report_Run11_v10.txt 36.8 KB
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********** TRAINING AND TESTING REPORT **********
Training file: training-data-set-70-NER.txt

best params:{'c1': 0.12769192015733927, 'c2': 9.146835014134972e-05}
best CV score:0.8106324641347842
model size: 0.11M

Flat F1: 0.8156688443487435
             precision    recall  f1-score   support

         OD      0.913     1.000     0.955        21
         pH      1.000     1.000     1.000        10
  Technique      1.000     1.000     1.000        33
        Med      1.000     0.804     0.891        56
       Temp      0.857     0.800     0.828        15
       Vess      0.000     0.000     0.000         0
       Agit      1.000     0.286     0.444         7
      Phase      1.000     0.762     0.865        21
        Air      0.900     0.409     0.563        88
       Anti      0.565     1.000     0.722        13
     Strain      0.000     0.000     0.000         0
      Gtype      0.955     0.808     0.875        78
  Substrain      0.000     0.000     0.000         0
       Supp      0.884     0.838     0.860       136
   Gversion      1.000     0.500     0.667         6

avg / total      0.922     0.760     0.816       484


Top likely transitions:
Anti   -> Anti    6.517264
Med    -> Med     5.884468
Temp   -> Temp    5.695095
Air    -> Air     5.552953
Supp   -> Supp    5.510916
Technique -> Technique 5.325216
Gversion -> Gversion 5.283324
OD     -> OD      5.253507
Gtype  -> Gtype   5.060777
Phase  -> Phase   4.357374
pH     -> pH      3.984618
Agit   -> Agit    3.739817
O      -> O       3.149180
Technique -> Air     2.051832
Substrain -> Gtype   1.384541
Gtype  -> Supp    0.997417
O      -> Technique 0.631451
Air    -> O       0.436560
Gtype  -> pH      0.406006
O      -> Gtype   0.161162
O      -> Supp    0.119820
Gtype  -> Air     0.071539
Phase  -> Air     0.006006
Anti   -> O       0.001426
Air    -> Agit    -0.002728
Supp   -> O       -0.077298
O      -> Phase   -0.104993
Med    -> O       -0.106231
Gtype  -> Phase   -0.129778
O      -> Temp    -0.153537
Phase  -> O       -0.162053
Gtype  -> Anti    -0.215768
OD     -> Air     -0.295657
O      -> Anti    -0.321520
Phase  -> OD      -0.486941
OD     -> O       -0.593739
O      -> Air     -0.603792
Technique -> Gtype   -0.667905
Air    -> Phase   -0.697155
O      -> Med     -0.813816
Supp   -> Med     -0.985451
O      -> OD      -1.010053
Technique -> pH      -1.143657
Gtype  -> O       -1.185551
Substrain -> O       -1.658042
Med    -> Supp    -2.043672


Top unlikely transitions:
Anti   -> Anti    6.517264
Med    -> Med     5.884468
Temp   -> Temp    5.695095
Air    -> Air     5.552953
