report_Run2_v10.txt 45.3 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.011352300404393029, 'c2': 0.06102124341797182}
best CV score:0.8263737544180966
model size: 0.11M

Flat F1: 0.8035657443886721
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.821     0.902        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.895     0.386     0.540        88
       Anti      0.750     0.923     0.828        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.923     0.769     0.839        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.870     0.838     0.854       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.906     0.746     0.804       484


Top likely transitions:
Supp   -> Supp    5.394298
OD     -> OD      4.937904
Temp   -> Temp    4.806066
Med    -> Med     4.669024
Gtype  -> Gtype   4.330886
Anti   -> Anti    4.327028
Air    -> Air     3.890483
Phase  -> Phase   3.776171
Gversion -> Gversion 3.653309
O      -> O       3.482280
pH     -> pH      3.118197
Technique -> Technique 2.494407
Agit   -> Agit    2.283948
Substrain -> Gtype   1.618165
O      -> Supp    1.356633
Gtype  -> Supp    1.215860
Technique -> Air     1.015071
Air    -> O       0.879065
O      -> Gtype   0.725067
O      -> Technique 0.684516
Supp   -> O       0.593773
Strain -> O       0.327167
Gtype  -> pH      0.306502
Gtype  -> Air     0.300597
O      -> Strain  0.254321
Temp   -> O       0.216050
O      -> Temp    0.142158
O      -> pH      0.137855
Med    -> O       0.128554
O      -> Vess    0.115239
O      -> Phase   0.106649
Vess   -> O       0.054049
OD     -> O       0.018803
Vess   -> Temp    -0.000000
Agit   -> O       -0.000465
Strain -> pH      -0.003239
Strain -> OD      -0.006723
Med    -> Phase   -0.006863
Vess   -> Air     -0.007022
Temp   -> Phase   -0.008757
Strain -> Phase   -0.009809
Temp   -> Gversion -0.010618
Agit   -> Vess    -0.011877
Agit   -> OD      -0.011895
Anti   -> Substrain -0.012233
Temp   -> pH      -0.014480
Gtype  -> Strain  -0.015511
Substrain -> OD      -0.018691
Gversion -> Phase   -0.019033
Agit   -> Med     -0.019715
Substrain -> Med     -0.025227
OD     -> Gversion -0.028789
OD     -> Agit    -0.031958
Technique -> Strain  -0.032764
Temp   -> Anti    -0.036466
Med    -> Anti    -0.037148
Phase  -> Gversion -0.037489
Strain -> Air     -0.045187
Med    -> Agit    -0.045359
Gversion -> Agit    -0.049117
O      -> Agit    -0.052807
Med    -> Gversion -0.058509
O      -> OD      -0.059513
Gversion -> Anti    -0.059625
Supp   -> Substrain -0.060399
Strain -> Supp    -0.061240
Temp   -> Technique -0.061693
Substrain -> pH      -0.075018
Med    -> OD      -0.075117
pH     -> O       -0.078247
Gversion -> pH      -0.079201
Gtype  -> Vess    -0.084401
Agit   -> Gtype   -0.084433
Anti   -> Gversion -0.085513
Air    -> Anti    -0.086934
Air    -> Substrain -0.087320
Substrain -> Air     -0.092068
Supp   -> Vess    -0.100838
pH     -> Gtype   -0.101523
Supp   -> Agit    -0.103330
Substrain -> Supp    -0.104163
Phase  -> pH      -0.106934
pH     -> Gversion -0.110514
Agit   -> Supp    -0.110710
Gversion -> OD      -0.118720
pH     -> Med     -0.120765
Technique -> Substrain -0.124333
Temp   -> OD      -0.124803
Agit   -> Technique -0.126062
OD     -> pH      -0.126135
Med    -> pH      -0.135090
Strain -> Gtype   -0.137670
Gversion -> Temp    -0.140081
Temp   -> Supp    -0.140781
Gversion -> Med     -0.145001
Technique -> Phase   -0.149971
pH     -> OD      -0.158808
Air    -> Gversion -0.164962
OD     -> Gtype   -0.175005
Anti   -> OD      -0.177311
Technique -> Agit    -0.188545
Gtype  -> Agit    -0.190747
Phase  -> Temp    -0.199230
Air    -> pH      -0.199912
pH     -> Temp    -0.209132
Temp   -> Gtype   -0.215784
Technique -> Anti    -0.219246
Med    -> Gtype   -0.229252
Phase  -> Air     -0.229360
