report_Run8_v2.txt
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt
best params:{'c1': 0.37575104918065877, 'c2': 0.014068909404949474}
best CV score:0.8255861440832887
model size: 0.09M
Flat F1: 0.8259332647953259
precision recall f1-score support
OD 0.652 0.405 0.500 37
pH 1.000 1.000 1.000 12
Technique 1.000 1.000 1.000 22
Med 1.000 0.912 0.954 57
Temp 0.818 1.000 0.900 18
Vess 0.000 0.000 0.000 0
Agit 0.000 0.000 0.000 0
Phase 1.000 0.895 0.944 19
Air 0.807 0.742 0.773 62
Anti 0.900 1.000 0.947 9
Strain 1.000 1.000 1.000 1
Gtype 0.883 0.858 0.871 106
Substrain 0.000 0.000 0.000 1
Supp 0.887 0.691 0.777 136
Gversion 0.000 0.000 0.000 0
avg / total 0.880 0.785 0.826 480
Top likely transitions:
OD -> OD 7.084434
Agit -> Agit 6.186786
Temp -> Temp 5.929541
Air -> Air 5.333804
Med -> Med 5.303931
Supp -> Supp 4.741743
Gversion -> Gversion 4.640552
Anti -> Anti 4.494565
Phase -> Phase 4.151550
Gtype -> Gtype 4.131202
Technique -> Technique 3.603317
O -> O 3.497598
pH -> pH 1.761638
O -> Supp 1.456972
Gtype -> Supp 1.262299
Air -> O 1.158446
O -> Technique 0.833897
OD -> Phase 0.824018
O -> Gtype 0.581942
Temp -> O 0.517869
Med -> O 0.476850
Substrain -> Gtype 0.368872
Supp -> O 0.290899
Technique -> Air 0.268494
O -> Anti 0.125794
O -> Gversion 0.041462
O -> OD 0.003049
Gtype -> Air 0.000025
O -> Air -0.236692
Gtype -> O -0.409359
OD -> O -0.632212
Med -> Supp -0.705455
Technique -> O -0.720532
Substrain -> O -0.793543
Agit -> O -0.912986
Top unlikely transitions:
OD -> OD 7.084434
Agit -> Agit 6.186786
Temp -> Temp 5.929541
Air -> Air 5.333804
Med -> Med 5.303931
Supp -> Supp 4.741743
Gversion -> Gversion 4.640552
Anti -> Anti 4.494565
Phase -> Phase 4.151550
Gtype -> Gtype 4.131202
Technique -> Technique 3.603317
O -> O 3.497598
pH -> pH 1.761638
O -> Supp 1.456972
Gtype -> Supp 1.262299
Air -> O 1.158446
O -> Technique 0.833897
OD -> Phase 0.824018
O -> Gtype 0.581942
Temp -> O 0.517869
Med -> O 0.476850
Substrain -> Gtype 0.368872
Supp -> O 0.290899
Technique -> Air 0.268494
O -> Anti 0.125794
O -> Gversion 0.041462
O -> OD 0.003049
Gtype -> Air 0.000025
O -> Air -0.236692
Gtype -> O -0.409359
OD -> O -0.632212
Med -> Supp -0.705455
Technique -> O -0.720532
Substrain -> O -0.793543
Agit -> O -0.912986
Top positive:
5.026788 Anti b'-2:lemma:antibody'
4.581170 O b'word[:2]:re'
4.532914 O b'-2:lemma:_'
4.141075 Technique b'word[:2]:Ch'
4.000190 Air b'lemma:anaerobic'
3.925942 O b'word[:2]:Rp'
3.588650 O b'lemma:1'
3.588650 O b'word:1'
3.545521 O b'postag::'
3.537943 O b'postag:IN'
3.493406 O b'+2:lemma:\xc2\xb0c'
3.393325 Gtype b'-2:lemma:genotype/variation'
3.329554 O b'word:A'
3.068046 Gtype b'word[:1]:\xce\x94'
3.034385 O b'word[:1]:G'
3.015992 O b'word[:1]:S'
2.836526 Supp b'word[:2]:Fe'
2.820630 Air b'word[:2]:Ae'
