********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.005432057124348888, 'c2': 0.08215827950958553}
best CV score:0.8222652765189232
model size: 0.21M

Flat F1: 0.808232584194055
             precision    recall  f1-score   support

         OD      1.000     1.000     1.000        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.804     0.891        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      0.000     0.000     0.000         7
      Phase      1.000     0.762     0.865        21
        Air      0.590     0.557     0.573        88
       Anti      0.692     0.692     0.692        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.925     0.795     0.855        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.877     0.838     0.857       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.852     0.773     0.808       484


Top likely transitions:
Supp   -> Supp    4.488626
Med    -> Med     4.459518
Air    -> Air     4.198909
Temp   -> Temp    4.036693
Anti   -> Anti    3.914136
Phase  -> Phase   3.616436
Gtype  -> Gtype   3.384002
OD     -> OD      3.291042
O      -> O       3.139540
Gversion -> Gversion 2.807538
Technique -> Technique 2.788988
pH     -> pH      2.275082
Agit   -> Agit    1.573735
Technique -> Air     1.172409
Substrain -> Gtype   1.051087
Air    -> O       0.629854
Gtype  -> Supp    0.622177
O      -> Technique 0.510958
Gtype  -> pH      0.404478
O      -> Supp    0.368753
O      -> Vess    0.266361
Gtype  -> Air     0.258209
Vess   -> O       0.251845
Strain -> O       0.220396
O      -> Substrain 0.212073
Phase  -> Air     0.102460
O      -> Gtype   0.092677
O      -> pH      0.030958
O      -> Strain  0.027782
Vess   -> Temp    -0.000000
Anti   -> Substrain -0.000002
Strain -> Anti    -0.000002
Anti   -> Vess    -0.000091
Phase  -> Strain  -0.000304
Agit   -> Anti    -0.000385
OD     -> Strain  -0.000696
Phase  -> Substrain -0.001006
Strain -> Med     -0.001045
Substrain -> Air     -0.001495
Strain -> Technique -0.001632
Vess   -> OD      -0.004005
Agit   -> Vess    -0.005939
Phase  -> Agit    -0.007188
Agit   -> Gversion -0.008477
Air    -> Strain  -0.009420
Gversion -> Phase   -0.009476
Substrain -> Med     -0.009929
Temp   -> Agit    -0.016133
Agit   -> pH      -0.016941
Air    -> Substrain -0.017041
Anti   -> Agit    -0.018710
Substrain -> Technique -0.018806
pH     -> Phase   -0.020125
Temp   -> O       -0.021074
Temp   -> pH      -0.023578
pH     -> Anti    -0.025739
Strain -> pH      -0.025950
Technique -> Substrain -0.027569
Substrain -> OD      -0.032191
Vess   -> Gtype   -0.033062
Supp   -> Strain  -0.033078
Technique -> Strain  -0.033247
Agit   -> Temp    -0.034693
Strain -> OD      -0.035955
Supp   -> Substrain -0.036208
pH     -> Med     -0.037399
Med    -> Phase   -0.038281
pH     -> Agit    -0.039880
Substrain -> pH      -0.040512
OD     -> Phase   -0.044038
Vess   -> Supp    -0.045250
pH     -> Technique -0.045344
Agit   -> Med     -0.045565
Supp   -> Vess    -0.050277
Technique -> Phase   -0.050847
Supp   -> Air     -0.054147
Temp   -> Phase   -0.055055
Air    -> pH      -0.060538
OD     -> Anti    -0.069394
Air    -> Anti    -0.072805
Temp   -> Gversion -0.076810
Temp   -> Anti    -0.079236
Anti   -> Gversion -0.079970
Med    -> Agit    -0.081257
O      -> Agit    -0.081400
Gtype  -> Vess    -0.084059
Med    -> Anti    -0.084560
pH     -> Air     -0.087865
Gversion -> Med     -0.088324
Strain -> Supp    -0.088438
Gversion -> Agit    -0.089122
O      -> Temp    -0.093596
Anti   -> Air     -0.094121
pH     -> Temp    -0.097771
Phase  -> Gversion -0.099206
Gversion -> Anti    -0.100503
Phase  -> pH      -0.103898
Gversion -> Temp    -0.108974
Agit   -> Gtype   -0.111329
Med    -> Gversion -0.111564
Gtype  -> Strain  -0.115609
Substrain -> Supp    -0.115745
Anti   -> pH      -0.119935
pH     -> Gversion -0.121002
OD     -> Agit    -0.124595
Med    -> pH      -0.127580
Temp   -> Technique -0.130802
Technique -> Anti    -0.132394
Agit   -> OD      -0.132675
OD     -> pH      -0.133207
Gversion -> pH      -0.140507
OD     -> Gversion -0.140876
Air    -> Gversion -0.143715
Gtype  -> Substrain -0.154550
Technique -> Agit    -0.154981
Supp   -> Agit    -0.156606
Temp   -> Air     -0.159539
Supp   -> O       -0.163822