Supp   -> Supp    5.510916
Technique -> Technique 5.325216
Gversion -> Gversion 5.283324
OD     -> OD      5.253507
Gtype  -> Gtype   5.060777
Phase  -> Phase   4.357374
pH     -> pH      3.984618
Agit   -> Agit    3.739817
O      -> O       3.149180
Technique -> Air     2.051832
Substrain -> Gtype   1.384541
Gtype  -> Supp    0.997417
O      -> Technique 0.631451
Air    -> O       0.436560
Gtype  -> pH      0.406006
O      -> Gtype   0.161162
O      -> Supp    0.119820
Gtype  -> Air     0.071539
Phase  -> Air     0.006006
Anti   -> O       0.001426
Air    -> Agit    -0.002728
Supp   -> O       -0.077298
O      -> Phase   -0.104993
Med    -> O       -0.106231
Gtype  -> Phase   -0.129778
O      -> Temp    -0.153537
Phase  -> O       -0.162053
Gtype  -> Anti    -0.215768
OD     -> Air     -0.295657
O      -> Anti    -0.321520
Phase  -> OD      -0.486941
OD     -> O       -0.593739
O      -> Air     -0.603792
Technique -> Gtype   -0.667905
Air    -> Phase   -0.697155
O      -> Med     -0.813816
Supp   -> Med     -0.985451
O      -> OD      -1.010053
Technique -> pH      -1.143657
Gtype  -> O       -1.185551
Substrain -> O       -1.658042
Med    -> Supp    -2.043672


Top positive:
8.360341 Air      b'word:Aerobic'
7.279040 O        b'word:Cra'
6.439005 Air      b'word:Anaerobic'
5.792598 Technique b'word:ChIP-Seq'
5.604139 O        b'lemma:_'
5.604139 O        b'word:_'
5.590833 Technique b'word:ChIPSeq'
5.431384 Technique b'word:ChIP-exo'
5.361358 Air      b'lemma:anaerobic'
5.118357 Gtype    b'word:WT'
4.914828 O        b'lemma:at'
4.844212 O        b'postag:VBG'
4.790986 Phase    b'lemma:stationary'
4.790986 Phase    b'word:stationary'
4.790986 Phase    b'lemma:exponential'
4.790986 Phase    b'word:exponential'
4.738479 Phase    b'lemma:mid-log'
4.738479 Phase    b'word:mid-log'
4.588399 Supp     b'-1:ner:SUPP'
4.454226 Technique b'lemma:rna-seq'
4.434788 O        b'word:A'
4.389783 O        b'lemma:-'
4.389783 O        b'word:-'
4.171442 O        b'-1:lemma:lb'
4.064167 Supp     b'lemma:Iron'
4.064167 Supp     b'word:Iron'
4.064167 Supp     b'+1:word:Deficient'
4.023330 Air      b'postag:RB'
3.985175 O        b'lemma:chip'
3.945860 Technique b'lemma:chipseq'
3.809191 Gtype    b'lemma:type'
3.809191 Gtype    b'word:type'
3.799624 Med      b'lemma:MOPS'
3.799624 Med      b'word:MOPS'
3.782800 Supp     b'lemma:nh4cl'
3.737775 O        b'lemma:for'
3.600615 O        b'-1:lemma:tag'
3.596449 Supp     b'+1:lemma:\xc2\xb5m'
3.596449 Supp     b'+1:word:\xc2\xb5M'
3.560879 Gtype    b'-1:postag:VBG'
3.535178 Supp     b'-1:word:Cra'
3.508164 Supp     b'lemma:pq'
3.508164 Supp     b'word:PQ'
3.482662 Gversion b'lemma:asm584v2'
