Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

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Carlos-Francisco Méndez-Cruz
2a84cade 1 parent 2a7e3639

Conditions tagged per XML file - csv format

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Showing 23 changed files with 4055 additions and 0 deletions
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
3 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
4 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
3 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
4 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
5 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
6 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
7 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
8 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
9 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
10 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
11 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
12 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
13 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
14 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
15 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
16 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
17 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
18 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
19 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
3 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
4 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
5 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
6 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
7 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
8 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
9 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
10 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
11 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
12 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
13 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
14 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
15 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
16 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
17 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
18 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
19 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
20 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
21 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
27 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
28 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
29 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
30 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
3 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
4 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
5 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
6 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
7 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
8 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
9 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
10 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
11 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
12 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
13 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
14 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
15 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
16 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
17 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
18 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
19 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
20 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
21 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
27 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
28 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
29 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
30 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
33 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
34 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
35 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
3 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
4 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
5 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
6 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
7 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
8 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
9 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
10 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
11 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
12 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
13 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
14 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
15 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
16 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
17 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
18 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
19 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
20 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
21 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
27 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
28 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
29 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
30 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
33 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
34 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
35 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
36 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
38 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
40 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
41 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
42 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
43 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
44 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
45 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
46 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
47 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
48 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
49 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
50 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
51 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
52 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
53 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
54 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
55 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
56 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
57 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
58 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
59 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
60 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
3 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
4 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
5 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
6 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
7 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
8 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
9 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
10 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
11 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
12 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
13 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
14 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
15 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
16 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
17 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
18 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
19 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
20 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
21 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
22 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
23 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
24 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
25 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
26 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
27 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
28 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
29 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
30 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
31 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
32 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
33 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
34 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
35 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
36 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
38 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
40 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
41 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
42 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
43 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
44 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
45 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
46 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
47 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
48 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
49 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
50 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
51 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
52 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
53 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
54 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
55 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
56 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
57 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
58 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
59 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
60 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
61 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
62 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
63 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
64 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
3 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
4 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
5 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
6 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
7 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
8 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
9 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
10 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
11 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
12 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
13 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
14 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
15 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
16 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
17 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
18 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
19 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
20 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
21 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
22 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
23 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
24 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
25 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
26 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
27 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
28 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
29 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
30 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
31 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
32 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
33 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
34 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
35 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
36 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
37 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
38 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
39 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
40 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
41 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
42 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
43 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
44 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
45 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
46 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
47 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
48 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
49 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
50 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
51 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
52 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
53 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
54 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
55 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
56 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
57 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
58 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
59 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
60 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
61 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
62 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
63 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
64 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
65 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
66 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
67 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
68 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
69 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
70 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
71 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
72 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
73 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
74 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
75 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
76 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
77 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
78 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
79 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
80 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
81 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
82 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
83 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
84 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
85 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
86 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
87 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
88 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
89 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
90 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
91 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
92 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
93 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
94 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
95 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
96 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
97 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
98 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
99 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
100 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
101 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
102 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
103 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
104 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
105 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
106 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
107 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
108 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
109 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
110 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
111 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
112 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
3 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
4 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
5 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
6 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
7 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
8 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
9 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
10 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
11 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
12 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
13 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
14 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
15 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
16 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
17 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
18 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
19 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
20 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
21 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
22 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
23 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
24 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
25 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
26 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
27 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
28 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
29 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
30 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
31 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
32 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
33 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
34 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
35 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
36 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
37 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
38 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
39 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
40 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
41 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
42 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
43 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
44 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
45 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
46 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
47 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
48 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
49 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
50 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
51 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
52 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
53 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
54 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
55 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
56 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
57 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
58 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
59 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
60 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
61 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
62 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
63 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
64 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
65 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
66 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
67 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
68 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
69 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
70 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
71 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
72 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
73 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
74 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
75 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
76 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
77 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
78 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
79 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
80 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
81 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
82 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
83 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
84 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
85 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
86 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
87 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
88 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
89 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
90 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
91 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
92 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
93 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
94 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
95 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
96 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
97 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
98 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
99 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
100 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
101 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
102 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
103 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
104 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
105 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
106 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
107 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
108 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
109 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
110 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
111 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
112 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
113 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
114 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
115 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
116 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
117 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
118 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
119 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
120 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
121 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
122 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
123 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
124 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
125 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
126 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
127 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
128 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
3 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
4 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
5 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
6 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
7 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
8 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
9 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
10 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
11 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
12 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
13 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
14 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
15 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
16 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
17 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
18 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
19 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
20 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
21 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
22 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
23 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
24 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
25 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
26 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
27 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
28 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
29 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
30 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
31 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