Med    -> Temp    -0.229826
OD     -> Med     -0.231274
Phase  -> Supp    -0.233064
Air    -> Gtype   -0.237201
Anti   -> Phase   -0.240820
Phase  -> Anti    -0.242672
pH     -> Agit    -0.243587
Technique -> Temp    -0.248417
Supp   -> Phase   -0.249152
pH     -> Supp    -0.251251
Anti   -> Air     -0.275725
Anti   -> Technique -0.277102
Supp   -> OD      -0.277243
pH     -> Air     -0.277588
Anti   -> O       -0.280521
Gversion -> Technique -0.288465
Gtype  -> Substrain -0.289466
O      -> Gversion -0.304553
Supp   -> Anti    -0.308215
Supp   -> pH      -0.309430
Gversion -> Supp    -0.315506
O      -> Anti    -0.317267
Supp   -> Gversion -0.332661
Med    -> Air     -0.341726
Air    -> Technique -0.342813
OD     -> Temp    -0.347426
Air    -> OD      -0.354488
Gversion -> Gtype   -0.358129
O      -> Substrain -0.358481
Supp   -> Technique -0.359119
Anti   -> pH      -0.370007
Phase  -> Gtype   -0.374882
OD     -> Supp    -0.391073
Supp   -> Temp    -0.398053
Agit   -> Air     -0.400839
Gversion -> Air     -0.427526
Supp   -> Air     -0.438001
Phase  -> O       -0.444083
Temp   -> Air     -0.446613
OD     -> Technique -0.447507
Supp   -> Gtype   -0.479558
Med    -> Technique -0.479633
Gtype  -> OD      -0.482386
Anti   -> Supp    -0.502669
Air    -> Supp    -0.521620
Phase  -> Med     -0.527222
Technique -> Supp    -0.530825
Air    -> Temp    -0.537302
Phase  -> OD      -0.553240
Technique -> Med     -0.554966
Anti   -> Med     -0.556415
Technique -> Gversion -0.576234
Gtype  -> Technique -0.578610
Gversion -> O       -0.596864
Anti   -> Gtype   -0.600891
Air    -> Med     -0.641550
Gtype  -> Gversion -0.653824
Air    -> Agit    -0.661881
Air    -> Phase   -0.662152
Gtype  -> Phase   -0.712276
Gtype  -> O       -0.804026
Phase  -> Technique -0.818321
O      -> Med     -0.832454
Temp   -> Med     -0.859780
Technique -> OD      -0.888604
Gtype  -> Temp    -0.918261
Gtype  -> Med     -0.933716
Anti   -> Temp    -0.941880
Gtype  -> Anti    -0.999302
Technique -> Gtype   -1.021174
OD     -> Air     -1.058773
Technique -> O       -1.118280
Substrain -> O       -1.293959
Supp   -> Med     -1.294484
O      -> Air     -1.377340
Med    -> Supp    -1.515948
Technique -> pH      -1.970735


Top unlikely transitions:
Supp   -> Supp    5.394298
OD     -> OD      4.937904
Temp   -> Temp    4.806066
Med    -> Med     4.669024
Gtype  -> Gtype   4.330886
Anti   -> Anti    4.327028
Air    -> Air     3.890483
Phase  -> Phase   3.776171
Gversion -> Gversion 3.653309
O      -> O       3.482280
pH     -> pH      3.118197
Technique -> Technique 2.494407
Agit   -> Agit    2.283948
Substrain -> Gtype   1.618165
O      -> Supp    1.356633
Gtype  -> Supp    1.215860
Technique -> Air     1.015071
Air    -> O       0.879065
O      -> Gtype   0.725067
O      -> Technique 0.684516
Supp   -> O       0.593773
Strain -> O       0.327167
Gtype  -> pH      0.306502
Gtype  -> Air     0.300597
O      -> Strain  0.254321
Temp   -> O       0.216050
O      -> Temp    0.142158
O      -> pH      0.137855
Med    -> O       0.128554
O      -> Vess    0.115239
O      -> Phase   0.106649
Vess   -> O       0.054049
OD     -> O       0.018803
Vess   -> Temp    -0.000000
Agit   -> O       -0.000465
Strain -> pH      -0.003239
Strain -> OD      -0.006723
Med    -> Phase   -0.006863
Vess   -> Air     -0.007022
Temp   -> Phase   -0.008757
Strain -> Phase   -0.009809
Temp   -> Gversion -0.010618
Agit   -> Vess    -0.011877
Agit   -> OD      -0.011895
Anti   -> Substrain -0.012233
Temp   -> pH      -0.014480
Gtype  -> Strain  -0.015511
Substrain -> OD      -0.018691
Gversion -> Phase   -0.019033
Agit   -> Med     -0.019715
Substrain -> Med     -0.025227
OD     -> Gversion -0.028789
OD     -> Agit    -0.031958
Technique -> Strain  -0.032764
Temp   -> Anti    -0.036466
