"RflM functions as a transcriptional repressor in the autogenous control of the Salmonella Flagellar master operon flhDC .
"
59,60,1494.txt,2,2,1,Salmonella,Salmonella,Salmonella,"RflM functions as a transcriptional repressor in the autogenous control of the Salmonella Flagellar master operon flhDC .
"
60,61,1494.txt,3,3,1,Salmonella,salmonella,Salmonella,"Hughes , K.T. RflM functions as a transcriptional repressor in the autogenous control of the salmonella flagellar master operon flhDC .
"
61,62,1494.txt,4,4,1,Salmonella,salmonella,Salmonella,"M. , K.T. RflM functions as a transcriptional repressor in the autogenous control of the salmonella flagellar master operon flhDC .
"
62,63,1494.txt,5,5,1,Salmonella,salmonella,Salmonella,"Erhardt , K.T. RflM functions as a transcriptional repressor in the autogenous control of the salmonella flagellar master operon flhDC .
"
63,64,1494.txt,6,6,1,Salmonella,salmonella,Salmonella,"H.M. , K.T. RflM functions as a transcriptional repressor in the autogenous control of the salmonella flagellar master operon flhDC .
"
64,65,1494.txt,7,7,1,Salmonella,salmonella,Salmonella,"Singer , K.T. RflM functions as a transcriptional repressor in the autogenous control of the salmonella flagellar master operon flhDC .
"
65,66,1494.txt,8,8,1,Salmonella,Salmonella,Salmonella,"RflM functions as a transcriptional repressor in the autogenous control of the Salmonella flagellar master operon flhDC .
"
66,67,1494.txt,9,12,1,Salmonella,Salmonella,Salmonella,"Hughes , K.T. RflM functions as a transcriptional repressor on the autogenous control of the Salmonella flagellar master operon flhDC .
"
67,68,1494.txt,10,13,1,Salmonella,Salmonella,Salmonella,RflM functions as a transcriptional repressor in the autogenous control of the Salmonella flagellar master operon flhDC .
68,69,896.txt,1,1,1,Salmonella,Salmonella,Salmonella,"a regulator of the LysR family , was found to be a positive effector of the ompS1 gene in Salmonella ."
69,70,882.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Lrp is a positive regulator of the expression of type 1 fimbriae in Salmonella through direct interaction with the fimZ promoter region .
"
70,71,882.txt,2,2,2,Salmonella;unidentified plasmid;unidentified plasmid,Salmonella;plasmid;plasmid,Salmonella;unidentified plasmid,"Lrp-regulated genes in Salmonella include fimZ , for type 1 fimbria expression ( 67 ) ; ilvIH , for branched amino-acid biosynthesis ( 93 ) ; hisJ , for D-histidine utilization ( 44 ) ; traJ , for conjugal transfer of virulence plasmid pSLT ( 13 ) ; and pef , for pSLT plasmid-encoded fimbriae ( 74 ) .
"
71,72,1899.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Studies with the glnA promoter of S. typhimurium have shown that NtrC bound at the enhancer , located between 2140 , interacts directly with s54 holoenzyme by means of DNA loop formation .
"
72,73,1899.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Studies with the glnA promoter of S. typhimurium have shown that NtrC bound at the enhancer , located between 2108 , interacts directly with s54 holoenzyme by means of DNA loop formation .
"
73,74,1899.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus musculus,S. Typhimurium;Typhimurium;mouse,Mus musculus;Salmonella enterica subsp. enterica serovar Typhimurium,"NtrC-dependent transcription of target genes ( Table 1 ) allows the cell to assimilate low levels of ammonia and utilize alternative nitrogen sources in nutrient-limited environments ; NtrC-regulated glnA ( glutamine synthetase ) and glnHQ ( glutamine transport ) together contribute to S. Typhimurium virulence in a mouse model and increased survival in macrophages ( Klose and Mekalanos , 1997 ) ."
74,75,1133.txt,1,1,2,Escherichia coli;unidentified plasmid,E. coli;plasmid,Escherichia coli;unidentified plasmid,"However , low pH does not seem to produce sufficient levels of active RstA in E. coli because repression of csgD transcription occurred only upon overexpression of the RstA protein from a plasmid .
"
75,76,1133.txt,2,2,2,Escherichia coli;unidentified plasmid,E. coli;plasmid,Escherichia coli;unidentified plasmid,"However , low pH does not seem to produce sufficient levels of i.e. in E. coli because repression of csgD transcription occurred only upon overexpression of the RstA protein from a plasmid ."
76,77,1669.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Cooperative interaction between Cra in the regulation of the cydAB operon of Escherichia coli .
"
77,78,1669.txt,2,4,1,Escherichia coli,Escherichia coli,Escherichia coli,Cooperative interaction between Cra in the regulation of the cydAB operon of Escherichia coli .
78,79,316.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified,S. typhimurium;typhimurium;not shown,unidentified;Salmonella enterica subsp. enterica serovar Typhimurium,"These results suggest that Fis from S. typhimurium influences the expression of cspH by binding to its promoter , although a direct interaction between the cspH promoter was not shown in this study .
"
79,80,316.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified,S. typhimurium;typhimurium;not shown,unidentified;Salmonella enterica subsp. enterica serovar Typhimurium,"These results suggest that Fis from S. typhimurium influences the expression of cspH by binding to its promoter , although a direct interaction between Fis was not shown in this study .
"
80,81,1682.txt,1,3,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Nevertheless , Hha was able to bind to the S. enterica hilA promoter with high affinity .
"
81,82,302.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"Expression of AcrAB is controlled by AcrR can also be plasmid-In this study , mutations in the QRDR of parE and in the regu ¬ 62 60 This study 60 This study 60 2 ."
82,83,464.txt,1,1,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Wang , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
83,84,464.txt,2,2,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Wang , Y. , Cen , X.F. , Zhao , G.P. , , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
84,85,464.txt,3,3,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Wang , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
85,86,464.txt,4,4,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"G.P. , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
86,87,464.txt,5,5,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Zhao , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
87,88,464.txt,6,6,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"X.F. , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
88,89,464.txt,7,7,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Cen , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
89,90,464.txt,8,8,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Y. , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB .
"
90,91,464.txt,9,9,1,Streptomyces coelicolor,Streptomyces coelicolor,Streptomyces coelicolor,"Wang , J. Characterization of a new GlnR binding box in the promoter of amtB in Streptomyces coelicolor inferred a PhoP/GlnR competitive binding mechanism for transcriptional regulation of amtB ."
91,92,1866.txt,1,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"However , we discovered that c-di-GMP , an integral part of the regulatory network promoting CsgD expression in S. Typhimurium , is not required for binding of CsgD to the csgBA and adrA promoters or for CsgD-activated transcription .
"
92,93,1873.txt,1,3,1,Escherichia coli,E. coli,Escherichia coli,"PhoPQ activates pmrD in both E. coli
"
93,94,1873.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"PhoPQ activates pmrD in both S. Typhimurium
"
94,95,1873.txt,3,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , the PhoPQ TCS indirectly activates the PmrAB TCS via PhoP-activated pmrD expression ."
95,96,303.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Although CpxR also regulates transcription of acrD , cpxR deletion strains is critically required for S. Typhimurium resistance to Na2WO4 .
"
96,97,1697.txt,1,7,1,Salmonella,Salmonella,Salmonella,"To test whether LeuO is an activator of a hilE : : lacZ translational fusion was constructed on the Salmonella chromosome .
"
97,98,1697.txt,2,8,1,Salmonella,Salmonella,Salmonella,"To test whether LeuO is an activator of hilE expression : : lacZ translational fusion was constructed on the Salmonella chromosome .
"
98,99,471.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , previous studies have determined that NsrR negatively regulates the expression of the hcp genes ."
99,100,1668.txt,1,9,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"PmrA-regulated gene mutants JSG1525 ( yibD ) and JSG1526 ( dgoA ) were as virulent as wild-type Salmonella serovar Typhimurium , so the genes interrupted have no essential role in the infection process ( Table 4 ) .
"
100,101,1668.txt,2,10,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Mus sp.,Salmonella;Typhimurium;mice;mice,Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"All PMs mutants identified in this study demonstrated a defect in virulence compared to wild-type Salmonella serovar Typhimurium when administered orally to mice , while the PmrA-regulated gene ( yibD and dgoA ) mutants showed normal virulence in mice .
"
101,102,1132.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Nitric oxide , nitrite , and Fnr regulation of hmp gene expression in Escherichia coli K-12 ."
102,103,1640.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Felis catus,SL1344;SL1344;cat,Felis catus;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,Filled bars indicate the percentage of genes more highly expressed in SL1344 than in the fis mutant ( i.e. considered as Fis-activated ) ; hatched bars represent the percentage of genes more highly expressed in the SL1344fis : : cat mutant than in the wild-type ( considered as Fis-repressed ) .
103,104,129.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Although CpxR also regulates transcription of mdtA , cpxR deletion strains is critically required for S. Typhimurium resistance to Na2WO4 .
"
104,105,897.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Transcriptional regulation of flhD by QseBC ( FliA ) in enterohaemorrhagic Escherichia coli .
105,106,667.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"L.A. Cummings , W.D. Wilkerson , T. Bergsbaken , B.T. Cookson , In vivo , fliC expression by Salmonella enterica serovar Typhimurium is eterogeneous , regulated by ClpX , Mol ."
106,107,115.txt,1,1,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"To investigate whether z66 is regulated by FlhDC like other biphasic S. enterica mutants were affected by the osmotic environment , an ompR mutant was also prepared ."
107,108,14.txt,1,1,2,Salmonella;Salmonella;unidentified,Sal-monella;monella;not shown,unidentified;Salmonella,"However , LeuO could increase transcriptional activity in N-minimal-medium , as overexpression of the leuO gene resulted in a 2-fold induction of casA transcription compared to an absence of overexpression in the wild-type Sal-monella strain -LRB- data not shown -RRB- .
"
108,109,14.txt,2,2,2,Salmonella;Salmonella;unidentified,Sal-monella;monella;not shown,unidentified;Salmonella,"However , LeuO could increase transcriptional activity in N-minimal-medium , as overexpression of the leuO gene resulted in a 2-fold induction of casA transcription compared to an absence of overexpression in the wild-type Sal-monella strain -LRB- data not shown -RRB- .
"
109,110,1330.txt,1,6,1,Escherichia coli,E. coli,Escherichia coli,other studies _ performed in E. coli where rob was shown to be negatively regulated by both SoxS by a direct interaction with its promoter region
110,111,868.txt,1,5,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"For example , the ugd promoter of Salmonella ( Fig. 1B ) , but not of Escherichia coli , harbors a PhoP box that is located much further upstream from an RNA polymerase binding site than in other PhoP-regulated promoters ( Table 3 ) .
"
111,112,868.txt,2,6,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
112,113,868.txt,3,7,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
113,114,868.txt,4,8,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
114,115,868.txt,5,9,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
115,116,868.txt,6,10,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
116,117,868.txt,7,11,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
117,118,868.txt,8,12,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
118,119,868.txt,9,13,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- ."
119,120,1324.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Inactivation of rpoN does not affect sensitivity to protamine In Salmonella , PmrA-and PhoP-regulated covalent modifications reduce the overall net negative charge of the lipopo-lysaccharide ."
120,121,28.txt,1,1,3,Escherichia coli;Dioscorea trifida;Dioscorea trifida;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Name;name;S. typhimurium;typhimurium,Dioscorea trifida;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"pmrH ( the first gene of an operon that contains the genes pmrHFIJKLM ; Table 1 ) is the only known PmrAB-regulated gene for which the PmrA motif is conserved in all genome Table 1 ( Continued ) m ¬ 0.753257 CAAAATATC AATTTAAT Other yafC/STM0275 STM0256 ; Ortholog of E. coli putative transcriptional regulator LysR-type ( AAC73313 .1 ) ; Blast hit to putative transcriptional regulator , LysR family ; intergenic shared STM0275 ( drug efflux protein ) distributions Name : name of the gene in the S. typhimurium genome ( ) .
"
121,122,707.txt,1,1,1,Salmonella,Salmonella,Salmonella,"ChbR bound to the region upstream of the chiP gene in Salmonella at the sequence .
"
122,123,707.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"no binding of ChbR to the chiP upstream region of E. coli was detected ( D )
"
123,124,707.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,no binding of ChbR to the chiP upstream region of E. coli was detected ( Fig. 2C )
124,125,1278.txt,1,4,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"To investigate whether fljB is regulated by FlhDC like other biphasic S. enterica mutants were affected by the osmotic environment , an ompR mutant was also prepared ."
125,126,2017.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the RpoS-activated promoter Px1 is the primary driver of topA transcription during stationary-phase , and it may compete with and repress the exponential-growth promoter P4 ( Qi et al. , 1997 ) ."
126,127,1522.txt,1,1,4,Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli;Felis catus;Clostridium aminobutyricum,Typhimurium;E. coli;cat;Clostridium aminobutyricum,Felis catus;Clostridium aminobutyricum;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Apart from the PhoP/PhoQ-regulated ugd ( pagA ) gene , which in serovar Typhimurium has been demonstrated to be transcriptionally active inside macrophages and to be necessary for growth in a low-magnesium environment ( 1 , 19 , 20 ) , two genes were identified with homology to the E. coli tdh gene and the cat2 gene in Clostridium aminobutyricum ."
127,128,1907.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
128,129,539.txt,1,1,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
129,130,539.txt,2,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"Indeed , experiments carried out with the PhoP-activated mgtA promoter of Escherichia coli demonstrated the critical role that certain PhoP box nucleotides play in mgtA expression and that the purified PhoP protein and RNA polymerase were sufficient to promote mgtA transcription in-vitro ( 13 ) .
"
130,131,539.txt,3,10,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] .
"
131,132,539.txt,4,13,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Mus sp.,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;mice,Salmonella enterica;Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Inactivation of the phoP or levels of the PhoP-activated genes increased , phoQ genes renders Salmonella enterica serovar reached a peak that was lower than that obtained Typhimurium five orders of magnitude less when Salmonella was induced at 50 mM Mg2 + virulent for mice and unable to proliferate within ( except for the mgtA gene , which reached the phagocytic cells ( 4-6 ) .
"
132,133,539.txt,5,28,1,unidentified,unknown,unidentified,"The PhoP-activated genes most dependent on the MgtA protein specify proteins of unknown function and , like the mgtA gene , are not required for virulence in an animal ( 19 -- 21 ) .
"
133,134,539.txt,6,29,1,Salmonella,Salmonella,Salmonella,"This motility requires the PhoP-activated mgtA , mgtC , and pagM genes , which specify a Mg2 + transporter , an inhibitor of Salmonella 
"
134,135,539.txt,7,30,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,Transcription of the PhoP-activated phoP and mgtA genes was higher in wild-type S. enterica than in strains expressing the cadAB genes constitutively when the inducing condition was acidic pH ( Fig. 6C and D ) .
135,136,511.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"With regard to transcriptional regulation of thefru operon , the results summarized here and previously , as well as unpublished results -LRB- Cao and Saier -RRB- suggest that the fru regulon in S. typhimurium is complex ; that it may consist of at least three or four operons , one encoding the IIIFm-FPr protein , fructose-i-phosphate kinase , and IIFru , a second encoding a fructose-inducible enzyme I-like protein , a third encoding the fructose repressor , FruR , and possibly a fourth encoding a cryptic 11Fru -LRB- Cao and Saier , unpublished results -RRB- ; that it is unique in its response to the loss of the cyclic AMP-CRP complex as a result of mutations in the cya , crp , or pts gene ; that it may be regulated at the transcriptional level by two or more distinct mechanisms -LRB- possibly involving two distinct inducers , fructose-i-phos-phate and fructose -RRB- which together account for induction by fructose , or that low-level expression of cryptic fru genes accounts for the anomalous fru operon induction behavior ; and that the proteins of the fructose-specific PTS may play a direct or indirect role in transcriptional regulation ."
136,137,1085.txt,1,1,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The Salmonella enterica PhoP directly activates the horizontally acquired SPI-2 gene sseL .
"
137,138,1085.txt,2,2,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The Salmonella enterica PhoP directly activates the horizontally acquired SPI-2 gene sseL .
"
138,139,1085.txt,3,3,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The Salmonella enterica PhoP directly activates the horizontally acquired SPI-2 gene sseL .
"
139,140,1085.txt,4,4,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,The Salmonella enterica PhoP directly activates the horizontally acquired SPI-2 gene sseL .
140,141,2215.txt,1,1,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"E. coli MprA proteins activate expression of hlyE , thereby conferring a hemolytic phenotype on E. coli ."
141,142,1708.txt,1,1,1,Salmonella,Salmonella,Salmonella,"We recently identified a number of new Salmonella PmrA-regulated genes , including one locus with homology to both lpt-3 and lptA of N. meningitidis ( 34 ) ."
142,143,1720.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both the cadC in SCV of macrophages .
"
143,144,1720.txt,2,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both the cadC in the Salmonellacontaining vacuole of macrophages .
"
144,145,1046.txt,1,1,1,Salmonella,Salmonella,Salmonella,"As OmpR also controls the expression of the acid-induced virulence operon ssrAB , acid shock induction of ompR was examined to gain insight into how Salmonella links virulence with survival at extreme acid-pH .
"
145,146,1046.txt,2,8,1,Salmonella,Salmonella,Salmonella,"As OmpR also controls the expression of the acid-induced virulence operon ssrAB , acid shock induction of ompR was examined to gain insight into how Salmonella links virulence with survival at extreme acid-pH .
"
146,147,1046.txt,3,15,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"CadC interacts directly with OmpR Since S. enterica serovar Typhimurium OmpR response re-gulator was shown to induce its own synthesis by binding to its promoter ( Bang et al. , 2002 ) , we hypothesized that CadC could mediate the repression of ompR gene expression by direct interaction with OmpR , sterically hindering binding of OmpR to its own promoter or RNA polymerase ."
147,148,1734.txt,1,1,3,Escherichia coli;Dioscorea trifida;Dioscorea trifida;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Name;name;S. typhimurium;typhimurium,Dioscorea trifida;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"pmrH ( the first gene of an operon that contains the genes pmrHFIJKLM ; Table 1 ) is the only known PmrAB-regulated gene for which the PmrA motif is conserved in all genome Table 1 ( Continued ) m ¬ 0.753257 CAAAATATC AATTTAAT Other yafC/STM0275 STM0256 ; Ortholog of E. coli putative transcriptional regulator LysR-type ( AAC73313 .1 ) ; Blast hit to putative transcriptional regulator , LysR family ; intergenic shared STM0275 ( drug efflux protein ) distributions Name : name of the gene in the S. typhimurium genome ( ) ."
148,149,1722.txt,1,3,2,Cornu aspersum;Cantareus apertus;Cornu aspersum;Cantareus apertus,helix;helix;helix;helix,Cornu aspersum;Cantareus apertus,"To test if the helix-turn-helix DNA-binding domain of RflM is required for RcsB/RflM-dependent repression of binding to the flhDC promoter , we analyzed the function of a RflM mutant .
"
149,150,1722.txt,2,4,2,Cornu aspersum;Cantareus apertus;Cornu aspersum;Cantareus apertus,helix;helix;helix;helix,Cornu aspersum;Cantareus apertus,"To test if the helix-turn-helix DNA-binding domain of RflM is required for RcsB/RflM-dependent repression of flhDC to the flhDC promoter , we analyzed the function of a RflM mutant ."
150,151,1087.txt,1,1,1,Triportheus paranensis,tetRA,Triportheus paranensis,"To confirm that the observed changes in Pclass2 activity are a result of the modulation of FlhD4C2 autoregulation by FliT , we replaced the flhDC promoter with tetRA ) .
"
151,152,1087.txt,2,2,1,Triportheus paranensis,tetRA,Triportheus paranensis,"To confirm that the observed changes in Pclass2 activity are a result of the modulation of FlhD4C2 autoregulation by FliT , we replaced the flhDC promoter with the tetRA element from Tn10 ( PflhDC : ) .
"
152,153,513.txt,1,1,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"From the data in Fig. 3 , it is apparent that inactivation of the ChbR repressor completely prevents residual chiP induction by chitobiose in ΔchiX background in E. coli as it does in Salmonella .
"
153,154,275.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene whose expression is positively regulated by H-NS ; for example , expression of both the malT and csiD genes in E. coli is stimulated by H-NS ( 8 , 14 ) ."
154,155,507.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,Role of multiple CytR binding sites on induction at the E. coli udp promoter .
155,156,1093.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
156,157,1252.txt,1,1,1,Triportheus paranensis,tetRA,Triportheus paranensis,"To test the hypothesis that FliZ may operate through FliT , we compared tetRA background to control for flhDC autoregulation -LRB- Fig. 4B -RRB- .
"
157,158,1252.txt,2,3,1,Xenorhabdus nematophila,Xenorhabdus nematophila,Xenorhabdus nematophila,"In the related insect pathogen Xenorhabdus nematophila , FliZ was recently shown to bind to the flhDC promoter .
"
158,159,1252.txt,3,4,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Likewise , our data show that FliZ is not a transcriptional regulator of the flhDC operon in S. enterica serovar Typhimurium , whereas it is in X. nematophila ."
159,160,2015.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Contents lists available at ScienceDirect Microbiological Research journal homepage : www.elsevier.com/locate/micres FimY of Salmonella enterica serovar Typhimurium functions as a DNA-binding protein and binds the fimZ promoter Ke-Chuan Wang a , Yuan-Hsun Hsu a , b , Yi-Ning Huang c , Jiunn-Horng Lin c , d , Kuang-Sheng c , ∗ Yeh a Graduate Institute of Medical Sciences , College of Medicine , Taipei Medical University , 250 Wu-Hsing Street , Taipei 11031 , Taiwan b Department of Microbiology and Immunology , School of Medicine , College of Medicine , Taipei Medical University , 250 Wu-Hsing Street , Taipei 11031 , Taiwan c Department of Veterinary Medicine , School of Veterinary Medicine , College of Bioresources and Agriculture , National Taiwan University , 1 Roosevelt Road , Section 4 , Taipei 10617 , Taiwan d Division of Animal Medicine , Animal Technology Institute Taiwan , Chunan , Miaoli 35053 , Taiwan i n f o a r t i c l e a b s t r a c t Salmonella enterica serovar Typhimurium produces type 1 fimbriae with binding specificity to mannose residues ."
160,161,936.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Expression of hmpA is repressed by Fur in Salmonella , making it responsive The SOS response Free radicals are potent inducers of bacterial SOS responses in-vitro ."
161,162,2001.txt,1,10,2,unidentified plasmid;Prairie vole hantavirus,plasmid;pVV,Prairie vole hantavirus;unidentified plasmid,"We used a low copy plasmid , pVV448 , in which the HilA-activated invF promoter region ( -319 bp to +128 bp , relative to the HilA-activated +1 ) is cloned upstream of lacZ .
"
162,163,2001.txt,2,11,2,unidentified plasmid;Prairie vole hantavirus,plasmid;pVV,Prairie vole hantavirus;unidentified plasmid,"We used a low copy plasmid , pVV448 , in which the HilA-activated invF promoter region ( -319 bp to +128 bp , relative to the HilA-activated +1 ) is cloned upstream of lacZ .
"
163,164,1285.txt,1,11,1,Iris germanica;Iris germanica,FLAG;FLAG,Iris germanica,"CpxR Represses hilD and thus Indirectly Affects HilD-regulated Genes Several global regulators control the expression of the SPI-1 genes by directly affecting the expression , activity or concentration of FLAG-tagged gene , was analyzed by Western blotting using monoclonal anti-FLAG or polyclonal anti-SseB antibodies .
"
164,165,1285.txt,2,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
165,166,1285.txt,3,19,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
166,167,1285.txt,4,20,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
167,168,1285.txt,5,21,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
168,169,1285.txt,6,22,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
169,170,1285.txt,7,23,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
170,171,1285.txt,8,24,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
171,172,1285.txt,9,25,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
172,173,1285.txt,10,26,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
173,174,1285.txt,11,27,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
174,175,1285.txt,12,28,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
175,176,1285.txt,13,29,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
176,177,1285.txt,14,30,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
177,178,1285.txt,15,31,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
178,179,1285.txt,16,32,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
179,180,1285.txt,17,33,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
180,181,1285.txt,18,34,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
181,182,1285.txt,19,35,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
182,183,1285.txt,20,36,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
183,184,1285.txt,21,37,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
184,185,1285.txt,22,38,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
185,186,1285.txt,23,39,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
186,187,1285.txt,24,40,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
187,188,1285.txt,25,41,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
188,189,1285.txt,26,42,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
189,190,1285.txt,27,43,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
190,191,1285.txt,28,44,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
191,192,1285.txt,29,45,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
192,193,1285.txt,30,46,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
193,194,1285.txt,31,47,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
194,195,1285.txt,32,48,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
195,196,1285.txt,33,49,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the grant D0480901 , UR Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
196,197,1285.txt,34,50,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
197,198,1285.txt,35,51,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
198,199,1285.txt,36,52,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
199,200,1285.txt,37,53,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
200,201,1285.txt,38,54,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
201,202,1285.txt,39,55,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
202,203,1285.txt,40,56,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
203,204,1285.txt,41,57,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
204,205,1285.txt,42,58,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
205,206,1285.txt,43,59,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
206,207,1285.txt,44,60,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
207,208,1285.txt,45,61,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
208,209,1285.txt,46,62,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
209,210,1285.txt,47,63,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
210,211,1285.txt,48,64,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
211,212,1285.txt,49,65,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
212,213,1285.txt,50,66,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
213,214,1285.txt,51,67,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
214,215,1285.txt,52,68,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
215,216,1285.txt,53,69,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
216,217,1285.txt,54,70,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
217,218,1285.txt,55,71,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
218,219,1285.txt,56,72,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
219,220,1285.txt,57,73,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
220,221,1285.txt,58,74,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
221,222,1285.txt,59,75,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
222,223,1285.txt,60,76,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
223,224,1285.txt,61,77,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
224,225,1285.txt,62,78,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
225,226,1285.txt,63,79,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
226,227,1285.txt,64,80,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
227,228,1285.txt,65,81,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"activity of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
228,229,1285.txt,66,82,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
229,230,1285.txt,67,83,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
230,231,1285.txt,68,84,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
231,232,1285.txt,69,85,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
232,233,1285.txt,70,86,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
233,234,1285.txt,71,87,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
234,235,1285.txt,72,88,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
235,236,1285.txt,73,89,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
236,237,1285.txt,74,90,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
237,238,1285.txt,75,91,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
238,239,1285.txt,76,92,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
239,240,1285.txt,77,93,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
240,241,1285.txt,78,94,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
241,242,1285.txt,79,95,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
242,243,1285.txt,80,96,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
243,244,1285.txt,81,97,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by grants BIO2010-15417 and AGL2013-45339-R , CB , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
244,245,1285.txt,82,98,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
245,246,1285.txt,83,99,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
246,247,1285.txt,84,100,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
247,248,1285.txt,85,101,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
248,249,1285.txt,86,102,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
249,250,1285.txt,87,103,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
250,251,1285.txt,88,104,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
251,252,1285.txt,89,105,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , grant 2014SGR1260 , CB , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
252,253,1285.txt,90,106,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
253,254,1285.txt,91,107,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
254,255,1285.txt,92,108,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
255,256,1285.txt,93,109,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , grant 2012/ACUP/00048 , CB , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
256,257,1285.txt,94,110,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
257,258,1285.txt,95,111,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Engineering Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
258,259,1285.txt,96,112,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , d Ce Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
259,260,1285.txt,97,113,3,Salmonella;Salmonella enterica;Salmonella;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of HilD are tightly Funding : This work was supported by Competitiveness , the Catalonian government , the RecerCaixa program , the Swedish Research Council Natural Sciences Abstract Gre factors-mediated control of hilD transcription is essential for the invasion of epithelial cells by Salmonella enterica serovar 1 Departament de Genètica , Microbiologia i Estadıstica , Universitat de Barcelona , Barcelona , Spain , 2 Department of Microbiology , , Tum Biology , Karolinska Institutet , Stockholm , Sweden The invasion of epithelial cells by Salmonella enterica serovar Typhimurium is a very tightly regulated proce .
"
260,261,1454.txt,1,2,1,Salmonella,Salmonella,Salmonella,"The PhoP-acti-vated mig-14 , mgtC , virK , and pagC promoters of Salmonella do not harbor a typical PhoP box in place of the 35 region , as found in archetypal PhoP-regulated promoters such as the mgtA promoter ( 13 ) .
"
261,262,1440.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Interestingly , mgrB is a PhoP-regulated gene that has been found to mediate feedback in this system , since deletion of this gene results in a potent increase in PhoP-regulated transcription in E. coli .
"
262,263,1440.txt,2,2,3,Escherichia coli;Salmonella;Salmonella;Yersinia pestis,E. coli;S. enterica;enterica;Yersinia pestis,Yersinia pestis;Escherichia coli;Salmonella,"In addition , overexpression of mgrB decreases PhoP-regulated transcription in E. coli , S. enterica , and Yersinia pestis ( 47 ) ."
263,264,842.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To better understand the putative role of FliZ as a positive regulator of flagellar gene expression , we measured gene expression from a subset of flagellar promoters in the fliZ mutant constitutively expressing fliZ from the PLtetO-1 promoter on a plasmid .
"
264,265,842.txt,2,2,1,unidentified plasmid,plasmid,unidentified plasmid,"To better understand the putative role of FliZ as a positive regulator of flagellar gene expression , we measured gene expression from a subset of flagellar promoters in an isogenic fliZ mutant constitutively expressing fliZ from the PLtetO-1 promoter on a plasmid .
"
265,266,842.txt,3,3,1,unidentified plasmid,plasmid,unidentified plasmid,"To better understand the putative role of FliZ as a positive regulator of flagellar gene expression , we measured gene expression from a subset of flagellar promoters in the wild type constitutively expressing fliZ from the PLtetO-1 promoter on a plasmid .
"
266,267,881.txt,1,1,1,Salmonella,Salmonella,Salmonella,ZupT determines changes in intracellular zinc concentration of Lack Previous studies have shown that zinT are coregulated by Zur and that ZinT accumulation is strongly induced by EDTA and repressed by zinc .23 The addition of 0.5 μM ZnSO4 to the culture medium causes the complete abrogation of ZinT accumulation in a wild type Salmonella strai
267,268,659.txt,1,3,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
268,269,659.txt,2,4,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
269,270,659.txt,3,5,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
270,271,659.txt,4,6,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
271,272,659.txt,5,7,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
272,273,659.txt,6,8,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
273,274,659.txt,7,9,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
274,275,659.txt,8,10,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
275,276,659.txt,9,11,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
276,277,659.txt,10,12,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
277,278,659.txt,11,13,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
278,279,659.txt,12,14,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
279,280,659.txt,13,15,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
280,281,659.txt,14,16,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
281,282,659.txt,15,17,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
282,283,659.txt,16,18,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
283,284,659.txt,17,19,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,StpA in S. Typhimurium was recently proposed to repress the rpoS regulon during exponential-growth
284,285,1130.txt,1,2,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"In response to AHLs , SdiA activates two Salmonella-specific loci , srgE
"
285,286,1130.txt,2,3,1,Salmonella,Salmonella,Salmonella,"In response to AHL under laboratory conditions , Salmonella SdiA activates the expression of the chromosomally encoded srgE gene .
"
286,287,1130.txt,3,4,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,Typhimu;Salmonella;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SdiA upregulates two loci in S. Typhimu-rium , resistance to complement killing operon , located on the Salmonella virulence plasmid , and srgE -LRB- sdiA-regulated gene -RRB- , a horizontally acquired gene located on the chromosome .
"
287,288,1656.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The AcrR protein is known in E. coli to repress transcription of the acrAB operon .
"
288,289,1656.txt,2,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"In S. enterica , AcrR represses expression of acrAB .
"
289,290,1656.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , AcrR represses expression of acrAB .
"
290,291,1118.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,This result suggested that YgaE does not influence the growth of S. Typhi by the regulation of ompC .
291,292,473.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Interestingly , when Salmonella was grown in low Mg2 + to induce PhoP-activated transcription , multiple short transcripts were detected with a radiolabeled DNA probe corresponding to the mgtCBR leader region ( 22 ) ."
292,293,1864.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Inactivation of rpoN does not affect sensitivity to protamine In Salmonella , PmrA-and PhoP-regulated covalent modifications reduce the overall net negative charge of the lipopo-lysaccharide ."
293,294,472.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"LeuO is known to activate bglJ in E. coli while RcsB-BglJ heterodimers activate leuO transcription .
"
294,295,472.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Schnetz , K. RcsB-BglJ activates the Escherichia coli leuO gene .
"
295,296,472.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Stratmann , T. , Pul , U. , Wurm , R. , Wagner , R. , , K. RcsB-BglJ activates the Escherichia coli leuO gene .
"
296,297,472.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Schnetz , K. RcsB-BglJ activates the Escherichia coli leuO gene .
"
297,298,472.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Stratmann , T. , Pul , U. , Wurm , R. , Wagner , R. , , K. RcsB-BglJ activates the Escherichia coli leuO gene .
"
298,299,472.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,RcsB-BglJ activates the Escherichia coli leuO gene .
299,300,1119.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;Typhi-murium,Salmonella enterica subsp. enterica serovar Typhimurium,"Interestingly , slyA of S. Typhi-murium has been shown to be induced via the PhoP/PhoQ two-component system following internalization of the bacteria by macrophages .
"
300,301,894.txt,1,4,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] .
"
301,302,880.txt,1,1,2,Phaeoacremonium santali;Salmonella;Salmonella,a 28;S. enterica;enterica,Phaeoacremonium santali;Salmonella,"Two proteins also have a 28 % identity to a 130 aa central portion of STM4509 , a modulator of HilA expression , the master regulator of pathogenicity island 1 type III secretion system in S. enterica ."
302,303,1496.txt,1,1,1,unidentified,unknown,unidentified,"The last gene in the rck operon , is a regulator of the AraC-family of transcription factors whose target genes are unknown ."
303,304,102.txt,1,11,1,Escherichia coli,E. coli,Escherichia coli,"It has been shown previously that leucine does not alter the binding of Lrp to the regulatory region of the E. coli lrp gene .
"
304,305,664.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
305,306,857.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Three binding sites for AraC protein are required for autoregulation of araC in Escherichia coli .
"
306,307,857.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,Three binding sites for AraC protein are required for autoregulation of araC in Escherichia coli .
307,308,1327.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,SL1344;14028s,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"We determined that a ugtL pmrA double mutant was as susceptible to polymyxin B as a phoP mutant ( Fig. 3C ) , which suggests that both types of lipid-A modifications may operate at the same time and argues against the participation of other PhoP-regulated genes in resistance to polymxyin B. Thus , the increased polymyxin B susceptibility reported for mutants defective in the PhoP-activated mig-14 , virK and somA genes may be characteristic of the SL1344 genetic background used in those studies ( Brodsky et al. , 2002 ; Detweiler et al. , 2003 ) because derivatives of the 14028s strain deleted for the mig-14 gene or harbouring a MudJ transposon insertion in the virK gene retained wild-type resistance to both polymxyin B and magainin 2 ( our unpublished results ) .
"
308,309,1327.txt,2,3,1,Salmonella,Salmonella,Salmonella,"The PhoP-acti-vated mig-14 , mgtC , virK , and pagC promoters of Salmonella do not harbor a typical PhoP box in place of the 35 region , as found in archetypal PhoP-regulated promoters such as the mgtA promoter ( 13 ) .
"
309,310,710.txt,1,1,1,unidentified,unidentified,unidentified,"Mutations in ams , hha and a previously unidentified PhoP-activated gene ( pag ) lead to increased hilA expression ( Fahlen et al. , 2000 , 2001 ) .
"
310,311,710.txt,2,2,1,unidentified,unidentified,unidentified,"Mutations in a previously unidentified PhoP-activated gene lead to increased hilA expression .
"
311,312,923.txt,1,3,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"For curli production in S. enterica , STM3388 activate CsgD , while four Citation Cowles KN , Willis DK , Engel TN , Jones JB , Barak JD .
"
312,313,923.txt,2,4,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"For cellulose production in S. enterica , STM3388 activate CsgD , while four Citation Cowles KN , Willis DK , Engel TN , Jones JB , Barak JD ."
313,314,2000.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ferritins are differentially regulated Previous studies in E. coli have shown that Fur positively regulates ftnA expression under Fe-replete conditions .
"
314,315,937.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"It has also been reported that the Escherichia coli Fur is a positive regulator of sodB gene expression , although the precise mechanism ... .
"
315,316,937.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Fur positive regulation of iron superoxide dismutase in Escherichia coli : functional analysis of the sodB promoter .
"
316,317,937.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Fur activation of SPI1 is not mediated through the Fur-regulated small RNAs RfrA and RfrB , which are the Salmonella ortholog and paralog of RyhB that control expression of sodB .
"
317,318,937.txt,4,9,1,Escherichia coli,Escherichia coli,Escherichia coli,"Fur positive regulation of iron superoxide dismutase in Escherichia coli : functional analysis of the sodB promoter .
"
318,319,937.txt,5,13,1,Escherichia coli,Escherichia coli,Escherichia coli,"S. Dubrac , D. Touati , Fur positive regulation of iron superoxide dismutase in Escherichia coli : functional analysis of the sodB promoter , J. Bacteriol .
"
319,320,937.txt,6,14,1,Escherichia coli,Escherichia coli,Escherichia coli,"Fur positive regulation of iron superoxide dismutase in Escherichia coli : functional analysis of the sodB promoter .
"
320,321,937.txt,7,15,1,Escherichia coli,Escherichia coli,Escherichia coli,Fur positive regulation of iron superoxide dismutase in Escherichia coli : functional analysis of the sodB promoter .
321,322,1535.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
322,323,1904.txt,1,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella,S. Typhi;Typhi;S. enterica;enterica,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,the fis expression in S. Typhi _ suggesting that Fis is also regulated by its level in S. enterica
323,324,1092.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
324,325,1086.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,The experimental evidence indicates that ArcA is a transcriptional repressor of the S. Typhimurium ompD gene .
325,326,1737.txt,1,3,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"However , the E. coli pmrD gene was induced in low Mg2 in a phoP-dependent manner , like other members of the E. coli PhoP regulon .
"
326,327,1737.txt,2,4,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"However , the E. coli pmrD gene was induced in low Mg2 in Fig. 5A , like other members of the E. coli PhoP regulon .
"
327,328,1737.txt,3,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , the PhoPQ TCS indirectly activates the PmrAB TCS via PhoP-activated pmrD expression ( Kox et al. , 2000 ) ."
328,329,1723.txt,1,1,1,unidentified,not shown,unidentified,"Using the aTc-inducible expression system , we observed that FliZ is unable to increase the activity of Pclass2 promoters in the flhDC mutant -LRB- results not shown -RRB- .
"
329,330,1723.txt,2,6,1,unidentified,unknown,unidentified,FliZ increases flhDC synthesis through an unknown mechanism .
330,331,2212.txt,1,3,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"HilD induces the expression of phoH , in the absence of other Salmonella-specific regulators .
"
331,332,2212.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD positively regulates phoH in S. Typhimurium .
"
332,333,2212.txt,3,6,1,Escherichia coli,E. coli,Escherichia coli,"HilD induces the expression of phoH , in E. coli MC4100 ."
333,334,2206.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Here we report that YgaE is a repressor of ompC in S. Typhi ; it can be partially explained why the expression of ompC is not up-regulated under hyperosmotic-stress .
"
334,335,1727.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Sequence analysis and regulation of the htrA gene of Escherichia coli : a s-32 independent mechanism of heat-inducible transcription .
335,336,1733.txt,1,1,1,unidentified plasmid,Plasmid,unidentified plasmid,"Plasmid-encoded HilD overcomes the Fis effect on hilA The hilD locus encodes an AraC-like activator of hilA expression .
"
336,337,1900.txt,1,1,1,Salmonella,Salmonella,Salmonella,"It was reported that hlyE could be activated by SlyA , an important regulator of virulence genes in Salmonella ."
337,338,258.txt,1,1,1,Salmonella,Salmonella,Salmonella,DISCUSSION A MntR-independent Mechanism _ Contributing to Mn2-re-sponsive mntH Transcription in Salmonella
338,339,270.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Interplay between global regulators of Escherichia coli : effect of H-NS on the transcription of the gene osmC .
"
339,340,270.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Gutierrez , C. Interplay between global regulators of Escherichia coli : effect of H-NS on transcription of the gene osmC ."
340,341,933.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"siiF , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
341,342,2004.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"pduF , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
342,343,927.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Microarray analysis of chemostat-cultured E. coli cells demonstrated that the RpoS-controlled mdtABC operon is upregulated in response to zinc excess ( Lee et al. , 2005 ) ."
343,344,1525.txt,1,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"SoxRS-regulated expression and genetic analysis of the yggX gene of Escherichia coli .
"
344,345,1525.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,SoxRS-regulated expression and genetic analysis of the yggX gene of Escherichia coli .
345,346,1257.txt,1,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Hantke , K. Dual repression by Fe - Mn - MntR of the mntH gene , encoding an NRAMP-like Mn transporter in Escherichia coli .
"
346,347,728.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
347,348,714.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
348,349,714.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
349,350,1479.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"C.F. OmpR are positive regulation of tppB of Salmonella typhimurium .
"
350,351,1479.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Gibson MM , Ellis EM , Graeme-Cook KA et al OmpR are pleiotropic regulatory proteins : positive regulation of tppB of Salmonella typhimurium .
"
351,352,1479.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,OmpR are positive regulation of tppB of Salmonella typhimurium .
352,353,13.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"In Escherichia coli , sbp is positively regulated by Cbl , a transcriptional regulator with 60 % amino-acid similarity to CysB , involved in the regulation of cysteine biosynthesis from organic sulfur sources ."
353,354,853.txt,1,1,1,Escherichia coli,E : coli,Escherichia coli,"InvF are sufficient to activate transcription of sicA ± lacZYA in E : coli CC118lpir .
"
354,355,1337.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RamA confers MDR in Salmonella Typhimurium via increased expression of acrB .
"
355,356,1337.txt,2,2,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB .
"
356,357,1337.txt,3,3,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB .
"
357,358,1337.txt,4,4,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB .
"
358,359,1337.txt,5,5,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB .
"
359,360,1337.txt,6,6,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"RamA confers multidrug resistance in Salmonella enterica via increased expression of acrB .
"
360,361,1337.txt,7,7,1,Salmonella;Salmonella;Salmonella,Sal-monella;monella;enterica,Salmonella,RamA confers multidrug resistance in Sal-monella enterica via increased expression of acrB .
361,362,1451.txt,1,6,1,Salmonella,Salmonella,Salmonella,"However , as the expression of lacZ pRO310 fusion was still partially repressed in a Salmonella hns , the possibility of StpA also acting as a repressor was explored as StpA is increased in a mutant hns background .
"
362,363,1451.txt,2,8,1,Salmonella,Salmonella,Salmonella,"However , as the expression of the ompS1 was still partially repressed in a Salmonella hns , the possibility of StpA also acting as a repressor was explored as StpA is increased in a mutant hns background ."
363,364,1445.txt,1,1,1,unidentified,unknown,unidentified,"The last gene in srgC , is a regulator of the AraC-family of transcription factors whose target genes are unknown .
"
364,365,648.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
365,366,660.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
366,367,660.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
367,368,660.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Hengge-Aronis , R. The LysR-like regulator LeuO n Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
368,369,660.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
369,370,660.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Hengge-Aronis , R. The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
370,371,660.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Klauck , E. , Bohringer , J. , , R. The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
371,372,660.txt,7,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"Hengge-Aronis , R. The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
372,373,660.txt,8,8,1,Escherichia coli,Escherichia coli,Escherichia coli,"Klauck , E. , Bohringer , J. , , R. The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
373,374,660.txt,9,9,1,Escherichia coli,Escherichia coli,Escherichia coli,"The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
"
374,375,660.txt,10,10,1,Escherichia coli,Escherichia coli,Escherichia coli,The LysR-like regulator LeuO in Escherichia coli is involved in the translational regulation of rpoS by affecting the expression of the small regulatory DsrA-RNA .
375,376,1486.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by the global regulators RcsB was evaluated by generating three isogenic S. Typhi deletion mutants of argR .
376,377,674.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,Examination of the sequence revealed that SoxS binds with high affinity in a manner characteristic of class I promoters in the zwf promoters of E. coli .
377,378,1109.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"FimZ binds the Salmonella typhimurium fimA promoter region and may regulate its own expression with FimY .
"
378,379,1109.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhimu,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"FimZ binds the Salmonella typhimu-rium fimA promoter region and may regulate its own expression with FimY .
"
379,380,1109.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimu,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"FimZ binds the Salmonella Typhimu-rium fimA promoter region and may regulate its own expression with FimY .
"
380,381,1109.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"[ 40 ] K. Yeh , J.K. Tinker , S. Clegg , FimZ binds the Salmonella typhimurium fimA promoter region and may regulate its own expression with FimY , Microbiol ."
381,382,1135.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"Research A Proteomic Analysis Reveals Differential S - Regulation of the Dependent yciGFE Locus by YncC in Salmonella r , and Françoise Norel § Norel § ¶ ‡ The stationary-phase s controls a regulon required for general stress resistance of the closely related enterobacteria Salmonella and Esch .
"
382,383,1135.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"Our results indicate that differences between E. coli K-12 , in the architecture of cis-acting regulatory sequences upstream of pyciG , contribute to the differential regulation of the yciGFE -LRB- katN -RRB- genes by YncC in these two enterobacteria .
"
383,384,1135.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Our results indicate that differences between Salmonella , in the architecture of cis-acting regulatory sequences upstream of pyciG , contribute to the differential regulation of the yciGFE -LRB- katN -RRB- genes by YncC in these two enterobacteria .
"
384,385,1135.txt,4,5,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"It is remarkable that in E. coli K-12 , regulation of yciGFE by YncC are intimately linked , whereas in Salmonella , YncC directly activates transcription
"
385,386,1135.txt,5,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"A proteomic analysis reveals differential regulation of the S-dependent yciGFE locus by YncC in Escherichia coli K-12 .
"
386,387,1135.txt,6,7,1,Salmonella,Salmonella,Salmonella,A proteomic analysis reveals differential regulation of the S-dependent yciGFE locus by YncC in Salmonella .
387,388,338.txt,1,1,1,Salmonella virus P22,P22,Salmonella virus P22,"Furthermore , increasing the level of DgoR by providing the corresponding gene on pFPV-dgoR was able to abolish induction of dgoT : : MudK by P22 wt , but had no obvious effect on phage infection per se .
"
388,389,338.txt,2,2,2,unidentified plasmid;Salmonella virus P22,plasmid;P22,Salmonella virus P22;unidentified plasmid,"Furthermore , increasing the level of DgoR by providing the corresponding gene on a multicopy plasmid was able to abolish induction of dgoT : : MudK by P22 wt , but had no obvious effect on phage infection per se ."
389,390,1860.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons involved in bio-film formation , EPS production
"
390,391,1860.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons involved in bio-film formation , transport production
"
391,392,1860.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons involved in bio-film formation , virulence production
"
392,393,1860.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons the upregulation of expression of lpfE genes
"
393,394,1860.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons the upregulation of expression of fimA genes
"
394,395,1848.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Such conditions may occur when the patho-gen invades host cells as in-vivo measurements suggest that Salmonella-containing vacuoles are low in ions found that , in contrast to the PhoPQ repression effect , RpoS stimulates the expression of flagella as reduced amounts of flagellin were found in an rpoS : : kan mutant .
"
395,396,1848.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Such conditions may occur when the patho-gen invades host cells as in-vivo measurements suggest that Salmonella-containing vacuoles are low in Mg2 found that , in contrast to the PhoPQ repression effect , RpoS stimulates the expression of flagella as reduced amounts of flagellin were found in an rpoS : : kan mutant .
"
396,397,1848.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Such conditions may occur when the patho-gen invades host cells as in-vivo measurements suggest that Salmonella-containing vacuoles are acidic in ions found that , in contrast to the PhoPQ repression effect , RpoS stimulates the expression of flagella as reduced amounts of flagellin were found in an rpoS : : kan mutant .
"
397,398,1848.txt,4,4,1,Salmonella,Salmonella,Salmonella,"Such conditions may occur when the patho-gen invades host cells as in-vivo measurements suggest that Salmonella-containing vacuoles are acidic in Mg2 found that , in contrast to the PhoPQ repression effect , RpoS stimulates the expression of flagella as reduced amounts of flagellin were found in an rpoS : : kan mutant .
"
398,399,1848.txt,5,8,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"In E. coli , the genes overlap with those of the RpoS regulon although induction of rpoS itself is not enough for the increased acid resistance observed since rpoS did not protect E. coli from subsequent exposure to pH 3 .
"
399,400,1848.txt,6,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"However , rpoS might also contribute to the virulence of this serotype because RpoS − strains of S. Typhi are less cytotoxic than RpoS + strai
"
400,401,1848.txt,7,21,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"9 100 90 8 80 70 7 6 The rpoS alleles determine the salt-inducible VBNC state in Salmonella enterica 60 50 5 4 40 30 Osmotic stress reduced the amount of RpoS protein in the three strains during the induction of the VBNC state .
"
401,402,1848.txt,8,22,4,Salmonella;Salmonella enterica;Salmonella;Lopadostoma turgidum;Salmonella enterica subsp. enterica serovar Typhimurium LT2,Salmonella;Salmonella enterica;enterica;LT2;LT2,Salmonella enterica;Lopadostoma turgidum;Salmonella enterica subsp. enterica serovar Typhimurium LT2;Salmonella,"9 100 90 8 80 70 7 6 The rpoS alleles determine the salt-inducible VBNC state in Salmonella enterica 60 50 5 4 40 30 Osmotic stress reduced the amount of RpoS protein in LT2 during the induction of the VBNC state .
"
402,403,1848.txt,9,23,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"9 100 90 8 80 70 7 6 The rpoS alleles determine the salt-inducible VBNC state in Salmonella enterica 60 50 5 4 40 30 Osmotic stress reduced the amount of RpoS protein in S. Oranienburg Sa99004 during the induction of the VBNC state .
"
403,404,1848.txt,10,24,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"9 100 90 8 80 70 7 6 The rpoS alleles determine the salt-inducible VBNC state in Salmonella enterica 60 50 5 4 40 30 Osmotic stress reduced the amount of RpoS protein in S. Dublin KDX1 during the induction of the VBNC state .
"
404,405,1848.txt,11,25,4,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica;Lopadostoma turgidum;Salmonella enterica subsp. enterica serovar Typhimurium LT2,S. Typhimurium;Typhimurium;strain LT2;LT2;LT2,Salmonella enterica;Lopadostoma turgidum;Salmonella enterica subsp. enterica serovar Typhimurium LT2;Salmonella enterica subsp. enterica serovar Typhimurium,"In this study , we investigated effect of rpoS disruption and expression on intracellular levels of RpoS during induction of VBNC state , using S. Typhimurium strain LT2 .
"
405,406,1690.txt,1,1,1,Salmonella,Salmonella,Salmonella,5 The Salmonella endogenous promoter for pepT is regulated by CRP .
406,407,304.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
407,408,476.txt,1,2,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"From the data in Fig. 3 , it is apparent that inactivation of the ChbR repressor completely prevents residual chiP induction by chitobiose in ΔchiX background in E. coli as it does in Salmonella .
"
408,409,476.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"Given that the E. coli sequence lacks the ChbR binding site and shows no binding to the purified protein in-vitro , these findings suggest that the ChbR requirement for the residual induction of chiP by chitobiose is independent of ChbR binding to the chiP promoter region .
"
409,410,476.txt,3,4,1,Salmonella;Salmonella;Salmonella,Sal-monella;monella;Salmonella,Salmonella,"Final proof that the ChbR binding site at − 180 in Sal-monella is not implicated in chitobiose induction of chiP came from replacing the ChbR binding site in Salmonella with h 11 -- lacZ fusion construct on the chromosome .
"
410,411,476.txt,4,6,1,Salmonella,Salmonella,Salmonella,"Furthermore , replacement of the ChbR binding site in the Salmonella chiP promoter region with the sequence did not affect chiP induction by chitobiose to any significant extent .
"
411,412,1684.txt,1,2,1,Salmonella,Salmonella,Salmonella,5 The Salmonella endogenous promoter for pepT is regulated by Fnr .
412,413,305.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to adrA promoter regions In S. Typhimurium the expression of csgBA is positively regulated by the transcriptional regulator CsgD .
"
413,414,305.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to the csgBA In S. Typhimurium the expression of adrA is positively regulated by the transcriptional regulator CsgD .
"
414,415,305.txt,3,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to the csgBA In S. Typhimurium the expression of csgBA is positively regulated by the transcriptional regulator CsgD .
"
415,416,305.txt,4,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to the csgBA In S. Typhimurium the expression of csgBA is positively regulated by the transcriptional regulator CsgD .
"
416,417,463.txt,1,3,1,Escherichia coli,E. coli,Escherichia coli,"crl transcription in E. coli W3110 is repressed by Fur -LRB- by 100-fold -RRB- -LRB- by more than 10-fold -RRB- .
"
417,418,1120.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Anaerobic regulation of the Escherichia coli dmsABC operon requires the molyb-date-responsive regulator ModE .
418,419,1652.txt,1,1,3,Salmonella;Escherichia coli;unidentified plasmid,Salmonella;E. coli;plasmid,Escherichia coli;Salmonella;unidentified plasmid,"Therefore , this enzyme activity would be another determinant for the RstAcontrolled iron response in Salmonella and also a reason that expression of the E. coli feoB gene from plasmid results in equally enhanced Fe ( II ) uptake in cells grown aerobically or anaerobically ( 12 ) .
"
419,420,488.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
420,421,488.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
421,422,488.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
422,423,488.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
423,424,488.txt,5,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
424,425,488.txt,6,7,1,Salmonella,Salmonella,Salmonella,"Other regulators of AcrR did not contrib-ute to acrAB induction by indole in Salmonella .
