********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70_v4.txt

best params:{'c1': 0.12822074735920433, 'c2': 0.028255623123597452}
best CV score:0.8237380408677073
model size: 0.08M

Flat F1: 0.8193415910917898
             precision    recall  f1-score   support

         OD      0.789     0.405     0.536        37
         pH      1.000     1.000     1.000        12
  Technique      1.000     0.909     0.952        22
        Med      0.898     0.930     0.914        57
       Temp      0.818     1.000     0.900        18
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         0
      Phase      1.000     0.947     0.973        19
        Air      0.810     0.758     0.783        62
       Anti      1.000     0.667     0.800         9
     Strain      1.000     1.000     1.000         1
      Gtype      0.927     0.840     0.881       106
  Substrain      0.000     0.000     0.000         1
       Supp      0.883     0.669     0.762       136
   Gversion      0.000     0.000     0.000         0

avg / total      0.889     0.771     0.819       480


Top likely transitions:
Agit   -> Agit    6.565409
OD     -> OD      6.231734
Temp   -> Temp    5.402921
Med    -> Med     5.359382
Anti   -> Anti    5.104770
O      -> O       4.742896
Air    -> Air     4.719911
Supp   -> Supp    4.287498
Phase  -> Phase   4.241142
Gtype  -> Gtype   4.089050
Gversion -> Gversion 4.032429
Technique -> Technique 3.850995
pH     -> pH      1.963947
O      -> Supp    1.603550
Air    -> O       1.398467
O      -> Technique 1.240044
Substrain -> Gtype   1.119453
O      -> Gtype   0.875238
Gtype  -> Supp    0.858295
O      -> Temp    0.596269
Phase  -> O       0.564175
O      -> Anti    0.517085
Med    -> O       0.386943
Supp   -> O       0.353705
O      -> Gversion 0.348096
Temp   -> O       0.185839
OD     -> Phase   0.161408
Technique -> Air     0.128857
O      -> pH      0.118475
O      -> Strain  0.096954
O      -> Med     0.052178
Anti   -> O       0.009171
O      -> Phase   0.000467
O      -> OD      -0.005897
Phase  -> Technique -0.012764
Supp   -> Temp    -0.013683
Technique -> Gtype   -0.021909
Supp   -> OD      -0.033848
Phase  -> Air     -0.069264
Supp   -> Air     -0.090838
Gtype  -> Technique -0.113048
Gtype  -> Gversion -0.157086
Gtype  -> Phase   -0.202957
Technique -> pH      -0.208178
Gtype  -> O       -0.210311
OD     -> Gtype   -0.231184
Air    -> Supp    -0.257429
Technique -> OD      -0.285302
Technique -> O       -0.341935
Supp   -> Gversion -0.342115


Top unlikely transitions:
Air    -> O       1.398467
O      -> Technique 1.240044
Substrain -> Gtype   1.119453
O      -> Gtype   0.875238
Gtype  -> Supp    0.858295
O      -> Temp    0.596269
Phase  -> O       0.564175
O      -> Anti    0.517085
Med    -> O       0.386943
Supp   -> O       0.353705
O      -> Gversion 0.348096
Temp   -> O       0.185839
OD     -> Phase   0.161408
Technique -> Air     0.128857
O      -> pH      0.118475
O      -> Strain  0.096954
O      -> Med     0.052178
Anti   -> O       0.009171
O      -> Phase   0.000467
O      -> OD      -0.005897
Phase  -> Technique -0.012764
Supp   -> Temp    -0.013683
Technique -> Gtype   -0.021909
Supp   -> OD      -0.033848
Phase  -> Air     -0.069264
Supp   -> Air     -0.090838
Gtype  -> Technique -0.113048
Gtype  -> Gversion -0.157086
Gtype  -> Phase   -0.202957
Technique -> pH      -0.208178
Gtype  -> O       -0.210311
OD     -> Gtype   -0.231184
Air    -> Supp    -0.257429
Technique -> OD      -0.285302
Technique -> O       -0.341935
Supp   -> Gversion -0.342115
Gtype  -> Med     -0.344684
Supp   -> Gtype   -0.358479
Air    -> Temp    -0.449831
OD     -> O       -0.500326
Gtype  -> Anti    -0.517041
Agit   -> O       -0.543034
O      -> Air     -0.641599
Phase  -> OD      -0.787199
OD     -> Air     -0.831209
Supp   -> Technique -0.892537
Supp   -> Med     -0.914717
Gtype  -> OD      -0.923871
Substrain -> O       -0.971193
Med    -> Supp    -1.319670


Top positive:
