Carlos-Francisco Méndez-Cruz / automatic-extraction-growth-conditions

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Carlos-Francisco Méndez-Cruz
2a84cade 1 parent 2a7e3639

Conditions tagged per XML file - csv format

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Showing 23 changed files with 4055 additions and 0 deletions
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE88980","GSM2356687","WT NaCl 1","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356688","WT NaCl 2","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356689","ΔompR NaCl 1","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356690","ΔompR NaCl 2","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"Serie","Sample","Name","Anti","Orgn","Strain","Substrain","Gtype","Gversion","Med","Technique","Supp","Air","Temp","pH","Press","OD","Phase","Rate","Vess","Agit"
"GSE54899","GSM1326335","Fur with Fe 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326336","Fur with Fe 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326337","Fur with DPD 1 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326338","Fur with DPD 2 (ChIP-exo)","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","fur-8myc","NC_000913, ASM584v2, ChIP-Seq","M9 minimal media","ChIP-exo","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326339","RpoB with Fe 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326340","RpoB with Fe 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326341","RpoB with Fe and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326342","RpoB with Fe and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","Fe and rifampicin, 0.2% glucose, 0.1mM of FeCl2, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326343","RpoB with DPD 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326344","RpoB with DPD 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD, 0.2% glucose, 0.2mM of DPD, 2h","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326345","RpoB with DPD and rifampicin 1 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE54899","GSM1326346","RpoB with DPD and rifampicin 2 (ChIP-exo)","anti-RpoB","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","ChIP-exo, ChIP-Seq","DPD and rifampicin, 0.2% glucose, 0.2mM of DPD, 2h, rifampicin dissolved in methanol, 150 mg/mL, 20 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41186","GSM1010199","FNR - Anaerobic - A","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010200","FNR - Anaerobic - B","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010201","FNR - Anaerobic - C","Pre-cleared FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010202","ß - Anaerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010203","ß - Anaerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010204","ß - Aerobic - A","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010205","ß - Aerobic - B","RNA Polymerase ß monoclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010206","HNS - Anaerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010207","HNS - Aerobic A","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Aerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1010208","IHF - Anaerobic A","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010209","∆fnr - Anaeroibc","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","∆fnr, PK4854","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010210","Ptac::fnr - A - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010211","Ptac::fnr - B - 4 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","4 µM IPTG, 4 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010212","Ptac::fnr - A - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010213","Ptac::fnr - B - 8 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","8 µM IPTG, 8 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010214","Ptac::fnr - A - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010215","Ptac::fnr - B - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010216","Ptac::fnr - C - 16 µM IPTG","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","PK8263","","","","16 µM IPTG, 16 µM IPTG and 300 µL Cm20","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010217","FNR - Anaerobic - Affinity Purified - A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1010218","FNR - Anaerobic - Affinity Purified - B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655star","WT","","","","","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054383","FNR - ∆hns∆stpA A","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1054384","FNR - ∆hns∆stpA B","Affinity Purified FNR antibody","Escherichia coli","K-12","MG1655","∆hns/∆stpA","","","","","anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143890","HNS - Anaerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE41186","GSM1143891","HNS - Aerobic B","Pre-cleared H-NS polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, aerobically (25% O2, 70% N2 and 5% CO2)","","","","OD600 of 0.35","mid-log phase","","",""
"GSE41186","GSM1143892","IHF - Anaerobic B","Pre-cleared IHF polyclonal antibody","Escherichia coli","K-12","MG1655","WT","","","","","anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of 0.3","mid-log phase","","",""
"GSE11230","GSM282644","NsrR_Flagtag_rep2","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM282645","NsrR_Flagtag_rep3","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE11230","GSM283059","NsrR_Flagtag_rep1","","Escherichia coli","","","NsrR, Flag-tag","","L broth","","glucose, nitrate","anaerobically","","","","","","","",""
"GSE74931","GSM1937963","∆fur Anaerobic [IP vs nput]","affinity purified anti-Fur antibody","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","","","","","","mid-log","","",""