3.482662 Gversion b'word:ASM584v2'
3.395856 O        b'+1:word:ChIP-Seq'
3.294400 Med      b'word:LB'
3.291627 Gtype    b'lemma:\xce\xb4cra'
3.271384 Gtype    b'word:\xce\x94cra'
3.199736 O        b'lemma:b'
3.199736 O        b'word:B'
3.132146 Gtype    b'lemma:\xce\xb4fur'
3.132146 Gtype    b'word:\xce\x94fur'
3.124842 Supp     b'lemma:arginine'
3.112812 Med      b'lemma:LB'
3.009817 Technique b'lemma:rnaseq'
3.009817 Technique b'word:RNASeq'
2.999523 O        b'+1:ner:MED'
2.990198 Strain   b'lemma:k-12'
2.990198 Strain   b'word:K-12'
2.954721 Strain   b'+1:lemma:substr'
2.954721 Strain   b'+1:word:substr'
2.931906 O        b'lemma:rpob'
2.931906 O        b'word:RpoB'
2.888701 Supp     b'lemma:2h'
2.888701 Supp     b'-1:lemma:additional'
2.888701 Supp     b'word:2h'
2.888701 Supp     b'-1:word:additional'
2.886307 Agit     b'+1:lemma:rpm'
2.886307 Agit     b'+1:word:rpm'
2.833186 Vess     b'lemma:flask'
2.833186 Vess     b'-1:lemma:warm'
2.833186 Vess     b'word:flask'
2.833186 Vess     b'-1:word:warmed'
2.810090 O        b'-1:word:tag'
2.808694 Agit     b'lemma:rpm'
2.808694 Agit     b'word:rpm'
2.798585 Gtype    b'lemma:wild-type'
2.706935 Gtype    b'lemma:wt'
2.680763 Gtype    b'lemma:pk4854'
2.680763 Gtype    b'word:PK4854'
2.670171 Gtype    b'-1:ner:GEN'
2.639829 O        b'-1:postag:NNS'
2.630805 O        b'postag::'
2.630531 O        b'word:OmpR'
2.609125 O        b'-1:word:Aerobic'
2.579319 Supp     b'-1:lemma:Cra'
2.576882 Temp     b'-1:word:sample'
2.564689 Gversion b'lemma:chip-seq'
2.547680 Supp     b'+1:word:hours'
2.514344 O        b'lemma:3'
2.514344 O        b'word:3'
2.513352 Temp     b'-1:lemma:sample'
2.504306 Gversion b'lemma:nc'
2.504306 Gversion b'word:NC'
2.486827 O        b'lemma:with'
2.486827 O        b'word:with'
2.427929 Gtype    b'+2:ner:SUPP'
2.418307 O        b'-1:lemma:0.3'
2.418307 O        b'-1:word:0.3'
2.411386 pH       b'+1:postag:CD'
2.409061 O        b'lemma:2'
2.409061 O        b'word:2'
2.403590 O        b'-2:ner:MED'
2.394699 Gversion b'word:ChIP-Seq'
2.357572 Supp     b'lemma:iptg'
2.357572 Supp     b'word:IPTG'
2.343084 Air      b'-1:lemma:-'
2.343084 Air      b'-1:word:-'
2.331496 Supp     b'lemma:nacl'
2.331496 Supp     b'word:NaCl'
2.324567 O        b'lemma:.'
2.324567 O        b'postag:.'
2.324567 O        b'word:.'
2.323488 Med      b'-1:word:ml'
2.316477 Med      b'-1:lemma:ml'
2.312261 Substrain b'lemma:mg1655'
2.312261 Substrain b'word:MG1655'
2.291789 Gtype    b'+1:lemma:type'
2.291789 Gtype    b'+1:word:type'
2.273029 O        b'-1:lemma:ChIP-exo'
2.250391 Supp     b'lemma:Fe'
2.250391 Supp     b'word:Fe'
2.237179 Technique b'lemma:ChIP-exo'
2.210004 Air      b'lemma:aerobically'