6.042889 O        b'lemma:1'
5.378037 O        b'lemma:2'
4.814602 O        b'word[:2]:re'
4.742997 O        b'lemma:3'
4.604194 Air      b'word[:2]:Ae'
4.582747 O        b'-1:lemma:tag'
4.358279 Technique b'word[:2]:Ch'
4.152239 Air      b'lemma:anaerobic'
4.066499 O        b'lemma:a'
4.065258 O        b'lemma:_'
4.065258 O        b'word[:1]:_'
4.064588 O        b'postag:IN'
3.716431 O        b'postag::'
3.606992 Gtype    b'word[:2]:Fl'
3.524792 Phase    b'lemma:mid-log'
3.467339 Gtype    b'lemma:arca8myc'
3.410721 O        b'lemma:with'
3.368507 Phase    b'lemma:stationary'
3.359342 Gtype    b'word[:1]:\xce\x94'
3.271176 O        b'+1:lemma:od600'
3.232433 Gtype    b'-1:lemma:\xe2\x88\x86'
3.205920 Med      b'word[:2]:LB'
3.145263 O        b'lemma:.'
3.145263 O        b'postag:.'
3.128776 Supp     b'+1:lemma:\xc2\xb5m'
3.096928 O        b'-1:lemma:Aerobic'
3.056649 O        b'word[:1]:S'
3.049272 O        b'word[:2]:ge'
2.996386 O        b'postag:VBN'
2.992231 O        b'word[:2]:Rp'
2.901111 Supp     b'lemma:Iron'
2.901111 Supp     b'word[:2]:Ir'
2.888425 Supp     b'lemma:arginine'
2.815369 Supp     b'word[:1]:I'
2.784841 Supp     b'lemma:nitrate'
2.784841 Supp     b'word[:2]:ni'
2.775372 Med      b'word[:1]:M'
2.760314 Air      b'-1:lemma:ChIP-Seq'
2.752516 Supp     b'-1:lemma:Cra'
2.738888 O        b'lemma:delta'
2.690700 Anti     b'+1:lemma:antibody'
2.680938 Technique b'word[:2]:RN'
2.640855 O        b'-1:lemma:0.3-0.35'
2.630147 O        b'word[:2]:Cu'
2.628890 O        b'word[:2]:Cr'
2.628035 Supp     b'+1:lemma:1'
2.611639 Air      b'word[:2]:An'
2.563252 Supp     b'+1:lemma:2'
2.537665 Gtype    b'word[:2]:cr'
2.505368 Air      b'word[:1]:A'
2.488531 O        b'word[:1]:G'
2.467070 O        b'+1:postag:RB'
2.451239 O        b'lemma:argr'
2.433577 Gtype    b'lemma:flag-tag'
2.433577 Gtype    b'-1:lemma:c-terminal'
2.391502 O        b'word[:1]:B'
2.376551 O        b'+1:lemma:pq'
