GSE65244-GSM1590720-GPL14548-PMID_.tsv
4.08 KB
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) data_processing GATC software for read mapping on MG1655 PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) data_processing verified with in-house pipeline PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) data_processing Gene wise natural spline interpolation of temporal data from initial time points to a dataset of 10 minutes steps (see processed data files). Expression values at the time points of the raw data are not affected by the interpolation. PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) data_processing gene expression sum normalized to 1 at each time point PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) data_processing Supplementary_files_format_and_content: expression of genes in time, rows = genes, cols = time points PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) extract_protocol RNA extraction Kit PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) extract_protocol GATC PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) growth_protocol LB medium, 37°C, airated, constant pH 7.5 PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) organism Escherichia coli PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) source_name Escherichia coli CSH50 Δfis PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) library_strategy RNA-Seq PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) characteristics strain: CSH50 PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) characteristics genotype: delta-fis PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) characteristics time: 420 minutes PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) growth_protocol LB medium, 37°C, airated, constant pH 7.5 PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) organism Escherichia coli PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) source_name Escherichia coli CSH50 Δfis PGCGROWTHCONDITIONS
SRR1771422 GSE65244 GSM1590720 GPL14548 PMID_ Fis – 420 min Temporal gene expression in Escherichia coli GPL14548: Illumina HiSeq 2000 (Escherichia coli) contact_name Patrick,,Sobetzko PGCGROWTHCONDITIONS