Med    -> Anti    -0.037148
Phase  -> Gversion -0.037489
Strain -> Air     -0.045187
Med    -> Agit    -0.045359
Gversion -> Agit    -0.049117
O      -> Agit    -0.052807
Med    -> Gversion -0.058509
O      -> OD      -0.059513
Gversion -> Anti    -0.059625
Supp   -> Substrain -0.060399
Strain -> Supp    -0.061240
Temp   -> Technique -0.061693
Substrain -> pH      -0.075018
Med    -> OD      -0.075117
pH     -> O       -0.078247
Gversion -> pH      -0.079201
Gtype  -> Vess    -0.084401
Agit   -> Gtype   -0.084433
Anti   -> Gversion -0.085513
Air    -> Anti    -0.086934
Air    -> Substrain -0.087320
Substrain -> Air     -0.092068
Supp   -> Vess    -0.100838
pH     -> Gtype   -0.101523
Supp   -> Agit    -0.103330
Substrain -> Supp    -0.104163
Phase  -> pH      -0.106934
pH     -> Gversion -0.110514
Agit   -> Supp    -0.110710
Gversion -> OD      -0.118720
pH     -> Med     -0.120765
Technique -> Substrain -0.124333
Temp   -> OD      -0.124803
Agit   -> Technique -0.126062
OD     -> pH      -0.126135
Med    -> pH      -0.135090
Strain -> Gtype   -0.137670
Gversion -> Temp    -0.140081
Temp   -> Supp    -0.140781
Gversion -> Med     -0.145001
Technique -> Phase   -0.149971
pH     -> OD      -0.158808
Air    -> Gversion -0.164962
OD     -> Gtype   -0.175005
Anti   -> OD      -0.177311
Technique -> Agit    -0.188545
Gtype  -> Agit    -0.190747
Phase  -> Temp    -0.199230
Air    -> pH      -0.199912
pH     -> Temp    -0.209132
Temp   -> Gtype   -0.215784
Technique -> Anti    -0.219246
Med    -> Gtype   -0.229252
Phase  -> Air     -0.229360
Med    -> Temp    -0.229826
OD     -> Med     -0.231274
Phase  -> Supp    -0.233064
Air    -> Gtype   -0.237201
Anti   -> Phase   -0.240820
Phase  -> Anti    -0.242672
pH     -> Agit    -0.243587
Technique -> Temp    -0.248417
Supp   -> Phase   -0.249152
pH     -> Supp    -0.251251
Anti   -> Air     -0.275725
Anti   -> Technique -0.277102
Supp   -> OD      -0.277243
pH     -> Air     -0.277588
Anti   -> O       -0.280521
Gversion -> Technique -0.288465
Gtype  -> Substrain -0.289466
O      -> Gversion -0.304553
Supp   -> Anti    -0.308215
Supp   -> pH      -0.309430
Gversion -> Supp    -0.315506
O      -> Anti    -0.317267
Supp   -> Gversion -0.332661
Med    -> Air     -0.341726
Air    -> Technique -0.342813
OD     -> Temp    -0.347426
Air    -> OD      -0.354488
Gversion -> Gtype   -0.358129
O      -> Substrain -0.358481
Supp   -> Technique -0.359119
Anti   -> pH      -0.370007
Phase  -> Gtype   -0.374882
OD     -> Supp    -0.391073
Supp   -> Temp    -0.398053
Agit   -> Air     -0.400839
Gversion -> Air     -0.427526
Supp   -> Air     -0.438001
Phase  -> O       -0.444083
Temp   -> Air     -0.446613
OD     -> Technique -0.447507
Supp   -> Gtype   -0.479558
Med    -> Technique -0.479633
Gtype  -> OD      -0.482386
Anti   -> Supp    -0.502669
Air    -> Supp    -0.521620
Phase  -> Med     -0.527222
Technique -> Supp    -0.530825
Air    -> Temp    -0.537302
Phase  -> OD      -0.553240
Technique -> Med     -0.554966
Anti   -> Med     -0.556415
Technique -> Gversion -0.576234
Gtype  -> Technique -0.578610
Gversion -> O       -0.596864
Anti   -> Gtype   -0.600891
Air    -> Med     -0.641550
Gtype  -> Gversion -0.653824
Air    -> Agit    -0.661881
Air    -> Phase   -0.662152
Gtype  -> Phase   -0.712276
Gtype  -> O       -0.804026
Phase  -> Technique -0.818321
O      -> Med     -0.832454
Temp   -> Med     -0.859780
Technique -> OD      -0.888604
Gtype  -> Temp    -0.918261
Gtype  -> Med     -0.933716
Anti   -> Temp    -0.941880
Gtype  -> Anti    -0.999302
Technique -> Gtype   -1.021174
OD     -> Air     -1.058773
Technique -> O       -1.118280
Substrain -> O       -1.293959
Supp   -> Med     -1.294484
O      -> Air     -1.377340
Med    -> Supp    -1.515948
Technique -> pH      -1.970735


Top positive:
7.601127 O        b'lemma:_'
4.968649 Gtype    b'lemma:wt'
4.795936 Supp     b'lemma:Iron'
4.646531 Air      b'lemma:anaerobic'
4.546241 Technique b'lemma:chipseq'
4.351194 Supp     b'lemma:pq'
4.024449 O        b'postag::'
3.720040 Supp     b'lemma:glucose'
3.714685 Supp     b'+1:lemma:\xc2\xb5m'
3.636802 Supp     b'lemma:2h'
3.636802 Supp     b'-1:lemma:additional'
3.624305 O        b'lemma:Cra'
3.611779 O        b'lemma:1'
3.476880 Gtype    b'-1:lemma:\xe2\x88\x86'
3.456206 Gversion b'lemma:asm584v2'
3.446107 Phase    b'lemma:mid-log'
3.441549 Supp     b'lemma:nh4cl'
3.382768 O        b'lemma:2'
3.353382 Gtype    b'lemma:arca8myc'
3.303617 Air      b'-1:lemma:ChIP-Seq'
3.295280 Gtype    b'lemma:type'
3.288915 Gtype    b'hGreek'
3.218286 O        b'lemma:-'
3.189034 Strain   b'lemma:k-12'
3.188263 Gtype    b'lemma:WT'
3.183318 O        b'lemma:b'
3.121309 O        b'-1:lemma:tag'
3.114315 Phase    b'lemma:stationary'
3.114315 Phase    b'lemma:exponential'
3.092875 Supp     b'lemma:no3'
3.092317 Technique b'lemma:ChIP-exo'
3.073860 Air      b'lemma:aerobic'
3.067656 Supp     b'-1:lemma:Cra'
3.061546 O        b'lemma:.'
3.061546 O        b'postag:.'
3.051701 O        b'lemma:rep2'
3.051701 O        b'lemma:rep1'
3.048984 O        b'postag:IN'
3.047152 O        b'lemma:chip-arca'
3.046160 Air      b'lemma:anaeroibc'
3.041373 Med      b'lemma:MOPS'
3.040542 Gtype    b'+1:lemma:type'
3.039856 Air      b'postag:RB'
3.006213 Supp     b'lemma:acetate'
2.999304 O        b'lemma:\xcf\x8332'
2.966186 Air      b'lemma:aerobically'
2.950905 Gversion b'lemma:chip-seq'
2.911696 O        b'lemma:CEL'
2.870779 O        b'lemma:chip-fnr'
2.864402 Air      b'-1:lemma:-'
2.860959 Gtype    b'lemma:\xe2\x88\x86'
2.845240 O        b'postag:VBG'
2.819161 Supp     b'lemma:rifampicin'
2.813124 O        b'lemma:genotype/variation'
2.803305 O        b'lemma:3'
2.764110 O        b'lemma:with'
2.721971 Gtype    b'lemma:fnr8myc'
2.712479 Supp     b'lemma:arginine'
2.704844 O        b'lemma:rpob'
2.701027 Supp     b'lemma:nacl'
2.678805 O        b'-1:lemma:0.3'
2.662039 Substrain b'lemma:mg1655'
2.601013 Vess     b'lemma:flask'
2.601013 Vess     b'-1:lemma:warm'
2.597713 Med      b'+1:lemma:0.4'
2.595720 Supp     b'+1:lemma:Deficient'
2.588000 Temp     b'+1:lemma:\xc2\xb0c'
2.541301 Temp     b'lemma:\xc2\xb0c'
2.536151 Technique b'-1:lemma:_'
2.518241 Gtype    b'lemma:pk4854'
2.517978 O        b'-1:lemma:glucose'
2.499582 O        b'+1:lemma:wt'
2.493845 Med      b'lemma:LB'
2.490635 pH       b'lemma:ph5'
2.490635 pH       b'+1:lemma:.5'
2.484940 Gtype    b'lemma:dfnr'
2.456547 O        b'lemma:a'
2.439236 Supp     b'lemma:Adenine'
2.437781 Supp     b'lemma:dpd'
2.434644 Substrain b'lemma:mg1655star'
2.433095 Gtype    b'lemma:delta-fnr'
2.419962 Air      b'+1:lemma:%'
2.391219 Supp     b'lemma:Fe'
2.388620 Anti     b'lemma:seqa'
2.374462 Technique b'lemma:rnaseq'
2.353482 Med      b'lemma:lb'
2.333144 Anti     b'lemma:none'
2.331165 Gtype    b'lemma:deltaseqa'
2.331165 Gtype    b'-1:lemma:old'
2.321899 O        b'+1:lemma:coli'
2.318849 Supp     b'lemma:Leu'
2.308778 Phase    b'-1:lemma:mid-log'
2.302736 Air      b'lemma:%'
2.292123 O        b'postag:CC'
2.278307 Supp     b'lemma:iptg'
2.272815 O        b'+1:lemma:pq'
2.268235 Temp     b'-1:lemma:37'
2.241286 O        b'-1:lemma:lb'
2.240256 O        b'+1:lemma:k-12'
2.238323 Supp     b'+1:lemma:1'
2.236626 Supp     b'-1:lemma:with'
2.218823 Temp     b'lemma:43'
2.209289 Gtype    b'-1:lemma:nsrr'
2.209289 Gtype    b'+1:lemma:flagtag'
2.203579 Anti     b'lemma:\xcf\x8332'
2.196398 pH       b'+1:postag:CD'