2.369827 O        b'lemma:-'
2.356850 O        b'lemma:A'
2.330843 O        b'postag:CC'
2.301360 Med      b'word[:1]:L'
2.282908 Gtype    b'word[:1]:d'
2.281497 O        b'+1:lemma:mid-log'
2.281275 O        b'+1:lemma:o.d.'
2.274064 O        b'-1:lemma:glucose'
2.272588 Gversion b'-1:lemma:nc'
2.261134 Supp     b'lemma:pq'
2.261134 Supp     b'word[:2]:PQ'
2.254663 O        b'word[:2]:ch'
2.242812 O        b'lemma:at'
2.229584 O        b'-1:lemma:lb'
2.216086 Gtype    b'-1:lemma:_'
2.208080 O        b'-1:lemma:anaerobic'
2.203650 Gtype    b'lemma:type'
2.203650 Gtype    b'word[:2]:ty'
2.188456 Med      b'lemma:MOPS'
2.188456 Med      b'word[:2]:MO'
2.154914 OD       b'word[:1]:O'
2.150169 Supp     b'-1:lemma:+'
2.148437 Supp     b'+1:lemma:hour'
2.145965 O        b'lemma:purr'
2.130562 Strain   b'lemma:k-12'
2.130562 Strain   b'word[:2]:K-'
2.128273 Gversion b'lemma:chip-seq'
2.124653 Gversion b'lemma:asm584v2'
2.124653 Gversion b'word[:2]:AS'
2.114191 Supp     b'word[:2]:mg'
2.079751 Gtype    b'lemma:wt'
2.079618 Strain   b'word[:1]:K'
2.074663 O        b'lemma:rpob'
2.068933 OD       b'+1:lemma:stationary'
2.065663 Gversion b'word[:2]:00'
2.061985 O        b'lemma:b'
2.056038 Temp     b'-1:lemma:sample'
2.053114 Phase    b'word[:2]:st'
2.043604 O        b'postag:DT'
2.037822 O        b'word[:2]:Lr'
2.022730 Gtype    b'lemma:nsrr'
2.022730 Gtype    b'word[:2]:Ns'
2.021608 Temp     b'-1:lemma:\xcf\x8332'
2.002870 Gversion b'lemma:nc'
2.002870 Gversion b'word[:2]:NC'
1.998257 Supp     b'lemma:fructose'
1.989806 OD       b'word[:2]:OD'
1.984624 O        b'word[:2]:fo'
1.983155 Med      b'+1:lemma:0.4'
1.978931 Air      b'postag:RB'
1.970422 O        b'lemma:\xcf\x8332'
1.970422 O        b'word[:1]:\xcf\x83'
1.970422 O        b'word[:2]:\xcf\x833'
1.968991 Substrain b'lemma:mg1655'
1.968991 Substrain b'word[:2]:MG'
1.949696 O        b'lemma:Custom'
1.942668 pH       b'lemma:ph5'
1.942668 pH       b'+1:lemma:.5'