Technique -> Med     -0.166419
Agit   -> Technique -0.167637
O      -> Phase   -0.169203
pH     -> OD      -0.170948
Gtype  -> Agit    -0.172166
Temp   -> OD      -0.172872
pH     -> Gtype   -0.178115
Phase  -> Anti    -0.184807
Technique -> Temp    -0.191533
Med    -> Air     -0.195493
Agit   -> Supp    -0.197827
pH     -> O       -0.207043
Anti   -> Phase   -0.209168
Anti   -> Technique -0.218356
Anti   -> O       -0.221485
Air    -> Gtype   -0.222650
Med    -> OD      -0.222788
Gversion -> Air     -0.233823
Anti   -> OD      -0.236620
Air    -> Technique -0.253680
Air    -> Med     -0.254345
Technique -> O       -0.261394
Gversion -> OD      -0.263846
pH     -> Supp    -0.266370
Med    -> Technique -0.269675
Agit   -> Air     -0.270106
Temp   -> Supp    -0.276083
Strain -> Gtype   -0.276337
Med    -> Temp    -0.280672
Phase  -> Med     -0.286060
Temp   -> Gtype   -0.286225
OD     -> Med     -0.289227
Supp   -> pH      -0.290667
Technique -> Gversion -0.294722
Gversion -> Technique -0.295140
Phase  -> Temp    -0.299053
Supp   -> Technique -0.315282
Agit   -> O       -0.318865
Anti   -> Temp    -0.324956
Gversion -> Gtype   -0.329111
Technique -> Supp    -0.330846
Med    -> Gtype   -0.338005
Supp   -> Anti    -0.338894
Supp   -> Phase   -0.343664
Air    -> OD      -0.344081
OD     -> Gtype   -0.346187
Anti   -> Med     -0.347549
Anti   -> Supp    -0.352388
OD     -> Technique -0.358284
Phase  -> Gtype   -0.374865
Temp   -> Med     -0.391333
Air    -> Temp    -0.402216
Gtype  -> Temp    -0.403621
Phase  -> Supp    -0.420292
Gversion -> Supp    -0.422373
Supp   -> Gversion -0.426191
Air    -> Supp    -0.430325
Phase  -> O       -0.433771
Supp   -> Temp    -0.434178
OD     -> Temp    -0.435243
Anti   -> Gtype   -0.454330
Supp   -> OD      -0.482203
Phase  -> Technique -0.486399
Air    -> Phase   -0.490309
Air    -> Agit    -0.491800
OD     -> Supp    -0.530997
Gtype  -> Phase   -0.538535
Med    -> O       -0.575359
O      -> Anti    -0.599335
Supp   -> Gtype   -0.612376
Technique -> OD      -0.650289
Gtype  -> Technique -0.651910
Gtype  -> Gversion -0.679345
O      -> Gversion -0.683123
Gtype  -> Med     -0.692385
Gtype  -> OD      -0.696576
OD     -> Air     -0.735460
O      -> OD      -0.776594
OD     -> O       -0.840282
Gversion -> O       -0.845059
Phase  -> OD      -0.850931
O      -> Med     -0.905381
Gtype  -> Anti    -0.926419
Substrain -> O       -0.963882
Supp   -> Med     -0.988495
Technique -> Gtype   -1.033772
Technique -> pH      -1.076116
O      -> Air     -1.128757
Gtype  -> O       -1.141196
Med    -> Supp    -1.508381


Top unlikely transitions:
Supp   -> Supp    4.488626
Med    -> Med     4.459518
Air    -> Air     4.198909
Temp   -> Temp    4.036693
Anti   -> Anti    3.914136
Phase  -> Phase   3.616436
Gtype  -> Gtype   3.384002
OD     -> OD      3.291042
O      -> O       3.139540
Gversion -> Gversion 2.807538
Technique -> Technique 2.788988
pH     -> pH      2.275082
Agit   -> Agit    1.573735
Technique -> Air     1.172409
Substrain -> Gtype   1.051087
Air    -> O       0.629854
Gtype  -> Supp    0.622177
O      -> Technique 0.510958
Gtype  -> pH      0.404478
O      -> Supp    0.368753
O      -> Vess    0.266361
Gtype  -> Air     0.258209
Vess   -> O       0.251845
Strain -> O       0.220396
O      -> Substrain 0.212073
Phase  -> Air     0.102460
O      -> Gtype   0.092677
O      -> pH      0.030958
O      -> Strain  0.027782
Vess   -> Temp    -0.000000
Anti   -> Substrain -0.000002
Strain -> Anti    -0.000002
Anti   -> Vess    -0.000091
Phase  -> Strain  -0.000304
Agit   -> Anti    -0.000385
OD     -> Strain  -0.000696
Phase  -> Substrain -0.001006
Strain -> Med     -0.001045
Substrain -> Air     -0.001495
Strain -> Technique -0.001632
Vess   -> OD      -0.004005
Agit   -> Vess    -0.005939
Phase  -> Agit    -0.007188
Agit   -> Gversion -0.008477
Air    -> Strain  -0.009420
Gversion -> Phase   -0.009476
Substrain -> Med     -0.009929
Temp   -> Agit    -0.016133
Agit   -> pH      -0.016941
Air    -> Substrain -0.017041
Anti   -> Agit    -0.018710
Substrain -> Technique -0.018806
pH     -> Phase   -0.020125
Temp   -> O       -0.021074
Temp   -> pH      -0.023578
pH     -> Anti    -0.025739
Strain -> pH      -0.025950
Technique -> Substrain -0.027569
Substrain -> OD      -0.032191
