report_S1_True_S2_True_v1.txt
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.27193776724339846, 'c2': 0.057295268767110843}
best CV score:0.8163630580002407
model size: 0.08M
Flat F1: 0.8109731224696033
precision recall f1-score support
OD 0.789 0.405 0.536 37
pH 1.000 1.000 1.000 12
Technique 1.000 0.909 0.952 22
Med 0.897 0.912 0.904 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.807 0.742 0.773 62
Anti 0.800 0.889 0.842 9
Strain 1.000 1.000 1.000 1
Gtype 0.896 0.811 0.851 106
Substrain 0.000 0.000 0.000 1
Supp 0.835 0.706 0.765 136
Gversion 0.000 0.000 0.000 0
avg / total 0.864 0.773 0.811 480
Top likely transitions:
OD -> OD 6.289427
Agit -> Agit 6.267353
Temp -> Temp 5.783774
Air -> Air 5.351944
Med -> Med 5.160137
Anti -> Anti 4.729843
Gversion -> Gversion 4.256435
Gtype -> Gtype 4.229740
Supp -> Supp 4.114596
Phase -> Phase 4.079539
Technique -> Technique 3.363448
O -> O 3.125273
pH -> pH 2.487113
O -> Supp 1.331978
Air -> O 1.197935
Substrain -> Gtype 0.867656
O -> Technique 0.848943
Gtype -> Supp 0.842999
O -> Gtype 0.806504
Med -> O 0.277505
OD -> Phase 0.274387
Technique -> Air 0.254899
Gtype -> Air 0.194030
O -> Anti 0.155845
Temp -> O 0.076714
O -> Temp 0.055684
O -> Gversion 0.011422
Phase -> Technique -0.000422
O -> Med -0.114582
Supp -> Technique -0.122463
Phase -> OD -0.142889
Supp -> O -0.146822
O -> Phase -0.168062
O -> OD -0.179767
OD -> Gtype -0.206495
Supp -> Gtype -0.284656
Gtype -> Med -0.297248
Gtype -> OD -0.310283
Technique -> OD -0.344965
OD -> Air -0.364197
Anti -> O -0.368065
Technique -> pH -0.470302
Gversion -> O -0.499305
Supp -> Med -0.541780
Gtype -> Anti -0.621750
OD -> O -0.828115
O -> Air -0.867377
Med -> Supp -0.872960
Gtype -> O -0.956730
Substrain -> O -1.072085
Top unlikely transitions:
Temp -> Temp 5.783774
Air -> Air 5.351944
Med -> Med 5.160137
Anti -> Anti 4.729843
Gversion -> Gversion 4.256435
Gtype -> Gtype 4.229740
Supp -> Supp 4.114596
Phase -> Phase 4.079539
Technique -> Technique 3.363448
O -> O 3.125273
pH -> pH 2.487113
O -> Supp 1.331978
Air -> O 1.197935
Substrain -> Gtype 0.867656
O -> Technique 0.848943
Gtype -> Supp 0.842999
O -> Gtype 0.806504
Med -> O 0.277505
OD -> Phase 0.274387
Technique -> Air 0.254899
Gtype -> Air 0.194030
O -> Anti 0.155845
Temp -> O 0.076714
O -> Temp 0.055684
O -> Gversion 0.011422
Phase -> Technique -0.000422
O -> Med -0.114582
Supp -> Technique -0.122463
Phase -> OD -0.142889
Supp -> O -0.146822
O -> Phase -0.168062
O -> OD -0.179767