2.820630 Air b'word:Aerobic'
2.738575 Gtype b'word[:2]:Fl'
2.722116 Air b'word[:1]:A'
2.638126 Temp b'word[:1]:3'
2.523318 O b'lemma:3'
2.523318 O b'word:3'
2.522986 O b'postag:CC'
2.473237 O b'lemma:2'
2.473237 O b'word:2'
2.468222 O b'postag:VBN'
2.391799 Gtype b'-2:lemma:delta'
2.346345 O b'word[:1]:B'
2.285720 Gtype b'lemma:type'
2.285720 Gtype b'word[:2]:ty'
2.285720 Gtype b'word:type'
2.284112 Gtype b'+2:lemma:glucose'
2.211360 Technique b'word[:2]:RN'
2.182686 O b'+1:postag:RB'
2.177098 O b'postag:DT'
2.169923 Phase b'lemma:stationary'
2.169923 Phase b'word:stationary'
2.155319 Anti b'+2:lemma:antibody'
2.151791 O b'lemma:.'
2.151791 O b'postag:.'
2.151791 O b'word:.'
2.145140 Gtype b'-1:lemma:\xe2\x88\x86'
2.145140 Gtype b'-1:word:\xe2\x88\x86'
2.134554 Supp b'-2:lemma:supplement'
2.134313 O b'-1:word:Aerobic'
2.089564 OD b'word[:2]:OD'
2.068607 Supp b'lemma:arginine'
2.061542 O b'isLower'
2.024477 Supp b'lemma:nitrate'
2.024477 Supp b'word[:2]:ni'
2.024477 Supp b'word:nitrate'
1.995233 O b'word[:2]:ge'
1.977149 O b'-1:lemma:tag'
1.954967 O b'+2:lemma:cra'
1.948541 O b'+2:lemma:fructose'
1.925028 Med b'word[:1]:L'
1.908907 Med b'word[:1]:M'
1.872648 Supp b'word[:1]:I'
1.862418 Med b'+2:lemma:with'
1.818612 Phase b'lemma:mid-log'
1.818612 Phase b'word:mid-log'
1.808244 Temp b'-1:word:sample'
1.800900 Supp b'+1:word:hours'
1.794367 O b'lemma:_'
1.794367 O b'word[:1]:_'
1.794367 O b'word:_'
1.771399 O b'-2:lemma:~'
1.768285 Temp b'-1:lemma:sample'
1.765360 OD b'word[:1]:O'
1.739074 O b'word[:2]:ch'
1.734592 Gtype b'word[:1]:d'
1.733152 Supp b'-1:word:Cra'
1.720079 O b'+1:word:ChIP-Seq'
1.719613 O b'+1:postag:VBP'
1.680129 Technique b'word[:1]:R'
1.672356 O b'+2:lemma:chipseq'
1.646401 Supp b'-1:postag:CC'
1.634591 Air b'+2:lemma:37'
1.616241 Gtype b'-2:postag:DT'
1.602328 Supp b'+1:lemma:\xc2\xb5m'
1.602328 Supp b'+1:word:\xc2\xb5M'
1.563258 Gtype b'word[:1]:W'
1.536685 Air b'word[:1]:a'
1.524926 Supp b'-2:lemma:purr'
1.515693 Air b'word[:2]:An'
1.515693 Air b'word:Anaerobic'
1.512353 Supp b'+2:lemma:rifampicin'
1.503664 Med b'word[:1]:g'
1.496011 Supp b'word[:1]:N'
1.494242 O b'-1:lemma:anaerobic'
1.482358 O b'-1:lemma:lb'
1.476473 Gtype b'lemma:nsrr'
1.476473 Gtype b'word[:2]:Ns'
1.476473 Gtype b'word:NsrR'
1.475408 pH b'+1:postag:CD'
1.464474 Supp b'word[:2]:gl'
1.459471 Air b'word[:2]:an'
1.449561 O b'-1:word:tag'
1.441346 O b'-2:lemma:medium'
1.436637 Gtype b'-2:postag:NNS'
1.405198 Phase b'-2:lemma:phase'
1.403755 Supp b'word[:1]:\xc2\xb5'
1.381552 Technique b'word[:1]:C'
1.367426 O b'word[:1]:C'
1.358817 Anti b'word[:2]:an'
1.352736 Supp b'+1:lemma:2'
1.352736 Supp b'+1:word:2'
1.338532 Technique b'symb'
1.327081 pH b'lemma:ph5'
1.327081 pH b'+1:lemma:.5'
1.327081 pH b'word:pH5'
1.327081 pH b'+1:word:.5'