"
425,426,488.txt,7,8,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
426,427,488.txt,8,9,1,Escherichia coli,Escherichia coli,Escherichia coli,"D. Ma , M. Alberti , C. Lynch , H. Nikaido , J.E. Hearst , The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals , Mol .
"
427,428,488.txt,9,11,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
428,429,488.txt,10,12,1,Escherichia coli,Escherichia coli,Escherichia coli,"The local repressor AcrR plays a modulating role in the regulation of acrAB genes of Escherichia coli by global stress signals .
"
429,430,488.txt,11,13,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by AcrR , ."
430,431,113.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
431,432,661.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"In response to AHLs , SdiA activates two Salmonella-specific loci , the rck operon
"
432,433,661.txt,2,2,1,Salmonella,Salmonella,Salmonella,"In response to AHL under laboratory conditions , Salmonella SdiA activates the expression of the rck operon .
"
433,434,661.txt,3,3,1,Salmonella,Salmonella,Salmonella,"In Salmonella , rck is induced by SdiA .
"
434,435,661.txt,4,4,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,Typhimu;Salmonella;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SdiA upregulates two loci in S. Typhimu-rium , the rck operon , located on the Salmonella virulence plasmid , and srgE -LRB- sdiA-regulated gene -RRB- , a horizontally acquired gene located on the chromosome .
"
435,436,661.txt,5,9,1,Salmonella,Salmonella,Salmonella,SdiA in Salmonella activates expression of the rck operon .
436,437,107.txt,1,1,1,hybrid,hybrid,hybrid,"Efforts in our laboratory to demonstrate binding of purified HilE protein to the hilA promoter have failed , however , recent work demonstrated that the HilE protein interacts with HilD , using a bacterial two-hybrid assay .
"
437,438,107.txt,2,4,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , a hilA was regulated by HilE only when HilD protein was present .
"
438,439,107.txt,3,9,1,hybrid,hybrid,hybrid,Fahlen et al. identified HilE as a negative regulator of hilA transcription provided bacterial two-hybrid data .
439,440,1336.txt,1,1,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Our finding that CpxR can influence the susceptibility of S. enterica serovar Typhimurium to β-lactam in both △ acrB backgrou also supports the second suggestion .
"
440,441,1336.txt,2,2,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Our finding that CpxR can influence the susceptibility of S. enterica serovar Typhimurium to aminoglycosides in both △ acrB backgrou also supports the second suggestion .
441,442,2171.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To obtain a global view of ArcA-controlled biological processes , we classified proteins with altered expression levels in S. Typhimurium arcA cells into Clusters of Orthologous Groups ( COGs ) ( Table I ) ."
442,443,1478.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of hyaB in Salmonella typhimurium .
"
443,444,1478.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of hyaB in Salmonella typhimurium ."
444,445,846.txt,1,1,2,Lateolabrax japonicus;Escherichia coli,Suzuki;Escherichia coli,Escherichia coli;Lateolabrax japonicus,"T. Suzuki , C. Ueguchi , T. Mizuno , H-NS regulates OmpF expression through micF antisense RNA in Escherichia coli , J. Bacteriol ."
445,446,2165.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"H-NS-dependent repression of clyA in the E. coli K-12 STy strains YMZ19 ( clyA hns ) ( shaded bars ) .
"
446,447,2165.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"H-NS-dependent repression of clyA in the E. coli K-12 STy strains YMZ19 ( clyA hns ) ( shaded bars ) _ carrying different constructs
"
447,448,701.txt,1,1,1,Salmonella,Salmonella,Salmonella,"sseJ ( Figure 2 ) was further analyzed because although PmrAB-regulated genes have been implicated in animal virulence [ 2 ] , no direct link between SPI-2 ( Salmonella pathogenicity island 2 ) gene regulation and PmrAB has been demonstrated yet .
"
448,449,715.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Osborne et al. [ 27 ] recently reported that srfN , an ancestral PhoP-regulated gene , acquired an SsrB-regula-tory module during Salmonella "
449,450,729.txt,1,1,1,Pasteurella multocida,Pasteurella multocida,Pasteurella multocida,"In agreement with this possibility , it has been recently demonstrated that the fur gene of Pasteurella multocida , is positively regulated by the cAMP-CRP complex .
"
450,451,729.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To ascertain whether transcription of other cAMP-CRP-dependent promoters is affected in the fur mutant , the induction of the basal expression of the cAMP-regulated S. typhimurium pepE gene , was analysed .
"
451,452,729.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"To ascertain whether transcription of other cAMP-CRP-dependent promoters is affected in the fur mutant , the induction of the E. coli lac operon , was analysed ."
452,453,1530.txt,1,1,1,synthetic construct,Primer,synthetic construct,"Primer extension and DNase I footprinting identified multiple SsrB-regulated promoters within SPI-2 located upstream of ssaB , sseA , ssaG and ssaM ."
453,454,2039.txt,1,1,1,Felis catus,cat,Felis catus,"the expression of the hilD-cat fusion _ revealing that CpxR represses hilD
"
454,455,1524.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by Fnr ."
455,456,926.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
456,457,1518.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
457,458,1097.txt,1,3,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
458,459,1097.txt,2,4,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
459,460,1097.txt,3,5,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
460,461,1097.txt,4,6,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
461,462,1097.txt,5,7,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
462,463,1097.txt,6,8,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
463,464,1097.txt,7,9,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
464,465,1097.txt,8,10,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"sRNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
465,466,1097.txt,9,11,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
466,467,1097.txt,10,12,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
467,468,1097.txt,11,13,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
468,469,1097.txt,12,14,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs RprA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
469,470,1097.txt,13,15,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
470,471,1097.txt,14,16,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes turnover of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth .
"
471,472,1097.txt,15,17,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of rss at various stages throughout the exponential phase of growth .
"
472,473,1097.txt,16,18,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"The small RNAs DsrA have a greater role in the control of E. coli rpoS expression compared to Salmonella , whereas the H-NS paralog StpA promotes proteolysis of σS indirectly through the repression of the antiadapter protein encoding gene ira at various stages throughout the exponential phase of growth ."
473,474,1929.txt,1,8,1,unidentified,not shown,unidentified,"The data indicate that assT is induced in N-minimal-medium in the absence of LeuO , since the same activity was observed in all of the constructions in a leuO isogenic background -LRB- data not shown -RRB- .
"
474,475,1929.txt,2,9,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In a subsequent study to pursue more targets in Salmonella Typhi , LeuO was found to also positively regulate assT ."
475,476,265.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , five transcription factors have been implicated : hmp transcription is repressed by FNR .
"
476,477,265.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , five transcription factors have been implicated : hmp transcription is repressed by FNR ."
477,478,271.txt,1,2,1,unidentified,not shown,unidentified,"On the other hand , neither Ca2 + nor Co2 + , K + , Ni2 + , Zn2 + , Mn2 + , Cu2 + , Ga3 + or Ru3 + ( at concentrations of up to 1 mM ) could induce PmrA-activated genes ( Wosten et al. , 2000 ) or kill the DpmrC ugd pmrG triple mutant ( data not shown ) .
"
478,479,517.txt,1,1,1,unidentified,unknown,unidentified,"Two of these loci , STM4118 , hereafter called cptA , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
479,480,517.txt,2,2,1,unidentified,unknown,unidentified,"Two of these loci , STM4118 , hereafter called cptA , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
480,481,517.txt,3,3,1,unidentified,unknown,unidentified,"Two of these loci , yijP , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
481,482,517.txt,4,4,1,unidentified,unknown,unidentified,"Two of these loci , yijP , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
482,483,517.txt,5,5,1,unidentified,unknown,unidentified,"Two of these loci , pmrC , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
483,484,517.txt,6,6,1,unidentified,unknown,unidentified,"Two of these loci , pmrC , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM0834 was unknown .
"
484,485,1083.txt,1,1,4,Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli;Felis catus;Clostridium aminobutyricum,Typhimurium;E. coli;cat;Clostridium aminobutyricum,Felis catus;Clostridium aminobutyricum;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Apart from the PhoP/PhoQ-regulated ugd ( pagA ) gene , which in serovar Typhimurium has been demonstrated to be transcriptionally active inside macrophages and to be necessary for growth in a low-magnesium environment ( 1 , 19 , 20 ) , two genes were identified with homology to the E. coli tdh gene and the cat2 gene in Clostridium aminobutyricum ."
485,486,259.txt,1,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli RpoS CRP SoxR FNR Fur acnA P2 P1 S. Typhimurium Expression of S. Typhimurium acnA is regulated by oxR Enhanced expression of the acnA gene in the acnB mutant suggested that PacnA was regulated .
486,487,1901.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of micF is controlled by SoxS ."
487,488,1040.txt,1,1,1,synthetic construct,primer,synthetic construct,"Among the SPI-5 genes , primer-extension analysis revealed that sopB were induced at entry into the stationary-phase under standard growt conditions independently of RpoS ."
488,489,1730.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"In view of the disparate regulation of the S. Typhimu-rium Fe storage proteins by Fur , the virulence of a fur mutant was also examined .
"
489,490,1730.txt,2,6,1,unidentified plasmid,plasmid,unidentified plasmid,"Accession Log2 geometric p-value mean fold change Gene Definition/function/gene product Pathogenicity island hilD SPI-1 regulator a spaP SPI-1 surface presentation of antigens sprB SPI-1 transcriptional regulator ssaL SPI-2 secretion system apparatus protein AE008831 6.95 AE008832 1.90 2.13 E 07 0.0033 AE008831 1.99 0.0033 AE008761 1.63 0.0012 Virulence-associated fur Regulator of the Fur possibly oxygen-radicals mig5 Macrophage-inducible , a putative carbonic anhydrase , found on virulence plasmid 5.55 E 05 AE008728 2.23 Fig. 1 .
"
490,491,1730.txt,3,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by Fur was evaluated by generating three isogenic S. Typhi deletion mutants of fur .
491,492,1042.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
492,493,501.txt,1,4,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To study LeuO-dependent regulation of SPI-1 in S. enterica serovar Typhimurium , transcription of the leuO gene was freed from H-NS repression by introducing a T-POP element upstream of leuO ( Fig ."
493,494,1081.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Two-stage control of the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS gene .
"
494,495,1081.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Two-stage control of the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS regulatory gene .
"
495,496,1081.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,Two-stage control of the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS gene .
496,497,273.txt,1,1,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"However , in contrast to E. coli , S. Typhimurium acnA was activated , by Fur .
"
497,498,273.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"However , the regulation of S. Typhimurium acnA differs from the stationary-phase induction of Furactivation observed in E. coli ."
498,499,924.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Altogether , these results show that bapA , like csgAB , is regulated by CsgD , which plays a central role in biofilm formation in Salmonella strains .
"
499,500,924.txt,2,2,2,Salmonella;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Enteritidis;S. Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Interestingly , the gene bapA and genes of the capsule operons , which are regulated by CsgD in S. enterica serovar Enteritidis strains ( Latasa et al. , 2005 ; Gibson et al. , 2006 ) were not found to be CsgD-regulated in S. Typhimurium under the experimental conditions ."
500,501,1268.txt,1,2,1,synthetic construct,primer,synthetic construct,Our results from primer-extension demonstrate that transcriptions of the identified loci are activated by PhoP because the mRNA level of transcripts is reduced significantly in the slyA mutants grown in low-Mg2 conditions -LRB- Fig .
501,502,918.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS stabilization where PhoPQ participates by serving as a transcriptional activator of the iraP gene in S. Typhimurium
"
502,503,1240.txt,1,9,1,Escherichia coli,E. coli,Escherichia coli,"other studies _ performed in E. coli where rob was shown to be negatively regulated by both MarA by a direct interaction with its promoter region
"
503,504,703.txt,1,4,1,Glyptocephalus cynoglossus,witch,Glyptocephalus cynoglossus,"The result that the expression of the mgtA-lacZ fusion is essentially insensitive to the Mg2 concentration in the ribos-witch mutants is unexpected , because the initiation of transcription at the mgtA promoter would be predicted to be subject to residual control by this cation via the PhoPQ system ."
504,505,1283.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : a phoN Fig. 4A , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion .
"
505,506,1283.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : a phoN SW681 , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion ."
506,507,850.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
507,508,850.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
508,509,2173.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Regulation of expression of the ethanol dehydrogenase gene ( adhE ) in Escherichia coli by catabolite repressor activator protein Cra .
509,510,1308.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To circumvent this issue and facilitate the examination of YdcRregulated srfN transcription in-vitro , we further introduced a YdcR-expressing plasmid into the ydcR strain , whose expression is under the control of arabinose .
"
510,511,1308.txt,2,6,1,Salmonella;Salmonella,Sal-monella;monella,Salmonella,Further-galactosidase assays of Sal-monella strains also confirmed that YdcR can mediate transcriptional regulation of srfN in bacteria .
511,512,1320.txt,1,1,1,Terfezia albida,to 15,Terfezia albida,"Compared with the wild type , the expression levels of the pmrH gene in the mutants with reduced susceptibility were increased 2-to 15-fold , showing that the pmrB mutations changed the regulation of the PmrA-PmrB-dependent genes ."
512,513,1446.txt,1,1,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,HU has been reported to regulate narH positively in E. coli whereas hupA acts negatively on narH transcription in Salmonella -LRB- Supplementary Fig .
513,514,111.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Paratyphi,S. Typhimurium;Typhimurium;Paratyphi,Salmonella enterica subsp. enterica serovar Paratyphi;Salmonella enterica subsp. enterica serovar Typhimurium,"In contrast to S. Typhimurium and S. Paratyphi B dT , no pagK ( encoding a PhoPQ-activated protein ) was detected , but stkC was present .
"
514,515,105.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
515,516,105.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
516,517,1491.txt,1,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,S. Typhimurium;S. Typhimurium SL1344;Typhimurium;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium,"In this work , by applying a clustering method to S. Typhimurium SL1344 global expression data from the COLOMBOS database , we show that most of the known genes regulated by HilD , including the flagellar/chemot-axis genes , are indeed co-expressed with SPI-1 ; moreover , nine novel genes were identified : phoH .
"
517,518,1491.txt,2,8,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL4247-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
518,519,1491.txt,3,9,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL3812-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
519,520,1491.txt,4,10,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of lpxR-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
520,521,1491.txt,5,11,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of sinR-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
521,522,1491.txt,6,12,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of phoH-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
522,523,1491.txt,7,13,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of gtgE-cat ; consistently , HilD bound to the regulatory regions of phoH .
"
523,524,1491.txt,8,14,2,Felis catus;Escherichia coli,cat;E. coli,Felis catus;Escherichia coli,"Additionally , we show that HilD can induce SL1896-cat , transcriptional-fusions , in the E. coli MC4100 strain ; consistently , HilD bound to the regulatory regions of phoH .
"
524,525,1491.txt,9,15,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of FlhDC ; consistently , HilD bound to the regulatory regions of phoH .
"
525,526,1491.txt,10,16,2,Felis catus;Salmonella;Salmonella,cat;Salmonella;Salmonella-specific,Felis catus;Salmonella,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of other Salmonella-specific regulators ; consistently , HilD bound to the regulatory regions of phoH .
"
526,527,663.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , the Fis-regulated E. coli proP gene seems to be regulated in a manner similar to that of hilA , in that levels are low during early exponential phase growth , followed by a burst of expression in late exponential-growth and a decrease in expression during stationary-phase ( Xu and Johnson , 1995 ) .
"
527,528,663.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,SL1344;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344,"proP and other Intraperitoneal LD50 5 , 25 , 25 4 10 3 10 7 SL1344 SL1344 fis : : kan Fis-regulated promoters have been found to have both low-affinity and high-affinity Fis binding sites ."
528,529,1644.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene the upregulation of expression of fimA genes
"
529,530,1644.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons the upregulation of expression of fimA genes"
530,531,1122.txt,1,1,1,Salmonella,Salmonella,Salmonella,"By 120 min , the PmrA-dependent lipid-A modifications were wild-type Salmonella and expressed lower amounts of pbgP transcript than Figures 6B .
"
531,532,1122.txt,2,2,1,Salmonella,Salmonella,Salmonella,"By 120 min , the PmrA-dependent lipid-A modifications were wild-type Salmonella and expressed lower amounts of pbgP transcript than the ugd mutant .
"
532,533,1122.txt,3,3,1,Salmonella,Salmonella,Salmonella,"By 120 min , the PmrA-dependent lipid-A modifications were visible Salmonella and expressed lower amounts of pbgP transcript than Figures 6B .
"
533,534,1122.txt,4,4,1,Salmonella,Salmonella,Salmonella,"By 120 min , the PmrA-dependent lipid-A modifications were visible Salmonella and expressed lower amounts of pbgP transcript than the ugd mutant ."
534,535,1888.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"StpA repressed ompS1 expression in a mutant hns background H-NS negatively regulates ompS1 expression in both S. Typhimurium .
"
535,536,1888.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,StpA repressed ompS1 expression in a mutant hns background H-NS negatively regulates ompS1 expression in both S. Typhi .
536,537,1877.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To investigate the contribution of the ClpXP protease to the virulence of serovar Typhimurium we initially cloned the clpP operon from the pathogenic strain serovar Typhimurium x3306
"
537,538,1877.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To measure the contribution of the ClpXP protease in serovar Typhimurium virulence , we determined the abilities of serovar Typhimurium clpP : Cm , clpP : clpX .
"
538,539,1877.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To measure the contribution of the ClpXP protease in serovar Typhimurium virulence , we determined the abilities of serovar Typhimurium clpP : Cm , clpP : Km .
"
539,540,1687.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;unidentified,Salmonella;Salmonella enterica;enterica;unknown,Salmonella enterica;unidentified;Salmonella,"In Salmonella enterica , overexpression of the RstA protein lowered the levels of the alternative sigma factor RpoS by an unknown mechanism , which consequently downregulated transcription of three RpoS-controlled genes , narZ , spvA , and bapA , in stationary-phase ( 4 ) ."
540,541,475.txt,1,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimu,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimu-rium invasive phenotype .
"
541,542,475.txt,2,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of Salmonella enterica serovar Typhimurium invasive phenotype .
"
542,543,475.txt,3,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
543,544,475.txt,4,6,1,hybrid,hybrid,hybrid,"HilE has been shown via two-hybrid studies to interact with HilD , suggesting that HilE represses hilA by directly preventing HilD function .
"
544,545,475.txt,5,7,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
545,546,475.txt,6,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
546,547,475.txt,7,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"2003 HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
547,548,475.txt,8,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
548,549,475.txt,9,19,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
549,550,475.txt,10,20,1,hybrid,hybrid,hybrid,"We have shown by two-hybrid analysis that HilE interacts with HilD to repress hilA transcription .
"
550,551,475.txt,11,21,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
551,552,475.txt,12,22,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
552,553,475.txt,13,23,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
553,554,475.txt,14,24,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
554,555,475.txt,15,25,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
555,556,475.txt,16,26,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Baxter , M. A. , Fahlen , T. F. , Wilson , R. L. & Jones , B. D. HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
"
556,557,475.txt,17,27,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,HilE negatively regulates hilA transcription and expression of the Salmonella enterica serovar Typhimurium invasive phenotype .
557,558,460.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
558,559,306.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
559,560,1692.txt,1,1,1,Escherichia virus 186,coliphage 186,Escherichia virus 186,"All three phage genomes included a homologue of the tum gene of coliphage 186 , which encodes a LexA-repressed cI antirepressor .
"
560,561,1862.txt,1,2,1,unidentified,unknown,unidentified,"However , given that the Fur regulators can efficiently control feoB mRNA levels in response to different levels of iron , the reason remains unknown .
"
561,562,1862.txt,2,3,1,unidentified,unknown,unidentified,"However , given that the Fur regulators can efficiently control feoB mRNA levels in response to different levels of oxygen , the reason remains unknown ."
562,563,1651.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium virK is positively regulated by PhoP/PhoQ .
563,564,1645.txt,1,5,1,Salmonella,Salmonella,Salmonella,"Altogether , these results show that bapA , like adrA , is regulated by CsgD , which plays a central role in biofilm formation in Salmonella strains .
"
564,565,1645.txt,2,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to adrA promoter regions In S. Typhimurium the expression of adrA is positively regulated by the transcriptional regulator CsgD .
"
565,566,1645.txt,3,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to adrA promoter regions In S. Typhimurium the expression of adrA is positively regulated by the transcriptional regulator CsgD .
"
566,567,1645.txt,4,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to adrA promoter regions In S. Typhimurium the expression of csgBA is positively regulated by the transcriptional regulator CsgD .
"
567,568,1645.txt,5,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Results CsgD binds directly to the csgBA In S. Typhimurium the expression of adrA is positively regulated by the transcriptional regulator CsgD .
"
568,569,1645.txt,6,23,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene involved in bio-film formation , EPS production
"
569,570,1645.txt,7,24,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene involved in bio-film formation , transport production
"
570,571,1645.txt,8,25,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene involved in bio-film formation , virulence production
"
571,572,1645.txt,9,26,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene the upregulation of expression of lpfE genes
"
572,573,1645.txt,10,27,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene the upregulation of expression of fimA genes
"
573,574,1645.txt,11,28,1,Vibrio cholerae,Vibrio cholerae,Vibrio cholerae,"In contrast to the CsgD homolog in Vibrio cholerae , CsgD does not bind c-di-GMP as CsgD-mediated transcriptional activation of adrA is unaffected by c-di-GMP in-vitro .
"
574,575,1123.txt,1,2,1,Dipturus trachyderma,ray,Dipturus trachyderma,"In S. Tm , cib expression is negatively regulated in a Fur - locus for x-ray sensitivity A .
"
575,576,1679.txt,1,2,1,Salmonella,Salmonella,Salmonella,"As OmpR also controls the expression of the acid-induced virulence operon ssrAB , acid shock induction of ompR was examined to gain insight into how Salmonella links virulence with survival at extreme acid-pH .
"
576,577,1679.txt,2,4,1,Salmonella,Salmonella,Salmonella,"As OmpR also controls the expression of the acid-induced virulence operon ssrAB , acid shock induction of ompR was examined to gain insight into how Salmonella links virulence with survival at extreme acid-pH .
"
577,578,1679.txt,3,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR is also known to interact with the endogenous two-component regulator of SPI-2 , ssrAB in S. Typhimurium .
"
578,579,104.txt,1,1,1,unidentified,not shown,unidentified,"P-galac-tosidase activities were determined in a constitutively derepressed crp mutant background in order to quantitate promoter activities independent of regulation by CAMP-CRP -LRB- the results were unaffected by addition of CAMP-data not shown -RRB- .
"
579,580,104.txt,2,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Mechanism of the down-regulation of cAMP-receptor-protein by glucose in Escherichia coli : role of autoregulation of the crp gene .
"
580,581,104.txt,3,5,1,Salmonella,Salmonella,Salmonella,"One possible route would be regulation of crp by SdsR , for CRP-deficient Salmonella display altered susceptibility to antibiotic challenge ."
581,582,892.txt,1,3,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing H867Q mutations in ssrA ( Kenney unpublished ) .
"
582,583,892.txt,2,4,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing H867Q mutations in ssrA ( Walthers unpublished ) .
"
583,584,892.txt,3,5,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing D739A mutations in ssrA ( Kenney unpublished ) .
"
584,585,892.txt,4,6,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing D739A mutations in ssrA ( Walthers unpublished ) .
"
585,586,892.txt,5,7,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing H405Q mutations in ssrA ( Kenney unpublished ) .
"
586,587,892.txt,6,8,1,Salmonella,Salmonella,Salmonella,"To confirm that SsrA-dependent phosphorylation was not required for SsrB-mediated regulation of bio-films , we examined biofilm formation of Salmonella strains possessing H405Q mutations in ssrA ( Walthers unpublished ) .
"
587,588,879.txt,1,1,1,Mus sp.,mice,Mus sp.,"Mutants in pmrE or pmrF , two PmrA-activated loci , lack Ara4N modification to lipid-A and demonstrate reduced virulence when administered orally to mice ( 19 ) .
"
588,589,879.txt,2,3,3,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.,S. enterica;enterica;Typhimurium;mice,Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Additionally , previously identified PmrA-activated genes , such as pmrE and pmrF that affect Ara4N biosynthesis , have been shown to play a role in virulence of S. enterica serovar Typhimurium in mice [ 7,14 ] .
"
589,590,1321.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,Analysis of the transcriptome of the S. typhimurium slyA mutant revealed that many slyA-dependent genes are also controlled by the magnesium-sensing PhoP/PhoQ regulatory system .
590,591,845.txt,1,1,1,unidentified,not shown,unidentified,The unique pattern of expression of sseJ was also found not to be attributable to coordinate regulation by PhoPQ ( not shown ) .
591,592,689.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli flagellar motility is negatively regulated by RcsB binding to the RcsAB box of the promoter of the flagellar master regulator flhDC .
"
592,593,689.txt,2,10,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both S. enterica serovar Typhimurium .
"
593,594,689.txt,3,11,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both S. enterica serovar Typhimurium .
"
594,595,689.txt,4,12,1,Escherichia coli,E. coli,Escherichia coli,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both E. coli .
"
595,596,689.txt,5,13,1,Escherichia coli,E. coli,Escherichia coli,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both E. coli .
"
596,597,689.txt,6,14,1,Salmonella,Salmonella,Salmonella,"In Salmonella , however , RcsB-mediated regulation of the flagellar master operon flhDC has been described to be independent from RcsA .
"
597,598,1255.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar to the S. Typhimurium bfr are activated by Fe in a Fur-dependent manner , most likely via Fur-mediated repression of RyhB .
"
598,599,1255.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar to the S. Typhimurium bfr are activated by Fe in a Fur-dependent manner , most likely via Fur-mediated repression of the small RNA ."
599,600,2012.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"aspA , are activated by CRP-cAMP in E. coli ."
600,601,931.txt,1,2,1,unidentified,unknown,unidentified,"We placed the constitutive phoP gene under the control of an arabinose-inducible promoter and used this to determine the kinetics of activation of several pag genes as well as the modification of lipid-A with 2-hydroxymyristate , which can be added as a result of activation of an unknown PhoP-activated gene ( s ) .
"
601,602,931.txt,2,4,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
602,603,931.txt,3,7,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,SL1344;14028s,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"We determined that a ugtL pmrA double mutant was as susceptible to polymyxin B as a phoP mutant ( Fig. 3C ) , which suggests that both types of lipid-A modifications may operate at the same time and argues against the participation of other PhoP-regulated genes in resistance to polymxyin B. Thus , the increased polymyxin B susceptibility reported for mutants defective in the PhoP-activated mig-14 , virK and somA genes may be characteristic of the SL1344 genetic background used in those studies ( Brodsky et al. , 2002 ; Detweiler et al. , 2003 ) because derivatives of the 14028s strain deleted for the mig-14 gene or harbouring a MudJ transposon insertion in the virK gene retained wild-type resistance to both polymxyin B and magainin 2 ( our unpublished results ) .
"
603,604,931.txt,4,9,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Mus sp.,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;mice,Salmonella enterica;Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Inactivation of the phoP or levels of the PhoP-activated genes increased , phoQ genes renders Salmonella enterica serovar reached a peak that was lower than that obtained Typhimurium five orders of magnitude less when Salmonella was induced at 50 mM Mg2 + virulent for mice and unable to proliferate within ( except for the mgtA gene , which reached the phagocytic cells ( 4-6 ) .
"
604,605,931.txt,5,11,1,synthetic construct,primer,synthetic construct,"Our results from primer-extension demonstrate that transcriptions of the identified loci are activated by PhoP because the mRNA level of transcripts is reduced significantly in the phoP mutants grown in low-Mg2 conditions -LRB- Fig .
"
605,606,931.txt,6,34,1,Salmonella;Salmonella;Salmonella;Salmonella;Salmonella;Salmonella,S. enterica;enterica;S. enterica;enterica;S. enterica;enterica,Salmonella,"A S. enterica strain expressing PhoQ ( N67D , E112D ) from its normal chromosomal location induced the PhoP-activated phoP gene like the isogenic strain with the wild-type S. enterica phoQ gene ( Fig. 3A ) ; this result argues that these periplasmic residues are not essential for the response to acidic pH. The PhoQ proteins from both S. enterica and S. bongori harbor a histidine residue at position 157 .
"
606,607,931.txt,7,35,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,Transcription of the PhoP-activated phoP and mgtA genes was higher in wild-type S. enterica than in strains expressing the cadAB genes constitutively when the inducing condition was acidic pH ( Fig. 6C and D ) .
607,608,1080.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The presence of a putative sequence to which the cAMP-CRP complex binds in the E. coli fur promoter has been suggested on the basis of computational analysis .
"
608,609,1080.txt,2,2,1,Pasteurella multocida,Pasteurella multocida,Pasteurella multocida,"In agreement with this possibility , it has been recently demonstrated that the fur gene of Pasteurella multocida , is positively regulated by the cAMP-CRP complex ."
609,610,272.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"For example , in E. coli , IHF has been shown to regulate envZ operon ."
610,611,1902.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , another report indicated that the nucleoid protein H-NS , was a negative regulator of E. coli ompC .
"
611,612,1902.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"However , another report indicated that the nucleoid protein H-NS , was a negative regulator of E. coli ompC .
"
612,613,1916.txt,1,5,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] ."
613,614,1043.txt,1,4,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"To investigate whether fljB is regulated by FliA like other biphasic S. enterica mutants were affected by the osmotic environment , an ompR mutant was also prepared ."
614,615,2238.txt,1,2,1,unidentified plasmid,plasmid,unidentified plasmid,"SpvR positively regulates the plasmid-encoded spvABCD operon
"
615,616,2210.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías 2 , Guido C M .
"
616,617,2210.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella,S. Typhi;Typhi;S. enterica;enterica,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the expression of hlyE is under the control of the transcriptional regulatory protein PhoP , a master regulator of intracellular survival of S. enterica .
"
617,618,2210.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella,S. Typhi;Typhi;S. enterica;enterica,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the expression of hlyE is under the control of the transcriptional regulatory protein PhoP , a master regulator of intracellular survival of S. enterica ."
618,619,1719.txt,1,1,1,Terfezia albida,to 15,Terfezia albida,"Compared with the wild type , the expression levels of the pmrH gene in the mutants with reduced susceptibility were increased 2-to 15-fold , showing that the pmrA mutations changed the regulation of the PmrA-PmrB-dependent genes ."
619,620,1756.txt,1,2,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The ugtL gene is part of a Salmonella-specific gene cluster that includes the PhoP-activated pcgL gene ( 22 ) and the sifB gene , which is expressed in response to the low Mg2 conditions that normally activate the PhoP/PhoQ system ( 23 ) .
"
620,621,1756.txt,2,3,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The ugtL gene was first identified as part of a Salmonella-specific DNA region harbouring the PhoP-activated pcgL gene , which encodes a D-Ala-D-Ala dipeptidase ( Hilbert et al. , 1999 ) .
"
621,622,1756.txt,3,4,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] ."
622,623,2277.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In this work , we have studied how PhoPQ , HilE , together to regulate the S. Typhimurium SPI-1 transcriptional activator hilA ."
623,624,1795.txt,1,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Slauch , J.M. Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
624,625,1795.txt,2,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ikeda , J.S. , Janakiraman , A. , Kehres , D.G. , Maguire , M.E. , Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
625,626,1795.txt,3,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
626,627,1795.txt,4,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
627,628,1795.txt,5,6,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
628,629,1795.txt,6,8,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
"
629,630,1795.txt,7,9,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Slauch , J. M. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
630,631,1795.txt,8,10,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"M. E. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
631,632,1795.txt,9,11,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Maguire Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
632,633,1795.txt,10,12,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"D. G. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
633,634,1795.txt,11,13,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Kehres Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
634,635,1795.txt,12,14,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"A. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
635,636,1795.txt,13,15,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Janakiraman Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
636,637,1795.txt,14,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"J. S. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
637,638,1795.txt,15,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ikeda Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by MntR .
"
638,639,1795.txt,16,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by MntR .
639,640,567.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Mlc is involved in glucose induction of the ptsG gene encoding major glucose transporter in Escherichia coli .
640,641,1781.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the OmpR/EnvZ system is involved in the regulation of the ompC , where both OmpF are expressed as abundant outer-mem-brane proteins as in E. coli .
"
641,642,1781.txt,2,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the OmpR/EnvZ system is involved in the regulation of the ompC , where both OmpC are expressed as abundant outer-mem-brane proteins as in E. coli ."
642,643,1959.txt,1,2,1,Salmonella,Salmonella,Salmonella,"When the Salmonella PmrA PmrB is activated independently of PmrD , such as by exposure to Fe3 , the PmrA protein binds to the pmrD promoter .
"
643,644,1971.txt,1,1,1,Salmonella,Salmonella,Salmonella,Other regulators of SdiA did not contrib-ute to acrAB induction by indole in Salmonella .
644,645,1965.txt,1,4,1,Escherichia coli,E. coli,Escherichia coli,"Recently , reports on E. coli have also implicated integration host factor in the RpoS-dependent stationary-phase induction of osmY .
"
645,646,1965.txt,2,5,1,Escherichia coli,E. coli,Escherichia coli,"Recently , reports on E. coli have also implicated Lrp host factor in the RpoS-dependent stationary-phase induction of osmY ."
646,647,1232.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"PagP is an outer membrane palmitoyl transferase The S. typhimurium PhoP/PhoQ-regulated gene pagP is required for the synthesis of hepta-acylated lipid-A by the addition of palmitate to the 2 position N-linked 3-hydroxymyristate on the proximal glucosamine of lipid-A .
"
647,648,1226.txt,1,1,2,unidentified plasmid;Plasmid F,plasmid;plasmid F,Plasmid F;unidentified plasmid,"To further test the idea that LexA regulates the Fels-2 tum promoter , we placed this promoter region adjacent to the lacZ gene on plasmid F 128 .
"
648,649,1226.txt,2,8,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : sulA46 : : Spc insertions and lacked Gifsy-2 .
"
649,650,1226.txt,3,9,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : sulA46 : : Spc insertions and lacked Gifsy-1 .
"
650,651,1226.txt,4,10,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : sulA46 : : Spc insertions and lacked prophages Fels-2 .
"
651,652,1226.txt,5,11,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : Tn10 : : Spc insertions and lacked Gifsy-2 .
"
652,653,1226.txt,6,12,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : Tn10 : : Spc insertions and lacked Gifsy-1 .
"
653,654,1226.txt,7,13,1,Nitrolancea hollandica,Strain LB,Nitrolancea hollandica,"LexA-dependent control of a Fels-2 tum : : lac fusiona - lac strains Relevant genotype Strain LB mitomycin C LB TT23764 recA lexA 3.6 95.2 TT23765 lexA41 : Both strains contained the proB1567 : : Tn10 : : Spc insertions and lacked prophages Fels-2 .
"
654,655,1583.txt,1,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,SoxS regulates the expression of the S. Typhimurium ompW gene .
655,656,771.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Acquisition of the tviA gene by S. Typhi integrated the regulation of flagella into the RcsB regulons , such that flagellum expression is decreased following invasion of the intestinal mucosa , thereby avoiding detection by TLR5 present on the basolateral surface of CD11c dendritic cells in the lamina .
"
656,657,771.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Acquisition of the tviA gene by S. Typhi integrated the regulation of flagella into the RcsB regulons , such that flagellum expression is decreased following invasion of the intestinal mucosa , thereby avoiding detection by TLR5 present on the basolateral surface of enterocytes dendritic cells in the lamina .
"
657,658,759.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,Studies in E. coli indicate that MarA indirectly represses ompF .
658,659,995.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Partial transcriptional regulation of the lpxO gene by and PhoP in Salmonella .
"
659,660,1434.txt,1,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. typhimurium;typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Bile-mediated activation of the mar operon occurs independently of Rob Rob , a known activator of marRAB in E. coli , was examined for its role in bile activation of the mar operon in S. typhimurium .
"
660,661,76.txt,1,1,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"Thus , the ppGpp-dependent induction of RpoS-dependent genes , would be spoT dependent during P starvation and relA dependent during C starvation .
"
661,662,76.txt,2,2,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"Thus , the ppGpp-dependent induction of RpoS , would be spoT dependent during P starvation and relA dependent during C starvation ."
662,663,188.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhi 129-0238 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , osmY , in line with previous findings .
"
663,664,188.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhi 129-0238 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , ecnB , in line with previous findings .
"
664,665,188.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhi 129-0238 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , poxB , in line with previous findings .
"
665,666,188.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhimurium 14028 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , osmY , in line with previous findings .
"
666,667,188.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhimurium 14028 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , ecnB , in line with previous findings .
"
667,668,188.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhimurium 14028 also activated RpoSmediated stress responses , with upregulation of otsAB , spoVR , yeaG , katE , sodC , poxB , in line with previous findings ."
668,669,1408.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] ."
669,670,62.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both cadB promoters in SCV of macrophages .
"
670,671,62.txt,2,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both cadB promoters in the Salmonellacontaining vacuole of macrophages .
"
671,672,1385.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , SirA also directly activates the horizontally acquired regulatory genes hilC .
"
672,673,1178.txt,1,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"K. Nishino , M. Hayashi-Nishino , A. Yamaguchi , H-NS modulates multidrug resistance of Salmonella enterica serovar Typhimurium by repressing multi-drug efflux genes acrEF , Antimicrob ."
673,674,413.txt,1,1,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"To investigate whether z66 is regulated by FliA like other biphasic S. enterica mutants were affected by the osmotic environment , an ompR mutant was also prepared ."
674,675,349.txt,1,3,1,unidentified,unidentified,unidentified,"It is possible that some or all of the novel AraC-regulated genes have as-yet-unidentified connections to arabinose metabolism , although this seems especially unlikely for polB , which encodes a well-characterized DNA polymerase .
"
675,676,349.txt,2,5,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"We did not detect regulation of polB by AraC in S. enterica .
"
676,677,1811.txt,1,1,2,Salmonella;Mus sp.,Salmonella;mice,Mus sp.;Salmonella,We considered the possibility of the SsrB-repressed sciS being such a gene because its inactivation was reported to increase Salmonella virulence in BALB/c mice infected orally ( 4 ) .
677,678,1810.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Moreover , RcsB regulates yddX in E. coli ."
678,679,348.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Recent studies with Salmonella rpoS expression suggest that conditions encountered within host cells may partially resemble stationary-phase ( 20 ) ; however , the patterns of SlyA-regulated proteins were significantly different in stationary-phase and during infection of macrophages ."
679,680,406.txt,1,1,1,Salmonella,Salmonella,Salmonella,"To test the possibility that the effect of the tdcA mutation was increased under inducing conditions for PhoP-activated genes , Salmonella cultures were shifted from N minimal-medium containing a repressing Mg concentration ( 2 mM ) to that contain-2 + ing an activating Mg concentrations ( 50 μM ) ( Fig. 5B ) ."
680,681,1838.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3216 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI4-encoded genes , and repressed by SsrB .
"
681,682,1838.txt,2,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3216 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-associated genes , and repressed by SsrB .
"
682,683,1838.txt,3,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3216 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-encoded genes , and repressed by SsrB ."
683,684,412.txt,1,3,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , expression of sodB is activated by Fur via repression of the small RNA RyhB ."
684,685,1179.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"By placing invF encoding the secretion machinery under direct control of HilA , S. typhimurium ensures that secreted the secretion apparatus are produced simultaneously .
"
685,686,1179.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"By placing invF encoding the secretion machinery under direct control of HilA , S. typhimurium ensures that secreted effectors are produced simultaneously .
"
686,687,1637.txt,1,1,1,Salmonella,Salmonella,Salmonella,"A number of fusions to genes in known virulence regulons such as sodA ( manganese superoxide dismutase ) , pagJ ( a PhoPQ-activated gene ) and ssaE ( in Salmonella patho-genicity island 2 , SPI2 ) were identified ."
687,688,1145.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
688,689,823.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"So , it is possible that OmpR independently regulate the expression of tviA in S. typhi at osmotic-stress .
"
689,690,823.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Acquisition of the tviA gene by S. Typhi integrated the regulation of flagella into the OmpR regulons , such that flagellum expression is decreased following invasion of the intestinal mucosa , thereby avoiding detection by TLR5 present on the basolateral surface of CD11c dendritic cells in the lamina .
"
690,691,823.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Acquisition of the tviA gene by S. Typhi integrated the regulation of flagella into the OmpR regulons , such that flagellum expression is decreased following invasion of the intestinal mucosa , thereby avoiding detection by TLR5 present on the basolateral surface of enterocytes dendritic cells in the lamina .
"
691,692,63.txt,1,3,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
692,693,63.txt,2,4,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
693,694,63.txt,3,5,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
694,695,63.txt,4,6,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
695,696,63.txt,5,7,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
696,697,63.txt,6,8,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
697,698,63.txt,7,9,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
698,699,63.txt,8,10,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Fur activates the expression of Salmonella enterica pathogenicity island 1 by directly interacting with the hilD operator in-vivo .
"
699,700,63.txt,9,11,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,Fur activates the expression of Salmonella enterica pathogenicity Island 1 by directly interacting with the hilD operator in-vivo .
700,701,77.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3138 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI4-encoded genes , and repressed by SsrB .
"
701,702,77.txt,2,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3138 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-associated genes , and repressed by SsrB .
"
702,703,77.txt,3,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"STM3138 , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-encoded genes , and repressed by SsrB ."
703,704,189.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The rstA gene also seems to be a member of the PhoP regulon in Salmonella because a computational approach discovered the rstA promoter features shared with a group of PhoP-regulated promoters ( 35 , 36 ) .
"
704,705,2114.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Clarke , M.B. , and Sperandio , V. Transcriptional regulation of flhDC by FliA in enterohaemorrhagic Escherichia coli .
"
705,706,2114.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Clarke M , Sperandio V. Transcriptional regulation of flhDC by FliA in enterohaemorrhagic Escherichia coli .
"
706,707,2114.txt,3,4,1,Escherichia coli,Escherichia coli,Escherichia coli,Transcriptional regulation of flhDC by sigma ( FliA ) in enterohaemorrhagic Escherichia coli .
707,708,2128.txt,1,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium;mice;S. typhimurium;typhimurium,Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium,"In this investigation , we observed that ( i ) the in-vitro generation times of flgM mutant and wild-type strains of S. typhimurium were indistinguishable , as were the amounts of flagellin produced by the strains ; ( ii ) the 50 % lethal doses of fliA mutant and wild-type strains of S. typhimurium were similar in orally infected mice ; and ( iii ) inactivation of the FliA-regulated flagellin gene fliC in an flgM S. typhimurium mutant resulted in a virulent phenotype ."
708,709,1421.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutS RpoS global regulators of Escherichia coli K-12 .
"
709,710,1421.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutS RpoS global regulators of Escherichia coli K-12 .
"
710,711,1421.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutS RpoS global regulators of Escherichia coli K-12 .
"
711,712,1421.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,Negative regulation of mutS RpoS global regulators of Escherichia coli K-12 .
712,713,758.txt,1,1,1,Salmonella,Salmonella,Salmonella,"We report here that StpA are the main negative regulators of ompS1 expression in Salmonella .
"
713,714,758.txt,2,2,1,Salmonella,Salmonella,Salmonella,"We report here that StpA are the main positive regulators of ompS1 expression in Salmonella .
"
714,715,758.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Moreover it has been reported that StpA are the main negative regulators of ompS1 expression in Salmonella .
"
715,716,758.txt,4,4,1,Salmonella,Salmonella,Salmonella,Moreover it has been reported that StpA are the main positive regulators of ompS1 expression in Salmonella .
716,717,1582.txt,1,1,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rpoS .
"
717,718,1582.txt,2,2,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rcsC .
"
718,719,1582.txt,3,3,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : slyA .
"
719,720,1582.txt,4,4,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : phoP .
"
720,721,1582.txt,5,5,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ssrA/B .
"
721,722,1582.txt,6,6,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ompR .
"
722,723,1582.txt,7,7,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rpoS .
"
723,724,1582.txt,8,8,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rcsC .
"
724,725,1582.txt,9,9,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : slyA .
"
725,726,1582.txt,10,10,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : phoP .
"
726,727,1582.txt,11,11,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ssrA/B .
"
727,728,1582.txt,12,12,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of virK is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ompR .
"
728,729,1582.txt,13,14,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,SL1344;14028s,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"We determined that a ugtL pmrA double mutant was as susceptible to polymyxin B as a phoP mutant ( Fig. 3C ) , which suggests that both types of lipid-A modifications may operate at the same time and argues against the participation of other PhoP-regulated genes in resistance to polymxyin B. Thus , the increased polymyxin B susceptibility reported for mutants defective in the PhoP-activated mig-14 , virK and somA genes may be characteristic of the SL1344 genetic background used in those studies ( Brodsky et al. , 2002 ; Detweiler et al. , 2003 ) because derivatives of the 14028s strain deleted for the mig-14 gene or harbouring a MudJ transposon insertion in the virK gene retained wild-type resistance to both polymxyin B and magainin 2 ( our unpublished results ) .
"
729,730,1582.txt,14,15,1,Salmonella,Salmonella,Salmonella,"The PhoP-acti-vated mig-14 , mgtC , virK , and pagC promoters of Salmonella do not harbor a typical PhoP box in place of the 35 region , as found in archetypal PhoP-regulated promoters such as the mgtA promoter ( 13 ) .
"
730,731,770.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
731,732,1596.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
732,733,1596.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
733,734,1596.txt,3,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
734,735,1596.txt,4,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
735,736,1596.txt,5,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
736,737,1596.txt,6,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
737,738,1596.txt,7,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
738,739,1596.txt,8,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
739,740,1596.txt,9,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
740,741,1596.txt,10,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
741,742,1596.txt,11,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent .
"
742,743,1596.txt,12,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of lexA by all nine FQs is likely LexA dependent ."
743,744,957.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"The level of expression of tviA in the ompR mutant is nearly 10-fold lower than that in the wild type strain , suggesting that the expression of tviA in S. typhi is activated by OmpR at the early stage of osmotic-stress .
"
744,745,1233.txt,1,1,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"To determine whether the PhoP/PhoQ system is activated differently in S. enterica and S. bongori , we investigated expression of the PhoP-dependent phoP gene in bacteria grown under different PhoQ-inducing conditions using a pphoP-gfp fusion given that PhoP positively autoregulates its own expression ( Soncini et al. , 1995 ) ."
745,746,1555.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Downregulation of the Escherichia coli guaB promoter by upstream-bound cyclic-AMP-receptor-protein .
746,747,1964.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SirA Orthologs Affect both Motility 43210 The sirA gene of Salmonella enterica serovar Typhimurium encodes a two-component response regulator of the FixJ family .
"
747,748,228.txt,1,1,1,synthetic construct,primer,synthetic construct,"Our results from primer-extension demonstrate that transcriptions of the identified loci are activated by SlyA because the mRNA level of transcripts is reduced significantly in the slyA mutants grown in low-Mg2 conditions -LRB- Fig .
"
748,749,200.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,Lrp negatively regulates the porin gene ompC expression in E. coli
749,750,566.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
750,751,566.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
751,752,566.txt,3,5,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
752,753,566.txt,4,6,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
753,754,566.txt,5,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
754,755,566.txt,6,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
755,756,566.txt,7,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
756,757,566.txt,8,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
757,758,566.txt,9,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
758,759,566.txt,10,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
759,760,566.txt,11,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
760,761,566.txt,12,14,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
761,762,566.txt,13,15,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
762,763,566.txt,14,16,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
763,764,566.txt,15,17,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
764,765,566.txt,16,18,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
765,766,566.txt,17,19,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
766,767,566.txt,18,20,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
767,768,566.txt,19,21,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
768,769,566.txt,20,22,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected SsrB differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
769,770,566.txt,21,23,1,Dipturus trachyderma,ray,Dipturus trachyderma,"Unphosphorylated SsrB binds to the csgD regulatory region SsrB is X-ray crystallography suggested that phosphorylation was required for DNA binding .
"
770,771,599.txt,1,1,1,synthetic construct,Primer,synthetic construct,"Primer extension and DNase I footprinting identified multiple SsrB-regulated promoters within SPI-2 located upstream of ssaB , sseA , ssaG and ssaM ."
771,772,1757.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,UvrY of E. coli both control the csr system by directly activating the csrB gene .
772,773,1999.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Summary The Salmonella ugd gene is required for the incorporation of 4-aminoarabinose in the lipopolysaccharide and resistance to the antibiotic polymyxin B. Transcription of the ugd gene is induced by via the PmrA -- PmrB by low Mg2 + in a process .
"
773,774,1999.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Summary The Salmonella ugd gene is required for the incorporation of 4-aminoarabinose in the lipopolysaccharide and resistance to the antibiotic polymyxin B. Transcription of the ugd gene is induced by via the PmrA -- PmrB two-component system + in a process .
"
774,775,1999.txt,3,5,1,unidentified,not shown,unidentified,"On the other hand , neither Ca2 + nor Co2 + , K + , Ni2 + , Zn2 + , Mn2 + , Cu2 + , Ga3 + or Ru3 + ( at concentrations of up to 1 mM ) could induce PmrA-activated genes ( Wosten et al. , 2000 ) or kill the DpmrC ugd pmrG triple mutant ( data not shown ) .
"
775,776,1999.txt,4,10,1,Salmonella,Salmonella,Salmonella,"Synthesis of Ara4N and addition to the lipid-A is mediated by the Salmonella PmrA-activated genes pmrE ( also known as ugd ) and pmrHFIJKLM ( the pmrH operon , also known as the pbgP or arn operon ) ( Gunn et al. , 2000 ) .
"
776,777,1741.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , the tcfA was transformed into S. Typhimurium .
"
777,778,1741.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , the tcfA was transformed into their isogenic fur mutants .
"
778,779,1741.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , the tcfA was transformed into E. coli K-12 ."
779,780,1033.txt,1,1,1,Iris germanica,FLAG,Iris germanica,"Real-time PCR analysis revealed that upon RstA expression , transcriptional repression of the fhuF gene by the FLAG-tagged Fur protein was as efficient as in the strain with the wild-type Fur protein ( see Fig .
"
780,781,2274.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"E. coli strains were shown to express higher levels of flagellum genes and increased motility , possibly due to the inhibition of fliA promoters by DksA .
"
781,782,2274.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"E. coli strains were shown to express higher levels of che-motaxis genes and increased motility , possibly due to the inhibition of fliA promoters by DksA ."
782,783,570.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates Fis to control Salmonella Typhi hlyE expression Matías 2 , Guido C M .
"
783,784,570.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates Fis to control Salmonella Typhi hlyE expression Matías 1 , Alejandro A Hida .
"
784,785,570.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates Fis to control Salmonella Typhi hlyE expression Matías , Nicolás A Villa .
"
785,786,570.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates Fis to control Salmonella Typhi hlyE expression Matías , Leonardo M Rodrígu .
"
786,787,570.txt,5,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates Fis to control Salmonella Typhi hlyE expression Matías R Jofr .
"
787,788,570.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Altogether , these results suggest that Fis are able to repress the rpoS expression by direct binding , thereby regulating hlyE expression in S. Typhi .
"
788,789,570.txt,7,7,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates Fis to control Salmonella Typhi hlyE expression .
"
789,790,570.txt,8,8,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,RpoS integrates Fis to control Salmonella Typhi hlyE expression .
790,791,969.txt,1,1,1,Salmonella,Salmonella,Salmonella,"However , the sequence , the length , , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR .
"
791,792,969.txt,2,2,1,Salmonella,Salmonella,Salmonella,"However , the position of H-NS binding regions , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR .
"
792,793,969.txt,3,3,1,Salmonella,Salmonella,Salmonella,"However , the position of the McbR/YncC , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR ."
793,794,799.txt,1,4,1,Salmonella,Salmonella,Salmonella,"Synthesis of Ara4N and addition to the lipid-A is mediated by the Salmonella PmrA-activated genes pmrE ( also known as ugd ) and pmrHFIJKLM ( the pmrH operon , also known as the pbgP or arn operon ) ( Gunn et al. , 2000 ) ."
794,795,772.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Characterization of the S. Typhimurium marT-fidL Operon An in silico analysis of sequences from S. Typhimurium SPI-3 suggested that the main factor responsible for the phenotypic changes could be marT , since its protein product exhibits similarity to the putative DNA binding domain of the CadC transcriptional activator of E. coli K-12 ."
795,796,1580.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
796,797,1580.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
797,798,1580.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
798,799,1580.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
799,800,1580.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
800,801,1580.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
801,802,1580.txt,7,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
802,803,1580.txt,8,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
803,804,1580.txt,9,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
804,805,1580.txt,10,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
805,806,1580.txt,11,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent .
"
806,807,1580.txt,12,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of umuD by all nine FQs is likely LexA dependent ."
807,808,2089.txt,1,1,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
808,809,2089.txt,2,2,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
809,810,2089.txt,3,3,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
810,811,2089.txt,4,4,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Tobe T , Yoshikawa M , Mizuno T , Sasakawa C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS ."
811,812,982.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by Fnr ."
812,813,809.txt,1,1,1,Salmonella,Salmonella,Salmonella,d in Salmonella it has been shown that transcription of the hns gene -- which influences expression of the Spi-1-encoded invasion genes through the regulator HilD -- is repressed by the iron homeostasis regulator F
813,814,61.txt,1,3,1,Salmonella,Salmonella,Salmonella,"Consistently , results from different laboratories showed that SlyA regulates a subset of PhoP-dependent genes , including pagC , in Salmonella .
"
814,815,75.txt,1,1,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;typhimu,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Conversely , two glyoxyate shunt genes under the positive control of CsrA in E. coli , aceA , were induced twofold in the S. typhimu-rium csrA mutant ."
815,816,1392.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , YncC acts in concert with S to activate transcription at the yciG promoter .
"
816,817,174.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro SPI-1-inducing conditions .
"
817,818,174.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro high salt .
"
818,819,174.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro low O2 ."