"GSE65641","GSM1602341","Cra glucose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602342","Cra glucose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602343","Cra fructose 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602344","Cra fructose 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% fructose","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602345","Cra acetate 1","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM1602346","Cra acetate 2","anti-myc","Escherichia coli, K-12 MG1655","","","cra-8myc-tagged","ASM584v2","M9 minimal media","ChIP-Seq","0.2% acetate","aerobically","37°C","","","","mid-log","","",""
"GSE65641","GSM2829281","RpoB WT 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829282","RpoB WT 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","Wildtype","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829283","RpoB ∆cra 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829284","RpoB ∆cra 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","cra Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829285","RpoB ∆crp 1","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE65641","GSM2829286","RpoB ∆crp 2","anti-rpoB","Escherichia coli, K-12 MG1655","","","crp Knock-out strain","ASM584v2","","ChIP-Seq","acetate","","","","","","","","",""
"GSE60546","GSM1482120","","","Escherichia coli","K-12","MG1655","","NC_000913","M9 medium","ChIP-Seq","2 g/L glucose, presence or absence of 1 g/L arginine","","37°C","","","OD600 ≈ 0.5","","","",""
"GSE60546","GSM1482121","","","Escherichia coli","K-12","MG1655","","NC_000913","","ChIP-Seq","absence of 1 g/L arginine","","","","","","","","",""
"GSE55366","GSM1334764","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334765","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334766","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334767","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334768","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334769","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334770","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334771","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334772","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334773","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334774","","","","","","","","","","","","","","","","","","",""
"GSE55366","GSM1334775","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326335","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326336","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326337","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326338","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326339","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326340","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326341","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326342","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326343","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326344","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326345","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326346","","","","","","","","","","","","","","","","","","",""
"GSE54901","GSM1326347","WT with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326348","WT with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326349","WT with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326350","WT with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","WT","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326351","Δfur with Fe 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326352","Δfur with Fe 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","Fe, 0.2% glucose, 0.1mM of FeCl2","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326353","Δfur with DPD 1 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE54901","GSM1326354","Δfur with DPD 2 (RNA-seq)","","Escherichia coli str. K-12 substr. MG1655","","","Δfur","NC_000913, ASM584v2","M9 minimal media","RNA-Seq","DPD, 0.2% glucose, 0.2mM of DPD","aerobically","37°C","","","","mid-log phase","","",""
"GSE66441","GSM1622463","ChIP-exo GadE pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622464","ChIP-exo GadE pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadE-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622465","ChIP-exo GadW pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622466","ChIP-exo GadW pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadW-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622467","ChIP-exo GadX pH5.5 1","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1622468","ChIP-exo GadX pH5.5 2","anti-myc","Escherichia coli str. K-12 substr. MG1655","","","gadX-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633277","ChIP-exo RpoS pH5.5 1","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66441","GSM1633278","ChIP-exo RpoS pH5.5 2","anti-RpoS","Escherichia coli str. K-12 substr. MG1655","","","WT","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE19053","GSM471482","RNAP old rep1","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471483","RNAP old rep2","RNA polymerase subunit β","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471484","SeqA old rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471485","SeqA old rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471486","SeqA new rep1","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471487","SeqA new rep2","SeqA","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471488","SeqA old deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471489","SeqA new deltaSeqA","SeqA","Escherichia coli str. K-12 substr. MG1655","","","ΔseqA","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471490","Crosslink","","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","LB","","0.2% glucose","","37 °C","","","OD600 of about 0.15","","","",""
"GSE19053","GSM471491","σ32 43°C rep1, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471492","σ32 43°C rep2, σ32 ChIP DNA, heat","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471493","σ32 30°C rep1, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471494","σ32 30°C rep2, σ32 ChIP DNA, control","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM471495","σ32 30°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C (see heat sample), 30 °C","","","OD600 of about 0.3","","","flask",""