OD -> Gtype -0.206495
Supp -> Gtype -0.284656
Gtype -> Med -0.297248
Gtype -> OD -0.310283
Technique -> OD -0.344965
OD -> Air -0.364197
Anti -> O -0.368065
Technique -> pH -0.470302
Gversion -> O -0.499305
Supp -> Med -0.541780
Gtype -> Anti -0.621750
OD -> O -0.828115
O -> Air -0.867377
Med -> Supp -0.872960
Gtype -> O -0.956730
Substrain -> O -1.072085
Agit -> O -1.092872
Technique -> O -1.136884
Top positive:
4.371447 Technique b'lemma[:2]:Ch'
3.412737 O b'lemma[:2]:re'
3.346233 Air b'lemma:anaerobic'
3.006455 O b'lemma:1'
3.006455 O b'lemma[:2]:1'
2.974851 Gtype b'lemma[:1]:\xce\xb4'
2.912775 Gtype b'lemma:arca8myc'
2.849140 Supp b'+1:lemma:\xc2\xb5m'
2.828513 Phase b'lemma:mid-log'
2.792393 O b'lemma:_'
2.792393 O b'lemma[:1]:_'
2.792393 O b'lemma[:2]:_'
2.775899 Gtype b'-1:lemma:\xe2\x88\x86'
2.625937 Air b'-1:lemma:ChIP-Seq'
2.548311 Phase b'lemma:stationary'
2.540916 Supp b'+1:lemma:1'
2.487761 Supp b'+1:lemma:2'
2.442931 Air b'lemma:aerobic'
2.440190 O b'lemma[:2]:ge'
2.435018 Gtype b'lemma[:2]:fl'
2.424212 O b'-1:lemma:tag'
2.408234 Supp b'lemma:Iron'
2.408234 Supp b'lemma[:2]:Ir'
2.348537 Technique b'lemma[:1]:C'
2.317292 O b'lemma:2'
2.317292 O b'lemma[:2]:2'
2.308110 OD b'lemma[:2]:od'
2.302326 Gtype b'lemma:type'
2.302326 Gtype b'lemma[:2]:ty'
2.269875 Supp b'lemma:nitrate'
2.269875 Supp b'lemma[:2]:ni'
2.232923 O b'-1:lemma:ChIP-exo'
2.212341 Air b'lemma[:2]:an'
2.211030 Air b'lemma[:2]:ae'
2.210563 Med b'+1:lemma:0.4'
2.190483 O b'lemma:3'
2.190483 O b'lemma[:2]:3'
2.182751 O b'+1:lemma:pq'
2.164071 Anti b'lemma[:2]:an'
2.150488 O b'lemma:rpob'
2.116867 Gtype b'lemma:flag-tag'
2.116867 Gtype b'-1:lemma:c-terminal'
2.113845 Technique b'lemma:chipseq'
2.106619 O b'+1:lemma:od600'
2.103057 Anti b'+1:lemma:antibody'
2.102593 O b'lemma:with'
2.082800 O b'+1:postag:RB'
2.080780 Supp b'lemma:pq'
2.080780 Supp b'lemma[:2]:pq'
2.074963 Technique b'lemma[:2]:rn'
2.067178 Gtype b'lemma[:2]:cr'
2.064575 Med b'lemma[:1]:L'
2.061976 Supp b'lemma:arginine'
2.026279 Supp b'-1:lemma:Cra'
2.019223 Supp b'lemma:fructose'
1.992770 Gversion b'lemma:nc'
1.992770 Gversion b'lemma[:2]:nc'
1.980198 O b'lemma:0.4'
1.979285 Gtype b'lemma[:2]:de'
1.970609 O b'isLower'
1.937619 Strain b'lemma:k-12'
1.937619 Strain b'lemma[:2]:k-'
1.931122 O b'-1:lemma:0.3-0.35'
1.881593 Supp b'-1:lemma:with'
1.875598 Gtype b'lemma:nsrr'
1.875598 Gtype b'lemma[:2]:ns'
1.852069 Technique b'lemma[:2]:ch'
1.836687 pH b'lemma:ph5'
1.836687 pH b'+1:lemma:.5'