819,820,1386.txt,1,3,2,Salmonella;unidentified plasmid;unidentified plasmid,Salmonella;plasmid;plasmid,Salmonella;unidentified plasmid,"Lrp-regulated genes in Salmonella include fimZ , for type 1 fimbria expression ( 67 ) ; ilvIH , for branched amino-acid biosynthesis ( 93 ) ; hisJ , for D-histidine utilization ( 44 ) ; traJ , for conjugal transfer of virulence plasmid pSLT ( 13 ) ; and pef , for pSLT plasmid-encoded fimbriae ( 74 ) ."
820,821,1621.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In addition , fimA expression from a fimA-lacZ reporter was increased in the absence of a functional FimW , in both a serovar Typhimurium background .
"
821,822,1621.txt,2,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In addition , fimA expression from a fimA-lacZ reporter was increased in the absence of a functional FimW , in both an E. coli Typhimurium background ."
822,823,362.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"ompR In E. coli , OmpR is clearly involved in the cellular response to osmotic-stress _ mediating the reciprocal osmotic control of ompF
"
823,824,362.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , Inouye , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
824,825,362.txt,3,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , S.L. , Bergstrom , L. , , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
825,826,362.txt,4,5,1,Escherichia coli,E. coli,Escherichia coli,"ompR In E. coli , OmpR is clearly involved in the cellular response to osmotic-stress _ mediating the reciprocal osmotic control of ompF
"
826,827,362.txt,5,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , Inouye , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
827,828,362.txt,6,8,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , S.L. , Bergstrom , L. , , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
828,829,362.txt,7,9,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , Inouye , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
829,830,362.txt,8,10,1,Escherichia coli,Escherichia coli,Escherichia coli,"Harlocker , S.L. , Bergstrom , L. , , M. Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
830,831,362.txt,9,11,1,Escherichia coli,Escherichia coli,Escherichia coli,"The OmpR protein of Escherichia coli binds to sites in the ompF promoter region in a hierarchical manner .
"
831,832,362.txt,10,12,1,Escherichia coli,Escherichia coli,Escherichia coli,"The OmpR protein of Escherichia coli binds to sites in the ompF promoter region in a hierarchical manner .
"
832,833,362.txt,11,13,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Expression of ompF genes in S. enterica serovar Typhi is under the control of OmpR .
"
833,834,362.txt,12,14,1,Escherichia coli,Escherichia coli,Escherichia coli,"Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
834,835,362.txt,13,15,1,Escherichia coli,Escherichia coli,Escherichia coli,"Tandem binding of six OmpR proteins to the ompF upstream regulatory sequence of Escherichia coli .
"
835,836,362.txt,14,16,1,Salmonella,Salmonella,Salmonella,"The two-component regulatory system OmpR = EnvZ regulates the porin genes ompF to osmolarity changes in Salmonella .
"
836,837,362.txt,15,18,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"These results support the model where the LtrR protein directly induces ompR expression , upon which OmpR binds to the regulatory region of ompF to induce their synthesis in S. Typhi IMSS-1 .
"
837,838,1190.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by cyclic-AMP-receptor-protein .
"
838,839,1190.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by CRP ."
839,840,404.txt,1,2,1,Salmonella,Salmonella,Salmonella,"PhoP also controls expression of Salmonella pathogenicity island-2 by binding to the ssrB promoter the 5 ′ - UTR of the spiR transcript .
"
840,841,1812.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
841,842,1185.txt,1,2,1,unidentified,unknown,unidentified,"The RpoS-regulated osmY gene encodes a periplasmic protein of unknown function that has been found to be induced by both osmotic and growth phase signals ( Yim and Villarejo , 1992 ) .
"
842,843,405.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] ."
843,844,1620.txt,1,3,1,Salmonella;Salmonella,Salmonella;Salmonella specific,Salmonella,"Salmonella specific STM1697 binds to FlhD , a component of FlhDC , the master transcription regulator of flagella biosynthesis .
"
844,845,1152.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The genetic regulation of gogB in Salmonella is influenced by SsrB , under SPI-2-inducing conditions
"
845,846,1152.txt,2,2,1,Salmonella,Salmonella,Salmonella,"The genetic regulation of gogB in Salmonella is influenced by SsrB , under SPI-2-inducing conditions"
846,847,149.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
847,848,1393.txt,1,2,1,Mus musculus,mouse,Mus musculus,"Activation of pmrC by PmrA suggests that the consequent pEtN modifications , are up-regulated during infection of the mouse
"
848,849,1393.txt,2,3,1,Mus musculus,mouse,Mus musculus,"Activation of pmrC by PmrA suggests that these loci , are up-regulated during infection of the mouse
"
849,850,1393.txt,3,4,1,Salmonella,Salmonella,Salmonella,"Although a non-cytotoxic form of polymyxin B -- termed polymyxin B nonapeptide ( Vaara and Vaara , 1983 ) -- could partially protect a Salmonella pmrA mutant from Fe ( III ) - mediated killing ( Chamnongpol et al. , 2002 ) inactivation of the PmrA-activated loci responsible for the lipid-A modification with 4-aminoarabinose ( i.e. pbgP ) or phosphoethanolamine ( i.e. pmrC ) did not render the organism susceptible to Fe ( III ) ( Lee et al. , 2004 ) .
"
850,851,1393.txt,4,8,1,Salmonella,Salmonella,Salmonella,"For example , activation of the PmrA/PmrB system ( 26 , 27 ) by growing Salmonella in media containing a high ( 10 mM ) Mg2 + concentration and then shifting it to media containing a low 2 + 3 + ( 50 mM ) Mg concentration and 100 mM Fe resulted in an increase in the mRNA levels corresponding to the PmrA-activated pbgP and pmrC genes , which peaked and then reached new steady-state levels ( fig .
"
851,852,607.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In the third multigene horizontal acquisition discovered ( Fig. 2 ) , an SsrB-regulated fusion ( srfH ) was found within a homologue of S. typhimurium type III secreted effectors sspH 1 ( P 10236 ) and sspH 2 ( P 10287 ) ."
852,853,161.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
853,854,48.txt,1,6,1,Escherichia coli,E. coli,Escherichia coli,"Previous studies have shown that CRP contribute to hlyE expression when E. coli is grown on a solid medium .
"
854,855,48.txt,2,16,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Escherichia coli;S. Typhi;Typhi,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"On the other hand , the transcriptional regulator Crp , previously described as an activator of hlyE transcription in Escherichia coli , is involved in transcriptional repression of hlyE in S. Typhi .
"
855,856,48.txt,3,17,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"The Crp regulator is involved in transcriptional repression of S. Typhi hlyE Crp is a transcriptional regulator previously reported to be an activator of hlyE transcription in E. coli .
"
856,857,48.txt,4,18,1,Escherichia coli,E. coli,Escherichia coli,CRP is a transcriptional regulator previously reported as an activator of the hlyE transcription in E. coli .
857,858,1350.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium;mice;S. typhimurium;typhimurium,Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium,"In this investigation , we observed that ( i ) the in-vitro generation times of flgM mutant and wild-type strains of S. typhimurium were indistinguishable , as were the amounts of flagellin produced by the strains ; ( ii ) the 50 % lethal doses of fliA mutant and wild-type strains of S. typhimurium were similar in orally infected mice ; and ( iii ) inactivation of the FliA-regulated flagellin gene fliC in an flgM S. typhimurium mutant resulted in a virulent phenotype ."
858,859,1436.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella-infected,Salmonella,srfH -- lacZ activity 20-fold _ mimicking the effect we observed with SsrB stimulation of srfH in Salmonella-infected macrophages
859,860,997.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
860,861,1595.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , Fig. 4D , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
861,862,1595.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , one , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
862,863,1595.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , the other , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP ."
863,864,767.txt,1,2,1,Salmonella,Salmonella,Salmonella,"When the Salmonella PmrA PmrB is activated independently of PmrD , such as by exposure to Fe3 , the PmrA protein represses pmrD transcription .
"
864,865,767.txt,2,3,2,Salmonella;Escherichia coli,Salmonella;E. coli,Escherichia coli;Salmonella,"We reasoned that if the PmrA-mediated repression of the Salmonella pmrD gene is designed to prevent the potentially detrimental production of PmrD protein , this negative feedback loop would be absent from E. coli because its PmrD protein is unable to activate the PmrA protein .
"
865,866,767.txt,3,4,1,Salmonella,Salmonella,Salmonella,"For example , the presence of a PmrA-binding site in the Salmonella pmrD promoter enables the PmrA protein to repress pmrD transcription
"
866,867,2088.txt,1,1,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,strain SL;SL1344;S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium,"MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of extracellular matrix formation in S. typhimurium .
"
867,868,2088.txt,2,2,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli,strain SL;SL1344;E. coli,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli;Sediminispirochaeta sinaica,"MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of extracellular matrix formation in E. coli .
"
868,869,2088.txt,3,3,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,strain SL;SL1344;S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium,"MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of aggregative morphology in S. typhimurium .
"
869,870,2088.txt,4,4,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli,strain SL;SL1344;E. coli,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli;Sediminispirochaeta sinaica,MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of aggregative morphology in E. coli .
870,871,798.txt,1,2,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) .
"
871,872,798.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"To verify if the S. Typhi siderophore salmochelin was regulated by Fur and/or by the sRNAs RfrA and RfrB , a transcriptional-fusion between the iroB promoter , the first gene of the iroBCDE operon , and the lacZ reporter gene was introduced to the different mutant strains .
"
872,873,798.txt,3,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,S. Typhi;Typhi;plasmid,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"To verify if the S. Typhi siderophore salmochelin was regulated by Fur and/or by the sRNAs RfrA and RfrB , a transcriptional-fusion between the iroB promoter , the first gene of the iroBCDE operon , and the lacZ reporter gene was constructed in plasmid pRS415 .
"
873,874,1224.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the S. typhimurium hilA promoter .
"
874,875,1224.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the S. typhimurium hilA promoter .
"
875,876,1224.txt,3,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members HilC , directly bind the Salmonella typhimurium hilA promoter .
"
876,877,1224.txt,4,6,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
877,878,1224.txt,5,7,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
878,879,1224.txt,6,8,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
879,880,1224.txt,7,9,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
880,881,1224.txt,8,10,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
881,882,1224.txt,9,11,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
882,883,1224.txt,10,12,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SCHECHTER L.M. , LEE C.A. : AraC/XylS family members , directly bind the Salmonella typhimurium hilA promoter .
"
883,884,1224.txt,11,13,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
884,885,1224.txt,12,14,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
885,886,1224.txt,13,15,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
886,887,1224.txt,14,16,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
887,888,1224.txt,15,17,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
888,889,1224.txt,16,18,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
889,890,1224.txt,17,19,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
890,891,1224.txt,18,20,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
891,892,1224.txt,19,21,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Schechter LM , Lee CA : AraC/XylS family members , directly bind the Salmonella typhimurium hilA promoter .
"
892,893,1224.txt,20,22,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella Typhimurium hilA promoter .
"
893,894,1224.txt,21,23,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella Typhimurium hilA promoter .
"
894,895,1224.txt,22,24,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
895,896,1224.txt,23,25,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
896,897,1224.txt,24,26,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella Typhimurium hilA promoter .
"
897,898,1224.txt,25,27,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella Typhimurium hilA promoter .
"
898,899,1224.txt,26,28,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
899,900,1224.txt,27,29,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
900,901,1224.txt,28,30,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhi;typhi-murium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Schechter , L. M. , and C. A. Lee , 2001 AraC/XylS family members , HilD , directly bind the Salmonella typhi-murium hilA promoter .
"
901,902,1224.txt,29,31,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhi;typhi-murium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Schechter , L. M. , and C. A. Lee , 2001 AraC/XylS family members , HilC , directly bind the Salmonella typhi-murium hilA promoter .
"
902,903,1224.txt,30,32,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
903,904,1224.txt,31,33,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
904,905,1224.txt,32,34,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
905,906,1224.txt,33,35,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter .
"
906,907,1224.txt,34,36,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella Typhimurium hilA promoter .
"
907,908,1224.txt,35,37,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella Typhimurium hilA promoter .
"
908,909,1224.txt,36,38,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhi;typhi-murium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhi-murium hilA promoter .
"
909,910,1224.txt,37,39,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhi;typhi-murium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhi-murium hilA promoter .
"
910,911,1224.txt,38,40,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Sal-monella;monella;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Sal-monella typhimurium hilA promoter .
"
911,912,1224.txt,39,41,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Sal-monella;monella;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Sal-monella typhimurium hilA promoter .
"
912,913,1224.txt,40,43,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilD , directly bind the Salmonella typhimurium hilA promoter .
"
913,914,1224.txt,41,44,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"AraC/XylS family members , HilC , directly bind the Salmonella typhimurium hilA promoter ."
914,915,968.txt,1,7,1,unidentified plasmid,plasmid,unidentified plasmid,"In addition , Lrp controls the expression of the virulence plasmid traJ gene .
"
915,916,968.txt,2,8,2,Salmonella;unidentified plasmid;unidentified plasmid,Salmonella;plasmid;plasmid,Salmonella;unidentified plasmid,"Lrp-regulated genes in Salmonella include fimZ , for type 1 fimbria expression ( 67 ) ; ilvIH , for branched amino-acid biosynthesis ( 93 ) ; hisJ , for D-histidine utilization ( 44 ) ; traJ , for conjugal transfer of virulence plasmid pSLT ( 13 ) ; and pef , for pSLT plasmid-encoded fimbriae ( 74 ) ."
916,917,1542.txt,1,2,1,Salmonella,Salmonella,Salmonella,"This motility requires the PhoP-activated mgtA , mgtC , and pagM genes , which specify a Mg2 + transporter , an inhibitor of Salmonella 
"
917,918,1542.txt,2,6,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to recruiting RNA polymerase .
"
918,919,1542.txt,3,7,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to the mgtC promoter .
"
919,920,1542.txt,4,8,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to the mgtC promoter .
"
920,921,1973.txt,1,1,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"When induced at a similar level , SlyA tends to form more dimers in the wild-type strain than in a relA spoT mutant , suggesting that ppGpp probably induces a conformational change in SlyA structure that preferentially forms a dimer ."
921,922,571.txt,1,1,1,unidentified,not shown,unidentified,"However , phoP mutations did not affect induction of data not shown , indicating that it operates independently of the PhoPQ regulon .
"
922,923,1768.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
923,924,1768.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
924,925,1768.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
925,926,1768.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
926,927,1768.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
927,928,1768.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
928,929,1768.txt,7,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
929,930,1768.txt,8,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
930,931,1768.txt,9,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
931,932,1768.txt,10,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
932,933,1768.txt,11,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent .
"
933,934,1768.txt,12,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of sbmC by all nine FQs is likely LexA dependent ."
934,935,2249.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
935,936,2249.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
936,937,1026.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;unidentified,Salmonella;Salmonella enterica;enterica;unknown,Salmonella enterica;unidentified;Salmonella,"In Salmonella enterica , overexpression of the RstA protein lowered the levels of the alternative sigma factor RpoS by an unknown mechanism , which consequently downregulated transcription of three RpoS-controlled genes , narZ , spvA , and bapA , in stationary-phase ( 4 ) ."
937,938,2271.txt,1,1,1,Vibrio vulnificus,Vibrio vulnificus,Vibrio vulnificus,"Lee , H.J. , Park , S.J. , Choi , S.H. , Lee , K.H. Vibrio vulnificus rpoS expression is repressed by direct binding of cAMP-CRP complex to its two promoter regions .
"
938,939,2271.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , CRP-cAMP represses rpoS transcription during logarithmic growth .
"
939,940,2271.txt,3,4,1,Vibrio vulnificus,Vibrio vulnificus,Vibrio vulnificus,"Previously , it has been reported that rpoS expression is repressed by the cAMP-CRP complex in Vibrio vulnificus .
"
940,941,2271.txt,4,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , CRP might repress hlyE expression by repressing rpoS in S. Typhi .
"
941,942,2271.txt,5,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Altogether , these results suggest that CRP are able to repress the rpoS expression by direct binding , thereby regulating hlyE expression in S. Typhi .
"
942,943,2271.txt,6,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Here , we present genetic evidence indicating that CRP exerts down-regulation of hlyE by repressing rpoS in S. Typhi .
"
943,944,2271.txt,7,9,1,Vibrio vulnificus,Vibrio vulnificus,Vibrio vulnificus,"On the other hand , it has been reported that rpoS expression is repressed by direct binding of CRP-cAMP to its promoter region in Vibrio vulnificus ."
944,945,1778.txt,1,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Calva E LeuO positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Calva E Negative osmoregulation of gene independently of OmpR in an hns background .
"
945,946,1778.txt,2,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Puente JL LeuO positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Puente JL Negative osmoregulation of gene independently of OmpR in an hns background ."
946,947,1022.txt,1,6,1,unidentified,not shown,unidentified,"The absence of transcriptional linkage between the RpoN and the PmrA regulons was corroborated because no significant differences were observed when the expression of PmrAcontrolled genes ( pmrI , pmrC , pmrF , and ugd ) was compared either in a RpoN or in a 1 DrpoN strain grown in LB ( exponential or stationary-phase ) or in a low-Mg N-21 minimal-medium , which are PhoP-and PmrA-inducing conditions ( Soncini & Groisman , 1996 ) ( Fig. 3a and data not shown ) .
"
947,948,1744.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Since the flhDC genes are regulated by the two-component system QseBC , a qseC mutant of S. Typhimurium was constructed to investigate the role of the QseC sensor kinase in norepinephrine-enhanced motility of S. Typhimurium .
"
948,949,1744.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Clarke , M.B. , and Sperandio , V. Transcriptional regulation of flhDC by QseBC in enterohaemorrhagic Escherichia coli .
"
949,950,1744.txt,3,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Clarke M , Sperandio V. Transcriptional regulation of flhDC by QseBC in enterohaemorrhagic Escherichia coli .
"
950,951,1744.txt,4,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Transcriptional regulation of flhDC by QseBC ( FliA ) in enterohaemorrhagic Escherichia coli .
"
951,952,1744.txt,5,7,1,Escherichia coli,Escherichia coli,Escherichia coli,Transcriptional regulation of flhDC by QseBC ( FliA ) in enterohaemorrhagic Escherichia coli .
952,953,1750.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of aniC in Salmonella typhimurium .
"
953,954,1750.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of aniC in Salmonella typhimurium ."
954,955,549.txt,1,1,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified,strain SL;SL1344;not shown,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified;Sediminispirochaeta sinaica,"twenty six compounds were re-tested for inhibition of expression of the RpoS-dependent spvR gene in Samonella strain SL1344 ( data not shown ) .
"
955,956,549.txt,2,2,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified,strain SL;SL1344;not shown,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified;Sediminispirochaeta sinaica,"twenty six compounds were re-tested for inhibition of growth of the RpoS-dependent spvR gene in Samonella strain SL1344 ( data not shown ) .
"
956,957,549.txt,3,3,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified,strain SL;SL1344;not shown,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified;Sediminispirochaeta sinaica,"One hundred were re-tested for inhibition of expression of the RpoS-dependent spvR gene in Samonella strain SL1344 ( data not shown ) .
"
957,958,549.txt,4,4,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified,strain SL;SL1344;not shown,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;unidentified;Sediminispirochaeta sinaica,One hundred were re-tested for inhibition of growth of the RpoS-dependent spvR gene in Samonella strain SL1344 ( data not shown ) .
958,959,575.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , the global regulator ss .
"
959,960,575.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , phosphate regulation .
"
960,961,575.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , PhoB .
"
961,962,575.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , osmoregulation .
"
962,963,575.txt,5,5,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , OmpR .
"
963,964,575.txt,6,6,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , s32 of heat-shock response .
"
964,965,575.txt,7,7,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses results from the activation of the s70-dependant uspA promoter of RpoS , RpoH ."
965,966,1787.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,LeuO is known to activate bglJ in E. coli while RcsB-BglJ heterodimers activate leuO transcription .
966,967,213.txt,1,1,1,Hypostomus robinii,tetA,Hypostomus robinii,"Influence of transcriptional activator RamA on expression of multidrug efflux pump Ac interdomain loop region of the tetA tetracycline resistance gene increase efflux of glycylcyclines .
"
967,968,213.txt,2,2,1,Hypostomus robinii,tetA,Hypostomus robinii,Influence of transcriptional activator RamA on expression of multidrug efflux pump Ac interdomain loop region of the tetA tetracycline resistance gene increase efflux of minocycline .
968,969,2067.txt,1,1,3,Iris germanica;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Iris germanica;Iris germanica;unidentified,FLAG;14028s;flag;flag;unknown,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;unidentified;Iris germanica,"% surviva A B C 100 10 1 r r to to gtL c c u ve ve p e L tL + + + typ gt ug u-ild w pe P y o-t h ld p w i L e oP rA gtL h m u p p A r m p gt u yp-t ld w i A Mg2 + L L L H b-galactosidase activity YqjA-FLAG w ild-type 14028s p h o yqjA-flag P B yqjA w 10µM Mg2 + 2 + - flag ; phoP 10mM Mg ild-type 5 0 40 p Discussion The PhoP -- PhoQ regulatory system controls resistance to a variety of structurally different antimicrobial peptides ( Groisman et al. , 1992 ) , but the identity of the PhoP-regulated determinants mediating peptide resistance has remained largely unknown .
"
969,970,1220.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Olsén , A. , Arnqvist , A. , Normar , S. The RpoS sigma factor relieves H-NS-mediated transcriptional repression of csgA , the subunit gene of fibronectin-binding curli in Escherichia coli .
"
970,971,1220.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Olsén , A. , Arnqvist , A. , Hammar , M. , Sukupolvi , S. , S. The RpoS sigma factor relieves H-NS-mediated transcriptional repression of csgA , the subunit gene of fibronectin-binding curli in Escherichia coli .
"
971,972,1220.txt,3,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"A. Olsen , A. Arnqvist , M. Hammar , S. Sukupolvi , S. Normark , The RpoS sigma factor relieves H-NS-mediated transcriptional repression of csgA , the subunit gene of fibronectin-binding curli in Escherichia coli , Mol .
"
972,973,978.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilD have independent effects on expression of sipC in S. typhimurium .
"
973,974,978.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilD have independent effects on expression of sipA in S. typhimurium .
"
974,975,978.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilD have independent effects on expression of invF in S. typhimurium .
"
975,976,978.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilA have independent effects on expression of sipC in S. typhimurium .
"
976,977,978.txt,5,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilA have independent effects on expression of sipA in S. typhimurium .
"
977,978,978.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A subset of SPI1 genes is induced by HilD overexpression in the absence of hilA Our results suggested that HilA have independent effects on expression of invF in S. typhimurium .
"
978,979,978.txt,7,14,1,Terfezia pini,to 40,Terfezia pini,"Production of HilC induced expression of hilA ~ 120-fold , while HilD induced expression of hilA 30-to 40-fold , similar to previously reported values .
"
979,980,978.txt,8,18,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella;enterica,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Olekhnovich , I.N. , and Kadner , R.J. Contribution of the RpoA C-terminal domain to stimulation of the Salmo-nella enterica hilA promoter by HilD .
"
980,981,978.txt,9,19,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella;enterica,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Olekhnovich , I.N. , and Kadner , R.J. Contribution of the RpoA C-terminal domain to stimulation of the Salmo-nella enterica hilA promoter by HilD .
"
981,982,978.txt,10,21,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilD .
"
982,983,978.txt,11,22,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilD .
"
983,984,978.txt,12,31,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilD .
"
984,985,978.txt,13,32,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilD .
"
985,986,978.txt,14,38,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilD are central activators of hilA expression ( Ellermeier et al. , 2005 ; 2001 ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
986,987,978.txt,15,39,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilD are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lee ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
987,988,978.txt,16,40,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilD are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lucas ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
988,989,978.txt,17,53,1,unidentified,unknown,unidentified,"Briefly , ArcB responds to low oxygen conditions when bacteria undergoes autophosphorylation , following which the phosphate group is transferred to ArcA ; phosphorylated ArcA-P activates loiA gene expression indirectly through unknown regulator ; LoiA activates HilD directly through binding the hilD promoter ; HilD then activates hilA SPI-1 genes .
"
989,990,978.txt,18,54,1,unidentified,unknown,unidentified,"Briefly , ArcB responds to low oxygen conditions when bacteria undergoes autophosphorylation , following which the phosphate group is transferred to ArcA ; phosphorylated ArcA activates loiA gene expression indirectly through unknown regulator ; LoiA activates HilD directly through binding the hilD promoter ; HilD then activates hilA SPI-1 genes .
"
990,991,978.txt,19,55,1,unidentified,unknown,unidentified,"Briefly , ArcB responds to low oxygen conditions when bacteria reach the distal ileum ; phosphorylated ArcA-P activates loiA gene expression indirectly through unknown regulator ; LoiA activates HilD directly through binding the hilD promoter ; HilD then activates hilA SPI-1 genes .
"
991,992,978.txt,20,56,1,unidentified,unknown,unidentified,"Briefly , ArcB responds to low oxygen conditions when bacteria reach the distal ileum ; phosphorylated ArcA activates loiA gene expression indirectly through unknown regulator ; LoiA activates HilD directly through binding the hilD promoter ; HilD then activates hilA SPI-1 genes .
"
992,993,1552.txt,1,1,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A role for FIS in the regulation of S. enterica topA expression has not been previously detected
"
993,994,1552.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"FIS does directly regulate the E. coli topA promoter
"
994,995,1585.txt,1,1,2,Cornu aspersum;Cantareus apertus,helix;helix,Cornu aspersum;Cantareus apertus,"The MarR-type regulator RovA , a dimeric winged-helix DNA-binding protein of the SlyA/Hor/Rap family activates invA transcription in response to temperature ."
995,996,1591.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Hantke , K. Dual repression by Fe - Fur - MntR of the mntH gene , encoding an NRAMP-like Mn transporter in Escherichia coli .
"
996,997,2107.txt,1,1,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;unidentified expression vector,S. Typhi;Typhi;S. Typhi;Typhi;GIFU10007;expression vector,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;unidentified expression vector;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR can Bind the Promoter Fragment of Putative Operon yehUTS in S. Typhi The gene ompR of S. Typhi GIFU10007 was successfully cloned into XhoI of the expression vector pET22b .
"
997,998,2107.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007,S. Typhi;Typhi;S. Typhi;Typhi;GIFU10007,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Salmonella enterica subsp. enterica serovar Typhimurium,OmpR can Bind the Promoter Fragment of Putative Operon yehUTS in S. Typhi The gene ompR of S. Typhi GIFU10007 was successfully cloned into the cloning sites NdeI .
998,999,1368.txt,1,1,3,unidentified plasmid;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;S. enterica;enterica;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Briefly , pNL3 is a pBR322-derived reporter plasmid in which the PhoP-activated phoN promoter region of S. enterica serovar Typhimurium is fused to the lacZ structural gene .
"
999,1000,1368.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Chryseobacterium gallinarum,S. typhimurium;typhimurium;strain ( 100,Chryseobacterium gallinarum;Salmonella enterica subsp. enterica serovar Typhimurium,"The overlay was prepared in a Falcon tube in conditions of sterility by mixing sterile LB-medium ( 20 mL ) containing agar ( 0.12 g ) at ca. 42 °C , with 20 mg/mL solution of X-gal ( 333 μL ) , 50 μg/mL solution of kanamycin ( 20 μL ) and 1 × 10 CFU/mL 8 of the S. typhimurium strain ( 100 μL ) that harbours reporter transcriptional lacZ-fusions to either the archetypal PhoP-activated gene virK ( 14028 virK : : lacZ ) or to a gene activated by the OmpR -- EnvZ two-compo-nent system , tppB ( 14028 tppB : : MudI ) ."
1000,1001,64.txt,1,1,1,Salmonella,Salmonella,Salmonella,"A number of fusions to genes in known virulence regulons such as sodA ( manganese superoxide dismutase ) , pagJ ( a PhoPQ-activated gene ) and ssaE ( in Salmonella patho-genicity island 2 , SPI2 ) were identified ."
1001,1002,830.txt,1,2,1,Salmonella,Salmonella,Salmonella,"We report here that LeuO are the main negative regulators of ompS1 expression in Salmonella .
"
1002,1003,830.txt,2,3,1,Salmonella,Salmonella,Salmonella,"We report here that LeuO are the main positive regulators of ompS1 expression in Salmonella .
"
1003,1004,830.txt,3,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,S. Typhi;Typhi;plasmid,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"To test whether LeuO regulated the ompS1 gene , LeuO was expressed in S. Typhi wild type from plasmid pFMTrcleuO-50
"
1004,1005,830.txt,4,17,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"The observation that both ompS1 were regulated by LeuO at different levels of induction opens the possibility that there is a regulon in S. enterica .
"
1005,1006,830.txt,5,18,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Salmonella;Typhi;plasmid;Salmonella;Typhi;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Bacterial strains IMSS-II ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrc12 ) and IMSS-III ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrcleuO-50 ) were independently transformed with fusions of each of the LeuO-regulated genes ( pKK232-9 [ STY3070 ] , pKK232-9 [ assT ] , pKK232-9 [ ompS1 ] , pKK232-9 [ ompS2 ] , pKK232-9 [ tpx ] , pKK232-9 [ ompX ] , and pKK232-9 [ STY1978 ] ) to generate individual strains containing the LeuO regulator , as well as the promoter region of the LeuO-dependent gene .
"
1006,1007,830.txt,6,21,1,Salmonella,Salmonella,Salmonella,"Moreover it has been reported that LeuO are the main negative regulators of ompS1 expression in Salmonella .
"
1007,1008,830.txt,7,22,1,Salmonella,Salmonella,Salmonella,Moreover it has been reported that LeuO are the main positive regulators of ompS1 expression in Salmonella .
1008,1009,1432.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1009,1010,58.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"With regard to transcriptional regulation of thefru operon , the results summarized here and previously , as well as unpublished results -LRB- Cao and Saier -RRB- suggest that the fru regulon in S. typhimurium is complex ; that it may consist of at least three or four operons , one encoding the IIIFm-FPr protein , fructose-i-phosphate kinase , and IIFru , a second encoding a fructose-inducible enzyme I-like protein , a third encoding the fructose repressor , FruR , and possibly a fourth encoding a cryptic 11Fru -LRB- Cao and Saier , unpublished results -RRB- ; that it is unique in its response to the loss of the cyclic AMP-CRP complex as a result of mutations in the cya , crp , or pts gene ; that it may be regulated at the transcriptional level by two or more distinct mechanisms -LRB- possibly involving two distinct inducers , fructose-i-phos-phate and fructose -RRB- which together account for induction by fructose , or that low-level expression of cryptic fru genes accounts for the anomalous fru operon induction behavior ; and that the proteins of the fructose-specific PTS may play a direct or indirect role in transcriptional regulation .
"
1010,1011,58.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"With regard to transcriptional regulation of thefru operon , the results summarized here and previously , as well as unpublished results -LRB- Cao and Saier -RRB- suggest that the fru regulon in S. typhimurium is complex ; that it may consist of at least three or four operons , one encoding the IIIFm-FPr protein , fructose-i-phosphate kinase , and IIFru , a second encoding a fructose-inducible enzyme I-like protein , a third encoding the fructose repressor , FruR , and possibly a fourth encoding a cryptic 11Fru -LRB- Cao and Saier , unpublished results -RRB- ; that it is unique in its response to the loss of the cyclic AMP-CRP complex as a result of mutations in the cya , crp , or pts gene ; that it may be regulated at the transcriptional level by two or more distinct mechanisms -LRB- possibly involving two distinct inducers , fructose-i-phos-phate and fructose -RRB- which together account for induction by fructose , or that low-level expression of cryptic fru genes accounts for the anomalous fru operon induction behavior ; and that the proteins of the fructose-specific PTS may play a direct or indirect role in transcriptional regulation ."
1011,1012,1340.txt,1,5,1,unidentified plasmid,plasmid,unidentified plasmid,"In this manner , we were able to isolate clones of pocR in which expression of pocR was not increased by transcription from Plac on the plasmid , since high-level expression of pocR by Plac led to constitutive -LRB- 1,2-PDL-indepen-dent -RRB- PocR activity in-vivo ."
1012,1013,165.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Furthermore , addition of NO to E. coli cultures leads to upregulation of norV via transcriptional activation by the regulator NorR .
"
1013,1014,165.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"The NorR protein of Escherichia coli activates expression of the Flavorubredoxin gene norV in response to reactive-nitrogen-species .
"
1014,1015,165.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,The NorR protein of Escherichia coli activates expression of the flavorubredoxin gene norV in response to reactive-nitrogen-species .
1015,1016,603.txt,1,1,1,unidentified,unidentified,unidentified,"Mutations in ams , hha and a previously unidentified PhoP-activated gene ( pag ) lead to increased hilA expression ( Fahlen et al. , 2000 , 2001 ) ."
1016,1017,171.txt,1,1,4,Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli;Felis catus;Clostridium aminobutyricum,Typhimurium;E. coli;cat;Clostridium aminobutyricum,Felis catus;Clostridium aminobutyricum;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Apart from the PhoP/PhoQ-regulated ugd ( pagA ) gene , which in serovar Typhimurium has been demonstrated to be transcriptionally active inside macrophages and to be necessary for growth in a low-magnesium environment ( 1 , 19 , 20 ) , two genes were identified with homology to the E. coli tdh gene and the cat2 gene in Clostridium aminobutyricum ."
1017,1018,1618.txt,1,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"the original S. Typhi Tn-10 insertion mutant where the transposon insertion allowed us to identify LeuO as a positive regulator of ompS2
"
1018,1019,1618.txt,2,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"the original S. Typhi Tn-10 insertion mutant where the transposon insertion allowed us to identify LeuO as a positive regulator of ompS2
"
1019,1020,1618.txt,3,9,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"The observation that both ompS2 were regulated by LeuO at different levels of induction opens the possibility that there is a regulon in S. enterica .
"
1020,1021,1618.txt,4,10,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Salmonella;Typhi;plasmid;Salmonella;Typhi;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Bacterial strains IMSS-II ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrc12 ) and IMSS-III ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrcleuO-50 ) were independently transformed with fusions of each of the LeuO-regulated genes ( pKK232-9 [ STY3070 ] , pKK232-9 [ assT ] , pKK232-9 [ ompS1 ] , pKK232-9 [ ompS2 ] , pKK232-9 [ tpx ] , pKK232-9 [ ompX ] , and pKK232-9 [ STY1978 ] ) to generate individual strains containing the LeuO regulator , as well as the promoter region of the LeuO-dependent gene .
"
1021,1022,1142.txt,1,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Altogether , these results suggest that Fis are able to repress the rpoS expression by direct binding , thereby regulating hlyE expression in S. Typhi .
"
1022,1023,1817.txt,1,5,1,Escherichia coli,E. coli,Escherichia coli,"other studies _ performed in E. coli where rob was shown to be negatively regulated by both SoxS by a direct interaction with its promoter region
"
1023,1024,429.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Moreover , the operons of yeaR-yoaG , previously shown to be regulated by NsrR in Salmonella , were found to be induced 678.1 - , 314.5 - , 130.2 - , 123.7-and 15.9-fold , respectively , by the absence of NsrR .
"
1024,1025,429.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Moreover , the operons of yeaR-yoaG , previously shown to be regulated by NsrR in Escherichia coli - , 123.7-and 15.9-fold , respectively , by the absence of NsrR .
"
1025,1026,1195.txt,1,1,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : slyA .
"
1026,1027,1195.txt,2,2,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : slyA .
"
1027,1028,1195.txt,3,3,1,unidentified plasmid,plasmid,unidentified plasmid,"The PhoP Protein Binds to the Promoter of the slyA Gene -- Investigation of PhoP-controlled slyA transcription has been carried out using plasmid-borne constructs harboring the slyA promoter region ( 20 ) .
"
1028,1029,1195.txt,4,4,1,unidentified plasmid,plasmid,unidentified plasmid,"The PhoP Protein Binds to the Promoter of the slyA Gene -- Investigation of PhoP-controlled slyA transcription has been carried out using plasmid-borne constructs harboring the slyA promoter region ( 20 ) .
"
1029,1030,1195.txt,5,6,1,unidentified,unknown,unidentified,"Although the mechanism remains unknown , it has been suggested that the PhoP protein regulates slyA expression indirectly because a PhoP box could not be identified in the slyA promoter region .
"
1030,1031,367.txt,1,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Interestingly , when S. Typhimurium is grown to late stationary-phase in LB-medium , HilD directly induces the expression of the ssrAB operon .
"
1031,1032,1181.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"As the RstA binding site is identical apart from a single nucleotide , the RstA ortholog STM1475 might directly control csgD transcription in S. Typhimurium ."
1032,1033,414.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,locus STM2628 whose hypothetical product shows similarity to the DicA repressor of the E. coli K-12 cryptic Qin prophage
1033,1034,366.txt,1,2,1,Salmonella,Salmonella,Salmonella,"We propose that the RstA-induced feoB expression allows Salmonella cells to take up more Fe ( II ) , thereby promoting Fur activity [ as evidenced by Fur-Fe ( II ) levels ] based on the following .
"
1034,1035,1816.txt,1,2,1,Bacillus subtilis,Bacillus subtilis,Bacillus subtilis,"MntR , plays a major role in regulating mntH expression in Bacillus subtilis .
"
1035,1036,1816.txt,2,3,1,Salmonella,Salmonella,Salmonella,"Expression of Salmonella mntH gene is regulated by both MntR-dependent and-independent mechanisms .
"
1036,1037,1143.txt,1,3,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"HilD induces the expression of gtgE , in the absence of other Salmonella-specific regulators .
"
1037,1038,1143.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD positively regulates gtgE in S. Typhimurium .
"
1038,1039,1143.txt,3,6,1,Escherichia coli,E. coli,Escherichia coli,"HilD induces the expression of gtgE , in E. coli MC4100 ."
1039,1040,1631.txt,1,1,2,unidentified plasmid;Prairie vole hantavirus,plasmid;pVV,Prairie vole hantavirus;unidentified plasmid,"We used a low copy plasmid , pVV448 , in which the HilA-activated invF promoter region ( -319 bp to +128 bp , relative to the HilA-activated +1 ) is cloned upstream of lacZ .
"
1040,1041,1631.txt,2,2,1,Prairie vole hantavirus,pVV,Prairie vole hantavirus,"As expected , HilA activates lacZ expression from pVV448 up to 50-fold ."
1041,1042,616.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Nou , X. , Braaten , B. , Kaltenbach , L. , regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of aniC in Salmonella typhimurium .
"
1042,1043,616.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Nou , X. , Braaten , B. , Kaltenbach , L. , regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of aniC in Salmonella typhimurium .
"
1043,1044,616.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of aniC in Salmonella typhimurium .
"
1044,1045,616.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of aniC in Salmonella typhimurium ."
1045,1046,1433.txt,1,1,1,Salmonella,Salmonella,Salmonella,"of the RcsC/YojN/RcsB regulatory system due to the rcsC11 allele in the sensor RcsC renders Salmonella that inactivation of the response regulator gene rcsB restores full virulence to the rcsC11 mutant , indicative that its attenuated phenotype results from aberrant expression of RcsB-regulated genes .
"
1046,1047,1433.txt,2,2,1,unidentified plasmid,plasmid,unidentified plasmid,"rcsB overexpression represses PrcsDB activity RESULTS RcsB overproduction represses rcsD transcription We have previously demonstrated that rcsB overexpression from plasmid prcsB results in strong repression of rcsD gene expression , while its own expression is not affected ."
1047,1048,819.txt,1,1,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella,Salmonella;Typhi;Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías and Juan A Fuentes1 ,3 * Abstract Background : SPI-18 is a pathogenicity island found in some Salmonella enterica serovars , including S. T .
"
1048,1049,819.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías 1 , Alejandro A Hida .
"
1049,1050,819.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías , Nicolás A Villa .
"
1050,1051,819.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías , Leonardo M Rodrígu .
"
1051,1052,819.txt,5,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"R E S E A R C H A R T I C L E Open Access RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression Matías R Jofr .
"
1052,1053,819.txt,6,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates global regulators , to control S. Typhi hlyE expression .
"
1053,1054,819.txt,7,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates multiple environmental signals , to control S. Typhi hlyE expression .
"
1054,1055,819.txt,8,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates PhoP signaling pathways , to control S. Typhi hlyE expression .
"
1055,1056,819.txt,9,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates Fis , to control S. Typhi hlyE expression .
"
1056,1057,819.txt,10,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates CRP , to control S. Typhi hlyE expression .
"
1057,1058,819.txt,11,11,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression .
"
1058,1059,819.txt,12,12,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,RpoS integrates PhoP signaling pathways to control Salmonella Typhi hlyE expression .
1059,1060,59.txt,1,9,1,Salmonella,Enteritidis,Salmonella,a model in which Fnr control the expression of lpxO in S. Enteritidis to achieve a fine-tuning of lipid-A hydroxylation levels
1060,1061,71.txt,1,4,1,synthetic construct,primer,synthetic construct,"Previous results from primer-extension analysis suggest that regulation of ssrB by OmpR is distinct .
"
1061,1062,71.txt,2,5,1,synthetic construct,primer,synthetic construct,"Previous results from primer-extension analysis suggest that regulation of ssrB by OmpR is uncoupled .
"
1062,1063,71.txt,3,8,1,Salmonella,Salmonella,Salmonella,"previous work in Salmonella has shown that phosphorylated OmpR can bind to either ssrB within SPI-2
"
1063,1064,1369.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Also , since FimZ regulates S. typhimurium fimA expression , we constructed a fimZ-lacZ fusion to investigate the expression of this important regulator of the fimbrial system .
"
1064,1065,1369.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Also , since FimZ regulates S. typhimurium fimA expression , we constructed a fimZ-lacZ fusion to investigate the expression of this important regulator of the fimbrial system .
"
1065,1066,1369.txt,3,7,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"FimZ binds the Salmonella typhimurium fimA promoter .
"
1066,1067,1369.txt,4,8,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;typhimu,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"FimZ binds the Salmonella typhimu-rium fimA promoter .
"
1067,1068,1369.txt,5,10,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimu,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,FimZ binds the Salmonella Typhimu-rium fimA promoter .
1068,1069,762.txt,1,1,3,Salmonella;Salmonella;Escherichia coli;Erwinia amylovora;Salmonella,S. enterica;enterica;E. coli;Erwinia amylovora;Salmonella,Escherichia coli;Salmonella;Erwinia amylovora,"Microarray analyses of rcsB-and/or rcsB rcsA-dependent changes in genes expression in S. enterica , E. coli and Erwinia amylovora identified dozens of genes that are directly or indirectly controlled by these regulators ( Wang et al. , 2007 ; 2012 ) To determine which members of the Rcs regulon contribute to persistence within tomatoes , we chose a two-pronged approach : we first defined a set of likely direct RcsAB targets , and then que-ried results of a recently completed high-throughput screen of transposon-tagged Salmonella mutants ( de Moraes et al. , submitted ) to determine which of the RcsAB-regulated genes contribute to the reduced fitness of the mutants ."
1069,1070,1584.txt,1,1,4,Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli;Felis catus;Clostridium aminobutyricum,Typhimurium;E. coli;cat;Clostridium aminobutyricum,Felis catus;Clostridium aminobutyricum;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Apart from the PhoP/PhoQ-regulated ugd ( pagA ) gene , which in serovar Typhimurium has been demonstrated to be transcriptionally active inside macrophages and to be necessary for growth in a low-magnesium environment ( 1 , 19 , 20 ) , two genes were identified with homology to the E. coli tdh gene and the cat2 gene in Clostridium aminobutyricum ."
1070,1071,776.txt,1,1,1,Salmonella,Salmonella,Salmonella,ZupT determines changes in intracellular zinc concentration of Lack Previous studies have shown that zinT are coregulated by Zur and that ZinT accumulation is strongly induced by EDTA and repressed by zinc .23 The addition of 0.5 μM ZnSO4 to the culture medium causes the complete abrogation of ZinT accumulation in a wild type Salmonella strai
1071,1072,986.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"Among kanamycin-resistant tranductants , the presence of the lexA ( Ind ) mutation was confirmed through β-galactosidase assay after introduction of the pGE108 plasmid ( Table 2 ) which contains a LexA-regulated cea ∷ lacZ fusion ( Salles et al. , 1987 ) .
"
1072,1073,986.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"The LexA-based genetic system detects in-vivo protein dimerization in E. coli SU101 , in which the reporter fusion sulA : : lacZ is controlled by the LexA dimer -LRB- dimerization is essential for operator recognition -RRB- ."
1073,1074,979.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , BasR binds directly to the csgD promoter to activate transcription ."
1074,1075,1553.txt,1,1,3,unidentified plasmid;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;S. enterica;enterica;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Briefly , pNL3 is a pBR322-derived reporter plasmid in which the PhoP-activated phoN promoter region of S. enterica serovar Typhimurium is fused to the lacZ structural gene .
"
1075,1076,1553.txt,2,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] .
"
1076,1077,1547.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Even though Rho has been proposed to play an indirect role in gene control by riboswitches [ i.e. , by prematurely terminating transcription of those mRNAs , our results demonstrate that the E. coli ribB riboswitch operates in a distinct manner ."
1077,1078,1221.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,It was later demonstrated that E. coli SdiA activates ftsQ in response to AHL .
1078,1079,2066.txt,1,1,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1079,1080,2066.txt,2,2,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1080,1081,2066.txt,3,3,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1081,1082,2066.txt,4,4,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1082,1083,2066.txt,5,5,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1083,1084,2066.txt,6,6,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1084,1085,2066.txt,7,7,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1085,1086,2066.txt,8,8,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1086,1087,2066.txt,9,9,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1087,1088,2066.txt,10,10,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1088,1089,2066.txt,11,11,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1089,1090,2066.txt,12,12,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1090,1091,2066.txt,13,13,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1091,1092,2066.txt,14,14,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1092,1093,2066.txt,15,15,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1093,1094,2066.txt,16,16,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 2809 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1094,1095,2066.txt,17,17,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1095,1096,2066.txt,18,18,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1096,1097,2066.txt,19,19,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1097,1098,2066.txt,20,20,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1098,1099,2066.txt,21,21,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1099,1100,2066.txt,22,22,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1100,1101,2066.txt,23,23,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1101,1102,2066.txt,24,24,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu Haruo Watanabe1 1Department of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1102,1103,2066.txt,25,25,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1103,1104,2066.txt,26,26,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1104,1105,2066.txt,27,27,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1105,1106,2066.txt,28,28,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Sexually Transmitted Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1106,1107,2066.txt,29,29,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1107,1108,2066.txt,30,30,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxA , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1108,1109,2066.txt,31,31,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for invasion genes , in Shigella sonnei .
"
1109,1110,2066.txt,32,32,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Shigella sonnei,Salmonella;Salmonella enterica;enterica;Typhimurium;Shigella sonnei,Salmonella enterica;Shigella sonnei;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 149 -- 2817 Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium Shu-ichi Nakayama ,1 Akira Kushiro ,2 Takashi Asahara ,2 Ryu-ichiro Tanaka ,2 Lan Hu ,3 Dennis J. Kopecko3 of Bacteriology , National Institute of Infectious Diseases , Toyama , 1-23-1 , Shinjuku-Ku , Tokyo 162-8640 , Japan Correspondence Haruo Watanabe 2Yakult Central Institute for Microbiological Research , Yaho 1796 , Kunitachi-Shi , Tokyo 186-8650 , Japan haruwata@nih.go.jp 3Laboratory of Enteric Diseases , Center for Biologics Evaluation and Research , FDA , Bldg 29 , 8800 Rockville Pike , Bethesda , MD 20892 , USA A two-component regulatory system , cpxR , plays an important role in the pH-dependent regulation of virF , a global activator for virulence determinants , in Shigella sonnei .
"
1110,1111,2066.txt,33,33,2,Salmonella;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Sal-monella;monella;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Sal-monella enterica serovar Typhimurium .
"
1111,1112,2066.txt,34,34,2,Salmonella;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Sal-monella;monella;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Sal-monella enterica serovar Typhimurium .
"
1112,1113,2066.txt,35,35,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium .
"
1113,1114,2066.txt,36,36,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Activation of hilA expression at low pH requires the cognate response regulator CpxR , in Salmonella enterica serovar Typhimurium ."
1114,1115,2072.txt,1,23,1,Yersinia pseudotuberculosis,Yersinia pseudotuberculosis,Yersinia pseudotuberculosis,"Positive regulation of flhDC expression by OmpR in Yersinia pseudotuberculosis .
"
1115,1116,2072.txt,2,24,1,Yersinia enterocolitica,Yersinia enterocolitica,Yersinia enterocolitica,OmpR controls Yersinia enterocolitica motility by positive regulation of flhDC expression .
1116,1117,789.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , CsrA is known to control the expression of STM3611 ."
1117,1118,1037.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Of 93 CsrA-induced genes identified in-vitro , we found that 88 % were downregulated during infection of J774A .1 macrophages by S. typhimurium ; consistent with this , csrA was also downregulated threefold ( Figure 1 ) [ 19,30 ] ."
1118,1119,2266.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Expression of these genes is downregulated in Salmonella , as evidenced by the finding that Fur represses expression of the entC gene inside Fig. 1C .
"
1119,1120,2266.txt,2,3,1,Salmonella,Salmonella,Salmonella,"Expression of these genes is downregulated in Salmonella , as evidenced by the finding that Fur represses expression of the entC gene inside macrophages ."
1120,1121,589.txt,1,7,2,Cornu aspersum;Cantareus apertus;Cornu aspersum;Cantareus apertus,helix;helix;helix;helix,Cornu aspersum;Cantareus apertus,"In addition to the BarA/SirA system , the AraC-like regulator RitA directly controls the hilA expression , while a helix-turn-helix DNA binding protein , negatively regulates the expression of the flhDC .
"
1121,1122,238.txt,1,1,2,Salmonella;Salmonella;Escherichia coli,S. enterica;enterica;E. coli,Escherichia coli;Salmonella,"In electro-phoretic mobility-shift assays , Fis was found to bind to both the gyrA of S. enterica , despite the strong divergence from the E. coli sequence on the part of the former .
"
1122,1123,238.txt,2,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"The retention of Fis-mediated repression of gyrA in S. enterica despite the radically different nucleotide sequence found immediately upstream of the Pribnow box is indicative of the physiological importance for the cell of regulation of gyrase expression by Fis .
"
1123,1124,238.txt,3,3,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Fis also binds to and represses the promoters of the gyrA genes in both E. coli and S. Typhimurium , resulting in reduced levels of DNA supercoiling .
"
1124,1125,238.txt,4,4,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"In E. coli , FIS binds the gyrA promoters to repress their expression ; similarly , FIS has been found to repress S. enterica gyrA .
"
1125,1126,204.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"In Escherichia coli , sbp is positively regulated by Cbl , a transcriptional regulator with 60 % amino-acid similarity to CysB , involved in the regulation of cysteine biosynthesis from organic sulfur sources .
"
1126,1127,204.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"In Escherichia coli , sbp is positively regulated by Cbl , a transcriptional regulator with 60 % amino-acid similarity to CysB , involved in the regulation of cysteine biosynthesis from organic sulfur sources ."
1127,1128,1790.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Considering the overexpression of qseB in the absence of qseC , the repression of invF transcription in DqseC provides further evidence that QseB can attenuate the invasion of epithelial cells by S. Typhi ."
1128,1129,2064.txt,1,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,S. Typhimurium;S. Typhimurium SL1344;Typhimurium;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium,"In this work , by applying a clustering method to S. Typhimurium SL1344 global expression data from the COLOMBOS database , we show that most of the known genes regulated by HilD , including the flagellar/chemot-axis genes , are indeed co-expressed with SPI-1 ; moreover , nine novel genes were identified : lpxR .
"
1129,1130,2064.txt,2,8,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL4247-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1130,1131,2064.txt,3,9,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL3812-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1131,1132,2064.txt,4,10,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of lpxR-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1132,1133,2064.txt,5,11,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of sinR-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1133,1134,2064.txt,6,12,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of phoH-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1134,1135,2064.txt,7,13,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of gtgE-cat ; consistently , HilD bound to the regulatory regions of lpxR .
"
1135,1136,2064.txt,8,14,2,Felis catus;Escherichia coli,cat;E. coli,Felis catus;Escherichia coli,"Additionally , we show that HilD can induce SL1896-cat , transcriptional-fusions , in the E. coli MC4100 strain ; consistently , HilD bound to the regulatory regions of lpxR .
"
1136,1137,2064.txt,9,15,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of FlhDC ; consistently , HilD bound to the regulatory regions of lpxR .
"
1137,1138,2064.txt,10,16,2,Felis catus;Salmonella;Salmonella,cat;Salmonella;Salmonella-specific,Felis catus;Salmonella,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of other Salmonella-specific regulators ; consistently , HilD bound to the regulatory regions of lpxR .
"
1138,1139,2064.txt,11,20,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the lpxR genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1139,1140,2064.txt,12,21,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the lpxR genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1140,1141,947.txt,1,4,1,Escherichia coli,E. coli,Escherichia coli,"CpxR-P also confers resistance to fosfomycin by directly repressing the expression of glpT , in the enterohemorrhagic E. coli strain ."
1141,1142,1579.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Just one work reported that a S. Typhimurium 1phoP mutant presents wild-type levels of lpxO expression , indicating that this gene is not regulated by PhoP/PhoQ ."
1142,1143,2070.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In vitro binding of FruR , to icd operons of Salmonella typhimurium .
"
1143,1144,2058.txt,1,1,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"YncC also Binds to the E. coli K-12 yciGFE Promoter Region -- The ortholog of yncC in E. coli K-12 -LRB- named mcbR -RRB- , regulates colanic acid production by repressing expression of the ybiM gene ."
1144,1145,1545.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - d Edmundo Calva * Departamento de Microbiolog Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane .
"
1145,1146,1545.txt,2,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - José Luis Puen Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane .
"
1146,1147,1545.txt,3,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - Mor Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane ."