32 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
33 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
34 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
35 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
36 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
37 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
38 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
39 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
40 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
41 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
42 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
43 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
44 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
45 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
46 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
47 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
48 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
49 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
50 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
51 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
52 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
53 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
54 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
55 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
56 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
57 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
58 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
59 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
60 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
61 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
62 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
63 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
64 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
65 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
66 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
67 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
68 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
69 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
70 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
71 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
72 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
73 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
74 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
75 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
76 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
77 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
78 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
79 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
80 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
81 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
82 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
83 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
84 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
85 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
86 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
87 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
88 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
89 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
90 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
91 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
92 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
93 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
94 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
95 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
96 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
97 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
98 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
99 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
100 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
101 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
102 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
103 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
104 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
105 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
106 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
107 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
108 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
109 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
110 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
111 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
112 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
113 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
114 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
115 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
116 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
117 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
118 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
119 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
120 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
121 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
122 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
123 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
124 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
125 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
126 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
127 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
128 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
129 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
130 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
131 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
132 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
133 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
134 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
135 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
136 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
137 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
138 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
139 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
140 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
141 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
142 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
143 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
144 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
145 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
146 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
147 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
148 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
149 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
150 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
151 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
152 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
153 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
154 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
155 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
156 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
157 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
158 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
159 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
160 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
161 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
162 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
163 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
164 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
165 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
166 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
167 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
168 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
169 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
170 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
171 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
172 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
173 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
174 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
175 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
176 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
177 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
178 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
179 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
180 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
181 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
182 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
15 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
16 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
17 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
18 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
19 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
20 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
21 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
27 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
28 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
29 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
30 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
33 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
34 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
35 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
36 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
37 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
38 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
39 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
40 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
41 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
42 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
43 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
44 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
45 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
46 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
49 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
50 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
51 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
52 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
53 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
54 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
55 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
56 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
57 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
58 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
59 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
60 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
61 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
62 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
63 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
64 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
65 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
66 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
67 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
68 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
69 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
70 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
71 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
72 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
73 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
74 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
75 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
76 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
77 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
78 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
79 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
80 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
81 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
82 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
83 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
84 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
85 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
86 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
87 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
88 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
89 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
90 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
100 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
101 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
102 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
103 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
104 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
105 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
106 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
107 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
108 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
109 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
110 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
111 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
112 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
113 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
114 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
115 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
116 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
117 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
118 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
119 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
120 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
121 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
122 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
123 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
124 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
125 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
126 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
127 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
128 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
129 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
130 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
131 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
132 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
133 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
134 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
135 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
136 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
137 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
138 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
139 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
140 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
141 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
142 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
143 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
144 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
145 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
146 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
147 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
148 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
149 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
150 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
151 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
152 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
153 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
154 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
155 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
156 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
157 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
158 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
159 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
160 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
161 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
162 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
163 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
164 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
165 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
166 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
167 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
168 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
169 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
170 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
171 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
172 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
173 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
174 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
175 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
176 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
177 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
178 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
179 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
180 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
181 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
182 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
183 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
184 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
185 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
186 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
187 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
188 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
189 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
190 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
191 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
192 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
193 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
194 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
15 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
16 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
17 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
18 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
19 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
20 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
21 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
27 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
28 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
29 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
30 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
33 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
34 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
35 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
36 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
37 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
38 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
39 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
40 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
41 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
42 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
43 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
44 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
45 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
46 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
49 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
50 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
51 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
52 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
53 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
54 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
55 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
56 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
57 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
58 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
59 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
60 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
61 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
62 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
63 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
64 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
65 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
66 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
67 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
68 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
69 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
70 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
71 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
72 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
73 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
74 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
75 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
76 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
77 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
78 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
79 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
80 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
81 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
82 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
83 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
84 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
85 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
86 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
87 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
88 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
89 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
90 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
100 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
101 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
102 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
103 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
104 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
105 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
106 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
107 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
108 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
109 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
110 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
111 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
112 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
113 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
114 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
115 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
116 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
117 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
118 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
119 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
120 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
121 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
122 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
123 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
124 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
125 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
126 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
127 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
128 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
129 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
130 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
131 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
132 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
133 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
134 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
135 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
136 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
137 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
138 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
139 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
140 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
141 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
142 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
143 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
144 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
145 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
146 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
147 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
148 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
149 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
150 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
151 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
152 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
153 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
154 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
155 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
156 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
157 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
158 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
159 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
160 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
161 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
162 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