1.832664 Gtype b'lemma[:2]:ar'
1.831556 Air b'lemma[:1]:A'
1.826833 Temp b'lemma[:1]:3'
1.823899 Substrain b'lemma:mg1655'
1.820738 Gversion b'-1:lemma:nc'
1.820497 O b'postag::'
1.820497 O b'postag[:1]::'
1.820497 O b'postag[:2]::'
1.813703 O b'-1:lemma:Aerobic'
1.796031 Gtype b'lemma[:1]:w'
1.792963 O b'postag:IN'
1.792963 O b'postag[:1]:I'
1.792963 O b'postag[:2]:IN'
1.783756 Gtype b'lemma:wt'
1.783756 Gtype b'lemma[:2]:wt'
1.779970 Gtype b'lemma[:1]:W'
1.766922 Air b'lemma:Aerobic'
1.766922 Air b'lemma[:2]:Ae'
1.762347 Strain b'lemma[:1]:k'
1.759570 Technique b'symb'
1.750706 Gversion b'lemma[:2]:00'
1.749953 Gtype b'-1:lemma:_'
1.737043 Substrain b'lemma[:2]:mg'
1.733603 O b'-1:lemma:anaerobic'
1.709162 Gversion b'lemma:chip-seq'
1.701695 Temp b'-1:lemma:sample'
1.688968 Gtype b'+1:lemma:with'
1.684459 O b'-1:lemma:lb'
1.661522 Supp b'-1:postag:CC'
1.650389 O b'lemma:b'
1.650389 O b'lemma[:2]:b'
1.646363 O b'-1:lemma:0.3'
1.639941 Gtype b'+1:lemma:type'
1.637375 Air b'-1:lemma:co2'
1.636378 Med b'lemma:lb'
1.636378 Med b'lemma[:2]:lb'
1.622025 Vess b'lemma[:2]:fl'
1.617013 O b'-1:lemma:glucose'
1.592815 Med b'isUpper'
1.589934 Supp b'lemma:rifampicin'
1.589786 O b'lemma:a'
1.589786 O b'lemma[:2]:a'
1.586603 O b'+1:lemma:nacl'
1.583003 Supp b'lemma[:1]:I'
1.580604 Supp b'lemma[:2]:gl'
1.576478 Supp b'lemma[:2]:ri'
1.566704 Vess b'lemma:flask'
1.566704 Vess b'-1:lemma:warm'
1.563672 O b'-1:lemma:l1'
1.557695 Med b'lemma:MOPS'
1.557695 Med b'lemma[:1]:M'
1.557695 Med b'lemma[:2]:MO'
1.555428 O b'+1:postag:NNP'
1.545733 Gtype b'hGreek'
1.540517 Supp b'+1:lemma:_'
1.532630 Strain b'+1:lemma:substr'
1.524978 Phase b'-1:lemma:mid-log'
1.523410 O b'lemma:Custom'
1.523410 O b'lemma[:2]:Cu'
1.506527 Supp b'lemma[:2]:0.'
1.493748 Med b'+1:lemma:2.0'
1.489084 Gtype b'-1:lemma:rpob'
1.468114 Technique b'lemma:ChIP-exo'
1.462941 Vess b'-1:postag:VBN'
1.460306 Supp b'-1:postag:CD'
1.447232 Gversion b'lemma:asm584v2'
1.442845 Gversion b'lemma[:2]:as'
1.436821 Supp b'lemma[:1]:n'
1.435640 Temp b'lemma:43'
1.435640 Temp b'lemma[:2]:43'
1.430453 Gtype b'lemma:fnr8myc'
1.423051 Temp b'-1:lemma:43'
1.422224 O b'+1:lemma:ph5'
1.419624 Supp b'lemma:acetate'
1.403936 Med b'lemma[:1]:m'
1.397641 O b'lemma:Cra'
1.397641 O b'lemma[:2]:Cr'
1.395977 Temp b'-1:lemma:\xcf\x8332'
1.392367 O b'lemma:.'
1.392367 O b'postag:.'
1.392367 O b'postag[:1]:.'
1.392367 O b'postag[:2]:.'
1.392367 O b'lemma[:2]:.'