1147,1148,748.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Therefore , SirA appears to be a major regulator of Salmonella intestinal virulence , whereas SdiA regulates other genes of srgB ."
1148,1149,1431.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1149,1150,1431.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1150,1151,628.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Expression of ptsG is regulated by ArcA in Escherichia coli .
1151,1152,614.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1152,1153,614.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1153,1154,1627.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
1154,1155,1182.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"SirA-dependent regulation of serovar Typhimurium sopB .
"
1155,1156,1182.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"SirA-dependent regulation of serovar Typhimurium sopB .
"
1156,1157,370.txt,1,2,1,synthetic construct,primer,synthetic construct,"Our results from primer-extension demonstrate that transcriptions of the identified loci are activated by SlyA because the mRNA level of transcripts is reduced significantly in the phoP mutants grown in low-Mg2 conditions -LRB- Fig .
"
1157,1158,1828.txt,1,5,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus musculus,S. Typhimurium;Typhimurium;mouse,Mus musculus;Salmonella enterica subsp. enterica serovar Typhimurium,"pagC was originally identified as a PhoP/PhoQ-regulated gene required for S. Typhimurium virulence in a mouse model and for its survival within macrophages ( Miller et al. , 1989 ) .
"
1158,1159,365.txt,1,1,1,unidentified,unknown,unidentified,"In the presence of an unknown environmental condition , HilC may activate invF expression .
"
1159,1160,365.txt,2,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1160,1161,365.txt,3,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1161,1162,365.txt,4,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1162,1163,365.txt,5,6,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1163,1164,365.txt,6,7,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1164,1165,365.txt,7,8,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1165,1166,365.txt,8,9,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1166,1167,365.txt,9,10,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1167,1168,365.txt,10,11,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.A.Lee Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1168,1169,365.txt,11,12,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1169,1170,365.txt,12,13,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1170,1171,365.txt,13,14,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1171,1172,365.txt,14,15,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1172,1173,365.txt,15,16,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1173,1174,365.txt,16,17,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1174,1175,365.txt,17,18,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1175,1176,365.txt,18,19,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1176,1177,365.txt,19,20,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , C.P.Lostroh Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1177,1178,365.txt,20,21,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1178,1179,365.txt,21,22,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1179,1180,365.txt,22,23,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilC , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1180,1181,365.txt,23,24,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1181,1182,365.txt,24,25,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1182,1183,365.txt,25,26,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- HilD , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1183,1184,365.txt,26,27,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , and Catherine A. Lee * Department of Microbiology and Molecular Genetics , Harvard Medical School , 200 Longwood Avenue , Boston , MA 02115 .
"
1184,1185,365.txt,27,28,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , , ‡ C. Phoebe Lostr .
"
1185,1186,365.txt,28,29,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC directly activate invF expressionS.Akbar , L.M.Schechter Molecular Microbiology 47 , 715 -- 728 AraC/XylS family members , directly activate virulence gene expression independently of HilA in Salmonella typhimurium Samina Akbar , † Lisa M. Schecht .
"
1186,1187,365.txt,29,34,2,unidentified plasmid;Prairie vole hantavirus;Prairie vole hantavirus,plasmid;pVV;pVV,Prairie vole hantavirus;unidentified plasmid,"These results also explain why our invF-lacZ reporter plasmid , pVV448 , was not activated by HilC to the same extent as the chromosomal invF-lacZ fusion because pVV448 does not contain the HilD-and HilC-dependent +1 of invF .
"
1187,1188,365.txt,30,36,1,Escherichia coli,E. coli,Escherichia coli,"In order to address whether additional S. typhimuriumspecific genes are required for HilC to activate invF , we examined both pSA7 reporters in E. coli TOP-10 cells .
"
1188,1189,365.txt,31,37,2,Prairie vole hantavirus;Escherichia coli,pVV;E. coli,Escherichia coli;Prairie vole hantavirus,"In order to address whether additional S. typhimuriumspecific genes are required for HilC to activate invF , we examined both pVV448 reporters in E. coli TOP-10 cells .
"
1189,1190,365.txt,32,38,1,Escherichia coli,E. coli,Escherichia coli,"We found that HilC induce invF expression from pSA7 in E. coli , comparable to that .
"
1190,1191,365.txt,33,39,1,Prairie vole hantavirus,pVV,Prairie vole hantavirus,"We also found that HilC , activates invF expression from pVV448 , also comparable to that .
"
1191,1192,1197.txt,1,1,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Salmonella;Typhi;plasmid;Salmonella;Typhi;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Bacterial strains IMSS-II ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrc12 ) and IMSS-III ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrcleuO-50 ) were independently transformed with fusions of each of the LeuO-regulated genes ( pKK232-9 [ STY3070 ] , pKK232-9 [ assT ] , pKK232-9 [ ompS1 ] , pKK232-9 [ ompS2 ] , pKK232-9 [ tpx ] , pKK232-9 [ ompX ] , and pKK232-9 [ STY1978 ] ) to generate individual strains containing the LeuO regulator , as well as the promoter region of the LeuO-dependent gene ."
1192,1193,417.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"mcpC , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI4-encoded genes , and repressed by SsrB .
"
1193,1194,417.txt,2,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"mcpC , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-associated genes , and repressed by SsrB .
"
1194,1195,417.txt,3,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"mcpC , are predicted to encode Salmo-nella-specific methyl-accepting chemotaxis proteins and display similar expression patterns to the SPI1-encoded genes , and repressed by SsrB ."
1195,1196,1801.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Fis also stimulates transcription of E. coli topA , when the bacteria experience oxidative-stress , something , although the severity of the oxidative-stress is unclear from an examination of the responses of classic oxidative-stress response genes .
"
1196,1197,1801.txt,2,2,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"Transcription of E. coli topA is driven by the interplay of at least four transcription start sites , allowing FIS to be both an activator of E. coli topA expression .
"
1197,1198,1801.txt,3,7,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"E. coli topA was upregulated in the absence of FIS in both exponential-growth and stationary-phase , whereas S. enterica topA expression was elevated in stationary-phase relative to wild-type cells .
"
1198,1199,1801.txt,4,8,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"E. coli topA was upregulated in the absence of FIS in both exponential-growth and stationary-phase , whereas S. enterica topA expression was unaffected in Dfis cells during exponential-growth .
"
1199,1200,1801.txt,5,9,2,unidentified plasmid;Escherichia coli;unidentified plasmid,plasmid;E. coli;plasmid,Escherichia coli;unidentified plasmid,"Although topA promoter function has routinely been studied using plasmid-based systems , our results indicate that in E. coli the expression of plasmid-borne PtopAEc is enhanced by FIS whereas the chromosomal copy of the promoter is repressed by FIS -LRB- compare 4A -RRB- .
"
1200,1201,1801.txt,6,10,2,unidentified plasmid;Escherichia coli;unidentified plasmid,plasmid;E. coli;plasmid,Escherichia coli;unidentified plasmid,"Although topA promoter function has routinely been studied using plasmid-based systems , our results indicate that in E. coli the expression of plasmid-borne PtopAEc is enhanced by FIS whereas the chromosomal copy of the promoter is repressed by FIS -LRB- compare Figs 3A -RRB- ."
1201,1202,1632.txt,1,14,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Consistent with the pleiotropic effects of hns mutations were regulated by H-NS in S. Typhimurium .
"
1202,1203,1632.txt,2,26,1,unidentified plasmid,plasmid,unidentified plasmid,Effect of low-temperature on the regulation of the plasmid-encoded hns gene R27 encode a protein related to the global modulator H-NS .
1203,1204,99.txt,1,4,1,Salmonella,Salmonella,Salmonella,"Collectively , these findings demonstrate that NsrR-regulated genes in addition to hmp are important for NO · detoxification , nitrosative-stress resistance and Salmonella virulence .
"
1204,1205,99.txt,2,6,1,Salmonella,Salmonella,Salmonella,"These data confirm previous findings with regard to hmp , and additionally demonstrate that the NsrR-regulated ytfE and STM1808 genes contribute to Salmonella virulence .
"
1205,1206,99.txt,3,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The NsrR-regulated hmp gene encodes a flavohemoglobin that is capable of detoxifying NO · under both aerobic and anaerobic conditions and is required for S. Typhimurium virulence ( Bang et al. , 2006 ; Crawford and Goldberg , 1998 ; Stevanin et al. , 2002 ) .
"
1206,1207,99.txt,4,8,1,Mus sp.,mice,Mus sp.,"We have identified a novel NsrR-regulated gene designated STM1808 , and demonstrated a role for specific NsrR-regulated genes in promoting growth during nitrosative-stress in-vitro ( hmp , STM1808 , ygbA and hcp ) and during systemic infection of mice in-vivo ( hmp , STM1808 , ytfE ) .
"
1207,1208,99.txt,5,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium the principal regulator of hmp expression during nitrosative-stress is the transcriptional repressor NsrR .
"
1208,1209,99.txt,6,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Microarray analysis of the S. Typhimurium NsrR regulon In previous studies , NsrR was identified as the major regulator of hmp transcription in S. Typhimurium ."
1209,1210,601.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,A very recent report has shown that DsbA acts as a periplasmic oxidant and that deletion of dsbA leads to increased transcription of PhoP-regulated genes in E. coli .
1210,1211,629.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Levy demonstrated that when the AcrAB-TolC pump in Escherichia coli is inhibited , cellular metabolites accumulate , inactivating AcrR and/or upregulating soxS expression .
"
1211,1212,629.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Levy demonstrated that when the AcrAB-TolC pump in Escherichia coli is inactivated , cellular metabolites accumulate , inactivating AcrR and/or upregulating soxS expression .
"
1212,1213,629.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ruiz demonstrated that when the AcrAB-TolC pump in Escherichia coli is inhibited , cellular metabolites accumulate , inactivating AcrR and/or upregulating soxS expression .
"
1213,1214,629.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ruiz demonstrated that when the AcrAB-TolC pump in Escherichia coli is inactivated , cellular metabolites accumulate , inactivating AcrR and/or upregulating soxS expression ."
1214,1215,1356.txt,1,1,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimu,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , STM4118 may be a PmrA-activated gene responsible for modification of LPS core with pEtN in S. enterica serovar Typhimu-rium .
"
1215,1216,1430.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Rentschler AE , Lovrich SD , Fitton R , Enos-Berlage J , Schwan WR OmpR regulation of the uropathogenic Escherichia coli fimB gene in an acidic/high osmolality environment ."
1216,1217,1342.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1217,1218,826.txt,1,1,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones are , therefore , introduced in this list with its function if known .
"
1218,1219,826.txt,2,2,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones are , therefore , introduced in this list with their corresponding gene if known .
"
1219,1220,826.txt,3,3,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show no expression in spleen , therefore , introduced in this list with its function if known .
"
1220,1221,826.txt,4,4,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show no expression in spleen , therefore , introduced in this list with their corresponding gene if known .
"
1221,1222,826.txt,5,5,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show medium expression levels in tumor , therefore , introduced in this list with its function if known .
"
1222,1223,826.txt,6,6,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show medium expression levels in tumor , therefore , introduced in this list with their corresponding gene if known .
"
1223,1224,826.txt,7,7,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show high expression levels in tumor , therefore , introduced in this list with its function if known .
"
1224,1225,826.txt,8,8,1,Escherichia coli,E.coli,Escherichia coli,"Gene Function Fold induction by hypoxia 59.7 27.4 Putative cytoplasmic protein sn-glycerol-3-phosphate transporter ydiH glpT bcsG mltD mdh mtfA frdA pfkA pflE nirB glpA ybaL 4 48 0.3 1.1 1.9 15.4 1368.1 14.6 150.1 65.3 886.6 0.4 Membrane protein ; endoglucanase Membrane-bound lytic murein transglycosylase D Malate dehydrogenase Mlc titration factor-A Fumarate reductase flavoprotein subunit Similar to E.coli 6-phosphofructokinase I Putative pyruvate formate lyase : : proton antiport protein 92-134-154-156 172-185-212-271 301 310 Clones show high expression levels in tumor , therefore , introduced in this list with their corresponding gene if known ."
1225,1226,66.txt,1,1,1,unidentified,not shown,unidentified,"To determine whether LeuO is the casA activator in N-minimal-medium , the pKK-375 fusion was introduced into the IMSS-1 leuO strain : we found that LeuO does not induce casA expression in N-minimal-medium , since the activity values in the leuO-deficient strain were the same as those in the wild-type strain -LRB- data not shown -RRB- ."
1226,1227,1418.txt,1,3,1,unidentified,unidentified,unidentified,"Moreover as rck is also regulated by an unidentified SdiA-independent system at 42 , it is conceivable that Rck invasion mechanism is not restricted to the gastrointestinal tract .
"
1227,1228,1418.txt,2,4,1,unidentified,unidentified,unidentified,"Moreover as rck is also regulated by an unidentified SdiA-independent system at 37 ° , it is conceivable that Rck invasion mechanism is not restricted to the gastrointestinal tract .
"
1228,1229,1418.txt,3,5,1,Salmonella,Salmonella,Salmonella,"rck operons are controlled by the Salmonella N-Acyl homoserine lactone receptor SdiA
"
1229,1230,1418.txt,4,6,1,Salmonella,Salmonella,Salmonella,"rck operons are controlled by the Salmonella N-Acyl homoserine lactone receptor SdiA
"
1230,1231,1418.txt,5,10,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella,S. Typhimurium;Typhimurium;plasmid;Enteritidis,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Different rck regulation by SdiA between S. Typhimurium is due to differences in the promoter region of the pefI-srgC operon As mentioned in the Introduction part , the pefI-srgC operon is present in its complete form only on the virulence plasmid of Enteritidis .
"
1231,1232,1418.txt,6,11,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;plasmid;Typhimu,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"Different rck regulation by SdiA between S. Typhimurium is due to differences in the promoter region of the pefI-srgC operon As mentioned in the Introduction part , the pefI-srgC operon is present in its complete form only on the virulence plasmid of the two broad-host-range serotypes Typhimu-rium .
"
1232,1233,1418.txt,7,12,2,Salmonella;unidentified plasmid;Salmonella,Enteritidis;plasmid;Enteritidis,Salmonella;unidentified plasmid,"Different rck regulation by SdiA between S. Enteritidis is due to differences in the promoter region of the pefI-srgC operon As mentioned in the Introduction part , the pefI-srgC operon is present in its complete form only on the virulence plasmid of Enteritidis .
"
1233,1234,1418.txt,8,13,3,Salmonella;unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,Enteritidis;plasmid;Typhimu,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;unidentified plasmid,"Different rck regulation by SdiA between S. Enteritidis is due to differences in the promoter region of the pefI-srgC operon As mentioned in the Introduction part , the pefI-srgC operon is present in its complete form only on the virulence plasmid of the two broad-host-range serotypes Typhimu-rium .
"
1234,1235,1418.txt,9,14,1,Salmonella,Enteritidis,Salmonella,"The PefIP2 promoters are absent in S. Enteritidis , suggesting a mechanism of regulation of rck expression by SdiA different between these two sero-types .
"
1235,1236,1418.txt,10,15,1,Salmonella,Enteritidis,Salmonella,"The PefIP1 promoters are absent in S. Enteritidis , suggesting a mechanism of regulation of rck expression by SdiA different between these two sero-types .
"
1236,1237,1418.txt,11,19,1,Salmonella,Salmonella,Salmonella,"Upon detecting AHLs produced by other species of bacteria , SdiA in Salmonella activates expression of two srg ( SdiA-regulated gene ) loci , the rck operon that encodes seven genes and the srgE gene ( 1 , 61 ) .
"
1237,1238,1418.txt,12,20,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"AI-1 Signaling in Salmonella Upon detecting AHLs produced by other species of bacteria , SdiA in Salmonella activates expression of two srg ( SdiA-regulated gene ) loci , the rck operon that encodes seven genes and the srgE gene ( 19 , 35 ) .
"
1238,1239,1418.txt,13,21,4,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Gardnerella vaginalis;unidentified plasmid,S. enterica;enterica;Typhimurium;ATCC 14018;plasmid,unidentified plasmid;Gardnerella vaginalis;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Abed et al. also showed that the promoter region of the rck operon , located on the S. enterica serovar Typhimurium ATCC 14018 plasmid , is regulated by the SdiA protein in the presence of AHL ."
1239,1240,2111.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1240,1241,832.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1241,1242,832.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1242,1243,72.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In this study , we generated two S. Typhimurium aroA strains , genetically modified to express Stx2 AB , as orally delivered vectors for the control of HUS .
"
1243,1244,72.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In this study , we generated two S. Typhimurium aroA strains , genetically modified to express a nontoxic Stx2 derivative , as orally delivered vectors for the control of HUS ."
1244,1245,749.txt,1,5,1,Escherichia coli,E. coli,Escherichia coli,"other studies _ performed in E. coli where rob was shown to be negatively regulated by both MarA by a direct interaction with its promoter region
"
1245,1246,1222.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Paratyphi,S. Typhimurium;Typhimurium;Paratyphi,Salmonella enterica subsp. enterica serovar Paratyphi;Salmonella enterica subsp. enterica serovar Typhimurium,"In contrast to S. Typhimurium and S. Paratyphi B dT , no pagK ( encoding a PhoPQ-activated protein ) was detected , but stkC was present ."
1246,1247,1544.txt,1,1,1,Salmonella,Salmonella,Salmonella,"A number of fusions to genes in known virulence regulons such as sodA ( manganese superoxide dismutase ) , pagJ ( a PhoPQ-activated gene ) and ssaE ( in Salmonella patho-genicity island 2 , SPI2 ) were identified ."
1247,1248,2059.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"It has been reported that StpA can negatively regulate expression of a reporter gene under the control of the hns promoter in E. coli ; although this could only be observed in the absence of hns , this raised the possibility that StpA-dependent gene expression could simply reflect changes in the level of H-NS ."
1248,1249,1236.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1249,1250,1236.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1250,1251,1236.txt,3,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1251,1252,1236.txt,4,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinP are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1252,1253,1236.txt,5,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1253,1254,1236.txt,6,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1254,1255,1236.txt,7,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1255,1256,1236.txt,8,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"dinB are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1256,1257,1236.txt,9,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1257,1258,1236.txt,10,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses much like umuDC , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1258,1259,1236.txt,11,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is LexA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent .
"
1259,1260,1236.txt,12,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"coli are two names for one gene , there is no dinB in S. typhimurium .8 ) The sbmC gene was originally identified by its ability to confer resistance to MccB17 at high copy number .9 MccB17 is a peptide antibiotic , possesses a quasicanonical LexA box , the expression of sbmC is RecA dependent .9 Thus , upregulation of dinP by all nine FQs is likely LexA dependent ."
1260,1261,2071.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Given the inhibitory effects of the DksA-dependent regulation of the transcription of amino-acid synthesis and transport , we tested whether the addition of amino-acids had any effect on the marked susceptibility of dksA mutant Salmonella strains to chemically generated NO .
"
1261,1262,1961.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor 02/11/12 http://dx.doi.org/10.4161/rna.19682 Results Hf affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1262,1263,1961.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor 02/11/12 http://dx.doi.org/10.4161/rna.19682 Results Hf affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1263,1264,1961.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor 02/11/12 http://dx.doi.org/10.4161/rna.19682 Results Hf affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1264,1265,1961.txt,4,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1265,1266,1961.txt,5,5,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1266,1267,1961.txt,6,6,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1267,1268,1961.txt,7,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1268,1269,1961.txt,8,8,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1269,1270,1961.txt,9,9,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1270,1271,1961.txt,10,10,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1271,1272,1961.txt,11,11,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1272,1273,1961.txt,12,12,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1273,1274,1961.txt,13,13,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1274,1275,1961.txt,14,14,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1275,1276,1961.txt,15,15,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why S. Typhimurium varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1276,1277,1961.txt,16,16,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1277,1278,1961.txt,17,17,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1278,1279,1961.txt,18,18,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1279,1280,1961.txt,19,19,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 ArcZ UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1280,1281,1961.txt,20,20,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1281,1282,1961.txt,21,21,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1282,1283,1961.txt,22,22,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1283,1284,1961.txt,23,23,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 RprA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1284,1285,1961.txt,24,24,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1285,1286,1961.txt,25,25,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for c-di-GMP signaling has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1286,1287,1961.txt,26,26,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Ute.Romling@ki.se Submitted : 08/19/1 ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 .
"
1287,1288,1961.txt,27,27,3,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;Salmonella;Salmonella typhimurium;typhimurium,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"However , whereas OxyS negatively influences RpoS abundance ,15 DsrA UTR , a process is reflected in the strong decrease of cellular RpoS levels in hfq mutant strains , while rpoS mRNA levels display only a minor reduction .22,23 Currently it is unclear why E. coli varies among both species .24 Whereas the relevance of RpoS for rdar morphotype development has been studied in great detail ,6,25 * Correspondence to : Ute Römling ; Emai ; Revised : 02/08/12 ; Accepte affects rdar morphotype expression in Salmonella typhimurium UMR1 ."
1288,1289,239.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"Previous studies have shown that FNR contribute to hlyE expression when E. coli is grown on a solid medium .
"
1289,1290,239.txt,2,11,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , global transcription factors FNR and CRP positively regulate hlyE expression by binding at the same site at the promoter region in response to oxygen depletion and glucose-starvation , respectively ."
1290,1291,1752.txt,1,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"The cAMP-CRP complex also regulates the transcription of the flhDC operon in S. enterica , although YdiV apparently masks the effect , at least under the conditions ."
1291,1292,588.txt,1,1,1,Escherichia coli;Escherichia coli,Escherichia coli;Escherichia coli,Escherichia coli,"The cellular concentration of the rs subunit of RNA polymerase in Escherichia coli is controlled at Hu , R. Regulation in the rpoS regulon of Escherichia coli .
"
1292,1293,588.txt,2,2,1,Escherichia coli;Escherichia coli,Escherichia coli;Escherichia coli,Escherichia coli,"The cellular concentration of the rs subunit of RNA polymerase in Escherichia coli is controlled at Hu , R. Regulation in the rpoS regulon of Escherichia coli ."
1293,1294,1008.txt,1,1,1,Salmonella,Salmonella,Salmonella,The pagD and pagC genes are PhoP-activated genes ( 9 ) located next to each other in the Salmonella chromosome but transcribed in opposite directions from a shared intergenic region .
1294,1295,1777.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - d Edmundo Calva * Departamento de Microbiolog Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane .
"
1295,1296,1777.txt,2,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - José Luis Puen Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane .
"
1296,1297,1777.txt,3,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR Positively Regulate the Salmonella enterica Serovar Typhi ompS2 Porin Gene Marcos Fernández - Mor Molecular , Instituto de Biotecnología , Universidad Nacional Autónoma de México , Cuernavaca , Morelos 62210 , México The Salmonella enterica serovar Typhi ompS2 gene codes for es for a 362-amino-acid outer membrane ."
1297,1298,1011.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Transcription of katN is RpoS and growth phase dependent Salmonella strains carrying the Tn5B21 inserts G57 and I28 were initially selected because they contain RpoSregulated lacZ gene fusions ( Ibanez-Ruiz et al. , 2000 ) .
"
1298,1299,1011.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Vijayakumar , S.R. , Kirchhof , M.G. , Patten , C.L. , and Schellhorn , H.E. ( 2004 ) RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis .
"
1299,1300,1011.txt,3,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Vijayakumar SRV , Kirchhof MG , Patten CL & Schellhorn HE ( 2004 ) RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis .
"
1300,1301,1011.txt,4,7,1,Escherichia coli,Escherichia coli,Escherichia coli,RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis .
1301,1302,591.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"LrhA is a positive regulator of flhDC in E. coli .
"
1302,1303,1005.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , translational regulator for flhD expression in E. coli in z66 revealed that OmpR did condition .
"
1303,1304,1005.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"However , translational regulator for flhD expression in E. coli in the high-osmolarity expression investigation of fljB revealed that OmpR did condition ."
1304,1305,2242.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,three genetically separated operator elements are required for repression of the Escherichia coli deoCABD promoters by the DeoR repressor
1305,1306,2256.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1306,1307,2256.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1307,1308,2281.txt,1,1,1,Hypostomus robinii,tetA,Hypostomus robinii,Strains contained HilD/HilC-repressible lac fusion under the control of a tetA promoter .
1308,1309,2295.txt,1,6,1,unidentified plasmid,plasmid,unidentified plasmid,"For ompS2 , we found that in the absence of IPTG considerable transcriptional activity was detected only at 12 h , showing that , as observed for STY3070 , the basal expression from the recombinant LeuO plasmid was enough for induction of the putative operon .
"
1309,1310,2295.txt,2,7,1,unidentified plasmid,plasmid,unidentified plasmid,"For ompS2 , we found that in the absence of IPTG considerable transcriptional activity was detected only at 12 h , showing that , as observed for STY3070 , the basal expression from the recombinant LeuO plasmid was enough for induction of the quiescent porin .
"
1310,1311,2295.txt,3,9,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1311,1312,2295.txt,4,11,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1312,1313,2295.txt,5,12,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1313,1314,2295.txt,6,13,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1314,1315,2295.txt,7,14,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1315,1316,2295.txt,8,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1316,1317,2295.txt,9,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1317,1318,2295.txt,10,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In Salmonella enterica serovar Typhi , LeuO activates the expression of ompS2 .
"
1318,1319,2295.txt,11,19,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1319,1320,2295.txt,12,20,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
1320,1321,208.txt,1,5,1,Salmonella,Salmonella,Salmonella,"For example , Fur has previously been shown to repress sitABCD , in Salmonella .
"
1321,1322,1944.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"This result demonstrates that in E. coli RamA can mediate an MDR phenotype independently of a functionally intact marA , likely by direct activation of MarA-controlled genes .
"
1322,1323,1207.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"While Rosenberg et al. presented evidence that mar is not necessary for bile-salt-mediated activation of acrAB in E. coli , they observed that induction of acrAB by bile-salts is dependent upon Rob .
"
1323,1324,1207.txt,2,3,1,Salmonella,Salmonella,Salmonella,"Other regulators of Rob did not contrib-ute to acrAB induction by indole in Salmonella .
"
1324,1325,1207.txt,3,4,1,Escherichia coli,E. coli,Escherichia coli,"Also , acrAB is reportedly induced by bile in a Robdependent manner in E. coli .
"
1325,1326,1207.txt,4,5,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcriptional factor Rob plays a major role in inducing acrAB expression in response to bile .
"
1326,1327,1207.txt,5,7,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcriptional factor Rob plays a major role in inducing acrAB expression in response to bile ."
1327,1328,744.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1328,1329,778.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1329,1330,2083.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Although fimY gene of Salmonella typhimurium is involved in regulating the amino-acid sequence of FimY shares very little homology with other known prokaryotic proteins in the GenBank database .
1330,1331,2097.txt,1,1,1,Leiostomus xanthurus;Leiostomus xanthurus;Leiostomus xanthurus;Leiostomus xanthurus,spoT;spoT;spoT;spoT,Leiostomus xanthurus,"The introduction of mutations in either of rtsAB contributed to reduced invasion gene expression in the these genes reduced hilA expression in both relA spoT strain , we examined the effects of both mutations relA spoT strains , indicating that the loss of hilA expression and overexpression of RtsA/B on the expression in the relA spoT strain was not due to repression by these of a hilA-lacZ fusion in relA spoT strains .
"
1331,1332,2097.txt,2,2,1,Leiostomus xanthurus;Leiostomus xanthurus,spoT;spoT,Leiostomus xanthurus,"The introduction of mutations in either of rtsAB contributed to reduced invasion gene expression in the these genes reduced hilA expression in both the wild type , we examined the effects of both mutations relA spoT strains , indicating that the loss of hilA expression and overexpression of RtsA/B on the expression in the relA spoT strain was not due to repression by these of a hilA-lacZ fusion in the wild types ."
1332,1333,1367.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhi;typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Emerging evidence indicates that OmpR regulates ompS2 in S. typhi .
"
1333,1334,1401.txt,1,3,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"HilD induces the expression of lpxR , in the absence of other Salmonella-specific regulators .
"
1334,1335,1401.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD positively regulates lpxR in S. Typhimurium .
"
1335,1336,1401.txt,3,6,1,Escherichia coli,E. coli,Escherichia coli,"HilD induces the expression of lpxR , in E. coli MC4100 ."
1336,1337,1415.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1337,1338,1415.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1338,1339,5.txt,1,5,1,unidentified,unknown,unidentified,"Under the influence of unknown environmental signals , MlrA induces the csgD expression .
"
1339,1340,2120.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"Research A Proteomic Analysis Reveals Differential S - Regulation of katN Locus by H-NS in Salmonella r , and Françoise Norel § Norel § ¶ ‡ The stationary-phase s controls a regulon required for general stress resistance of the closely related enterobacteria Salmonella and Esch .
"
1340,1341,2120.txt,2,3,1,Salmonella,Salmonella,Salmonella,"However , the sequence , the length , , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
1341,1342,2120.txt,3,4,1,Salmonella,Salmonella,Salmonella,"However , the position of H-NS binding regions , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
1342,1343,2120.txt,4,5,1,Salmonella,Salmonella,Salmonella,"However , the position of the McbR/YncC , relative to katN promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
1343,1344,2120.txt,5,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"A proteomic analysis reveals differential regulation of katN locus by H-NS in Escherichia coli K-12 .
"
1344,1345,2120.txt,6,7,1,Salmonella,Salmonella,Salmonella,A proteomic analysis reveals differential regulation of katN locus by H-NS in Salmonella .
1345,1346,1429.txt,1,1,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) ."
1346,1347,142.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,The opposite regulation of pagM by the Salmo-nella PhoP/PhoQ system is reminiscent of the control .
1347,1348,94.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"For example , in E. coli , IHF has been shown to regulate transcription of the ompR ."
1348,1349,1398.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of rpoE Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between fdhD .
"
1349,1350,1398.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of rpoE Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between sE .
"
1350,1351,1398.txt,3,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of fdhD Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between fdhD .
"
1351,1352,1398.txt,4,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of fdhD Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between fdhD .
"
1352,1353,1398.txt,5,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of fdhD Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between sE .
"
1353,1354,1398.txt,6,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp4 induce expression of fdhD Complementation of P2 susceptibility of rpoE mutant S. Typhimurium by fdhD overexpression suggested a possible regulatory link between sE .
"
1354,1355,1398.txt,7,8,1,Salmonella,Salmonella,Salmonella,"While it is clear that Crp4 kill Salmonella by distinct actions , the targeting of the cytoplasmic membrane in both cases may be responsible for the common ability of these peptides to activate the E s-dependent induction of fdhD expression ."
1355,1356,80.txt,1,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"In S. enterica the global regu-2 SoxS regulate the acrAB operon by binding to mar/sox boxes .
"
1356,1357,80.txt,2,3,1,Salmonella,Salmonella,Salmonella,"Other regulators of SoxS did not contrib-ute to acrAB induction by indole in Salmonella .
"
1357,1358,80.txt,3,4,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of acrAB is controlled by SoxS .
"
1358,1359,80.txt,4,6,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by SoxS .
"
1359,1360,1603.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of micF is controlled by the homologous proteins MarA .
"
1360,1361,397.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , Fig. 4D , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
1361,1362,397.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , Fig. 4D , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
1362,1363,397.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , one , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
1363,1364,397.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , one , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
1364,1365,397.txt,5,5,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , the other , is reminiscent of the mode of transcription regulation of the divergently transcribed treR genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
1365,1366,397.txt,6,6,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , the other , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP ."
1366,1367,1165.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Cooperative interaction between Fnr in the regulation of the cydAB operon of Escherichia coli .
"
1367,1368,1165.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in activation .
"
1368,1369,1165.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in repression .
"
1369,1370,1165.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in activation .
"
1370,1371,1165.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in repression .
"
1371,1372,1165.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in activation .
"
1372,1373,1165.txt,7,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of Fnr in repression .
"
1373,1374,1165.txt,8,8,1,Escherichia coli,Escherichia coli,Escherichia coli,Cooperative interaction between Fnr in the regulation of the cydAB operon of Escherichia coli .
1374,1375,1159.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , five transcription factors have been implicated : hmp transcription is repressed by Fur .
"
1375,1376,1159.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , five transcription factors have been implicated : hmp transcription is repressed by Fur ."
1376,1377,1818.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Transcription of katN is RpoS and growth phase dependent Salmonella strains carrying the Tn5B21 inserts G57 and I28 were initially selected because they contain RpoSregulated lacZ gene fusions ( Ibanez-Ruiz et al. , 2000 ) .
"
1377,1378,1818.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Consistent with a role for RpoS in the regulation of katN was not produced in the Salmonella rpoS Fig. 2A .
"
1378,1379,1818.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,Salmonella;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella,Consistent with a role for RpoS in the regulation of katN was not produced in the Salmonella rpoS mutant SL1344K .
1379,1380,354.txt,1,1,1,synthetic construct,primer,synthetic construct,"Among the SPI-5 genes , primer-extension analysis revealed that pipC were induced at entry into the stationary-phase under standard growt conditions independently of RpoS ."
1380,1381,340.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1381,1382,1831.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,the expression of the SPI-1 genes when S. Typhimurium is grown in the presence of cpxR _ indicating that the absence of CpxA leads to the repression of the SPI-1 genes through CpxR
1382,1383,369.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
1383,1384,1819.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"As mentioned in the Introduction , the expression of ilvIH in E. coli K-12 is activated by Lrp .
"
1384,1385,433.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Moreover , these results also demonstrate that the S. typhimurium Fur positively regulates the expression of the flhD master operon .
"
1385,1386,433.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Moreover , the S. typhimurium flhD master operon , is positively regulated by Fur through an iron-independent mechanism ."
1386,1387,1158.txt,1,2,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Lee , H. , Hsu , F.F. , Turk , J. , and Groisman , E.A. ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanola-mine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1387,1388,1158.txt,2,3,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"[ 21 ] Lee , H. , Hsu , F.F. , Turk , J. and Groisman , E.A. ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1388,1389,1158.txt,3,6,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid a and poly-myxin resistance in Salmonella enterica .
"
1389,1390,1158.txt,4,7,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Lee , H. , Hsu , F.F. , Turk , J. , and Groisman , E.A. ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanola-mine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1390,1391,1158.txt,5,10,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and poly-myxin resistance in Salmonella enterica .
"
1391,1392,1158.txt,6,11,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"68 , 6139 -- 6146 58 Lee , H. et al. ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1392,1393,1158.txt,7,13,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Lee H , Hsu FF , Turk J & Groisman EA ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1393,1394,1158.txt,8,14,1,unidentified,not shown,unidentified,"The absence of transcriptional linkage between the RpoN and the PmrA regulons was corroborated because no significant differences were observed when the expression of PmrAcontrolled genes ( pmrI , pmrC , pmrF , and ugd ) was compared either in a RpoN or in a 1 DrpoN strain grown in LB ( exponential or stationary-phase ) or in a low-Mg N-21 minimal-medium , which are PhoP-and PmrA-inducing conditions ( Soncini & Groisman , 1996 ) ( Fig. 3a and data not shown ) .
"
1394,1395,1158.txt,9,16,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and poly-myxin resistance in Salmonella enterica .
"
1395,1396,1158.txt,10,18,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1396,1397,1158.txt,11,19,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and poly-myxin resistance in Salmonella enterica .
"
1397,1398,1158.txt,12,20,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica .
"
1398,1399,1158.txt,13,22,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Lee , H. , Hsu , F.F. , Turk , J , and Groisman , E.A. ( 2004 ) The PmrA-regulated pmrC gene mediates phosphoethanol-amine modification of lipid a and polymyxin resistance in Salmonella enterica .
"
1399,1400,1158.txt,14,23,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"[ 75 ] H. Lee , F.F. Hsu , J. Turk , E.A. Groisman , The PmrA-regulated pmrC gene mediates phosphoethanolamine modification of lipid-A and polymyxin resistance in Salmonella enterica , J. Bacteriol ."
1400,1401,1170.txt,1,1,1,Escherichia coli,E : coli,Escherichia coli,InvF are sufficient to activate transcription of sigD ± lacZYA in E : coli CC118lpir .
1401,1402,382.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1402,1403,382.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1403,1404,1399.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] .
"
1404,1405,625.txt,1,1,1,Salmonella,Salmonella,Salmonella,the PhoP-PhoQ _ activated Salmonella genes pagK and pagJ
1405,1406,631.txt,1,2,1,unidentified,unknown,unidentified,"When activated under iron-replete conditions by unknown signal , the RstA protein binds to the feoA promoter to activate transcription of the feoAB operon ."
1406,1407,157.txt,1,20,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Genes previously characterised as OmpR-regulated with decreased levels of expression in S. Typhi Ty2 ompR mutants were tviABCDE , vexABCDE , ompC and ompS .
"
1407,1408,157.txt,2,22,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"ompR are required for resistance to the bile salt sodium deoxycholate in S. Typhi We have shown that LtrR has a role in the synthesis of the major outer membrane proteins OmpF and OmpC through its direct regulation of OmpR .
"
1408,1409,157.txt,3,23,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"The ompR mutant was also complemented with the ompR coding region from Escheri-chia coli under the control of pQE60ompR ; this construct was used since it is identical to the S. Typhi OmpR protein .
"
1409,1410,157.txt,4,24,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"The ompR mutant was also complemented with the ompR coding region from Escheri-chia coli under the control of an IPTG-inducible promoter ; this construct was used since it is identical to the S. Typhi OmpR protein .
"
1410,1411,157.txt,5,25,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"CadC interacts directly with OmpR Since S. enterica serovar Typhimurium OmpR response re-gulator was shown to induce its own synthesis by binding to its promoter , we hypothesized that CadC could mediate the repression of ompR gene expression by direct interaction with OmpR , sterically hindering binding of OmpR to RNA polymerase .
"
1411,1412,157.txt,6,26,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"CadC interacts directly with OmpR Since S. enterica serovar Typhimurium OmpR response re-gulator was shown to induce its own synthesis by binding to its promoter , we hypothesized that CadC could mediate the repression of ompR gene expression by direct interaction with OmpR , sterically hindering binding of OmpR to its own promoter .
"
1412,1413,802.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"sseC , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
1413,1414,42.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by the global regulators RcsB was evaluated by generating three isogenic S. Typhi deletion mutants of fur .
1414,1415,2135.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Autoregulator of the Escherichia coli crp gene : CRP is a transcriptional repressor for its own gene .
"
1415,1416,2135.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,Autoregulation of the Escherichia coli crp gene : CRP is a transcriptional repressor for its own gene .
1416,1417,180.txt,1,1,1,Salmonella,Salmonella,Salmonella,PmrA Reduces Salmonella Virulence by Repressing ssrB Transcription .
1417,1418,1414.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1418,1419,1400.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"Wild-type S. typhimu-rium containing CysB-regulated promoter reporters for sbp , cysP , and cysJ were grown in M9-minimal-medium with sulfate as the sole sulfur source with and without 50 mM methyl viologen to cause mild oxidative-stress ."
1419,1420,2109.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In vitro binding of FruR , to the fru , pps , ace , pts of Salmonella typhimurium .
"
1420,1421,2096.txt,1,1,1,synthetic construct,Primer,synthetic construct,"Primer extension and DNase I footprinting identified multiple SsrB-regulated promoters within SPI-2 located upstream of ssaB , sseA , ssaG and ssaM ."
1421,1422,2082.txt,1,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,S. Typhimurium;S. Typhimurium SL1344;Typhimurium;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium,"In this work , by applying a clustering method to S. Typhimurium SL1344 global expression data from the COLOMBOS database , we show that most of the known genes regulated by HilD , including the flagellar/chemot-axis genes , are indeed co-expressed with SPI-1 ; moreover , nine novel genes were identified : sinR .
"
1422,1423,2082.txt,2,8,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL4247-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1423,1424,2082.txt,3,9,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL3812-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1424,1425,2082.txt,4,10,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of lpxR-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1425,1426,2082.txt,5,11,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of sinR-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1426,1427,2082.txt,6,12,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of phoH-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1427,1428,2082.txt,7,13,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of gtgE-cat ; consistently , HilD bound to the regulatory regions of sinR .
"
1428,1429,2082.txt,8,14,2,Felis catus;Escherichia coli,cat;E. coli,Felis catus;Escherichia coli,"Additionally , we show that HilD can induce SL1896-cat , transcriptional-fusions , in the E. coli MC4100 strain ; consistently , HilD bound to the regulatory regions of sinR .
"
1429,1430,2082.txt,9,15,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of FlhDC ; consistently , HilD bound to the regulatory regions of sinR .
"
1430,1431,2082.txt,10,16,2,Felis catus;Salmonella;Salmonella,cat;Salmonella;Salmonella-specific,Felis catus;Salmonella,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of other Salmonella-specific regulators ; consistently , HilD bound to the regulatory regions of sinR .
"
1431,1432,2082.txt,11,20,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the sinR genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1432,1433,2082.txt,12,21,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the sinR genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1433,1434,989.txt,1,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"The Escherichia coli SOS gene sbmC is regulated by H-NS during stationary growth phase .
"
1434,1435,989.txt,2,4,1,Escherichia coli,Escherichia coli,Escherichia coli,The Escherichia coli SOS gene sbmC is regulated by H-NS during the SOS-induction .
1435,1436,751.txt,1,1,1,Salmonella virus P22,P22,Salmonella virus P22,"One such isolate was re-constructed by P22 HT transduction to confirm that the Tn10dCm insertion suppressed hilC : : lac downregulation by LeuO .
"
1436,1437,751.txt,2,2,1,Salmonella virus P22,P22,Salmonella virus P22,"One such isolate was purified by P22 HT transduction to confirm that the Tn10dCm insertion suppressed hilC : : lac downregulation by LeuO .
"
1437,1438,2055.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"E. coli AraC activates transcription of the araBAD , araFGH , araE in the presence of its inducer , L-arabinose ."
1438,1439,962.txt,1,1,2,unidentified plasmid;Escherichia coli,plasmid;E. coli,Escherichia coli;unidentified plasmid,"RESULTS AND DISCUSSIONS Screen for Fur-regulated Promoters and Sequence Analyses of DNA Regions Identified by FURTA Fur-regulated promoters and iron binding proteins carried on a plasmid can be identified by transference into E. coli H1717 ( Stojiljkovic et al. , 1994 ) , which carries fhuF < lacZ ; a Fur-regulated gene fusion sensitive to changes in repressor ( Fur-Fe ) þ2 concentration .
"
1439,1440,962.txt,2,2,2,unidentified plasmid;Escherichia coli,plasmid;E. coli,Escherichia coli;unidentified plasmid,"RESULTS AND DISCUSSIONS Screen for Fur-regulated Promoters and Sequence Analyses of DNA Regions Identified by FURTA Fur-regulated promoters and iron binding proteins carried on a plasmid can be identified by transference into E. coli H1717 ( Stojiljkovic et al. , 1994 ) , which carries fhuF < lacZ ; a Fur-regulated gene fusion sensitive to changes in repressor ( Fur-Fe ) þ2 concentration .
"
1440,1441,962.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;plasmid;S. Typhimurium;Typhimurium,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , lacZ reporter plasmid was transformed into S. Typhimurium .
"
1441,1442,962.txt,4,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,S. Typhi;Typhi;plasmid,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , lacZ reporter plasmid was transformed into their isogenic fur mutants .
"
1442,1443,962.txt,5,5,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Escherichia coli,S. Typhi;Typhi;plasmid;E. coli,unidentified plasmid;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"To determine whether Fur regulation of tcf was specific to S. Typhi , lacZ reporter plasmid was transformed into E. coli K-12 ."
1443,1444,2041.txt,1,1,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Salmonella;Typhi;plasmid;Salmonella;Typhi;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Bacterial strains IMSS-II ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrc12 ) and IMSS-III ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrcleuO-50 ) were independently transformed with fusions of each of the LeuO-regulated genes ( pKK232-9 [ STY3070 ] , pKK232-9 [ assT ] , pKK232-9 [ ompS1 ] , pKK232-9 [ ompS2 ] , pKK232-9 [ tpx ] , pKK232-9 [ ompX ] , and pKK232-9 [ STY1978 ] ) to generate individual strains containing the LeuO regulator , as well as the promoter region of the LeuO-dependent gene .
"
1444,1445,2069.txt,1,3,1,Escherichia coli,E. coli,Escherichia coli,"In this regard , it has been reported that expression of cysK in E. coli is under the control of CysB .
"
1445,1446,792.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Fis represses transcription of the gyrA genes in E. coli .
"
1446,1447,792.txt,2,2,2,Salmonella;Salmonella;Escherichia coli;Salmonella;Salmonella,S.enterica;enterica;E. coli;S. enterica;enterica,Escherichia coli;Salmonella,") Discussion The finding that the sequences of S.enterica gyrA genes diverge significantly upstream of the -- 10 box of the promoter raised the possibility that the well-characterized Fis-mediated repression of gyrA transcription seen in E. coli might not be reproduced in S. enterica .
"
1447,1448,792.txt,3,3,2,Escherichia coli;Escherichia coli;Salmonella;Salmonella,E. coli;E. coli;S. enterica;enterica,Escherichia coli;Salmonella,") Discussion The finding that the sequences of the E. coli gyrA genes diverge significantly upstream of the -- 10 box of the promoter raised the possibility that the well-characterized Fis-mediated repression of gyrA transcription seen in E. coli might not be reproduced in S. enterica .
"
1448,1449,792.txt,4,4,2,Salmonella;Salmonella;Escherichia coli,S. enterica;enterica;E. coli,Escherichia coli;Salmonella,"Thus , Fis has the potential to act as a repressor at the S. enterica gyrA promoter by interfering with RNA polymerase binding , as it does in E. coli .
"
1449,1450,792.txt,5,5,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"The retention of Fis-mediated repression of gyrA in S. enterica despite the radically different nucleotide sequence found immediately upstream of the Pribnow box is indicative of the physiological importance for the cell of regulation of gyrase expression by Fis .
"
1450,1451,792.txt,6,7,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"In E. coli , FIS binds the gyrA promoters to repress their expression ; similarly , FIS has been found to repress S. enterica gyrA ."
1451,1452,1212.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The yncE gene is induced under iron restriction through the action of the global iron regulator Fur in E. coli ; however , the iron restriction did not affect the transcription of the yncD gene .
"
1452,1453,1212.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"The yncE gene is induced under iron restriction through the action of the global iron regulator Fur in E. coli ; however , the regulator did not affect the transcription of the yncD gene ."
1453,1454,1574.txt,1,1,1,unidentified plasmid;unidentified plasmid,plasmid;plasmid,unidentified plasmid,"Effect of lrp mutations on conjugal plasmid transfer Together , the results suggest that Lrp might act as an activator of conjugal plasmid transfer .
"
1454,1455,1574.txt,2,2,1,unidentified plasmid;unidentified plasmid,plasmid;plasmid,unidentified plasmid,"This magnification of the difference in the absence of fertility inhibition further supports the model that Lrp acts as an activator of pSLT plasmid transfer : a FinO-plasmid is no longer derepressed when an lrp mutation reduces traJ transcription .
"
1455,1456,1945.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Clarke M , Sperandio V. Transcriptional regulation of flhDC by sigma-28 in enterohaemorrhagic Escherichia coli .
"
1456,1457,1945.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,Transcriptional regulation of flhDC by sigma-28 ( FliA ) in enterohaemorrhagic Escherichia coli .
1457,1458,2294.txt,1,12,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Binding of the RamR Repressor to Mutated Promoters of the ramA Gene Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium Sylvie Baucheron et moléculaires , Nouzilly , Francec The transcriptional activator RamA is involved in nce by increasing expression of the AcrAB-TolC RND-type efflux system in several pathogenic Enterobacteriaceae .
"
1458,1459,2294.txt,2,13,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Binding of the RamR Repressor to Mutated Promoters of the ramA Gene Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium Sylvie Baucheron et moléculaires , Nouzilly , Francec The transcriptional activator RamA is involved in ed in multidrug resi by increasing expression of the AcrAB-TolC RND-type efflux system in several pathogenic Enterobacteriaceae .
"
1459,1460,2294.txt,3,24,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Binding of the RamR Repressor to Wild-Type Promoters of the ramA Gene Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium Sylvie Baucheron et moléculaires , Nouzilly , Francec The transcriptional activator RamA is involved in nce by increasing expression of the AcrAB-TolC RND-type efflux system in several pathogenic Enterobacteriaceae .
"
1460,1461,2294.txt,4,25,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Binding of the RamR Repressor to Wild-Type Promoters of the ramA Gene Involved in Efflux-Mediated Multidrug Resistance in Salmonella enterica Serovar Typhimurium Sylvie Baucheron et moléculaires , Nouzilly , Francec The transcriptional activator RamA is involved in ed in multidrug resi by increasing expression of the AcrAB-TolC RND-type efflux system in several pathogenic Enterobacteriaceae .
"
1461,1462,2294.txt,5,27,1,Salmonella,Salmonella,Salmonella,"that the transcriptional activator RamA , plays the dominant role in the regulation of AcrAB -- TolC in Salmonella -- 17 To date have been reported ; however , Nikaido et al. 18,19 demonstrated increased expression of ramA in response to the bacterial metabolite indole
"
1462,1463,2294.txt,6,29,1,Salmonella,Salmonella,Salmonella,"that the transcriptional activator RamA , plays the dominant role in the regulation of AcrAB -- TolC in Salmonella -- 17 To date have been reported ; however , Nikaido et al. 18,19 demonstrated increased expression of ramA in response to the bacterial metabolite indole
"
1463,1464,2294.txt,7,31,1,Salmonella,Salmonella,Salmonella,"that the transcriptional activator RamA , plays the dominant role in the regulation of AcrAB -- TolC in Salmonella -- 17 To date have been reported ; however , Nikaido et al. 18,19 demonstrated increased expression of ramA in response to the bacterial metabolite indole
"
1464,1465,1789.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,S2 based on the report that E. coli KdgR contributes to the regulation of eda .
1465,1466,221.txt,1,1,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
1466,1467,221.txt,2,2,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
1467,1468,221.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
1468,1469,221.txt,4,4,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd in-vitro , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
1469,1470,221.txt,5,5,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
1470,1471,221.txt,6,6,2,Salmonella;Escherichia coli,Salmonella;Escherichia coli,Escherichia coli;Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes Escherichia coli is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- .
"
1471,1472,221.txt,7,7,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- E.A.G. , unpublished results -RRB- .
"
1472,1473,221.txt,8,8,1,Salmonella,Salmonella,Salmonella,"Despite the lack of conservation in this atypically located regulatory site , we demonstrated that the PhoP protein binds to the Salmonella ugd promoter in-vivo , inactivation of the PhoP box in the ugd promoter abolishes PhoP-dependent ugd transcription is unable to promote ugd transcription under the PhoP-dependent conditions -LRB- C. Mouslim , unpublished results -RRB- ."
1473,1474,1986.txt,1,1,1,unidentified plasmid;unidentified plasmid,plasmid;plasmid,unidentified plasmid,We next examined transcription of the two Fur-repressed genes in the strain that carried deletions of the rstA and fur genes and harbored either the RstA expression plasmid or the plasmid vector ; analysis determined that the mRNA levels of fhuA and fhuF were similar to those in the fur deletion strain regardless of RstA expression ( Fig. 1B ) .
1474,1475,2243.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1475,1476,1004.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,LeuO has also been shown to repress the acid stress regulator cadC in E. coli
1476,1477,590.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Fis represses transcription of the gyrB genes in E. coli .
"
1477,1478,590.txt,2,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Given the strong sequence similarity between the S. enterica gyrB gene , we anticipated that its promoter would show evidence of repression by Fis to a similar degree to approximately 1.5-fold .
"
1478,1479,590.txt,3,3,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Given the strong sequence similarity between the S. enterica gyrB gene , we anticipated that its promoter would show evidence of repression by Fis to a similar degree to that .
"
1479,1480,590.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , Fis-mediated repression of the gyrB promoter acts not through blocking of RNA polymerase binding but through interference with the formation of an open transcription complex by the bound polymerase .
"
1480,1481,590.txt,5,6,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"In E. coli , FIS binds the gyrB promoters to repress their expression ; similarly , FIS has been found to repress S. enterica gyrB ."
1481,1482,1776.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"This lowering of acnA transcription was not observed when b-galactosidase activity from PacnA-lacZ was measured in anaerobic cultures of the S. Typhimurium fnr mutant , suggesting that FNR represses acnA expression ."
1482,1483,584.txt,1,2,1,Salmonella,Salmonella,Salmonella,"This motility requires the PhoP-activated mgtA , mgtC , and pagM genes , which specify a Mg2 + transporter , an inhibitor of Salmonella "
1483,1484,1010.txt,1,1,2,Cornu aspersum;Cantareus apertus,helix;helix,Cornu aspersum;Cantareus apertus,"We evaluated the utilities of these vectors by fusing the-helix domains of PspA and pneumococcal surface protein C ( PspC ) , to bla SS under the control of the Ptrc promoter .
"
1484,1485,1010.txt,2,2,2,Cornu aspersum;Cantareus apertus,helix;helix,Cornu aspersum;Cantareus apertus,"We evaluated the utilities of these vectors by fusing the-helix domains of pneumococcal surface protein A and pneumococcal surface protein C ( PspC ) , to bla SS under the control of the Ptrc promoter ."
1485,1486,2269.txt,1,25,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"However , micF are also induced by stress signals in additional ways , it was suggested that S. enterica to salicylate activates MarA through binding to its repressor , MarR .
"
1486,1487,2269.txt,2,26,1,Escherichia coli,E. coli,Escherichia coli,"However , micF are also induced by stress signals in additional ways , it was suggested that exposure of E. coli activates MarA through binding to its repressor , MarR .
"
1487,1488,592.txt,1,1,1,Salmonella,Salmonella,Salmonella,Transcription of the Salmonella pcgL gene is regulated by the PhoP-PhoQ two-component system .
1488,1489,586.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"More recently , it was shown that leuO expression in E. coli can be activated by the BglJ regulators .
