SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	data_processing	alignment: STAR 2.4.0i PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	data_processing	gene counting: HTSeq-Count 0.6.0 PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	data_processing	Genome_build: NC007779.1 (UCSC Archaeal Genome Browser) PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	data_processing	Supplementary_files_format_and_content: The file format is .xlsx. The file contains the raw gene counts of all samples. PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	extract_protocol	Samples were treated with RNAprotect (Qiagen, Hilden, Germany) and stored at -80°C until preparation. rRNA was removed using RiboZero rRNA Removal Kit (Illumina, San Diego, CA), and sequencing libraries were prepared with TruSeq™ RNA Sample Preparation Kitv2 (Illumina) PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	extract_protocol	RNA libraries were prepared for sequencing using standard Illumina protocols PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	growth_protocol	Cell were grown in 3-liter stirred tank bioreactor anaerobically. The growth medium contained Na2H2PO4 (1.1 g/l), K2HPO4 (2.5 g/l), (NH4)2SO4 (9.0 g/l), Glucose (15.0 g/l), CaCl2 (2.2 mg/l), MgSO4 (0.55 g/l), NaH2-Citrate (234 mg/l), FeCl3*6 H2O (25.0 mg/l), ZnSO4*7 H2O (0.18 mg/l), MnSO4*7 H2O (0.1 mg/l), CuSO4*5 H2O (0.16 mg/l), CoCl2*6 H2O (0.18 mg/l). PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	source_name	batch culture PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	treatment_protocol	Aeration was initiated at 1 l/min when the culture reached an OD (600nm) of 3. PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	characteristics	strain: K12 W3110 PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	characteristics	replicate: 1 PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	characteristics	time: 0.5 min PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	growth_protocol	Cell were grown in 3-liter stirred tank bioreactor anaerobically. The growth medium contained Na2H2PO4 (1.1 g/l), K2HPO4 (2.5 g/l), (NH4)2SO4 (9.0 g/l), Glucose (15.0 g/l), CaCl2 (2.2 mg/l), MgSO4 (0.55 g/l), NaH2-Citrate (234 mg/l), FeCl3*6 H2O (25.0 mg/l), ZnSO4*7 H2O (0.18 mg/l), MnSO4*7 H2O (0.1 mg/l), CuSO4*5 H2O (0.16 mg/l), CoCl2*6 H2O (0.18 mg/l). PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	source_name	batch culture PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	treatment_protocol	Aeration was initiated at 1 l/min when the culture reached an OD (600nm) of 3. PGCGROWTHCONDITIONS
SRR2135664	GSE71562	GSM1838497	GPL18133	PMID_27384956PMID_28264512PMID_32246034	batch culture rep1, 0.5 min	RNA-Seq of Escherichia coli after anaerobic-aerobic transition	GPL18133: Illumina HiSeq 2500 (Escherichia coli)	contact_name	Joachim,,von Wulffen PGCGROWTHCONDITIONS