"GSE19053","GSM476145","σ32 43°C short RNase","σ32","Escherichia coli str. K-12 substr. MG1655","","","wildtype","","","","","","43 °C, 30 °C (see control sample)","","","OD600 of about 0.3","","","flask",""
"GSE74932","GSM1937964","Fur IP ChIP-Seq Aerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937965","Fur IP ChIP-Seq Aerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937966","Fur IP ChIP-Seq Aerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937967","Fur IP ChIP-Seq Anaerobic A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937968","Fur IP ChIP-Seq Anaerobic B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937969","Fur IP ChIP-Seq Anaerobic C","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","Wild-type","U00096.2","MOPS minimal glucose media","ChIP-Seq","10 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937970","Fur IP ChIP-Seq Anaerobic, Iron Deficient A","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}lacZ, {delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937971","Fur IP ChIP-Seq Anaerobic, Iron Deficient B","anti-Fur polyclonal antibody","Escherichia coli str. K-12 substr. MG1655","","","{delta}tonB, {delta}feoA, {delta}zupT K12","U00096.2","MOPS minimal glucose media","ChIP-Seq","1 µM FeSO4, Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE74932","GSM1937972","Input ChIP-Seq","none","Escherichia coli str. K-12 substr. MG1655","","","Combined input","U00096.2","","ChIP-Seq","Sodium phosphate (1/100 vol. of 1M, pH 7.6; 10 mM final)","","","","","OD600 of ~0.3-0.35","mid-log, mid-log phase","","",""
"GSE88979","GSM2356685","OmpR NaCl 1","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE88979","GSM2356686","OmpR NaCl 2","anti-myc","Escherichia coli","K-12","MG1655","ompR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","","","","","","mid-log pahse","","",""
"GSE66481","GSM1623160","WT pH5.5 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623161","WT pH5.5 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623162","ΔgadE pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623163","ΔgadE pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadE","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623164","ΔgadW pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623165","ΔgadW pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadW","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623166","ΔgadX pH5.5 1","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE66481","GSM1623167","ΔgadX pH5.5 2","","Escherichia coli, K-12 MG1655","","","delta-gadX","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose","aerobically","37°C","pH 5.5","","OD600 = 0.3","mid-log phase","","","250 rpm"
"GSE4321","GSM98717","EC18n177 RpoH 0 min Time course 1, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98718","EC18n178 RpoH 2.5 min Time course 1, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98719","EC18n179 RpoH 5 min Time course 1, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98720","EC18n180 RpoH 10 min Time course 1, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98721","EC18n181 RpoH 20 min Time course 1, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98722","EC18n167 RpoH 0 min Time course 2, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98723","EC18n168 RpoH 2.5 min Time course 2, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98724","EC18n169 RpoH 5 min Time course 2, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98725","EC18n170 RpoH 10 min Time course 2, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98726","EC18n171 RpoH 20 min Time course 2, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98727","EC18n182 RpoH 0 min Time course 3, Wild type control (0 min), RpoH induced (0 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98728","EC18n183 RpoH 2.5 min Time course 3, Wild type control (2.5 min), RpoH induced (2.5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98729","EC18n184 RpoH 5 min Time course 3, Wild type control (5 min), RpoH induced (5 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98730","EC18n185 RpoH 10 min Time course 3, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98731","EC18n186 RpoH 20 min Time course 3, Wild type control (20 min), RpoH induced (20 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE4321","GSM98732","EC18n122 RpoH 10 min Time course 4, Wild type control (10 min), RpoH induced (10 min)","","Escherichia coli","","MG1655","PhtpG::lacZ delta lacX74/ptrc99A (control vector), PhtpG::lacZ delta lacX74/pTG2 (vector carrying inducible Ptrc::rpoH)","","M9 minimal complete media","","1 mM IPTG","aerobically","30 degrees C","","","OD450 = 0.3","","","","gyratory water bath shaking at 240 rpm"
"GSE41195","GSM1010199","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010200","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010201","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010202","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010203","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010204","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010205","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010206","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010207","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010208","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010209","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010210","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010211","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010212","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010213","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010214","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010215","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