1.391334 Gtype b'+1:lemma:flagtag'
1.377069 OD b'+1:lemma:stationary'
1.376467 Supp b'lemma[:1]:1'
1.373778 Gtype b'-1:postag:VBG'
1.369190 pH b'+1:postag:CD'
1.364150 Phase b'-1:lemma:until'
1.356359 Air b'+1:postag:IN'
1.353508 Air b'lemma[:1]:a'
1.350471 Supp b'lemma:no3'
1.347435 Med b'lemma:broth'
1.347435 Med b'-1:lemma:L'
1.347435 Med b'lemma[:2]:br'
1.340636 Gtype b'symb'
1.337653 Supp b'lemma[:1]:2'
1.337468 OD b'lemma[:1]:o'
1.332813 O b'+1:lemma:anti-fur'
1.329231 Gtype b'+1:lemma::'
1.323371 Temp b'+1:lemma:\xc2\xb0c'
1.316239 O b'-1:lemma:media'
1.308580 Anti b'-1:lemma::'
1.308448 Technique b'-1:lemma:input'
1.305697 Gtype b'lemma[:1]:f'
1.304733 O b'lemma[:1]:r'
1.298211 Gversion b'+1:lemma:000913'
1.282839 Supp b'lemma:methanol'
1.281363 Air b'-1:postag:CD'
1.280599 Supp b'lemma:Fe'
1.280599 Supp b'lemma[:2]:Fe'
1.280195 O b'lemma[:1]:C'
1.274450 O b'-1:lemma:type'
1.274241 Supp b'lemma:dpd'
1.274241 Supp b'lemma[:2]:dp'
1.264726 Phase b'lemma[:2]:st'
1.261615 Med b'+1:lemma:-lrb-'
1.258563 Phase b'lemma[:2]:mi'
1.256496 Supp b'lemma:of'
1.256496 Supp b'lemma[:2]:of'
1.254569 Substrain b'+1:lemma:phtpg'
1.254075 Technique b'-1:lemma:_'
1.245791 Med b'+1:postag:-LRB-'
1.240716 Technique b'lemma[:1]:c'
1.237704 Anti b'lemma:none'
1.235216 Supp b'lemma[:2]:ac'
1.234140 Gtype b'-1:lemma:nsrr'
1.233335 O b'lemma:\xcf\x8332'
1.233335 O b'lemma[:1]:\xcf\x83'
1.233335 O b'lemma[:2]:\xcf\x833'
1.229676 Air b'-1:lemma:-'
Top negative:
-0.051463 Temp b'postag:JJ'
-0.054116 Air b'postag[:1]:C'
-0.059372 Phase b'postag[:1]:J'
-0.059372 Phase b'postag[:2]:JJ'
-0.059941 Temp b'postag:NN'
-0.060299 Air b'lemma[:1]:n'
-0.060598 Temp b'isLower'
-0.062297 O b'+1:lemma:or'
-0.065185 Supp b'+1:postag:VBN'
-0.065466 Air b'lemma:and'
-0.066813 Gtype b'-1:postag:NN'
-0.068526 O b'lemma[:2]:ce'
-0.071041 O b'-1:postag:JJ'
-0.071759 OD b'lemma:-lrb-'
-0.074300 OD b'lemma[:1]:t'
-0.074669 Supp b'postag:CD'
-0.074669 Supp b'postag[:2]:CD'
-0.078783 O b'lemma[:2]:30'
-0.079591 OD b'postag:-LRB-'
-0.079591 OD b'postag[:2]:-L'
-0.079591 OD b'lemma[:2]:-l'
-0.080662 O b'lemma[:2]:an'
-0.083375 O b'-1:postag:-RRB-'
-0.083466 O b'lemma:150'
-0.083466 O b'+1:lemma:mg/ml'
-0.083466 O b'lemma[:2]:15'
-0.084358 O b'lemma:glucose'
-0.089803 Supp b'lemma[:1]:o'
-0.090889 Gtype b'lemma[:1]:r'
-0.094789 OD b'+1:postag:CD'
-0.096046 O b'lemma:co2'
-0.096854 Supp b'lemma:2'
-0.096854 Supp b'lemma[:2]:2'