163 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
164 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
165 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
166 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
167 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
168 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
169 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
170 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
171 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
172 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
173 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
174 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
175 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
176 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
177 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
178 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
179 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
180 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
181 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
182 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
183 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
184 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
185 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
186 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
187 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
188 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
189 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
190 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
191 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
192 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
193 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
194 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
195 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
196 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
15 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
16 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
17 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
18 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
19 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
20 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
21 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
27 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
28 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
29 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
30 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
33 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
34 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
35 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
36 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
37 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
38 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
39 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
40 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
41 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
42 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
43 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
44 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
45 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
46 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
49 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
50 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
51 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
52 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
53 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
54 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
55 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
56 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
57 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
58 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
59 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
60 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
61 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
62 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
63 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
64 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
65 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
66 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
67 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
68 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
69 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
70 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
71 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
72 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
73 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
74 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
75 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
76 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
77 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
78 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
79 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
80 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
81 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
82 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
83 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
84 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
85 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
86 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
87 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
88 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
89 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
90 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
112 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
113 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
114 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
115 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
116 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
117 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
118 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
119 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
120 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
121 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
122 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
123 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
124 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
125 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
126 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
127 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
128 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
129 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
130 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
131 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
132 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
133 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
134 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
135 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
136 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
137 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
138 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
139 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
140 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
141 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
142 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
143 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
144 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
145 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
146 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
147 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
148 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
149 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
150 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
151 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
152 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
153 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
154 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
155 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
156 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
157 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
158 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
159 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
160 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
161 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
162 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
163 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
164 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
165 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
166 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
167 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
168 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
169 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
170 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
171 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
172 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
173 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
174 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
175 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
176 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
177 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
178 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
179 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
180 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
181 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
182 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
183 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
184 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
185 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
186 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
187 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
188 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
189 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
190 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
191 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
192 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
193 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
194 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
195 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
196 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
197 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
198 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
199 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
200 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
201 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
202 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
203 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
204 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
205 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
206 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
207 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
208 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
15 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
16 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
17 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
18 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
19 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
20 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
21 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
22 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
23 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
27 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
28 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
29 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
30 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
31 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
32 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
33 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
34 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
35 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
36 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
37 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
38 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
39 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
40 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
41 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
42 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
43 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
44 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
45 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
46 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
49 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
50 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
51 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
52 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
53 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
54 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
55 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
56 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
57 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
58 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
59 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
60 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
61 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
62 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
63 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
64 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
65 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
66 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
67 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
68 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
69 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
70 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
71 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
72 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
73 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
74 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
75 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
76 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
77 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
78 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
79 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
80 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
81 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
82 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
83 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
84 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
85 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
86 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
87 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
88 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
89 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
90 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
112 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
124 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
125 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
126 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
127 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
128 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
129 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
130 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
131 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
132 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
133 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
134 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
135 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
136 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
137 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
138 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
139 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
140 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
141 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
142 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
143 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
144 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
145 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
146 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
147 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
148 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
149 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
150 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
151 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
152 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
153 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
154 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
155 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
156 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
157 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
158 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
159 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
160 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
161 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
162 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
163 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
164 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
165 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
166 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
167 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
168 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
169 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
170 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
171 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
172 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
173 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
174 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
175 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
176 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
177 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
178 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
179 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
180 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
181 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
182 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
183 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
184 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
185 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
186 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
187 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
188 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
189 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
190 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
191 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
192 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
193 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
194 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
195 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
196 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
197 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
198 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
199 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
200 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
201 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
202 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
203 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
204 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
205 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
206 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
207 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
208 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
209 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
210 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
211 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
212 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
213 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
214 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
215 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
216 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
217 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
218 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
219 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
220 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
15 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
16 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
17 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
18 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
19 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
20 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
21 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
22 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
23 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
24 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
25 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
26 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
27 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
28 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
29 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
30 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
31 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
32 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
33 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
34 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
35 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
36 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
37 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
38 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
39 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
40 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
41 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
42 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
43 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
44 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
45 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
46 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
49 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
50 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
51 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
52 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
53 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
54 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
55 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
56 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
57 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
58 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
59 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
60 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
61 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
62 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
63 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
64 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
65 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
66 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
67 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
68 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
69 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
70 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
71 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
72 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
73 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
74 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
75 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
76 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
77 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
78 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
79 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
80 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
81 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
82 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
83 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
84 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
85 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
86 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
87 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
88 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
89 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
90 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
112 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
130 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
131 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