010216","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010217","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010218","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010219","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010220","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010221","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010222","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010223","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010224","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010240","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010241","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010242","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010243","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010244","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010245","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010246","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1010247","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054383","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1054384","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072326","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072327","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1072328","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124977","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124978","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124979","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1124980","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126445","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1126446","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143890","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143891","","","","","","","","","","","","","","","","","","",""
"GSE41195","GSM1143892","","","","","","","","","","","","","","","","","","",""
"GSE88980","GSM2356687","WT NaCl 1","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356688","WT NaCl 2","","Escherichia coli","K-12","MG1655","WT","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356689","ΔompR NaCl 1","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE88980","GSM2356690","ΔompR NaCl 2","","Escherichia coli","K-12","MG1655","ompR deletion mutant","NC_000913","M9 minimal media","RNA-Seq","0.2% glucose, 0.3 M of NaCl, 30 min","aerobically","37°C","","","","mid-log phase","","",""
"GSE41190","GSM1010244","Ecoli_wild-type_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010245","Ecoli_wild-type_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","Wild-Type","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010246","Ecoli_dFNR_rep1_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE41190","GSM1010247","Ecoli_dFNR_rep2_anaerobic","","Escherichia coli str. K-12 substr. MG1655star","K-12","","dFNR (PK4854), dFNR","U00096.2","MOPS","RNA-Seq","0.2% glucose","anaerobic, anerobically (95% N2, 5% CO2)","37°C","","","O.D.600nm 0.3","mid-log phase","","",""
"GSE65642","GSM1602347","WT glucose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602348","WT glucose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602349","WT fructose 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602350","WT fructose 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602351","WT acetate 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602352","WT acetate 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602353","Δcra glucose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602354","Δcra glucose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","glucose, 0.2% glucose","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602355","Δcra fructose 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602356","Δcra fructose 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","fructose, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602357","Δcra acetate 1","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE65642","GSM1602358","Δcra acetate 2","","Escherichia coli, K-12 MG1655","","","delta_cra","NC_000913","M9 minimal media","RNA-Seq","acetate, 0.2%","aerobically","37°C","","","","mid-log phase","","",""
"GSE26589","GSM654485","PurR_Adenine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654486","PurR_Adenine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","Adenine, 100ug/L adenine","","","","","","","","",""
"GSE26589","GSM654487","PurR_glucose_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26589","GSM654488","PurR_glucose_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","PurR-8myc","","M9 minimal medium","","glucose","","","","","","","","",""
"GSE26054","GSM639826","ArgR_Arginine_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639827","ArgR_Arginine_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","1g/L arginine","","","","","","","","",""
"GSE26054","GSM639828","ArgR_NH4Cl_1, Escherichia coli str. K-12 substr. MG1655","9E10 Myc tag","","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639829","ArgR_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","ArgR-8myc","","glucose (2 g/L) minimal W2 medium","","2g/L glutamine","","","","","","","","",""
"GSE26054","GSM639830","Lrp_Leu_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639831","Lrp_Leu_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639832","Lrp_Leu_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639833","Lrp_NH4Cl_1","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639834","Lrp_NH4Cl_2","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639835","Lrp_NH4Cl_3","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","Lrp-8myc","","glucose (2 g/L) minimal M9 medium","","10 mM leucine","","","","","","","","",""
"GSE26054","GSM639836","TrpR_Trp","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE26054","GSM639837","TrpR_glucose","9E10 Myc tag","Escherichia coli str. K-12 substr. MG1655","","","TrpR-8myc","","glucose (2 g/L) minimal M9 medium","","20 mg/L tryptophan","","","","","","","","",""