-0.107550 OD b'+1:lemma:of'
-0.110054 OD b'postag:JJ'
-0.111139 O b'-1:lemma:rna'
-0.113070 Air b'postag:CC'
-0.113070 Air b'postag[:2]:CC'
-0.116092 OD b'postag[:1]:J'
-0.116092 OD b'postag[:2]:JJ'
-0.116551 O b'-1:lemma:\xe2\x88\x86'
-0.119208 O b'-1:lemma:of'
-0.120060 O b'+1:lemma:arginine'
-0.120674 pH b'isLower'
-0.122477 O b'+1:lemma:300'
-0.123572 Phase b'postag:JJ'
-0.126294 O b'-1:lemma:iptg'
-0.129027 Gtype b'-1:lemma:,'
-0.129027 Gtype b'-1:postag:,'
-0.130686 Med b'postag[:1]:C'
-0.131309 Supp b'+1:lemma:rifampicin'
-0.137449 O b'-1:lemma:o2'
-0.138824 O b'-1:lemma:ml'
-0.142350 O b'lemma[:2]:20'
-0.147695 Air b'-1:lemma:anaerobically'
-0.147731 pH b'postag[:1]:N'
-0.147731 pH b'postag[:2]:NN'
-0.150331 Supp b'hUpper'
-0.150331 Supp b'hLower'
-0.151031 Gtype b'-1:postag:SYM'
-0.152040 O b'+1:lemma:rep1'
-0.154569 O b'+1:lemma:-rrb-'
-0.155464 O b'lemma:dissolve'
-0.163005 O b'lemma[:1]:k'
-0.166515 Anti b'+1:lemma:anti-fur'
-0.166530 O b'-1:postag:VBN'
-0.168761 Vess b'hUpper'
-0.168761 Vess b'hLower'
-0.172221 O b'lemma:od600'
-0.173580 O b'+1:lemma:0.3'
-0.174879 O b'+1:lemma:c'
-0.176207 O b'-1:lemma:grow'
-0.180767 Supp b'isUpper'
-0.182914 O b'lemma:phase'
-0.183166 Air b'isUpper'
-0.186591 O b'-1:lemma:-lrb-'
-0.187451 O b'-1:lemma:od600'
-0.193271 O b'+1:lemma:phase'
-0.200473 Air b'+1:postag:-LRB-'
-0.200591 Gtype b'postag[:1]:V'
-0.200591 Gtype b'postag[:2]:VB'
-0.202895 O b'lemma[:2]:ae'
-0.203770 O b'lemma[:1]:d'
-0.213212 Air b'-1:postag:CC'
-0.216984 Technique b'isUpper'
-0.218975 O b'+1:lemma:antibody'
-0.219469 OD b'postag:CD'
-0.219469 OD b'postag[:2]:CD'
-0.220367 Air b'+1:lemma:-lrb-'
-0.229132 O b'lemma[:1]:I'
-0.237062 Med b'+1:postag:NN'
-0.244233 O b'+1:lemma:.'
-0.244233 O b'+1:postag:.'
-0.253501 O b'lemma[:1]:p'
-0.255478 O b'+1:postag:IN'
-0.268269 Air b'+1:postag:JJ'
-0.270663 Supp b'lemma[:2]:an'
-0.277051 O b'+1:lemma:\xc2\xb0c'
-0.289474 Phase b'-1:postag:JJ'
-0.290989 O b'-1:lemma:ompr'
-0.299880 OD b'isNumber'
-0.300487 O b'lemma:of'
-0.300487 O b'lemma[:2]:of'
-0.301898 O b'lemma:wt'
-0.301898 O b'lemma[:2]:wt'
-0.302943 O b'lemma[:2]:0.'
-0.307135 O b'-1:postag:IN'
-0.308105 O b'+1:lemma:fecl2'
-0.311660 Technique b'-1:lemma::'
-0.327682 O b'lemma:37'
-0.327682 O b'lemma[:2]:37'
-0.327793 Supp b'postag[:1]:C'
-0.335851 Phase b'-1:lemma:at'
-0.337349 Supp b'-1:lemma:%'
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