"
1489,1490,1984.txt,1,4,1,Salmonella,Salmonella,Salmonella,"The gene Fis-binding sites upstream of the promoter ( Van Delft independent regulation of the tufB gene in Salmonella , Fig. 9 ."
1490,1491,1990.txt,1,1,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Pectinatus brassicae;Thermococcus aggregans,S. Typhi;Typhi;strain Ty;strain Ty,Thermococcus aggregans;Pectinatus brassicae;Salmonella enterica subsp. enterica serovar Typhimurium,"The influence of SlyASTy on the expression of clyASTy could not be directly studied in S. Typhi , because a non-virulent aroA mutant of strain Ty2 , was hence rather unsuitable as host strain
"
1491,1492,1990.txt,2,2,3,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Pectinatus brassicae;Thermococcus aggregans,S. Typhi;Typhi;strain Ty;strain Ty,Thermococcus aggregans;Pectinatus brassicae;Salmonella enterica subsp. enterica serovar Typhimurium,"The influence of SlyASTy on the expression of clyASTy could not be directly studied in S. Typhi , because a non-virulent aroA mutant of strain Ty2 , grew poorly on standard agar plates"
1492,1493,551.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In fact , inactivation of stpA only has phenotypic effects in the absence of hns , indicating that the deletion of stpA is fully compensated by H-NS in E. coli .
"
1493,1494,545.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,the V. cholerae CytR protein is able to repress transcription of the udp gene of E. coli in-vivo
1494,1495,2296.txt,1,1,1,Vibrio vulnificus,Vibrio vulnificus,Vibrio vulnificus,"Lee , H.J. , Park , S.J. , Choi , S.H. , Lee , K.H. Vibrio vulnificus rpoS expression is repressed by direct binding of cAMP-CRP complex to its two promoter regions .
"
1495,1496,2296.txt,2,5,1,unidentified,not shown,unidentified,"The whole rpoS promoter bound to CRP in data not shown .
"
1496,1497,2296.txt,3,10,1,Vibrio vulnificus,Vibrio vulnificus,Vibrio vulnificus,"On the other hand , it has been reported that rpoS expression is repressed by direct binding of CRP-cAMP to its promoter region in Vibrio vulnificus .
"
1497,1498,2296.txt,4,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Sun demonstrated direct binding of CRP to the rpoS promoter region in S. Typhimurium , where it is able to bind to two sites in this sequence .
"
1498,1499,2296.txt,5,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Cheng demonstrated direct binding of CRP to the rpoS promoter region in S. Typhimurium , where it is able to bind to two sites in this sequence .
"
1499,1500,2296.txt,6,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Both sites are conserved in S. Typhi rpoS promoter , suggesting a dir-ect binding by CRP .
"
1500,1501,579.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by Fur was evaluated by generating three isogenic S. Typhi deletion mutants of argR .
1501,1502,1953.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1502,1503,948.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"PhoP-suppressed genes include prgH and fliC [ 55 -- 57 ] , PhoP-activated genes include pmrAB , another two-component signal transduction system involved primarily in the protection of Salmo-nella to cationic antimicrobial peptides ( CAMP , see below ) [ 58 ] , mgtA and mgtCB encoding Mg transport 2 + systems , phoN , a periplasmic non-specific acid phospha-tase , pcgL encoding a periplasmic D-Ala -- D-Ala dipeptidase , or pagL , pagP and pgtE which contribute to increased resistance to CAMPs [ 59 -- 62 ] ."
1503,1504,1576.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1504,1505,1576.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1505,1506,784.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"The Escherichia coli SOS gene sbmC is regulated by RpoS during stationary growth phase .
"
1506,1507,784.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,The Escherichia coli SOS gene sbmC is regulated by RpoS during the SOS-induction .
1507,1508,196.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,LeuO has also been shown to repress the small RNA dsrA in E. coli
1508,1509,68.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1509,1510,68.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1510,1511,800.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"-LRB- A to D -RRB- The expression of the master regulator of rdar morphotype expression , CsgD , in the STM1344 mutant was downregulated in comparison to that in wild-type S. Typhimurium UMR1 .
"
1511,1512,800.txt,2,7,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,A role for the EAL-like protein STM1344 in regulation of CsgD expression and motility in Salmonella enterica serovar Typhimurium .
1512,1513,814.txt,1,3,1,Salmonella,Salmonella,Salmonella,"In vitro transcription experiments with purified Crl protein of Salmonella showed that Crl stimulates S-dependent transcription at the csgD promoters .
"
1513,1514,141.txt,1,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ryu , S. Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium .
"
1514,1515,141.txt,2,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ryu , S. Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium .
"
1515,1516,141.txt,3,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium .
"
1516,1517,141.txt,4,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium .
"
1517,1518,141.txt,5,7,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Fis is required for proper regulation of ssaG expression in Salmonella enterica serovar Typhimurium .
1518,1519,155.txt,1,1,1,synthetic construct;synthetic construct,Synthetic;Synthetic,synthetic construct,"Synthetic minimal-medium with limiting ( PCN-P media ) was used for the analyses of promoters under control of the SsrB regulatory system in-vitro as described .33 Synthetic medium was supplemented with 1 mM adenine for growth of the auxotrophic purD strain .
"
1519,1520,155.txt,2,2,1,synthetic construct;synthetic construct,Synthetic;Synthetic,synthetic construct,"Synthetic minimal-medium with PCN media amounts of phosphate was used for the analyses of promoters under control of the SsrB regulatory system in-vitro as described .33 Synthetic medium was supplemented with 1 mM adenine for growth of the auxotrophic purD strain .
"
1520,1521,155.txt,3,3,1,synthetic construct;synthetic construct,Synthetic;Synthetic,synthetic construct,Synthetic minimal-medium with non-limiting amounts of phosphate was used for the analyses of promoters under control of the SsrB regulatory system in-vitro as described .33 Synthetic medium was supplemented with 1 mM adenine for growth of the auxotrophic purD strain .
1521,1522,633.txt,1,1,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"A mutation in the S. enterica serovar Typhimurium phoQ gene which results in a threonine residue at codon 48 being replaced with an isoleucine results in overexpression of several PhoP-activated genes ( 8 , 19 , 20 , 24 ) .
"
1522,1523,633.txt,2,4,1,Salmonella,Salmonella,Salmonella,"Transcriptional regulation of Salmonella virulence -- a phoQ periplasmic domain mutation results in increased net phosphotransfer to PhoP .
"
1523,1524,633.txt,3,5,4,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Mus sp.,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;mice,Salmonella enterica;Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Inactivation of the phoP or levels of the PhoP-activated genes increased , phoQ genes renders Salmonella enterica serovar reached a peak that was lower than that obtained Typhimurium five orders of magnitude less when Salmonella was induced at 50 mM Mg2 + virulent for mice and unable to proliferate within ( except for the mgtA gene , which reached the phagocytic cells ( 4-6 ) .
"
1524,1525,633.txt,4,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhimurium strains with mutations in phoQ that have variable expression of PhoP-activated genes ( pag ) were constructed to study GPL regulation .
"
1525,1526,633.txt,5,9,1,Salmonella;Salmonella;Salmonella;Salmonella;Salmonella;Salmonella,S. enterica;enterica;S. enterica;enterica;S. enterica;enterica,Salmonella,"A S. enterica strain expressing PhoQ ( N67D , E112D ) from its normal chromosomal location induced the PhoP-activated phoP gene like the isogenic strain with the wild-type S. enterica phoQ gene ( Fig. 3A ) ; this result argues that these periplasmic residues are not essential for the response to acidic pH. The PhoQ proteins from both S. enterica and S. bongori harbor a histidine residue at position 157 ."
1526,1527,1614.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"that McbR are both able to induce expression of the yciGFE locus in E. coli K-12
"
1527,1528,1614.txt,2,2,1,Salmonella,Salmonella,Salmonella,that McbR are both able to induce expression of the yciGFE locus in Salmonella
1528,1529,1166.txt,1,1,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) ."
1529,1530,1600.txt,1,3,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by the AraC/XylS-like regulators RamA ."
1530,1531,1628.txt,1,1,1,unidentified,unknown,unidentified,"A previous study concluded that FadD positively regulates hilA expression in the absence of external LCFAs by an unknown FadR-independent mechanism .
"
1531,1532,357.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1532,1533,1827.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1533,1534,1198.txt,1,1,2,Salmonella;Salmonella;Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;Salmonella;Salmonella-specific;plasmid,Salmonella;unidentified plasmid,"Evaluation of the specificity o Salmonella P using various intestinal bacterial species * f CR primers virulence gene , Salmonella enterotoxin gene ( stn ) , invA gene , Fur-regulated gene , histidine transport operon , junction between SipB and SipC virulence genes , Salmonella-specific repetitive DNA fragment , and multiplex targeting invA gene and spvC gene of the virulence plasmid .
"
1534,1535,1198.txt,2,2,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) ."
1535,1536,1832.txt,1,3,1,unidentified plasmid,plasmid,unidentified plasmid,"Among kanamycin-resistant tranductants , the presence of the lexA ( Ind ) mutation was confirmed through β-galactosidase assay after introduction of the pGE108 plasmid ( Table 2 ) which contains a LexA-regulated cea ∷ lacZ fusion ( Salles et al. , 1987 ) .
"
1536,1537,430.txt,1,2,2,Escherichia coli;Salmonella;Escherichia coli;Salmonella,E. coli;Salmonella;E. coli;Salmonella,Escherichia coli;Salmonella,"The highly divergent PmrD protein is responsible for this phenotype as replacement of the E. coli pmrD gene by its Salmonella counterpart resulted in an E. coli strain that transcribed PmrA-activated genes and displayed poly-myxin B resistance under the same conditions as Salmonella .
"
1537,1538,430.txt,2,3,2,Escherichia coli;Salmonella;Escherichia coli,E. coli;Salmonella;E. coli,Escherichia coli;Salmonella,"This behavior is due to the highly divergent PmrD protein ( Figs. 6 and 7 ) , because replacement of the E. coli pmrD gene by the Salmonella pmrD gene endowed E. coli with the ability to transcribe the PmrA-activated pbgP gene and to exhibit resistance to polymyxin B in response to the low Mg2 signal ( Fig. 3 ) ."
1538,1539,356.txt,1,1,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , Nore , F. 1997 Relationships between H-NS , sigma S , growt phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1539,1540,356.txt,2,2,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , Nore , F. 1997 Relationships between H-NS , sigma S , Spv phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1540,1541,356.txt,3,3,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , L , F. 1997 Relationships between H-NS , sigma S , growt phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1541,1542,356.txt,4,4,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , L , F. 1997 Relationships between H-NS , sigma S , Spv phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1542,1543,356.txt,5,5,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , Kowart , F. 1997 Relationships between H-NS , sigma S , growt phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1543,1544,356.txt,6,6,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , Kowart , F. 1997 Relationships between H-NS , sigma S , Spv phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1544,1545,356.txt,7,7,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , F , F. 1997 Relationships between H-NS , sigma S , growt phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1545,1546,356.txt,8,8,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schae ¡ er , F , F. 1997 Relationships between H-NS , sigma S , Spv phase in the control of spvR , the regulatory gene of the Salmonella dublin virulence plasmid .
"
1546,1547,356.txt,9,10,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , Norel , F. Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1547,1548,356.txt,10,12,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schaeffer , F. , Kowarz , L. , , F. Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1548,1549,356.txt,11,14,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Norel , F. Relationships between H-NS S phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1549,1550,356.txt,12,16,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1550,1551,356.txt,13,18,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1551,1552,356.txt,14,20,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule V , Schaeffer F , Kowarz L , Norel F. Relationships between H-NS , sigma S , rowth phase in the control of spvR , the regulatory gene of he Salmonella plasmid virulence .
"
1552,1553,356.txt,15,22,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule V , Schaeffer F , Kowarz L , Norel F. Relationships between H-NS , sigma S , pvR phase in the control of spvR , the regulatory gene of he Salmonella plasmid virulence .
"
1553,1554,356.txt,16,24,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1554,1555,356.txt,17,26,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1555,1556,356.txt,18,28,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , Norel , F. Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1556,1557,356.txt,19,30,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schaeffer , F. , Kowarz , L. , , F. Relationships between H-NS , sigma S , growth phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence ."
1557,1558,342.txt,1,23,1,Terfezia pini,to 40,Terfezia pini,"Production of HilC induced expression of hilA ~ 120-fold , while RtsA induced expression of hilA 30-to 40-fold , similar to previously reported values .
"
1558,1559,342.txt,2,33,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RtsA are central activators of hilA expression ( Ellermeier et al. , 2005 ; 2001 ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1559,1560,342.txt,3,34,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RtsA are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lee ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1560,1561,342.txt,4,35,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RtsA are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lucas ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1561,1562,1629.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Previously , a Salmonella enterica sero-var Typhimurium phoP locus mutant ( pho24 ) was isolated that constitutively expressed PhoP-activated genes ( pag ) and repressed PhoP-repressed genes ( prg ) ( 21 , 24 ) .
"
1562,1563,1629.txt,2,7,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Inactivation of the phoP or levels of the PhoP-activated genes increased , phoQ genes renders Salmonella enterica serovar reached a peak .
"
1563,1564,1167.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"While it may be tempting to speculate that repression of cadA transcription by Fis may represent a step in the expression of virulence in S. typhimurium , it is not known if lysine decarboxylase activity plays any role in S. typhimurium virulence ."
1564,1565,1601.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both the cadC in SCV of macrophages .
"
1565,1566,1601.txt,2,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both the cadC in the Salmonellacontaining vacuole of macrophages .
"
1566,1567,1615.txt,1,1,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Escherichia coli;S. Typhi;Typhi,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"On the other hand , the transcriptional regulator Crp , previously described as an activator of hlyE transcription in Escherichia coli , is involved in transcriptional repression of hlyE in S. Typhi .
"
1567,1568,1615.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"The Crp regulator is involved in transcriptional repression of S. Typhi hlyE Crp is a transcriptional regulator previously reported to be an activator of hlyE transcription in E. coli .
"
1568,1569,1615.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"increased b-galactosidase activity in comparison with the parental strain _ suggesting that Crp is involved in downregulation of hlyE transcription in S. Typhi
"
1569,1570,1615.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"All these results together suggest that Crp is involved in downregulation of hlyE in S. Typhi .
"
1570,1571,1615.txt,5,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"In addition , we found that Crp is involved in downregulation of hlyE in S. Typhi .
"
1571,1572,1615.txt,6,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Crp is involved in transcriptional repression of S. Typhi hlyE .
"
1572,1573,1615.txt,7,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Nevertheless , addition of glucose to the growth medium results in a decrease of hlyE mRNA in S. Typhi Δcrp mutant , suggesting that there is another factor related to catabolite-repression , different from CRP , involved in down-regulation of hlyE in S. Typhi .
"
1573,1574,1615.txt,8,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Nevertheless , genetic experiments showed that CRP participates in the negative regulation of hlyE in S. Typhi since crp deletion led to increased β-galactosidase activit .
"
1574,1575,1615.txt,9,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , CRP might repress hlyE expression by repressing rpoS in S. Typhi ."
1575,1576,168.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Levy demonstrated that when the AcrAB-TolC pump in Escherichia coli is inhibited , cellular metabolites accumulate , inactivating AcrR and/or upregulating marA expression .
"
1576,1577,168.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Levy demonstrated that when the AcrAB-TolC pump in Escherichia coli is inactivated , cellular metabolites accumulate , inactivating AcrR and/or upregulating marA expression .
"
1577,1578,168.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ruiz demonstrated that when the AcrAB-TolC pump in Escherichia coli is inhibited , cellular metabolites accumulate , inactivating AcrR and/or upregulating marA expression .
"
1578,1579,168.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ruiz demonstrated that when the AcrAB-TolC pump in Escherichia coli is inactivated , cellular metabolites accumulate , inactivating AcrR and/or upregulating marA expression ."
1579,1580,626.txt,1,2,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"To that purpose , RpoS was inactivated by introducing mutation rpoS : : Apr into the crp + spoT : : Apr-carry-ing strains DA2260 , respectively .
"
1580,1581,626.txt,2,3,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"To that purpose , RpoS was inactivated by introducing mutation rpoS : : Apr into the crp + spoT : : Apr-carry-ing strains DA2246 , respectively .
"
1581,1582,626.txt,3,4,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"To that purpose , RpoS was inactivated by introducing mutation rpoS : : Apr into the crp + spoT : : Apr-carry-ing strains DA2247 , respectively .
"
1582,1583,7.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1583,1584,1359.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"crl transcription in E. coli W3110 is repressed by Crl -LRB- by more than 10-fold -RRB- .
"
1584,1585,55.txt,1,11,1,Felis catus,cat,Felis catus,"The expression analysis of ssrAB-cat 10 fusions in the hilD mutant revealed that consecutive deletions of the 240 / FIG 3 Analysis of the cis-acting sequences required for the HilD-mediated regulation of ssrAB .
"
1585,1586,55.txt,2,12,1,Felis catus,cat,Felis catus,"The expression analysis of ssrAB-cat 69 revealed that consecutive deletions of the 240 / FIG 3 Analysis of the cis-acting sequences required for the HilD-mediated regulation of ssrAB .
"
1586,1587,55.txt,3,13,1,Felis catus,cat,Felis catus,"The expression analysis of ssrAB-cat 119 revealed that consecutive deletions of the 240 / FIG 3 Analysis of the cis-acting sequences required for the HilD-mediated regulation of ssrAB .
"
1587,1588,55.txt,4,14,1,Felis catus,cat,Felis catus,"The expression analysis of ssrAB-cat 240 revealed that consecutive deletions of the 240 / FIG 3 Analysis of the cis-acting sequences required for the HilD-mediated regulation of ssrAB .
"
1588,1589,55.txt,5,15,1,Felis catus,cat,Felis catus,"The expression analysis of the ssrAB-cat 336 revealed that consecutive deletions of the 240 / FIG 3 Analysis of the cis-acting sequences required for the HilD-mediated regulation of ssrAB .
"
1589,1590,801.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SpvR regulation of transcription of Salmonella typhimurium spvABC virulence genes .
"
1590,1591,801.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SpvR regulation of transcription of Salmonella typhimurium spvABC virulence genes .
"
1591,1592,801.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SpvR regulation of transcription of Salmonella typhimurium spvABC virulence genes .
"
1592,1593,801.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Norel , F. Growth SpvR regulation of transcription of Salmonella typhimurium spvABC virulence genes .
"
1593,1594,801.txt,5,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Coynault , C. , Robbe-Saule , V. , Popoff , M.Y. , SpvR regulation of transcription of Salmonella typhimurium spvABC virulence genes ."
1594,1595,41.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"Both hypotheses need to be tested , but we already know that expression of sdiA from a plasmid increases the expression of SdiA-regulated genes in the absence of signal ( 1 , 22 ) .
"
1595,1596,41.txt,2,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Given that the Salmo-nella promoters are confirmed to respond to chromosomal sdiA and AHL , whereas the ftsQP2 promoter is not , we suspect that the binding of SdiA to the ftsQP2 promoter may not be physiologically relevant .
"
1596,1597,41.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Bos taurus,S. Typhimurium;Typhimurium;cow,Bos taurus;Salmonella enterica subsp. enterica serovar Typhimurium,"Despite the regulation of putative virulence genes by SdiA , we have previously reported that an sdiA mutant of S. Typhimurium is not attenuated in cow models of infection .
"
1597,1598,41.txt,4,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Gallus gallus,S. Typhimurium;Typhimurium;chicken,Gallus gallus;Salmonella enterica subsp. enterica serovar Typhimurium,"Despite the regulation of putative virulence genes by SdiA , we have previously reported that an sdiA mutant of S. Typhimurium is not attenuated in chicken .
"
1598,1599,41.txt,5,5,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus musculus,S. Typhimurium;Typhimurium;mouse,Mus musculus;Salmonella enterica subsp. enterica serovar Typhimurium,"Despite the regulation of putative virulence genes by SdiA , we have previously reported that an sdiA mutant of S. Typhimurium is not attenuated in mouse .
"
1599,1600,41.txt,6,6,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Despite the regulation of putative virulence genes by SdiA , a sdiA mutant of S. enterica sv .
"
1600,1601,41.txt,7,9,1,Mus sp.;Mus sp.,mice;mice,Mus sp.,"In mice , infection with a sdiA mutant resulted in increased bacterial loads in the livers of infected mice indicating that SdiA may be a negative regulator of virulence .
"
1601,1602,41.txt,8,10,1,Mus sp.;Mus sp.,mice;mice,Mus sp.,"In mice , infection with a sdiA mutant resulted in increased fecal shedding in the livers of infected mice indicating that SdiA may be a negative regulator of virulence .
"
1602,1603,41.txt,9,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To test this hypothesis , we determined that S. typhimurium encodes SdiA regulated by sdiA ."
1603,1604,2122.txt,1,9,1,Salmonella,Salmonella,Salmonella,that the independent regulation of the tufB gene in Salmonella involves Rho-dependent transcription termination
1604,1605,197.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium;mice;S. typhimurium;typhimurium,Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium,"In this investigation , we observed that ( i ) the in-vitro generation times of flgM mutant and wild-type strains of S. typhimurium were indistinguishable , as were the amounts of flagellin produced by the strains ; ( ii ) the 50 % lethal doses of fliA mutant and wild-type strains of S. typhimurium were similar in orally infected mice ; and ( iii ) inactivation of the FliA-regulated flagellin gene fliC in an flgM S. typhimurium mutant resulted in a virulent phenotype .
"
1605,1606,197.txt,2,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium;mice;S. typhimurium;typhimurium,Mus sp.;Salmonella enterica subsp. enterica serovar Typhimurium,"In this investigation , we observed that ( i ) the in-vitro generation times of flgM mutant and wild-type strains of S. typhimurium were indistinguishable , as were the amounts of flagellin produced by the strains ; ( ii ) the 50 % lethal doses of fliA mutant and wild-type strains of S. typhimurium were similar in orally infected mice ; and ( iii ) inactivation of the FliA-regulated flagellin gene fliC in an flgM S. typhimurium mutant resulted in a virulent phenotype ."
1606,1607,829.txt,1,1,5,Salmonella;Salmonella enterica;Salmonella;Escherichia coli;Cornu aspersum;Cantareus apertus,Salmonella;Salmonella enterica;enterica;Escherichia coli;helix;helix,Cantareus apertus;Salmonella;Salmonella enterica;Cornu aspersum;Escherichia coli,"Inactivation of the RluD Pseudouridine Synthase Has Minimal Effects on Ribosome Function in Salmonella enterica Biochemistry , Brown University , 60 Olive Street , Providence , Rhode Island 029122 The Escherichia coli rluD gene encodes a pseudouridine synthase responsible for the pseudouridine ( ) modifications at positions 1911 , 1915 , and 1917 in helix 69 of 23S rRNA .
"
1607,1608,829.txt,2,2,5,Salmonella;Salmonella enterica;Salmonella;Escherichia coli;Cornu aspersum;Cantareus apertus,Salmonella;Salmonella enterica;enterica;Escherichia coli;helix;helix,Cantareus apertus;Salmonella;Salmonella enterica;Cornu aspersum;Escherichia coli,"Inactivation of the RluD Pseudouridine Synthase Has Minimal Effects on Growth Function in Salmonella enterica Biochemistry , Brown University , 60 Olive Street , Providence , Rhode Island 029122 The Escherichia coli rluD gene encodes a pseudouridine synthase responsible for the pseudouridine ( ) modifications at positions 1911 , 1915 , and 1917 in helix 69 of 23S rRNA ."
1608,1609,1371.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
1609,1610,2095.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene ; for example , expression of both csiD genes in E. coli is stimulated by H-NS ."
1610,1611,752.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene whose expression is positively regulated by H-NS ; for example , expression of both the malT and csiD genes in E. coli is stimulated by H-NS ( 8 , 14 ) .
"
1611,1612,752.txt,2,11,1,Salmonella,Salmonella,Salmonella,"Research in Crp-dependent transcriptional control of hlyE genes : role of environmental conditions Juan A. Fuentes , Matıas R. Jofré , Nicolás A. Villagra , Guido C. Mora * Laboratorio de Microbiologıa , Facultad de Ciencias Biológicas y Facultad de Medicina , Universidad Andres Bello , República 217 , Santiago de Chile , Chile Abstract A novel pathogenicity island , SPI-18 , carries ron , encoding virulence-factors in Salmonella .
"
1612,1613,752.txt,3,13,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Research in Crp-dependent transcriptional control of Salmonella Typhi taiA : role of environmental conditions Juan A. Fuentes , Matıas R. Jofré , Nicolás A. Villagra , Guido C. Mora * Laboratorio de Microbiologıa , Facultad de Ciencias Biológicas y Facultad de Medicina , Universidad Andres Bello , República 217 , Santiago de Chile , Chile Abstract A novel pathogenicity island , SPI-18 , carries rries the taiA-hlyE .
"
1613,1614,752.txt,4,14,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Nevertheless , genetic experiments showed that CRP participates in the negative regulation of hlyE in S. Typhi since crp deletion led to increased β-galactosidase activit .
"
1614,1615,752.txt,5,15,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Altogether , these results suggest that CRP are able to repress the rpoS expression by direct binding , thereby regulating hlyE expression in S. Typhi .
"
1615,1616,752.txt,6,17,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"RpoS integrates CRP to control Salmonella Typhi hlyE expression .
"
1616,1617,752.txt,7,18,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,RpoS integrates CRP to control Salmonella Typhi hlyE expression .
1617,1618,2042.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1618,1619,961.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1619,1620,975.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"YncC/McbR are also able to bind to the promoter region of the E. coli K-12 yciGFE genes .
"
1620,1621,975.txt,2,2,1,Salmonella,Salmonella,Salmonella,"However , the sequence , the length , , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR .
"
1621,1622,975.txt,3,3,1,Salmonella,Salmonella,Salmonella,"However , the position of H-NS binding regions , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR .
"
1622,1623,975.txt,4,4,1,Salmonella,Salmonella,Salmonella,"However , the position of the McbR/YncC , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by YncC/McbR ."
1623,1624,1211.txt,1,4,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in Fig. 4 .
"
1624,1625,1211.txt,2,5,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in an independent manne .
"
1625,1626,1211.txt,3,6,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in Fig. 4 .
"
1626,1627,1211.txt,4,7,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in an independent manne .
"
1627,1628,1211.txt,5,8,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in Fig. 4 .
"
1628,1629,1211.txt,6,9,1,unidentified plasmid,plasmid,unidentified plasmid,"Measurements of β-galactosidase activities of the plasmid-borne lac fusions showed that LeuO regulates expression of the P hilE promoters in an independent manne .
"
1629,1630,791.txt,1,9,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,S. Typhimurium;S. Typhimurium SL1344;Typhimurium;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium,"In this work , by applying a clustering method to S. Typhimurium SL1344 global expression data from the COLOMBOS database , we show that most of the known genes regulated by HilD , including the flagellar/chemot-axis genes , are indeed co-expressed with SPI-1 ; moreover , nine novel genes were identified : gtgE .
"
1630,1631,791.txt,2,10,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL4247-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1631,1632,791.txt,3,11,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of SL3812-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1632,1633,791.txt,4,12,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of lpxR-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1633,1634,791.txt,5,13,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of sinR-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1634,1635,791.txt,6,14,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of phoH-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1635,1636,791.txt,7,15,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce the expression of gtgE-cat ; consistently , HilD bound to the regulatory regions of gtgE .
"
1636,1637,791.txt,8,16,2,Felis catus;Escherichia coli,cat;E. coli,Felis catus;Escherichia coli,"Additionally , we show that HilD can induce SL1896-cat , transcriptional-fusions , in the E. coli MC4100 strain ; consistently , HilD bound to the regulatory regions of gtgE .
"
1637,1638,791.txt,9,17,1,Felis catus,cat,Felis catus,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of FlhDC ; consistently , HilD bound to the regulatory regions of gtgE .
"
1638,1639,791.txt,10,18,2,Felis catus;Salmonella;Salmonella,cat;Salmonella;Salmonella-specific,Felis catus;Salmonella,"Additionally , we show that HilD can induce SL1896-cat , thus in the absence of other Salmonella-specific regulators ; consistently , HilD bound to the regulatory regions of gtgE .
"
1639,1640,791.txt,11,24,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the gtgE genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1640,1641,791.txt,12,25,1,Salmonella,Salmonella,Salmonella,"Whether the regulation by HilD implies that the gtgE genes also have a role in the Salmonella invasion of host cells , as for most other genes regulated by HilD , needs to be investigated .
"
1641,1642,1205.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Gallus gallus,S. Typhimurium;Typhimurium;chicken,Gallus gallus;Salmonella enterica subsp. enterica serovar Typhimurium,"a DphoN : : tviA mutant were grown in tryptone yeast extract broth containing 0.3 M NaCl and subsequently transferred into tissue culture medium Expression of tviA in S. Typhimurium results in increased translocation to the spleen in a chicken model By evading detection through sentinels of the intestinal immune system , TviA-mediated flagellin repression might prevent induction of mucosal barrier functions orchestrated by proinflammatory signals .
"
1642,1643,1205.txt,2,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Gallus gallus,S. Typhimurium;Typhimurium;S. Typhimurium;Typhimurium;chicken,Gallus gallus;Salmonella enterica subsp. enterica serovar Typhimurium,"A S. Typhimurium DphoN mutant : : tviA mutant were grown in tryptone yeast extract broth containing 0.3 M NaCl and subsequently transferred into tissue culture medium Expression of tviA in S. Typhimurium results in increased translocation to the spleen in a chicken model By evading detection through sentinels of the intestinal immune system , TviA-mediated flagellin repression might prevent induction of mucosal barrier functions orchestrated by proinflammatory signals .
"
1643,1644,1563.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1644,1645,1563.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1645,1646,2297.txt,1,1,1,unidentified,unidentified,unidentified,"Mutations in ams , hha and a previously unidentified PhoP-activated gene ( pag ) lead to increased hilA expression ( Fahlen et al. , 2000 , 2001 ) ."
1646,1647,544.txt,1,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"In S. enterica the global regu-2 MarA regulate the acrAB operon by binding to mar/sox boxes .
"
1647,1648,544.txt,2,4,1,Salmonella,Salmonella,Salmonella,"Other regulators of MarA did not contrib-ute to acrAB induction by indole in Salmonella .
"
1648,1649,544.txt,3,5,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of acrAB is controlled by the homologous proteins MarA .
"
1649,1650,544.txt,4,7,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by MarA .
"
1650,1651,2254.txt,1,1,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1651,1652,2254.txt,2,2,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1652,1653,2254.txt,3,3,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1653,1654,2254.txt,4,4,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1654,1655,2254.txt,5,5,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1655,1656,2254.txt,6,6,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1656,1657,2254.txt,7,7,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1657,1658,2254.txt,8,8,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg sipB ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many ."
1658,1659,1985.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Therefore , SirA appears to be a major regulator of Salmonella intestinal virulence , whereas SdiA regulates accessory factors -LRB- rck , pefI , srgA -RRB- ."
1659,1660,1013.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In summary , we have shown that the H-NS-mediated regulation of hlyE expression in E. coli K-12 is more complex than was previously suggested because H-NS can negatively to hlyE expression .
"
1660,1661,1013.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In summary , we have shown that the H-NS-mediated regulation of hlyE expression in E. coli K-12 is more complex than was previously suggested because H-NS can contribute positively ."
1661,1662,1775.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by ArgR was evaluated by generating three isogenic S. Typhi deletion mutants of argR .
1662,1663,593.txt,1,1,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ompR .
"
1663,1664,593.txt,2,2,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : ompR ."
1664,1665,1981.txt,1,1,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"Transcription of E. coli topA is driven by the interplay of at least four transcription start sites , allowing FIS to be both a repressor of E. coli topA expression .
"
1665,1666,1981.txt,2,2,2,unidentified plasmid;Escherichia coli;unidentified plasmid,plasmid;E. coli;plasmid,Escherichia coli;unidentified plasmid,"Although topA promoter function has routinely been studied using plasmid-based systems , our results indicate that in E. coli the expression of plasmid-borne PtopAEc is enhanced by FIS whereas the chromosomal copy of the promoter is repressed by FIS -LRB- compare 4A -RRB- .
"
1666,1667,1981.txt,3,3,2,unidentified plasmid;Escherichia coli;unidentified plasmid,plasmid;E. coli;plasmid,Escherichia coli;unidentified plasmid,"Although topA promoter function has routinely been studied using plasmid-based systems , our results indicate that in E. coli the expression of plasmid-borne PtopAEc is enhanced by FIS whereas the chromosomal copy of the promoter is repressed by FIS -LRB- compare Figs 3A -RRB- ."
1667,1668,1759.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The ugtL gene is part of a Salmonella-specific gene cluster that includes the PhoP-activated pcgL gene ( 22 ) and the sifB gene , which is expressed in response to the low Mg2 conditions that normally activate the PhoP/PhoQ system ( 23 ) ."
1668,1669,2250.txt,1,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"The results of our experiments concur with the concept that H-NS represses the expression of ompS1 in Salmonella serovar Typhi .
"
1669,1670,2250.txt,2,5,6,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmo;Salmo;Salmo;Salmo;Salmo-nella;Typhimurium,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris;Salmonella enterica subsp. enterica serovar Typhimurium,Previous studies also showed that ompS1 are repressed by H-NS in Salmo-nella serovar Typhimurium .
1670,1671,1995.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"In Escherichia coli , sbp is positively regulated by Cbl , a transcriptional regulator with 60 % amino-acid similarity to CysB , involved in the regulation of cysteine biosynthesis from organic sulfur sources ."
1671,1672,1003.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"STM0306 , a fourth PhoPQ-regulated gene that is involved in pathogenicity , is a paralog of the S. typhimurium SapA protein , which was shown to play a role in virulence ( Parra-Lopez et al. 1993 ) ."
1672,1673,1771.txt,1,1,6,Escherichia coli;Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,E. coli;Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris;Escherichia coli,"This result is surprising because : ( i ) E. coli encodes homologues of the PhoP PhoQ and PmrA PmrB systems , the PmrD protein , as well as the PmrA-regulated genes mediating the LPS modifications required for polymyxin B resistance ( 24 ) ; ( ii ) its PhoP PhoQ system also responds to Mg2 ( 25 ) ; and ( iii ) mutations in its pmrA gene produce strains with the same phenotypes as Salmo-nella pmrA mutants ( 8 , 12 ) ."
1673,1674,1017.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
1674,1675,568.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhimurium;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"3 4 5 12 Salmonella serovar Typhi gi 16761966 6.59 65.66 351.3 / 0 6 848.4 / 0 Salmonella serovar Typhi Salmonella serovar Typhimurium Salmonella serovar Typhi Salmonella serovar Typhi 32 44 gi 16759110 gi 16764195 7.20 5.17 47.51 19.80 7 57.7 / 261.2 54 8 123.8 / 287.5 38/222 .4 gi 16502500 gi 16503032 5.17 5.15 21.50 23.2 7.21 e 20 13 20 35 49.6 / 0 103.1 / 0 123.2 / 0-66/0 Salmonella serovar Typhi Salmonella serovar Typhi Salmonella serovar Typhi Salmonella serovar Typhi gi 16760937 gi 16760937 gi 16760937 gi 16504014 5.09 5.06 5.03 6.12 51.89 52.45 52.47 51.89 SS-III -RRB- / OD of Salmonella serovar Typhi leuO FIG. 2 166 FIG. 2 -- Continued 166 The proteomic data revealed that LeuO represses the expression of tpx .
"
1675,1676,2293.txt,1,3,1,Salmonella,Salmonella,Salmonella,"These data confirm previous findings with regard to hmp , and additionally demonstrate that the NsrR-regulated ytfE and STM1808 genes contribute to Salmonella virulence .
"
1676,1677,2293.txt,2,4,1,Mus sp.,mice,Mus sp.,"We have identified a novel NsrR-regulated gene designated STM1808 , and demonstrated a role for specific NsrR-regulated genes in promoting growth during nitrosative-stress in-vitro ( hmp , STM1808 , ygbA and hcp ) and during systemic infection of mice in-vivo ( hmp , STM1808 , ytfE ) .
"
1677,1678,2293.txt,3,5,1,Mus sp.,mice,Mus sp.,"We have identified a novel NsrR-regulated gene designated STM1808 , and demonstrated a role for specific NsrR-regulated genes in promoting growth during nitrosative-stress in-vitro ( hmp , STM1808 , ygbA and hcp ) and during systemic infection of mice in-vivo ( hmp , STM1808 , ytfE ) .
"
1678,1679,2293.txt,4,6,1,Salmonella,Salmonella,Salmonella,"STM1808 and ytfE can be added to hmp as NsrR-regulated loci that contribute to Salmonella virulence ( Fig. 6 ) .
"
1679,1680,2293.txt,5,7,1,Mus sp.,mice,Mus sp.,"Our findings include the identification of a novel NsrR-regulated gene ( STM1808 ) that is important for nitrosative-stress resistance and virulence in mice .
"
1680,1681,1942.txt,1,1,1,unidentified,unknown,unidentified,A tentative hypothesis is that asmA mutations might activate a MarA-regulated efflux pump hitherto unknown to transport bile-salts .
1681,1682,1956.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of adrA gene the upregulation of expression of lpfE genes
"
1682,1683,1956.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Typhimurium cells _ treated with polyphenol , suggesting that the CsgD can regulate the transcription of csgDEFG , csgBA operons the upregulation of expression of lpfE genes"
1683,1684,554.txt,1,11,1,Salmonella,Salmonella,Salmonella,"It was reported that hlyE could be activated by SlyA , an important regulator of virulence genes in Salmonella ."
1684,1685,226.txt,1,3,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1685,1686,226.txt,2,4,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1686,1687,226.txt,3,5,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1687,1688,226.txt,4,7,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1688,1689,226.txt,5,8,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1689,1690,226.txt,6,9,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1690,1691,226.txt,7,10,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1691,1692,226.txt,8,11,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1692,1693,226.txt,9,12,1,Salmonella,Salmonella,Salmonella,"Singer , H.M. , Ku C. , Deditius , J.A. , Hughes , K.T. , The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1693,1694,226.txt,10,13,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1694,1695,226.txt,11,14,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1695,1696,226.txt,12,15,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1696,1697,226.txt,13,16,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1697,1698,226.txt,14,17,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium,"Previously , by using ChIP-qPCR , it was found that HilD binds in-vivo to DNA regions -RRB- S. Typhimurium 14028s genes ; furthermore , it was shown that HilD can induce the expression of a lpxR-lacZ translational fusion in flhDC + 31 .
"
1698,1699,226.txt,15,18,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium,"Previously , by using ChIP-seq , it was found that HilD binds in-vivo to DNA regions -RRB- S. Typhimurium 14028s genes ; furthermore , it was shown that HilD can induce the expression of a lpxR-lacZ translational fusion in flhDC + 31 .
"
1699,1700,226.txt,16,19,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,S. Typhimurium;S. Typhimurium 14028s;Typhimurium;14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Salmonella enterica subsp. enterica serovar Typhimurium,"Previously , by using chromatin immunoprecipitation-sequencing , it was found that HilD binds in-vivo to DNA regions -RRB- S. Typhimurium 14028s genes ; furthermore , it was shown that HilD can induce the expression of a lpxR-lacZ translational fusion in flhDC + 31 .
"
1700,1701,226.txt,17,20,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1701,1702,226.txt,18,21,1,Salmonella,Salmonella,Salmonella,"The Salmonella Spi1 virulence regulatory protein HilD directly activates transcription of the flagellar master operon flhDC .
"
1702,1703,226.txt,19,22,1,Salmonella,Salmonella,Salmonella,"Furthermore , HilD acts as a direct activator of flhDC expression , strengthening the transcriptional cross talk between the SPI-1 regulons in Salmonella .
"
1703,1704,226.txt,20,23,1,Salmonella,Salmonella,Salmonella,"Furthermore , HilD acts as a direct activator of flhDC expression , strengthening the transcriptional cross talk between the flagellar regulons in Salmonella ."
1704,1705,971.txt,1,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overcoming the temperature regulation of Salmonella serovar Typhimurium UMR1 by mutations in STM1703 demonstrated that both gene products act as suppressors of the rdar morphotype expression upstream of CsgD at 37 °C .
"
1705,1706,2046.txt,1,1,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA .
"
1706,1707,2046.txt,2,2,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA .
"
1707,1708,2046.txt,3,3,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA .
"
1708,1709,2046.txt,4,4,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA .
"
1709,1710,2046.txt,5,5,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Grob , P. , and Guiney , D. G. In Vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA , J. Bacteriol .
"
1710,1711,2046.txt,6,6,1,Starmerella aceti,to 125,Starmerella aceti,"Gel mobility-shift assays revealed that the SpvR fusion proteins were able to bind to 125-and 147-bp DNA fragments of the spvA , respectively .
"
1711,1712,2046.txt,7,7,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvA .
"
1712,1713,2046.txt,8,10,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Grob P , Guiney DG In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter region of spvA .
"
1713,1714,1201.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"the E. coli asr gene where the RstA protein bound at a site between 68 upstream of the asr promoter
"
1714,1715,1201.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,the E. coli asr gene where the RstA protein bound at a site between 55 upstream of the asr promoter
1715,1716,795.txt,1,1,1,Escherichia coli;Escherichia coli,Escherichia coli;Escherichia coli,Escherichia coli,"The cellular concentration of the rs subunit of RNA polymerase in Escherichia coli is controlled at Hu , R. Regulation in the rpoS regulon of Escherichia coli .
"
1716,1717,795.txt,2,2,1,Escherichia coli;Escherichia coli,Escherichia coli;Escherichia coli,Escherichia coli,"The cellular concentration of the rs subunit of RNA polymerase in Escherichia coli is controlled at Hu , R. Regulation in the rpoS regulon of Escherichia coli ."
1717,1718,959.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1718,1719,959.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1719,1720,781.txt,1,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1720,1721,781.txt,2,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1721,1722,781.txt,3,9,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1722,1723,781.txt,4,10,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to various environmental stimuli due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1723,1724,781.txt,5,11,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1724,1725,781.txt,6,12,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1725,1726,781.txt,7,13,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1726,1727,781.txt,8,14,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1727,1728,781.txt,9,15,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1728,1729,781.txt,10,16,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1729,1730,781.txt,11,17,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1730,1731,781.txt,12,18,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in S. Typhimurium , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1731,1732,781.txt,13,19,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1732,1733,781.txt,14,20,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to osmolality due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1733,1734,781.txt,15,21,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1734,1735,781.txt,16,22,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to pH due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1735,1736,781.txt,17,23,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1736,1737,781.txt,18,24,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to temperature due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1737,1738,781.txt,19,25,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgBAC operons .
"
1738,1739,781.txt,20,26,1,Escherichia coli,E. coli,Escherichia coli,"CsgD levels were undetected H-NS differentially regulate csgD expression Both in E. coli , the expression of csgD is sensitive to starvation due to the action of upstream global regulators at the intergenic region of the csgDEFG operons .
"
1739,1740,781.txt,21,27,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Furthermore , H-NS , was also known to regulate the expression of csgD in S. Typhimurium .
"
1740,1741,781.txt,22,28,1,Escherichia coli,E. coli,Escherichia coli,"Furthermore , H-NS , was also known to regulate the expression of csgD in E. coli .
"
1741,1742,1215.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Cloning and nucleotide sequence of the cyclic-AMP-receptor-protein-regulated Salmonella typhimurium pepE gene and crystallization of its product , an α-aspartyl dipeptidase ."
1742,1743,1598.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,RpoS stabilization where PhoPQ participates by serving as a transcriptional activator of yaiB gene in S. Typhimurium
1743,1744,2091.txt,1,2,1,unidentified,unknown,unidentified,"Our present model for ompS2 expression implies that LeuO relieves repression by antagonizing the effect of an unknown repressor .
"
1744,1745,2126.txt,1,1,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Salmonella;Typhi;plasmid;Salmonella;Typhi;plasmid,unidentified plasmid;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Bacterial strains IMSS-II ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrc12 ) and IMSS-III ( Salmonella serovar Typhi IMSS-1 harboring plasmid pFMTrcleuO-50 ) were independently transformed with fusions of each of the LeuO-regulated genes ( pKK232-9 [ STY3070 ] , pKK232-9 [ assT ] , pKK232-9 [ ompS1 ] , pKK232-9 [ ompS2 ] , pKK232-9 [ tpx ] , pKK232-9 [ ompX ] , and pKK232-9 [ STY1978 ] ) to generate individual strains containing the LeuO regulator , as well as the promoter region of the LeuO-dependent gene ."
1745,1746,805.txt,1,1,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
1746,1747,805.txt,2,2,1,unidentified,not shown,unidentified,The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
1747,1748,1413.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1748,1749,79.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"A.H. Yoo , S.W. Kim , J.E. Yu , Y.H. Kim , J. Cha , J. Oh , S.K. Eo , J.H. Lee , H.Y. Kang , Requirement of Fur for full induction of dps expression in Salmonella enterica serovar typhimurium , J. Microbiol .
"
1749,1750,839.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"A. Olsen , A. Arnqvist , M. Hammar , S. Sukupolvi , S. Normark , The RpoS sigma factor relieves HNS-mediated transcriptional repression of csgA , the subunit gene of fibronectin-binding curli in Escherichia coli , Mol ."
1750,1751,193.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Identification of the CysB-regulated gene , hslJ , related to the Escherichia coli novobiocin resistance phenotype .
"
1751,1752,193.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Identification of the CysB-regulated gene , hslJ , related to the Escherichia coli novobiocin resistance phenotype .
"
1752,1753,193.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Identification of the CysB-regulated gene , hslJ , related to the Escherichia coli novobiocin resist-ance phenotype ."
1753,1754,1639.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Therefore , SirA appears to be a major regulator of Salmonella intestinal virulence , whereas SdiA regulates other genes of srgB .
"
1754,1755,1836.txt,1,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and Leu positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1755,1756,1836.txt,2,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1756,1757,1836.txt,3,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva E. OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1757,1758,1836.txt,4,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1758,1759,1836.txt,5,6,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1759,1760,1836.txt,6,7,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1760,1761,1836.txt,7,8,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1761,1762,1836.txt,8,9,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and LeuO positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1762,1763,1836.txt,9,10,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1763,1764,1836.txt,10,11,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Calva , E. OmpR and Leu positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
"
1764,1765,1836.txt,11,12,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Calva E. OmpR positively regulate the Salmonella enterica serovar Typhi ompS2 porin gene .
1765,1766,1189.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro SPI-1-inducing conditions .
"
1766,1767,1189.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro high salt .
"
1767,1768,1189.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fnr has been previously reported to be a negative regulator of hilA in S. Typhimurium , as loss of Fnr caused a 1.5-to 2-fold increase of hilA expression under in-vitro low O2 .
"
1768,1769,1837.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Dual control by a s32 promoter in concert with a ROSE-like RNA thermometer was also shown for the ibpA genes of Salmonella .
"
1769,1770,1837.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,Dual control by a s32 promoter in concert with a ROSE-like RNA thermometer was also shown for the ibpA genes of E. coli .
1770,1771,390.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1771,1772,390.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1772,1773,151.txt,1,3,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Discussion Inverse correlation between the response regulator OmpR S. enterica serovar Typhimurium CadC is known to act as a repressor of ompR transcription during acid adaptation .
"
1773,1774,151.txt,2,5,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"CadC interacts directly with OmpR Since S. enterica serovar Typhimurium OmpR response re-gulator was shown to induce its own synthesis by binding to its promoter , we hypothesized that CadC could mediate the repression of ompR gene expression by direct interaction with OmpR , sterically hindering binding of OmpR to RNA polymerase .
"
1774,1775,151.txt,3,6,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"CadC interacts directly with OmpR Since S. enterica serovar Typhimurium OmpR response re-gulator was shown to induce its own synthesis by binding to its promoter , we hypothesized that CadC could mediate the repression of ompR gene expression by direct interaction with OmpR , sterically hindering binding of OmpR to its own promoter .
"
1775,1776,145.txt,1,3,3,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Plasmid;S. Typhi;Typhi;GIFU 10007;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,"Plasmid Description Source Strains S. Typhi GIFU 10007 WT-pBAD addition , virulence genes mgtC locus is regulated by the PhoP/PhoQ two-component regulatory system in S. Typhimurium .
"
1776,1777,145.txt,2,4,12,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;bacterium IFAM-2074;Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16;bacterium;bacterium IFAM-1493;bacterium IFAM-3211;bacterium IFAM-3359;bacterium IFAM-3215;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Plasmid;S. Typhi;Typhi;GIFU 10007;bacterium;bacterium;bacterium;bacterium;bacterium;bacterium;bacterium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16;bacterium IFAM-3215;bacterium IFAM-2074;bacterium;bacterium IFAM-1493;Salmonella;bacterium IFAM-3211;Salmonella enterica;bacterium IFAM-3359;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,"Plasmid Description Source Strains S. Typhi GIFU 10007 WT-pBAD addition , virulence genes mgtC locus is regulated by the PhoP/PhoQ two-component regulatory system in the facultative intracellular bacterium Salmonella enterica serovar Typhimurium .
"
1777,1778,145.txt,3,5,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;GIFU 10007;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Salmonella enterica subsp. enterica serovar Typhimurium,"Strain Description Source Strains S. Typhi GIFU 10007 WT-pBAD addition , virulence genes mgtC locus is regulated by the PhoP/PhoQ two-component regulatory system in S. Typhimurium .
"
1778,1779,145.txt,4,6,11,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;bacterium IFAM-2074;Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16;bacterium;bacterium IFAM-1493;bacterium IFAM-3211;bacterium IFAM-3359;bacterium IFAM-3215;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi;GIFU 10007;bacterium;bacterium;bacterium;bacterium;bacterium;bacterium;bacterium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007;Candidatus Saganbacteria bacterium CG08_land_8_20_14_0_20_45_16;bacterium IFAM-3215;bacterium IFAM-2074;bacterium;bacterium IFAM-1493;Salmonella;bacterium IFAM-3211;Salmonella enterica;bacterium IFAM-3359;Salmonella enterica subsp. enterica serovar Typhimurium,"Strain Description Source Strains S. Typhi GIFU 10007 WT-pBAD addition , virulence genes mgtC locus is regulated by the PhoP/PhoQ two-component regulatory system in the facultative intracellular bacterium Salmonella enterica serovar Typhimurium .
"
1779,1780,145.txt,5,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In addition , the mgtC locus , are regulated by the PhoP/PhoQ two-component regulatory system in S. Typhimurium ."
1780,1781,1412.txt,1,1,2,Salmonella;Salmonella;Escherichia coli,S. enterica;enterica;E. coli,Escherichia coli;Salmonella,"In electro-phoretic mobility-shift assays , Fis was found to bind to both gyrB promoters of S. enterica , despite the strong divergence from the E. coli sequence on the part of the former .
"
1781,1782,1412.txt,2,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. Typhimurium;Typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Fis also binds to and represses the promoters of the gyrB genes in both E. coli and S. Typhimurium , resulting in reduced levels of DNA supercoiling .
"
1782,1783,1412.txt,3,3,2,Escherichia coli;Salmonella;Salmonella,E. coli;S. enterica;enterica,Escherichia coli;Salmonella,"In E. coli , FIS binds the gyrB promoters to repress their expression ; similarly , FIS has been found to repress S. enterica gyrB .
"
1783,1784,1374.txt,1,1,1,Salmonella,Salmonella,Salmonella,Other regulators of SdiA did not contrib-ute to acrAB induction by indole in Salmonella .
1784,1785,2.txt,1,2,1,Salmonella,Salmonella,Salmonella,"CysB protein also autoregulates its own synthesis by binding to the cysB promoter as a In Salmonella , amino-acid biosynthesis is tightly regulated by The cys regulon is under the positive control of CysB .
"
1785,1786,2.txt,2,3,1,Salmonella,Salmonella,Salmonella,"CysB protein also autoregulates its own synthesis by binding to the cysB promoter as a In Salmonella , amino-acid biosynthesis is tightly regulated by The cys regulon is under the positive control of CysB .
"
1786,1787,2.txt,3,4,1,Salmonella,Salmonella,Salmonella,"CysB protein also autoregulates its own synthesis by binding to the cysB promoter as a In Salmonella , amino-acid biosynthesis is tightly regulated by The cys regulon is under the positive control of CysB .
"
1787,1788,2.txt,4,5,1,Salmonella,Salmonella,Salmonella,"CysB protein also autoregulates its own synthesis by binding to the cysB promoter as a In Salmonella , amino-acid biosynthesis is tightly regulated by The cys regulon is under the positive control of CysB ."
1788,1789,2133.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,UvrY of E. coli both control the csr system by directly binding the csrB gene .
1789,1790,804.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. negative control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein .
"
1790,1791,804.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. Positive control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein .
"
1791,1792,804.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. negative control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein .
"
1792,1793,804.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. Positive control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein .
"
1793,1794,804.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. negative control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein .
"
1794,1795,804.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Freundlich , M. Positive control of ompB transcription in Escherichia coli by the cyclic-AMP-receptor-protein ."
1795,1796,44.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Surprisingly , we found that , in addition to the regulation by SsrB , srfJ is also negatively regulated by the repressor of the myo-inositol utilization genes in S. Typhimurium .
"
1796,1797,44.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Surprisingly , we found that , in addition to the regulation by SsrB , srfJ is also negatively regulated by the repressor of the myo-inositol utilization genes in S. Typhimurium .
"
1797,1798,743.txt,1,1,1,unidentified plasmid;unidentified plasmid,plasmid;plasmid,unidentified plasmid,"CsrA induces expression of plasmid-encoded fimbriae by binding the pefA 50-UTR Since the substantial PefA expression was CsrA dependent , we wanted to study the mechanism by which CsrA activates expression of plasmid-encoded fimbriae .
"
1798,1799,743.txt,2,3,1,unidentified plasmid,plasmid,unidentified plasmid,"To further investigate whether binding of CsrA to the GGA motif in the pefA 50-UTR was required for expression of plasmid-encoded fimbriae , we introduced point mutations into the Figure 3 CsrA regulates expression of PefA .