2.210004 Air      b'word:aerobically'
2.209980 O        b'lemma:gadx'
2.188679 Supp     b'lemma:no3'
2.188679 Supp     b'word:NO3'
2.169114 O        b'lemma:1'
2.169114 O        b'word:1'
2.163126 O        b'lemma:rep2'
2.163126 O        b'word:rep2'
2.163126 O        b'lemma:rep1'
2.163126 O        b'word:rep1'
2.162496 O        b'-1:lemma:glucose'
2.162496 O        b'-1:word:glucose'
2.156563 OD       b'lemma:od450'
2.156563 OD       b'word:OD450'
2.156563 OD       b'-1:word:At'
2.151312 Gtype    b'lemma:\xce\xb4ompr'
2.151312 Gtype    b'word:\xce\x94ompR'
2.144416 O        b'word:Lrp'
2.124506 Technique b'-1:lemma:chip-exo'
2.117307 O        b'lemma:ompr'
2.105741 O        b'lemma::'
2.105741 O        b'word::'
2.081916 Supp     b'-1:lemma:vol'
2.081916 Supp     b'-1:word:vol'
2.069871 O        b'-1:word:Anaerobic'
2.023650 Air      b'lemma:anaeroibc'
2.023650 Air      b'word:Anaeroibc'
2.015906 Temp     b'-1:lemma:37'
2.015906 Temp     b'-1:word:37'
1.994623 O        b'-1:lemma:pq'
1.994623 O        b'-1:word:PQ'
1.991925 Gtype    b'+1:lemma:pq'
1.991925 Gtype    b'+1:word:PQ'
1.983958 Gtype    b'+1:lemma:ph5'
1.983958 Gtype    b'+1:word:pH5'
1.975604 Air      b'word:anaerobic'
1.974548 O        b'+1:lemma:wt'
1.971366 O        b'+1:word:WT'
1.968884 Supp     b'+1:lemma:iptg'
1.968884 Supp     b'+1:word:IPTG'
1.958627 O        b'+1:lemma:pq'
1.958627 O        b'+1:word:PQ'
1.955851 Gtype    b'-1:lemma:nsrr'
1.955851 Gtype    b'+1:lemma:flagtag'
1.955851 Gtype    b'-1:word:NsrR'
1.955851 Gtype    b'+1:word:Flagtag'
1.940278 Supp     b'lemma:dpd'
1.940278 Supp     b'word:DPD'
1.924050 Anti     b'lemma:seqa'
1.924050 Anti     b'word:SeqA'
1.918275 Supp     b'+1:word:was'
1.884547 Gversion b'lemma:000913'
1.884547 Gversion b'word:000913'
1.868661 O        b'+1:lemma:wash'
1.866338 Gtype    b'+1:lemma:the'
1.860405 O        b'lemma:purr'
1.860405 O        b'word:PurR'
1.846393 O        b'+1:word:were'
1.839224 Air      b'-1:lemma:ChIP-Seq'
1.839224 Air      b'-1:word:ChIP-Seq'
1.834161 Med      b'+1:lemma:2.0'
1.834161 Med      b'+1:word:2.0'
1.808357 O        b'lemma:\xcf\x8332'
1.808357 O        b'word:\xcf\x8332'
1.800338 Med      b'+1:lemma:0.4'
1.800338 Med      b'+1:word:0.4'
1.790957 O        b'-1:lemma:type'
1.790957 O        b'-1:word:type'
1.760410 Air      b'-1:lemma:co2'
1.760410 Air      b'-1:word:CO2'
1.760077 Anti     b'lemma:none'
1.760077 Anti     b'word:none'
1.755812 Anti     b'lemma:\xcf\x8332'
1.755812 Anti     b'word:\xcf\x8332'
1.754044 Gversion b'-1:lemma:nc'
1.754044 Gversion b'+1:lemma:000913'
1.754044 Gversion b'-1:word:NC'
1.754044 Gversion b'+1:word:000913'
1.750794 O        b'word:C'
1.748863 Supp     b'lemma:Adenine'