1.942559 O        b'-1:lemma:type'
1.939421 Gtype    b'word[:1]:W'
1.927720 O        b'lemma:0.4'
1.918769 Air      b'lemma:aerobic'
1.911973 Supp     b'lemma:rifampicin'
1.899971 Supp     b'word[:2]:ri'
1.892762 O        b'-1:lemma:stpa'
1.891369 Supp     b'word[:2]:gl'
1.883496 Vess     b'lemma:flask'
1.883496 Vess     b'-1:lemma:warm'
1.883496 Vess     b'word[:2]:fl'
1.866473 Gtype    b'+1:lemma:type'
1.858048 Gtype    b'hGreek'
1.846301 Substrain b'word[:1]:M'
1.843289 Gtype    b'+1:lemma:flagtag'
1.839432 Supp     b'-1:lemma:with'
1.808519 Anti     b'word[:2]:an'
1.796182 Supp     b'word[:2]:Fe'
1.770222 Air      b'-1:lemma:co2'
1.757419 O        b'+1:postag:NNP'
1.756260 Supp     b'lemma:acetate'
1.756125 Air      b'-1:lemma:phase'
1.744786 Supp     b'word[:1]:2'
1.742628 Temp     b'lemma:43'
1.742628 Temp     b'word[:2]:43'
1.737898 Technique b'lemma:ChIP-exo'
1.733503 Gtype    b'lemma:fnr8myc'
1.733503 Gtype    b'word[:2]:Fn'
1.717668 O        b'+1:lemma:chip-seq'
1.717668 O        b'word[:2]:In'
1.711566 Supp     b'+1:lemma:_'
1.706442 O        b'+1:lemma:anerobically'
1.702869 Temp     b'-1:lemma:43'
1.697874 O        b'word[:1]:E'
1.679257 O        b'+1:lemma:nacl'
1.676751 Temp     b'word[:1]:3'
1.674101 Strain   b'+1:lemma:substr'
1.668117 Gtype    b'+1:lemma::'
1.662871 Gtype    b'-1:lemma:rpob'
1.659272 Phase    b'+1:lemma:for'
1.658740 Med      b'+1:lemma:-lrb-'
1.653292 Supp     b'lemma:nacl'
1.645217 Med      b'+1:postag:-LRB-'
1.644387 Phase    b'-1:lemma:until'
1.633923 Supp     b'word[:2]:0.'
1.631245 O        b'word[:2]:Om'
1.629217 O        b'-1:lemma:\xc2\xb0c'
1.609945 O        b'lemma:antibody'
1.602620 O        b'word[:2]:Pu'
1.596753 Supp     b'word[:2]:ac'
1.589715 Gtype    b'word[:2]:so'
1.579402 Supp     b'+1:postag:CC'
1.576836 Med      b'+1:lemma:supplement'
1.575982 Gtype    b'-1:postag:VBG'
1.572483 Supp     b'lemma:nh4cl'
1.572483 Supp     b'word[:2]:NH'
1.571642 Gtype    b'lemma:\xe2\x88\x86'
1.571642 Gtype    b'word[:1]:\xe2\x88\x86'
1.541168 Air      b'+1:lemma:at'
1.539300 O        b'-1:lemma:dpd'
1.538899 Technique b'lemma:rnaseq'
1.524271 pH       b'+1:postag:CD'
1.521425 O        b'lemma:oxyr'
1.521425 O        b'word[:2]:Ox'
1.520812 Supp     b'word[:1]:\xc2\xb5'
1.518532 pH       b'lemma:.5'
1.518532 pH       b'-1:lemma:ph5'
1.518532 pH       b'word[:2]:.5'
1.516502 O        b'+1:postag::'
1.513634 Temp     b'+1:lemma:\xc2\xb0c'
1.512169 Supp     b'+1:lemma:and'
1.512098 Gtype    b'-1:lemma:ptac'
1.512061 O        b'word[:1]:C'
1.511111 Supp     b'word[:1]:1'
1.508414 O        b'postag:VBG'
1.489242 Med      b'postag:NNP'
1.476047 O        b'-1:lemma:0.3'
1.472256 Air      b'word[:2]:an'
1.471863 Air      b'-1:lemma:_'
1.463959 O        b'word[:1]:c'
1.460284 O        b'lemma:for'
1.457885 Gtype    b'+1:lemma:with'
1.450344 Gversion b'word[:2]:Ch'
1.449241 O        b'word[:2]:or'
1.445626 Gversion b'lemma:.2'


Top negative:
-0.086688 Air      b'symb'
-0.087278 O        b'+1:postag:JJ'
-0.088979 O        b'lemma:0.1'
-0.090012 Gtype    b'lemma:,'
-0.090012 Gtype    b'postag:,'
-0.090760 O        b'word[:1]:M'
-0.091539 O        b'-1:lemma:g/l'
-0.092936 Gtype    b'word[:1]:,'
-0.093150 O        b'word[:1]:p'
-0.094182 Phase    b'-1:postag:JJ'
-0.096715 O        b'lemma:e.'