132 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
133 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
134 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
135 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
136 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
137 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
138 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
139 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
140 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
141 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
142 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
143 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
144 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
145 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
146 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
147 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
148 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
149 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
150 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
151 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
152 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
153 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
154 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
155 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
156 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
157 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
158 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
159 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
160 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
161 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
162 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
163 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
164 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
165 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
166 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
167 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
168 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
169 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
170 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
171 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
172 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
173 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
174 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
175 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
176 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
177 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
178 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
179 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
180 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
181 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
182 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
183 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
184 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
185 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
186 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
187 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
188 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
189 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
190 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
191 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
192 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
193 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
194 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
195 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
196 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
197 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
198 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
199 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
200 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
201 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
202 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
203 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
204 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
205 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
206 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
207 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
208 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
209 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
210 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
211 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
212 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
213 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
214 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
215 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
216 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
217 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
218 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
219 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
220 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
221 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
222 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
223 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
224 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
225 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
226 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
15 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
16 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
17 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
18 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
19 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
20 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
21 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
22 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
23 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
24 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
25 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
26 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
27 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
28 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
29 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
30 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
31 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
32 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
33 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
34 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
35 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
36 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
37 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
38 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
39 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
40 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
41 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
42 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
43 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
44 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
45 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
46 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
49 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
50 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
51 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
52 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
53 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
54 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
55 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
56 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
57 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
58 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
59 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
60 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
61 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
62 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
63 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
64 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
65 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
66 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
67 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
68 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
69 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
70 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
71 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
72 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
73 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
74 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
75 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
76 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
77 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
78 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
79 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
80 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
81 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
82 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
83 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
84 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
85 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
86 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
87 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
88 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
89 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
90 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
112 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
130 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
131 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
132 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
133 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
134 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
135 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
136 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
137 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
138 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
139 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
140 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
141 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
142 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
143 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
144 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
145 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
146 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
147 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
148 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
149 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
150 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
151 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
152 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
153 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
154 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
155 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
156 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
157 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
158 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
159 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
160 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
161 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
162 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
163 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
164 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
165 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
166 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
167 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
168 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
169 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
170 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
171 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
172 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
173 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
174 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
175 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
176 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
177 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
178 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
179 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
180 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
181 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
182 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
183 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
184 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
185 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
186 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
187 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
188 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
189 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
190 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
191 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
192 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
193 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
194 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
195 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
196 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
197 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
198 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
199 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
200 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
201 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
202 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
203 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
204 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
205 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
206 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
207 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
208 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
209 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
210 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
211 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
212 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
213 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
214 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
215 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
216 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
217 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
218 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
219 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
220 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
221 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
222 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
223 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
224 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
225 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
226 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
227 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
228 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
229 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
230 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
231 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
232 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
233 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
234 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
15 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
16 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
17 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
18 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
19 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
20 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
21 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
22 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
23 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
24 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
25 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
26 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
27 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
28 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
29 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
30 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
31 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
32 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
33 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
34 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
35 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
36 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
37 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
38 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
39 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
40 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
41 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
42 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
43 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
44 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
45 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
46 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
49 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
50 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
51 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
52 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
53 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
54 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
55 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
56 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
57 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
58 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
59 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
60 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
61 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
62 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
63 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
64 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
65 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
66 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
67 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
68 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
69 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
70 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
71 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
72 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
73 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
74 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
75 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
76 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
77 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
78 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
79 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
80 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
81 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
82 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
83 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
84 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
85 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
86 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
87 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
88 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
89 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
90 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
91 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
92 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
93 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
94 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
95 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
96 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
97 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
98 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
112 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
130 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
131 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
132 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
133 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
134 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
135 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
136 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
137 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
138 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
139 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
140 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
141 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
142 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
143 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
144 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
145 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
146 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
147 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
148 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
149 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
150 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
151 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
152 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
153 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
154 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
155 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
156 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
157 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
158 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
159 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
160 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
161 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
162 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
163 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
164 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
165 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
166 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
167 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
168 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
169 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
170 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
171 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
172 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
173 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
174 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
175 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
176 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
177 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
178 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
179 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
180 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
181 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
182 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
183 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
184 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
185 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
186 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
187 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
188 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
189 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
190 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
191 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
192 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
193 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
194 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
195 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
196 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
197 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
198 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
199 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
200 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
201 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
202 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
203 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
204 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
205 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
206 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
207 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
208 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
209 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
210 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
211 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
212 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
213 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
214 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