1.748863 Supp     b'word:Adenine'
1.727991 Supp     b'-1:lemma:+'
1.727991 Supp     b'-1:word:+'
1.710057 Gtype    b'-1:lemma:\xe2\x88\x86'
1.710057 Gtype    b'-1:word:\xe2\x88\x86'
1.708387 O        b'lemma:soxr'
1.708387 O        b'word:SoxR'
1.708387 O        b'lemma:soxs'
1.708387 O        b'word:SoxS'
1.706354 O        b'+1:lemma:k-12'
1.706354 O        b'+1:word:K-12'
1.705899 Med      b'lemma:medium'
1.705899 Med      b'word:medium'
1.672405 O        b'lemma:CEL'
1.672405 O        b'word:CEL'
1.668559 O        b'lemma:or'
1.668559 O        b'word:or'
1.641636 Gtype    b'lemma:\xce\xb4oxyr'
1.641636 Gtype    b'word:\xce\x94oxyR'
1.639392 pH       b'+1:lemma:5.5'
1.639392 pH       b'+1:word:5.5'
1.630147 Gtype    b'+1:word:the'
1.626724 O        b'-1:lemma:acetate'
1.626724 O        b'-1:word:acetate'
1.626499 Med      b'lemma:minimal'
1.626499 Med      b'word:minimal'
1.619564 Gtype    b'-1:postag:VBP'
1.610463 Anti     b'+1:lemma:antibody'
1.610463 Anti     b'+1:word:antibody'
1.610127 Temp     b'-1:lemma:\xcf\x8332'
1.610127 Temp     b'-1:word:\xcf\x8332'
1.603956 O        b'lemma:ml'
1.597602 Med      b'lemma:media'
1.597602 Med      b'word:media'
1.595276 Gtype    b'lemma:dfnr'
1.595276 Gtype    b'word:dFNR'
1.594658 Technique b'+1:ner:TF'
1.590270 Gtype    b'lemma:wildtype'
1.585597 Substrain b'lemma:mg1655star'
1.585597 Substrain b'word:MG1655star'
1.570040 Phase    b'-1:lemma:until'
1.570040 Phase    b'-1:word:until'
1.559842 Supp     b'lemma:rifampicin'
1.559842 Supp     b'word:rifampicin'
1.557655 O        b'lemma:trpr'
1.557655 O        b'word:TrpR'
1.549969 O        b'+1:postag:NNP'
1.541535 Gtype    b'+1:postag::'
1.511307 O        b'postag:DT'
1.505553 Phase    b'-1:lemma:mid-log'
1.505553 Phase    b'-1:word:mid-log'
1.496880 O        b'-1:lemma:nacl'
1.496880 O        b'-1:word:NaCl'
1.487124 O        b'-1:word:ChIP-exo'
1.484134 O        b'-1:lemma:into'
1.484134 O        b'-1:word:into'
1.483537 Gversion b'lemma:u00096'
1.483537 Gversion b'+1:lemma:.2'
1.483537 Gversion b'word:U00096'
1.483537 Gversion b'+1:word:.2'
1.477791 O        b'+1:lemma:od600'
1.477791 O        b'+1:word:OD600'
1.461168 O        b'-1:lemma:grow'
1.459452 Med      b'lemma:m63'
1.459452 Med      b'word:M63'
1.450067 Gtype    b'postag:JJ'
1.449909 O        b'lemma:oxyr'
1.449909 O        b'word:OxyR'
1.442942 Substrain b'+1:lemma:phtpg'
1.442942 Substrain b'+1:word:PhtpG'
1.438295 O        b'-1:lemma:fructose'
1.438295 O        b'-1:word:fructose'
1.436983 Supp     b'-1:lemma:with'
1.436983 Supp     b'-1:word:with'
1.423589 pH       b'lemma:ph5'
1.423589 pH       b'+1:lemma:.5'
1.423589 pH       b'word:pH5'
1.423589 pH       b'+1:word:.5'