Vess   -> Gtype   -0.033062
Supp   -> Strain  -0.033078
Technique -> Strain  -0.033247
Agit   -> Temp    -0.034693
Strain -> OD      -0.035955
Supp   -> Substrain -0.036208
pH     -> Med     -0.037399
Med    -> Phase   -0.038281
pH     -> Agit    -0.039880
Substrain -> pH      -0.040512
OD     -> Phase   -0.044038
Vess   -> Supp    -0.045250
pH     -> Technique -0.045344
Agit   -> Med     -0.045565
Supp   -> Vess    -0.050277
Technique -> Phase   -0.050847
Supp   -> Air     -0.054147
Temp   -> Phase   -0.055055
Air    -> pH      -0.060538
OD     -> Anti    -0.069394
Air    -> Anti    -0.072805
Temp   -> Gversion -0.076810
Temp   -> Anti    -0.079236
Anti   -> Gversion -0.079970
Med    -> Agit    -0.081257
O      -> Agit    -0.081400
Gtype  -> Vess    -0.084059
Med    -> Anti    -0.084560
pH     -> Air     -0.087865
Gversion -> Med     -0.088324
Strain -> Supp    -0.088438
Gversion -> Agit    -0.089122
O      -> Temp    -0.093596
Anti   -> Air     -0.094121
pH     -> Temp    -0.097771
Phase  -> Gversion -0.099206
Gversion -> Anti    -0.100503
Phase  -> pH      -0.103898
Gversion -> Temp    -0.108974
Agit   -> Gtype   -0.111329
Med    -> Gversion -0.111564
Gtype  -> Strain  -0.115609
Substrain -> Supp    -0.115745
Anti   -> pH      -0.119935
pH     -> Gversion -0.121002
OD     -> Agit    -0.124595
Med    -> pH      -0.127580
Temp   -> Technique -0.130802
Technique -> Anti    -0.132394
Agit   -> OD      -0.132675
OD     -> pH      -0.133207
Gversion -> pH      -0.140507
OD     -> Gversion -0.140876
Air    -> Gversion -0.143715
Gtype  -> Substrain -0.154550
Technique -> Agit    -0.154981
Supp   -> Agit    -0.156606
Temp   -> Air     -0.159539
Supp   -> O       -0.163822
Technique -> Med     -0.166419
Agit   -> Technique -0.167637
O      -> Phase   -0.169203
pH     -> OD      -0.170948
Gtype  -> Agit    -0.172166
Temp   -> OD      -0.172872
pH     -> Gtype   -0.178115
Phase  -> Anti    -0.184807
Technique -> Temp    -0.191533
Med    -> Air     -0.195493
Agit   -> Supp    -0.197827
pH     -> O       -0.207043
Anti   -> Phase   -0.209168
Anti   -> Technique -0.218356
Anti   -> O       -0.221485
Air    -> Gtype   -0.222650
Med    -> OD      -0.222788
Gversion -> Air     -0.233823
Anti   -> OD      -0.236620
Air    -> Technique -0.253680
Air    -> Med     -0.254345
Technique -> O       -0.261394
Gversion -> OD      -0.263846
pH     -> Supp    -0.266370
Med    -> Technique -0.269675
Agit   -> Air     -0.270106
Temp   -> Supp    -0.276083
Strain -> Gtype   -0.276337
Med    -> Temp    -0.280672
Phase  -> Med     -0.286060
Temp   -> Gtype   -0.286225
OD     -> Med     -0.289227
Supp   -> pH      -0.290667
Technique -> Gversion -0.294722
Gversion -> Technique -0.295140
Phase  -> Temp    -0.299053
Supp   -> Technique -0.315282
Agit   -> O       -0.318865
Anti   -> Temp    -0.324956
Gversion -> Gtype   -0.329111
Technique -> Supp    -0.330846
Med    -> Gtype   -0.338005
Supp   -> Anti    -0.338894
Supp   -> Phase   -0.343664
Air    -> OD      -0.344081
OD     -> Gtype   -0.346187
Anti   -> Med     -0.347549
Anti   -> Supp    -0.352388
OD     -> Technique -0.358284
Phase  -> Gtype   -0.374865
Temp   -> Med     -0.391333
Air    -> Temp    -0.402216
Gtype  -> Temp    -0.403621
Phase  -> Supp    -0.420292
Gversion -> Supp    -0.422373
Supp   -> Gversion -0.426191
Air    -> Supp    -0.430325
Phase  -> O       -0.433771
Supp   -> Temp    -0.434178
OD     -> Temp    -0.435243
Anti   -> Gtype   -0.454330
Supp   -> OD      -0.482203
Phase  -> Technique -0.486399
Air    -> Phase   -0.490309
Air    -> Agit    -0.491800
OD     -> Supp    -0.530997
Gtype  -> Phase   -0.538535
Med    -> O       -0.575359
O      -> Anti    -0.599335
Supp   -> Gtype   -0.612376
Technique -> OD      -0.650289
Gtype  -> Technique -0.651910
Gtype  -> Gversion -0.679345
O      -> Gversion -0.683123
Gtype  -> Med     -0.692385
Gtype  -> OD      -0.696576
OD     -> Air     -0.735460
O      -> OD      -0.776594
OD     -> O       -0.840282
Gversion -> O       -0.845059
Phase  -> OD      -0.850931
O      -> Med     -0.905381
Gtype  -> Anti    -0.926419
Substrain -> O       -0.963882
Supp   -> Med     -0.988495
Technique -> Gtype   -1.033772
Technique -> pH      -1.076116
O      -> Air     -1.128757
Gtype  -> O       -1.141196
Med    -> Supp    -1.508381


Top positive:
3.645048 O        b'lemma:_'
3.645048 O        b'word:_'
3.032351 Air      b'lemma:anaerobic'
3.004420 Gtype    b'word:WT'
2.832487 O        b'word:Cra'
2.791649 Technique b'word:ChIP-exo'
2.742006 Phase    b'lemma:mid-log'
2.742006 Phase    b'word:mid-log'
2.577555 Supp     b'lemma:Iron'
2.577555 Supp     b'word:Iron'
2.577555 Supp     b'+1:word:Deficient'
2.512231 Air      b'postag:RB'
2.491477 Supp     b'-1:ner:SUPP'
2.439420 Technique b'word:ChIPSeq'
2.432376 Med      b'word:LB'
2.412948 Technique b'lemma:chipseq'
2.321071 Supp     b'lemma:2h'
2.321071 Supp     b'-1:lemma:additional'
2.321071 Supp     b'word:2h'
2.321071 Supp     b'-1:word:additional'
2.320136 Supp     b'lemma:pq'
2.320136 Supp     b'word:PQ'
2.300437 Strain   b'lemma:k-12'
2.300437 Strain   b'word:K-12'
2.279412 Gtype    b'lemma:wt'
2.271867 Technique b'word:ChIP-Seq'
2.238183 Air      b'word:Aerobic'
2.210728 Phase    b'lemma:stationary'
2.210728 Phase    b'word:stationary'
2.210728 Phase    b'lemma:exponential'
2.210728 Phase    b'word:exponential'
2.170237 Technique b'lemma:ChIP-exo'
2.154318 Air      b'word:Anaerobic'
2.143259 Gtype    b'-1:ner:GEN'
2.080757 Supp     b'lemma:nh4cl'
2.058404 Supp     b'+1:lemma:\xc2\xb5m'
2.058404 Supp     b'+1:word:\xc2\xb5M'
2.047652 Gtype    b'lemma:\xce\xb4cra'
2.045198 Air      b'word:anaerobic'
2.037550 Gtype    b'word:\xce\x94cra'
2.035021 O        b'postag::'
1.997734 O        b'lemma:1'
1.997734 O        b'word:1'
1.997455 O        b'lemma:.'
1.997455 O        b'postag:.'
1.997455 O        b'word:.'
1.997101 Air      b'lemma:aerobically'
1.997101 Air      b'word:aerobically'
1.988244 Air      b'postag:JJ'
1.954818 Supp     b'lemma:no3'
1.954818 Supp     b'word:NO3'
1.946128 O        b'postag:VBG'
1.942560 Technique b'lemma:rna-seq'
1.934175 O        b'lemma:-'
1.934175 O        b'word:-'
1.933165 Gtype    b'lemma:\xce\xb4fur'
1.933165 Gtype    b'word:\xce\x94fur'
1.916739 O        b'-1:word:tag'
1.915055 Gversion b'lemma:asm584v2'
1.915055 Gversion b'word:ASM584v2'
1.914617 O        b'lemma:2'
1.914617 O        b'word:2'
1.885763 O        b'lemma:Cra'
1.865872 O        b'-1:lemma:tag'
1.858460 O        b'lemma:b'
1.858460 O        b'word:B'
1.837931 Air      b'-1:lemma:ChIP-Seq'
1.837931 Air      b'-1:word:ChIP-Seq'
1.816792 Gtype    b'+2:ner:SUPP'
1.813831 O        b'lemma:rpob'
1.813831 O        b'word:RpoB'
1.797275 Vess     b'lemma:flask'
1.797275 Vess     b'-1:lemma:warm'
1.797275 Vess     b'word:flask'
1.797275 Vess     b'-1:word:warmed'
1.770920 Med      b'lemma:MOPS'
1.770920 Med      b'word:MOPS'
1.769473 O        b'+1:lemma:pq'
1.769473 O        b'+1:word:PQ'
1.757809 Gtype    b'lemma:type'
1.757809 Gtype    b'word:type'
1.755679 O        b'word:A'
1.755199 O        b'-1:lemma:0.3'
1.755199 O        b'-1:word:0.3'
1.740301 Supp     b'-1:word:Cra'
1.694537 O        b'lemma:3'
1.694537 O        b'word:3'
1.683769 O        b'lemma:at'
1.682866 Strain   b'+1:lemma:substr'
1.682866 Strain   b'+1:word:substr'
1.681698 Substrain b'lemma:mg1655'
1.681698 Substrain b'word:MG1655'
1.669947 Supp     b'lemma:dpd'
1.669947 Supp     b'word:DPD'
1.668911 O        b'-2:ner:MED'
1.659216 O        b'lemma:purr'
1.659216 O        b'word:PurR'
1.651153 O        b'-1:lemma:glucose'
1.651153 O        b'-1:word:glucose'
1.642788 Med      b'isUpper'
1.637272 Supp     b'lemma:iptg'
1.637272 Supp     b'word:IPTG'
1.626126 O        b'-1:lemma:lb'
1.622665 Air      b'lemma:aerobic'
1.609878 O        b'lemma:rep2'
1.609878 O        b'word:rep2'
1.609878 O        b'lemma:rep1'
1.609878 O        b'word:rep1'
1.604930 Gtype    b'lemma:wild-type'
1.601814 Vess     b'-1:postag:VBN'
1.586046 O        b'lemma:CEL'
1.586046 O        b'word:CEL'
1.542946 O        b'-1:word:Anaerobic'
1.512548 Gversion b'word:ChIP-Seq'
1.509847 O        b'+1:ner:MED'
1.504142 O        b'lemma:with'
1.504142 O        b'word:with'
1.496958 O        b'+1:lemma:od600'
1.496958 O        b'+1:word:OD600'
1.495838 Gtype    b'+1:lemma:type'
1.495838 Gtype    b'+1:word:type'
1.494224 Temp     b'lemma:\xc2\xb0c'
1.494224 Temp     b'word:\xc2\xb0C'
1.480548 O        b'-1:word:Aerobic'
1.477326 Gtype    b'lemma:delta-fnr'
1.477326 Gtype    b'word:delta-fnr'
1.476989 Supp     b'-1:lemma:vol'
1.476989 Supp     b'-1:word:vol'