1.320139 O b'lemma:-'
1.320139 O b'word:-'
1.312227 OD b'word[:2]:0.'
1.306758 Air b'-2:postag:CD'
1.306653 Technique b'lemma:ChIP-exo'
1.294854 Supp b'+1:lemma:1'
1.294854 Supp b'+1:word:1'
1.291466 Gtype b'hGreek'
1.288351 Gtype b'lemma:wt'
1.281820 Med b'isUpper'
1.280384 O b'word[:2]:Cu'
1.273897 Strain b'lemma:k-12'
1.273897 Strain b'word[:2]:K-'
1.273897 Strain b'word:K-12'
1.263759 Supp b'lemma:pq'
1.263759 Supp b'word[:2]:PQ'
1.263759 Supp b'word:PQ'
1.262897 Gversion b'postag:CD'
1.260684 Substrain b'lemma:mg1655'
1.260684 Substrain b'word[:2]:MG'
1.260684 Substrain b'word:MG1655'
1.257247 Med b'+2:lemma:b2'
1.250577 Gtype b'word[:2]:cr'
1.245268 Supp b'lemma:Iron'
1.245268 Supp b'word[:2]:Ir'
1.245268 Supp b'word:Iron'
1.245268 Supp b'+1:word:Deficient'
1.245268 Supp b'-2:lemma:Anaerobic'
1.242618 Gtype b'postag:JJ'
1.229834 Gversion b'lemma:chip-seq'
1.223343 O b'+2:postag:JJ'
1.202557 O b'lemma:a'
1.198655 Gtype b'+1:lemma:type'
1.198655 Gtype b'+1:word:type'
1.198344 Strain b'word[:1]:K'
1.192715 Gtype b'lemma:\xe2\x88\x86'
1.192715 Gtype b'word[:1]:\xe2\x88\x86'
1.192715 Gtype b'word:\xe2\x88\x86'
1.191305 O b'+2:lemma:of'
1.187697 Med b'lemma:MOPS'
1.187697 Med b'word[:2]:MO'
1.187697 Med b'word:MOPS'
1.171501 Substrain b'word[:1]:M'
1.171059 Air b'postag:RB'
1.169190 Med b'word[:2]:LB'
1.169190 Med b'word:LB'
1.154631 Gversion b'word:ChIP-Seq'
1.142086 O b'isNumber'
1.141002 Gversion b'-2:lemma:build'
1.140702 Gtype b'-2:lemma:genotype'
1.126546 Technique b'+2:lemma:ph5'
1.113495 O b'+1:postag:NNP'
1.108444 O b'-2:lemma:fructose'
1.100127 O b'-2:lemma:co2'
1.093797 O b'-2:lemma:\xe2\x88\x86'
1.087633 Supp b'+1:lemma:_'
1.087633 Supp b'+1:word:_'
1.087387 O b'word[:1]:H'
1.079339 Anti b'+1:lemma:antibody'
1.079339 Anti b'+1:word:antibody'
1.053803 Supp b'lemma:acetate'
1.053803 Supp b'word:acetate'
1.052666 Supp b'-1:postag:CD'
1.041028 Anti b'-2:lemma:polymerase'
1.026459 O b'+1:postag:VBN'
1.021797 O b'-2:lemma:mid-log'
1.014372 Gtype b'-1:lemma:rpob'
1.014372 Gtype b'-1:word:RpoB'
0.999828 O b'+1:postag:VBZ'
0.999620 Gversion b'+1:postag:CD'
0.998043 O b'word[:2]:Cr'
0.998043 O b'word:Cra'
0.994250 Supp b'word[:2]:0.'
0.985843 O b'lemma:purr'
0.985843 O b'word:PurR'
0.983781 Supp b'word[:1]:1'
0.980764 Gtype b'-2:postag::'
0.978629 O b'lemma:b'
0.978629 O b'word:B'
0.978589 O b'-1:lemma:media'
0.978589 O b'-1:word:media'
0.978508 O b'lemma:at'
