GSE6781-GSM156748-GPL3051-PMID:17449618.tsv
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"Strain: MG1655 pGIT8 (carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter) Growth: Anaerobic to early exponential growth Media:Minimal salts + 20 mM trimethylamine-N-oxide + .5 mM sodium nitrite" "characteristics_ch1.1"
"Strain: MG1655 pGIT8 (carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter) Growth: Anaerobic to early exponential growth Media:Minimal salts + 20 mM trimethylamine-N-oxide Pool of eight independent cultures" "characteristics_ch2.1"
"Data was analysed using GeneSpring" "data_processing.1"
"An RNeasy midikit was used to prepare total RNA according to the manufacturer’s instructions (QIAGEN Ltd.). Any contaminating DNA was removed using a DNAase column kit (QIAGEN Ltd)." "extract_protocol_ch1.1"
"An RNeasy midikit was used to prepare total RNA according to the manufacturer’s instructions (QIAGEN Ltd.). Any contaminating DNA was removed using a DNAase column kit (QIAGEN Ltd)." "extract_protocol_ch2.1"
"Escherichia coli" "organism_ch1.1"
"Escherichia coli" "organism_ch2.1"
"pGIT8 + NO2" "source_name_ch1.1"
"pGIT8" "source_name_ch2.1"
"pGIT8.4 + NO2" "title.1"
"15 ml of culture was mixed with 30 ml of RNAprotect bacterial reagent (QIAGEN Ltd)." "treatment_protocol_ch1.1"
"15 ml of culture was mixed with 30 ml of RNAprotect bacterial reagent (QIAGEN Ltd)." "treatment_protocol_ch2.1"
"Strain: MG1655 pGIT8 (carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter) Growth: Anaerobic to early exponential growth Media:Minimal salts + 20 mM trimethylamine-N-oxide + .5 mM sodium nitrite" "characteristics_ch1.1"
"Strain: MG1655 pGIT8 (carries 1 base pair deletion in the NsrR-binding site of the ytfE promoter) Growth: Anaerobic to early exponential growth Media:Minimal salts + 20 mM trimethylamine-N-oxide Pool of eight independent cultures" "characteristics_ch2.1"
"Escherichia coli" "organism_ch1.1"
"Escherichia coli" "organism_ch2.1"
"pGIT8 + NO2" "source_name_ch1.1"
"pGIT8" "source_name_ch2.1"
"15 ml of culture was mixed with 30 ml of RNAprotect bacterial reagent (QIAGEN Ltd)." "treatment_protocol_ch1.1"
"15 ml of culture was mixed with 30 ml of RNAprotect bacterial reagent (QIAGEN Ltd)." "treatment_protocol_ch2.1"