1.476986 O        b'lemma:ompr'
1.474558 Supp     b'+1:lemma:Deficient'
1.473491 Med      b'lemma:media'
1.473491 Med      b'word:media'
1.472076 Supp     b'lemma:nacl'
1.472076 Supp     b'word:NaCl'
1.468310 pH       b'+1:postag:CD'
1.459994 Supp     b'+1:word:was'
1.456210 Technique b'word:RNA-Seq'
1.446262 Air      b'-1:lemma:-'
1.446262 Air      b'-1:word:-'
1.434448 Anti     b'lemma:seqa'
1.434448 Anti     b'word:SeqA'
1.429652 O        b'postag:IN'
1.427920 O        b'-1:postag:NNS'
1.421780 Gtype    b'lemma:arca8myc'
1.421780 Gtype    b'word:ArcA8myc'
1.420497 Gtype    b'-1:postag:VBP'
1.416863 Gversion b'lemma:chip-seq'
1.415386 pH       b'lemma:ph5'
1.415386 pH       b'+1:lemma:.5'
1.415386 pH       b'word:pH5'
1.415386 pH       b'+1:word:.5'
1.402559 O        b'lemma:trpr'
1.402559 O        b'word:TrpR'
1.401528 Air      b'lemma:anaeroibc'
1.401528 Air      b'word:Anaeroibc'
1.397831 Temp     b'-1:lemma:37'
1.397831 Temp     b'-1:word:37'
1.396455 Agit     b'lemma:rpm'
1.396455 Agit     b'word:rpm'
1.396425 Technique b'lemma:rnaseq'
1.396425 Technique b'word:RNASeq'
1.395752 Supp     b'lemma:arginine'
1.391208 Gtype    b'postag:JJ'
1.388213 Gtype    b'lemma:pk4854'
1.388213 Gtype    b'word:PK4854'
1.386331 Air      b'-1:postag::'
1.384131 Supp     b'-1:lemma:Cra'
1.379095 O        b'word:Lrp'
1.377178 Agit     b'+1:lemma:rpm'
1.377178 Agit     b'+1:word:rpm'
1.366153 Med      b'+1:lemma:0.4'
1.366153 Med      b'+1:word:0.4'
1.364907 Supp     b'lemma:Fe'
1.364907 Supp     b'word:Fe'
1.362388 OD       b'lemma:od450'
1.362388 OD       b'word:OD450'
1.362388 OD       b'-1:word:At'
1.358445 O        b'word:OmpR'
1.354823 Med      b'lemma:LB'
1.346488 Anti     b'lemma:none'
1.346488 Anti     b'word:none'
1.344709 O        b'-1:lemma:pq'
1.344709 O        b'-1:word:PQ'
1.334578 Supp     b'lemma:Adenine'
1.334578 Supp     b'word:Adenine'
1.334076 Supp     b'lemma:rifampicin'
1.334076 Supp     b'word:rifampicin'
1.332477 Gtype    b'-1:lemma:\xe2\x88\x86'
1.332477 Gtype    b'-1:word:\xe2\x88\x86'
1.330245 Med      b'-1:word:ml'
1.326245 Med      b'-1:lemma:ml'
1.319858 Supp     b'+1:lemma:iptg'
1.319858 Supp     b'+1:word:IPTG'
1.317656 Gversion b'lemma:nc'
1.317656 Gversion b'word:NC'
1.314430 Agit     b'-1:lemma:250'
1.314430 Agit     b'-1:word:250'
1.307718 Supp     b'-1:lemma:with'
1.307718 Supp     b'-1:word:with'
1.299798 Gtype    b'+1:lemma:pq'
1.299798 Gtype    b'+1:word:PQ'
1.295281 Air      b'+1:lemma:%'
1.295281 Air      b'+1:word:%'
1.292805 O        b'+1:word:ChIP-Seq'
1.288654 Med      b'lemma:minimal'
1.288654 Med      b'word:minimal'
1.287383 Gtype    b'lemma:dfnr'
1.287383 Gtype    b'word:dFNR'
1.275168 Anti     b'lemma:\xcf\x8332'
1.275168 Anti     b'word:\xcf\x8332'
1.259735 Supp     b'lemma:glucose'
1.259735 Supp     b'word:glucose'
1.258165 Supp     b'lemma:acetate'
1.258165 Supp     b'word:acetate'
1.255203 O        b'lemma:argr'
1.255203 O        b'word:ArgR'
1.253721 Substrain b'lemma:mg1655star'
1.253721 Substrain b'word:MG1655star'
1.253496 O        b'lemma:chip-arca'
1.253496 O        b'word:chip-ArcA'
1.251963 O        b'+1:lemma:wt'
1.250139 O        b'+1:word:WT'
1.249518 O        b'word:C'
1.248341 Supp     b'+1:word:hours'
1.247086 O        b'+1:word:were'
1.246610 Temp     b'+1:lemma:\xc2\xb0c'
1.246610 Temp     b'+1:word:\xc2\xb0C'
1.242909 O        b'lemma:a'
1.241249 Gtype    b'lemma:\xce\xb4oxyr'
1.241249 Gtype    b'word:\xce\x94oxyR'
1.240733 Gtype    b'-1:lemma:nsrr'
1.240733 Gtype    b'+1:lemma:flagtag'
1.240733 Gtype    b'-1:word:NsrR'
1.240733 Gtype    b'+1:word:Flagtag'
1.237907 O        b'lemma:chip-fnr'
1.237907 O        b'word:chip-Fnr'
1.229323 Gtype    b'lemma:\xe2\x88\x86'
1.229323 Gtype    b'word:\xe2\x88\x86'
1.220131 Med      b'postag:NNP'
1.215026 Gtype    b'+1:lemma:with'
1.215026 Gtype    b'+1:word:with'
1.213345 Gversion b'lemma:u00096'
1.213345 Gversion b'+1:lemma:.2'
1.213345 Gversion b'word:U00096'
1.213345 Gversion b'+1:word:.2'
1.213243 Temp     b'lemma:43'
1.213243 Temp     b'word:43'
1.213091 Agit     b'lemma:250'
1.213091 Agit     b'word:250'
1.211600 O        b'lemma:soxr'
1.211600 O        b'word:SoxR'
1.211600 O        b'lemma:soxs'
1.211600 O        b'word:SoxS'
1.209297 OD       b'-1:lemma:at'
1.209215 Gversion b'lemma:000913'