"GSE65711","GSM1603386","WT PQ 1","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603387","WT PQ 2","","Escherichia coli, K-12 MG1655","","","WT","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603388","ΔoxyR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603389","ΔoxyR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-oxyR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603390","ΔsoxR PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603391","ΔsoxR PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxR","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603392","ΔsoxS PQ 1","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE65711","GSM1603393","ΔsoxS PQ 2","","Escherichia coli, K-12 MG1655","","","delta-soxS","NC_000913","M9 minimal media","RNA-Seq","250 uM of paraquat, 20 min, 0.2% glucose","aerobically","37°C","","","","mid-log pahse","","",""
"GSE74930","GSM1937949","Wild-type Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937950","Wild-type Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937951","Wild-type Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937952","Wild-type Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","wild type","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937953","∆fur Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937954","∆fur Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937955","∆fur Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937956","∆fur Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937957","∆fur ∆ryhB Aerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937958","∆fur ∆ryhB Aerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937959","∆fur ∆ryhB Anaerobic A","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937960","∆fur ∆ryhB Anaerobic B","","Escherichia coli str. K-12 substr. MG1655","","","lacking the transcription factor Fur and the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937961","∆ryhB Aerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Aerobic, aerobically (70% N2, 25% O2, and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE74930","GSM1937962","∆ryhB Anaerobic","","Escherichia coli str. K-12 substr. MG1655","","","lacking the small RNA RyhB","","MOPS minimal glucose media","","10 µM FeSO4","Anaerobic, anaerobically (95% N2 and 5% CO2)","","","","OD600 of ~0.3-0.35","mid-log phase","","",""
"GSE65710","GSM1603380","OxyR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603381","OxyR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","oxyR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603382","SoxR PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603383","SoxR PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxR-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603384","SoxS PQ 1","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE65710","GSM1603385","SoxS PQ 2","anti-myc","Escherichia coli, K-12 MG1655","","","soxS-8myc","ASM584v2","M9 minimal media","ChIP-Seq","250 uM of paraquat, 20 min, 0.2% glucose","","","","","","mid-log phase","","",""
"GSE93506","GSM2453482","CsiR_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2453483","Nac_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2453484","NtrC_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2453485","OmpR_ChIPSeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2453486","CsiR_RNASeq","","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2453487","Nac_RNASeq","","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2667742","WT_ChIPSeq_1","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2667743","WT_ChIPSeq_2","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2667744","pT7_ChIPSeq_1","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2667745","pT7_ChIPSeq_2","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","ChIP-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE93506","GSM2667746","WT_RNASeq","anti-FLAG mAb","Escherichia coli K-12, MG1655","","","","U00096.2","LB media","RNA-Seq","1mM IPTG, 2 hours","","37 °C","","","","","","",""
"GSE55199","GSM1331409","LB 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331410","LB 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331411","LB 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331412","LB 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331413","LB 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331414","LB 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331415","LB 2.0 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331416","LB 2.0 B1 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331417","LB 2.0 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331418","LB 2.0 B1 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331419","LB 2.0 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331420","LB 2.0 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331421","LB 2.0 B2 TEX neg L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331422","LB 2.0 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331423","LB 2.0 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331424","LB 2.0 B2 TEX pos L2 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","LB","RNA-Seq","","","","","","OD600 of 2.0","stationary","","",""
"GSE55199","GSM1331425","M63 0.4 B1 TEX neg L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331426","M63 0.4 B1 TEX pos L1 GA","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331427","M63 0.4 B2 TEX neg L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331428","M63 0.4 B2 TEX neg L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331429","M63 0.4 B2 TEX pos L1 HS1","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""
"GSE55199","GSM1331430","M63 0.4 B2 TEX pos L1 HS2","","Escherichia coli str. K-12 substr. MG1655","","","wild type","NC_000913.2","M63, M63 minimal glucose","RNA-Seq","","","","","","OD600 of ~0.4","exponential","","",""