215 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
216 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
217 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
218 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
219 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
220 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
221 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
222 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
223 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
224 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
225 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
226 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
227 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
228 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
229 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
230 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
231 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
232 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
233 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
234 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
235 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
236 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
237 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
238 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
239 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
240 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
241 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
242 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
15 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
16 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
17 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
18 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
19 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
20 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
21 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
22 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
23 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
24 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
25 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
26 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
27 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
28 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
29 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
30 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
31 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
32 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
33 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
34 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
35 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
36 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
37 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
38 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
39 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
40 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
41 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
42 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
43 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
44 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
45 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
46 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
47 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
48 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
49 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
50 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
51 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
52 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
53 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
54 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
55 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
56 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
57 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
58 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
59 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
60 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
61 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
62 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
63 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
64 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
65 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
66 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
67 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
68 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
69 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
70 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
71 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
72 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
73 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
74 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
75 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
76 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
77 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
78 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
79 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
80 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
81 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
82 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
83 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
84 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
85 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
86 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
87 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
88 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
89 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
90 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
91 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
92 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
93 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
94 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
95 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
96 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
97 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
98 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
99 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
100 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
101 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
102 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
103 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
104 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
105 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
106 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
107 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
108 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
109 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
110 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
111 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
112 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
130 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
131 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
132 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
133 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
134 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
135 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
136 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
137 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
138 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
139 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
140 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
141 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
142 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
143 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
144 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
145 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
146 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
147 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
148 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
149 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
150 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
151 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
152 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
153 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
154 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
155 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
156 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
157 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
158 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
159 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
160 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
161 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
162 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
163 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
164 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
165 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
166 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
167 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
168 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
169 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
170 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
171 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
172 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
173 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
174 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
175 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
176 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
177 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
178 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
179 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
180 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
181 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
182 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
183 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
184 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
185 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
186 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
187 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
188 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
189 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
190 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
191 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
192 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
193 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
194 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
195 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
196 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
197 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
198 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
199 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
200 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
201 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
202 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
203 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
204 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
205 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
206 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
207 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
208 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
209 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
210 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
211 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
212 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
213 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
214 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
215 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
216 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
217 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
218 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
219 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
220 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
221 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
222 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
223 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
224 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
225 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
226 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
227 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
228 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
229 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
230 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
231 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
232 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
233 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
234 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
235 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
236 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
237 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
238 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
239 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
240 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
241 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
242 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
243 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
244 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
245 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
246 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
247 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
248 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
249 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
250 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
3 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
4 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
5 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
6 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
7 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
8 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
9 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
10 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
11 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
12 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
13 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
14 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
15 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
16 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
17 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
18 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
19 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
20 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
21 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
22 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
23 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
24 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
25 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
26 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
27 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
28 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
29 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
30 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
31 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
32 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
33 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
34 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
35 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
36 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
37 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
38 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
39 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
40 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
41 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
42 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
43 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
44 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
45 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
46 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
47 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
48 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
49 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
50 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
51 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
52 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
53 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
54 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
55 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
56 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
57 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
58 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
59 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
60 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
61 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
62 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
63 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
64 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
65 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
66 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
67 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
68 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
69 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
70 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
71 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
72 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
73 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
74 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
75 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
76 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
77 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
78 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
79 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
80 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
81 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
82 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
83 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
84 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
85 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
90 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
91 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
92 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
93 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
94 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
95 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
96 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
97 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
98 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
99 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
100 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
101 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
102 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
103 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
104 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
105 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
106 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
107 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
108 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
109 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
110 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
111 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
112 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
113 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
130 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
131 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
132 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
133 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
134 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
135 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
136 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
137 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
138 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
139 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
140 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
141 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
142 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
143 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
144 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
145 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
146 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
147 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
160 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
161 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
162 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
163 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
164 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
165 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
166 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
167 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
168 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
169 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
170 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
171 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
172 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
173 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
174 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
175 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
176 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
177 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
178 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
179 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
180 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
181 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
182 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
183 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
184 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
185 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
186 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
187 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
188 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
189 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
190 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
191 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
192 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
193 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
194 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
195 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
196 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
197 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
198 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
199 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
200 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
201 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
202 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
203 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
204 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
205 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
206 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
207 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
208 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
209 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
210 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
211 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
212 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
213 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
214 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
215 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
216 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
217 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
218 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
219 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
220 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
221 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
222 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
223 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
224 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
225 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
226 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
227 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
228 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
229 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
230 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
231 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