1.209215 Gversion b'word:000913'
1.204628 OD       b'postag:CD'
1.204419 O        b'postag:VBN'
1.200947 Supp     b'-1:lemma:+'
1.200947 Supp     b'-1:word:+'
1.197785 OD       b'+1:postag:IN'
1.193707 Med      b'lemma:medium'
1.193707 Med      b'word:medium'
1.191158 Gtype    b'lemma:wildtype'
1.189882 O        b'lemma:or'
1.189882 O        b'word:or'
1.186748 Air      b'lemma:Anaerobic'
1.182703 Supp     b'postag:NNP'
1.180189 Temp     b'-1:lemma:43'
1.180189 Temp     b'-1:word:43'
1.174557 O        b'-1:lemma:ChIP-exo'
1.168381 Gversion b'lemma:.2'
1.168381 Gversion b'-1:lemma:u00096'
1.168381 Gversion b'word:.2'
1.168381 Gversion b'-1:word:U00096'
1.166855 Phase    b'-1:lemma:mid-log'
1.166855 Phase    b'-1:word:mid-log'
1.165923 Substrain b'+1:lemma:phtpg'
1.165923 Substrain b'+1:word:PhtpG'
1.164973 O        b'lemma:affyexp'
1.164973 O        b'word:affyexp'
1.164728 O        b'isLower'
1.162835 Temp     b'-1:lemma:sample'
1.160271 Gtype    b'lemma:\xce\xb4ompr'
1.160271 Gtype    b'word:\xce\x94ompR'
1.153402 Supp     b'lemma:Leu'
1.153402 Supp     b'word:Leu'
1.143037 Supp     b'+1:lemma:deficient'
1.139651 Gversion b'-1:lemma:nc'
1.139651 Gversion b'+1:lemma:000913'
1.139651 Gversion b'-1:word:NC'
1.139651 Gversion b'+1:word:000913'
1.138573 Gtype    b'+1:lemma:ph5'
1.138573 Gtype    b'+1:word:pH5'
1.132526 Temp     b'-1:word:sample'
1.126949 Supp     b'+1:lemma:1'
1.126949 Supp     b'+1:word:1'
1.123436 O        b'isNumber'
1.119028 OD       b'-1:postag:IN'
1.114654 Med      b'+1:postag:CD'
1.110447 Med      b'-1:lemma:minimal'
1.110447 Med      b'-1:word:minimal'
1.107462 O        b'+1:lemma:k-12'
1.107462 O        b'+1:word:K-12'
1.105621 O        b'-1:lemma:nh4cl'
1.104913 O        b'lemma:for'
1.097475 Air      b'-1:lemma:co2'
1.097475 Air      b'-1:word:CO2'
1.094202 Vess     b'+1:lemma:at'
1.094202 Vess     b'+1:word:at'
1.092444 Supp     b'-1:postag:IN'
1.092284 O        b'+1:lemma:\xe2\x88\x86'
1.092284 O        b'+1:word:\xe2\x88\x86'
1.086451 Gtype    b'-1:lemma:_'
1.086451 Gtype    b'-1:word:_'
1.083353 O        b'lemma:gadx'
1.082222 Supp     b'word:NH4CL'
1.079738 O        b'-1:ner:_'
1.077241 Supp     b'+1:lemma:2'
1.077241 Supp     b'+1:word:2'
1.070646 Supp     b'+1:lemma:hour'
1.067844 O        b'+1:lemma:43'
1.067844 O        b'+1:word:43'
1.066855 O        b'-1:word:ChIP-exo'
1.061012 Supp     b'-1:postag:CD'
1.060437 Technique b'+1:ner:TF'
1.058045 O        b'word:GadX'
1.056573 Med      b'-1:lemma:in'
1.056573 Med      b'-1:word:in'
1.050937 Gtype    b'+1:postag::'
1.050066 O        b'lemma:chip'
1.048257 Supp     b'-1:lemma:sodium'
1.048257 Supp     b'-1:word:Sodium'
1.044448 Substrain b'-1:lemma:.'
1.044448 Substrain b'-1:postag:.'
1.044448 Substrain b'-1:word:.'
1.043988 Supp     b'+1:lemma:_'
1.043988 Supp     b'+1:word:_'
1.043978 O        b'-1:lemma:acetate'
1.043978 O        b'-1:word:acetate'
1.040827 Supp     b'lemma:fructose'
1.040827 Supp     b'word:fructose'
1.039676 Anti     b'-1:lemma::'
1.039676 Anti     b'-1:word::'
1.037650 Technique b'-1:lemma:chip-exo'
1.033488 O        b'-1:lemma:nacl'
1.033488 O        b'-1:word:NaCl'
1.028454 O        b'lemma:\xcf\x8332'
1.028454 O        b'word:\xcf\x8332'
1.027676 Air      b'-1:lemma:_'
1.027676 Air      b'-1:word:_'
1.019199 Gversion b'+1:lemma:genome'
1.019199 Gversion b'+1:word:genome'
1.014996 O        b'lemma::'
1.014996 O        b'word::'
1.014809 O        b'-1:lemma:anaerobic'
1.011977 Technique b'lemma:ChIP-Seq'
1.011955 O        b'lemma:input'
1.011955 O        b'+1:lemma:chip-seq'
1.011955 O        b'word:Input'
1.011038 Technique b'-1:lemma:_'
1.011038 Technique b'-1:word:_'
1.010476 Gtype    b'lemma:deltaseqa'
1.010476 Gtype    b'-1:lemma:old'
1.010476 Gtype    b'word:deltaSeqA'
1.010476 Gtype    b'-1:word:old'
1.009485 Supp     b'word:NH4Cl'
1.006417 Technique b'-1:lemma:IP'
1.006417 Technique b'-1:word:IP'
1.004945 Technique b'+1:lemma:rna-seq'
1.004945 Technique b'+1:word:RNA-seq'
1.004262 Gtype    b'+1:lemma::'
1.004262 Gtype    b'+1:word::'
1.002626 O        b'+1:lemma:250'
1.002626 O        b'+1:word:250'
0.997388 O        b'-1:lemma:wt'
0.995597 OD       b'-1:lemma:od450'
0.995597 OD       b'-1:word:OD450'
0.995447 O        b'lemma:s'
0.995447 O        b'word:S'
0.994119 O        b'postag:DT'
