SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	RNA-Seq of E. coli were done using blind and fit-only parameter in DE-Seq pakage PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence using FASTX-Toolkit  version 0.0.13 and Perl version 5.8.8 PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	first strand cDNA was performed by the use of SuperScriptII and the second strand cDNA synthesis was done before end-pair and dA-tailing PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Reads longer than 25 nt and ≤ 2 N (ambiguous nucleotides) were preserved. PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Using blind and fit-only parameter in DE-Seq pakage, expressions of genes in all samples were changed to count per gene, using RNA-Seq protocol on Illumina HiSeq2500 platform PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Genome_build: UCSC mm10 PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Supplementary_files_format_and_content: tab-delimited text files include normalized FPKM values and raw fragment counts for each Sample PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	Total RNAs were extracted from the bacterial isolates using TRIzol PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	Following [linebreak]TruSeq RNA Sample Preparation Guide[linebreak]. PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	Strains were harvested in MH broth at log phase PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Human PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	treatment_protocol	No treatment PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	strain: E. coli ATCC 25922 PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	Strains were harvested in MH broth at log phase PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Human PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	treatment_protocol	No treatment PGCGROWTHCONDITIONS
SRR5262404	GSE94978	GSM2492643	GPL14548	PMID_28827616	ATCC2	Comparative Transcriptomic Profiling of Antimicrobial Resistant and Virulent   Escherichia coli of Poultry Origin	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	contact_name	Ganlin,,Xu PGCGROWTHCONDITIONS