1.410977 O        b'-1:lemma:wt'
1.410080 O        b'-1:word:grown'
1.398284 O        b'lemma:culture'
1.395140 Supp     b'+1:lemma:1'
1.395140 Supp     b'+1:word:1'
1.390676 Gtype    b'postag:-RRB-'
1.387063 Gtype    b'postag:-LRB-'
1.383134 Temp     b'-1:lemma:43'
1.383134 Temp     b'-1:word:43'
1.373748 O        b'postag:IN'
1.373420 Temp     b'lemma:\xc2\xb0c'
1.373420 Temp     b'word:\xc2\xb0C'
1.370411 Gtype    b'lemma:delta-fnr'
1.370411 Gtype    b'word:delta-fnr'
1.365225 O        b'-1:word:fnr'
1.361292 O        b'+1:lemma:coli'
1.361292 O        b'+1:word:coli'
1.341059 O        b'-1:postag:NNP'
1.336384 Supp     b'-1:postag:CD'
1.323171 O        b'+1:lemma:rifampicin'
1.323171 O        b'+1:word:rifampicin'
1.316765 Med      b'isUpper'
1.308785 Supp     b'lemma:Leu'
1.308785 Supp     b'word:Leu'
1.308614 Gversion b'lemma:.2'
1.308614 Gversion b'-1:lemma:u00096'
1.308614 Gversion b'word:.2'
1.308614 Gversion b'-1:word:U00096'
1.302740 O        b'lemma:harbor'
1.302740 O        b'word:harboring'
1.302507 Gtype    b'-1:lemma:_'
1.302507 Gtype    b'-1:word:_'
1.300390 O        b'isLower'
1.297977 Temp     b'lemma:43'
1.297977 Temp     b'word:43'
1.291543 O        b'lemma:um'
1.291543 O        b'word:uM'
1.283287 O        b'+1:word:wash'
1.276153 Gtype    b'lemma:\xe2\x88\x86'
1.276153 Gtype    b'word:\xe2\x88\x86'
1.274120 Gtype    b'-1:lemma:rpob'
1.274120 Gtype    b'-1:word:RpoB'
1.273920 OD       b'+1:postag:IN'
1.264446 Supp     b'+1:lemma:2'
1.264446 Supp     b'+1:word:2'
1.260978 Air      b'postag:JJ'
1.257941 OD       b'lemma:0.3'
1.257941 OD       b'word:0.3'
1.257011 Supp     b'-1:lemma:sodium'
1.257011 Supp     b'-1:word:Sodium'
1.252691 Med      b'-1:lemma:minimal'
1.252691 Med      b'-1:word:minimal'
1.250662 Temp     b'+1:lemma:\xc2\xb0c'
1.250662 Temp     b'+1:word:\xc2\xb0C'
1.249513 Gtype    b'-1:lemma:ptac'
1.249513 Gtype    b'-1:word:Ptac'
1.236867 Supp     b'lemma:acetate'
1.236867 Supp     b'word:acetate'
1.236788 Gtype    b'-1:lemma::'
1.236788 Gtype    b'-1:word::'
1.233610 Supp     b'lemma:fructose'
1.233610 Supp     b'word:fructose'
1.233301 O        b'postag:VBN'
1.225632 Med      b'-1:lemma:fresh'
1.225632 Med      b'-1:word:fresh'
1.211245 Supp     b'+1:lemma:_'
1.211245 Supp     b'+1:word:_'
1.207303 O        b'+1:postag:VBN'
1.204982 Supp     b'lemma:tryptophan'
1.204982 Supp     b'-1:lemma:mg/l'
1.204982 Supp     b'word:tryptophan'
1.204982 Supp     b'-1:word:mg/L'
1.197476 O        b'lemma:chip-arca'
1.197476 O        b'word:chip-ArcA'
1.195730 Agit     b'-1:lemma:250'
1.195730 Agit     b'-1:word:250'
1.194484 O        b'lemma:argr'
1.194484 O        b'word:ArgR'
1.189614 Gtype    b'+1:lemma:_'
1.189614 Gtype    b'+1:word:_'
1.188908 O        b'+2:ner:_'
1.187521 Air      b'+1:lemma:at'
1.187521 Air      b'+1:word:at'
1.181586 Air      b'-1:lemma:cm20'
1.181586 Air      b'-1:word:Cm20'
1.172850 Substrain b'-1:lemma:.'
1.172850 Substrain b'-1:postag:.'
1.172850 Substrain b'-1:word:.'
1.169130 Air      b'-1:lemma:%'
1.169130 Air      b'-1:word:%'
1.160320 O        b'-1:lemma:\xc2\xb0c'
1.160320 O        b'-1:word:\xc2\xb0C'
1.159404 Gtype    b'+1:lemma:cra'
1.159404 Gtype    b'+1:word:cra'
1.158188 O        b'postag:NNS'
1.154977 O        b'+1:lemma:250'
1.154977 O        b'+1:word:250'
