Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

Go to a project
Toggle navigation Toggle navigation pinning
Kevin Meza Landeros
a46c79b7 1 parent 6629d354

Update README.md

Inline Side-by-side
Showing 1 changed file with 3 additions and 3 deletions
...@@ -19,7 +19,7 @@ Thats why, our hypothesis is that a predictive model can determine the GCs of th ...@@ -19,7 +19,7 @@ Thats why, our hypothesis is that a predictive model can determine the GCs of th
19 19
20 20
21 ## Metodolgy 21 ## Metodolgy
22 - 1. GEO files download 22 + 1. __*GEO files download*__
23 GEO files from all Entero bacteria were downloaded to a server and ordered in 4 directorie (all of them with lots of _GSE00000000_ folders): 23 GEO files from all Entero bacteria were downloaded to a server and ordered in 4 directorie (all of them with lots of _GSE00000000_ folders):
24 - Binding_exp 24 - Binding_exp
25 - Binding_HT 25 - Binding_HT
...@@ -27,12 +27,12 @@ Thats why, our hypothesis is that a predictive model can determine the GCs of th ...@@ -27,12 +27,12 @@ Thats why, our hypothesis is that a predictive model can determine the GCs of th
27 - Function_HT 27 - Function_HT
28 Each of the _GSE00000000_ folders contains a compresed file (GSE00000_family.soft.gz) that must be extracted. 28 Each of the _GSE00000000_ folders contains a compresed file (GSE00000_family.soft.gz) that must be extracted.
29 29
30 - 2.- Obtaining SOFT files and its transformation to an XML format 30 + 2. __*Obtaining SOFT files and its transformation to an XML format*__
31 An script goes trhough every _GSE00000000_ folder an unzips _"GSE00000_family.soft.gz"_ files, in order to obain _"GSE00000_family.soft"_ files. 31 An script goes trhough every _GSE00000000_ folder an unzips _"GSE00000_family.soft.gz"_ files, in order to obain _"GSE00000_family.soft"_ files.
32 These last are all saved in another directory, keeping the structure of the 4 father directories. 32 These last are all saved in another directory, keeping the structure of the 4 father directories.
33 Then another script transforms SOFT files into XML files. 33 Then another script transforms SOFT files into XML files.
34 34
35 - 3. Tagging the GC within the XML files 35 + 3. __*Tagging the GC within the XML files*__
36 36
37 ## Prerequisites 37 ## Prerequisites
38 ### Programming languages 38 ### Programming languages
......