2.180468 Gtype    b'+1:postag::'
2.168579 O        b'postag:VBN'
2.158912 Technique b'hUpper'
2.153936 Supp     b'+1:lemma:2'
2.143047 Agit     b'+1:lemma:rpm'
2.142375 O        b'+1:lemma:od600'
2.092088 Med      b'-1:lemma:ml'
2.079373 Substrain b'+1:lemma:phtpg'
2.075631 Supp     b'+1:lemma:deficient'
2.074024 Med      b'lemma:minimal'
2.056439 O        b'+1:lemma:43'
2.041243 Supp     b'-1:lemma:+'
2.039301 Med      b'lemma:media'
2.033479 Temp     b'lemma:37'
2.027867 O        b'+1:postag:RB'
2.023475 Agit     b'-1:lemma:250'
2.022215 Agit     b'lemma:rpm'
2.020967 Air      b'-1:lemma:_'
2.016840 Gversion b'lemma:000913'
1.997588 O        b'lemma:affyexp'
1.992520 Gtype    b'-1:lemma:_'
1.987734 Gtype    b'lemma:wildtype'
1.986898 Air      b'lemma:Anaerobic'
1.982864 Vess     b'-1:postag:VBN'
1.976285 Strain   b'+1:lemma:substr'
1.971973 Phase    b'postag:NN'
1.969879 Air      b'-1:lemma:co2'
1.969661 O        b'+1:lemma:ph5'
1.962799 Gtype    b'lemma:crp'
1.954252 O        b'-1:lemma:anaerobic'
1.947442 Temp     b'-1:lemma:43'
1.934893 O        b'lemma:chip'
1.934096 O        b'lemma::'
1.929503 OD       b'lemma:od450'
1.928652 Agit     b'lemma:250'
1.917363 O        b'-1:postag:NNS'
1.916718 Supp     b'lemma:Trp'
1.896367 Supp     b'+1:lemma:mm'
1.885764 Supp     b'+1:lemma:iptg'
1.885146 Gtype    b'-1:lemma:ptac'
1.882664 Supp     b'+1:lemma:hour'
1.875860 Anti     b'+1:lemma:antibody'
1.869428 Med      b'lemma:medium'
1.856291 Gversion b'lemma:u00096'
1.856291 Gversion b'+1:lemma:.2'
1.840036 Gtype    b'lemma:delta-arca'
1.838746 Anti     b'-1:lemma::'
1.838646 Gversion b'-1:lemma:nc'
1.838646 Gversion b'+1:lemma:000913'
1.832944 Gtype    b'lemma:ptac'
1.820781 Gtype    b'hLower'
1.820587 Supp     b'-1:lemma:vol'
1.809561 O        b'-1:lemma:genotype/variation'
1.807064 O        b'-1:lemma:into'
1.795343 Gversion b'lemma:nc'
1.785427 Gtype    b'+1:lemma:_'
1.782912 Supp     b'-1:lemma:potassium'
1.782842 Med      b'symb'
1.781444 Gversion b'lemma:.2'
1.781444 Gversion b'-1:lemma:u00096'
1.779426 O        b'-1:lemma:no3'
1.764915 Vess     b'+1:lemma:at'
1.758006 Substrain b'-1:lemma:.'
1.758006 Substrain b'-1:postag:.'
1.754186 Gtype    b'+1:lemma:with'
1.753765 Gtype    b'+1:lemma:cra'
1.741880 Med      b'lemma:glucose'
1.740687 Technique b'+1:lemma:gadx'
1.738358 Gtype    b'-1:lemma:rpob'
1.732230 Air      b'-1:lemma:ryhb'
1.729700 Gtype    b'-1:lemma:wild'
1.727836 Technique b'hLower'
1.724753 Phase    b'lemma:phase'
1.722816 Gtype    b'+1:lemma:control'
1.721938 O        b'lemma:soxr'
1.721938 O        b'lemma:soxs'
1.718890 O        b'lemma:-rrb-'
1.718523 O        b'-1:lemma:ChIP-exo'
1.715972 Supp     b'lemma:fructose'
1.714460 Supp     b'-1:lemma:ompr'
1.712121 O        b'lemma:argr'
1.710788 Temp     b'-1:lemma:\xcf\x8332'
1.703303 Med      b'+1:lemma:2.0'
1.699870 O        b'lemma:s'
1.698151 Supp     b'+1:lemma:_'
1.696523 OD       b'+1:postag:IN'
1.695108 O        b'lemma:at'
1.691822 O        b'lemma:-lrb-'
1.690216 O        b'postag:DT'
1.682827 OD       b'lemma:od600'
1.681789 Gtype    b'lemma:\xce\xb4fur'
1.677521 Supp     b'lemma:leucine'
1.675578 O        b'symb'
1.674797 O        b'+1:lemma:wash'
1.672757 O        b'-1:lemma:-80'
1.669762 pH       b'+1:lemma:5.5'