1.142620 O        b'+1:lemma:fnr-8myc'
1.142620 O        b'+1:word:Fnr-8myc'
1.142345 Gtype    b'lemma:ryhb'
1.141076 O        b'+1:postag:VBZ'
1.138542 Gtype    b'lemma:deltaseqa'
1.138542 Gtype    b'-1:lemma:old'
1.138542 Gtype    b'word:deltaSeqA'
1.138542 Gtype    b'-1:word:old'
1.124626 Air      b'+1:lemma:%'
1.124626 Air      b'+1:word:%'
1.112586 Gversion b'lemma:_'
1.112586 Gversion b'word:_'
1.108411 O        b'-1:lemma:.5'
1.108411 O        b'-1:word:.5'
1.098297 Med      b'postag:NNS'
1.098191 O        b'+1:lemma:20'
1.098191 O        b'+1:word:20'
1.093806 Air      b'lemma:%'
1.093806 Air      b'word:%'
1.092428 pH       b'lemma:5.5'
1.092428 pH       b'word:5.5'
1.091015 Technique b'lemma:ChIP-Seq'
1.085365 Technique b'-1:lemma:IP'
1.085365 Technique b'-1:word:IP'
1.073564 O        b'word:GadX'
1.072669 Gtype    b'-1:lemma:factor'
1.072669 Gtype    b'-1:word:factor'
1.068423 Supp     b'+1:lemma:hour'
1.065345 Supp     b'-1:postag:IN'
1.064339 Supp     b'lemma:glutamine'
1.064339 Supp     b'-1:lemma:2g/l'
1.064339 Supp     b'word:glutamine'
1.064339 Supp     b'-1:word:2g/L'
1.063642 O        b'+1:lemma:0.2'
1.063642 O        b'+1:word:0.2'
1.062809 Air      b'-1:lemma:_'
1.062809 Air      b'-1:word:_'
1.057604 Supp     b'-1:lemma:0.3'
1.057604 Supp     b'-1:word:0.3'
1.055963 O        b'-1:lemma:or'
1.055963 O        b'-1:word:or'
1.054913 O        b'-1:lemma:l1'
1.054913 O        b'-1:word:L1'
1.045986 Gtype    b'word:the'
1.043278 Gtype    b'lemma:arca8myc'
1.043278 Gtype    b'word:ArcA8myc'
1.042113 Agit     b'lemma:250'
1.042113 Agit     b'word:250'
1.035220 O        b'isNumber'
1.027683 Gtype    b'-1:lemma:phtpg'
1.027683 Gtype    b'-1:word:PhtpG'
1.026576 Med      b'-1:postag:JJ'
1.023873 OD       b'lemma:o.d.'
1.023873 OD       b'+1:lemma:600nm'
1.023873 OD       b'word:O.D.'
1.023873 OD       b'+1:word:600nm'
1.023815 O        b'+2:ner:KWSUPP'
1.016452 Temp     b'lemma:37'
1.016452 Temp     b'word:37'
1.013083 Phase    b'postag:NN'
1.012969 O        b'-1:lemma:dpd'
1.012969 O        b'-1:word:DPD'
1.011986 Gtype    b'lemma:\xce\xb4soxs'
1.011986 Gtype    b'word:\xce\x94soxS'
1.010587 Supp     b'+1:lemma:min'
1.010587 Supp     b'+1:word:min'
1.005614 Anti     b'postag:JJ'
1.003816 O        b'+1:ner:_'
1.003247 O        b'lemma:2-3'
1.003247 O        b'word:2-3'
1.001180 Supp     b'+1:lemma:be'
0.999745 OD       b'-1:lemma:about'
0.999745 OD       b'-1:word:about'
0.993758 O        b'lemma:chip-fnr'
0.993758 O        b'word:chip-Fnr'
0.993275 OD       b'-1:lemma:~'
0.993275 OD       b'-1:word:~'
0.984912 OD       b'-1:postag:IN'
0.978074 pH       b'postag:CD'
0.976096 O        b'+1:lemma:mid-log'
0.976096 O        b'+1:word:mid-log'
0.974567 Gtype    b'lemma:crp'
0.974567 Gtype    b'word:crp'
0.974094 Gtype    b'lemma:\xce\xb4soxr'
0.974094 Gtype    b'word:\xce\x94soxR'
0.968968 Supp     b'-1:word:OmpR'
0.942094 Anti     b'lemma:anti-rpos'
0.942094 Anti     b'word:anti-RpoS'
0.942087 O        b'+1:lemma:43'
0.942087 O        b'+1:word:43'
0.938272 O        b'-1:lemma:min'
0.938272 O        b'-1:word:min'
0.933162 Anti     b'-1:lemma::'
0.933162 Anti     b'-1:word::'
0.915687 O        b'-1:lemma:mg1655'
0.915687 O        b'-1:word:MG1655'
0.913058 Technique b'+1:lemma:chip-exo'
0.912620 Air      b'lemma:aerobic'
0.908228 Technique b'+1:word:ChIP-exo'