-0.096913 O        b'-1:postag:IN'
-0.097475 Gtype    b'-1:lemma:mg1655'
-0.097915 Gtype    b'+1:lemma:cra'
-0.098266 Supp     b'-1:postag:NN'
-0.099523 Gtype    b'+1:lemma:-rrb-'
-0.101642 OD       b'+1:lemma:0.4'
-0.103503 Gversion b'-1:postag:NN'
-0.104284 Technique b'-1:lemma::'
-0.107474 Air      b'-1:postag:CC'
-0.107802 Supp     b'+1:lemma:dpd'
-0.109425 O        b'lemma:k-12'
-0.109425 O        b'word[:2]:K-'
-0.109862 Gtype    b'-1:postag:SYM'
-0.110589 O        b'-1:lemma:n2'
-0.116375 Med      b'postag:NN'
-0.118693 O        b'lemma:o2'
-0.118693 O        b'word[:2]:O2'
-0.124126 O        b'word[:1]:g'
-0.128725 O        b'-1:lemma:e.'
-0.131057 O        b'-1:postag:VBN'
-0.134797 Supp     b'-1:postag:NNP'
-0.134945 Vess     b'hUpper'
-0.134945 Vess     b'hLower'
-0.141446 O        b'lemma:\xc2\xb0c'
-0.141446 O        b'word[:1]:\xc2\xb0'
-0.141446 O        b'word[:2]:\xc2\xb0C'
-0.148538 O        b'-1:lemma:mm'
-0.150981 O        b'word[:2]:cr'
-0.154676 OD       b'postag:IN'
-0.155036 O        b'word[:2]:LB'
-0.160269 O        b'-1:lemma:o2'
-0.172623 O        b'word[:2]:20'
-0.179442 O        b'+1:lemma:fecl2'
-0.180162 O        b'+1:lemma:or'
-0.181662 Supp     b'-1:postag:VBG'
-0.183004 Air      b'postag:CC'
-0.184330 O        b'+1:lemma:_'
-0.190642 Gtype    b'+1:postag:CD'
-0.193285 Phase    b'-1:lemma:at'
-0.196188 O        b'lemma:od600'
-0.197981 O        b'-1:postag:-LRB-'
-0.201396 pH       b'postag:NN'
-0.204068 O        b'lemma:co2'
-0.204068 O        b'word[:2]:CO'
-0.204520 Supp     b'+1:lemma:acetate'
-0.206835 O        b'+1:lemma:delta'
-0.210712 O        b'word[:2]:gl'
-0.213914 O        b'-1:lemma:0.2'
-0.219505 O        b'+1:lemma:300'
-0.223188 O        b'word[:2]:de'
-0.223436 Gtype    b'-1:postag:NN'
-0.224373 O        b'-1:lemma:the'
-0.225222 OD       b'postag:-LRB-'
-0.225222 OD       b'word[:2]:-L'
-0.226307 OD       b'lemma:-lrb-'
-0.227748 O        b'+1:lemma:dissolve'
-0.230155 Med      b'+1:postag:NN'
-0.234353 Air      b'-1:lemma:or'
-0.235996 Gtype    b'word[:1]:A'
-0.238857 Gtype    b'+1:lemma:-lrb-'
-0.240915 O        b'+1:lemma:-lcb-'
-0.245779 O        b'+1:lemma:%'
-0.254436 O        b'+1:lemma:.'
-0.254436 O        b'+1:postag:.'
