"isolate: bovine isolate of e coli o157: H7 FRIK966 lineage II"	"characteristics_ch1.1"
"strain: FRIK966"	"characteristics_ch1.2"
"strain: EDL933"	"characteristics_ch2.1"
"isolate: clinical isolate e coli o157: H7 lineage I"	"characteristics_ch2.2"
"Microarray data analyses were performed using Acuity 4.0 software. Slides were normalized using standard ratio-based methods. Data were analyzed based upon Log ratio (635/532) values. Genes were included in the final dataset that exhibit significance based upon a very conservative FDR less than 2.5% [27] and at least 2.0-fold comparative regulation."	"data_processing.1"
"late log phase grown e coli 966 into RNAprotect solution, RNA extracted with qiagen RNA bacteria kits"	"extract_protocol_ch1.1"
"late log phase grown e coli EDL933 into RNAprotect solution, RNA extracted with qiagen RNA bacteria kits"	"extract_protocol_ch2.1"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"RNA from late log phase E coli FRIK966 rep 4"	"source_name_ch1.1"
"RNA from late log phase E coli EDL933 pooled reference"	"source_name_ch2.1"
"FRIK966 Cy5 rep4 vs EDL933 pool Cy3"	"title.1"
"isolate: bovine isolate of e coli o157: H7 FRIK966 lineage II"	"characteristics_ch1.1"
"strain: FRIK966"	"characteristics_ch1.2"
"strain: EDL933"	"characteristics_ch2.1"
"isolate: clinical isolate e coli o157: H7 lineage I"	"characteristics_ch2.2"
"Escherichia coli"	"organism_ch1.1"
"Escherichia coli"	"organism_ch2.1"
"RNA from late log phase E coli FRIK966 rep 4"	"source_name_ch1.1"
"RNA from late log phase E coli EDL933 pooled reference"	"source_name_ch2.1"