232 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
233 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
234 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
235 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
236 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
237 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
238 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
239 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
240 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
241 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
242 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
243 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
244 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
245 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
246 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
247 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
248 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
249 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
250 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
251 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
252 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
253 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
254 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
255 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
256 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
257 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
258 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
259 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
260 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
261 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
262 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
263 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
264 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
3 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
4 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
5 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
6 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
7 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
8 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
9 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
10 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
11 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
12 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
13 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
14 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
15 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
16 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
17 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
18 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
19 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
20 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
21 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
22 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
23 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
24 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
25 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
26 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
27 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
28 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
29 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
30 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
31 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
32 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
33 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
34 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
35 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
36 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
37 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
38 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
39 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
40 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
41 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
42 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
43 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
44 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
45 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
46 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
47 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
48 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
49 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
50 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
51 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
52 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
53 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
54 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
55 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
56 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
57 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
58 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
59 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
60 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
61 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
62 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
63 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
64 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
65 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
66 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
67 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
68 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
69 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
70 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
71 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
72 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
73 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
74 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
75 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
76 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
77 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
78 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
79 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
80 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
81 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
82 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
83 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
84 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
85 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
90 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
91 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
92 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
93 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
94 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
95 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
96 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
97 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
98 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
99 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
100 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
101 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
102 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
103 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
104 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
105 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
106 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
107 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
108 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
109 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
110 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
111 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
112 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
113 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
114 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
115 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
116 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
117 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
118 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
119 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
120 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
121 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
122 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
123 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
124 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
125 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
126 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
127 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
128 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
129 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
130 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
131 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
132 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
133 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
134 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
135 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
136 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
137 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
138 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
139 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
140 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
141 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
142 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
143 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
144 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
145 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
146 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
147 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
160 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
161 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
162 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
163 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
164 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
165 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
166 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
167 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
168 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
169 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
170 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
171 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
172 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
173 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
174 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
175 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
176 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
177 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
178 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
179 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
180 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
181 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
182 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
183 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
184 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
185 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
186 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
187 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
188 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
189 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
190 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
191 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
192 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
193 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
194 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
195 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
196 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
197 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
198 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
199 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
200 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
201 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
202 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
203 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
204 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
205 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
206 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
207 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
208 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
209 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
210 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
211 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
212 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
213 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
214 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
215 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
216 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
217 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
218 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
219 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
220 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
221 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
222 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
223 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
224 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
225 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
226 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
227 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
228 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
229 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
230 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
231 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
232 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
233 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
234 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
235 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
236 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
237 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
238 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
239 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
240 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
241 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
242 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
243 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
244 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
245 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
246 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
247 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
248 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
249 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
250 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
251 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
252 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
253 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
254 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
255 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
256 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
257 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
258 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
259 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
260 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
261 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
262 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
263 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
264 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
265 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
15 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
16 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
17 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
18 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
19 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
20 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
21 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
22 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
23 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
24 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
25 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
26 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
27 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
28 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
29 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
30 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
31 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
32 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
33 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
34 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
35 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
36 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
38 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
40 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
41 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
42 +"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
43 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
44 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
45 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
46 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
47 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
48 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
49 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
50 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
51 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
52 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
53 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
54 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
55 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
56 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
57 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
58 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
59 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
60 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
61 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
62 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
63 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
64 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
65 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
66 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
67 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
68 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
69 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
70 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
71 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
72 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
73 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
74 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
75 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
76 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
77 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
78 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
79 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
80 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
81 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
82 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
83 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
84 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
85 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
90 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
91 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
92 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
93 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
94 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
95 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
96 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
97 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
98 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
99 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
100 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
101 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
102 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
103 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
104 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
105 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
106 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
107 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
108 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
109 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
110 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
111 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
112 +"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
113 +"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
114 +"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
115 +"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
116 +"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
117 +"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
118 +"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
119 +"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
120 +"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
121 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
122 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
123 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
124 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
125 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
126 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
127 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
128 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
129 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
130 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
131 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
132 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
133 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
134 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
135 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
136 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
137 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
138 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
139 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
140 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
141 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
142 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
143 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
144 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
145 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
146 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
147 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
160 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
161 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
162 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
163 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
164 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
165 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
166 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
167 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
168 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
169 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
170 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
171 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
172 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
173 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
174 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
175 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
176 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
177 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
178 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
179 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
180 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
181 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
182 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
183 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
184 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
185 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
186 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
187 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
188 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
189 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
190 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
191 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
192 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
193 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
194 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
195 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