-0.256154 O        b'-1:lemma:od600'
-0.258786 Supp     b'lemma:2'
-0.267133 O        b'lemma:dpd'
-0.267133 O        b'word[:2]:DP'
-0.268311 Temp     b'-1:lemma:\xc2\xb0c'
-0.268819 O        b'lemma:dissolve'
-0.269284 O        b'+1:lemma:minimal'
-0.273587 O        b'-1:lemma:um'
-0.273587 O        b'+1:lemma:paraquat'
-0.283755 O        b'+1:lemma:until'
-0.290161 O        b'word[:2]:30'
-0.295390 Supp     b'+1:postag:VBN'
-0.301685 Anti     b'+1:lemma:anti-fur'
-0.310527 Med      b'-1:postag:NN'
-0.313589 O        b'+1:lemma:arginine'
-0.329477 Temp     b'postag:NN'
-0.330016 Gtype    b'word[:1]:g'
-0.331259 O        b'lemma:150'
-0.331259 O        b'+1:lemma:mg/ml'
-0.331259 O        b'word[:2]:15'
-0.343722 O        b'+1:lemma:antibody'
-0.345190 O        b'+1:lemma:rep1'
-0.346985 O        b'word[:2]:mg'
-0.352336 O        b'-1:lemma:until'
-0.352901 O        b'lemma:\xe2\x88\x86'
-0.352901 O        b'word[:1]:\xe2\x88\x86'
-0.368005 OD       b'+1:postag:CD'
-0.374288 O        b'word[:2]:OD'
-0.379040 Technique b'-1:postag::'
-0.379664 O        b'word[:1]:K'
-0.381633 Gtype    b'-1:lemma:,'
-0.381633 Gtype    b'-1:postag:,'
-0.382431 O        b'+1:postag:CD'
-0.395128 O        b'lemma:of'
-0.395128 O        b'word[:2]:of'
-0.403132 O        b'+1:lemma:-rrb-'
-0.408197 O        b'-1:lemma:1'
-0.409223 Agit     b'symb'
-0.412681 O        b'+1:lemma:c'
-0.421053 O        b'word[:2]:me'
-0.422060 O        b'lemma:2h'
-0.422060 O        b'-1:lemma:additional'
-0.422060 O        b'word[:2]:2h'
-0.432550 O        b'+1:lemma:\xc2\xb0c'
-0.442411 O        b'-1:lemma:ml'
-0.474987 O        b'lemma:20'
-0.493548 Agit     b'hUpper'
-0.493548 Agit     b'hLower'
-0.497447 O        b'-1:lemma:grow'
-0.508442 O        b'+1:postag:-RRB-'
-0.511400 O        b'lemma:anaerobic'
-0.515457 O        b'lemma:37'
-0.515457 O        b'word[:2]:37'
-0.516266 Anti     b'+1:postag:JJ'
-0.527188 Supp     b'+1:lemma:rifampicin'
-0.529171 O        b'lemma:anaerobically'
-0.542987 O        b'word[:2]:ce'
-0.545817 O        b'word[:2]:Fe'
-0.550246 OD       b'+1:postag:NN'
-0.555017 O        b'-1:lemma:\xe2\x88\x86'
-0.585692 O        b'word[:2]:ri'
-0.590663 O        b'+1:lemma:cell'
-0.598318 O        b'word[:1]:F'
-0.602384 Temp     b'+1:lemma:to'
-0.602384 Temp     b'+1:postag:TO'
-0.630497 O        b'-1:lemma:ompr'
-0.651154 O        b'+1:postag:IN'
-0.657357 Air      b'+1:postag:JJ'
-0.662332 O        b'+1:postag:NNS'
-0.671056 O        b'-1:lemma:cra'
-0.677411 O        b'postag:RB'
-0.683285 O        b'postag:VBP'
-0.704946 Anti     b'postag:NNP'
-0.717280 Med      b'+1:postag:IN'
-0.747461 Phase    b'hUpper'
-0.747461 Phase    b'hLower'
-0.771466 Supp     b'postag:CD'
-0.774933 O        b'word[:1]:N'
-0.784937 Med      b'symb'
-0.797919 O        b'word[:2]:0.'
-0.823981 O        b'word[:1]:d'
-0.834163 O        b'lemma:methanol'
-0.845016 Supp     b'word[:2]:an'
-0.863890 Temp     b'hGreek'
-0.887768 O        b'+1:lemma:supplement'
-0.891809 O        b'lemma:mid-log'
-0.932608 O        b'-1:lemma:dissolve'
-0.932608 O        b'+1:lemma:methanol'
-0.938549 Supp     b'-1:lemma:%'
-0.941138 O        b'+1:lemma:at'
-0.941437 O        b'+1:postag:VBG'
-0.966149 O        b'-1:lemma:IP'
-0.967650 O        b'lemma:rifampicin'
-0.971114 O        b'word[:1]:0'
-1.027819 Supp     b'word[:1]:C'
-1.038642 O        b'-1:lemma:co2'
-1.053342 O        b'-1:lemma:sample'
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