SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Basecalls performed using CASAVA version 1.8.2 PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to CP009273.1 whole genome using bowtie2 PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Quantification of gene expression and analysis of gene differential expression were performed using Fragment Per Kilo bases per Million reads (FPKM) value based rsem software version 1.2.4 and edgeR version 3.4.2 (Bioconductor), respectively PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Genome_build: CP009273.1 PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Supplementary_files_format_and_content: Excel file include FPKM values of different genes for each sample PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	Total RNAs were isolated using TRIzol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit. Illumina TruSeq RNA Sample Prep Kit (Cat#FC-122-1001) was used for the construction of sequencing libraries. PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	RNA libraries were prepared for sequencing using standard Illumina protocols. PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Bacteria cells PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	strain: BW25113 PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	product: Butanol PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Bacteria cells PGCGROWTHCONDITIONS
SRR5340104	GSE96551	GSM2535444	GPL14548	PMID_28363967	MT_48h_rep1	Genome-wide analysis of the differentially expressed genes between a butanol-producing wild type strain and a pykA mutant during fermentation	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	contact_name	Chunhua,,Zhao PGCGROWTHCONDITIONS