"
1799,1800,743.txt,3,4,2,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,plasmid;S. typhimurium;typhimurium;plasmid,Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,The CsrA-binding site in the pefA 50-UTR controls expression of plasmid-encoded fimbriae in-vivo A possible biological-function for the hierarchical control of fimbrial expression would be to ensure that S. typhimurium does not express plasmid-encoded fimbriae while residing outside a host .
1800,1801,757.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , five transcription factors have been implicated : hmp transcription is repressed by NsrR .
"
1801,1802,757.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , five transcription factors have been implicated : hmp transcription is repressed by NsrR .
"
1802,1803,757.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , previous studies have determined that NsrR negatively regulates the expression of the hmp genes .
"
1803,1804,1599.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,In S. Typhimurium the principal regulator of hmp expression during nitrosative-stress is the transcriptional repressor NsrR .
1804,1805,1214.txt,1,1,2,Salmonella;Salmonella;Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;Salmonella;Salmonella-specific;plasmid,Salmonella;unidentified plasmid,"Evaluation of the specificity o Salmonella P using various intestinal bacterial species * f CR primers virulence gene , Salmonella enterotoxin gene ( stn ) , invA gene , Fur-regulated gene , histidine transport operon , junction between SipB and SipC virulence genes , Salmonella-specific repetitive DNA fragment , and multiplex targeting invA gene and spvC gene of the virulence plasmid .
"
1805,1806,1214.txt,2,2,2,Salmonella;Salmonella;Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;Salmonella;Salmonella-specific;plasmid,Salmonella;unidentified plasmid,"Evaluation of the specificity o Salmonella P using various intestinal bacterial species * f CR primers virulence gene , Salmonella enterotoxin gene ( stn ) , invA gene , Fur-regulated gene , histidine transport operon , junction between SipB and SipC virulence genes , Salmonella-specific repetitive DNA fragment , and multiplex targeting invA gene and spvC gene of the virulence plasmid .
"
1806,1807,1214.txt,3,3,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) .
"
1807,1808,1214.txt,4,4,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) ."
1808,1809,1572.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by cyclic-AMP-receptor-protein .
"
1809,1810,1572.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , ansB is positively coregulated by CRP .
"
1810,1811,1572.txt,3,3,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"In S. enterica , the anaerobic regulation of ansB may require only CRP ."
1811,1812,1566.txt,1,8,1,Escherichia coli,Escherichia coli,Escherichia coli,"Forst S , Delgado J , Rampersaud A et al In vivo phosphorylation of OmpR , the transcription activator of the ompC genes in Escherichia coli ."
1812,1813,1228.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Summary The Salmonella ugd gene is required for the incorporation of 4-aminoarabinose in the lipopolysaccharide and resistance to the antibiotic polymyxin B. Transcription of the ugd gene is induced by Fe3 + via the PmrA -- PmrB two-component system and by low Mg2 + in a process that requires the PhoP -- PhoQ two-component system , the PhoP-activated PmrD protein and the PmrA -- PmrB system .
"
1813,1814,1228.txt,2,2,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
1814,1815,1228.txt,3,6,1,Salmonella,Salmonella,Salmonella,"the PhoP-dependent conditions activate ugd expression in Salmonella
"
1815,1816,1228.txt,4,7,1,Salmonella,Salmonella,Salmonella,"the PhoP-dependent conditions activate ugd expression in Salmonella
"
1816,1817,1228.txt,5,8,1,Salmonella,Salmonella,Salmonella,"the PhoP-dependent conditions activate ugd expression in Salmonella
"
1817,1818,1228.txt,6,9,1,Salmonella,Salmonella,Salmonella,the PhoP-dependent conditions activate ugd expression in Salmonella
1818,1819,2053.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"SlyA , antagonizes H-NS-medi-ated repression of hlyE transcription in E. coli ."
1819,1820,227.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"H-NS may directly repress PhilA because repression of hilA in E. coli requires both the upstream .
"
1820,1821,541.txt,1,10,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella;enterica,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Olekhnovich , I.N. , and Kadner , R.J. Contribution of the RpoA C-terminal domain to stimulation of the Salmo-nella enterica hilA promoter by HilC .
"
1821,1822,541.txt,2,11,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella;enterica,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Olekhnovich , I.N. , and Kadner , R.J. Contribution of the RpoA C-terminal domain to stimulation of the Salmo-nella enterica hilA promoter by HilC .
"
1822,1823,541.txt,3,13,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilC .
"
1823,1824,541.txt,4,14,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilC .
"
1824,1825,541.txt,5,19,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilC .
"
1825,1826,541.txt,6,20,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Contribution of the RpoA C-terminal domain to stimulation of the Salmonella enterica hilA promoter by HilC .
"
1826,1827,541.txt,7,23,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC are central activators of hilA expression ( Ellermeier et al. , 2005 ; 2001 ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1827,1828,541.txt,8,24,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lee ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1828,1829,541.txt,9,25,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilC are central activators of hilA expression ( Ellermeier et al. , 2005 ; Lucas ; Schechter et al. , Abbreviations : Cy , Cyanine ; SSC , saline sodium citrate ; SPI1 , Salmonella pathogenicity island 1 ; S. Typhimurium , Salmonella enterica serovar Typhimurium ; TTSS , type III secretion system .
"
1829,1830,233.txt,1,1,3,Escherichia coli;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,E. coli;E. coli;S. Typhimurium;Typhimurium;plasmid,unidentified plasmid;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In contrast , consistent with the hypothesis that zupT is constitutively expressed in E. coli , this putative consensus sequence was found to be absent in the E. coli zupT promoter .31 To test whether S. Typhimurium zupT is regulated by Zur , we electroporated plasmid pMCPzupT-lacZ in a strain lacking PP127 , obtaining pMCPzupT-lacZ zur .
"
1830,1831,233.txt,2,2,3,Escherichia coli;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,E. coli;E. coli;S. Typhimurium;Typhimurium;plasmid,unidentified plasmid;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In contrast , consistent with the hypothesis that zupT is constitutively expressed in E. coli , this putative consensus sequence was found to be absent in the E. coli zupT promoter .31 To test whether S. Typhimurium zupT is regulated by Zur , we electroporated plasmid pMCPzupT-lacZ in a strain lacking zur , obtaining pMCPzupT-lacZ zur .
"
1831,1832,233.txt,3,3,3,Escherichia coli;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,E. coli;E. coli;S. Typhimurium;Typhimurium;plasmid,unidentified plasmid;Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In contrast , consistent with the hypothesis that zupT is constitutively expressed in E. coli , this putative consensus sequence was found to be absent in the E. coli zupT promoter .31 To test whether S. Typhimurium zupT is regulated by Zur , we electroporated plasmid pMCPzupT-lacZ in a strain lacking zur , obtaining the strain PP153 ."
1832,1833,2286.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , the Fis-regulated E. coli proP gene seems to be regulated in a manner similar to that of hilA , in that levels are low during early exponential phase growth , followed by a burst of expression in late exponential-growth and a decrease in expression during stationary-phase ( Xu and Johnson , 1995 ) .
"
1833,1834,2286.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"However , the Fis-regulated E. coli proP gene seems to be regulated in a manner similar to that of hilA , in that levels are low during early exponential phase growth .
"
1834,1835,2279.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Co-operative binding of NagC to two sites is required for regulation of most NagC controlled operons in E. coli , although the galP gene is controlled via a single operator with high affinity .
"
1835,1836,2279.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"Co-operative binding of NagC to two sites is required for regulation of most NagC controlled operons in E. coli , although the galP gene is controlled via a single operator with high affinity ."
1836,1837,1770.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1837,1838,582.txt,1,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Unphosphorylated SsrB activates csgD expression Biofilm formation in Salmonella Typhimurium is governed by the master regulator , CsgD .
"
1838,1839,582.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Unphosphorylated SsrB activates csgD expression Biofilm formation in Escherichia coli is governed by the master regulator , CsgD .
"
1839,1840,2245.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Escherichia coli where inactivation of RpoS reduced Pol IV protein levels three-to fivefold in the wild-type background , indicating that regulation of dinB expression is different in these two species"
1840,1841,1982.txt,1,2,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , Norel , F. Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1841,1842,1982.txt,2,4,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schaeffer , F. , Kowarz , L. , , F. Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1842,1843,1982.txt,3,8,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Norel , F. Relationships between SpvR S phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1843,1844,1982.txt,4,10,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1844,1845,1982.txt,5,11,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR .
"
1845,1846,1982.txt,6,12,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR .
"
1846,1847,1982.txt,7,14,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1847,1848,1982.txt,8,15,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR .
"
1848,1849,1982.txt,9,16,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR .
"
1849,1850,1982.txt,10,17,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Grob , P. , and Guiney , D. G. In Vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR , J. Bacteriol .
"
1850,1851,1982.txt,11,19,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1851,1852,1982.txt,12,21,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1852,1853,1982.txt,13,22,1,Starmerella aceti,to 125,Starmerella aceti,"Gel mobility-shift assays revealed that the SpvR fusion proteins were able to bind to 125-and 147-bp DNA fragments of spvR promoter regions , respectively .
"
1853,1854,1982.txt,14,23,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter regions of spvR .
"
1854,1855,1982.txt,15,25,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Grob P , Guiney DG In vitro binding of the Salmonella dublin virulence plasmid regulatory protein SpvR to the promoter region of spvR .
"
1855,1856,1982.txt,16,27,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , Norel , F. Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence .
"
1856,1857,1982.txt,17,29,2,Salmonella;unidentified plasmid,Salmonella;plasmid,Salmonella;unidentified plasmid,"Robbe-Saule , V. , Schaeffer , F. , Kowarz , L. , , F. Relationships between H-NS , sigma S , SpvR phase in the control of spvR , the regulatory gene of the Salmonella plasmid virulence ."
1857,1858,1955.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1858,1859,966.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Notably , our observation that deletion of all of the IS200 copies in S. Typhimurium impacted on the expression of an SPI-1 gene not under the control of InvF is consistent with tnpA producing either a multi-functional regulatory RNA or , as in the case of IS1341 , multiple regulatory sRNAs ."
1859,1860,1558.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
1860,1861,796.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"orby , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1861,1862,796.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,".L. , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1862,1863,796.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"rown , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1863,1864,796.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,".J. , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1864,1865,796.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"arshall , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1865,1866,796.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,". , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1866,1867,796.txt,7,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"lank , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1867,1868,796.txt,8,8,1,Escherichia coli,Escherichia coli,Escherichia coli,". , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1868,1869,796.txt,9,9,1,Escherichia coli,Escherichia coli,Escherichia coli,"awley , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1869,1870,796.txt,10,10,1,Escherichia coli,Escherichia coli,Escherichia coli,".L. , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1870,1871,796.txt,11,11,1,Escherichia coli,Escherichia coli,Escherichia coli,"obman , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1871,1872,796.txt,12,12,1,Escherichia coli,Escherichia coli,Escherichia coli,".R. , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1872,1873,796.txt,13,13,1,Escherichia coli,Escherichia coli,Escherichia coli,"rocklehurst , A.P. ZntR is espon-sive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1873,1874,796.txt,14,14,1,Escherichia coli,Escherichia coli,Escherichia coli,"ZntR is responsive MerR-like transcriptional regulator of zntA in Escherichia coli .
"
1874,1875,796.txt,15,16,1,Escherichia coli,Escherichia coli,Escherichia coli,"Toxicol Appl Pharmacol 204 : 274 -- 308 Brocklehurst KR , Hobman JL , Lawley B , Blank L , Marshall SJ , Brown NL , Morby AP ZntR is a Zn - responsive MerR-like transcriptional regulator of zntA in Escherichia coli ."
1875,1876,741.txt,1,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Methods -- The TLC plates were covered by a staining solution containing agar , Luria-Bertani medium , 5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside ( X-gal ) , kanamycin and a S. typhimurium strain that harbours a reporter transcriptional lacZ-fusion to an archetypal PhoP-activated gene virK .
"
1876,1877,741.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"( a ) Bioautography carried out with the S. typhimurium strain that harbours a reporter transcriptional lacZ-fusion to a PhoP-activated gene virK .
"
1877,1878,741.txt,3,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"After development the solvent was removed and the plate was revealed by bioautography with a S. Typhimurium strain that harbours a reporter transcriptional lacZ-fusion to a PhoP-activated gene virK as described in the Methods section .
"
1878,1879,741.txt,4,7,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Chryseobacterium gallinarum,S. typhimurium;typhimurium;strain ( 100,Chryseobacterium gallinarum;Salmonella enterica subsp. enterica serovar Typhimurium,"The overlay was prepared in a Falcon tube in conditions of sterility by mixing sterile LB-medium ( 20 mL ) containing agar ( 0.12 g ) at ca. 42 °C , with 20 mg/mL solution of X-gal ( 333 μL ) , 50 μg/mL solution of kanamycin ( 20 μL ) and 1 × 10 CFU/mL 8 of the S. typhimurium strain ( 100 μL ) that harbours reporter transcriptional lacZ-fusions to either the archetypal PhoP-activated gene virK ( 14028 virK : : lacZ ) or to a gene activated by the OmpR -- EnvZ two-compo-nent system , tppB ( 14028 tppB : : MudI ) .
"
1879,1880,741.txt,5,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Inhibitory activity was detected by overlaying the plate with an aqueous solution of soft agar containing X-gal and a homogeneous suspension of the S. typhimurium strain that harbours a reporter transcriptional lacZ-fusion to an archetypal PhoP-activated gene virK .
"
1880,1881,741.txt,6,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,of the S. typhimurium str in that harbours reporter transcriptional lacZ-fusions to either the archetypal PhoP-activated gene virK or to a gene activated by the O
1881,1882,999.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Escherichia coli where inactivation of RpoS reduced Pol IV protein levels three-to fivefold in the wild-type background , indicating that regulation of dinB expression is different in these two species"
1882,1883,755.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , previous studies have determined that NsrR negatively regulates the expression of the ytfE genes .
"
1883,1884,1438.txt,1,1,1,Salmonella,Salmonella,Salmonella,"PhoP was reported to bind to the ssrB promoter when Salmonella are inside macrophages .
"
1884,1885,1438.txt,2,5,1,Salmonella,Salmonella,Salmonella,"PhoP also controls expression of Salmonella pathogenicity island-2 by binding to the ssrB promoter region ′ - UTR of the spiR transcript .
"
1885,1886,1438.txt,3,6,1,Salmonella,Salmonella,Salmonella,"PhoP also controls expression of Salmonella pathogenicity island-2 by binding to the ssrB promoter region ′ - UTR of the spiR transcript .
"
1886,1887,2131.txt,1,3,2,Salmonella;Escherichia coli;Salmonella,Salmonella;E. coli;Salmonella,Escherichia coli;Salmonella,"Expression of copA in Salmonella is directly controlled by CueR Unlike in E. coli , in Salmonella copA are located adjacent in the genome .
"
1887,1888,2131.txt,2,4,2,Salmonella;Escherichia coli;Salmonella,Salmonella;E. coli;Salmonella,Escherichia coli;Salmonella,"Expression of copA in Salmonella is directly controlled by CueR Unlike in E. coli , in Salmonella cueR are located adjacent in the genome .
"
1888,1889,2131.txt,3,5,2,Salmonella;synthetic construct,Salmonella;primer,synthetic construct;Salmonella,"To confirm that copA transcription in Salmonella is controlled directly by the transcriptional regulator CueR , we first mapped the transcription start site of the gene by primer-extension analysis , using RNA .
"
1889,1890,812.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Role of the MetR regulatory system in vitamin-B12-mediated repression of the Salmonella typhimurium metE gene .
1890,1891,46.txt,1,1,1,unidentified,unknown,unidentified,A tentative hypothesis is that asmA mutations might activate a MarA-regulated efflux pump hitherto unknown to transport bile-salts .
1891,1892,806.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1892,1893,2125.txt,1,2,2,Salmonella;Escherichia coli,Salmonella;E. coli,Escherichia coli;Salmonella,"SirA regulates csrC In both Salmonella and E. coli , SirA directly regulates csrB .
"
1893,1894,2125.txt,2,4,1,Salmonella,Salmonella,Salmonella,"SirA of Salmonella both control the csr system by directly binding the csrB gene .
"
1894,1895,2125.txt,3,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. typhimurium , SirA is a positive regulator of csrB .
"
1895,1896,2125.txt,4,9,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , SirA is a positive regulator of csrB ."
1896,1897,1376.txt,1,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. typhimurium UMR1 _ Having demonstrated that STM1697 inhibits motility by interacting with FlhD4C2
"
1897,1898,1376.txt,2,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. typhimurium UMR1 _ Having demonstrated that STM1697 inhibits motility by interacting with FlhD4C2
"
1898,1899,1410.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,Prigent-Combaret et al. suggested that 51 52 E. coli OmpR is also a regulator of the csgD regulator .
1899,1900,2119.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Previously in E. coli , YdcI was shown to regulate the expression of gltA carbon flux to the TCA cycle ."
1900,1901,91.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
1901,1902,85.txt,1,1,1,Salmonella,Enteritidis,Salmonella,"The same behavior has been described for other ArcA-controlled promoters in 6 Time : 14:6 # lpxO Expression Is Regulated by Fnr and ArcA in Response to Oxygen Availability FIGURE 2  Main lipid-A species produced by S. Enteritidis .
"
1902,1903,85.txt,2,11,1,Salmonella,Enteritidis,Salmonella,a model in which ArcA control the expression of lpxO in S. Enteritidis to achieve a fine-tuning of lipid-A hydroxylation levels
1903,1904,153.txt,1,5,1,Escherichia coli,E. coli,Escherichia coli,"Moreover , while in E. coli the expression of dps in logarithmic phase is modulated by the exposition to sources of hydrogen-peroxide -LRB- mediated by OxyR -RRB- , in the stationary-phase its expression is not induced by this reactive oxygen specie .
"
1904,1905,635.txt,1,1,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rcsC .
"
1905,1906,635.txt,2,2,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rcsC ."
1906,1907,621.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007,GIFU10007,Salmonella enterica subsp. enterica serovar Typhimurium GIFU10007,Purified recombinant protein OmpRHis6 of GIFU10007 was shown to bind the upstream region of the yehU gene by the gel-shift assay .
1907,1908,1148.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In support of this evolutionary confinement among Salmonella , Navarre et al. suggested potential negative regulation of srfN by the histone-like nucleoid structuring protein H-NS ."
1908,1909,1160.txt,1,1,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1909,1910,1160.txt,2,2,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1910,1911,1160.txt,3,3,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1911,1912,1160.txt,4,4,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , Vi-antigen expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1912,1913,1160.txt,5,5,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1913,1914,1160.txt,6,6,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased growth Others H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1914,1915,1160.txt,7,7,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , co regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many .
"
1915,1916,1160.txt,8,8,2,Sus scrofa;unidentified,pig;Unknown,Sus scrofa;unidentified,"Alteration in SPI-1 , flagellin expression Multiple , ( egpag , pig , SPV , SP12 genes ) Multiple , ( eg invF ) Osmolarity RcsB/RcsC Alternative ( T factors RpoS Starvation Multiple , ( eg spv ) Many , induction of stress tolerance , inreased intracellular survival H-NS Temperature , ( DNAtopology ) Temperature Iron , pH Many Global gene regulator TlpA Fur Unknown flpA Multiple , ( eg sitABCD ) Many ."
1916,1917,1821.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1917,1918,379.txt,1,1,1,Salmonella,Salmonella,Salmonella,"To confirm CRP control , CyaR RNA levels were determined in Salmonella strains inactivated for crp in early stationary-phase .
"
1918,1919,1809.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Interplay between global regulators of Escherichia coli : effect of RpoS on the transcription of the gene osmC .
"
1919,1920,1809.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Gutierrez , C. Interplay between global regulators of Escherichia coli : effect of RpoS on transcription of the gene osmC .
"
1920,1921,345.txt,1,15,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lee , C.A. Roles of HilC in regulation of hilA expression in Salmonella enterica sero-var Typhimurium .
"
1921,1922,345.txt,2,21,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SCHECHTER L.M. , LEE C.A. : HilC , directly bind the Salmonella typhimurium hilA promoter .
"
1922,1923,345.txt,3,27,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Schechter LM , Lee CA : HilC , directly bind the Salmonella typhimurium hilA promoter .
"
1923,1924,345.txt,4,28,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilC mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , SgJ-4 , and SgJ-5 for 30 min in InT-407 cells .
"
1924,1925,345.txt,5,29,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilC mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , SgJ-4 , and pH 5 for 30 min in InT-407 cells .
"
1925,1926,345.txt,6,30,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilC mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , pH 4 , and SgJ-5 for 30 min in InT-407 cells .
"
1926,1927,345.txt,7,31,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilC mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , pH 4 , and pH 5 for 30 min in InT-407 cells .
"
1927,1928,423.txt,1,2,1,unidentified plasmid;unidentified plasmid,plasmid;plasmid,unidentified plasmid,"We next examined transcription of the two Fur-repressed genes in the strain that carried deletions of the rstA and fur genes and harbored either the RstA expression plasmid or the plasmid vector ; analysis determined that the mRNA levels of fhuA and fhuF were similar to those in the fur deletion strain regardless of RstA expression ( Fig. 1B ) .
"
1928,1929,423.txt,2,7,1,unidentified plasmid,plasmid,unidentified plasmid,"Fur ( H90R ) production from the plasmid-linked lac promoter could no longer complement ssaG expression in the fur deletion strain under pH Fig. 2B , further that Fur repression of SPI-2 expression under acidic conditions is dependent on iron .
"
1929,1930,423.txt,3,8,1,unidentified plasmid,plasmid,unidentified plasmid,"Fur ( H90R ) production from the plasmid-linked lac promoter could no longer complement ssaG expression in the fur deletion strain under pH 6.0 conditions , further that Fur repression of SPI-2 expression under acidic conditions is dependent on iron .
"
1930,1931,344.txt,1,1,2,Escherichia coli;Salmonella;Salmonella;Salmonella,Escherichia coli;S. enterica;enterica;Salmonella,Escherichia coli;Salmonella,"We used the model to analyze the intergenic regions of the Escherichia coli ( 40 ) and S. enterica ( 41 ) genomes by using relaxed thresholds ( 25 ) , which allowed the recovery of PhoP-regulated promoters with weak matching to the PhoP box consensus , such as the Salmonella pmrD promoter , that could not be detected by using consensus cutoffs ( 2 , 25 ) despite being regulated and footprinted by the PhoP protein ( 18 , 26 ) .
"
1931,1932,344.txt,2,2,1,Salmonella,Salmonella,Salmonella,"the Salmonella pmrD promoter could not be detected by using consensus cutoffs despite being regulated by the PhoP protein
"
1932,1933,344.txt,3,3,1,Salmonella,Salmonella,Salmonella,"the Salmonella pmrD promoter could not be detected by using consensus cutoffs despite being regulated by the PhoP protein
"
1933,1934,1808.txt,1,1,1,Salmonella,Salmonella,Salmonella,Other regulators of AcrR did not contrib-ute to acrAB induction by indole in Salmonella .
1934,1935,422.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Consistent with the role of FimZ as an activator of S. typhimurium fimA expression , fimZ mutants exhibit only low levels of fimA expression .
"
1935,1936,422.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Consistent with the role of FimZ as an activator of S. typhimurium fimA expression , fimZ mutants are non-fimbriate .
"
1936,1937,1175.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ferritins are differentially regulated Previous studies in E. coli have shown that Fur positively regulates bfr expression under Fe-replete conditions .
"
1937,1938,1175.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , the S. Typhimu-rium bfr are positively regulated by Fe in a Fur-dependent manner , accounting for reduced total Fe in the fur mutant .
"
1938,1939,1175.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar to the S. Typhimurium bfr are activated by Fe in a Fur-dependent manner , most likely via Fur-mediated repression of RyhB .
"
1939,1940,1175.txt,4,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar to the S. Typhimurium bfr are activated by Fe in a Fur-dependent manner , most likely via Fur-mediated repression of the small RNA ."
1940,1941,393.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
1941,1942,393.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
1942,1943,1149.txt,1,12,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"HilD , directly bind the Salmonella typhimurium hilA promoter .
"
1943,1944,1149.txt,2,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lee , C.A. Roles of HilD in regulation of hilA expression in Salmonella enterica sero-var Typhimurium .
"
1944,1945,1149.txt,3,25,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"SCHECHTER L.M. , LEE C.A. : HilD , directly bind the Salmonella typhimurium hilA promoter .
"
1945,1946,1149.txt,4,36,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Schechter LM , Lee CA : HilD , directly bind the Salmonella typhimurium hilA promoter .
"
1946,1947,1149.txt,5,37,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , SgJ-4 , and SgJ-5 for 30 min in InT-407 cells .
"
1947,1948,1149.txt,6,38,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , SgJ-4 , and pH 5 for 30 min in InT-407 cells .
"
1948,1949,1149.txt,7,39,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , pH 4 , and SgJ-5 for 30 min in InT-407 cells .
"
1949,1950,1149.txt,8,40,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD mutually regulate the hilA gene expression 2 1 1 0 Control SGJ-3 SGJ-4 SGJ-5 0 SGJ-4 SGJ-3 Control SGJ-5 Fig. 3 Invasive ability of lysogenic S. Typhimurium , pH 4 , and pH 5 for 30 min in InT-407 cells .
"
1950,1951,1149.txt,9,85,1,unidentified,unknown,unidentified,"Many other regulators affect SPI-1 genes and/or HilA expression through HilD , including activation of hilA via an unknown regulation of HilD .
"
1951,1952,1149.txt,10,88,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Given that expression of hilA , significantly increases in bile , we investigated if HilD is posttranscriptionally regulated by bile in S. Typhi .
"
1952,1953,1149.txt,11,89,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In terms of understanding how S. Typhimurium differ with regard to SPI-1 expression in bile , our results , in combination with previous findings , dem-onstrate that HilD is differentially regulated by hilA .
"
1953,1954,1149.txt,12,90,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"In terms of understanding how S. Typhi differ with regard to SPI-1 expression in bile , our results , in combination with previous findings , dem-onstrate that HilD is differentially regulated by hilA ."
1954,1955,152.txt,1,1,2,Escherichia coli;Salmonella;Escherichia coli,Escherichia coli;Salmonella;Escherichia coli,Escherichia coli;Salmonella,"We hypothesized that the PhoP-activated yrbL gene of Escherichia coli might participate in an analogous loop with the PmrA protein because both the Salmonella pmrD and Escherichia coli yrbL promoters can be found in the same promoter profile and harbor similarly arranged PhoP and PmrA boxes ( Fig. 1 D and E ) .
"
1955,1956,84.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In flagellum-defective strains , the flgM gene product of S. typhimurium negatively regulates flagellar genes by inhibiting the activity of FliA ."
1956,1957,90.txt,1,1,4,Tetragenococcus koreensis;Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,strain JS;Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Tetragenococcus koreensis;Salmonella enterica subsp. enterica serovar Typhimurium,"Notably , after all strains were induced simultaneously by GEN Citation : to the 15th passage at subinhibitory concentrations , strain JS △ cpxR/pcpxR showed significant increases in d mdtA genes , Huang H , Sun Y , Yuan L , Pan Y , Gao Y , Ma C and Hu G Regulation of the Two-Component Regulator CpxR on Aminoglycosides and β-lactams Resista in Salmonella enterica serovar Typhimurium ."
1957,1958,2118.txt,1,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Calva E OmpR positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Calva E Negative osmoregulation of gene independently of OmpR in an hns background .
"
1958,1959,2118.txt,2,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Puente JL OmpR positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Puente JL Negative osmoregulation of gene independently of OmpR in an hns background ."
1959,1960,185.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Transcriptional regulation of Salmonella virulence -- a phoQ periplasmic domain mutation results in increased net phosphotransfer to PhoP .
"
1960,1961,185.txt,2,4,1,unidentified plasmid,plasmid,unidentified plasmid,"that harbored a plasmid with the phoQ genes under the control of a derivative of the lac promoter because a strain with a chromosomal phoQ mutation would constitutively activate the PhoP protein
"
1961,1962,185.txt,3,5,1,unidentified plasmid,plasmid,unidentified plasmid,"that harbored a plasmid with the phoP-HA genes under the control of a derivative of the lac promoter because a strain with a chromosomal phoQ mutation would constitutively activate the PhoP protein
"
1962,1963,1405.txt,1,1,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
1963,1964,1405.txt,2,2,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by VirF by H-NS .
"
1964,1965,1405.txt,3,3,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
1965,1966,1405.txt,4,4,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by VirF by H-NS .
"
1966,1967,1405.txt,5,5,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
1967,1968,1405.txt,6,6,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Sasakawa , C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by virF by H-NS .
"
1968,1969,1405.txt,7,7,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Tobe T , Yoshikawa M , Mizuno T , Sasakawa C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by repression by H-NS .
"
1969,1970,1405.txt,8,8,1,Shigella flexneri,Shigella flexneri,Shigella flexneri,"Tobe T , Yoshikawa M , Mizuno T , Sasakawa C. Transcriptional control of the invasion regulatory gene virB of Shigella flexneri : activation by VirF by H-NS ."
1970,1971,191.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Moreover , the operons of hcp-hcr , ytfE , ygbA , hmp , previously shown to be regulated by NsrR in Salmonella , were found to be induced 678.1 - , 314.5 - , 130.2 - , 123.7-and 15.9-fold , respectively , by the absence of NsrR .
"
1971,1972,191.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Moreover , the operons of hcp-hcr , ytfE , ygbA , hmp , previously shown to be regulated by NsrR in Escherichia coli - , 123.7-and 15.9-fold , respectively , by the absence of NsrR ."
1972,1973,807.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of NICHOLAS M. KREDICH * Departments of Biochemistry , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by the CysB protein .
"
1973,1974,807.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of NICHOLAS M. KREDICH * Departments of Medicine , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by the CysB protein .
"
1974,1975,807.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of Sulfide JACEK OSTROWSKI of Biochemistry , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by the CysB protein .
"
1975,1976,807.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of Sulfide JACEK OSTROWSKI of Medicine , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by the CysB protein .
"
1976,1977,807.txt,5,5,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of NICHOLAS M. KREDICH * Departments of Biochemistry , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by an inducer .
"
1977,1978,807.txt,6,6,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of NICHOLAS M. KREDICH * Departments of Medicine , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by an inducer .
"
1978,1979,807.txt,7,7,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of Sulfide JACEK OSTROWSKI of Biochemistry , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by an inducer .
"
1979,1980,807.txt,8,8,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium;Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"172 , No. 2 In Vitro Interactions of CysB Protein with the cysJIH Promoter of Salmonella typhimurium : Inhibitory Effects of Sulfide JACEK OSTROWSKI of Medicine , Dluke University Medical Center , Durham , North Carolina 27710 The cysteine regulon of Salmonella typhimurium is positively regulated by an inducer .
"
1980,1981,807.txt,9,16,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Hryniewicz , M.M. , and Kredich , N.M. Stoichiometry of binding of CysB to the cysJIH , cysK , and cysP promoter regions of Salmonella typhimurium .
"
1981,1982,807.txt,10,19,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Taken together , our results suggests that CysB regulates expression of cysJIH operon to produce H2S as a cellular protector during oxidative-stress in S. Typhimurium .
"
1982,1983,807.txt,11,33,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"olecular characterization of the cysJIH promoters of Salmonella typhimurium : regulation by CysB protein and N-acetyl-L-serine , J. Bacteriol .
"
1983,1984,807.txt,12,34,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"M.M. Hryniewicz , N.M. Kredich , Stoichiometry of binding of CysB to the cysJIH , cysK , and cysP promoter regions of Salmonella typhimurium , J. Bacteriol .
"
1984,1985,2124.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"the S. Typhi yncD gene indicates that the expression of the yncD gene may be regulated by the PmrAB system
"
1985,1986,1439.txt,1,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"These authors describe that acrAB is 1 12 actually regulated by RamA in Salmonella Typhimurium .
"
1986,1987,1439.txt,2,5,1,Salmonella,Salmonella,Salmonella,"These results suggest that RamA is the major regulator of Salmonella may mask the contributions of any other acrAB regulators .
"
1987,1988,1439.txt,3,6,1,Salmonella,Salmonella,Salmonella,"These results suggest that RamA is the major regulator of Salmonella acrAB .
"
1988,1989,1439.txt,4,9,1,Salmonella,Salmonella,Salmonella,"A recent study suggests that RamA is 27 a master regulator of Salmonella acrAB .
"
1989,1990,1439.txt,5,10,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"According to analysis of the relationship between Salmonella AcrAB regulators , RamA is the most effective regulator of Salmonella acrAB .
"
1990,1991,1439.txt,6,11,1,Salmonella,Salmonella,Salmonella,"According to analysis of the relationship between tigecycline resistance , RamA is the most effective regulator of Salmonella acrAB .
"
1991,1992,1439.txt,7,16,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , RamA mainly regulates the expression of acrAB .
"
1992,1993,1439.txt,8,17,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by the AraC/XylS-like regulators RamA ."
1993,1994,813.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
1994,1995,53.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Expression of hmpA is repressed by Fur in Salmonella , making it responsive The SOS response Free radicals are potent inducers of bacterial SOS responses in-vitro .
"
1995,1996,998.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To distinguish between these alternatives , we first analyzed the expression of mgtA , pcgL , mgtC , and pmrC as an indirectly PhoP-regulated gene ( 21 , 43 ) in a phoP : : Tn10 strain , expressing PhoP from the IPTG-regu-lated plasmid pEG9014 .
"
1996,1997,998.txt,2,3,1,Salmonella,Salmonella,Salmonella,"The PhoP-acti-vated mig-14 , mgtC , virK , and pagC promoters of Salmonella do not harbor a typical PhoP box in place of the 35 region , as found in archetypal PhoP-regulated promoters such as the mgtA promoter ( 13 ) .
"
1997,1998,998.txt,3,4,1,unidentified,not shown,unidentified,"The experimental verification that the PhoP protein binds to promoters in-vivo and Fig. 2C , together with the demonstration that the PhoP box is necessary for mgtC transcription despite data not shown , argues against proposals that atypical PhoP-dependent promoters are regulated by the PhoP protein only indirectly .
"
1998,1999,998.txt,4,6,1,unidentified,not shown,unidentified,"The experimental verification that the PhoP protein binds to promoters in-vivo and in-vitro , together with the demonstration that the PhoP box is necessary for mgtC transcription despite data not shown , argues against proposals that atypical PhoP-dependent promoters are regulated by the PhoP protein only indirectly .
"
1999,2000,998.txt,5,8,1,unidentified,not shown,unidentified,"The experimental verification that the PhoP protein binds to different classes in-vivo and Fig. 2C , together with the demonstration that the PhoP box is necessary for mgtC transcription despite data not shown , argues against proposals that atypical PhoP-dependent promoters are regulated by the PhoP protein only indirectly .
"
2000,2001,998.txt,6,10,1,unidentified,not shown,unidentified,"The experimental verification that the PhoP protein binds to different classes in-vivo and in-vitro , together with the demonstration that the PhoP box is necessary for mgtC transcription despite data not shown , argues against proposals that atypical PhoP-dependent promoters are regulated by the PhoP protein only indirectly .
"
2001,2002,998.txt,7,12,1,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"The level of PagC protein is lowered in a mgtC null mutant : ( A ) , 1-D SDS-PAGE of outer-membrane proteins isolated from 14028s ( wild-type ) or NM14 ( DmgtC ) grown in low Mg2þ medium ( conditions that activate PhoP-regulated genes ) .
"
2002,2003,998.txt,8,15,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to recruiting RNA polymerase .
"
2003,2004,998.txt,9,16,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to the mgtC promoter .
"
2004,2005,998.txt,10,17,1,Salmonella,Salmonella,Salmonella,"This is because the PhoP protein , a major regulator of Salmonella , activates mgtC transcription directly by binding to the mgtC promoter .
"
2005,2006,2087.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2006,2007,1565.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , in the presence of H2O2 , transcription of fur is also activated by OxyR in E. coli , resulting in repression of target mRNAs for iron-uptake proteins ."
2007,2008,2078.txt,1,4,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be amplified by ncRNA likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2008,2009,2078.txt,2,6,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be relayed by ncRNA likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2009,2010,2078.txt,3,8,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be amplified by a 144 bp non-coding RNA likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2010,2011,2078.txt,4,10,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be amplified by StyR-3 likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2011,2012,2078.txt,5,12,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be relayed by a 144 bp non-coding RNA likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2012,2013,2078.txt,6,14,1,Phaeoacremonium santali,a 28,Phaeoacremonium santali,"At the transcriptional level , the induction of ramA expression may be relayed by StyR-3 likely processed from ′ the 5 untranslated region of the ramA mRNA , which was also shown to interfere with RamR -- DNA binding activity .35 At , Ricci et a 28 revealed a higher order of f RamA regulati .
"
2013,2014,783.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in activation .
"
2014,2015,783.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in repression .
"
2015,2016,783.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in activation .
"
2016,2017,783.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in repression .
"
2017,2018,783.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in activation .
"
2018,2019,783.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,Aerobic regulation of cydAB operon expression in Escherichia coli : roles of ArcA in repression .
2019,2020,2050.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2020,2021,2050.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2021,2022,556.txt,1,2,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
2022,2023,556.txt,2,3,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,SL1344;14028s,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"We determined that a ugtL pmrA double mutant was as susceptible to polymyxin B as a phoP mutant ( Fig. 3C ) , which suggests that both types of lipid-A modifications may operate at the same time and argues against the participation of other PhoP-regulated genes in resistance to polymxyin B. Thus , the increased polymyxin B susceptibility reported for mutants defective in the PhoP-activated mig-14 , virK and somA genes may be characteristic of the SL1344 genetic background used in those studies ( Brodsky et al. , 2002 ; Detweiler et al. , 2003 ) because derivatives of the 14028s strain deleted for the mig-14 gene or harbouring a MudJ transposon insertion in the virK gene retained wild-type resistance to both polymxyin B and magainin 2 ( our unpublished results ) .
"
2023,2024,542.txt,1,1,1,unidentified,none,unidentified,"Through the use of transcriptional-fusions , none of or tol-associated genes were shown to be regulated by PhoPQ ; however , all of orfX , orf1 , tolQRA are predicted to be cotranscribed .
"
2024,2025,542.txt,2,2,1,unidentified,none,unidentified,"Through the use of transcriptional-fusions , none of the putative tol genes were shown to be regulated by PhoPQ ; however , all of orfX , orf1 , tolQRA are predicted to be cotranscribed ."
2025,2026,224.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Although a non-cytotoxic form of polymyxin B -- termed polymyxin B nonapeptide -- could partially protect a Salmonella pmrA mutant from Fe - mediated killing inactivation of the PmrA-activated loci responsible for the lipid-A modification with i.e. pbgP or phosphoethanolamine ( i.e. pmrC ) did not render the organism susceptible to Fe .
"
2026,2027,224.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Although a non-cytotoxic form of polymyxin B -- termed polymyxin B nonapeptide -- could partially protect a Salmonella pmrA mutant from Fe - mediated killing inactivation of the PmrA-activated loci responsible for the lipid-A modification with 4-aminoarabinose or phosphoethanolamine ( i.e. pmrC ) did not render the organism susceptible to Fe .
"
2027,2028,224.txt,3,4,1,Salmonella,Salmonella,Salmonella,"We have now determined that the regulatory protein PmrA is an antivirulence factor because inactivation of the pmrA gene exacerbated Salmonella virulence in Fig. 1A .
"
2028,2029,224.txt,4,5,2,Salmonella;Mus sp.,Salmonella;mice,Mus sp.;Salmonella,We have now determined that the regulatory protein PmrA is an antivirulence factor because inactivation of the pmrA gene exacerbated Salmonella virulence in C3H/HeN mice .
2029,2030,1798.txt,1,3,1,unidentified plasmid,plasmid,unidentified plasmid,"Even in the absence of hilE , hilA : : lacZY plasmid reporter levels still showed a 25.9-fold reduction when the PhoPQ regulators were activated by magnesium .
"
2030,2031,1954.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2031,2032,218.txt,1,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,Our data establish a role for the Fis protein in the upregulation of the ssrA gene when S. Typhimurium grows in macrophage .
2032,2033,1983.txt,1,1,1,Bacillus subtilis,Bacillus subtilis,Bacillus subtilis,Bacillus subtilis PhoP binds to the phoB tandem promoter exclusively within the phosphate-starvation-inducible promoter .
2033,2034,1072.txt,1,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the OmpR/EnvZ system is involved in the regulation of ompF porin genes , where both OmpF are expressed as abundant outer-mem-brane proteins as in E. coli .
"
2034,2035,1072.txt,2,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,S. Typhi;Typhi;E. coli,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhi , the OmpR/EnvZ system is involved in the regulation of ompF porin genes , where both OmpC are expressed as abundant outer-mem-brane proteins as in E. coli ."
2035,2036,280.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have N all bases , respectively .
"
2036,2037,280.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have D not C , respectively .
"
2037,2038,280.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have short Lrp-binding motifs , 5-HNDWTTATTHND-3 -LSB- , respectively .
"
2038,2039,280.txt,4,4,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have T , respectively .
"
2039,2040,280.txt,5,5,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have W A , respectively .
"
2040,2041,280.txt,6,6,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have 5-GNN TTTT-3 , respectively .
"
2041,2042,280.txt,7,7,2,Salmonella;unidentified,Salmonella;none,unidentified;Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have none -RSB- , respectively .
"
2042,2043,280.txt,8,8,1,Salmonella,Salmonella,Salmonella,"Although the ilvIH , fimZ , pefB , and spvA genes are known to be regulated by Lrp in Salmonella , the upstream regions of these genes have all bases , respectively ."
2043,2044,294.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,In E. coli flagellar motility is negatively regulated by RcsA binding to the RcsAB box of the promoter of the flagellar master regulator flhDC .
2044,2045,1066.txt,1,1,1,Strawberry lethal yellows phytoplasma,Sly,Strawberry lethal yellows phytoplasma,"It is likely the effects of σE on SPI-2 transcription is mediated by SsrB because Sly , can complement the decrease of SPI-2 expression as a result of rpoE deletion .
"
2045,2046,257.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"According with a LeuO-dual role regulator , it was found to be a positive regulator of yjjQ-bglJ operons in E. coli ."
2046,2047,1933.txt,1,2,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A gene homologous to mgrB in S. enterica has been shown to be activated by PhoP , suggesting that MgrB is part of a negative feedback loop in the PhoQ/PhoP signaling circuit ."
2047,2048,1927.txt,1,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"A S. typhimurium strain expressing a reporter fusion to the PhoP-controlled gene encoding acid phosphatase ( phoN ) was used as a wild type ST-PhoQ reporter strain background .
"
2048,2049,1927.txt,2,7,1,unidentified,not shown,unidentified,"The results for 10 mM and 10 μM Mg2 + were also confirmed by RT-PCR for phoN and four additional PhoP-controlled genes ( data not shown ) , so this phenotype does not appear to be specific to the reporter system used .
"
2049,2050,1099.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To determine if CpxR affects the autoregulation of hilD , the expression of the hilDcat fusion was determined in the WT S. Typhimurium strain and its derivatives 1cpxA , 1hilD , and 1hilD 1cpxA mutants .
"
2050,2051,928.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2051,2052,1264.txt,1,10,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , the S. Typhimu-rium bfr are positively regulated by Fe in a Fur-dependent manner , accounting for reduced total Fe in the fur mutant .
"
2052,2053,1502.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2053,2054,914.txt,1,1,1,Salmonella,Salmonella,Salmonella,"hilA expression is regulated by Salmonella invasion regulator ; however , it is not known how SirA is it known how sirA expression is itself regulated .
"
2054,2055,914.txt,2,2,1,Salmonella,Salmonella,Salmonella,"hilA expression is regulated by Salmonella invasion regulator ; however , it is not known how SirA modulates hilA expression .
"
2055,2056,2037.txt,1,1,1,Pasteurella multocida,Pasteurella multocida,Pasteurella multocida,Expression of the Pasteurella multocida ompH gene is negatively regulated by the Fur protein .
2056,2057,690.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Johnson , R.C. Fis activates the RpoSdependent stationary-phase expression of proP in Escherichia coli .
"
2057,2058,690.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"J. , R.C. Fis activates the RpoSdependent stationary-phase expression of proP in Escherichia coli .
"
2058,2059,690.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Xu , R.C. Fis activates the RpoSdependent stationary-phase expression of proP in Escherichia coli .
"
2059,2060,690.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,Fis activates the RpoS-dependent station-ary-phase expression of proP in Escherichia coli .
2060,2061,848.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2061,2062,1310.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2062,2063,1310.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2063,2064,2157.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"that YncC are both able to induce expression of katN locus in E. coli K-12
"
2064,2065,2157.txt,2,2,1,Salmonella,Salmonella,Salmonella,that YncC are both able to induce expression of katN locus in Salmonella
2065,2066,2143.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"pduD , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
2066,2067,653.txt,1,4,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene ; for example , expression of both csiD genes in E. coli is stimulated by H-NS .
"
2067,2068,653.txt,2,5,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene ; for example , expression of both the malT in E. coli is stimulated by H-NS .
"
2068,2069,653.txt,3,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"Lithgow JK , Haider F , Roberts IS , Green J H-NS nucleoprotein complexes control hlyE expression in Escherichia coli K-12 .
"
2069,2070,653.txt,4,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"H-NS nucleoprotein complexes control hlyE expression in Escherichia coli K-12 .
"
2070,2071,653.txt,5,8,1,Escherichia coli,Escherichia coli,Escherichia coli,H-NS nucleoprotein complexes control hlyE expression in Escherichia coli K-12 .
2071,2072,647.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhimurium;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi;Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,3 4 5 12 Salmonella serovar Typhi gi 16761966 6.59 65.66 351.3 / 0 6 848.4 / 0 Salmonella serovar Typhi Salmonella serovar Typhimurium Salmonella serovar Typhi Salmonella serovar Typhi 32 44 gi 16759110 gi 16764195 7.20 5.17 47.51 19.80 7 57.7 / 261.2 54 8 123.8 / 287.5 38/222 .4 gi 16502500 gi 16503032 5.17 5.15 21.50 23.2 7.21 e 20 13 20 35 49.6 / 0 103.1 / 0 123.2 / 0-66/0 Salmonella serovar Typhi Salmonella serovar Typhi Salmonella serovar Typhi Salmonella serovar Typhi gi 16760937 gi 16760937 gi 16760937 gi 16504014 5.09 5.06 5.03 6.12 51.89 52.45 52.47 51.89 SS-III -RRB- / OD of Salmonella serovar Typhi leuO FIG. 2 166 FIG. 2 -- Continued 166 The proteomic data revealed that LeuO represses the expression of ompX .
2072,2073,109.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Calva E OmpR positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Calva E Negative osmoregulation of the Salmonella ompS1 porin independently of OmpR in an hns background .
"
2073,2074,109.txt,2,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Puente JL OmpR positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Puente JL Negative osmoregulation of the Salmonella ompS1 porin independently of OmpR in an hns background ."
2074,2075,2194.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , the global regulator ss .
"
2075,2076,2194.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , phosphate regulation .
"
2076,2077,2194.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , PhoB .
"
2077,2078,2194.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , osmoregulation .
"
2078,2079,2194.txt,5,5,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , OmpR .
"
2079,2080,2194.txt,6,6,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , s32 of heat-shock response .
"
2080,2081,2194.txt,7,7,1,Escherichia coli,E. coli,Escherichia coli,"UspA is induced during stationary-phase In E. coli , induction of uspA in response to diverse stresses is independent of RpoS , RpoH ."
2081,2082,492.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"Expression of the flagellar operons in the FliA-overproducing conditiona baflllehlDeCb pTrc99C pKKOPA99C Activity with plasmid : Class 1 flhD-lac 1 0.99 : : lac Class 2 fliA-lac + : : TnlO 1 3.58 0.18 3.34 0.18 13.3 0.09 17.6 0.13 6.00 0.16 19.1 0.12 14.3 0.12 0.19 1 0.17 1 0.11 1 0.15 1 0.18 1 0.13 1 0.15 + : : TnlO + : : TnlO + : : TnlO + : : TnlO + : : TnlO + : : TnlO flgA-lac flgB-lac flhB-lac fliE-lac fliF-lac fliL-lac Class 3 + 1 9.77 : : TnlO 0.18 5.70 fliC-lac flgK-lac fliD-lac + 1 10.0 : : TnlO 0.19 7.03 + 1 12.2 : : TnlO 0.12 4.17 + 1 10.4 : : TnlO 0.10 9.18 + 1 8.74 : : TnlO 0.22 6.53 a KK1004 ( flhDC + ) or KK2040 ( flhD : : TnJO ) carrying the lac fusions with the flagellar operons were transformed with the respective plasmids , and the activity of 0-galactosidase was assayed with each transformant after induction for 2 h with IPTG ."
2082,2083,1674.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Transcriptional regulation of flhD by sigma ( FliA ) in enterohaemorrhagic Escherichia coli .
2083,2084,1112.txt,1,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both cadB promoters in SCV of macrophages .
"
2084,2085,1112.txt,2,3,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Importantly , a recent study suggests that Salmo-nella OmpR represses the cadC/BA operon by directly binding to both cadB promoters in the Salmonellacontaining vacuole of macrophages .
"
2085,2086,1884.txt,1,19,1,Salmonella,Salmonella,Salmonella,"These results suggest that PmrA repression of ssrB might enable Salmonella to favor dissemination to neighboring cells .
"
2086,2087,1884.txt,2,20,1,Salmonella,Salmonella,Salmonella,"These results suggest that PmrA repression of ssrB might enable Salmonella to control bacterial proliferation within a cell .
"
2087,2088,1890.txt,1,4,1,Escherichia coli,E. coli,Escherichia coli,"CpxR-P also confers resistance to fosfomycin by directly repressing the expression of uhpT , in the enterohemorrhagic E. coli strain ."
2088,2089,445.txt,1,1,2,Mus sp.;Salmonella,mice;Salmonella,Mus sp.;Salmonella,"Conversely , the iscR mutant was shown to be less virulent in mice compared to the wild‐type , consistent with a possible regulation of other genes involved in Salmonella pathogenesis by IscR .
"
2089,2090,445.txt,2,2,2,Mus sp.;Salmonella,mice;Salmonella,Mus sp.;Salmonella,"Conversely , the iscR mutant was shown to be more invasive in HeLa cells virulent in mice compared to the wild‐type , consistent with a possible regulation of other genes involved in Salmonella pathogenesis by IscR ."
2090,2091,1853.txt,1,1,1,unidentified,not shown,unidentified,"In soft-rot bacteria , binding of KdgR to KDG releases the protein from its operator sites ; however , in our experiments the addition of KDG to lacZ reporter fusions in kdgR-regulated genes did not relieve data not shown .
"
2091,2092,479.txt,1,15,1,Salmonella,Salmonella,Salmonella,"given the cross regulation of SPI-2 by the SPI-1-encoded HilD regulator , it is possible that in-vivo invF is needed to control other genes in Salmonella
"
2092,2093,479.txt,2,16,1,Salmonella,Salmonella,Salmonella,"given the cross regulation of SPI-1 by the SPI-1-encoded HilD regulator , it is possible that in-vivo invF is needed to control other genes in Salmonella
"
2093,2094,1852.txt,1,3,1,unidentified plasmid,plasmid,unidentified plasmid,"srgE ( SdiA-regulated gene E ) is a chromosomal gene regulated by SdiA that also appears to be found on the virulence plasmid pSLT [ 13 ] .
"
2094,2095,1852.txt,2,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The other gene _ regulated by SdiA in S. Typhimurium , srgE ,
"
2095,2096,1852.txt,3,9,1,Salmonella,Salmonella,Salmonella,"Upon detecting AHLs produced by other species of bacteria , SdiA in Salmonella activates expression of two srg ( SdiA-regulated gene ) loci , the rck operon that encodes seven genes and the srgE gene ( 1 , 61 ) .
"
2096,2097,1852.txt,4,11,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"AI-1 Signaling in Salmonella Upon detecting AHLs produced by other species of bacteria , SdiA in Salmonella activates expression of two srg ( SdiA-regulated gene ) loci , the rck operon that encodes seven genes and the srgE gene ( 19 , 35 ) .
"
2097,2098,1846.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Felis catus,SL1344;SL1344;cat,Felis catus;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,"Filled bars indicate the percentage of genes more highly expressed in SL1344 than in the fis mutant ( i.e. considered as Fis-activated ) ; hatched bars represent the percentage of genes more highly expressed in the SL1344fis : : cat mutant than in the wild-type ( considered as Fis-repressed ) .
"
2098,2099,322.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"By contrast , Zn2 + has been shown to promote transcription of the pmrA and pmrB genes as well as that of several PmrA-activated genes in E. coli ( Lee et al. , 2005 ) .
"
2099,2100,444.txt,1,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;Salmonella enterica;enterica;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 157 , 2504 -- 2514 Integration host factor alleviates H-NS silencing the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA of d Antonio Juárez1 Correspondence Antonio Juárez 1 Departament de Microbiologia , Facultat de Biologia , Universitat de Barcelona , Avda Diagonal , 645 , 08028 Barcelona , Spain ajuarez@ub.edu 2 Institut de a ( , Parc Cientıfic de Barcelona , Baldiri Reixach , 15-21 , 08028 Barcelona , Spain Coordination of the expression of Salmonella enterica invasion genes on Salmonella pathogenicity island 1 ( SPI1 ) depends on a complex circuit involving ving several regul .