196 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
197 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
198 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
199 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
200 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
201 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
202 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
203 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
204 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
205 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
206 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
207 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
208 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
209 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
210 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
211 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
212 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
213 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
214 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
215 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
216 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
217 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
218 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
219 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
220 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
221 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
222 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
223 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
224 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
225 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
226 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
227 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
228 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
229 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
230 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
231 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
232 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
233 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
234 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
235 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
236 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
237 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
238 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
239 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
240 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
241 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
242 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
243 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
244 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
245 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
246 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
247 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
248 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
249 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
250 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
251 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
252 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
253 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
254 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
255 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
256 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
257 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
258 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
259 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
260 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
261 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
262 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
263 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
264 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
265 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
266 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
267 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
268 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
269 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
270 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
271 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
272 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
273 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
274 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
15 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
16 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
17 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
18 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
19 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
20 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
21 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
22 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
23 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
24 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
25 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
26 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
27 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
28 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
29 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
30 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
31 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
32 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
33 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
34 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
35 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
36 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
38 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
40 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
41 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
42 +"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
43 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
44 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
45 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
46 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
47 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
48 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
49 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
50 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
51 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
52 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
53 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
54 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
55 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
56 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
57 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
58 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
59 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
60 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
61 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
62 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
63 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
64 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
65 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
66 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
67 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
68 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
69 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
70 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
71 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
72 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
73 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
74 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
75 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
76 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
77 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
78 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
79 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
80 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
81 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
82 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
83 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
84 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
85 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
90 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
91 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
92 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
93 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
94 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
95 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
96 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
97 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
98 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
99 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
100 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
101 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
102 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
103 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
104 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
105 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
106 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
107 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
108 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
109 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
110 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
111 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
112 +"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
113 +"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
114 +"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
115 +"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
116 +"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
117 +"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
118 +"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
119 +"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
120 +"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
121 +"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
122 +"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
123 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
124 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
125 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
126 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
127 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
128 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
129 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
130 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
131 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
132 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
133 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
134 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
135 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
136 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
137 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
138 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
139 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
140 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
141 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
142 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
143 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
144 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
145 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
146 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
147 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
160 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
161 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
162 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
163 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
164 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
165 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
166 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
167 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
168 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
169 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
170 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
171 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
172 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
173 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
174 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
175 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
176 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
177 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
178 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
179 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
180 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
181 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
182 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
183 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
184 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
185 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
186 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
187 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
188 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
189 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
190 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
191 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
192 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
193 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
194 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
195 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
196 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
197 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
198 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
199 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
200 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
201 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
202 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
203 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
204 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
205 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
206 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
207 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
208 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
209 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
210 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
211 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
212 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
213 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
214 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
215 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
216 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
217 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
218 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
219 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
220 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
221 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
222 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
223 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
224 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
225 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
226 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
227 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
228 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
229 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
230 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
231 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
232 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
233 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
234 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
235 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
236 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
237 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
238 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
239 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
240 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
241 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
242 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
243 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
244 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
245 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
246 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
247 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
248 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
249 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
250 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
251 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
252 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
253 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
254 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
255 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
256 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
257 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
258 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
259 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
260 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
261 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
262 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
263 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
264 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
265 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
266 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
267 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
268 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
269 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
270 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
271 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
272 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
273 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
274 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
275 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
276 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
15 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
16 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
17 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
18 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
19 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
20 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
21 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
22 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
23 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
24 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
25 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
26 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
27 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
28 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
29 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
30 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
31 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
32 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
33 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
34 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
35 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
36 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
38 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
40 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
41 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
42 +"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
43 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
44 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
45 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
46 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
47 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
48 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
49 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
50 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
51 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
52 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
53 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
54 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
55 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
56 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
57 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
58 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
59 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
60 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
61 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
62 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
63 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
64 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
65 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
66 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
67 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
68 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
69 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
70 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
71 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
72 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
73 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
74 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
75 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
76 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
77 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
78 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
79 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
80 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
81 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
82 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
83 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
84 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
85 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
90 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
91 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
92 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
93 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
94 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
95 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
96 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
97 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
98 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
99 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
100 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
101 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
102 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
103 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
104 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
105 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
106 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
107 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
108 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
109 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
110 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
111 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
112 +"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
113 +"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
114 +"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
115 +"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
116 +"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
117 +"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
118 +"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
119 +"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
120 +"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
121 +"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
122 +"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
123 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
124 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
125 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
126 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
127 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
128 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
129 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
130 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
131 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
132 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
133 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
134 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
135 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
136 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
137 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
138 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
139 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