0.991851 O        b'word:for'
0.991770 O        b'+1:lemma:m9'
0.991770 O        b'+1:word:M9'
0.991274 O        b'+2:ner:_'
0.988526 Gtype    b'+1:lemma:_'
0.988526 Gtype    b'+1:word:_'
0.987237 O        b'+2:ner:KWSUPP'
0.987234 O        b'-1:lemma:type'
0.987234 O        b'-1:word:type'
0.986494 Gtype    b'lemma:\xce\xb4soxs'
0.986494 Gtype    b'word:\xce\x94soxS'
0.981104 Technique b'postag:NNP'
0.980948 Technique b'lemma:chip-seq'
0.977799 Med      b'+1:lemma:2.0'
0.977799 Med      b'+1:word:2.0'
0.975756 Gtype    b'-1:lemma::'
0.975756 Gtype    b'-1:word::'
0.973040 Gtype    b'-1:lemma:ptac'
0.973040 Gtype    b'-1:word:Ptac'
0.971630 Supp     b'word:Arginine'
0.971520 O        b'lemma:contain'
0.971520 O        b'word:containing'
0.968230 O        b'+1:lemma:ph5'
0.968230 O        b'+1:word:pH5'
0.968075 Gtype    b'word:wild-type'
0.966293 Gtype    b'lemma:WT'
0.964822 Gtype    b'+1:lemma:control'
0.964822 Gtype    b'+1:word:control'
0.963569 Gtype    b'lemma:\xce\xb4soxr'
0.963569 Gtype    b'word:\xce\x94soxR'
0.960519 O        b'+1:lemma:coli'
0.960519 O        b'+1:word:coli'
0.959978 Supp     b'+1:lemma:be'
0.959875 O        b'lemma:culture'
0.959015 O        b'-1:lemma:fructose'
0.959015 O        b'-1:word:fructose'
0.956007 Med      b'-1:lemma:fresh'
0.956007 Med      b'-1:word:fresh'
0.955907 Phase    b'-1:lemma:until'
0.955907 Phase    b'-1:word:until'
0.954283 O        b'+1:ner:_'
0.949193 O        b'+1:postag:RB'
0.948475 Gtype    b'-1:lemma:rpob'
0.948475 Gtype    b'-1:word:RpoB'
0.947172 pH       b'-1:postag:NN'
0.946250 Gversion b'-1:postag:DT'
0.945623 O        b'-1:ner:TF'
0.945573 Gtype    b'-1:lemma:factor'
0.945573 Gtype    b'-1:word:factor'
0.944689 O        b'lemma:oxyr'
0.944689 O        b'word:OxyR'
0.941210 Temp     b'-1:lemma:\xcf\x8332'
0.941210 Temp     b'-1:word:\xcf\x8332'
0.938861 O        b'-1:lemma:no3'
0.938861 O        b'-1:word:NO3'
0.934662 Anti     b'+1:lemma:antibody'
0.934662 Anti     b'+1:word:antibody'
0.933491 Technique b'-1:lemma:1'
0.933491 Technique b'-1:word:1'
0.929503 Strain   b'-1:lemma:.'
0.929503 Strain   b'-1:postag:.'
0.929503 Strain   b'-1:word:.'
0.928587 Gtype    b'lemma:flagtag'
0.928587 Gtype    b'word:Flagtag'
0.928358 Gtype    b'-1:lemma:wild'
0.928358 Gtype    b'-1:word:wild'
0.927234 Med      b'postag:NNS'
0.925614 Supp     b'-1:lemma:contain'
0.925614 Supp     b'-1:word:containing'
0.922596 Technique b'-1:lemma:rna-seq'
0.922596 Technique b'-1:word:RNA-seq'
0.921643 Air      b'-1:lemma:cm20'
0.921643 Air      b'-1:word:Cm20'
0.919176 Air      b'+1:lemma:at'
0.919176 Air      b'+1:word:at'
0.914297 Technique b'+1:postag:NN'
0.913756 O        b'+1:lemma:0.2'
0.913756 O        b'+1:word:0.2'
0.910877 Supp     b'lemma:tryptophan'
0.910877 Supp     b'-1:lemma:mg/l'
0.910877 Supp     b'word:tryptophan'
0.910877 Supp     b'-1:word:mg/L'
0.910335 O        b'+1:lemma:od450'
0.910335 O        b'word:At'
0.910335 O        b'+1:word:OD450'
0.909964 OD       b'lemma:0.3'
0.909964 OD       b'word:0.3'
0.909441 Gtype    b'postag:NN'
0.906777 Gversion b'lemma:_'
0.906777 Gversion b'word:_'
0.904247 Med      b'+1:lemma:+'
0.904247 Med      b'+1:word:+'
0.903940 Air      b'-1:lemma:ryhb'
0.903940 Air      b'-1:word:ryhB'
0.897848 Gtype    b'lemma:ptac'
0.897848 Gtype    b'word:Ptac'
0.895279 Med      b'lemma:m63'
0.895279 Med      b'word:M63'
0.894799 Phase    b'isLower'
0.890776 Technique b'-1:word:ChIP-exo'
0.884851 OD       b'+1:lemma:of'
0.884851 OD       b'+1:word:of'
0.881380 O        b'-1:lemma:into'
0.881380 O        b'-1:word:into'
0.880063 Supp     b'+1:lemma:mm'
0.880063 Supp     b'+1:word:mM'
0.880063 Supp     b'+1:ner:KWSUPP'
0.878944 Air      b'-1:lemma:%'
0.878944 Air      b'-1:word:%'
0.878803 O        b'word:at'
0.875592 Supp     b'lemma:glutamine'
0.875592 Supp     b'-1:lemma:2g/l'
0.875592 Supp     b'word:glutamine'
0.875592 Supp     b'-1:word:2g/L'
0.874382 Supp     b'-1:word:OmpR'
0.870977 O        b'-1:lemma:stpa'
0.870977 O        b'-1:word:stpA'
0.863359 O        b'lemma:harbor'
0.863359 O        b'word:harboring'


Top negative:
-0.090758 O        b'+1:word:~'
-0.090812 O        b'-1:lemma:chip-exo'
-0.091383 O        b'-1:word:purified'
-0.091467 Supp     b'postag:NNS'
-0.091597 Agit     b'-1:ner:_'
-0.093107 OD       b'+1:lemma:.'
