GSE65244-GSM1590717-GPL14548-PMID_.tsv 4.06 KB
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	GATC software for read mapping on MG1655 PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	verified with in-house pipeline PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Gene wise natural spline interpolation of temporal data from initial time points to a dataset of 10 minutes steps (see processed data files). Expression values at the time points of the raw data are not affected by the interpolation. PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	gene expression sum normalized to 1 at each time point PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	data_processing	Supplementary_files_format_and_content: expression of genes in time, rows = genes, cols = time points PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	RNA extraction Kit PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	extract_protocol	GATC PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	LB medium, 37°C, airated, constant pH 7.5 PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Escherichia coli CSH50 Δfis PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	library_strategy	RNA-Seq PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	strain: CSH50 PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	genotype: delta-fis PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	characteristics	time: 60 minutes PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	growth_protocol	LB medium, 37°C, airated, constant pH 7.5 PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	organism	Escherichia coli PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	source_name	Escherichia coli CSH50 Δfis PGCGROWTHCONDITIONS
SRR1771419	GSE65244	GSM1590717	GPL14548	PMID_	Fis – 60 min	Temporal gene expression in Escherichia coli	GPL14548: Illumina HiSeq 2000 (Escherichia coli)	contact_name	Patrick,,Sobetzko PGCGROWTHCONDITIONS