1.667348 O        b'+1:lemma:\xe2\x88\x86'
1.667225 O        b'-1:lemma:type'
1.662500 Gtype    b'lemma:wild'
1.662165 Med      b'-1:lemma:fresh'
1.659735 O        b'-1:lemma:nh4cl'
1.656686 Med      b'lemma:m63'
1.635245 Anti     b'-1:lemma:fnr'
1.632883 Phase    b'-1:lemma:until'
1.628669 Supp     b'-1:lemma:without'
1.627701 Technique b'lemma:rna-seq'
1.622828 Technique b'+1:lemma:chip-exo'
1.609643 Med      b'+1:lemma:+'
1.608453 Gtype    b'lemma:nsrr'
1.603064 O        b'lemma:A'
1.601394 Air      b'-1:lemma:%'
1.600731 O        b'lemma:ompr'
1.594670 Med      b'-1:lemma:minimal'
1.587291 OD       b'lemma:0.3'
1.579003 Med      b'+1:lemma:-lrb-'
1.578494 Gversion b'+1:lemma:genome'
1.577605 O        b'lemma:-80'
1.574720 OD       b'-1:lemma:at'
1.571409 Technique b'lemma:ChIP-Seq'
1.564965 Med      b'-1:lemma:in'
1.564924 O        b'lemma:gadx'
1.564770 Technique b'-1:lemma:IP'
1.562312 Gtype    b'-1:lemma:Wild'
1.561478 Med      b'+1:postag:-LRB-'
1.555700 O        b'postag:-LRB-'
1.554633 Gversion b'postag:NN'
1.546896 O        b'lemma:purr'
1.545790 Temp     b'-1:lemma:sample'
1.545408 Strain   b'-1:lemma:.'
1.545408 Strain   b'-1:postag:.'
1.544943 Gtype    b'-1:lemma:from'
1.539801 O        b'-1:lemma:pq'
1.538327 OD       b'-1:lemma:od450'
1.519355 O        b'-1:lemma:stpa'
1.513100 Gtype    b'+1:lemma:pq'
1.511513 Med      b'+1:postag:CD'
1.510473 O        b'+1:lemma:250'
1.510001 O        b'lemma:culture'
1.509657 O        b'-1:lemma:Anaerobic'
1.508086 Air      b'-1:postag::'
1.507103 Anti     b'hGreek'
1.506713 O        b'-1:lemma:phase'
1.505108 Gtype    b'lemma:\xce\xb4cra'
1.503612 Gversion b'lemma:_'
1.497298 O        b'-1:lemma:Aerobic'
1.497062 Gversion b'postag:CD'
1.493158 Technique b'-1:lemma:input'
1.480832 O        b'lemma:or'
1.477492 O        b'postag:CD'
1.475719 Technique b'+1:lemma:rna-seq'
1.473923 Gtype    b'lemma:phtpg'
1.470832 O        b'-1:lemma:wt'
1.469624 Supp     b'-1:lemma:contain'
1.468992 Technique b'lemma:chip-exo'
1.460360 pH       b'lemma:ph'
1.447916 O        b'-1:lemma:\xc2\xb0c'
1.442825 Gtype    b'-1:lemma:phtpg'
1.441587 O        b'lemma:Lrp'
1.431752 Technique b'-1:lemma:rna-seq'
1.431739 Supp     b'lemma:1m'
1.428963 O        b'+1:lemma:0.2'
1.427425 O        b'lemma:harbor'
1.419613 OD       b'-1:lemma:~'
1.412184 O        b'+1:postag::'
1.410847 O        b'lemma:C'
1.408214 Med      b'postag:NNP'
1.406880 pH       b'-1:lemma:at'
1.406806 OD       b'-1:postag:IN'
1.404135 O        b'+1:lemma:30'
1.398414 Supp     b'-1:lemma:respiration'
1.398414 Supp     b'+1:lemma:mmol'
1.397109 O        b'+1:lemma:20'
1.395852 Air      b'postag:JJ'
1.393629 Supp     b'+1:lemma:leucine'
1.393414 Technique b'-1:lemma:chip-exo'
1.388558 Supp     b'-1:postag:CC'
1.385121 O        b'+1:lemma:sparging'
1.383455 Med      b'+1:lemma:minimal'
1.378778 Technique b'-1:lemma:1'
1.366426 O        b'+1:lemma:fnr-8myc'
1.365534 Air      b'lemma:Aerobic'
1.363968 Gtype    b'-1:postag:VBP'
1.363195 Supp     b'-1:lemma:30'
1.362863 O        b'postag:SYM'
1.362733 O        b'-1:lemma:mg1655'
1.361194 O        b'-1:lemma:.5'
1.357658 pH       b'lemma:.5'
1.357658 pH       b'-1:lemma:ph5'
1.354602 Air      b'hLower'
1.347828 O        b'-1:lemma:min'
1.341878 pH       b'lemma:5.5'
1.341876 O        b'-1:lemma:nacl'
1.338026 OD       b'+1:lemma:of'
1.330564 O        b'postag:-RRB-'
1.328377 O        b'lemma:for'
1.328200 O        b'-1:lemma:acetate'
1.322235 Supp     b'lemma:tryptophan'
1.322235 Supp     b'-1:lemma:mg/l'
1.320803 Gtype    b'lemma:Wild'
1.320512 Supp     b'-1:lemma:\xc2\xb5m'
1.318897 O        b'lemma:E.'
1.318297 O        b'-1:lemma:arginine'
1.315783 O        b'lemma:c'
1.307978 Anti     b'-1:lemma:myc'
1.307578 Supp     b'lemma:30'
1.302010 Gtype    b'-1:lemma:factor'
1.298638 O        b'-1:lemma:shake'
1.297774 Gtype    b'hUpper'
1.296029 O        b'lemma:,'
1.296029 O        b'postag:,'
1.294130 Supp     b'-1:lemma:\xce\xb4cra'
1.292514 O        b'-1:lemma:grow'
1.291252 Phase    b'-1:lemma::'
1.288746 Substrain b'postag:NN'
1.288273 Supp     b'-1:lemma:sodium'
1.287081 Anti     b'lemma:anti-rpos'
1.286653 Supp     b'lemma:glutamine'
1.286653 Supp     b'-1:lemma:2g/l'
1.282041 Technique b'+1:postag:NN'
1.281798 Vess     b'+1:postag:IN'
1.281485 O        b'lemma:input'
1.281485 O        b'+1:lemma:chip-seq'
1.279518 Gtype    b'lemma:wild-type'
1.261930 O        b'lemma:ml'
1.260950 Air      b'+1:lemma:at'
1.256985 OD       b'+1:lemma:,'
1.256985 OD       b'+1:postag:,'
1.249776 Supp     b'-1:lemma:mm'
1.249070 O        b'lemma:k-12'
1.245057 Anti     b'lemma:anti-rpob'
1.241697 Gtype    b'lemma:flagtag'
1.240522 O        b'lemma:oxyr'
1.234180 O        b'+1:lemma:aerobically'
1.229005 O        b'lemma:Genome'
1.228934 O        b'-1:lemma:l1'