-0.093107 OD       b'+1:postag:.'
-0.093107 OD       b'+1:word:.'
-0.093738 Gtype    b'-1:postag:NNS'
-0.094453 Supp     b'+2:ner:KWSUPP'
-0.094477 O        b'-1:lemma:od600'
-0.094477 O        b'-1:word:OD600'
-0.095255 Gtype    b'lemma:delta'
-0.095255 Gtype    b'word:delta'
-0.096219 O        b'-1:lemma:Fur'
-0.096219 O        b'-1:word:Fur'
-0.097971 Supp     b'-1:word:the'
-0.099338 O        b'-1:lemma:.'
-0.099338 O        b'-1:postag:.'
-0.099338 O        b'-1:word:.'
-0.099391 O        b'-1:lemma:phosphate'
-0.099391 O        b'-1:word:phosphate'
-0.100246 Air      b'-1:postag:CC'
-0.101127 Strain   b'isNumber'
-0.101957 O        b'+1:lemma:='
-0.101957 O        b'+1:word:='
-0.104308 Air      b'lemma:anaerobically'
-0.104308 Air      b'word:anaerobically'
-0.104678 O        b'-1:lemma:final'
-0.104678 O        b'-1:word:final'
-0.106336 O        b'+1:lemma:media'
-0.106336 O        b'+1:word:media'
-0.106961 O        b'-1:postag:IN'
-0.107782 Supp     b'-1:lemma:Fe'
-0.107782 Supp     b'-1:word:Fe'
-0.109738 Technique b'+1:postag:JJ'
-0.110751 Substrain b'+2:ner:_'
-0.110962 Gtype    b'-1:lemma:,'
-0.110962 Gtype    b'-1:postag:,'
-0.110962 Gtype    b'-1:word:,'
-0.112079 O        b'-1:postag:DT'
-0.112589 Vess     b'isNumber'
-0.113897 Supp     b'-1:lemma:the'
-0.113951 Supp     b'postag:-LRB-'
-0.114100 O        b'+1:word:a'
-0.114989 O        b'+1:lemma:purify'
-0.115252 O        b'lemma:n2'
-0.115252 O        b'word:N2'
-0.115922 Vess     b'postag:NN'
-0.116515 O        b'lemma:hour'
-0.117598 O        b'lemma:nitrate'
-0.117598 O        b'word:nitrate'
-0.120631 Gtype    b'-1:lemma:and'
-0.120631 Gtype    b'-1:word:and'
-0.121381 Supp     b'lemma:-lrb-'
-0.121381 Supp     b'word:-LRB-'
-0.124372 O        b'-1:lemma:mm'
-0.124372 O        b'-1:word:mM'
-0.127546 O        b'-1:lemma:sodium'
-0.127546 O        b'-1:word:Sodium'
-0.130408 Technique b'-2:ner:_'
-0.131348 O        b'-1:lemma:gade'
-0.131796 Supp     b'lemma:,'
-0.131796 Supp     b'postag:,'
-0.131796 Supp     b'word:,'
-0.132486 Gversion b'+1:postag:NN'
-0.133936 O        b'+1:postag:FW'
-0.135245 O        b'-1:lemma:minimal'
-0.135245 O        b'-1:word:minimal'
-0.135787 O        b'+1:lemma:1/100'
-0.135787 O        b'+1:word:1/100'
-0.136004 O        b'+1:lemma:_'
-0.136004 O        b'+1:word:_'
-0.136835 O        b'lemma:affinity'
-0.137837 O        b'+1:lemma:.'
-0.137837 O        b'+1:postag:.'
-0.137837 O        b'+1:word:.'
-0.138505 Phase    b'-1:word:at'
-0.138791 O        b'-2:ner:SUPP'
-0.139186 O        b'-1:lemma:at'
-0.140629 Gtype    b'+1:postag:-LRB-'
-0.140808 Supp     b'lemma:.'
-0.140808 Supp     b'postag:.'
-0.140808 Supp     b'word:.'
-0.140832 O        b'+1:lemma:%'
-0.140832 O        b'+1:word:%'
-0.145607 Supp     b'-1:lemma:and'
-0.145607 Supp     b'-1:word:and'
-0.145840 O        b'-1:word:for'
-0.146246 O        b'+1:lemma:rna'
-0.146246 O        b'+1:word:RNA'
-0.147280 O        b'lemma:rna'
-0.147280 O        b'word:RNA'
-0.147624 Substrain b'isNumber'
-0.148476 Substrain b'+1:ner:_'
-0.149190 Phase    b'+1:ner:_'
-0.153369 Gtype    b'+1:lemma:b'
-0.153369 Gtype    b'+1:word:B'
-0.153491 O        b'+1:word:purified'
-0.154715 Anti     b'+2:ner:_'
-0.155108 Anti     b'-1:postag:CD'
-0.156540 Supp     b'-1:postag:VBN'
-0.157024 Gtype    b'lemma:control'
-0.157024 Gtype    b'word:control'
-0.157268 O        b'+1:lemma:mg1655'
-0.157268 O        b'+1:word:MG1655'
-0.157444 Gtype    b'-1:lemma:mg1655'
-0.157444 Gtype    b'-1:word:MG1655'
-0.157739 O        b'-1:lemma:0.2'
-0.157739 O        b'-1:word:0.2'
-0.158485 O        b'+1:lemma:-lcb-'
-0.158485 O        b'+1:word:-LCB-'
-0.159410 O        b'+1:postag:VB'
-0.159817 O        b'-1:lemma:gadw'
-0.159901 O        b'postag:VB'
-0.161844 Supp     b'+1:lemma:glucose'
-0.161844 Supp     b'+1:word:glucose'
-0.162907 O        b'lemma:\xc3\x9f'
-0.162907 O        b'word:\xc3\x9f'
-0.164058 Air      b'-1:lemma::'
-0.164058 Air      b'-1:word::'
-0.164162 Phase    b'+2:ner:_'
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