"
2100,2101,444.txt,2,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;Salmonella enterica;enterica;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 157 , 2504 -- 2514 Integration host factor alleviates H-NS silencing the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA of d Antonio Juárez1 Correspondence Antonio Juárez 1 Departament de Microbiologia , Facultat de Biologia , Universitat de Barcelona , Avda Diagonal , 645 , 08028 Barcelona , Spain ajuarez@ub.edu 2 Institut de de Bioenginyeria de Catal , Parc Cientıfic de Barcelona , Baldiri Reixach , 15-21 , 08028 Barcelona , Spain Coordination of the expression of Salmonella enterica invasion genes on Salmonella pathogenicity island 1 ( SPI1 ) depends on a complex circuit involving ving several regul .
"
2101,2102,444.txt,3,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;Salmonella enterica;enterica;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 157 , 2504 -- 2514 Integration host factor alleviates H-NS silencing the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA of Mário H. Queiroz ,1 Cristina Madrid ,1 Sònia Paytubi ,1 Carlos Balsalobr Correspondence Antonio Juárez 1 Departament de Microbiologia , Facultat de Biologia , Universitat de Barcelona , Avda Diagonal , 645 , 08028 Barcelona , Spain ajuarez@ub.edu 2 Institut de a ( , Parc Cientıfic de Barcelona , Baldiri Reixach , 15-21 , 08028 Barcelona , Spain Coordination of the expression of Salmonella enterica invasion genes on Salmonella pathogenicity island 1 ( SPI1 ) depends on a complex circuit involving ving several regul .
"
2102,2103,444.txt,4,6,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella;Salmonella enterica;Salmonella;Salmonella,Salmonella;Salmonella enterica;enterica;Typhimurium;Salmonella;Salmonella enterica;enterica;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Microbiology , 157 , 2504 -- 2514 Integration host factor alleviates H-NS silencing the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA of Mário H. Queiroz ,1 Cristina Madrid ,1 Sònia Paytubi ,1 Carlos Balsalobr Correspondence Antonio Juárez 1 Departament de Microbiologia , Facultat de Biologia , Universitat de Barcelona , Avda Diagonal , 645 , 08028 Barcelona , Spain ajuarez@ub.edu 2 Institut de de Bioenginyeria de Catal , Parc Cientıfic de Barcelona , Baldiri Reixach , 15-21 , 08028 Barcelona , Spain Coordination of the expression of Salmonella enterica invasion genes on Salmonella pathogenicity island 1 ( SPI1 ) depends on a complex circuit involving ving several regul .
"
2103,2104,444.txt,5,9,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"M.H. Queiroz , C. Madrid , S. Paytubi , C. Balsalobre , A. Juárez , Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA , Microbiology 157 2504 .
"
2104,2105,444.txt,6,10,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Queiroz MH , Madrid C , Paytubi S , Balsalobre C , Juárez A : Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA .
"
2105,2106,444.txt,7,11,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA .
"
2106,2107,444.txt,8,12,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA .
"
2107,2108,444.txt,9,14,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA .
"
2108,2109,444.txt,10,15,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Juarez , A. Integration host factor alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA .
"
2109,2110,444.txt,11,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Queiroz , M.H. , Madrid , C. , Paytubi , S. , Balsalobre , C. , alleviates H-NS silencing of the Salmonella enterica serovar Typhimurium master regulator of SPI1 , hilA ."
2110,2111,450.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Intriguingly , association of AraC with the site in dcp , as measured by ChIP/qPCR , is the highest of all AraC-bound regions in the E. coli genome ( Fig. 1A ) .
"
2111,2112,1885.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2112,2113,493.txt,1,1,1,synthetic construct,Primer,synthetic construct,"Primer extension and DNase I footprinting identified multiple SsrB-regulated promoters within SPI-2 located upstream of ssaB , sseA , ssaG and ssaM ."
2113,2114,1488.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,Putative regulation by ArgR was evaluated by generating three isogenic S. Typhi deletion mutants of fur .
2114,2115,2181.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In addition to its RNA splicing role , StpA induces OmpF expression in E. coli by destabilizing the micF antisense RNA ."
2115,2116,108.txt,1,1,1,Cell fusing agent virus,CFA,Cell fusing agent virus,"They suggested that the difference in the CFA synthase level may be the result of different rpoS alleles , since the expression of another RpoS-regulated gene , poxB , was lower in FT1 than ZK126 ( Wang & Cronan , 1994 ) ."
2116,2117,646.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To distinguish between these alternatives , we first analyzed the expression of mgtA , pcgL , mgtC , and pmrC as an indirectly PhoP-regulated gene ( 21 , 43 ) in a phoP : : Tn10 strain , expressing PhoP from the IPTG-regu-lated plasmid pEG9014 .
"
2117,2118,646.txt,2,6,1,Salmonella,Salmonella,Salmonella,"The PhoP-acti-vated mig-14 , mgtC , virK , and pagC promoters of Salmonella do not harbor a typical PhoP box in place of the 35 region , as found in archetypal PhoP-regulated promoters such as the mgtA promoter ( 13 ) .
"
2118,2119,646.txt,3,7,1,Salmonella,Salmonella,Salmonella,"We established that when Salmonella experiences the PhoP protein binds to both the archetypal mgtA promoter as well as the mig-14 , mgtC , and pagC promoters .
"
2119,2120,646.txt,4,17,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Overall , this study clearly showed that the S. enterica PhoP protein binds to the mgtA promoter regardless of its phosphorylation state .
"
2120,2121,646.txt,5,19,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , Fig. 4D , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
2121,2122,646.txt,6,20,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , one , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
2122,2123,646.txt,7,21,1,Escherichia coli,E. coli,Escherichia coli,"The existence of a pair of divergently transcribed genes , the other , is reminiscent of the mode of transcription regulation of the divergently transcribed mgtA genes of E. coli : while mgtA is activated , treR is repressed by PhoP .
"
2123,2124,646.txt,8,29,2,Salmonella;Mus sp.,Salmonella;mice,Mus sp.;Salmonella,"By contrast , the MgtA-mediated feedback takes place relatively late as it requires cytosolic Mg2 + levels to drop below a certain threshold ( Fig. 2A ) , and does not appear to be related to virulence because neither mgtA nor the PhoP-regulated genes whose expression is most affected upon mgtA deletion are necessary for Salmonella to cause a lethal infection in mice ( Gunn et al. , 1998 ; Gunn et al. , 1995 ; Blanc-Potard and Groisman , 1997 ) .
"
2124,2125,646.txt,9,30,2,Salmonella;Mus sp.,Salmonella;mice,Mus sp.;Salmonella,"By contrast , the MgtA-mediated feedback takes place relatively late as it requires cytosolic Mg2 + levels to drop below a certain threshold ( Fig. 2A ) , and does not appear to be related to virulence because neither mgtA nor the PhoP-regulated genes whose expression is most affected upon mgtA deletion are necessary for Salmonella to cause a lethal infection in mice ( Gunn et al. , 1998 ; Gunn et al. , 1995 ; Blanc-Potard and Groisman , 1997 ) .
"
2125,2126,134.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , rcnA , was found to be regulated by Fur .
"
2126,2127,134.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , rcnA expression has also been suggested to be under the control of iron-sensing Fur , implying some interplay of iron homeostasis .
"
2127,2128,134.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , rcnA expression has also been suggested to be under the control of iron-sensing Fur , implying some interplay of cobalt .
"
2128,2129,134.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , rcnA expression has also been suggested to be under the control of iron-sensing Fur , implying some interplay of nickel ."
2129,2130,21.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Here we report on induction of acrAB in Salmonella via the specific regulator RamA in response to indole .
"
2130,2131,21.txt,2,3,1,Salmonella,Salmonella,Salmonella,"The results indicate that the RamA regulator is required for indole induction of acrAB in Salmonella .
"
2131,2132,21.txt,3,11,1,Escherichia coli,E. coli,Escherichia coli,"RamA induction of acrAB by conditioned-medium of E. coli .
"
2132,2133,21.txt,4,12,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"We found that acrAB induction by these three signal sources is completely dependent on the Salmonella-specific regulator RamA , indicating that RamA plays a major role in inducing acrAB .
"
2133,2134,21.txt,5,13,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"We found that acrAB induction by these three signal sources is completely dependent on the Salmonella-specific regulator RamA , indicating that RamA plays a major role in inducing acrAB .
"
2134,2135,21.txt,6,14,1,Salmonella,Salmonella,Salmonella,"However , our data indicate that bile induction of acrAB in Salmonella is completely dependent on RamA , not Rob .
"
2135,2136,21.txt,7,15,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The acrAB induction by these three signal sources is completely dependent on the Salmonella-specific regulator RamA , indicating that RamA plays a major role in inducing acrAB .
"
2136,2137,21.txt,8,16,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The acrAB induction by these three signal sources is completely dependent on the Salmonella-specific regulator RamA , indicating that RamA plays a major role in inducing acrAB .
"
2137,2138,21.txt,9,17,1,Salmonella,Salmonella,Salmonella,"However , our data indicate that bile induction of acrAB in Salmonella is completely dependent on RamA , not Rob .
"
2138,2139,21.txt,10,20,1,Salmonella,Salmonella,Salmonella,"In Salmonella , RamA is involved in inducing acrAB in addition to the abovementioned regulators .
"
2139,2140,2142.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2140,2141,2142.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2141,2142,875.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"This raised the possibility that StpA could directly induce the expression of crp at LEP , as had been observed in E. coli ."
2142,2143,685.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2143,2144,1463.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;unidentified,Salmonella;Salmonella enterica;enterica;unknown,Salmonella enterica;unidentified;Salmonella,"In Salmonella enterica , overexpression of the RstA protein lowered the levels of the alternative sigma factor RpoS by an unknown mechanism , which consequently downregulated transcription of three RpoS-controlled genes , narZ , spvA , and bapA , in stationary-phase ( 4 ) ."
2144,2145,691.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2145,2146,1259.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2146,2147,1259.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2147,2148,2036.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To ascertain whether slyA expression is regulated by RpoS , an isogenic rpoS S. typhimurium mutant was transformed with the slyA : : the level of b-galactosidase expression was determined .
"
2148,2149,2036.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,S. typhimurium;typhimurium;plasmid,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"To ascertain whether slyA expression is regulated by RpoS , an isogenic rpoS S. typhimurium mutant was transformed with the slyA : : lacZ plasmid was determined ."
2149,2150,901.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of micF is controlled by Rob ."
2150,2151,1271.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Interplay between global regulators of Escherichia coli : effect of Lrp on the transcription of the gene osmC .
"
2151,2152,1271.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Gutierrez , C. Interplay between global regulators of Escherichia coli : effect of Lrp on transcription of the gene osmC ."
2152,2153,518.txt,1,1,2,Escherichia coli;Salmonella;Escherichia coli,E. coli;Salmonella;E. coli,Escherichia coli;Salmonella,"This behavior is due to the highly divergent PmrD protein ( Figs. 6 and 7 ) , because replacement of the E. coli pmrD gene by the Salmonella pmrD gene endowed E. coli with the ability to transcribe the PmrA-activated pbgP gene and to exhibit resistance to polymyxin B in response to the low Mg2 signal ( Fig. 3 ) .
"
2153,2154,518.txt,2,2,6,Escherichia coli;Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,E. coli;Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris;Escherichia coli,"This phenotype was reflected also at the level of transcription ; the PmrA-activated pbgP gene was expressed by E. coli cells experiencing Fe3 but not in response to the low Mg2 signal ( Fig. 2C ) , whereas a pbgP transcript was made by Salmo-nella in both conditions ( Fig. 2D ) .
"
2154,2155,518.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Although a non-cytotoxic form of polymyxin B -- termed polymyxin B nonapeptide ( Vaara and Vaara , 1983 ) -- could partially protect a Salmonella pmrA mutant from Fe ( III ) - mediated killing ( Chamnongpol et al. , 2002 ) inactivation of the PmrA-activated loci responsible for the lipid-A modification with 4-aminoarabinose ( i.e. pbgP ) or phosphoethanolamine ( i.e. pmrC ) did not render the organism susceptible to Fe ( III ) ( Lee et al. , 2004 ) .
"
2155,2156,518.txt,4,6,1,Salmonella,Salmonella,Salmonella,"For example , activation of the PmrA/PmrB system ( 26 , 27 ) by growing Salmonella in media containing a high ( 10 mM ) Mg2 + concentration and then shifting it to media containing a low 2 + 3 + ( 50 mM ) Mg concentration and 100 mM Fe resulted in an increase in the mRNA levels corresponding to the PmrA-activated pbgP and pmrC genes , which peaked and then reached new steady-state levels ( fig .
"
2156,2157,518.txt,5,7,1,Salmonella,Salmonella,Salmonella,"Synthesis of Ara4N and addition to the lipid-A is mediated by the Salmonella PmrA-activated genes pmrE ( also known as ugd ) and pmrHFIJKLM ( the pmrH operon , also known as the pbgP or arn operon ) ( Gunn et al. , 2000 ) .
"
2157,2158,1932.txt,1,4,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Slauch , J.M. Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2158,2159,1932.txt,2,5,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ikeda , J.S. , Janakiraman , A. , Kehres , D.G. , Maguire , M.E. , Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2159,2160,1932.txt,3,6,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2160,2161,1932.txt,4,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar effects of manganese on Fur-mediated regulation of the S. Typhimurium sitABCD operon have been observed .
"
2161,2162,1932.txt,5,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar effects of cobalt on Fur-mediated regulation of the S. Typhimurium sitABCD operon have been observed .
"
2162,2163,1932.txt,6,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Similar effects of iron on Fur-mediated regulation of the S. Typhimurium sitABCD operon have been observed .
"
2163,2164,1932.txt,7,10,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2164,2165,1932.txt,8,11,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2165,2166,1932.txt,9,13,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
"
2166,2167,1932.txt,10,14,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Slauch , J. M. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2167,2168,1932.txt,11,15,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"M. E. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2168,2169,1932.txt,12,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Maguire Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2169,2170,1932.txt,13,17,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"D. G. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2170,2171,1932.txt,14,18,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Kehres Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2171,2172,1932.txt,15,19,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"A. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2172,2173,1932.txt,16,20,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Janakiraman Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2173,2174,1932.txt,17,21,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"J. S. Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2174,2175,1932.txt,18,22,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Ikeda Transcriptional regulation of sitABCD of Salmonella enterica serovar typhimurium by Fur .
"
2175,2176,1932.txt,19,23,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Transcriptional regulation of sitABCD of Salmonella enterica serovar Typhimurium by Fur .
2176,2177,2234.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Other regulators of MarA did not contrib-ute to acrAB induction by indole in Salmonella .
"
2177,2178,2234.txt,2,4,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"However , acrAB are also induced by stress signals in additional ways , it was suggested that S. enterica to salicylate activates MarA through binding to its repressor , MarR .
"
2178,2179,2234.txt,3,5,1,Escherichia coli,E. coli,Escherichia coli,"However , acrAB are also induced by stress signals in additional ways , it was suggested that exposure of E. coli activates MarA through binding to its repressor , MarR .
"
2179,2180,2220.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,S. typhimurium;typhimurium;Salmonella,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To explore the hypothesis that controlled synthesis of AI-2 at tight control of LuxS activity , is required for S. typhimurium biofilm formation as suggested from the previous experiments , we tested whether introducing luxS under the control of pCMPG5643 , resulted in restoration of Salmonella bio-film formation in the luxS mutant .
"
2180,2181,2220.txt,2,2,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,S. typhimurium;typhimurium;Salmonella,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To explore the hypothesis that controlled synthesis of AI-2 at tight control of LuxS activity , is required for S. typhimurium biofilm formation as suggested from the previous experiments , we tested whether introducing luxS under the control of pCMPG5643 , resulted in restoration of Salmonella bio-film formation in the luxS mutant .
"
2181,2182,2220.txt,3,3,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,S. typhimurium;typhimurium;Salmonella,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To explore the hypothesis that controlled synthesis of AI-2 at tight control of LuxS activity , is required for S. typhimurium biofilm formation as suggested from the previous experiments , we tested whether introducing luxS under the control of the strong constitutive nptII promoter , resulted in restoration of Salmonella bio-film formation in the luxS mutant .
"
2182,2183,2220.txt,4,4,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,S. typhimurium;typhimurium;Salmonella,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"To explore the hypothesis that controlled synthesis of AI-2 at tight control of LuxS activity , is required for S. typhimurium biofilm formation as suggested from the previous experiments , we tested whether introducing luxS under the control of the strong constitutive nptII promoter , resulted in restoration of Salmonella bio-film formation in the luxS mutant ."
2183,2184,2208.txt,1,26,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,CysB-dependent upregulation of the Salmonella Typhimurium cysJIH operon in response to antimicrobial compounds .
2184,2185,281.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"STM2123 _ upregulated expression of CsgD-like AdrA overexpression from a plasmid
"
2185,2186,281.txt,2,4,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"For curli production in S. enterica , STM2123 activate CsgD , while four Citation Cowles KN , Willis DK , Engel TN , Jones JB , Barak JD .
"
2186,2187,281.txt,3,5,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"For cellulose production in S. enterica , STM2123 activate CsgD , while four Citation Cowles KN , Willis DK , Engel TN , Jones JB , Barak JD .
"
2187,2188,2236.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,CsrA inhibits translation initiation of Escherichia coli hfq by binding to a single site .
2188,2189,254.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , recA null mutants are unable to stimulate the LexA cleavage reaction ."
2189,2190,1924.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2190,2191,1924.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2191,2192,2008.txt,1,1,1,Escherichia coli;Escherichia coli,E. coli;E. coli,Escherichia coli,"In E. coli , it was questioned whether csrC was directly regulated by UvrY because the amount of LacZ was only two-fold higher whe using S-30 extracts of wild-type E. coli compared to extracts from a uvrY mutant ."
2192,2193,2034.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"E. coli strains were shown to express higher levels of flagellum genes and increased motility , possibly due to the inhibition of flhDC promoters by DksA .
"
2193,2194,2034.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"E. coli strains were shown to express higher levels of che-motaxis genes and increased motility , possibly due to the inhibition of flhDC promoters by DksA ."
2194,2195,917.txt,1,1,2,Salmonella;Escherichia coli;Salmonella,Salmonella;E. coli;Salmonella,Escherichia coli;Salmonella,"Like the D-Ala , the phosphatases of Salmonella are regulated differently : the E. coli phoA gene is transcriptionally induced under phosphate-starvation conditions by the PhoB-PhoR regulatory system , whereas the Salmonella phoN is transcriptionally regulated by the PhoP-PhoQ system .
"
2195,2196,917.txt,2,2,2,Escherichia coli;Escherichia coli;Salmonella,E. coli;E. coli;Salmonella,Escherichia coli;Salmonella,"Like the D-Ala , the phosphatases of E. coli are regulated differently : the E. coli phoA gene is transcriptionally induced under phosphate-starvation conditions by the PhoB-PhoR regulatory system , whereas the Salmonella phoN is transcriptionally regulated by the PhoP-PhoQ system .
"
2196,2197,917.txt,3,3,2,Salmonella;Escherichia coli;Salmonella,Salmonella;E. coli;Salmonella,Escherichia coli;Salmonella,"Like D-Ala dipeptidases , the phosphatases of Salmonella are regulated differently : the E. coli phoA gene is transcriptionally induced under phosphate-starvation conditions by the PhoB-PhoR regulatory system , whereas the Salmonella phoN is transcriptionally regulated by the PhoP-PhoQ system .
"
2197,2198,917.txt,4,4,2,Escherichia coli;Escherichia coli;Salmonella,E. coli;E. coli;Salmonella,Escherichia coli;Salmonella,"Like D-Ala dipeptidases , the phosphatases of E. coli are regulated differently : the E. coli phoA gene is transcriptionally induced under phosphate-starvation conditions by the PhoB-PhoR regulatory system , whereas the Salmonella phoN is transcriptionally regulated by the PhoP-PhoQ system ."
2198,2199,1529.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,The aldB gene was repressed by Fis in agreement with previous data from E. coli .
2199,2200,718.txt,1,1,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Falkow , S. OmpR regulates the two-component system ssrA ± ssrB in Salmo-nella pathogenicity island 2 .
"
2200,2201,718.txt,2,2,5,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella,Salmo;Salmo;Salmo;Salmo;Salmo-nella,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris,"Lee , A.K. , Detweiler , C.S. , , S. OmpR regulates the two-component system ssrA ± ssrB in Salmo-nella pathogenicity island 2 .
"
2201,2202,718.txt,3,11,1,synthetic construct,primer,synthetic construct,"Previous results from primer-extension analysis suggest that regulation of ssrA by OmpR is distinct .
"
2202,2203,718.txt,4,12,1,synthetic construct,primer,synthetic construct,"Previous results from primer-extension analysis suggest that regulation of ssrA by OmpR is uncoupled .
"
2203,2204,718.txt,5,15,1,Salmonella,Salmonella,Salmonella,"previous work in Salmonella has shown that phosphorylated OmpR can bind to either sensor kinase gene ssrA within SPI-2
"
2204,2205,1307.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,In E. coli uspA has been shown to be regulated by FadR .
2205,2206,1461.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Romeo , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2206,2207,1461.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Wei , B.L. , Brun-Zinkernagel , A.M. , Simecka , J.W. , Pruss , B.M. , Babitzke , P. , Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2207,2208,1461.txt,3,7,1,Escherichia coli,E. coli,Escherichia coli,"Regulation of flagellar synthesis and chemotaxis by CsrA In E. coli are co-ordinately regulated by flhDC Table 1 .
"
2208,2209,1461.txt,4,8,1,Escherichia coli,E. coli,Escherichia coli,"Regulation of flagellar synthesis and chemotaxis by CsrA In E. coli are co-ordinately regulated by flhDC Table 1 .
"
2209,2210,1461.txt,5,9,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella chemotaxis/aerotaxis are co-ordinately regulated by flhDC Table 1 .
"
2210,2211,1461.txt,6,10,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella chemotaxis/aerotaxis are co-ordinately regulated by flhDC Table 1 .
"
2211,2212,1461.txt,7,11,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella flagellar biosynthesis are co-ordinately regulated by flhDC Table 1 .
"
2212,2213,1461.txt,8,12,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella flagellar biosynthesis are co-ordinately regulated by flhDC Table 1 .
"
2213,2214,1461.txt,9,13,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella coli are co-ordinately regulated by flhDC Table 1 .
"
2214,2215,1461.txt,10,14,1,Salmonella,Salmonella,Salmonella,"Regulation of flagellar synthesis and chemotaxis by CsrA In Salmonella coli are co-ordinately regulated by flhDC Table 1 .
"
2215,2216,1461.txt,11,15,1,Escherichia coli,E. coli,Escherichia coli,"flhDC _ known in E. coli to be controlled by CsrA
"
2216,2217,1461.txt,12,16,1,Escherichia coli,Escherichia coli,Escherichia coli,"Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2217,2218,1461.txt,13,17,1,Escherichia coli,Escherichia coli,Escherichia coli,"Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2218,2219,1461.txt,14,18,1,Escherichia coli,Escherichia coli,Escherichia coli,"Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2219,2220,1461.txt,15,19,1,Escherichia coli,Escherichia coli,Escherichia coli,"Romeo , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2220,2221,1461.txt,16,20,1,Escherichia coli,Escherichia coli,Escherichia coli,"Wei , B.L. , Brun-Zinkernagel , A.M. , Simecka , J.W. , Pruss , B.M. , Babitzke , P. , Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2221,2222,1461.txt,17,21,1,Escherichia coli,Escherichia coli,Escherichia coli,"Wei , B.L. ; Brun-Zinkernagel , A.M. ; Simecka , J.W. ; Pruss , B.M. ; Babitzke , P. ; Romeo , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2222,2223,1461.txt,18,22,1,Escherichia coli,Escherichia coli,Escherichia coli,"Nat Rev Microbiol 7 : 765 -- 774 Wei BL , Brun-Zinkernagel AM , Simecka JW , Pruss BM , Babitzke P , Romeo T Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2223,2224,1461.txt,19,24,1,Escherichia coli,Escherichia coli,Escherichia coli,"Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2224,2225,1461.txt,20,25,1,Escherichia coli,Escherichia coli,Escherichia coli,"Wei BL , Brun-Zinkernagel AM , Simecka JW , Prüss BM , Babitzke P , Romeo T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2225,2226,1461.txt,21,26,1,Escherichia coli,Escherichia coli,Escherichia coli,"J Mol Biol 355:798 -- 808 Epub 2005 Nov 2022 Wei BL , Brun-Zinkernagel AM , Simecka JW , Pruss BM , Babitzke P , Romeo T Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2226,2227,1461.txt,22,27,1,Escherichia coli,Escherichia coli,Escherichia coli,"Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2227,2228,1461.txt,23,28,1,Escherichia coli,Escherichia coli,Escherichia coli,"Romeo , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2228,2229,1461.txt,24,29,1,Escherichia coli,Escherichia coli,Escherichia coli,"P. , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2229,2230,1461.txt,25,30,1,Escherichia coli,Escherichia coli,Escherichia coli,"Babitzke , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2230,2231,1461.txt,26,31,1,Escherichia coli,Escherichia coli,Escherichia coli,"B.M. , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2231,2232,1461.txt,27,32,1,Escherichia coli,Escherichia coli,Escherichia coli,"Pruss , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2232,2233,1461.txt,28,33,1,Escherichia coli,Escherichia coli,Escherichia coli,"J.W. , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2233,2234,1461.txt,29,34,1,Escherichia coli,Escherichia coli,Escherichia coli,"Simecka , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2234,2235,1461.txt,30,35,1,Escherichia coli,Escherichia coli,Escherichia coli,"A.M. , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2235,2236,1461.txt,31,36,1,Escherichia coli,Escherichia coli,Escherichia coli,"Brun-Zinkernagel , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2236,2237,1461.txt,32,37,1,Escherichia coli,Escherichia coli,Escherichia coli,"B.L. , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2237,2238,1461.txt,33,38,1,Escherichia coli,Escherichia coli,Escherichia coli,"Wei , T. Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
"
2238,2239,1461.txt,34,40,1,Escherichia coli,Escherichia coli,Escherichia coli,Positive regulation of flhDC expression by the RNA-binding protein CsrA of Escherichia coli .
2239,2240,1449.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"While H-NS usually acts as a negative regulator of gene expression , hlyE is not the only example of a CRP-regulated gene whose expression is positively regulated by H-NS ; for example , expression of both the malT and csiD genes in E. coli is stimulated by H-NS ( 8 , 14 ) ."
2240,2241,23.txt,1,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Alekshun M.N. , Levy S.B. Alteration of the repressor activity of MarR , the negative regulator of the Escherichia coli marRAB locus , by multiple chemicals in-vitro .
"
2241,2242,23.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Alteration of the repressor activity of MarR , the negative regulator of the Escherichia coli marRAB locus , by multiple chemicals in-vitro .
"
2242,2243,122.txt,1,1,2,Salmonella;Salmonella;Escherichia coli,S. enterica;enterica;E. coli,Escherichia coli;Salmonella,"B rpoS clpP/pBAD24Ap-UTR-rpoS JF4911 JF4919 JF4920 JF4921 JF4922 UTR +1 -- 566 UTR +1 -- 51 UTR +1 -- 324 UTR +1 -- 433 UTR +1 -- 464 pH 7.7 4.5 7.7 4.5 7.7 4.5 7.7 4.5 7.7 4.5 RpoS 52 -- 324 325 -- 432 433 -- 463 464 -- 566 ABCT BCT CT T clpP : : Tn10 JF4471 dksA : : Mud JF4914 hfq : Does Not Actively Stabilize Û In S. enterica and E. coli , ÛS proteolysis is regulated by ( RssB/Sp .
"
2243,2244,122.txt,2,2,2,Salmonella;Salmonella;Escherichia coli,S. enterica;enterica;E. coli,Escherichia coli;Salmonella,"B rpoS clpP/pBAD24Ap-UTR-rpoS JF4911 JF4919 JF4920 JF4921 JF4922 UTR +1 -- 566 UTR +1 -- 51 UTR +1 -- 324 UTR +1 -- 433 UTR +1 -- 464 pH 7.7 4.5 7.7 4.5 7.7 4.5 7.7 4.5 7.7 4.5 RpoS 52 -- 324 325 -- 432 433 -- 463 464 -- 566 ABCT BCT CT T clpP : : Tn10 JF4471 dksA : : Mud JF4914 hfq : Does Not Actively Stabilize Û In S. enterica and E. coli , ÛS proteolysis is regulated by y the two-component response regulator Mv .
"
2244,2245,644.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Fis is required for full induction of chromosomal S. typhimurium hilA : : Tn5lacZY expression .
"
2245,2246,650.txt,1,1,1,unidentified,not shown,unidentified,"The katE promoter , was hardly repressed by H-NS and was insensitive to YncC , in agreement with in-vivo data -LRB- not shown -RRB- ."
2246,2247,1111.txt,1,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,Isolation of fliA * mutants Spontaneous mutants defective for negative regulation by FlgM were isolated by selecting for expression of s28-dependent promoters in various S. typhimurium mutant strains defective for FlgM export .
2247,2248,1663.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"siiE , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
2248,2249,1139.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium;S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"wild-type strains of S. typhimurium were indistinguishable , as were inactivation of the FliA-regulated flagellin gene fliC in an flgM S. typhimurium mutant resulted in a virulent phenotype"
2249,2250,452.txt,1,3,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance .
"
2250,2251,452.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"The ugtL and pmrA genes mediate PhoP-controlled resistance to polymyxin B. A. Percentage survival of wild-type ( 14028s ) , phoP ( MS7953s ) and ugtL ( EG13682 ) strains after incubation with polymyxin B ( 1.0 mg ml-1 ) .
"
2251,2252,452.txt,3,5,1,Salmonella,Salmonella,Salmonella,"A phoP mutant is > 20 times more polymyxin B sensitive than a pmrA mutant when bacteria are grown in low Mg2 + and > 20 times more sensitive than wild-type Salmonella when bacteria are grown in the presence of Fe3 + ( Wosten et al. , 2000 ) , indicating that a PhoP-regulated PmrA-independent gene ( s ) participate ( s ) in polymyxin B resistance .
"
2252,2253,1850.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lrp , activates transcription of the fim operon in Salmonella enterica serovar Typhimurium via the fimZ regulatory gene .
"
2253,2254,1850.txt,2,2,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lrp , activates transcription of the fim operon in Salmonella enterica serovar Typhimurium via the fimZ regulatory gene .
"
2254,2255,1850.txt,3,3,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lrp , activates transcription of the fim operon in Salmonella enterica serovar Typhimurium via the fimZ regulatory gene .
"
2255,2256,1850.txt,4,4,1,Salmonella,Salmonella,Salmonella,"a global gene regulator controls genes in Salmonella , among which fimZ was shown to be activated by Lrp
"
2256,2257,1850.txt,5,5,1,Salmonella,Salmonella,Salmonella,"a global gene regulator controls a variety in Salmonella , among which fimZ was shown to be activated by Lrp
"
2257,2258,1850.txt,6,6,1,Salmonella,Salmonella,Salmonella,"a global gene regulator controls genes in Salmonella , among which fimZ was shown to be activated by Lrp
"
2258,2259,1850.txt,7,7,1,Salmonella,Salmonella,Salmonella,"a global gene regulator controls a variety in Salmonella , among which fimZ was shown to be activated by Lrp
"
2259,2260,1850.txt,8,8,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lrp , activates transcription of the fim operon in Salmonella enterica serovar Typhimurium via the fimZ regulatory gene .
"
2260,2261,1850.txt,9,10,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Lrp , activates transcription of the fim operon in Salmonella enterica serovar typhimurium via the fimZ regulatory gene ."
2261,2262,1688.txt,1,8,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Calva E LeuO positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Calva E Negative osmoregulation of the Salmonella ompS1 porin independently of OmpR in an hns background .
"
2262,2263,1688.txt,2,9,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella,Salmonella;Salmonella enterica;enterica;Typhi;Salmonella,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Fernandez-Mora M , Puente JL LeuO positively regulate the Salmonella enterica serovar Typhi Flores-Valdez MA , Puente JL Negative osmoregulation of the Salmonella ompS1 porin independently of OmpR in an hns background .
"
2263,2264,1688.txt,3,16,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhi,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In Salmonella enterica serovar Typhi , LeuO activates the expression of ompS1 ."
2264,2265,309.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"glpF , are activated by CRP-cAMP in E. coli ."
2265,2266,1845.txt,1,1,1,Salmonella,Salmonella,Salmonella,"ZupT determines changes in intracellular zinc concentration of Lack Previous studies have shown that zinT are coregulated by Zur and that ZinT accumulation is strongly induced by EDTA and repressed by zinc .23 The addition of 0.5 μM ZnSO4 to the culture medium causes the complete abrogation of ZinT accumulation in a wild type Salmonella strai
"
2266,2267,1845.txt,2,2,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"As zinT expression is under the direct control of Zur , the main transcriptional regulator strongly support the hypothesis that the absence of zupT further reduces the ability of Salmonella enterica to import zinc from the environment ."
2267,2268,1851.txt,1,1,2,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,Genetic evidence has implicated HU in the control of SPI-1 virulence gene expression while IHF has been shown to bind to the promoter region of the spvR regulatory virulence gene on the 96-kb plasmid of S. Typhimurium where it has a positive effect in stationary-phase .
2268,2269,1879.txt,1,1,1,unidentified,unknown,unidentified,"Two of these loci , STM4118 , hereafter called cptA , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2269,2270,1879.txt,2,2,1,unidentified,unknown,unidentified,"Two of these loci , STM4118 , hereafter called cptA , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2270,2271,1879.txt,3,3,1,unidentified,unknown,unidentified,"Two of these loci , yijP , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2271,2272,1879.txt,4,4,1,unidentified,unknown,unidentified,"Two of these loci , yijP , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2272,2273,1879.txt,5,5,1,unidentified,unknown,unidentified,"Two of these loci , pmrC , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2273,2274,1879.txt,6,6,1,unidentified,unknown,unidentified,"Two of these loci , pmrC , have been previously shown to be regulated by PmrA , while the role of PmrA-PmrB in the regulation of STM3635 was unknown .
"
2274,2275,453.txt,1,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhi,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"The results of our experiments concur with the concept that H-NS represses the expression of assT in Salmonella serovar Typhi .
"
2275,2276,453.txt,2,4,6,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmo;Salmo;Salmo;Salmo;Salmo-nella;Typhimurium,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris;Salmonella enterica subsp. enterica serovar Typhimurium,"Previous studies also showed that assT are repressed by H-NS in Salmo-nella serovar Typhimurium .
"
2276,2277,453.txt,3,6,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Since previous reports have shown that H-NS negatively regulates assT transcription in S. Typhi IMSS-1 , the assT transcriptional-fusions were analyzed in an hns background , in N-minimal-medium .
"
2277,2278,1886.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , expression of ygbA is repressed by the oxygen sensitive regulator Fnr ."
2278,2279,1892.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2279,2280,1104.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"RamA induction of tolC by conditioned-medium of E. coli .
"
2280,2281,1110.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In support of this explanation , inactivation of the histone-like protein H-NS , has been shown to abrogate the requirement of the rpoS gene for expression of curli by E. coli K-12 ."
2281,2282,1676.txt,1,1,1,unidentified,not shown,unidentified,"On the other hand , ArcZ contributes indirectly to csgD expression as the direct ArcZ target tpx contributes to downregulation of CsgD levels -LRB- data not shown -RRB- ."
2282,2283,2196.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"To investigate the contribution of the ClpXP protease to the virulence of serovar Typhimurium we initially cloned the clpX operon from the pathogenic strain serovar Typhimurium x3306
"
2283,2284,2182.txt,1,1,1,Salmonella,Salmonella,Salmonella,"csrA encodes the CsrA regulator of Salmonella pathogeni-city
"
2284,2285,2182.txt,2,2,1,Salmonella,Salmonella,Salmonella,csrA encodes the CsrA regulator of Salmonella pathogeni-city
2285,2286,137.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2286,2287,22.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"Research A Proteomic Analysis Reveals Differential S - Regulation of the Dependent yciGFE Locus by H-NS in Salmonella r , and Françoise Norel § Norel § ¶ ‡ The stationary-phase s controls a regulon required for general stress resistance of the closely related enterobacteria Salmonella and Esch .
"
2287,2288,22.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"Our results indicate that differences between E. coli K-12 , in the architecture of cis-acting regulatory sequences upstream of pyciG , contribute to the differential regulation of the yciGFE -LRB- katN -RRB- genes by H-NS in these two enterobacteria .
"
2288,2289,22.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Our results indicate that differences between Salmonella , in the architecture of cis-acting regulatory sequences upstream of pyciG , contribute to the differential regulation of the yciGFE -LRB- katN -RRB- genes by H-NS in these two enterobacteria .
"
2289,2290,22.txt,4,5,1,Escherichia coli,E. coli,Escherichia coli,"H-NS are also able to bind to the promoter region of the E. coli K-12 yciGFE genes .
"
2290,2291,22.txt,5,6,1,Salmonella,Salmonella,Salmonella,"However , the sequence , the length , , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
2291,2292,22.txt,6,7,1,Salmonella,Salmonella,Salmonella,"However , the position of H-NS binding regions , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
2292,2293,22.txt,7,8,1,Salmonella,Salmonella,Salmonella,"However , the position of the McbR/YncC , relative to the yciGFE promoter , are different in Salmonella , resulting in differential mechanisms of regulation of these genes by H-NS .
"
2293,2294,22.txt,8,9,2,Escherichia coli;Salmonella,E. coli;Salmonella,Escherichia coli;Salmonella,"It is remarkable that in E. coli K-12 , regulation of yciGFE by H-NS are intimately linked , whereas in Salmonella , YncC directly activates transcription
"
2294,2295,22.txt,9,10,1,Escherichia coli,Escherichia coli,Escherichia coli,"A proteomic analysis reveals differential regulation of the S-dependent yciGFE locus by H-NS in Escherichia coli K-12 .
"
2295,2296,22.txt,10,11,1,Salmonella,Salmonella,Salmonella,A proteomic analysis reveals differential regulation of the S-dependent yciGFE locus by H-NS in Salmonella .
2296,2297,1306.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The trehalose synthesis gene otsA is regulated by RpoS in S. typhimurium
"
2297,2298,731.txt,1,1,2,Salmonella;unidentified,Salmonella;unknown,unidentified;Salmonella,"Network Analyses of Functional Associations and/or Interactions Among ArcA-Regulated Proteins -- To further under ¬ Classification of differentially expressed Salmonella proteins in the arcA mutant according to Clusters of Orthologous Groups ( COGs ) Number of Proteins ArcA-ArcA-repressed activated 34 10 20 12 2 8 10 6 0 4 8 4 74 44 0 14 4 5 0 2 8 3 6 1 4 0 Nucleotide metabolism and transport Carbohydrate metabolism and transport Coenzyme metabolism Lipid metabolism a Metabolism Translation Transcription Replication and repair Cell wall/membrane/envelop biogenesis Cell motility Post-translational modification , protein turnover , chaperone functions Inorganic ion transport and metabolism 7 6 Secondary structure 4 1 Signal transduction 11 3 Intracellular trafficking and secretion 3 1 General functional prediction only 8 7 Function unknown 41 28 a The bolded functional category contains a summary of the unbolded COG functional groups above associated with metabolism .
"
2298,2299,902.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhi where StpA represses only in an hns background
"
2299,2300,902.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhi where StpA represses only in an hns background
"
2300,2301,2021.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Multiple regulators of hmp gene of Salmonella enterica serovar Typhimurium include RamA .
2301,2302,916.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Felis catus,SL1344;SL1344;cat,Felis catus;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,Filled bars indicate the percentage of genes more highly expressed in SL1344 than in the fis mutant ( i.e. considered as Fis-activated ) ; hatched bars represent the percentage of genes more highly expressed in the SL1344fis : : cat mutant than in the wild-type ( considered as Fis-repressed ) .
2302,2303,1500.txt,1,5,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,strain SL;SL1344;S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium,"MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of the csgD gene in S. typhimurium .
"
2303,2304,1500.txt,2,6,3,Sediminispirochaeta sinaica;Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli,strain SL;SL1344;E. coli,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Escherichia coli;Sediminispirochaeta sinaica,"MlrA transcription is defective in strain SL1344 The mlrA gene has been identified as a positive regulator of the csgD gene in E. coli .
"
2304,2305,1500.txt,3,7,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ogasawara , H. ; Yamamoto , K. ; Ishihama , A. Regulatory role of MlrA in transcription activation of csgD , the master regulator of biofilm formation in Escherichia coli .
"
2305,2306,1500.txt,4,8,1,unidentified,unknown,unidentified,"Under the influence of unknown environmental signals , MlrA induces the csgD expression .
"
2306,2307,1500.txt,5,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The direct regulation of csgD expression by MlrA in S. Typhimurium needs to be experimentally confirmed .
"
2307,2308,1500.txt,6,11,1,Escherichia coli,Escherichia coli,Escherichia coli,"Ogasawara H , Yamamoto K , Ishihama A. Regulatory role of MlrA in transcription activation of csgD , the master regulator of biofilm formation in Escherichia coli .
"
2308,2309,2009.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella specific,Salmonella,"Salmonella specific STM1697 binds to FlhD , a component of FlhDC , the master transcription regulator of flagella biosynthesis .
"
2309,2310,2009.txt,2,2,1,Salmonella;Salmonella,Salmonella;Salmonella specific,Salmonella,"Salmonella specific STM1697 binds to FlhD , a component of FlhDC , the master transcription regulator of flagella biosynthesis .
"
2310,2311,527.txt,1,1,1,Salmonella,Salmonella,Salmonella,"We report here that the silencing proteins H-NS are the main negative regulators of ompS1 expression in Salmonella .
"
2311,2312,527.txt,2,2,1,Salmonella,Salmonella,Salmonella,"We report here that the silencing proteins H-NS are the main positive regulators of ompS1 expression in Salmonella .
"
2312,2313,527.txt,3,12,1,Salmonella,Salmonella,Salmonella,"Moreover it has been reported that the silencing proteins H-NS are the main negative regulators of ompS1 expression in Salmonella .
"
2313,2314,527.txt,4,13,1,Salmonella,Salmonella,Salmonella,Moreover it has been reported that the silencing proteins H-NS are the main positive regulators of ompS1 expression in Salmonella .
2314,2315,533.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Genes previously characterised as OmpR-regulated with decreased levels of expression in S. Typhi Ty2 ompR mutants were tviABCDE , vexABCDE , ompC and ompS ."
2315,2316,1702.txt,1,1,2,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,plasmid;S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,"Genetic evidence has implicated HU in the control of SPI-1 virulence gene expression while IHF has been shown to bind to the promoter region of the spvR regulatory virulence gene on the 96-kb plasmid of S. Typhimurium where it has a positive effect in stationary-phase .
"
2316,2317,2233.txt,1,1,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;typhimu,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Conversely , two glyoxyate shunt genes under the positive control of CsrA in E. coli , aceB , were induced twofold in the S. typhimu-rium csrA mutant ."
2317,2318,2227.txt,1,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;S. Typhimurium;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Interestingly , Salmonella tehB is not transcriptionally regulated by NsrR ; this study -RRB- , suggesting that both the regulation and function of this protein may have diverged in S. Typhimurium ."
2318,2319,292.txt,1,1,1,Felis catus,cat,Felis catus,"As shown in Fig. 2 , induction of the dominant negative H-NSQ92am domain , but not of WT H-NS , restored the expression of the ssrB-cat 302/478 fusion in the hilD mutant .
"
2319,2320,292.txt,2,2,1,Felis catus,cat,Felis catus,"Induction of H-NSQ92am derepressed ssrAB-cat 55 fusions in the hilD mutant to levels similar to those .
"
2320,2321,292.txt,3,3,1,Felis catus,cat,Felis catus,"Induction of H-NSQ92am derepressed ssrAB-cat 106 in the hilD mutant to levels similar to those .
"
2321,2322,292.txt,4,4,1,Felis catus,cat,Felis catus,Induction of H-NSQ92am derepressed ssrAB-cat 208 in the hilD mutant to levels similar to those .
2322,2323,1060.txt,1,7,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , expression of sodB is activated by Fur via repression of the small RNA RyhB ."
2323,2324,1074.txt,1,1,1,Salmonella,Salmonella,Salmonella,"HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
"
2324,2325,1074.txt,2,2,1,Salmonella,Salmonella,Salmonella,"HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
"
2325,2326,1074.txt,3,3,1,Salmonella,Salmonella,Salmonella,"HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
"
2326,2327,1074.txt,4,4,1,Salmonella,Salmonella,Salmonella,"HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
"
2327,2328,1074.txt,5,5,1,Salmonella,Salmonella,Salmonella,"HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
"
2328,2329,1074.txt,6,6,1,Salmonella,Salmonella,Salmonella,HilD induces expression of Salmonella pathogenicity island 2 genes by displacing the global negative regulator H-NS from ssrAB .
2329,2330,286.txt,1,1,1,Salmonella,Salmonella,Salmonella,"PtsJ from Salmonella typhimur-ium controls the expression of the pdxK gene
"
2330,2331,1921.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"S. Typhimurium virK is positively regulated by PhoP/PhoQ .
"
2331,2332,537.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Notably , our observation that deletion of all of the IS200 copies in S. Typhimurium impacted on the expression of prgH not under the control of InvF is consistent with tnpA producing either a multi-functional regulatory RNA or , as in the case of IS1341 , multiple regulatory sRNAs .
"
2332,2333,523.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"AdaST , was found to be a weak activator of expression from the ada promoter of E. coli .
"
2333,2334,523.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"that AdaST can activate ada transcription in E. coli to some extent
"
2334,2335,245.txt,1,1,1,Homo sapiens,human,Homo sapiens,"It has been shown recently that the TviA regulatory protein controls transcription of the flagellin gene fliC , thereby reducing TLR5-mediated IL-8 production in human intestinal epithelial cells by reducing flagellin secretion ."
2335,2336,2031.txt,1,3,2,Salmonella;Salmonella enterica;Salmonella,Salmonella;Salmonella enterica;enterica,Salmonella enterica;Salmonella,"Hirsch M , Elliot T. Fis regulates transcriptional induction of rpoS in Salmonella enterica .
"
2336,2337,1510.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"that McbR are both able to induce expression of katN locus in E. coli K-12
"
2337,2338,1510.txt,2,2,1,Salmonella,Salmonella,Salmonella,that McbR are both able to induce expression of katN locus in Salmonella
2338,2339,1289.txt,1,1,2,Salmonella;Salmonella;unidentified plasmid,Salmonella;Salmonella;plasmid,Salmonella;unidentified plasmid,"Gene targets included : 16S rDNA ( Lin and Tsen 1996 ) , a Salmonella pathogenicity island I virulence gene ( hilA ) ( Guo et al. 2000 ) , Salmonella enterotoxin gene ( stn ) ( Makino et al. 1999 ) , invA gene ( Ferretti et al. 2001 ) , Fur-regulated gene ( iroB ) ( Bäumler et al. 1997 ) , histidine transport operon ( Cohen et al. 1993 ) , the junction between sipB and sipC virulence genes ( sipB-sipC ) ( Carlson et al. 1999 ) , a Salmon-ella-specific repetitive DNA fragment ( Jitrapakdee et al. 1995 ) , and a multiplex targeting invA gene and spvC gene of the virulence plasmid ( invA/spvC ) ( Chiu and Ou 1996 ) .
"
2339,2340,26.txt,1,36,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance .
"
2340,2341,26.txt,2,41,1,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"The ugtL and pmrA genes mediate PhoP-controlled resistance to polymyxin B. A. Percentage survival of wild-type ( 14028s ) , phoP ( MS7953s ) and ugtL ( EG13682 ) strains after incubation with polymyxin B ( 1.0 mg ml-1 ) .
"
2341,2342,26.txt,3,42,1,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"The ugtL and pmrA genes mediate PhoP-controlled resistance to polymyxin B. A. Percentage survival of wild-type ( 14028s ) , phoP ( MS7953s ) and ugtL ( EG13682 ) strains after incubation with polymyxin B ( 1.0 mg ml-1 ) .
"
2342,2343,26.txt,4,46,1,Salmonella,Salmonella,Salmonella,"Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
"
2343,2344,26.txt,5,47,1,Salmonella,Salmonella,Salmonella,"Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
"
2344,2345,26.txt,6,48,1,Salmonella,Salmonella,Salmonella,"Shi Y , Groisman E-A Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
"
2345,2346,26.txt,7,49,1,Salmonella,Salmonella,Salmonella,"Shi Y , Groisman EA Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
"
2346,2347,26.txt,8,50,1,Salmonella,Salmonella,Salmonella,"Shi Y , Groisman EA Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
"
2347,2348,26.txt,9,52,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ugtL are regulated by a similar mechanism , involving the response regulator of the PhoP/PhoQ two-component system .
"
2348,2349,26.txt,10,53,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ugtL are regulated by a similar mechanism , involving the response regulator of the PhoP/PhoQ two-component system .
"
2349,2350,26.txt,11,54,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ugtL are regulated by a similar mechanism , involving PhoP .
"
2350,2351,26.txt,12,56,1,Salmonella,Salmonella,Salmonella,Transcriptional control of the antimicrobial peptide resistance ugtL gene by the Salmonella PhoP .
2351,2352,866.txt,1,1,1,unidentified,unknown,unidentified,"In addition , the PTS permease STM4538 is positively involved in regulation of CadC proteolysis through an unknown mechanism ."
2352,2353,2145.txt,1,3,1,Salmonella,Salmonella,Salmonella,"PhoP upregulates the expression of SPI-2 by directly activating transcription of ssrB , therefore PhoP is indispensible for Salmonella within phagosomes ."
2353,2354,32.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,Transcription of the hilE gene is activated by FimZY in serovar Typhimurium .
2354,2355,682.txt,1,3,1,Salmonella,Salmonella,Salmonella,"In vitro transcription experiments with purified Crl protein of Salmonella showed that Crl stimulates S-dependent transcription at the adrA promoters .
"
2355,2356,2179.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"ompR In E. coli , OmpR is clearly involved in the cellular response to osmotic-stress _ mediating the reciprocal osmotic control of ompC
"
2356,2357,2179.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"ompR In E. coli , OmpR is clearly involved in the cellular response to osmotic-stress _ mediating the reciprocal osmotic control of ompC
"
2357,2358,2179.txt,3,6,1,Salmonella,Salmonella,Salmonella,"The two-component regulatory system OmpR = EnvZ regulates ompC in response to osmolarity changes in Salmonella .
"
2358,2359,2179.txt,4,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Genes previously characterised as OmpR-regulated with decreased levels of expression in S. Typhi Ty2 ompR mutants were tviABCDE , vexABCDE , ompC and ompS .
"
2359,2360,2179.txt,5,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"These results support the model where the LtrR protein directly induces ompR expression , upon which OmpR binds to the regulatory region of ompC to induce their synthesis in S. Typhi IMSS-1 .
"
2360,2361,2179.txt,6,10,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"ompC are required for resistance to the bile salt sodium deoxycholate in S. Typhi We have shown that LtrR has a role in the synthesis of the major outer membrane proteins OmpF and OmpC through its direct regulation of OmpR .
"
2361,2362,696.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , TdcR overexpression increased tdcA expression under both conditions ."
2362,2363,1302.txt,1,1,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance ."
2363,2364,2186.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : a phoN fliC fljB mutant , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion .
"
2364,2365,2186.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : tviA mutant fliC fljB mutant , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion ."
2365,2366,133.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2366,2367,655.txt,1,6,1,Escherichia coli,E. coli,Escherichia coli,"It is well known that in E. coli , RpoS controls the expression of katE to oxygen under nutrient-limiting conditions .
"
2367,2368,655.txt,2,7,1,Escherichia coli,E. coli,Escherichia coli,"It is well known that in E. coli , RpoS controls the expression of katE to water under nutrient-limiting conditions .
"
2368,2369,655.txt,3,8,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"It is well known that in S. Typhimurium , RpoS controls the expression of katE to oxygen under nutrient-limiting conditions .
"
2369,2370,655.txt,4,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"It is well known that in S. Typhimurium , RpoS controls the expression of katE to water under nutrient-limiting conditions ."
2370,2371,1128.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium;S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Results Changes in S. Typhimurium gene expression after chromosomal insertion of tviA In S. Typhi , TviA-regulated genes have been identified and encompass the flagella regulon and genes encoding T3SS-1 [ 8 ] .
"
2371,2372,1128.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,typhoidal;S. Typhimurium;Typhimurium;S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"To determine how TviA affects gene expression in a non-typhoidal serotype , the tviA gene was introduced into the S. Typhimurium chromosome and the gene expression profile compared to a published gene expression profile of TviA-regulated genes in S. Typhi [ 8 ] ."
2372,2373,1882.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"that YncC are both able to induce expression of the yciGFE locus in E. coli K-12
"
2373,2374,1882.txt,2,2,1,Salmonella,Salmonella,Salmonella,that YncC are both able to induce expression of the yciGFE locus in Salmonella
2374,2375,1672.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2375,2376,480.txt,1,4,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : phoP .
"
2376,2377,480.txt,2,5,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : phoP .
"
2377,2378,480.txt,3,7,1,unidentified plasmid,plasmid,unidentified plasmid,"To distinguish between these alternatives , we first analyzed the expression of mgtA , pcgL , mgtC , and pmrC as an indirectly PhoP-regulated gene ( 21 , 43 ) in a phoP : : Tn10 strain , expressing PhoP from the IPTG-regu-lated plasmid pEG9014 .
"
2378,2379,480.txt,4,10,3,Salmonella;Salmonella enterica;Salmonella;unidentified plasmid,Salmonella;Salmonella enterica;enterica;plasmid,Salmonella enterica;Salmonella;unidentified plasmid,"Summary In Salmonella enterica , the PhoP -- PhoQ two-component system governs resistance to structurally different antimicrobial peptides including the alphahelical magainin 2 , the b-sheet defensins and the cyclic lipopeptide polymyxin B. To identify the PhoP-regulated determinants mediating peptide resistance , we prepared a plasmid library from a phoP mutant , introduced it into a phoP mutant and selected for magainin-resistant clones .