0.906823 Anti     b'lemma:anti-rpob'
0.906823 Anti     b'word:anti-RpoB'
0.906381 Gversion b'+1:postag:CD'
0.904337 Med      b'+1:postag:CD'
0.903729 Gtype    b'-1:lemma:wild'
0.903729 Gtype    b'-1:word:wild'
0.902280 O        b'lemma:rnase'
0.902280 O        b'word:RNase'
0.900088 O        b'-1:lemma:0.3-0.35'
0.900088 O        b'-1:word:0.3-0.35'
0.893639 O        b'+1:lemma:\xe2\x88\x86'
0.893639 O        b'+1:word:\xe2\x88\x86'
0.885626 Temp     b'word:sample'
0.880609 Med      b'-1:lemma:glucose'
0.880609 Med      b'-1:word:glucose'
0.876092 Supp     b'-1:lemma:\xc2\xb5m'
0.876092 Supp     b'-1:word:\xc2\xb5M'
0.875669 O        b'lemma:a'
0.870423 Med      b'+1:lemma:minimal'
0.870423 Med      b'+1:word:minimal'
0.864177 Gtype    b'postag:NN'


Top negative:
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0.004792 O        b'-1:lemma:at'
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0.004597 Supp     b'+1:lemma:10'
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0.004168 OD       b'-1:lemma:to'
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0.003802 Supp     b'-1:postag:CC'
0.003181 Med      b'+2:ner:MED'
0.002992 O        b'+1:lemma:glucose'
0.002992 O        b'+1:word:glucose'
0.002979 O        b'+1:lemma:='
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0.002747 Technique b'isUpper'
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0.002029 O        b'+1:lemma:tritonx-100'
0.002029 O        b'+1:word:TritonX-100'
0.001509 O        b'-1:lemma:25'
0.001509 O        b'-1:word:25'
0.000914 Supp     b'+1:lemma:in'
0.000914 Supp     b'+1:word:in'
0.000664 Supp     b'postag:VBN'
0.000390 O        b'lemma:7.6'
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0.000390 O        b'word:7.6'
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0.000366 Anti     b'lemma:9e10'
0.000366 Anti     b'+1:lemma:myc'
0.000366 Anti     b'word:9E10'
0.000366 Anti     b'+1:word:Myc'
0.000339 O        b'lemma:anaerobically'
0.000339 O        b'word:anaerobically'
0.000183 Med      b'isNumber'
0.000070 Gtype    b'+1:lemma:-'
0.000070 Gtype    b'+1:word:-'
0.000069 Anti     b'+1:lemma:tag'
0.000023 Supp     b'lemma:0.3'
0.000023 Supp     b'word:0.3'
0.000007 Gtype    b'lemma:Fur'
0.000007 Gtype    b'word:Fur'
0.000006 Supp     b'+1:lemma:media'
0.000006 Supp     b'+1:word:media'
0.000004 O        b'lemma:gade'
0.000003 Anti     b'+1:word:tag'
0.000002 Anti     b'+1:ner:TF'
0.000002 O        b'lemma:respiration'
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-0.000002 Anti     b'-1:postag:NN'
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-0.000926 Temp     b'-1:word:\xc2\xb0C'
-0.000992 Supp     b'postag:IN'
-0.001162 O        b'lemma:rna'
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-0.002000 Supp     b'lemma:paraquat'
-0.002000 Supp     b'word:paraquat'
-0.002296 O        b'+1:lemma:~'
-0.002296 O        b'+1:word:~'
-0.002327 Supp     b'+1:lemma:final'
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-0.012032 Air      b'word:anaerobically'
-0.013651 O        b'lemma:m9'
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-0.026139 Supp     b'lemma:,'
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-0.042456 Temp     b'postag:JJ'
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