0.969017 O b'word[:1]:c'
0.967404 O b'word[:1]:R'
0.958802 O b'word[:1]:E'
0.953468 O b'+1:postag::'
Top negative:
-0.052044 O b'+1:lemma:-rrb-'
-0.052044 O b'+1:word:-RRB-'
-0.056554 O b'word[:2]:ce'
-0.060548 Phase b'-2:postag:NN'
-0.062690 Supp b'+2:lemma:glucose'
-0.064571 Agit b'symb'
-0.065267 O b'+1:lemma:_'
-0.065267 O b'+1:word:_'
-0.068598 O b'-1:lemma:rpob'
-0.068598 O b'-1:word:RpoB'
-0.068684 Gtype b'lemma:_'
-0.068684 Gtype b'word[:1]:_'
-0.068684 Gtype b'word:_'
-0.074203 Air b'+2:lemma:and'
-0.074727 O b'-1:lemma:iptg'
-0.074727 O b'-1:word:IPTG'
-0.074850 OD b'+1:postag:CD'
-0.077216 O b'+2:lemma:+'
-0.078067 Temp b'+2:lemma:to'
-0.078067 Temp b'+2:postag:TO'
-0.079117 O b'+2:lemma:mg1655'
-0.079758 O b'word[:2]:30'
-0.080740 Anti b'+2:postag:JJ'
-0.083302 Air b'-1:postag:RB'
-0.083969 O b'-2:lemma:anaerobically'
-0.084742 Supp b'isNumber'
-0.086180 O b'+2:lemma:anaerobically'
-0.092175 O b'-2:postag:-LRB-'
-0.095060 O b'word[:1]:F'
-0.097644 Air b'postag:CC'
-0.099744 O b'lemma:k-12'
-0.099744 O b'word[:2]:K-'
-0.099744 O b'word:K-12'
-0.106457 O b'lemma:media'
-0.106457 O b'word:media'
-0.108219 O b'+1:lemma:until'
-0.108219 O b'+1:word:until'
-0.108963 Supp b'lemma:2'
-0.108963 Supp b'word:2'
-0.110990 OD b'+1:postag:IN'
-0.111975 Gtype b'-1:postag:NN'
-0.112503 O b'+1:word:cells'
-0.113137 Gtype b'-1:lemma:,'
-0.113137 Gtype b'-1:postag:,'
-0.113137 Gtype b'-1:word:,'
-0.116950 O b'-1:lemma:37'
-0.116950 O b'-1:word:37'
-0.117677 O b'-1:word:the'
-0.120669 O b'+1:lemma:supplement'
-0.120669 O b'+1:word:supplemented'
-0.121823 O b'+1:postag:-RRB-'
-0.121829 O b'word[:1]:p'
-0.129179 O b'+2:lemma:-rrb-'
-0.130177 O b'-1:lemma:mid-log'
-0.130177 O b'-1:word:mid-log'
-0.133448 O b'-1:lemma:the'
-0.133564 O b'word[:2]:Fe'
-0.134575 O b'+1:lemma:cell'
-0.135676 O b'-1:lemma:nsrr'
-0.135676 O b'-1:word:NsrR'
-0.136278 Med b'-2:lemma:grow'
-0.137702 OD b'-2:postag:JJ'
-0.138850 O b'+2:lemma:a'
-0.139158 O b'postag:NN'
-0.141309 Air b'-2:postag:RB'
-0.142269 Temp b'-2:postag:NN'
-0.150696 Air b'-2:postag:CC'
-0.152422 OD b'postag:CD'
-0.155346 Gtype b'isNumber'
-0.157347 O b'lemma:phase'
-0.157347 O b'word:phase'
-0.158371 Supp b'hGreek'
-0.162404 O b'+2:lemma:medium'
-0.163618 O b'-2:postag:-RRB-'
-0.166539 O b'+2:postag:RB'
-0.168007 Supp b'+2:postag:NNS'
-0.169738 O b'lemma:of'
-0.169738 O b'word[:2]:of'
-0.169738 O b'word:of'
-0.172303 O b'+2:lemma:.'