1.226677 Med      b'+1:lemma:medium'
1.224395 Med      b'postag:NNS'
1.219250 pH       b'-1:lemma:ph'
1.217390 Anti     b'+1:lemma:-lrb-'
1.214920 Temp     b'lemma:sample'
1.213773 O        b'-1:lemma:aerobic'
1.212795 Gtype    b'-1:lemma::'
1.206713 O        b'+1:postag:VBN'
1.206604 O        b'postag:NNS'
1.203140 Supp     b'+1:lemma:min'
1.196026 O        b'lemma:~'
1.193265 pH       b'-1:postag:NN'
1.188923 O        b'-1:lemma:media'
1.184923 O        b'lemma:2-3'
1.184081 O        b'+1:lemma:or'
1.178422 O        b'lemma:trpr'
1.175505 O        b'+1:lemma:acetate'
1.174797 Supp     b'+1:lemma:1/100'
1.173642 O        b'+1:postag:VBZ'
1.173041 O        b'+1:lemma:m9'
1.167117 O        b'lemma:agitation'
1.164401 Supp     b'lemma:0.2'
1.161237 Gtype    b'-1:postag:VBG'
1.159709 O        b'hLower'
1.158284 Anti     b'+1:postag:-LRB-'
1.158249 O        b'lemma:+'
1.156074 Air      b'+1:lemma:5'
1.152664 O        b'-1:lemma:induce'
1.149663 Technique b'lemma:chip-seq'
1.147091 Gversion b'-1:lemma:the'
1.143792 Med      b'+1:lemma:supplement'
1.138134 Supp     b'-1:lemma:0.2'
1.135482 Supp     b'+1:lemma:phosphate'
1.134016 Med      b'+1:lemma:with'
1.132575 O        b'+1:lemma:nacl'
1.132504 O        b'lemma:%'
1.132400 Supp     b'-1:lemma:soxr'
1.132400 Supp     b'-1:lemma:soxs'
1.127676 O        b'+1:lemma:mid-log'
1.127312 O        b'-1:postag:RB'
1.126058 Supp     b'-1:lemma:\xce\xb4ompr'
1.123534 O        b'+1:postag:NNP'
1.120913 Anti     b'-1:postag:JJ'
1.120634 Supp     b'lemma:nitrate'
1.120533 Gtype    b'+1:lemma:the'
1.115862 Gtype    b'-1:lemma:vector'
1.114805 Air      b'-1:lemma:phase'
1.113684 Supp     b'+1:lemma:1m'
1.110499 Med      b'-1:lemma:LB'
1.109829 Anti     b'lemma:anti-flag'
1.109829 Anti     b'+1:lemma:mab'
1.107042 O        b'-1:lemma:nitrate'
1.105780 Anti     b'-1:postag::'
1.093534 Gtype    b'lemma:cra'
1.089997 Supp     b'-1:lemma:2'
1.088991 Supp     b'-1:lemma:phosphate'
1.087895 Gtype    b'+1:lemma::'
1.083584 Anti     b'lemma:tag'
1.079789 Anti     b'lemma:mab'
1.079789 Anti     b'-1:lemma:anti-flag'
1.078551 Temp     b'+1:lemma:and'
1.075153 Supp     b'lemma:sodium'
1.068513 Air      b'+1:lemma:b'
1.066593 Supp     b'-1:lemma:final'
1.065059 Technique b'postag:NNP'
1.064749 Med      b'+1:lemma:g/l'
1.063734 Air      b'+1:lemma:co2'
1.058104 Supp     b'lemma:20'
1.057095 O        b'-1:lemma:4'
1.056752 OD       b'lemma:of'
1.054339 Air      b'lemma:co2'
1.053632 Gtype    b'+1:lemma:mg1655'
1.049599 Air      b'+1:lemma:or'
1.047981 O        b'lemma:cra'
1.046734 O        b'lemma:to'
1.046734 O        b'postag:TO'
1.043138 O        b'-1:lemma:fructose'
1.042705 Gtype    b'lemma:the'
1.040569 Agit     b'-1:lemma:-lrb-'
1.037841 Temp     b'+1:lemma:short'
1.037489 O        b'lemma:EB'
1.034795 Supp     b'symb'
1.034794 Supp     b'-1:lemma:m'
1.034710 Supp     b'+1:lemma:anaerobically'
1.033997 Supp     b'-1:lemma:cra'
1.033783 Supp     b'lemma:cm20'
1.033783 Supp     b'-1:lemma:\xc2\xb5l'
1.032275 O        b'+1:lemma:read'
1.029074 Supp     b'lemma:\xc2\xb5m'
1.028595 O        b'lemma:respiration'
1.027922 Supp     b'-1:postag:CD'
1.026258 OD       b'postag:IN'
1.025990 Anti     b'+1:postag:NN'
1.025837 Gversion b'-1:postag:DT'
1.022699 Anti     b'+1:lemma:from'
1.022530 O        b'lemma:Nac'
1.020017 O        b'+1:lemma:fructose'
1.019421 Supp     b'-1:lemma:1m'
1.018096 O        b'lemma:genotype'
1.016191 O        b'+1:lemma:tritonx-100'
1.011453 O        b'lemma:\xc2\xb0c'
1.011027 O        b'lemma:delta'
1.007176 Supp     b'+1:lemma:be'
1.005834 O        b'lemma:growth'
1.003474 Phase    b'+1:lemma:culture'
1.002697 O        b'lemma:IP'
1.001605 OD       b'+1:postag:JJ'
1.001557 O        b'lemma:additional'
1.001557 O        b'+1:lemma:2h'
0.995957 Supp     b'postag:NNP'
0.994450 Phase    b'+1:lemma:phase'
0.994225 O        b'-1:lemma:one'
0.994182 Gtype    b'-1:lemma:knock-out'
0.992049 OD       b'+1:lemma:0.3'
0.990664 Air      b'-1:lemma:5'
0.989237 Supp     b'-1:lemma:0.3'
0.987644 Temp     b'+1:postag:JJ'
0.986106 Air      b'-1:postag:NN'
0.983232 O        b'lemma:contain'
0.980942 Med      b'-1:lemma:glucose'
0.980906 Gtype    b'+1:lemma:small'
0.979783 Anti     b'-1:lemma:monoclonal'
0.978250 Gtype    b'lemma:fur-8myc'
0.978250 Gtype    b'lemma:cra-8myc-tagged'
0.973043 Supp     b'lemma:methanol'
0.972985 Agit     b'+1:postag:-RRB-'
0.970763 Supp     b'lemma:2g/l'
0.970763 Supp     b'+1:lemma:glutamine'
0.970059 O        b'-1:lemma:medium'
0.969743 Agit     b'+1:lemma:-rrb-'
0.969582 Supp     b'lemma:feso4'
0.969567 Air      b'+1:lemma:n2'
0.969127 O        b'lemma:Fur'
0.969052 Anti     b'lemma:anti-myc'
0.968815 Gtype    b'+1:lemma:ph5'
0.953760 O        b'lemma:0.4'
0.951392 Med      b'-1:postag:JJ'
0.951227 pH       b'+1:lemma:.'