140 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
141 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
142 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
143 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
144 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
145 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
146 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
147 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
160 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
161 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
162 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
163 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
164 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
165 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
166 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
167 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
168 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
169 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
170 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
171 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
172 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
173 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
174 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
175 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
176 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
177 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
178 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
179 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
180 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
181 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
182 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
183 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
184 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
185 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
186 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
187 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
188 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
189 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
190 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
191 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
192 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
193 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
194 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
195 +"GSE88980","GSM2356687","WT NaCl 1","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
196 +"GSE88980","GSM2356688","WT NaCl 2","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
197 +"GSE88980","GSM2356689","ΔompR NaCl 1","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
198 +"GSE88980","GSM2356690","ΔompR NaCl 2","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
199 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
200 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
201 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
202 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
203 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
204 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
205 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
206 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
207 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
208 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
209 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
210 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
211 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
212 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
213 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
214 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
215 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
216 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
217 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
218 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
219 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
220 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
221 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
222 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
223 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
224 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
225 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
226 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
227 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
228 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
229 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
230 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
231 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
232 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
233 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
234 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
235 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
236 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
237 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
238 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
239 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
240 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
241 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
242 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
243 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
244 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
245 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
246 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
247 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
248 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
249 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
250 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
251 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
252 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
253 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
254 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
255 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
256 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
257 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
258 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
259 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
260 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
261 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
262 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
263 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
264 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
265 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
266 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
267 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
268 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
269 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
270 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
271 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
272 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
273 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
274 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
275 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
276 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
277 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
278 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
279 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
280 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
1 +"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
2 +"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
3 +"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
4 +"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
5 +"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
6 +"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
7 +"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
8 +"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
9 +"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
10 +"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
11 +"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
12 +"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
13 +"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
14 +"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
15 +"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
16 +"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
17 +"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
18 +"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
19 +"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
20 +"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
21 +"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
22 +"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
23 +"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
24 +"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
25 +"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
26 +"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
27 +"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
28 +"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
29 +"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
30 +"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
31 +"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
32 +"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
33 +"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
34 +"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
35 +"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
36 +"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
37 +"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
38 +"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
39 +"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
40 +"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
41 +"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
42 +"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
43 +"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
44 +"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
45 +"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
46 +"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
47 +"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
48 +"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
49 +"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
50 +"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
51 +"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
52 +"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
53 +"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
54 +"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
55 +"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
56 +"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
57 +"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
58 +"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
59 +"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
60 +"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
61 +"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
62 +"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
63 +"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
64 +"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
65 +"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
66 +"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
67 +"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
68 +"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
69 +"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
70 +"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
71 +"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
72 +"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
73 +"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
74 +"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
75 +"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
76 +"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
77 +"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
78 +"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
79 +"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
80 +"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
81 +"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
82 +"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
83 +"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
84 +"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
85 +"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
86 +"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
87 +"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
88 +"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
89 +"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
90 +"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
91 +"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
92 +"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
93 +"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
94 +"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
95 +"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
96 +"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
97 +"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
98 +"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
99 +"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
100 +"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
101 +"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
102 +"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
103 +"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
104 +"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
105 +"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
106 +"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
107 +"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
108 +"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
109 +"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
110 +"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
111 +"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
112 +"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
113 +"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
114 +"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
115 +"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
116 +"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
117 +"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
118 +"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
119 +"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
120 +"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
121 +"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
122 +"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
123 +"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
124 +"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
125 +"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
126 +"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
127 +"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
128 +"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
129 +"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
130 +"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
131 +"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
132 +"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
133 +"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
134 +"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
135 +"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
136 +"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
137 +"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
138 +"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
139 +"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
140 +"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
141 +"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
142 +"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
143 +"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
144 +"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
145 +"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
146 +"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
147 +"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
148 +"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
149 +"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
150 +"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
151 +"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
152 +"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
153 +"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
154 +"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
155 +"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
156 +"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
157 +"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
158 +"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
159 +"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
160 +"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
161 +"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
162 +"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
163 +"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
164 +"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
165 +"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
166 +"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
167 +"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
168 +"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
169 +"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
170 +"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
171 +"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
172 +"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
173 +"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
174 +"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
175 +"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
176 +"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
177 +"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
178 +"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
179 +"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
180 +"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
181 +"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
182 +"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
183 +"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
184 +"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
185 +"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
186 +"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
187 +"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
188 +"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
189 +"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
190 +"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
191 +"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
192 +"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
193 +"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
194 +"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
195 +"GSE88980","GSM2356687","WT NaCl 1","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
196 +"GSE88980","GSM2356688","WT NaCl 2","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
197 +"GSE88980","GSM2356689","ΔompR NaCl 1","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
198 +"GSE88980","GSM2356690","ΔompR NaCl 2","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
199 +"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
200 +"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
201 +"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
202 +"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
203 +"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
204 +"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
205 +"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
206 +"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
207 +"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
208 +"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
209 +"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
210 +"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
211 +"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
212 +"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
213 +"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
214 +"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
215 +"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
216 +"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
217 +"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
218 +"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
219 +"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
220 +"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
221 +"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
222 +"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
223 +"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
224 +"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
225 +"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
226 +"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
227 +"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
228 +"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
229 +"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
230 +"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
231 +"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
232 +"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
233 +"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
234 +"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
235 +"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
236 +"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
237 +"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
238 +"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
239 +"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
240 +"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
241 +"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
242 +"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
243 +"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
244 +"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
245 +"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
246 +"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
247 +"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
248 +"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
249 +"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
250 +"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
251 +"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
252 +"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
253 +"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
254 +"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
255 +"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
256 +"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
257 +"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
258 +"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
259 +"GSE93506","GSM2453482","CsiR_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
260 +"GSE93506","GSM2453483","Nac_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
261 +"GSE93506","GSM2453484","NtrC_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
262 +"GSE93506","GSM2453485","OmpR_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
263 +"GSE93506","GSM2453486","CsiR_RNASeq","","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
264 +"GSE93506","GSM2453487","Nac_RNASeq","","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
265 +"GSE93506","GSM2667742","WT_ChIPSeq_1","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
266 +"GSE93506","GSM2667743","WT_ChIPSeq_2","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
267 +"GSE93506","GSM2667744","pT7_ChIPSeq_1","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
268 +"GSE93506","GSM2667745","pT7_ChIPSeq_2","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
269 +"GSE93506","GSM2667746","WT_RNASeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
270 +"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
271 +"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
272 +"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
273 +"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
274 +"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
275 +"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
276 +"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
277 +"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
278 +"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
279 +"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
280 +"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
281 +"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
282 +"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
283 +"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
284 +"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
285 +"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
286 +"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
287 +"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
288 +"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
289 +"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
290 +"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
291 +"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""