"
2379,2380,480.txt,5,11,1,Salmonella,Salmonella,Salmonella,"The ugtL gene mediates polymyxin B resistance independently of the PmrA-PmrB system phoP Salmonella are > 20 times more polymyxin sensitive than a pmrA mutant when bacteria are grown in low ygjU 3394555 3392617 rfaB rfaI 3914096 3915562 slsA STM3760 cigR 3959077 3960805 rhaT rhaR 4260472 4262386 STM0725 STM0726 STM0724 792487 790384 Mg2 + ( Wosten et al. , 2000 ) , indicating that a PmrA-inde-pendent PhoP-regulated gene ( s ) is necessary for poly-myxin resistance .
"
2380,2381,480.txt,6,14,1,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,14028s,Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"The ugtL and pmrA genes mediate PhoP-controlled resistance to polymyxin B. A. Percentage survival of wild-type ( 14028s ) , phoP ( MS7953s ) and ugtL ( EG13682 ) strains after incubation with polymyxin B ( 1.0 mg ml-1 ) .
"
2381,2382,480.txt,7,15,3,Iris germanica;Salmonella enterica subsp. enterica serovar Typhimurium 14028S;Iris germanica;Iris germanica;unidentified,FLAG;14028s;flag;flag;unknown,Salmonella enterica subsp. enterica serovar Typhimurium 14028S;unidentified;Iris germanica,"% surviva A B C 100 10 1 r r to to gtL c c u ve ve p e L tL + + + typ gt ug u-ild w pe P y o-t h ld p w i L e oP rA gtL h m u p p A r m p gt u yp-t ld w i A Mg2 + L L L H b-galactosidase activity YqjA-FLAG w ild-type 14028s p h o yqjA-flag P B yqjA w 10µM Mg2 + 2 + - flag ; phoP 10mM Mg ild-type 5 0 40 p Discussion The PhoP -- PhoQ regulatory system controls resistance to a variety of structurally different antimicrobial peptides ( Groisman et al. , 1992 ) , but the identity of the PhoP-regulated determinants mediating peptide resistance has remained largely unknown .
"
2382,2383,480.txt,8,16,1,Salmonella,Salmonella,Salmonella,"A phoP mutant is > 20 times more polymyxin B sensitive than a pmrA mutant when bacteria are grown in low Mg2 + and > 20 times more sensitive than wild-type Salmonella when bacteria are grown in the presence of Fe3 + ( Wosten et al. , 2000 ) , indicating that a PhoP-regulated PmrA-independent gene ( s ) participate ( s ) in polymyxin B resistance .
"
2383,2384,480.txt,9,18,3,Methanosarcina barkeri;unidentified plasmid;Cloning vector pUC19,strain MS;plasmid;plasmid pUC19,Cloning vector pUC19;Methanosarcina barkeri;unidentified plasmid,"To identify PhoP-regulated genes mediating magainin 2 resistance , we prepared a genomic library from the phoP mutant strain MS7953s in the multicopy number plasmid pUC19 ( Norrander et al. , 1983 ) , introduced the library into the same phoP mutant and exposed the transformants to magainin 2 ( see Experimental procedures ) .
"
2384,2385,480.txt,10,20,1,Escherichia coli;Escherichia coli,Escherichia coli;Escherichia coli,Escherichia coli,"These results were unexpected because acid resistance genes were not identified as PhoP-regulated genes in two previous microarray experiments that compared expression of wild-type and phoP Escherichia coli strains ( 14 , 35 ) nor had mutations in phoP been uncovered in screenings for acid regulatory genes in Escherichia coli .
"
2385,2386,480.txt,11,38,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The qPCR assay demonstrated that both K201Q and K201A mutations led to significant transcriptional reduction of phoP and PhoP-regulated genes compared with the wild type strain , while K201R mimicking non-acetylated lysine residue activated the transcription of these genes dramatically ( Fig 3C ) , suggesting acetylation of K201 is involved in regulating the binding of PhoP to its DNA site and thus its ability to regulate its regulon in S. Typhimurium in-vivo ."
2386,2387,1114.txt,1,2,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The ugtL gene is part of a Salmonella-specific gene cluster that includes the PhoP-activated pcgL gene ( 22 ) and the sifB gene , which is expressed in response to the low Mg2 conditions that normally activate the PhoP/PhoQ system ( 23 ) .
"
2387,2388,1114.txt,2,7,1,Salmonella,Salmonella,Salmonella,"One of the clones harboured the PhoP-activated ugtL gene , deletion of which rendered Salmonella susceptible to magainin 2 and polymyxin B , but not defensin HNP-1 .
"
2388,2389,1114.txt,3,8,2,Salmonella;Salmonella;unidentified,Salmonella;Salmonella-specific;unknown,unidentified;Salmonella,"Three of the plasmids harboured two complete Salmonella-specific open reading frames ( ORFs ) : ugtL , a PhoP-activated gene of unknown function ( Hilbert et al. , 1999 ) ; and STM1600 , an uncharacterized ORF .
"
2389,2390,1114.txt,4,11,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"The ugtL gene was first identified as part of a Salmonella-specific DNA region harbouring the PhoP-activated pcgL gene , which encodes a D-Ala-D-Ala dipeptidase ( Hilbert et al. , 1999 ) .
"
2390,2391,1114.txt,5,12,2,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,SL1344;14028s,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella enterica subsp. enterica serovar Typhimurium 14028S,"We determined that a ugtL pmrA double mutant was as susceptible to polymyxin B as a phoP mutant ( Fig. 3C ) , which suggests that both types of lipid-A modifications may operate at the same time and argues against the participation of other PhoP-regulated genes in resistance to polymxyin B. Thus , the increased polymyxin B susceptibility reported for mutants defective in the PhoP-activated mig-14 , virK and somA genes may be characteristic of the SL1344 genetic background used in those studies ( Brodsky et al. , 2002 ; Detweiler et al. , 2003 ) because derivatives of the 14028s strain deleted for the mig-14 gene or harbouring a MudJ transposon insertion in the virK gene retained wild-type resistance to both polymxyin B and magainin 2 ( our unpublished results ) .
"
2391,2392,1100.txt,1,1,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Escherichia coli,Salmonella;S. Typhimurium;Typhimurium;E. coli,Escherichia coli;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Together these results indicate that the csrA expression level in Salmonella is controlled by RpoS , consistent with previous observations in S. Typhimurium , E. coli and Er .
"
2392,2393,494.txt,1,3,1,unidentified,not shown,unidentified,"The unique pattern of expression of phoP was also found not to be attributable to coordinate regulation by PhoPQ ( not shown ) .
"
2393,2394,494.txt,2,9,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"Both S. Typhi PhoPQ directly control expression of phoP itself , .
"
2394,2395,1666.txt,1,5,1,Salmonella,Salmonella,Salmonella,"The pagD and pagC genes are PhoP-activated genes ( 9 ) located next to each other in the Salmonella chromosome but transcribed in opposite directions from a shared intergenic region .
"
2395,2396,1666.txt,2,6,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"The PhoP-activated gene C ( pagC ) promoter of Salmonella is an inducible promoter , which is inhibited by Mg2 + in-vitro and activated after Salmonella phagocytosis by macrophages and dendritic cells in-vivo [ 52,53 ] .
"
2396,2397,1666.txt,3,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,"The PhoP-activated gene pagC regulated by the PhoP/PhoQ system was identified as an IVI virulence protein in S. Typhi , and the PagC antibody was detected in sera from 11 of 14 patients , which shows that it has the potential to be developed as a diagnostic antigen ( 12 ) .
"
2397,2398,1666.txt,4,8,1,Salmonella,Salmonella,Salmonella,"Distinct temporal expression of PhoP-activated genes in response to mildly acidic pH and low Mg2 + We examined the mRNA levels of the PhoP-activated genes pagC and pagK at 2 h and 4 h after Salmonella was shifted from non-inducing conditions for the PhoQ protein to media containing either mildly acidic pH or low ( i.e. , 10 μM ) Mg2 + .
"
2398,2399,1855.txt,1,2,1,Escherichia coli,E. coli,Escherichia coli,"While Rob appears to be an important positive regulator of acrAB in E. coli , we present data .
"
2399,2400,1855.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"Rob has been demonstrated to directly regulate transcription of acrAB in E. coli .
"
2400,2401,1855.txt,3,4,1,Salmonella,Salmonella,Salmonella,"Other regulators of Rob did not contrib-ute to acrAB induction by indole in Salmonella .
"
2401,2402,1855.txt,4,5,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , the transcription of acrAB is controlled by Rob .
"
2402,2403,1855.txt,5,6,1,Escherichia coli,E. coli,Escherichia coli,"the Rob protein _ involved in regulation of acrAB in E. coli
"
2403,2404,1855.txt,6,9,1,Escherichia coli,E. coli,Escherichia coli,"the Rob protein 34 _ involved in the regulation of acrAB in E. coli
"
2404,2405,1855.txt,7,10,1,Salmonella,Salmonella,Salmonella,"For example , acrAB transcription in Salmonella is controlled by Rob ."
2405,2406,1869.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"This positive control must be mediated by binding of the S. typhimurium Fur protein to the flhD promoter as indicated by the fact that this promoter tests positive in a Fur titration assay .
"
2406,2407,1869.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"This result demonstrates that the Fur protein must bind to the S. typhimurium flhD promoter .
"
2407,2408,1869.txt,3,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Moreover , the S. typhimurium flhD master operon , is positively regulated by Fur through an iron-independent mechanism ."
2408,2409,443.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , five transcription factors have been implicated : hmp transcription is activated by MetR .
"
2409,2410,443.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , five transcription factors have been implicated : hmp transcription is activated by MetR .
"
2410,2411,443.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by S-nitrosoglutathione : nitrosation of modulation of MetR binding to the glyA -- hmp intergenic region .
"
2411,2412,443.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by S-nitrosoglutathione : nitrosation of homocysteine of MetR binding to the glyA -- hmp intergenic region .
"
2412,2413,443.txt,5,5,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by the ` NO releaser 
"
2413,2414,443.txt,6,6,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by the ` NO releaser 
"
2414,2415,443.txt,7,11,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by S-nitrosoglutathione : nitrosation of modulation of MetR binding to the glyA-hmp intergenic region .
"
2415,2416,443.txt,8,12,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by S-nitrosoglutathione : nitrosation of homocysteine of MetR binding to the glyA-hmp intergenic region .
"
2416,2417,443.txt,9,13,1,Escherichia coli,Escherichia coli,Escherichia coli,"A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by the ` NO releaser 
"
2417,2418,443.txt,10,14,1,Escherichia coli,Escherichia coli,Escherichia coli,A novel mechanism for upregulation of the Escherichia coli K-12 hmp gene by the ` NO releaser 
2418,2419,331.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,CRP-cAMP regulates csgD formation by uropathogenic Escherichia coli .
2419,2420,330.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2420,2421,324.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutH RpoS global regulators of Escherichia coli K-12 .
"
2421,2422,324.txt,2,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutH RpoS global regulators of Escherichia coli K-12 .
"
2422,2423,324.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Negative regulation of mutH RpoS global regulators of Escherichia coli K-12 .
"
2423,2424,324.txt,4,4,1,Escherichia coli,Escherichia coli,Escherichia coli,Negative regulation of mutH RpoS global regulators of Escherichia coli K-12 .
2424,2425,1868.txt,1,7,1,Salmonella,Salmonella,Salmonella,"HilA is the key regulator of the Salmonella Pathogenicity Island I. To assess the role of hilA in internal organs in poultry , animals were infected with 10 CFU of its parent strain at day of hatch .
"
2425,2426,1868.txt,2,8,1,Salmonella;Salmonella,Salmonella;Enteritidis,Salmonella,"HilA is the key regulator of the Salmonella Pathogenicity Island I. To assess the role of hilA in internal organs in poultry , animals were infected with 10 CFU of a DhilA mutant of S. 8 Enteritidis .
"
2426,2427,1868.txt,3,9,1,Salmonella,Salmonella,Salmonella,"HilA is the key regulator of the Salmonella Pathogenicity Island I. To assess the role of hilA in colonization of gut , animals were infected with 10 CFU of its parent strain at day of hatch .
"
2427,2428,1868.txt,4,10,1,Salmonella;Salmonella,Salmonella;Enteritidis,Salmonella,"HilA is the key regulator of the Salmonella Pathogenicity Island I. To assess the role of hilA in colonization of gut , animals were infected with 10 CFU of a DhilA mutant of S. 8 Enteritidis .
"
2428,2429,1868.txt,5,13,1,Salmonella,Salmonella,Salmonella,"As HilA is an important transcriptional regulator of SPI-1 , Bohez et al. discovered that Salmonella with hilA mutant is the promising vaccines due to its remarkable role in reducing colonization .
"
2429,2430,1868.txt,6,14,1,Salmonella,Salmonella,Salmonella,"As HilA is an important transcriptional regulator of SPI-1 , Bohez et al. discovered that Salmonella with hilA mutant is the promising vaccines due to its remarkable role in reducing invasion .
"
2430,2431,1840.txt,1,1,1,Salmonella,Salmonella,Salmonella,"somA require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rpoS .
"
2431,2432,1840.txt,2,2,1,Salmonella,Salmonella,Salmonella,"VirK require the response regulator PhoP for expression To determine whether the expression of somA is regulated by transcription factors , the GFP report-ers were transduced into Salmonella strains with mutations in one of the following genes : rpoS .
"
2432,2433,318.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Consistent with a role for RpoS in the regulation of the KatN protein was not produced in the Salmonella rpoS Fig. 2A .
"
2433,2434,318.txt,2,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium SL1344,Salmonella;SL1344,Salmonella enterica subsp. enterica serovar Typhimurium SL1344;Salmonella,"Consistent with a role for RpoS in the regulation of the KatN protein was not produced in the Salmonella rpoS mutant SL1344K .
"
2434,2435,318.txt,3,7,1,Cell fusing agent virus,CFA,Cell fusing agent virus,"They suggested that the difference in the CFA synthase level may be the result of different rpoS alleles , since the expression of another RpoS-regulated gene , poxB , was lower in FT1 than ZK126 ( Wang & Cronan , 1994 ) .
"
2435,2436,318.txt,4,27,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by RhlR ,61 while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2436,2437,318.txt,5,28,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by RhlR ,61 while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2437,2438,318.txt,6,29,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by RhlR ,61 while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2438,2439,318.txt,7,30,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by RhlR ,61 while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2439,2440,318.txt,8,31,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by LasR while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2440,2441,318.txt,9,32,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by LasR while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2441,2442,318.txt,10,33,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by LasR while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2442,2443,318.txt,11,34,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by LasR while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2443,2444,318.txt,12,35,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by QS regulators while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2444,2445,318.txt,13,36,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by QS regulators while coworkers reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2445,2446,318.txt,14,37,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"A study showed the expression of rpoS by QS regulators while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in S. enterica .
"
2446,2447,318.txt,15,38,1,Escherichia coli,E. coli,Escherichia coli,"A study showed the expression of rpoS by QS regulators while Whiteley reported little impact of QS on the transcription of rpoS .62 Our study suggested no QS-based regulation of RpoS in E. coli .
"
2447,2448,1667.txt,1,1,1,Salmonella,Salmonellae,Salmonella,"cbiD , were induced much more than two-fold in the RpoS-mutant than in the wild type Salmonellae ."
2448,2449,1673.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"NagC _ participating with GalS in the repression of galP in E. coli
"
2449,2450,1673.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,NagC _ participating with GalS in the repression of galP in E. coli
2450,2451,1115.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In addition to the autoregulation , the S. Typhimurium rpoE regulon is also likely to be regulated by negative regulation by possibly the cAMP-CRP complex .
"
2451,2452,1115.txt,2,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In addition to the autoregulation , the S. Typhimurium rpoE regulon is also likely to be regulated by negative regulation by possibly the cAMP-CRP complex ."
2452,2453,481.txt,1,1,2,unidentified plasmid;Escherichia coli,plasmid;E. coli,Escherichia coli;unidentified plasmid,"RESULTS AND DISCUSSIONS Screen for Fur-regulated Promoters and Sequence Analyses of DNA Regions Identified by FURTA Fur-regulated promoters and iron binding proteins carried on a plasmid can be identified by transference into E. coli H1717 ( Stojiljkovic et al. , 1994 ) , which carries fhuF < lacZ ; a Fur-regulated gene fusion sensitive to changes in repressor ( Fur-Fe ) þ2 concentration .
"
2453,2454,481.txt,2,2,2,unidentified plasmid;Escherichia coli,plasmid;E. coli,Escherichia coli;unidentified plasmid,"RESULTS AND DISCUSSIONS Screen for Fur-regulated Promoters and Sequence Analyses of DNA Regions Identified by FURTA Fur-regulated promoters and iron binding proteins carried on a plasmid can be identified by transference into E. coli H1717 ( Stojiljkovic et al. , 1994 ) , which carries fhuF < lacZ ; a Fur-regulated gene fusion sensitive to changes in repressor ( Fur-Fe ) þ2 concentration .
"
2454,2455,481.txt,3,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Members of the Fur protein family regulate iron and zinc transport in Escherichia coli and characteristics of the Fur-regulated fhuF protein .
"
2455,2456,481.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"Members of the Fur protein family regulate iron and zinc transport in E. coli and characteristics of the Fur-regulated fhuF protein .
"
2456,2457,640.txt,1,2,1,Terfezia albida,to 15,Terfezia albida,"In the wild type and the hns , lrp , and the activity values for the pKK-51 / 49 fusion ( which contains the promoter region without cis-acting negative elements ) were around 14,000 to 15,000 , supporting the conclusion that H-NS are the main repressors of casA expression .
"
2457,2458,640.txt,2,3,1,Terfezia albida,to 15,Terfezia albida,"In the wild type and the hns , lrp , and double hns/lrp mutants / 49 fusion ( which contains the promoter region without cis-acting negative elements ) were around 14,000 to 15,000 , supporting the conclusion that H-NS are the main repressors of casA expression ."
2458,2459,126.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"In this regard , it has been reported that expression of cysK in E. coli is under the control of a LysR-family transcription factor ."
2459,2460,2193.txt,1,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Overcoming the temperature regulation of Salmonella serovar Typhimurium UMR1 by mutations in STM4264 demonstrated that both gene products act as suppressors of the rdar morphotype expression upstream of CsgD at 37 °C .
"
2460,2461,668.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Regulation of these genes likely happens through StpA-dependent activation of crp expression , as observed in E. coli ."
2461,2462,697.txt,1,2,1,Escherichia coli,Escherichia coli,Escherichia coli,"Forst S , Delgado J , Rampersaud A et al In vivo phosphorylation of OmpR , the transcription activator of the ompF genes in Escherichia coli .
"
2462,2463,1317.txt,1,7,1,Escherichia coli,E. coli,Escherichia coli,"However , E. coli Fur is also known to activate the expression of many genes indirect mechanisms , the latter involving repression of a small regulatory RNA , ryhB .
"
2463,2464,1317.txt,2,8,1,Escherichia coli,E. coli,Escherichia coli,"However , E. coli Fur is also known to activate the expression of many genes direct mechanisms , the latter involving repression of a small regulatory RNA , ryhB .
"
2464,2465,2178.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"NagC _ participating with GalR in the repression of galP in E. coli
"
2465,2466,2178.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,NagC _ participating with GalR in the repression of galP in E. coli
2466,2467,2150.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2467,2468,873.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"Wild-type S. typhimu-rium containing CysB-regulated promoter reporters for sbp , cysP , and cysJ were grown in M9-minimal-medium with sulfate as the sole sulfur source with and without 50 mM methyl viologen to cause mild oxidative-stress ."
2468,2469,867.txt,1,17,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both S. enterica serovar Typhimurium .
"
2469,2470,867.txt,2,18,1,Escherichia coli,E. coli,Escherichia coli,"In summary , our results demonstrate that RflM protein promotes RcsB target specificity for repression of flhDC Discussion Regulation of flagellar synthesis is controlled by the RcsCDB phosphorelay system in both E. coli .
"
2470,2471,867.txt,3,19,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , it has been shown that RcsA , enhan-ces RcsB-dependent repression of flhDC .
"
2471,2472,867.txt,4,20,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , it has been shown that an auxiliary regulatory protein , enhan-ces RcsB-dependent repression of flhDC .
"
2472,2473,867.txt,5,29,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"RcsB is known to repress transcription of flhDC in both S. enterica .
"
2473,2474,867.txt,6,30,1,Escherichia coli,E. coli,Escherichia coli,RcsB is known to repress transcription of flhDC in both E. coli .
2474,2475,720.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The marRAB operon , controls multiple antibiotic resistance in E. coli by production of MarA , a 127-amino-acid protein of the XylS/AraC family of transcriptional activator proteins .
"
2475,2476,708.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"In S. Typhimurium , previous studies have determined that NsrR negatively regulates the expression of the ygbA genes ."
2476,2477,1263.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;unidentified plasmid,S. Typhimurium;Typhimurium;plasmid,unidentified plasmid;Salmonella enterica subsp. enterica serovar Typhimurium,"Chromosomally encoded adrA is not required for curli fimbriae in S. Typhimurium UMR1 Overexpression of AdrA from plasmid pWJB30 enhanced the expression of CsgD .
"
2477,2478,1263.txt,2,2,1,unidentified plasmid,plasmid,unidentified plasmid,"Chromosomally encoded adrA is not required for the expression of CsgD from plasmid pWJB30 enhanced the expression of CsgD .
"
2478,2479,1263.txt,3,7,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"However , we discovered that c-di-GMP , an integral part of the regulatory network promoting CsgD expression in S. Typhimurium , is not required for binding of CsgD to the csgBA and adrA promoters or for CsgD-activated transcription .
"
2479,2480,1505.txt,1,1,2,Salmonella;unidentified plasmid;unidentified plasmid,Salmonella;plasmid;plasmid,Salmonella;unidentified plasmid,"Lrp-regulated genes in Salmonella include fimZ , for type 1 fimbria expression ( 67 ) ; ilvIH , for branched amino-acid biosynthesis ( 93 ) ; hisJ , for D-histidine utilization ( 44 ) ; traJ , for conjugal transfer of virulence plasmid pSLT ( 13 ) ; and pef , for pSLT plasmid-encoded fimbriae ( 74 ) ."
2480,2481,2024.txt,1,8,1,unidentified,not shown,unidentified,"wort _ noting that while overproduction of Fur caused an eightfold increase in hilA expression in low-oxygen conditions , Fur overproduction induced hilA expression only threefold in data not shown
"
2481,2482,907.txt,1,5,1,Salmonella,Salmonella,Salmonella,"Other regulators of SoxS did not contrib-ute to acrAB induction by indole in Salmonella .
"
2482,2483,2030.txt,1,1,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 .
"
2483,2484,2030.txt,2,2,2,Salmonella;Apple stem pitting virus,salmonellae;aspV,Apple stem pitting virus;Salmonella,"in kb ) of salmonellae aspV ( 304.7 ) GEI 0266/0307 ( SPI-6 ) 46.7 42 52.3 STM0272 , STM0291 , safC , sinR STM0274A ( invasol ) , STM0284 ( putative shiga-like toxin A subunit ) , STM0306 ( SlyA-activated ; homologue to sapA involved in resistance to antimicrobial peptides and homologue to putative invasin pagN ) , STM307 ( homologue to Shigella VirG protein ) 51.1 STM1031 , STM1033 , STM1041 , STM1042 pncB ( 1098.2 ) 45.5 52 GEI 1005/1056 ( Gifsy-2 ) STM1044 ( sodC ) , STM1055 ( gtgE , SlyA-activated ) , STM1056 ( msgA homologue ) 47.2 1672 , 1677 orf ( 1757.9 ) 14.0 14 orf ( 2099.7 ) 36.3 40 GEI 1664/1678 GEI 2016/2058 STM1669 ( invC homologue ) 54.8 cobS , pocR , pduK orf ( 2729.0 ) 47.8 53 GEI 2584/2636 ( Gifsy-1 ) 51.6 STM2585A , STM2589 , STM2585 ( pagJ , SlyA-activated gene ; STM2595 , gipA , STM2603 , Navarre et al. , 2005 ) STM2605 , STM2633 52.1 STM2781 ( virK ) fljA ( 2912.6 ) 34.3 19 GEI 2770/2788 STM2780 ( pipB2 ; Navarre et al. , 2005 ) , mig-14 Fig. 3 ."
2484,2485,244.txt,1,1,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. typhimurium;typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Consistent with the situation for E. coli hya , anaerobic control of S. typhimurium hyaB did not require Fnr upstream of the aniC homolog .
"
2485,2486,244.txt,2,2,2,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,E. coli;S. typhimurium;typhimurium,Escherichia coli;Salmonella enterica subsp. enterica serovar Typhimurium,"Consistent with the situation for E. coli hya , anaerobic control of S. typhimurium hyaB did not require Fnr upstream of orf326a ."
2486,2487,1934.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,the OxyR repressor for hemi-methylated GATC sites has been shown to regulate phase variation in the E. coli agn43 gene .
2487,2488,1920.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2488,2489,1075.txt,1,2,1,unidentified plasmid,plasmid,unidentified plasmid,"The polymyxin B susceptibility of the slyA mutant was the same as that exhibited by the ugtL mutant ( Fig. 5A ) and could be complemented to wild-type levels by a plasmid that expressed the ugtL gene from a heterologous promoter ( Fig. 5B ) , suggesting that ugtL is the only SlyA-regulated gene mediating polymyxin B resistance .
"
2489,2490,1075.txt,2,15,1,Salmonella,Salmonella,Salmonella,"Consistently , results from different laboratories showed that SlyA regulates a subset of PhoP-dependent genes , including ugtL , in Salmonella .
"
2490,2491,1075.txt,3,16,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"The S. Typhimurium ugtL are regulated by a similar mechanism , involving the coordinated actions of SlyA .
"
2491,2492,1061.txt,1,3,1,Salmonella;Salmonella,Salmonella;Salmonella-specific,Salmonella,"HilD induces the expression of sinR , in the absence of other Salmonella-specific regulators .
"
2492,2493,1061.txt,2,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"HilD positively regulates sinR in S. Typhimurium .
"
2493,2494,1061.txt,3,6,1,Escherichia coli,E. coli,Escherichia coli,"HilD induces the expression of sinR , in E. coli MC4100 ."
2494,2495,2226.txt,1,1,1,Mrakia cryoconiti,A ( 15,Mrakia cryoconiti,"Both the pmrF operon and pmrE are necessary for the PmrA-PmrB-regulated attachment of aminoarabinose to lipid-A ( 15 , 45 ) .
"
2495,2496,2226.txt,2,2,1,unidentified,not shown,unidentified,"The absence of transcriptional linkage between the RpoN and the PmrA regulons was corroborated because no significant differences were observed when the expression of PmrAcontrolled genes ( pmrI , pmrC , pmrF , and ugd ) was compared either in a RpoN or in a 1 DrpoN strain grown in LB ( exponential or stationary-phase ) or in a low-Mg N-21 minimal-medium , which are PhoP-and PmrA-inducing conditions ( Soncini & Groisman , 1996 ) ( Fig. 3a and data not shown ) .
"
2496,2497,1711.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,Growth phase-regulated expression of bolA of stationary-phase Escherichia coli cells is controlled by the novel sigma factor RpoS .
2497,2498,1077.txt,1,1,2,Escherichia coli;Salmonella;Salmonella,E. coli;Salmonella;Salmonella specific,Escherichia coli;Salmonella,"A set of PhoP-regulated loci , including the phoPQ operon , can be found in other enterobacteria such as E. coli , while other pag genes are Salmonella specific ( 31 ) .
"
2498,2499,1063.txt,1,9,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"PmrA-regulated gene mutants JSG1525 ( yibD ) and JSG1526 ( dgoA ) were as virulent as wild-type Salmonella serovar Typhimurium , so the genes interrupted have no essential role in the infection process ( Table 4 ) .
"
2499,2500,1063.txt,2,10,3,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Mus sp.;Mus sp.,Salmonella;Typhimurium;mice;mice,Mus sp.;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"All PMs mutants identified in this study demonstrated a defect in virulence compared to wild-type Salmonella serovar Typhimurium when administered orally to mice , while the PmrA-regulated gene ( yibD and dgoA ) mutants showed normal virulence in mice .
"
2500,2501,1705.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,QseB regulation of S. Typhi invasion of SPI-1 gene invF .
2501,2502,1936.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Moreover , while in E. coli the expression of dps in logarithmic phase is modulated by the exposition to sources of hydrogen-peroxide -LRB- mediated by OxyR -RRB- , in the stationary-phase its expression is regulated by σ ."
2502,2503,1088.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Distinct temporal expression of PhoP-activated genes in response to mildly acidic pH and low Mg2 + We examined the mRNA levels of the PhoP-activated genes pagC and pagK at 2 h and 4 h after Salmonella was shifted from non-inducing conditions for the PhoQ protein to media containing either mildly acidic pH or low ( i.e. , 10 μM ) Mg2 + .
"
2503,2504,520.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To distinguish between these alternatives , we first analyzed the expression of mgtA , pcgL , mgtC , and pmrC as an indirectly PhoP-regulated gene ( 21 , 43 ) in a phoP : : Tn10 strain , expressing PhoP from the IPTG-regu-lated plasmid pEG9014 .
"
2504,2505,1249.txt,1,1,3,Salmonella;Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella enterica;enterica;Typhimurium,Salmonella enterica;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Transcriptional regulation of sdiA by LeuO in Salmonella enterica serovar Typhimurium .
2505,2506,2026.txt,1,3,1,Salmonella,Salmonella,Salmonella,"SirA of Salmonella both control the csr system by directly activating the csrB gene .
"
2506,2507,1513.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Thus , the TviA-mediated repression of flagellin expression could be recapitulated by introducing the tviA regulatory gene into S. Typhimurium .
"
2507,2508,1513.txt,2,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : tviA mutant Fig. 4A , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion .
"
2508,2509,1513.txt,3,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Both the S. Typhimurium wild type induced processing of caspase-1 , while no caspase-1 cleavage was detected in cells : : tviA mutant SW681 , thus providing direct support for the hypothesis that TviA-mediated repression of flagellin expression can mediate inflammasome evasion ."
2509,2510,736.txt,1,1,1,Solanum lycopersicum,tomato,Solanum lycopersicum,"The oxygen tension within tomato fruits under normal storage conditions , however , has been shown to be near that of ambient air , suggesting the presence of some additional environmental signal for the induction of the Fur regulon in our experiments ."
2510,2511,2146.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2511,2512,25.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,"and Rosner , J.L. Autoactivation of the marRAB multiple antibiotic resistance operon by the MarA transcriptional activator in Escherichia coli .
"
2512,2513,25.txt,2,3,1,Escherichia coli,Escherichia coli,Escherichia coli,"Autoactivation of the marRAB multiple antibiotic resistance operon by the MarA transcriptional activator in Escherichia coli .
"
2513,2514,25.txt,3,4,1,Escherichia coli,Escherichia coli,Escherichia coli,"Autoactivation of the marRAB multiple antibiotic resistance operon by the MarA transcriptional activator in Escherichia coli .
"
2514,2515,25.txt,4,8,1,Escherichia coli,Escherichia coli,Escherichia coli,"Mol Microbiol 44:1611 -- 1624 Martin RG , Jair KW , Wolf RE Jr , Rosner JL Autoactivation of the marRAB multiple antibiotic resistance operon by the MarA transcriptional activator in Escherichia coli .
"
2515,2516,25.txt,5,9,1,Escherichia coli,Escherichia coli,Escherichia coli,Autoactivation of the marRAB multiple antibiotic resistance operon by the MarA transcriptional activator in Escherichia coli .
2516,2517,1301.txt,1,1,1,Salmonella,Salmonella,Salmonella,"In Salmonella , five transcription factors have been implicated : hmp transcription is activated by RamA .
"
2517,2518,1301.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , five transcription factors have been implicated : hmp transcription is activated by RamA ."
2518,2519,1467.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Examination of the sequence revealed that SoxS binds with high affinity in a manner characteristic of class I promoters in the sodA promoters of E. coli .
"
2519,2520,681.txt,1,1,1,Leiostomus xanthurus;Leiostomus xanthurus;Leiostomus xanthurus,spoT;spoT;spoT,Leiostomus xanthurus,"The introduction of mutations in either of rtsAB contributed to reduced invasion gene expression in the these genes reduced hilA expression in both relA spoT strain , we examined the effects of both mutations relA spoT strains , indicating that the loss of hilA expression and overexpression of Lrp was not due to repression by these of a hilA-lacZ fusion in relA spoT strains .
"
2520,2521,681.txt,2,2,1,Leiostomus xanthurus,spoT,Leiostomus xanthurus,"The introduction of mutations in either of rtsAB contributed to reduced invasion gene expression in the these genes reduced hilA expression in both the wild type , we examined the effects of both mutations relA spoT strains , indicating that the loss of hilA expression and overexpression of Lrp was not due to repression by these of a hilA-lacZ fusion in the wild types .
"
2521,2522,19.txt,1,1,1,Escherichia coli,Escherichia coli,Escherichia coli,GcvA interacts with both σ subuni of RNA polymerase to activate e the Escherichia coli gcvB ge .
2522,2523,859.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To circumvent this issue and facilitate the examination of YdcRregulated srfN transcription in-vitro , we further introduced a YdcR-expressing plasmid into the ydcR strain , whose expression is under the control of arabinose .
"
2523,2524,859.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Herein we quantitatively studied the protein expression of a Salmonella mutant lacking ydcR ( ydcR ) within host cells in comparison to that of its parental strain , which provides a powerful means to uncover potential YdcR-regulated proteins under physiological conditions .
"
2524,2525,859.txt,3,4,1,Salmonella;Salmonella,Sal-monella;monella,Salmonella,"To uncover YdcR-regulated proteins , we exploited quantitative proteomics to compare intracellular Sal-monella protein expression between the wild-type and the isogenic ydcR strains .
"
2525,2526,859.txt,4,5,2,Salmonella;Iris germanica,Salmonella;FLAG,Iris germanica;Salmonella,"In contrast , the expression level of PipB did not differ significantly for Salmonella strains chromosomally expressing 3 FLAG-tagged PipB in ydcR deletion backgrounds , indicating the specific regulation of SrfN by YdcR ."
2526,2527,130.txt,1,2,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhi;Typhi,Salmonella enterica subsp. enterica serovar Typhimurium,This result suggested that YgaE does not influence the growth of S. Typhi by the regulation of ompF .
2527,2528,642.txt,1,1,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
2528,2529,642.txt,2,2,1,unidentified,not shown,unidentified,"The tolB effect appears to be specific to the ugd gene because transcription of the PhoP-activated PmrA-dependent pbgP gene and the PhoP-activated PmrA-independent mgtA gene was not affected by the tolB mutation regardless of the presence of functional phoP or pmrA genes ( Fig. 2A ; data not shown ) .
"
2529,2530,1895.txt,1,1,1,Salmonella,Salmonella,Salmonella,"ChbR only binds in Salmonella DNase I footprinting confirmed that NagC bound to a site upstream of chiP as well as in E.
"
2530,2531,1895.txt,2,5,1,Salmonella,Salmonella,Salmonella,"Discussion We have shown that the chiP gene , is under the control of GlcNAc operon repressor , NagC , in Salmonella .
"
2531,2532,1895.txt,3,6,1,Escherichia coli,E. coli,Escherichia coli,"Discussion We have shown that the chiP gene , is under the control of GlcNAc operon repressor , NagC , in both E. coli .
"
2532,2533,1895.txt,4,7,1,Salmonella,Salmonella,Salmonella,"Discussion We have shown that the chiP gene , is under the control of the N-acetylglucosamine operon repressor , NagC , in Salmonella .
"
2533,2534,1895.txt,5,8,1,Escherichia coli,E. coli,Escherichia coli,"Discussion We have shown that the chiP gene , is under the control of the N-acetylglucosamine operon repressor , NagC , in both E. coli .
"
2534,2535,1665.txt,1,2,1,Salmonella,Salmonella,Salmonella,"Although a non-cytotoxic form of polymyxin B -- termed polymyxin B nonapeptide ( Vaara and Vaara , 1983 ) -- could partially protect a Salmonella pmrA mutant from Fe ( III ) - mediated killing ( Chamnongpol et al. , 2002 ) inactivation of the PmrA-activated loci responsible for the lipid-A modification with 4-aminoarabinose ( i.e. pbgP ) or phosphoethanolamine ( i.e. pmrC ) did not render the organism susceptible to Fe ( III ) ( Lee et al. , 2004 ) .
"
2535,2536,1665.txt,2,3,1,Escherichia coli,E. coli,Escherichia coli,"By contrast , Zn2 + has been shown to promote transcription of the pmrA and pmrB genes as well as that of several PmrA-activated genes in E. coli ( Lee et al. , 2005 ) ."
2536,2537,497.txt,1,1,6,Prochilodus marggravii;Salmo platycephalus;Salmo obtusirostris;Salmo ohridanus;Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Salmo;Salmo;Salmo;Salmo;Salmo-nella;enterica;Typhimurium,Salmo platycephalus;Prochilodus marggravii;Salmonella;Salmo ohridanus;Salmo obtusirostris;Salmonella enterica subsp. enterica serovar Typhimurium,"E. Morales , hydrogen-peroxide-induced negative regulation of Salmo-nella enterica serovar Typhimurium ompW by the response regulator ArcA , BMC Microbiol ."
2537,2538,1671.txt,1,1,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in Fig. 4A and Fig. 4B in macrophage cells , as measured by Northern hybridization
"
2538,2539,1671.txt,2,2,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in Fig. 4A and Mx in macrophage cells , as measured by Northern hybridization
"
2539,2540,1671.txt,3,3,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in activating iNOS and Fig. 4B in macrophage cells , as measured by Northern hybridization
"
2540,2541,1671.txt,4,4,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in activating iNOS and Mx in macrophage cells , as measured by Northern hybridization
"
2541,2542,1671.txt,5,5,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in Fig. 4A and Fig. 4B in macrophage cells , as measured by Northern hybridization
"
2542,2543,1671.txt,6,6,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in Fig. 4A and Mx in macrophage cells , as measured by Northern hybridization
"
2543,2544,1671.txt,7,7,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in activating iNOS and Fig. 4B in macrophage cells , as measured by Northern hybridization
"
2544,2545,1671.txt,8,8,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"the gene _ encoding the global regulator of flagellin production , flhC .19 The Salmonella mutant deficient in FlhC expression was as efficient as WT Salmonella in activating iNOS and Mx in macrophage cells , as measured by Northern hybridization"
2545,2546,468.txt,1,1,2,Tacca leontopetaloides;Escherichia coli,Tia;E. coli,Escherichia coli;Tacca leontopetaloides,"The pagN gene is activated by PhoP with the Tia invasins/adhesins of pathogenic E. coli .
"
2546,2547,468.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,The pagN gene is activated by PhoP with the Hek invasins/adhesins of pathogenic E. coli .
2547,2548,1856.txt,1,13,1,Salmonella,Salmonella,Salmonella,"Therefore , SlyA might replace HilD to counteract H-NS-mediated repression of ssrAB when Salmonella is grown in minimal media .
"
2548,2549,332.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"E. coli AraC activates transcription of araJ transcripts in the presence of its inducer , L-arabinose ."
2549,2550,454.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"The absence of consensus sequences for the CytR protein within the udp regulatory region of V. cholerae suggests that reduced CytR regulation of udpPV c was due to the reduced ability of the E. coli CytR protein to bind heterlogous promoters Fig. 3 .
"
2550,2551,454.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"The absence of consensus sequences for the CytR protein within the udp regulatory region of V. cholerae suggests that reduced CytR regulation of udpPYp c was due to the reduced ability of the E. coli CytR protein to bind heterlogous promoters Fig. 3 .
"
2551,2552,454.txt,3,3,1,Escherichia coli,E. coli,Escherichia coli,"The absence of consensus sequences for the CytR protein within the udp regulatory region of Y. pseudotuberculosis suggests that reduced CytR regulation of udpPV c was due to the reduced ability of the E. coli CytR protein to bind heterlogous promoters Fig. 3 .
"
2552,2553,454.txt,4,4,1,Escherichia coli,E. coli,Escherichia coli,"The absence of consensus sequences for the CytR protein within the udp regulatory region of Y. pseudotuberculosis suggests that reduced CytR regulation of udpPYp c was due to the reduced ability of the E. coli CytR protein to bind heterlogous promoters Fig. 3 .
"
2553,2554,327.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2554,2555,455.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"E. coli showed that RpoS production is increased by a crl mutation
"
2555,2556,1857.txt,1,3,1,unidentified plasmid,plasmid,unidentified plasmid,"The polymyxin B susceptibility of the slyA mutant was the same as that exhibited by the ugtL mutant ( Fig. 5A ) and could be complemented to wild-type levels by a plasmid that expressed the ugtL gene from a heterologous promoter ( Fig. 5B ) , suggesting that ugtL is the only SlyA-regulated gene mediating polymyxin B resistance .
"
2556,2557,1857.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"Sensitivity to CAMPs is also regulated by SlyA , a transcriptional regulator ; mutation of slyA renders S. typhimurium highly sensitive to the CAMP polymyxin B .
"
2557,2558,1857.txt,3,5,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"2 to CAMPs is also regulated by SlyA , a transcriptional regulator ; mutation of slyA renders S. typhimurium highly sensitive to the CAMP polymyxin B .
"
2558,2559,1857.txt,4,6,1,Salmonella,Salmonella,Salmonella,"Although slyA mutants are able to invade deep tissues , they are unable to proliferate efficiently within the reticuloendothelial cells of murine hosts , suggesting that Salmonella strains are unable to withstand host cellular antimicrobial mechanisms in the absence of SlyA-regulated genes ."
2559,2560,469.txt,1,1,1,unidentified plasmid,plasmid,unidentified plasmid,"To distinguish between these alternatives , we first analyzed the expression of mgtA , pcgL , mgtC , and pmrC as an indirectly PhoP-regulated gene ( 21 , 43 ) in a phoP : : Tn10 strain , expressing PhoP from the IPTG-regu-lated plasmid pEG9014 .
"
2560,2561,657.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2561,2562,1472.txt,1,1,1,Salmonella;Salmonella,S. enterica;enterica,Salmonella,"Finally , we show that Crp , regulates acs expression in S. enterica .
"
2562,2563,1472.txt,2,2,1,Escherichia coli,E. coli,Escherichia coli,"In E. coli , Crp controls the expression of acs ."
2563,2564,680.txt,1,6,1,Salmonella,Salmonella,Salmonella,"H-NS represses ssrAB as well as many other Salmonella genes .
"
2564,2565,680.txt,2,9,1,Felis catus,cat,Felis catus,"ssrAB-cat 69 indicates that when H-NS is inactivated , the 119/336 region is not able to mediate repression of ssrAB
"
2565,2566,680.txt,3,10,1,Felis catus,cat,Felis catus,"ssrAB-cat 119 indicates that when H-NS is inactivated , the 119/336 region is not able to mediate repression of ssrAB
"
2566,2567,680.txt,4,13,1,Felis catus,cat,Felis catus,"a level of expression higher than that reached by the ssrAB-cat 302/478 fusion _ indicating that the 336/478 region mediates H-NS-indepen-dent repression of ssrAB
"
2567,2568,1314.txt,1,1,1,Leiostomus xanthurus,Spot,Leiostomus xanthurus,"Table 1 Identi cents cation of possible Fis-induced proteins and Fis-repressed proteins by MALDI-TOF Fold changea Spot Protein Gene Group MW ( kDa ) pI Fis-induced proteins Flagella phase-2 # agellin phase-1 # agellin 306.0 2.2 2.1 2.3 2.2 3.0 3.5 2.1 2.9 168.9 2.5 4.75 4.76 6.20 6.32 9.37 5.30 5.87 6.40 5.82 5.37 5.66 52.54 51.34 74.18 53.31 26.60 43.25 50.60 54.03 34.99 31.10 28.56 1 # jB # iC 2 SipA , SPI-1 e ¡ ector protein SseC , SPI-2 translocon SopE2 , SPI-1 e ¡ ector protein EF-Tu lipoamide dehydrogenase mannose 1-phosphate guanylyl transferase mannose-speci cents c enzyme II AB putative sugar binding protein 2-deoxyribose-5-phosphate aldolase 3 SPI sipA sseC sopE2 tufB lpdA manC manX STY2817 deoC 4 5 Translation 6 Sugar metabolism 7 8 9 10 11 Fis-repressed proteins Chaperone Catabolism 0.5 4.83 5.71 5.45 5.43 5.53 6.9 4.50 69.23 32.83 33.35 24.10 23.53 26.17 19.17 DnaK putative aldose 1-epimerase 12 13 14 15 16 17 18 dnaK yeaD 0.43 0.47 0.36 0.48 0.34 0.47 STM4466 pudB adk aphA aacC4 putative carbamate kinase propanediol utilization : polyhedral bodies adenylate kinase class B acid phosphatase 6-N-aminoglycoside acetyltransferase ASCOT ."
2568,2569,1300.txt,1,1,2,Salmonella;Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,S. enterica;enterica;Typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"In S. enterica serovar Typhimurium , LeuO was reported to increase sdiA expression in low levels ."
2569,2570,694.txt,1,1,1,Salmonella,Salmonella,Salmonella,PhoP-P activates transcription from the phoP promoter soon after Salmonella experiences low Mg2 + .
2570,2571,1466.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Additionally , transcription of many genes in SPI-1 declined in Δpat , including the prg ( PhoP-repressed products ) genes prgK , prgJ , prgI , and prgH ( to ) , encoding component of the needle complex ; the sip ( Salmonella invasion protein ) genes sipA , sipD , sipC , and sipB ( approximately ) , encoding translocation machinery component ; and the inv ( invasion ) genes invJ , invI , invC , invB , invA , invE , invG , invF , and invH ( approximately ) , which were essential for invasion of cells ( Supplementary Table 4 ) ."
2571,2572,864.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Nou , X. , Braaten , B. , Kaltenbach , L. , regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of hyaB in Salmonella typhimurium .
"
2572,2573,864.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Nou , X. , Braaten , B. , Kaltenbach , L. , regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of hyaB in Salmonella typhimurium .
"
2573,2574,864.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for anaerobic induction of hyaB in Salmonella typhimurium .
"
2574,2575,864.txt,4,4,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Low , D.A. Differential binding of Lrp to two sets of pap DNA binding sites regulates Pap phase variation in Escherichia Park , K.R. , Giard , J.C. , Eom , J.H. , Bearson , S. , and Foster , J.W. Cyclic-AMP-receptor-protein and TyrR are required for acid-pH induction of hyaB in Salmonella typhimurium ."
2575,2576,2153.txt,1,1,1,Felis catus;Felis catus,cat;cat,Felis catus,"Moreover , Q92am induction of H-NS derepressed the ssrAB-cat ssrAB-cat 240 fusions in the hilD mutant to levels similar to those .
"
2576,2577,2153.txt,2,2,1,Felis catus,cat,Felis catus,"Moreover , Q92am induction of H-NS derepressed the ssrAB-cat 336 240 fusions in the hilD mutant to levels similar to those .
"
2577,2578,2153.txt,3,3,1,Felis catus,cat,Felis catus,"Moreover , Q92am induction of H-NS did not affect the expression of ssrAB-cat 69 .
"
2578,2579,2153.txt,4,4,1,Felis catus,cat,Felis catus,"Moreover , Q92am induction of H-NS did not affect the expression of ssrAB-cat 119 ."
2579,2580,1260.txt,1,1,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2580,2581,1260.txt,2,2,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2581,2582,1260.txt,3,3,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2582,2583,1260.txt,4,4,1,Salmonella,Salmonella,Salmonella,"Lim S , Yun J , Yoon H , Park C , Kim B , Jeon B , Kim D , Ryu S : Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2583,2584,1260.txt,5,5,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2584,2585,1260.txt,6,6,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2585,2586,1260.txt,7,7,1,Salmonella,Salmonella,Salmonella,"Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2586,2587,1260.txt,8,8,1,Salmonella,Salmonella,Salmonella,"Lim , S. , J. Yun , H. Yoon , C. Park , B. Kim et al. , 2007 Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
"
2587,2588,1260.txt,9,9,1,Salmonella,Salmonella,Salmonella,Mlc regulation of Salmonella pathogenicity island I gene expression via hilE repression .
2588,2589,1512.txt,1,3,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. Typhimurium;Typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"for CadC activity Inactivation of STM4538 prevents proteolytic cleavage of CadC To assess the potential role of STM4538 in the proteolytic activation of CadC , we performed an immunoblot analysis of total protein extracts from the S. Typhimurium wild-type .
"
2589,2590,2033.txt,1,1,1,Salmonella,Salmonella,Salmonella,"the 9 bp deletion in the promoter region of mutant ramA in fluoroquinolone-resistant Salmonella _ suggesting that it might be the 51 binding site for a local repressor of RamA
"
2590,2591,2033.txt,2,2,1,Salmonella;Salmonella,Salmonella;Salmonella,Salmonella,"RamR is a local repressor of ramA , and RamA are involved in AcrABmediated multidrug resistance in Salmonella .28 In this study , we investigated the roles of Salmonella multidrug efflux pumps in resistance to tigecycline and other glycylcyclines ."
2591,2592,521.txt,1,1,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"-- 10 , 2002 FimZ Binds the Salmonella typhimurium fimA Promoter Region and May"
2592,2593,509.txt,1,1,1,unidentified,unknown,unidentified,"In the presence of an unknown environmental condition , HilD may activate invF expression .
"
2593,2594,509.txt,2,4,1,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,S. typhimurium;typhimurium,Salmonella enterica subsp. enterica serovar Typhimurium,"We have evidence that HilD modestly activates invF expression independently of its effects on hilA , even in WT S. typhimurium .
"
2594,2595,509.txt,3,12,2,unidentified plasmid;Prairie vole hantavirus;Prairie vole hantavirus,plasmid;pVV;pVV,Prairie vole hantavirus;unidentified plasmid,"These results also explain why our invF-lacZ reporter plasmid , pVV448 , was not activated by HilD to the same extent as the chromosomal invF-lacZ fusion because pVV448 does not contain the HilD-and HilC-dependent +1 of invF .
"
2595,2596,509.txt,4,14,1,Escherichia coli,E. coli,Escherichia coli,"In order to address whether additional S. typhimuriumspecific genes are required for HilD to activate invF , we examined both pSA7 reporters in E. coli TOP-10 cells .
"
2596,2597,509.txt,5,15,2,Prairie vole hantavirus;Escherichia coli,pVV;E. coli,Escherichia coli;Prairie vole hantavirus,"In order to address whether additional S. typhimuriumspecific genes are required for HilD to activate invF , we examined both pVV448 reporters in E. coli TOP-10 cells .
"
2597,2598,509.txt,6,16,1,Escherichia coli,E. coli,Escherichia coli,"We found that HilD induce invF expression from pSA7 in E. coli , comparable to that .
"
2598,2599,509.txt,7,17,1,Prairie vole hantavirus,pVV,Prairie vole hantavirus,"We also found that HilD , activates invF expression from pVV448 , also comparable to that .
"
2599,2600,1923.txt,1,1,1,Salmonella enterica subsp. enterica serovar Typhimurium,typhimu,Salmonella enterica subsp. enterica serovar Typhimurium,"Wild-type S. typhimu-rium containing CysB-regulated promoter reporters for sbp , cysP , and cysJ were grown in M9-minimal-medium with sulfate as the sole sulfur source with and without 50 mM methyl viologen to cause mild oxidative-stress .
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2600,2601,1923.txt,2,2,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,"Stoichiometry of binding of CysB to cysP promoter regions of Salmonella typhimurium .
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2601,2602,1923.txt,3,3,2,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium,Salmonella;Salmonella typhimurium;typhimurium,Salmonella;Salmonella enterica subsp. enterica serovar Typhimurium,Stoichiometry of binding of CysB to cysP promoter regions of Salmonella typhimurium .
2602,2603,1704.txt,1,1,1,Hypostomus robinii,tetA,Hypostomus robinii,"The rtsA gene was under the control of a tetA promoter , hilD was deleted , and HilE was overexpressed as indicated .
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2603,2604,1704.txt,2,2,1,Hypostomus robinii,tetA,Hypostomus robinii,"The rtsA gene was under the control of a tetA promoter , hilD was left unaltered , and HilE was overexpressed as indicated ."
2604,2605,290.txt,1,6,1,Salmonella,Salmonella,Salmonella,"In Salmonella , SirA also directly activates the horizontally acquired regulatory genes hilA .
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2605,2606,284.txt,1,1,2,Salmonella enterica subsp. enterica serovar Typhimurium;Salmonella enterica subsp. enterica serovar Typhimurium;Chryseobacterium gallinarum,S. typhimurium;typhimurium;strain ( 100,Chryseobacterium gallinarum;Salmonella enterica subsp. enterica serovar Typhimurium,"The overlay was prepared in a Falcon tube in conditions of sterility by mixing sterile LB-medium ( 20 mL ) containing agar ( 0.12 g ) at ca. 42 °C , with 20 mg/mL solution of X-gal ( 333 μL ) , 50 μg/mL solution of kanamycin ( 20 μL ) and 1 × 10 CFU/mL 8 of the S. typhimurium strain ( 100 μL ) that harbours reporter transcriptional lacZ-fusions to either the archetypal PhoP-activated gene virK ( 14028 virK : : lacZ ) or to a gene activated by the OmpR -- EnvZ two-compo-nent system , tppB ( 14028 tppB : : MudI ) ."
2606,2607,2219.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"However , in the presence of H2O2 , transcription of fur is also activated by OxyR in E. coli , resulting in repression of target mRNAs for iron-uptake proteins ."
2607,2608,1076.txt,1,3,1,Escherichia coli,E. coli,Escherichia coli,"More recently , it was shown that leuO expression in E. coli can be activated by the RcsB regulators .
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2608,2609,2231.txt,1,1,1,Escherichia coli,E. coli,Escherichia coli,"Cells were grown d also on LB ag at , a growth-condition used to study the regulation of crl expression by Fur in E. coli W3 ."