0.951227 pH       b'+1:postag:.'
0.951221 Temp     b'+1:lemma:in'
0.951058 O        b'+1:lemma:dpd'
0.949999 Gversion b'-1:lemma::'
0.946399 O        b'-1:lemma:or'
0.946384 Gtype    b'+1:lemma:knock-out'
0.946346 Gtype    b'-1:postag:IN'
0.944402 O        b'lemma:one'
0.943963 OD       b'lemma:o.d.'
0.943963 OD       b'+1:lemma:600nm'
0.942219 Gversion b'+1:postag:CD'
0.939754 Air      b'+1:lemma:95'
0.939336 Med      b'lemma:g/l'
0.936346 Gtype    b'postag:JJ'
0.935256 Supp     b'lemma:final'
0.932561 O        b'+1:lemma:minute'
0.927218 Air      b'-1:postag:CD'
0.924601 O        b'+1:lemma:to'
0.924601 O        b'+1:postag:TO'
0.923817 Temp     b'+1:postag:CC'
0.923394 Gtype    b'lemma:factor'


Top negative:
0.035650 O        b'lemma:without'
0.035417 O        b'-1:lemma:kcl'
0.035196 Technique b'+1:lemma:_'
0.034253 Gtype    b'lemma:rpoh'
0.034046 O        b'+1:lemma:a'
0.033689 O        b'lemma:.0.0'
0.033689 O        b'-1:lemma:v1'
0.033216 O        b'lemma:pre-cleared'
0.033160 O        b'+1:lemma:into'
0.033079 O        b'lemma:-lsb-'
0.032997 Gtype    b'+1:postag:-RRB-'
0.032925 O        b'-1:lemma:early-log'
0.032664 O        b'lemma:no'
0.032419 O        b'lemma:slurry'
0.032419 O        b'-1:lemma:50/50'
0.032366 Supp     b'lemma:um'
0.032130 O        b'-1:lemma:allow'
0.031833 Air      b'+1:lemma:culture'
0.031729 O        b'-1:lemma:volume'
0.031304 Gtype    b'lemma:stpa'
0.031256 O        b'-1:lemma:,1.2'
0.031256 O        b'+1:lemma:kcl'
0.031048 O        b'-1:lemma:\xce\xbcl'
0.030307 O        b'lemma:incubation'
0.029534 O        b'+1:lemma:o2'
0.029084 O        b'-1:lemma:w/v'
0.028831 O        b'lemma:statistically'
0.028831 O        b'+1:lemma:significant'
0.028267 O        b'lemma:6'
0.028149 Supp     b'+1:postag:NN'
0.026927 Gversion b'symb'
0.026440 O        b'-1:lemma:protein-dna'
0.026392 O        b'lemma:e.g.'
0.024671 O        b'+1:lemma:ompr'
0.024614 O        b'lemma:phosphate'
0.023873 O        b'-1:lemma:tritonx-100'
0.022971 Supp     b'lemma:vol'
0.022971 Supp     b'-1:lemma:1/100'
0.022609 O        b'-1:lemma:od600'
0.022310 O        b'+1:lemma:\xce\xb4seqa'
0.021531 Supp     b'+1:lemma:10'
0.021347 O        b'+1:lemma:gade-8myc'
0.018903 Phase    b'+1:postag:NN'
0.018509 Supp     b'-1:lemma:10'
0.018452 O        b'lemma:harvest'
0.018437 O        b'-1:lemma:agitation'
0.018186 O        b'-1:lemma:0.1'
0.017148 O        b'-1:lemma:gene'
0.017066 O        b'lemma:mixture'
0.016956 O        b'lemma:fur-8-myc'
0.016779 O        b'+1:lemma:inoculate'
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0.016399 O        b'+1:postag:JJR'
0.016311 Gtype    b'postag:VBP'
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0.015175 O        b'lemma:nuclease'
0.015175 O        b'-1:lemma:micrococcal'
0.015104 O        b'+1:lemma:ompr-8myc'
0.013035 O        b'lemma:site-specific'
0.013035 O        b'-1:lemma:flp-mediated'
0.013035 O        b'+1:lemma:recombination'
0.012653 O        b'lemma:source'
0.012575 O        b'-1:lemma:-'
0.012530 O        b'-1:lemma:add'
0.012410 O        b'lemma:bp'
0.012113 pH       b'hUpper'
0.011984 O        b'+1:lemma:bp'
0.011510 O        b'+1:lemma:WT'
0.010318 O        b'-1:lemma:70'
0.009056 O        b"lemma:'s"
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0.009056 O        b'+1:lemma:pcr'
0.008809 O        b'-1:lemma:m9'
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0.007151 O        b'-1:lemma:acid'
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0.003158 O        b'+1:lemma:x'
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0.002375 O        b'-1:lemma:argr'
0.002323 O        b'+1:lemma:concentration'
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0.001025 O        b'-1:lemma:soxr-8myc'
0.001025 O        b'-1:lemma:soxs-8myc'
0.001008 O        b'lemma:lysate'
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0.000010 Supp     b'+1:lemma:media'
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-2.154517 Air      b'postag:NN'
-2.256804 Technique b'symb'
-2.271015 O        b'lemma:aerobically'
-2.410628 Phase    b'hUpper'
-3.137059 O        b'-1:lemma:_'
-3.421494 O        b'-1:lemma::'