-0.172303 O b'+2:postag:.'
-0.172600 O b'-1:lemma:sample'
-0.178258 O b'+1:word:hours'
-0.185213 Anti b'+2:lemma:polyclonal'
-0.186446 O b'word[:2]:OD'
-0.187064 O b'+1:lemma:g/l'
-0.187064 O b'+1:word:g/L'
-0.189574 O b'lemma:2h'
-0.189574 O b'-1:lemma:additional'
-0.189574 O b'word[:2]:2h'
-0.189574 O b'word:2h'
-0.189574 O b'-1:word:additional'
-0.189977 O b'-1:postag:-LRB-'
-0.192454 O b'+1:lemma:.'
-0.192454 O b'+1:postag:.'
-0.192454 O b'+1:word:.'
-0.198550 Gtype b'+2:lemma:,'
-0.198550 Gtype b'+2:postag:,'
-0.199077 Supp b'+2:lemma:-rrb-'
-0.209538 Supp b'+2:postag:-RRB-'
-0.216556 O b'lemma:methanol'
-0.216556 O b'word:methanol'
-0.216556 O b'-2:lemma:dissolve'
-0.222399 O b'+2:lemma:b'
-0.230362 Supp b'-2:postag:JJ'
-0.230473 O b'-1:lemma:dissolve'
-0.230473 O b'+1:lemma:methanol'
-0.230473 O b'-1:word:dissolved'
-0.230473 O b'+1:word:methanol'
-0.246071 Temp b'postag:NN'
-0.253325 O b'-1:lemma:grow'
-0.262317 Temp b'isLower'
-0.263799 O b'word[:2]:gl'
-0.265145 OD b'isLower'
-0.271959 O b'-2:lemma:50'
-0.277605 O b'-2:postag:RB'
-0.294527 O b'+2:lemma:rifampicin'
-0.296283 Supp b'isUpper'
-0.303601 O b'+1:postag:VBG'
-0.305609 Gtype b'postag:NNP'
-0.306835 O b'-2:postag:DT'
-0.307435 O b'word[:2]:ri'
-0.308156 O b'-1:lemma:co2'
-0.308156 O b'-1:word:CO2'
-0.308934 Med b'+1:postag:NN'
-0.312777 O b'-1:postag:IN'
-0.331437 O b'-2:lemma:a'
-0.342737 O b'word[:1]:K'
-0.345243 Anti b'+1:lemma:anti-fur'
-0.345243 Anti b'+1:word:anti-Fur'
-0.357708 Agit b'hUpper'
-0.357708 Agit b'hLower'
-0.360267 Supp b'word[:2]:an'
-0.374118 O b'+1:postag:NNS'
-0.375266 O b'-2:postag:VBG'
-0.382105 Phase b'postag:JJ'
-0.396801 Med b'symb'
-0.399800 O b'word[:1]:g'
-0.401641 Med b'-2:postag:NNP'
-0.404890 OD b'+1:postag:NN'
-0.415691 Phase b'hUpper'
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